Citrus Sinensis ID: 004214

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------77
Protein Sequence
MFALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVITENVAKEQIESEGKTASKKRKSHKSRESSHKKERRADQTNAAAISLQA
Secondary Structure (PSIPRED)
cEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEEccccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEEcccccccccccccccccEEEEccccccEEEEEEEcccEEEEEEcccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEcccEEEEEEccccccccccccccEEEEEEcccEEEEEEEcccccEEEEEcccccEEEEEccccccccccccccccEEEEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEccccccEEEEEEccccEEEEccccccccccccccccEEEEcccccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccEEEEEEEccccEEEEEcccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccHHHHHHHHccccccEEcccccccEEEccccHHHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHcccHHHHHHHHccEEcccccccccHHHHHHHHHHHcccccHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccccccccccccccccEEccccHHHccccccccHHHHcccccccccHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccccccccccEEEEEccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccccccccccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEccccccEEEEEEccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEccccEEcccccEEEEccccEEEEEEcccccEEEEEcEEEEEEEEcccccEEEEccccccEEEEccccHHHHHHHccccccEEEEEEcccccEEEcccccccEEcccccccHHHHHHccccccHccHHHHHcccccccccccccccccccccccEEEEEEEccEcEccccc
Coil and Loop (DISEMBL)
mfallegadrkvlvwdvdggfcthyfkghkgvvssilfhpdtdksllfsgsddaTVRVWDLLAKKCVATLDKHFSRVTSMAItsdgstlisagrdkvvnlwdlrdysckltvptYEMVEAVcaippgsafdsFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWnadsaclyeqkssdvtisfemddskrgftaatvlpsnqgllcvtaDQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDtcalssgkILIVtgskdnsvrlwdsesrccvgvgtghmgaVGAVAFSKKLQNFLVsgssdhtikvwsfdglsddaeqpMNLKAKAVVAAhgkdinslavapndslvctgsqdrtacvwrlpdLVSVVTfrghkrgiwsvefspvdqVVITAsgdktikiwsisdgsclktfeghtssvLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKtemfatggsDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREwntkpklchVAQFVLFQlfnihppteiieIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDytltgmsviepdtearEVKAESLvdsnvhqdandVVITENVAKEQiesegktaskkrkshksresshkkeRRADQTNAAAISLQA
Flexible Loop (DISEMBL)
mfallegadrkvLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDkhfsrvtsmaitsdgstlisagrdKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTikkkrrslEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVtgskdnsvrlWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFrghkrgiwsvefspvdqVVITasgdktikiWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESlvdsnvhqdandVVITENvakeqiesegktaskkrkshksresshkkerradqtnaaaislqa
Low Complexity Region (SEG)
MFALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTaaereeafrkeeeaVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVITENVAKEQIESEGKTAskkrkshksresshkkerrADQTNAAAISLQA
Disordered region (IsUnstruct)
***LLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS*******NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS***************VLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIE***************************************************************************
Disordered Region (DISOPRED)
MFALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSV*****************************************************************************
Disordered Region (DISEMBL)
MFALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVITENVAKEQ****************************************
Disordered Region (DISPRO)
MFALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVI*E****************************KKERRADQTNAAAI*L**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVITENVAKEQIESEGKTASKKRKSHKSRESSHKKERRADQTNAAAISLQA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	768	2.2.26 [Sep-21-2011]
Q5U2W5	800	Transducin beta-like prot	yes	no	0.848	0.815	0.403	1e-150
Q2KJJ5	800	Transducin beta-like prot	yes	no	0.851	0.817	0.407	1e-149
Q8C4J7	801	Transducin beta-like prot	yes	no	0.848	0.813	0.399	1e-148
Q12788	808	Transducin beta-like prot	yes	no	0.855	0.813	0.403	1e-147
Q9USN3	777	Probable U3 small nucleol	yes	no	0.830	0.821	0.328	1e-105
Q05946	817	U3 small nucleolar RNA-as	yes	no	0.846	0.795	0.323	8e-97
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.615	0.309	0.292	8e-60
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.656	0.400	0.274	2e-46
Q00808	1356	Vegetative incompatibilit	no	no	0.548	0.310	0.273	3e-42
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.600	0.273	0.255	4e-36

>sp|Q5U2W5|TBL3_RAT Transducin beta-like protein 3 OS=Rattus norvegicus GN=Tbl3 PE=2 SV=1

 Score =  531 bits (1367), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 281/696 (40%), Positives = 416/696 (59%), Gaps = 44/696 (6%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
           G D  V VWD+   + TH+F+G  GVV  + FHPD  + LLFS + D ++RVW L  + C
Sbjct: 128 GCDGAVRVWDIVQHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSAVDTSIRVWSLQDRSC 187

Query: 67  VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPP 126
           +A L  H+S VTS++ + DG T++S+GRDK+  +WDLR Y    TVP +E VEA   +P 
Sbjct: 188 LAVLTAHYSAVTSLSFSEDGHTMLSSGRDKICIVWDLRSYETSRTVPVFESVEASVLLPE 247

Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFE 185
             A            +  K   L  HF+T G++GI+R+W A S  C+Y Q         +
Sbjct: 248 EPAL----------ALGVKNSGL--HFLTAGDQGILRVWEAASGQCVYTQP--------Q 287

Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
           M   ++  T  T+  +   LL VTAD  LLLY       +   L L K+  GY+EE+LD+
Sbjct: 288 MSGLRQELTHCTLARAAGLLLTVTADHNLLLY-------EARSLQLQKQFAGYSEEVLDV 340

Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
           +FLG  + ++ VA+N   ++V++L +++C  +L GH++IVL LD   +     L  + +K
Sbjct: 341 RFLGPNDSHIIVASNSPCLKVFELQTLACQ-ILHGHTDIVLALD---VFRKGWLFASCAK 396

Query: 306 DNSVRLW---DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF----- 357
           D S+R+W    +    CV  G+GH  +VG +  S+  ++FLV+GS D T+K+W       
Sbjct: 397 DQSIRIWRMNKAGQVACVAQGSGHTHSVGTICCSRLKESFLVTGSQDCTVKLWPLPEALP 456

Query: 358 --DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV 415
             +  SD    P  L+A++    H KDINSLAV+PND L+ TGSQDRTA +W LP    +
Sbjct: 457 SKNTASDGDLIP--LQAQSTQRCHDKDINSLAVSPNDKLLATGSQDRTAKLWALPQCQLL 514

Query: 416 VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 475
             F GH+RG+W+V+FSP DQV+ TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++R
Sbjct: 515 GVFSGHRRGLWNVQFSPTDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSR 574

Query: 476 GAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 535
           GAQ++S G+DGL+KLWT+++ EC+ T D HEDK+W L   +  +   TGGSD+ + LW D
Sbjct: 575 GAQLLSSGSDGLLKLWTIKSNECVRTLDAHEDKVWGLHCSRLDDHAITGGSDSRIILWKD 634

Query: 536 STAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKRE 595
            T AE+ E   K EE V++ QEL+N + +  Y +A+ +A  L RPH +  +  ++ R  E
Sbjct: 635 VTEAEQAEEQAKREEQVIKQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPE 694

Query: 596 AELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGIS 655
           A  ++E  +  L +++   LL +   WNT  + CH AQ VL  L     P E++   G+ 
Sbjct: 695 ACEKLEATVLRLRRDQKEALLRFCITWNTNSRHCHEAQAVLGVLLRHEAPEELLAYDGVR 754

Query: 656 DVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSV 691
             LE L+PYT+RHF R+ R +++   LD+    M +
Sbjct: 755 GALEALLPYTERHFQRLSRTLQAATFLDFLWHNMKL 790

Rattus norvegicus (taxid: 10116)

>sp|Q2KJJ5|TBL3_BOVIN Transducin beta-like protein 3 OS=Bos taurus GN=TBL3 PE=2 SV=1

 Score =  529 bits (1363), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 283/694 (40%), Positives = 413/694 (59%), Gaps = 40/694 (5%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
           G D  V VWDV   + TH+F+G  GVV  + FHPD  + LLFS + D ++RVW L  + C
Sbjct: 128 GCDGAVRVWDVVRCYGTHHFRGSPGVVHLVAFHPDPARLLLFSSAADTSIRVWSLQERSC 187

Query: 67  VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPP 126
           +A L  H+S VTS+  ++DG T++S+GRDK+  +WDLR      TVP +E VEA   +P 
Sbjct: 188 LAVLTAHYSAVTSLTFSADGHTMLSSGRDKICVIWDLRSLQATRTVPVFESVEAAVLLPE 247

Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFE 185
             A +  + S              +HF+T G++G +R+W A S  C++ Q+         
Sbjct: 248 EPAPELGVKSAG------------LHFLTAGDQGALRVWEAASGRCVHAQQ--------R 287

Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
           +    R  T  T+  +   LL VTAD  LLLY           L L K+  GY+EE+LD+
Sbjct: 288 LRGPGRELTHCTLAHAAGLLLSVTADHNLLLY-------DARSLRLRKQFAGYSEEVLDV 340

Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
           +FLG E+ ++ VA+N   ++V+DL + +C  +L GH++IVL LD      G+ L  + +K
Sbjct: 341 RFLGPEDSHVVVASNSPCLKVFDLQTSACQ-ILHGHTDIVLALDV--FRKGR-LFASCAK 396

Query: 306 DNSVRLW---DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG--L 360
           D S+R+W    S    CV  G+GH  +VG +  S+  + FLV+GS D T+K+W      L
Sbjct: 397 DQSIRVWRMNKSGEVACVAQGSGHTHSVGTICCSRLKETFLVTGSQDCTVKLWPLPEALL 456

Query: 361 SDDAEQ---PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT 417
           S        P+ L+A+A    H KDINS+AVAPND L+ TGSQDRTA +W LP    + T
Sbjct: 457 SKGTGHEGGPVFLQAQATQHCHDKDINSVAVAPNDKLLATGSQDRTAKLWALPRCQLLGT 516

Query: 418 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA 477
           F GH+RG+W V+FSP+DQV+ TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RG 
Sbjct: 517 FSGHRRGLWCVQFSPMDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGT 576

Query: 478 QIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537
           Q++S G+DGL+KLWT++  EC+ T D HEDK+W L   +  +   TG SD+ V LW D T
Sbjct: 577 QLLSSGSDGLLKLWTIKNNECVRTLDAHEDKVWGLHCSRLDDRALTGASDSRVVLWKDVT 636

Query: 538 AAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAE 597
            AE+ E   K EE V++ QEL+N + +  Y +A+ +A  L RPH +  +  ++ R  E+ 
Sbjct: 637 EAEQAEEQAKREEQVVKQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPESC 696

Query: 598 LQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDV 657
            ++E  +  L +++   LL +   WNT  + CH AQ VL  L     P E++   G+   
Sbjct: 697 EKLETTVLQLRRDQKEALLRFCVTWNTNSRHCHEAQAVLGVLLRHEAPDELLTYDGVRAS 756

Query: 658 LEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSV 691
           LEGL+PYT+RHF R+ R++++   LD+    M +
Sbjct: 757 LEGLLPYTERHFQRLSRMLQAATFLDFLWHNMKL 790

Bos taurus (taxid: 9913)

>sp|Q8C4J7|TBL3_MOUSE Transducin beta-like protein 3 OS=Mus musculus GN=Tbl3 PE=2 SV=1

 Score =  527 bits (1358), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 278/696 (39%), Positives = 415/696 (59%), Gaps = 44/696 (6%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
           G D  V VWD+   + TH+F+G  GVV  + FHPD  + LLFS + D ++RVW L  + C
Sbjct: 128 GCDGAVRVWDIVQHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSAVDTSIRVWSLQDRSC 187

Query: 67  VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP- 125
           +A L  H+S VTS++ +  G T++S+GRDK+  +WDL+ Y    TVP +E VEA   +P 
Sbjct: 188 LAVLTAHYSAVTSLSFSEGGHTMLSSGRDKICIVWDLQSYQTTRTVPVFESVEASVLLPE 247

Query: 126 -PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTIS 183
            P  A                 +S  +HF+T G++GI+R+W A S  C+Y Q        
Sbjct: 248 QPAPALGV--------------KSSGLHFLTAGDQGILRVWEAASGQCVYTQP------- 286

Query: 184 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEIL 243
            +M   ++  T  T+  +   LL VTAD  LLLY       +   L L K+  GY+EE+L
Sbjct: 287 -QMPGLRQELTHCTLARAADLLLTVTADHNLLLY-------EAHSLQLQKQFAGYSEEVL 338

Query: 244 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 303
           D++FLG  + ++ VA+N   ++V++L +++C  +L GH++IVL LD   +     L  + 
Sbjct: 339 DVRFLGPSDSHIVVASNSPCLKVFELQTLACQ-ILHGHTDIVLALD---VFRKGWLFASC 394

Query: 304 SKDNSVRLWDSESR---CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD-- 358
           +KD S+R+W         CV  G+GH  +VG +  S+  ++FLV+GS D T+K+W     
Sbjct: 395 AKDQSIRIWKMNKAGQVACVAQGSGHTHSVGTICCSRLKESFLVTGSQDCTVKLWPLPEA 454

Query: 359 --GLSDDAEQ-PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV 415
               S  A+  P+ L+A+     H KDINSLAV+PND L+ TGSQDRTA +W LP    +
Sbjct: 455 LLAKSTAADSGPVLLQAQTTRRCHDKDINSLAVSPNDKLLATGSQDRTAKLWALPQCQLL 514

Query: 416 VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 475
             F GH+RG+W+V+FSP DQV+ TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++R
Sbjct: 515 GVFTGHRRGLWNVQFSPTDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSR 574

Query: 476 GAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 535
           G+Q++S G+DGL+KLWT+++ EC+ T D HEDK+W L   +  +   TGGSD+ + LW D
Sbjct: 575 GSQLLSSGSDGLLKLWTIKSNECVRTLDAHEDKVWGLHCSQLDDHAITGGSDSRIILWKD 634

Query: 536 STAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKRE 595
            T AE+ E   K EE V++ QEL+N + +  Y +A+ +A  L RPH +  +  ++ R  E
Sbjct: 635 VTEAEQAEEQAKREEQVIKQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPE 694

Query: 596 AELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGIS 655
           A  ++E  +  L +++   LL +   WNT  + CH AQ VL  L     P E++   G+ 
Sbjct: 695 ACEKLEATVLRLRRDQKEALLRFCVTWNTNSRHCHEAQAVLGVLLRHEAPEELLAYDGVR 754

Query: 656 DVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSV 691
             LE L+PYT+RHF R+ R +++   LD+    M +
Sbjct: 755 GSLEALLPYTERHFQRLSRTLQAATFLDFLWHNMKL 790

Mus musculus (taxid: 10090)

>sp|Q12788|TBL3_HUMAN Transducin beta-like protein 3 OS=Homo sapiens GN=TBL3 PE=1 SV=2

 Score =  523 bits (1348), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 281/697 (40%), Positives = 414/697 (59%), Gaps = 40/697 (5%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
           G D  V VWD+   + TH+F+G  GVV  + FHPD  + LLFS + DA +RVW L  + C
Sbjct: 128 GCDGAVRVWDIVRHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSATDAAIRVWSLQDRSC 187

Query: 67  VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPP 126
           +A L  H+S VTS+A ++DG T++S+GRDK+  +WDL+      TVP +E VEA   +P 
Sbjct: 188 LAVLTAHYSAVTSLAFSADGHTMLSSGRDKICIIWDLQSCQATRTVPVFESVEAAVLLPE 247

Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFE 185
                      +Q  +K    S  ++F+T G++G +R+W A S  C+Y Q +       E
Sbjct: 248 --------EPVSQLGVK----SPGLYFLTAGDQGTLRVWEAASGQCVYTQ-AQPPGPGQE 294

Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
           +       TA  VL +       TAD  LLLY       +   L L K+  GY+EE+LD+
Sbjct: 295 LTHCTLAHTAGVVLTA-------TADHNLLLY-------EARSLRLQKQFAGYSEEVLDV 340

Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
           +FLG E+ ++ VA+N   ++V++L + +C  +L GH++IVL LD   +     L  + +K
Sbjct: 341 RFLGPEDSHVVVASNSPCLKVFELQTSACQ-ILHGHTDIVLALD---VFRKGWLFASCAK 396

Query: 306 DNSVRLW---DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG--L 360
           D SVR+W    +    CV  G+GH  +VG V  S+  ++FLV+GS D T+K+W      L
Sbjct: 397 DQSVRIWRMNKAGQVMCVAQGSGHTHSVGTVCCSRLKESFLVTGSQDCTVKLWPLPKALL 456

Query: 361 SDDAEQ---PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT 417
           S +      P+ L+A+     H KDINS+A+APND L+ TGSQDRTA +W LP    +  
Sbjct: 457 SKNTAPDNGPILLQAQTTQRCHDKDINSVAIAPNDKLLATGSQDRTAKLWALPQCQLLGV 516

Query: 418 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA 477
           F GH+RG+W V+FSP+DQV+ TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RG 
Sbjct: 517 FSGHRRGLWCVQFSPMDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGT 576

Query: 478 QIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537
           Q++S G+DGLVKLWT++  EC+ T D HEDK+W L   +  +   TG SD+ V LW D T
Sbjct: 577 QLLSSGSDGLVKLWTIKNNECVRTLDAHEDKVWGLHCSRLDDHALTGASDSRVILWKDVT 636

Query: 538 AAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAE 597
            AE+ E   ++EE V+R QEL+N + +  Y +A+ +A  L RPH +  +  ++ R  EA 
Sbjct: 637 EAEQAEEQARQEEQVVRQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEAC 696

Query: 598 LQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDV 657
            ++E  +  L +++   LL +   WNT  + CH AQ VL  L     P E++  +G+   
Sbjct: 697 EKLEATMLRLRRDQKEALLRFCVTWNTNSRHCHEAQAVLGVLLRREAPEELLAYEGVRAA 756

Query: 658 LEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEP 694
           LE L+PYT+RHF R+ R +++   LD+    M +  P
Sbjct: 757 LEALLPYTERHFQRLSRTLQAAAFLDFLWHNMKLPVP 793

Homo sapiens (taxid: 9606)

>sp|Q9USN3|UTP13_SCHPO Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp13 PE=3 SV=3

 Score =  383 bits (984), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 229/698 (32%), Positives = 368/698 (52%), Gaps = 60/698 (8%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
           GA+  V VWD+ G + TH F+GH GV+S++ F    +  +L SG+DD+ VR+WDL + + 
Sbjct: 122 GAEGLVKVWDIAGAYVTHSFRGHGGVISALCFGKHQNTWVLASGADDSRVRLWDLNSSRS 181

Query: 67  VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPP 126
           +A  + H S +  +     GS L+S  RDK V +W+++  S   T+P +  VEA+  +  
Sbjct: 182 MAVFEGHSSVIRGLTFEPTGSFLLSGSRDKTVQVWNIKKRSAVRTIPVFHSVEAIGWV-- 239

Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEM 186
                      N Q  +K          T GE  ++  W+  S        S +    + 
Sbjct: 240 -----------NGQPEEKI-------LYTAGEGNLILAWDWKSG-------SRLDPGVDT 274

Query: 187 DDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLK 246
             S+       V  S   LL V +D  LLL     VP +    I  K+L G  +E++D  
Sbjct: 275 THSETNAIIQVVPFSENTLLSVHSDLSLLLRK--RVPGEG--FITIKKLNGSFDEVIDCA 330

Query: 247 FLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD 306
           ++G++  +LAV +N E + V          VL GH++IVL LD+   S   + + TG+KD
Sbjct: 331 WIGDD--HLAVCSNTEFIDVISTDGTQVFGVLEGHTDIVLTLDS---SEDGVWLATGAKD 385

Query: 307 NSVRLWD----SESRCCVGVGTGHMGAVGAVAFS----KKLQNFLVSGSSDHTIKVWSFD 358
           N+VRLW+         C+ V TGH  +V AVA           FL S S D T+K   F+
Sbjct: 386 NTVRLWNLNIEDNVYKCIHVFTGHTASVTAVALGPLDVNGYPTFLASSSQDRTLK--RFN 443

Query: 359 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 418
             S   +   + +A   + AH +D+N++ V+ +  ++ + SQD+T  +W       V   
Sbjct: 444 LGSQLNKSDFSNRAVWTIKAHDRDVNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGVL 503

Query: 419 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 478
           RGH+RG+W+  F+P  + + + SGD+TI+IW++    C++T EGHT ++L+  ++++G Q
Sbjct: 504 RGHRRGVWACSFNPFSRQLASGSGDRTIRIWNVDTQQCVQTLEGHTGAILKLIYISQGTQ 563

Query: 479 IVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538
           +VS  ADGLVK+W++ +GEC+AT D HED++WALA      +  +GG+DA+V++W D T 
Sbjct: 564 VVSAAADGLVKVWSLSSGECVATLDNHEDRVWALASRFDGSLLVSGGADAVVSVWKDVT- 622

Query: 539 AEREEAFRKEEEAVLRG----QELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKR 594
              EE   K+ E + R     Q L N     D+ +AI +A  L RPH L  LF  V    
Sbjct: 623 ---EEYIAKQAEELERRVEAEQLLSNFEQTEDWQQAIALALSLDRPHGLLRLFERVMTAP 679

Query: 595 E------AELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEI 648
                      ++  L  L   ++  L + +R+WNT  K   VAQ +L  L + + P  +
Sbjct: 680 HQPNSITGNKDVDNVLVQLPDHQLIILFQRIRDWNTNSKTSMVAQRLLRLLLHSYSPEHL 739

Query: 649 IEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTL 686
           +++ GI D+L+ +IPYT RH +R++ L+  ++++DY +
Sbjct: 740 LKLSGIKDILDSMIPYTDRHLARVNDLIEDSYIVDYVI 777

Involved in nucleolar processing of pre-18S ribosomal RNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q05946|UTP13_YEAST U3 small nucleolar RNA-associated protein 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP13 PE=1 SV=1

 Score =  355 bits (911), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 235/726 (32%), Positives = 365/726 (50%), Gaps = 76/726 (10%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS--LLFSGSDDATVRVWDLLAK 64
           G D  ++V D++ G+ TH FKGH G +SS+ F+   +    LL SG  +  V+VWDL+ +
Sbjct: 121 GTDGSIIVVDIENGYITHSFKGHGGTISSLKFYGQLNSKIWLLASGDTNGMVKVWDLVKR 180

Query: 65  KCVATLDKHFSRVTSMAITS------DGSTLISAGRDKVVNLWDLR---DYSCKLTVPTY 115
           KC+ TL +H S V  + I            L+S GRD ++NLWD           T+P  
Sbjct: 181 KCLHTLQEHTSAVRGLDIIEVPDNDEPSLNLLSGGRDDIINLWDFNMKKKCKLLKTLPVN 240

Query: 116 EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 175
           + VE+ C          FL   + + I            T G   I ++ +++S  + ++
Sbjct: 241 QQVES-CG---------FLKDGDGKRI----------IYTAGGDAIFQLIDSESGSVLKR 280

Query: 176 KSSDVTISFEMDDSKRGFTAATVLP--SNQGLLCVTADQQLLLYTTVEVPEKKMELI-LS 232
            +  +   F +           VLP  SN  +  V +DQ L L    E  +   + I ++
Sbjct: 281 TNKPIEELFIIG----------VLPILSNSQMFLVLSDQTLQLINVEEDLKNDEDTIQVT 330

Query: 233 KRLVGYNEEILDLKFLGEEEQYLAVATN---IEQVQVYDLSSMSCSYVL-----AGHSEI 284
             + G +  I D++++G E   LA+ATN   +  + V DLS    S  L      GH ++
Sbjct: 331 SSIAGNHGIIADMRYVGPELNKLALATNSPSLRIIPVPDLSGPEASLPLDVEIYEGHEDL 390

Query: 285 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC----VGVGTGHMGAVGAVAF----S 336
           +  LD    +   + I T SKDN+  +W      C         GH  AV AV      S
Sbjct: 391 LNSLDA---TEDGLWIATASKDNTAIVWRYNENSCKFDIYAKYIGHSAAVTAVGLPNIVS 447

Query: 337 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 396
           K    FL++ S+D TIK W     +   +  +   ++    AH KDIN+L+V+PNDS+  
Sbjct: 448 KGYPEFLLTASNDLTIKKWIIPKPTASMDVQIIKVSEYTRHAHEKDINALSVSPNDSIFA 507

Query: 397 TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 456
           T S D+T  +W L +     T   HKRG+W V F   D+++ T+SGDKT+KIWS+   S 
Sbjct: 508 TASYDKTCKIWNLENGELEATLANHKRGLWDVSFCQYDKLLATSSGDKTVKIWSLDTFSV 567

Query: 457 LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK 516
           +KT EGHT++V R SF+ +  Q++SCGADGL+K+W   +GEC+ T D H +++WAL+   
Sbjct: 568 MKTLEGHTNAVQRCSFINKQKQLISCGADGLIKIWDCSSGECLKTLDGHNNRLWALSTMN 627

Query: 517 KTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFE 576
             +M  +  +D +   W D T  E EE   K +  V + Q L+N +   D+T A  +A  
Sbjct: 628 DGDMIVSADADGVFQFWKDCTEQEIEEEQEKAKLQVEQEQSLQNYMSKGDWTNAFLLAMT 687

Query: 577 LRRPHKLFELFA-----SVCRKREAELQIE--------KALHALGKEEIRQLLEYVREWN 623
           L  P +LF +       S  R+   E +IE        +A+  L  E++  L++  R+WN
Sbjct: 688 LDHPMRLFNVLKRALGESRSRQDTEEGKIEVIFNEELDQAISILNDEQLILLMKRCRDWN 747

Query: 624 TKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLD 683
           T  K   +AQ  +  +   H   ++ EI G+  +++ +IPYTQRHF+R+D LV  +++LD
Sbjct: 748 TNAKTHTIAQRTIRCILMHHNIAKLSEIPGMVKIVDAIIPYTQRHFTRVDNLVEQSYILD 807

Query: 684 YTLTGM 689
           Y L  M
Sbjct: 808 YALVEM 813

Involved in nucleolar processing of pre-18S ribosomal RNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  232 bits (592), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 156/533 (29%), Positives = 254/533 (47%), Gaps = 60/533 (11%)

Query: 8    ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
            +D+ V +WD+  G C + F+GH G V S+ F  + D S+L +GS D TVR+WD+ + +C 
Sbjct: 968  SDQTVRLWDISSGECLYIFQGHTGWVYSVAF--NLDGSMLATGSGDQTVRLWDISSSQCF 1025

Query: 68   ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPP 126
                 H S V S+  +SDG+ L S   D+ V LWD+   +C  T+  +   V +V   P 
Sbjct: 1026 YIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPD 1085

Query: 127  GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFE 185
            G+   S                        G+  IVR+W+  S  CLY  +     + F 
Sbjct: 1086 GAMLAS-----------------------GGDDQIVRLWDISSGNCLYTLQGYTSWVRF- 1121

Query: 186  MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
                          P+   L   ++DQ + L+   ++  KK    L     G+   +  +
Sbjct: 1122 ----------LVFSPNGVTLANGSSDQIVRLW---DISSKKCLYTLQ----GHTNWVNAV 1164

Query: 246  KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
             F   +   LA  +  + V+++D+SS  C Y+L GH+  V   ++   +     + +GS 
Sbjct: 1165 AF-SPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWV---NSVVFNPDGSTLASGSS 1220

Query: 306  DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE 365
            D +VRLW+  S  C+    GH   V +V F+    + L SGSSD T+++W          
Sbjct: 1221 DQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPD-GSMLASGSSDKTVRLWDIS------- 1272

Query: 366  QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGI 425
               + K       H   +NS+A  P+ S++ +GS D+T  +W +     + TF+GH   +
Sbjct: 1273 ---SSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWV 1329

Query: 426  WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD 485
             SV FSP   ++ + S D+T+++WSIS G CL TF GHT+ V    F   GA + S   D
Sbjct: 1330 SSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGD 1389

Query: 486  GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538
              V+LW++ +G+C+ T   H + + ++       + A+G  D  V LW+ S+ 
Sbjct: 1390 QTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSG 1442

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score =  187 bits (475), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 150/546 (27%), Positives = 240/546 (43%), Gaps = 42/546 (7%)

Query: 7    GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
            GAD  V +W V  G C     GH+  V S+ FHPD +   L S S D T+++WD+    C
Sbjct: 703  GADENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGET--LASASGDKTIKLWDIQDGTC 760

Query: 67   VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE-MVEAVCAIP 125
            + TL  H   V  +A + DG+TL S+  D  + LWD+    C  T+ ++   V +V    
Sbjct: 761  LQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSA 820

Query: 126  PGSAFDSFLSSYNQQTIK-KKRRSLEIHFITVGERGIVR--MWNADSACLYEQKSSDVTI 182
             G    +  S    +TIK     + E     +G    V    ++ DS  L    S D TI
Sbjct: 821  DG---QTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVS-GSGDRTI 876

Query: 183  SF----------EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS 232
                         +        +    P  Q L CV+ DQ + L+       +  + +  
Sbjct: 877  KLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNC-----RTGQCL-- 929

Query: 233  KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA 292
            K   G  +  L + F   + Q LA  +N + V+++D  +      L GH++ +  +   A
Sbjct: 930  KAWYGNTDWALPVAF-SPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGI---A 985

Query: 293  LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI 352
             S     + + S D+SVRLW+  +  C  +   H   V AV F  +    + +GS+D T+
Sbjct: 986  FSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQ-GKIIATGSADCTV 1044

Query: 353  KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL 412
            K+W+              +    ++ H   I  +A +P+  L+ + S D++  +W     
Sbjct: 1045 KLWNIS----------TGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTG 1094

Query: 413  VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472
              V   RGH   ++S  FSP  +++ T S D+T+KIW    G CLKT  GHT+ V   +F
Sbjct: 1095 RCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAF 1154

Query: 473  LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL 532
               G  + S   D  V++W V TG+C      H   + ++A     E+ A+G  D  V +
Sbjct: 1155 SPDGKILASASHDQTVRIWDVNTGKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRI 1214

Query: 533  WHDSTA 538
            W+  T 
Sbjct: 1215 WNVKTG 1220

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score =  174 bits (440), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 133/487 (27%), Positives = 216/487 (44%), Gaps = 66/487 (13%)

Query: 22   CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 81
            CT   +GH   V S+ F  D  +  + SGSDD T+++WD  +     TL+ H   V S+A
Sbjct: 833  CTQTLEGHGSSVLSVAFSADGQR--VASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVA 890

Query: 82   ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQ 140
             + D   + S   DK + +WD    +C  T+  +   V++V   P G       S  +  
Sbjct: 891  FSPDRERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQ---RVASGSDDH 947

Query: 141  TIKKKRRSLEIHFITVGERGIVRMWNADSA----CLYEQKSSDVTISFEMDDSKRGFTAA 196
            TIK                    +W+A S      L    SS ++++F            
Sbjct: 948  TIK--------------------IWDAASGTCTQTLEGHGSSVLSVAFS----------- 976

Query: 197  TVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLA 256
               P  Q +   + D+ + ++ T            ++ L G+   +  + F   + Q +A
Sbjct: 977  ---PDGQRVASGSGDKTIKIWDTASG-------TCTQTLEGHGGSVWSVAF-SPDGQRVA 1025

Query: 257  VATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 316
              ++ + ++++D +S +C+  L GH   V    +   S     + +GS D+++++WD+ S
Sbjct: 1026 SGSDDKTIKIWDTASGTCTQTLEGHGGWV---QSVVFSPDGQRVASGSDDHTIKIWDAVS 1082

Query: 317  RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 376
              C     GH  +V +VAFS   Q  + SGS D TIK+W  D  S    Q +        
Sbjct: 1083 GTCTQTLEGHGDSVWSVAFSPDGQR-VASGSIDGTIKIW--DAASGTCTQTLE------- 1132

Query: 377  AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV 436
              HG  ++S+A +P+   V +GS D T  +W         T  GH   + SV FSP  Q 
Sbjct: 1133 -GHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQR 1191

Query: 437  VITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG 496
            V + S DKTIKIW  + G+C +T EGH   V   +F   G ++ S  +D  +K+W   +G
Sbjct: 1192 VASGSSDKTIKIWDTASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDNTIKIWDTASG 1251

Query: 497  ECIATYD 503
             C  T +
Sbjct: 1252 TCTQTLN 1258

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score =  153 bits (387), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 139/543 (25%), Positives = 227/543 (41%), Gaps = 82/543 (15%)

Query: 26   FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD 85
             +GHK  V SI      D   + SGS D T+++W     +   TL+ H   V S++ + D
Sbjct: 1068 LEGHKDGVISISI--SRDGQTIASGSLDKTIKLWSR-DGRLFRTLNGHEDAVYSVSFSPD 1124

Query: 86   GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKK 144
            G T+ S G DK + LW   D +   T+  +E  V  V   P G    S  S ++      
Sbjct: 1125 GQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVYFSPDGKNLASASSDHS------ 1178

Query: 145  KRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQG 204
                             +++W+  S  L             +     G       P  Q 
Sbjct: 1179 -----------------IKLWDTTSGQLL----------MTLTGHSAGVITVRFSPDGQT 1211

Query: 205  LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 264
            +   + D+ + L+        + +  L K L G+ + +  L F   + + LA A+  + +
Sbjct: 1212 IAAGSEDKTVKLW-------HRQDGKLLKTLNGHQDWVNSLSF-SPDGKTLASASADKTI 1263

Query: 265  QVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT 324
            +++ ++       L GH++ V   D    S GK  I + S+DN+++LW+      +   T
Sbjct: 1264 KLWRIADGKLVKTLKGHNDSVW--DVNFSSDGKA-IASASRDNTIKLWNRHG-IELETFT 1319

Query: 325  GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN--------LKAKAVV 376
            GH G V AV F     N + S S D+TI++W    +S       N        L   +++
Sbjct: 1320 GHSGGVYAVNFLPD-SNIIASASLDNTIRLWQRPLISPLEVLAGNSGVYAVSFLHDGSII 1378

Query: 377  AAHGKDIN----------------------SLAVAPNDSLVCTGSQDRTACVWRLPDLVS 414
            A  G D N                       ++  P   L+ + + D+T  +WR+ D  +
Sbjct: 1379 ATAGADGNIQLWHSQDGSLLKTLPGNKAIYGISFTPQGDLIASANADKTVKIWRVRDGKA 1438

Query: 415  VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT 474
            + T  GH   +  V FSP  + + +AS D T+K+W++SDG   KT +GHT  V   SF  
Sbjct: 1439 LKTLIGHDNEVNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFWVSFSP 1498

Query: 475  RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW- 533
             G  I S  AD  ++LW   +G  I +   H D ++++       M A+  +D  V LW 
Sbjct: 1499 DGKIIASASADKTIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWR 1558

Query: 534  -HD 535
             HD
Sbjct: 1559 SHD 1561

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	768
255558071	876	U3 small nucleolar RNA-associated protei	0.986	0.865	0.733	0.0
225454728	887	PREDICTED: transducin beta-like protein	0.990	0.857	0.747	0.0
224124136	913	predicted protein [Populus trichocarpa]	0.903	0.760	0.731	0.0
224144682	853	predicted protein [Populus trichocarpa]	0.967	0.871	0.724	0.0
147775469	1616	hypothetical protein VITISV_036512 [Viti	0.938	0.446	0.702	0.0
356513431	883	PREDICTED: transducin beta-like protein	0.983	0.855	0.701	0.0
297737288	876	unnamed protein product [Vitis vinifera]	0.970	0.850	0.712	0.0
297811813	878	hypothetical protein ARALYDRAFT_909661 [	0.962	0.841	0.687	0.0
356562728	879	PREDICTED: transducin beta-like protein	0.977	0.854	0.692	0.0
449435516	871	PREDICTED: transducin beta-like protein	0.898	0.792	0.723	0.0

>gi|255558071|ref|XP_002520064.1| U3 small nucleolar RNA-associated protein, putative [Ricinus communis] gi|223540828|gb|EEF42388.1| U3 small nucleolar RNA-associated protein, putative [Ricinus communis]

 Score = 1173 bits (3034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/765 (73%), Positives = 661/765 (86%), Gaps = 7/765 (0%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
           GADRKVLVWDVDGGFCTH+FKGHKGVVSS++FHPD +K LLFSGSDDATVRVW+L +KKC
Sbjct: 116 GADRKVLVWDVDGGFCTHFFKGHKGVVSSVMFHPDANKMLLFSGSDDATVRVWNLASKKC 175

Query: 67  VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPP 126
           +ATL++HF+ VTS+ ++ DG TL+SAGRDKVVNLWDL DY+CK+T+PTYE+VE +C I  
Sbjct: 176 IATLERHFTTVTSLEVSEDGWTLLSAGRDKVVNLWDLHDYTCKITIPTYEIVEDLCVIHS 235

Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFE 185
           G+ F S + SY+Q + K +  S  I+FITVGERGIVR+W ++ A CLYEQ SSD+T++ +
Sbjct: 236 GTQFSSLIGSYSQLSGKSRNGSSAIYFITVGERGIVRIWTSERAVCLYEQNSSDITVTSD 295

Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
            D+SKRGFTA+ +LPS+QG+LCVTADQQ LLY  V  PE+K +L L++RL+GYNEEILD+
Sbjct: 296 TDESKRGFTASVILPSDQGVLCVTADQQFLLYLAVGHPEEKFKLELNRRLIGYNEEILDM 355

Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
           +FLGEEE+ LAVATNIEQ++VYDL SMSCSYVL GH+EIVLCLDTC   SG+ LIVTGSK
Sbjct: 356 RFLGEEEKCLAVATNIEQIRVYDLESMSCSYVLPGHTEIVLCLDTCVSRSGRALIVTGSK 415

Query: 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE 365
           D++VRLWDSESR CVGVGTGHMG VGAVAFSKKL+NF VSGSSD TIKVWS DG+S+DA+
Sbjct: 416 DHTVRLWDSESRNCVGVGTGHMGGVGAVAFSKKLKNFFVSGSSDRTIKVWSLDGISEDAD 475

Query: 366 QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGI 425
           Q +NLKAKAVVAAH KDINSLA+APNDSLVC+GSQDRTACVWRLPDLVSVV  +GHKRGI
Sbjct: 476 QFVNLKAKAVVAAHDKDINSLAIAPNDSLVCSGSQDRTACVWRLPDLVSVVVLKGHKRGI 535

Query: 426 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD 485
           WSVEFSPVDQ VITASGDKTIKIW+I+DGSCLKTFEGHTSSVLRASFLTRG Q VSCGAD
Sbjct: 536 WSVEFSPVDQCVITASGDKTIKIWAIADGSCLKTFEGHTSSVLRASFLTRGTQFVSCGAD 595

Query: 486 GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAF 545
           GLVKLWTV+T ECIATYD+HEDK+WALAVGK+TEMFATGG DALVNLW+DSTA+++EEAF
Sbjct: 596 GLVKLWTVKTNECIATYDQHEDKVWALAVGKQTEMFATGGGDALVNLWYDSTASDKEEAF 655

Query: 546 RKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALH 605
           RKEEE VL+GQELENA+L ADYT+AIQ+AFELRRPHKLFELF+ +CRKR A  QIE AL 
Sbjct: 656 RKEEEGVLKGQELENALLYADYTRAIQIAFELRRPHKLFELFSQICRKRGAVNQIENALR 715

Query: 606 ALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYT 665
           ALGKEE R L EYVREWNTKPKLCHVAQ+VLFQ+FNI PPTEI+EIKG+ ++LEGLIPY+
Sbjct: 716 ALGKEEFRLLFEYVREWNTKPKLCHVAQYVLFQVFNILPPTEILEIKGVGELLEGLIPYS 775

Query: 666 QRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVITENVA 725
            RHFSRIDRL+RSTFL+DYTL GMSVIEP+TEA    A++ + +NV  +   ++  E   
Sbjct: 776 LRHFSRIDRLLRSTFLVDYTLIGMSVIEPNTEA----AQTDIPTNVTNEETMLLAEEAEE 831

Query: 726 KEQIES--EGKTASKKRKSHKSRESSHKKERRADQTNAAAISLQA 768
           +EQ     + KT SKKRKS+K+++ SHKK +    T+ AAI LQA
Sbjct: 832 EEQQPEVLKEKTRSKKRKSNKAKDGSHKKVKGTAYTSVAAIPLQA 876

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454728|ref|XP_002272675.1| PREDICTED: transducin beta-like protein 3-like [Vitis vinifera]

 Score = 1159 bits (2997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/768 (74%), Positives = 671/768 (87%), Gaps = 7/768 (0%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
           GADRKVLVWDVDGG+CTHYFKGHKGVV+SI+FHPD ++ LL SGSDDATVRVWDL++KKC
Sbjct: 121 GADRKVLVWDVDGGYCTHYFKGHKGVVTSIIFHPDVNRLLLVSGSDDATVRVWDLMSKKC 180

Query: 67  VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPP 126
           VATL++HFS VTS+A++ DG TL+SAGRDKVVNLWDL DYSCKLTVPTYE++E VC I  
Sbjct: 181 VATLERHFSAVTSLAVSEDGWTLLSAGRDKVVNLWDLHDYSCKLTVPTYEVLEGVCVIHS 240

Query: 127 GSAFDSFLSSYNQQTIKKKR-RSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISF 184
            S F S L SY +Q  +KK+  S  I+FITVGERG VR+WN++ A CL+EQ+SSDVT+S 
Sbjct: 241 KSPFASSLDSYKRQKGRKKKSESPAIYFITVGERGTVRIWNSEGAVCLFEQQSSDVTVSS 300

Query: 185 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILD 244
           + DDSKRGFTAAT+LP +QGLLCVT DQQ L Y+T+   E+ ++L+LSKRLVGYNEEI+D
Sbjct: 301 DSDDSKRGFTAATILPLDQGLLCVTVDQQFLFYSTLTHSEEMLKLMLSKRLVGYNEEIVD 360

Query: 245 LKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS 304
           +KFLGE+EQ+LAVATN+EQVQVYDL+SMSCSYVL+GH+ IVLCLDTC  SSG+  +VTGS
Sbjct: 361 MKFLGEDEQFLAVATNLEQVQVYDLASMSCSYVLSGHTGIVLCLDTCVSSSGRTFVVTGS 420

Query: 305 KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA 364
           KDNSVRLW+SESRCC+GVGTGH GAVGAVAFSKKL+NF VSGSSD T+KVWS DGLSDD 
Sbjct: 421 KDNSVRLWESESRCCIGVGTGHTGAVGAVAFSKKLRNFFVSGSSDRTLKVWSLDGLSDDT 480

Query: 365 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRG 424
           EQP++LKAKAVVAAH KDINSLAVAPNDSLVC+GSQDRTACVWRLPDLVSVV  +GHKRG
Sbjct: 481 EQPISLKAKAVVAAHDKDINSLAVAPNDSLVCSGSQDRTACVWRLPDLVSVVVLKGHKRG 540

Query: 425 IWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 484
           +WSVEFSPVDQ V+TASGDKTIKIW+ISDGSCLKTFEGHTSSVLRASFLTRG Q+VSCGA
Sbjct: 541 VWSVEFSPVDQCVMTASGDKTIKIWAISDGSCLKTFEGHTSSVLRASFLTRGTQVVSCGA 600

Query: 485 DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEA 544
           DGLVKLWT++T ECIATYD+HEDK+WALAVGKKTEM ATGGSDA+VNLWHDSTA+++EEA
Sbjct: 601 DGLVKLWTIKTNECIATYDQHEDKVWALAVGKKTEMLATGGSDAVVNLWHDSTASDKEEA 660

Query: 545 FRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKAL 604
           FRKEEE VL+GQELENA+ D DYTKAIQ+AFELRRPHKLFELF+ + RKREA  Q+EKAL
Sbjct: 661 FRKEEEGVLKGQELENALSDTDYTKAIQIAFELRRPHKLFELFSELSRKREAAEQVEKAL 720

Query: 605 HALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPY 664
           HALGKEE R LLEYVREWNTKPKLCHVAQFVLF++F++ PPTEI E++GI ++LEG+IPY
Sbjct: 721 HALGKEEFRLLLEYVREWNTKPKLCHVAQFVLFRVFSMLPPTEITEMRGIGELLEGIIPY 780

Query: 665 TQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVITENV 724
           +QRHFSR+DRL+R T+LLDYTLTGMSVIEP+T+A+E+K E      V +D+ D    EN 
Sbjct: 781 SQRHFSRMDRLIRGTYLLDYTLTGMSVIEPETDAKEIKDEPETWPEV-KDSGDWPSPENA 839

Query: 725 AKEQIES-EG---KTASKKRKSHKSRESSHKKERRADQTNAAAISLQA 768
            +EQ ++ EG   K +SKKRKS KSR+ + KK +    T  +AISLQA
Sbjct: 840 DEEQEQTLEGLKEKASSKKRKSRKSRDRAQKKVKETAYTKISAISLQA 887

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124136|ref|XP_002319254.1| predicted protein [Populus trichocarpa] gi|222857630|gb|EEE95177.1| predicted protein [Populus trichocarpa]

 Score = 1139 bits (2947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/744 (73%), Positives = 622/744 (83%), Gaps = 50/744 (6%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
           GADRKVLVWDVDGGFCTHYFKGHK VV+SI+FHPDT+K+LLFSGS DATVRVWDLLAKKC
Sbjct: 122 GADRKVLVWDVDGGFCTHYFKGHKDVVTSIMFHPDTNKTLLFSGSADATVRVWDLLAKKC 181

Query: 67  VATLDKHFSRVTSMAITSDGSTLISAGRDK------------------------------ 96
           +ATL++HFS +TSMA++ DG TL++AGRDK                              
Sbjct: 182 IATLERHFSALTSMAVSEDGWTLLTAGRDKTLDGTQPTRGLDQSKVKTIEEGLIRPHQVK 241

Query: 97  ---------------VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT 141
                          VVNLWDL DY CK+T+PTYE++E +C +  G+   SFL S NQQ+
Sbjct: 242 NPGRPGTQSTRDKIHVVNLWDLHDYVCKMTIPTYEVLEGLCVVKSGTELASFLGSCNQQS 301

Query: 142 IKKKRRSLEIHFITVGERGIVRMWNADSAC---LYEQKSSDVTISFEMDDSKRGFTAATV 198
            K++ RS  I+F+TVGERGIVR+W  DS C   LYEQKSSDV +S + DDS RGFTAA +
Sbjct: 302 GKRRDRSSPIYFVTVGERGIVRIW--DSECGVSLYEQKSSDVAVSSDTDDSLRGFTAAVI 359

Query: 199 LPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 258
           LP +QGLLCVT D   L Y+ +  PE+K +LIL+KRLVGYNEEILD++FLGEEE++LAVA
Sbjct: 360 LPLDQGLLCVTVDHHFLFYSLLGHPEEKFKLILNKRLVGYNEEILDMRFLGEEEKFLAVA 419

Query: 259 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 318
           TN+EQVQVYD+ SMSCSYVLAGH+EIVLCLDTC  SSG+ L+ TGSKDNSVRLW+SESR 
Sbjct: 420 TNLEQVQVYDMESMSCSYVLAGHTEIVLCLDTCVSSSGRPLLATGSKDNSVRLWNSESRN 479

Query: 319 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 378
           C+GVGTGHMG VGAVAFSKK +NF VSGSSD TIKVWS DG+SDDA+QP+NLKAKAVVAA
Sbjct: 480 CIGVGTGHMGGVGAVAFSKKWKNFFVSGSSDRTIKVWSLDGISDDADQPINLKAKAVVAA 539

Query: 379 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI 438
           H KDINSLA+APNDSLVC+GSQDRTACVWRLPDLVSVV  +GHKRGIWSVEFSPVDQ VI
Sbjct: 540 HDKDINSLAIAPNDSLVCSGSQDRTACVWRLPDLVSVVVLKGHKRGIWSVEFSPVDQCVI 599

Query: 439 TASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC 498
           TASGDKTIK+W+I+DGSCLKTFEGHTSSVLRASFLTRG+Q VSCGADGLVKLWTV+T EC
Sbjct: 600 TASGDKTIKMWAIADGSCLKTFEGHTSSVLRASFLTRGSQFVSCGADGLVKLWTVKTNEC 659

Query: 499 IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQEL 558
            ATYD+HEDK+WALA+GKKTEMFATGG DA+VNLW+DSTA+++EEAFRKEEE VLRGQEL
Sbjct: 660 TATYDQHEDKVWALAIGKKTEMFATGGGDAVVNLWYDSTASDKEEAFRKEEEGVLRGQEL 719

Query: 559 ENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEY 618
           ENAVLDADY KAIQ+AFEL RP+KLFELFA +CRK+E   QIEKALH LGKEEI QL +Y
Sbjct: 720 ENAVLDADYIKAIQIAFELHRPNKLFELFAELCRKKEGSSQIEKALHVLGKEEIHQLFQY 779

Query: 619 VREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRS 678
           VREWNTKPKLCHVAQ+VLF +FNI PPTEI+EIKGI ++LEGLIPY+QRH SRIDRL+RS
Sbjct: 780 VREWNTKPKLCHVAQYVLFGVFNILPPTEILEIKGIGELLEGLIPYSQRHLSRIDRLLRS 839

Query: 679 TFLLDYTLTGMSVIEPDTEAREVK 702
           TFLLDYTL GMSVIEPDT A E+K
Sbjct: 840 TFLLDYTLHGMSVIEPDTNATEMK 863

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144682|ref|XP_002325374.1| predicted protein [Populus trichocarpa] gi|222862249|gb|EEE99755.1| predicted protein [Populus trichocarpa]

 Score = 1120 bits (2898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/765 (72%), Positives = 644/765 (84%), Gaps = 22/765 (2%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
           GADRKVLVWDVDGGFCTHYFKGHK VV++++FHPDT+K+LLFSGS DATVRVWDLLAKKC
Sbjct: 106 GADRKVLVWDVDGGFCTHYFKGHKDVVTTLMFHPDTNKTLLFSGSADATVRVWDLLAKKC 165

Query: 67  VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPP 126
            ATL++HFS +TSMA++ DG TL++AGRDKVVNLW L DY  K+T+PTYE++E +C +  
Sbjct: 166 FATLERHFSSLTSMAVSEDGWTLLTAGRDKVVNLWHLHDYVFKMTIPTYEVLEGLCVVKS 225

Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEM 186
           G+   SFL S N Q+ K++ RS  I+FITVGERG+V      + CLYEQKSSDVT+S + 
Sbjct: 226 GTELASFLGSCNLQSGKRRDRSSSIYFITVGERGLV------AVCLYEQKSSDVTVSSDT 279

Query: 187 DDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLK 246
           DDS RGFTAA +LP +QGLLCVT D Q L Y+ V   E+K +L+LSKRLVGYNEEILD++
Sbjct: 280 DDSPRGFTAAVILPLDQGLLCVTVDHQFLFYSLVVHLEEKFKLMLSKRLVGYNEEILDMR 339

Query: 247 FLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD 306
           FLGEEE++LAVATN+EQVQVYDL SMSCSYVLAGH+EIVLCLDTC  SSG+ L+VTGSKD
Sbjct: 340 FLGEEEKFLAVATNLEQVQVYDLESMSCSYVLAGHTEIVLCLDTCVSSSGRPLLVTGSKD 399

Query: 307 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ 366
           NSVRLW+SES  C+GVG GHMG VGAVAFSKK +NF VSGSSD TIKVWS DG+SDDA+Q
Sbjct: 400 NSVRLWNSESINCIGVGMGHMGGVGAVAFSKKWKNFFVSGSSDRTIKVWSIDGISDDADQ 459

Query: 367 PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIW 426
           P+NLKAKAVVAAH KDINSLA+APND+LVC+GSQDRTACVWRLPDLVSVV  +GHKRGIW
Sbjct: 460 PINLKAKAVVAAHDKDINSLAIAPNDTLVCSGSQDRTACVWRLPDLVSVVVLKGHKRGIW 519

Query: 427 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 486
           SVEFSPVDQ VITASGDKTIK+W+I++GSCLKTFEGHTSSVLRASFLTRG Q VSCGADG
Sbjct: 520 SVEFSPVDQCVITASGDKTIKMWAIANGSCLKTFEGHTSSVLRASFLTRGTQFVSCGADG 579

Query: 487 LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFR 546
           LVKLWTV+T ECIATYD+HEDK+WALA+G+KTEMFATGG DA+VNLW+DSTA+++ EAFR
Sbjct: 580 LVKLWTVKTNECIATYDQHEDKVWALAIGRKTEMFATGGGDAVVNLWYDSTASDKAEAFR 639

Query: 547 KEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHA 606
           KEEE VLRGQELENAVLDADY KAIQ+AFEL RPHKLFELFA +CRK     QIE AL A
Sbjct: 640 KEEEGVLRGQELENAVLDADYNKAIQIAFELHRPHKLFELFAELCRKDGGN-QIETALRA 698

Query: 607 LGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQ 666
           LGKEEI  L EY+REWNTKPK CHVAQ+VLF +FNI PPTEI+EI+GI ++LEGLIPY+Q
Sbjct: 699 LGKEEIHLLFEYIREWNTKPKFCHVAQYVLFGVFNIFPPTEILEIRGIGELLEGLIPYSQ 758

Query: 667 RHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVITENVAK 726
           RHFSRIDRLVRSTFLLDYTL GMSVIEPDT A E+            DA++ ++ E   +
Sbjct: 759 RHFSRIDRLVRSTFLLDYTLHGMSVIEPDTNATEM-----------NDADNKLLVEKGDQ 807

Query: 727 EQ-IESE---GKTASKKRKSHKSRESSHKKERRADQTNAAAISLQ 767
           EQ + SE    K  SKKRK +KS+++S KK + A  T+ A I L+
Sbjct: 808 EQELTSEMLKEKALSKKRKPNKSKDTSRKKVKGAAYTSLAPIPLK 852

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775469|emb|CAN76090.1| hypothetical protein VITISV_036512 [Vitis vinifera]

 Score = 1117 bits (2889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/786 (70%), Positives = 641/786 (81%), Gaps = 65/786 (8%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
           GADRKVLVWDVDGG+CTHYFKGHKGVV+SI+FHPD ++ LL SGSDDATVRVWDL++KKC
Sbjct: 121 GADRKVLVWDVDGGYCTHYFKGHKGVVTSIIFHPDVNRLLLVSGSDDATVRVWDLMSKKC 180

Query: 67  VATLDKHFSRVTSMAITSDGSTLISAGRDK-------------VVNLWDLRDYSCKLTVP 113
           VATL++HFS VTS+A++ DG TL+SAGRDK             VVNLWDL DYSCKLTVP
Sbjct: 181 VATLERHFSAVTSLAVSEDGWTLLSAGRDKAGLHLFXIFTADMVVNLWDLHDYSCKLTVP 240

Query: 114 TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR-RSLEIHFITVGERGIVRMWNADSA-C 171
           TYE++E VC I   S F S L SY +Q  +KK+  S  I+FITVGERG VR+WN++ A C
Sbjct: 241 TYEVLEGVCVIHSKSPFASSLDSYKRQKGRKKKSESPAIYFITVGERGTVRIWNSEGAVC 300

Query: 172 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELIL 231
           L+EQ+SSDVT+S + DDSKRGFTAAT+LP +QGLLCVT DQQ L Y+T+   E+ ++L+L
Sbjct: 301 LFEQQSSDVTVSSDSDDSKRGFTAATILPLDQGLLCVTVDQQFLFYSTLTXSEEMLKLML 360

Query: 232 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTC 291
           SKRLVGYNEEI+D+KFLGE+EQ+LAVATN+EQVQVYDL+SMSCSYVL+GH  IVLCLDTC
Sbjct: 361 SKRLVGYNEEIVDMKFLGEDEQFLAVATNLEQVQVYDLASMSCSYVLSGHXGIVLCLDTC 420

Query: 292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT 351
             SSG+  +VTGSKDNSVRLW+SESRCC+GVGTGH GAVGAVAFSKK +NF VSGSSD T
Sbjct: 421 VSSSGRTFVVTGSKDNSVRLWESESRCCIGVGTGHTGAVGAVAFSKKXRNFFVSGSSDRT 480

Query: 352 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD 411
           +KVWS DGLSDD EQP++LKAKAVVAAH KDINSLAVAPNDSLVC+GSQDRTACVWRLPD
Sbjct: 481 LKVWSLDGLSDDTEQPISLKAKAVVAAHDKDINSLAVAPNDSLVCSGSQDRTACVWRLPD 540

Query: 412 LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRAS 471
           LVSVV  +GHKRG+WSVEFSPVDQ V+TASGDKTIKIW+ISDGSCLKTFEGHTSSVLRAS
Sbjct: 541 LVSVVVLKGHKRGVWSVEFSPVDQCVMTASGDKTIKIWAISDGSCLKTFEGHTSSVLRAS 600

Query: 472 FLTRGAQIVSC--------------------------GADGLVKLWTVRTGECIATYDKH 505
           FLTRG Q+VSC                          GADGLVKLWT++T ECIATYD+H
Sbjct: 601 FLTRGTQVVSCGNGAYCYLIGLCIIPITYVFNNPSFSGADGLVKLWTIKTNECIATYDQH 660

Query: 506 EDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKE----------------- 548
           EDK+WALAVGKKTEM ATGGSDA+VNLWHDSTA+++EEAFRKE                 
Sbjct: 661 EDKVWALAVGKKTEMLATGGSDAVVNLWHDSTASDKEEAFRKECNEKFEIGIMWHQVHKT 720

Query: 549 ------EEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEK 602
                 EE VL+GQELENA+ D DYTKAIQ+AFELRRPHKLFELF+ + RKREA  Q+EK
Sbjct: 721 XNENSKEEGVLKGQELENALSDTDYTKAIQIAFELRRPHKLFELFSELSRKREAAEQVEK 780

Query: 603 ALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLI 662
           ALHALGKEE R LLEYVREWNTKPKLCHVAQFVLF++F++ PPTEI E++GI ++LEG+I
Sbjct: 781 ALHALGKEEFRLLLEYVREWNTKPKLCHVAQFVLFRVFSMLPPTEITEMRGIGELLEGII 840

Query: 663 PYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVITE 722
           PY+QRHFSR+DRL+R T+LLDYTLTGMSVIEP+T+A+E+K E      V +D+ D    E
Sbjct: 841 PYSQRHFSRMDRLIRGTYLLDYTLTGMSVIEPETDAKEIKDEPETWPEV-KDSGDWPSPE 899

Query: 723 NVAKEQ 728
           N  +EQ
Sbjct: 900 NADEEQ 905

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513431|ref|XP_003525417.1| PREDICTED: transducin beta-like protein 3-like [Glycine max]

 Score = 1095 bits (2831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/770 (70%), Positives = 640/770 (83%), Gaps = 15/770 (1%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD----ATVRVWDL- 61
           GADRKVLVWDVDGG+CTHYFKGH GVVS ++FHPD +K LLFSGSDD    ATVRVWD+ 
Sbjct: 121 GADRKVLVWDVDGGYCTHYFKGHGGVVSCVMFHPDPEKQLLFSGSDDGGDHATVRVWDIS 180

Query: 62  --LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVE 119
               K C+ATLD H S VTS+A++ DG TL+SAGRDKVV LWDL DYS K TV T E VE
Sbjct: 181 KTKKKNCIATLDNHSSAVTSLALSEDGWTLLSAGRDKVVTLWDLHDYSSKKTVITNEAVE 240

Query: 120 AVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSS 178
           AVC +  GS F S L SY QQ +KK+  S   +FITVGERGIVR+WN+  A C++EQK+S
Sbjct: 241 AVCVLGSGSPFASSLDSY-QQNLKKRDGSQIFYFITVGERGIVRIWNSKGAGCIFEQKTS 299

Query: 179 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 238
           DVT + + D S+RGFT+A +L S+QGLLCVTADQQ L Y+ +E  E+ ++L L+KRLVGY
Sbjct: 300 DVTANIDEDGSRRGFTSAVMLASDQGLLCVTADQQFLFYS-LECTEELLQLNLTKRLVGY 358

Query: 239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 298
           NEEI+D+KF+G++E++LA+ATN+EQV+VYDL+SMSCSYVL+GH+EI+LCLDTC  SSGK 
Sbjct: 359 NEEIVDMKFIGDDEKFLALATNLEQVRVYDLASMSCSYVLSGHTEIILCLDTCVSSSGKT 418

Query: 299 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 358
           LIVTGSKDNSVRLW+SES  C+GVG GHMGAVGA+AFSK+ Q+F VSGSSDHT+KVWS D
Sbjct: 419 LIVTGSKDNSVRLWESESANCIGVGIGHMGAVGAIAFSKRKQDFFVSGSSDHTLKVWSMD 478

Query: 359 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 418
           GLSD+   P+NLKAKAVVAAH KDINS+AVAPNDSLVC+GSQDRTACVWRLPDLVSVV F
Sbjct: 479 GLSDNMTMPINLKAKAVVAAHDKDINSVAVAPNDSLVCSGSQDRTACVWRLPDLVSVVVF 538

Query: 419 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 478
           +GHKRGIWSVEFSPVDQ V+TASGDKTI+IW+ISDGSCLKTFEGHTSSVLRA F+TRG Q
Sbjct: 539 KGHKRGIWSVEFSPVDQCVVTASGDKTIRIWAISDGSCLKTFEGHTSSVLRALFVTRGTQ 598

Query: 479 IVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538
           IVSCGADGLVKLWTV+T EC+ATYD HEDK+WALAVG+KTE  ATGG DA+VNLW DSTA
Sbjct: 599 IVSCGADGLVKLWTVKTNECVATYDHHEDKVWALAVGRKTEKLATGGGDAVVNLWFDSTA 658

Query: 539 AEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAEL 598
           A++EEAFRKEEE V++GQELENAV DADYTKAIQ+AFELRRPH+LFELFA +CRKREAE 
Sbjct: 659 ADKEEAFRKEEEGVVKGQELENAVSDADYTKAIQIAFELRRPHRLFELFAELCRKREAED 718

Query: 599 QIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVL 658
            +++AL  LG EE+R L  Y+REWNTKPKLC+V+QFVLF++F+I PPT+I++IKGI + L
Sbjct: 719 HMDRALKGLGSEELRILFNYIREWNTKPKLCYVSQFVLFRVFSIFPPTDIVQIKGIGEFL 778

Query: 659 EGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDV 718
           EGLIPY+QRHF RIDRLVRSTFLLDY L+GMSVIEP  +  E KAE L+ S +     D+
Sbjct: 779 EGLIPYSQRHFGRIDRLVRSTFLLDYILSGMSVIEPQVQPTESKAELLLQSEI-----DI 833

Query: 719 VITENVAKEQIESEGKTASKKRKSHKSRESSHKKERRADQTNAAAISLQA 768
              EN  +++  +   TASKKRKS+KS+  SHKK +        +I LQA
Sbjct: 834 PDKENGIEKKDHTHEITASKKRKSNKSKHGSHKKVKNVAYNKVESIQLQA 883

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737288|emb|CBI26489.3| unnamed protein product [Vitis vinifera]

 Score = 1085 bits (2806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/773 (71%), Positives = 651/773 (84%), Gaps = 28/773 (3%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
           GADRKVLVWDVDGG+CTHYFKGHKGVV+SI+FHPD ++ LL SGSDDATVRVWDL++KKC
Sbjct: 121 GADRKVLVWDVDGGYCTHYFKGHKGVVTSIIFHPDVNRLLLVSGSDDATVRVWDLMSKKC 180

Query: 67  VATLDKHFSRVTSMAITSDGSTLISAGRDKV-VNLW-----DLRDYSCKLTVPTYEMVEA 120
           VATL++HFS VTS+A++ DG TL+SAGRDK  ++L+     D+    C  +     M E 
Sbjct: 181 VATLERHFSAVTSLAVSEDGWTLLSAGRDKAGLHLFFIFTADMSSSPCFDSKDQNNMAE- 239

Query: 121 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSD 179
              +P    F S L ++          S  I+FITVGERG VR+WN++ A CL+EQ+SSD
Sbjct: 240 ---LP---FFPSSLLAFE---------SPAIYFITVGERGTVRIWNSEGAVCLFEQQSSD 284

Query: 180 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYN 239
           VT+S + DDSKRGFTAAT+LP +QGLLCVT DQQ L Y+T+   E+ ++L+LSKRLVGYN
Sbjct: 285 VTVSSDSDDSKRGFTAATILPLDQGLLCVTVDQQFLFYSTLTHSEEMLKLMLSKRLVGYN 344

Query: 240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKIL 299
           EEI+D+KFLGE+EQ+LAVATN+EQVQVYDL+SMSCSYVL+GH+ IVLCLDTC  SSG+  
Sbjct: 345 EEIVDMKFLGEDEQFLAVATNLEQVQVYDLASMSCSYVLSGHTGIVLCLDTCVSSSGRTF 404

Query: 300 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 359
           +VTGSKDNSVRLW+SESRCC+GVGTGH GAVGAVAFSKKL+NF VSGSSD T+KVWS DG
Sbjct: 405 VVTGSKDNSVRLWESESRCCIGVGTGHTGAVGAVAFSKKLRNFFVSGSSDRTLKVWSLDG 464

Query: 360 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR 419
           LSDD EQP++LKAKAVVAAH KDINSLAVAPNDSLVC+GSQDRTACVWRLPDLVSVV  +
Sbjct: 465 LSDDTEQPISLKAKAVVAAHDKDINSLAVAPNDSLVCSGSQDRTACVWRLPDLVSVVVLK 524

Query: 420 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQI 479
           GHKRG+WSVEFSPVDQ V+TASGDKTIKIW+ISDGSCLKTFEGHTSSVLRASFLTRG Q+
Sbjct: 525 GHKRGVWSVEFSPVDQCVMTASGDKTIKIWAISDGSCLKTFEGHTSSVLRASFLTRGTQV 584

Query: 480 VSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 539
           VSCGADGLVKLWT++T ECIATYD+HEDK+WALAVGKKTEM ATGGSDA+VNLWHDSTA+
Sbjct: 585 VSCGADGLVKLWTIKTNECIATYDQHEDKVWALAVGKKTEMLATGGSDAVVNLWHDSTAS 644

Query: 540 EREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQ 599
           ++EEAFRKEEE VL+GQELENA+ D DYTKAIQ+AFELRRPHKLFELF+ + RKREA  Q
Sbjct: 645 DKEEAFRKEEEGVLKGQELENALSDTDYTKAIQIAFELRRPHKLFELFSELSRKREAAEQ 704

Query: 600 IEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLE 659
           +EKALHALGKEE R LLEYVREWNTKPKLCHVAQFVLF++F++ PPTEI E++GI ++LE
Sbjct: 705 VEKALHALGKEEFRLLLEYVREWNTKPKLCHVAQFVLFRVFSMLPPTEITEMRGIGELLE 764

Query: 660 GLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVV 719
           G+IPY+QRHFSR+DRL+R T+LLDYTLTGMSVIEP+T+A+E+K E      V +D+ D  
Sbjct: 765 GIIPYSQRHFSRMDRLIRGTYLLDYTLTGMSVIEPETDAKEIKDEPETWPEV-KDSGDWP 823

Query: 720 ITENVAKEQIES-EG---KTASKKRKSHKSRESSHKKERRADQTNAAAISLQA 768
             EN  +EQ ++ EG   K +SKKRKS KSR+ + KK +    T  +AISLQA
Sbjct: 824 SPENADEEQEQTLEGLKEKASSKKRKSRKSRDRAQKKVKETAYTKISAISLQA 876

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811813|ref|XP_002873790.1| hypothetical protein ARALYDRAFT_909661 [Arabidopsis lyrata subsp. lyrata] gi|297319627|gb|EFH50049.1| hypothetical protein ARALYDRAFT_909661 [Arabidopsis lyrata subsp. lyrata]

 Score = 1065 bits (2754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/752 (68%), Positives = 627/752 (83%), Gaps = 13/752 (1%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-- 64
           GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDT+K++LFSGSDDATVRVWDLLAK  
Sbjct: 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTNKNILFSGSDDATVRVWDLLAKNT 180

Query: 65  --KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 122
             KC+A L+KHFS VTS+A++ DG  L SAGRDKVVNLWDL DYSCK T+ TYE++EAV 
Sbjct: 181 EKKCLAILEKHFSAVTSIALSEDGWNLFSAGRDKVVNLWDLHDYSCKTTIATYEVLEAVT 240

Query: 123 AIPPGSAFDSFLSSYNQQTIKKKRRSLE-IHFITVGERGIVRMWNAD-SACLYEQKSSDV 180
           A+  G+ F SF++S +Q+  KKK    +  +FITVGERG+VR+W ++ S CLYEQKSSD+
Sbjct: 241 AVSSGTPFASFVASLDQKKSKKKESDSQGTYFITVGERGVVRIWKSEGSICLYEQKSSDI 300

Query: 181 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 240
           T+S + ++SKRGFTAA +L S++GLLCVTADQQ   Y+ VE  E+  EL+LSKRLVGYNE
Sbjct: 301 TVSSDDEESKRGFTAAAMLSSDRGLLCVTADQQFFFYSVVENVEES-ELVLSKRLVGYNE 359

Query: 241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILI 300
           EI D+KFLG+EEQ+LAVATN+E+V+VYD+++MSCSYVLAGH E++L LDTC  SSG +LI
Sbjct: 360 EIADMKFLGDEEQFLAVATNLEEVRVYDVATMSCSYVLAGHKEVILSLDTCVSSSGNVLI 419

Query: 301 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 360
           VTGSKD +VRLW++ S+ C+GVGTGH G + AVAF+KK  +F VSGS D T+KVWS DG+
Sbjct: 420 VTGSKDKTVRLWNATSKSCIGVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSLDGI 479

Query: 361 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 420
           S+ +E P+NLK ++VVAAH KDINS+AVA NDSLVCTGS+DRTA +WRLPDLV VVT +G
Sbjct: 480 SEGSEDPVNLKTRSVVAAHDKDINSVAVARNDSLVCTGSEDRTASIWRLPDLVHVVTLKG 539

Query: 421 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 480
           HKR I+SVEFS VDQ V+TASGDKT+KIW+ISDGSCLKTFEGHTSSVLRASF+T G Q V
Sbjct: 540 HKRRIFSVEFSTVDQCVMTASGDKTVKIWAISDGSCLKTFEGHTSSVLRASFITEGTQFV 599

Query: 481 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 540
           SCGADGL+KLW V T ECIATYD+HEDK+WALAVGKKTEM ATGG DA++NLWHDSTA++
Sbjct: 600 SCGADGLLKLWNVNTSECIATYDQHEDKVWALAVGKKTEMIATGGGDAVINLWHDSTASD 659

Query: 541 REEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQI 600
           +E+ FRKEEEA+LRGQELENAVLDA+YTKAI++AFELRRPHK+FELFA +CRKRE++ QI
Sbjct: 660 KEDEFRKEEEAILRGQELENAVLDAEYTKAIRLAFELRRPHKVFELFAGLCRKRESDEQI 719

Query: 601 EKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEG 660
            KAL  L KEE R L EYVREWNTKPKLCH+AQFVL+Q FNI PPTEI+++KGI ++LEG
Sbjct: 720 VKALQGLEKEEFRLLFEYVREWNTKPKLCHIAQFVLYQTFNILPPTEIVQVKGIGELLEG 779

Query: 661 LIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVI 720
           LIPY+QRHF+RIDR VRS+FLLDYTL  MSVI+P+TE    K +   +  V      +  
Sbjct: 780 LIPYSQRHFNRIDRFVRSSFLLDYTLGEMSVIDPETETEYPKDKKKKEKEV------IAA 833

Query: 721 TENVAKEQIESEGKTASKKRKSHKSRESSHKK 752
              + ++  E   +T S+KRKS KS++ S+KK
Sbjct: 834 VSAMEQDTEELTKETPSRKRKSQKSKDKSNKK 865

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562728|ref|XP_003549621.1| PREDICTED: transducin beta-like protein 3-like [Glycine max]

 Score = 1060 bits (2741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/770 (69%), Positives = 624/770 (81%), Gaps = 19/770 (2%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD----ATVRVWDL- 61
           GADRKVLVWDVDGG+CTHYFKGH GVVS ++FH D +K LLFSGSDD    ATVRVWD+ 
Sbjct: 121 GADRKVLVWDVDGGYCTHYFKGHGGVVSCVMFHSDPEKQLLFSGSDDGGDHATVRVWDIS 180

Query: 62  --LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVE 119
               K C+ATLD H S VTS+A++ DG TL+SAGRDKVV LWDL  YS K TV T E VE
Sbjct: 181 KTKKKNCIATLDNHSSAVTSLALSEDGWTLLSAGRDKVVTLWDLHGYSGKKTVITNEAVE 240

Query: 120 AVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSS 178
           AVC I  GS F S L  Y QQ  K    S   +FITVGERGIVR+WN+  A C++EQK+S
Sbjct: 241 AVCVIGAGSPFASSLDLY-QQNAKIHDGSEIFYFITVGERGIVRIWNSKGAGCIFEQKTS 299

Query: 179 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 238
           DVT   + D S+RGFT+A +L S+QGLLCVTADQQ L Y+ ++  E+ ++L L+KRLVGY
Sbjct: 300 DVTAGMDEDGSRRGFTSAVMLASDQGLLCVTADQQFLFYS-LDFTEQLLQLNLTKRLVGY 358

Query: 239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 298
           NEEI+D+KF+G++E++LA+ATN+EQ++VYDLSSMSCSYVL+GH+EIVLCLD+C  SSGK 
Sbjct: 359 NEEIVDMKFIGDDEKFLALATNLEQIRVYDLSSMSCSYVLSGHTEIVLCLDSCVSSSGKP 418

Query: 299 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 358
           LIVTGSKDNSVRLW+ ES  C+GVG GHMGAVGA+AFSK+ ++F VSGSSDHT+KVWS D
Sbjct: 419 LIVTGSKDNSVRLWEPESANCIGVGIGHMGAVGAIAFSKRKRDFFVSGSSDHTLKVWSMD 478

Query: 359 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 418
           GL D+   P+NLKAKAVVAAH KDINS+AVAPNDSLVC+GSQDRTACVWRLPDLVSVV F
Sbjct: 479 GLLDNMTVPINLKAKAVVAAHDKDINSVAVAPNDSLVCSGSQDRTACVWRLPDLVSVVVF 538

Query: 419 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 478
           +GHKRGIWSVEFSPVDQ V+TASGDKTI+IW+ISDGSCLKTFEGHTSSVLRA F+TRG Q
Sbjct: 539 KGHKRGIWSVEFSPVDQCVVTASGDKTIRIWAISDGSCLKTFEGHTSSVLRALFVTRGTQ 598

Query: 479 IVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538
           IVSCGADGLVKLWTV+T EC+ATYD HEDK+WALAVG+KTE  ATGG DA+VNLW DSTA
Sbjct: 599 IVSCGADGLVKLWTVKTNECVATYDHHEDKVWALAVGRKTEKLATGGGDAVVNLWFDSTA 658

Query: 539 AEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAEL 598
           A++EEAFRKEEE V++GQELENAV DADYTKAIQ+AFELRRPH+LFELFA +CRKREAE 
Sbjct: 659 ADKEEAFRKEEEGVVKGQELENAVSDADYTKAIQIAFELRRPHRLFELFAELCRKREAED 718

Query: 599 QIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVL 658
            +++AL  L  EE+R L  YVREWNTKPKLC+V+QFVLF++F I PPT+I++IKGI + L
Sbjct: 719 HMDRALKGLDSEELRILFNYVREWNTKPKLCYVSQFVLFRVFCIFPPTDIVQIKGIGEYL 778

Query: 659 EGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDV 718
           EGLIPY+QRHF RIDRLVRSTFLLDY L+GMSVIEP  +  E K E L+ S +     D 
Sbjct: 779 EGLIPYSQRHFGRIDRLVRSTFLLDYILSGMSVIEPQAQLTESKTELLLQSEIGIPDPD- 837

Query: 719 VITENVAKEQIESEGKTASKKRKSHKSRESSHKKERRADQTNAAAISLQA 768
              EN   E       TASKKRKS+KS+  SHKK +        +I LQA
Sbjct: 838 --KENDTNE------ITASKKRKSNKSKHGSHKKVKNVAYNKVESIQLQA 879

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435516|ref|XP_004135541.1| PREDICTED: transducin beta-like protein 3-like [Cucumis sativus] gi|449488540|ref|XP_004158077.1| PREDICTED: transducin beta-like protein 3-like [Cucumis sativus]

 Score = 1060 bits (2740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/695 (72%), Positives = 602/695 (86%), Gaps = 5/695 (0%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
           GADRKVLVWDVDGGFCTHYF GHKGVVSSILFHPD +K LLFSGS+D  VR WDL++KKC
Sbjct: 121 GADRKVLVWDVDGGFCTHYFTGHKGVVSSILFHPDPNKQLLFSGSEDGNVRAWDLMSKKC 180

Query: 67  VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPP 126
           VATL  H S VTS+ I+ DG TL++AGRDKVV++W+L +Y+CK TV TYE++EAV  I  
Sbjct: 181 VATLG-HESTVTSIDISEDGWTLLTAGRDKVVHVWNLHNYTCKKTVLTYEVLEAVLVIHS 239

Query: 127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFE 185
            S F S + S++++  ++   S EI+FITVGERG+VR+W+++SA CL+EQKSSDV  S +
Sbjct: 240 SSDFASCVGSFSKKR-EETSASSEIYFITVGERGVVRLWSSESAVCLFEQKSSDV--STK 296

Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
           MD+  RGFTAA +LPSN+GLLCVTADQQ + Y+ V+  + +M LI+S+RL+GYNEEI+D+
Sbjct: 297 MDEGNRGFTAAVLLPSNRGLLCVTADQQFIFYSPVKTLKDEMSLIISRRLIGYNEEIVDM 356

Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
           KFLG++EQ+LAVATN+E ++VYD++SMSCSY+LAGH+EIVLCLD+C  SSG  LIVTGSK
Sbjct: 357 KFLGDDEQFLAVATNVEHIRVYDIASMSCSYILAGHTEIVLCLDSCVSSSGCTLIVTGSK 416

Query: 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE 365
           DN+VRLWD ES+ C+GVG GHMGAVGAVAFSKK ++F VSGSSD T+KVWSFDGL++D  
Sbjct: 417 DNNVRLWDVESKTCIGVGVGHMGAVGAVAFSKKRRDFFVSGSSDRTLKVWSFDGLAEDES 476

Query: 366 QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGI 425
           +P+NLKAKA+VAAH KDINS+AVAPNDSLVC+GSQDRTACVWRLPDLVSVV  RGHKRGI
Sbjct: 477 RPVNLKAKAIVAAHDKDINSIAVAPNDSLVCSGSQDRTACVWRLPDLVSVVVLRGHKRGI 536

Query: 426 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD 485
           WSVEFSPVDQ V+TASGDKTIKIW+ISDGSCLKTFEGH SSVLRASFLTRG Q+VSCGAD
Sbjct: 537 WSVEFSPVDQCVVTASGDKTIKIWAISDGSCLKTFEGHMSSVLRASFLTRGTQLVSCGAD 596

Query: 486 GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAF 545
           G V L+TV+T E IA YD+HEDK+WALAVGKKTEM ATGGSD  VNLW+DSTA ++EEA 
Sbjct: 597 GSVMLFTVKTEERIAVYDQHEDKVWALAVGKKTEMLATGGSDGAVNLWYDSTALDKEEAL 656

Query: 546 RKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALH 605
           RKEEE VL+GQELENAV DADYTKAIQ+AFELRRPH+L+ LF+ +C K ++E  + K+L 
Sbjct: 657 RKEEEGVLKGQELENAVSDADYTKAIQIAFELRRPHRLYVLFSELCSKNDSENHVGKSLS 716

Query: 606 ALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYT 665
           ALGKEE R L EY+REWNTKPKLCHVAQFVLF+ F+I PPTEI E+KGI ++LEGLIPY+
Sbjct: 717 ALGKEEFRLLFEYLREWNTKPKLCHVAQFVLFRAFSILPPTEISEVKGIGELLEGLIPYS 776

Query: 666 QRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEARE 700
           QRHFSRIDRLVRS+FLLDYTLTGMSVI+P+ +A +
Sbjct: 777 QRHFSRIDRLVRSSFLLDYTLTGMSVIQPENDAND 811

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	768
TAIR|locus:2148965	876	TOZ "AT5G16750" [Arabidopsis t	0.947	0.831	0.676	2.8e-272
UNIPROTKB|F1NM37	812	TBL3 "Uncharacterized protein"	0.863	0.816	0.392	4.3e-141
RGD|1305142	800	Tbl3 "transducin (beta)-like 3	0.678	0.651	0.393	1.5e-140
MGI|MGI:2384863	801	Tbl3 "transducin (beta)-like 3	0.684	0.656	0.395	1e-139
UNIPROTKB|F1Q065	803	TBL3 "Uncharacterized protein"	0.683	0.653	0.394	2.1e-139
UNIPROTKB|F1MNS4	800	TBL3 "Transducin beta-like pro	0.684	0.657	0.398	2.7e-139
UNIPROTKB|Q2KJJ5	800	TBL3 "Transducin beta-like pro	0.684	0.657	0.398	2.7e-139
UNIPROTKB|Q12788	808	TBL3 "Transducin beta-like pro	0.688	0.654	0.394	1.3e-137
ZFIN|ZDB-GENE-041114-104	898	tbl3 "transducin (beta)-like 3	0.658	0.563	0.440	3.2e-134
DICTYBASE|DDB_G0276283	902	utp13 "U3 snoRNP protein" [Dic	0.904	0.770	0.340	5.2e-120

TAIR|locus:2148965 TOZ "AT5G16750" [Arabidopsis thaliana (taxid:3702)]

 Score = 2618 (926.6 bits), Expect = 2.8e-272, P = 2.8e-272
 Identities = 501/741 (67%), Positives = 609/741 (82%)

Query:     7 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-- 64
             GADRKVLVWDVDGGFCTHYF+GHKGVVSSILFHPD++K++L SGSDDATVRVWDL AK  
Sbjct:   121 GADRKVLVWDVDGGFCTHYFRGHKGVVSSILFHPDSNKNILISGSDDATVRVWDLNAKNT 180

Query:    65 --KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 122
               KC+A ++KHFS VTS+A++ DG TL SAGRDKVVNLWDL DYSCK TV TYE++EAV 
Sbjct:   181 EKKCLAIMEKHFSAVTSIALSEDGLTLFSAGRDKVVNLWDLHDYSCKATVATYEVLEAVT 240

Query:   123 AIPPGSAFDSFLSSYNQQTIKKKRR-SLEIHFITVGERGIVRMWNAD-SACLYEQKSSDV 180
              +  G+ F SF++S +Q+  KKK   S   +FITVGERG+VR+W ++ S CLYEQKSSD+
Sbjct:   241 TVSSGTPFASFVASLDQKKSKKKESDSQATYFITVGERGVVRIWKSEGSICLYEQKSSDI 300

Query:   181 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 240
             T+S + ++SKRGFTAA +LPS+ GLLCVTADQQ   Y+ VE  E+  EL+LSKRLVGYNE
Sbjct:   301 TVSSDDEESKRGFTAAAMLPSDHGLLCVTADQQFFFYSVVENVEET-ELVLSKRLVGYNE 359

Query:   241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILI 300
             EI D+KFLG+EEQ+LAVATN+E+V+VYD+++MSCSYVLAGH E+VL LDTC  SSG +LI
Sbjct:   360 EIADMKFLGDEEQFLAVATNLEEVRVYDVATMSCSYVLAGHKEVVLSLDTCVSSSGNVLI 419

Query:   301 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 360
             VTGSKD +VRLW++ S+ C+GVGTGH G + AVAF+KK  +F VSGS D T+KVWS DG+
Sbjct:   420 VTGSKDKTVRLWNATSKSCIGVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSLDGI 479

Query:   361 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 420
             S+D+E+P+NLK ++VVAAH KDINS+AVA NDSLVCTGS+DRTA +WRLPDLV VVT +G
Sbjct:   480 SEDSEEPINLKTRSVVAAHDKDINSVAVARNDSLVCTGSEDRTASIWRLPDLVHVVTLKG 539

Query:   421 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 480
             HKR I+SVEFS VDQ V+TASGDKT+KIW+ISDGSCLKTFEGHTSSVLRASF+T G Q V
Sbjct:   540 HKRRIFSVEFSTVDQCVMTASGDKTVKIWAISDGSCLKTFEGHTSSVLRASFITDGTQFV 599

Query:   481 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXX 540
             SCGADGL+KLW V T ECIATYD+HEDK+WALAVGKKTEM ATGG DA++NLWHDST   
Sbjct:   600 SCGADGLLKLWNVNTSECIATYDQHEDKVWALAVGKKTEMIATGGGDAVINLWHDSTASD 659

Query:   541 XXXXXXXXXXXVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQI 600
                        +LRGQELENAVLDA+YTKAI++AFEL RPHK+FELF+ +CRKR+++ QI
Sbjct:   660 KEDDFRKEEEAILRGQELENAVLDAEYTKAIRLAFELCRPHKVFELFSGLCRKRDSDEQI 719

Query:   601 EKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEG 660
              KAL  L KEE R L EYVREWNTKPKLCH+AQFVL++ FNI PPTEI+++KGI ++LEG
Sbjct:   720 VKALQGLEKEEFRLLFEYVREWNTKPKLCHIAQFVLYKTFNILPPTEIVQVKGIGELLEG 779

Query:   661 LIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDT-EAR----EVKAESLVDSNVHQDA 715
             LIPY+QRHFSRIDR VRS+FLLDYTL  MSVI+P+T E      E K E  V + + QD 
Sbjct:   780 LIPYSQRHFSRIDRFVRSSFLLDYTLGEMSVIDPETVETEYPKDEKKKEKDVIAAMEQDT 839

Query:   716 NDVVI-TENVAKEQIESEGKT 735
             +++   T +  ++  +S+GK+
Sbjct:   840 DELKQETPSRKRKSQKSKGKS 860

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006364 "rRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0009880 "embryonic pattern specification" evidence=RCA;IMP

GO:0051301 "cell division" evidence=RCA;IMP

GO:0001510 "RNA methylation" evidence=RCA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0048366 "leaf development" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

UNIPROTKB|F1NM37 TBL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1380 (490.8 bits), Expect = 4.3e-141, P = 4.3e-141
 Identities = 273/695 (39%), Positives = 415/695 (59%)

Query:     7 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
             G D  + +WD+   +CTH  KG  GVV  + FHPD  +  LFS S D  +R+WDL + KC
Sbjct:   129 GCDSTIKIWDMIKQYCTHNLKGSSGVVHLVEFHPDISRLQLFSSSMDYKIRIWDLNSSKC 188

Query:    67 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPP 126
             VA LD HFS VTS+A T+DG+TLIS+GRDK+  +W+L+      T+P YE VEA   +P 
Sbjct:   189 VAVLDGHFSAVTSLAFTADGNTLISSGRDKICMVWNLKTRESIRTIPIYESVEAAVLLPE 248

Query:   127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSACLYEQKSSDVTISFE 185
                F       +Q  +KK+     +HF+T G +G++++W  A +AC+Y Q      +  E
Sbjct:   249 QGDF-------SQLGVKKQG----LHFLTAGSKGVLKVWEVATAACVYSQPVPFEPVESE 297

Query:   186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
              + S+   T   ++P    ++ V+ +  ++ Y           L L K+L GYN+E+LD+
Sbjct:   298 EEASEHSLTHCMLVPERNEIVTVSVEHNIVFYDA-------QTLQLRKQLAGYNDEVLDV 350

Query:   246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
             KFLG  + ++ VATN  Q++V++LS+  C  +L GH+E +L LD      G ++ V+ +K
Sbjct:   351 KFLGPGDSHIVVATNSPQLKVFELSTSHCQ-ILYGHTETILALDV--FRKG-LMFVSCAK 406

Query:   306 DNSVRLW--DSESRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF-DGLS 361
             D S+R+W  + + R  CV  G GH   VGAV+ S+  ++F+V+ S D TIKVW+  + L+
Sbjct:   407 DKSIRVWRMNKDGRVVCVAQGLGHAHGVGAVSCSRLKESFVVTSSQDCTIKVWNIPESLT 466

Query:   362 DDAEQ-----PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV 416
               A+      P  L A+     H KDINS+AV+PND L+ TGSQDR A +W  PD   + 
Sbjct:   467 SKAKAALISGPETLHAQMTERGHDKDINSVAVSPNDKLIATGSQDRLAKLWSCPDCSLLG 526

Query:   417 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476
              F GHKRGIW V+FSPVDQ++ T+S D T+K+W + D SCLKTFEGH +SVL+  F++RG
Sbjct:   527 VFTGHKRGIWCVQFSPVDQILATSSADGTLKLWGLQDFSCLKTFEGHDASVLKIIFVSRG 586

Query:   477 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536
              Q++S G+DGL+KLWT++T EC+ T D HEDKIW L   K+ +M  T  SD+ + LW D 
Sbjct:   587 TQLLSGGSDGLLKLWTIKTNECVKTLDGHEDKIWGLHTNKQDDMVVTASSDSSITLWKDV 646

Query:   537 TXXXXXXXXXXXXXXVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREA 596
             T              +++ QEL N + +  Y KA+ +A  L RPH +  +  ++ ++ + 
Sbjct:   647 TEIEQEEAQAKREEQIMKEQELSNLLHEKRYLKALGLAISLDRPHTVLTVIKAILKESDG 706

Query:   597 ELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISD 656
               ++E+ +  L K++   +L ++  WNT  + CH AQ V+  L     P  +++  GI  
Sbjct:   707 RKRLEENIARLRKDQKEAVLTFLVTWNTNSRNCHEAQAVIETLLKHEAPDNLLQYSGIKS 766

Query:   657 VLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSV 691
              +E L+PYT+RHF R+ RL++++  +D+    M +
Sbjct:   767 AVESLLPYTERHFQRLSRLLQASMFIDFMWQNMKL 801

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

RGD|1305142 Tbl3 "transducin (beta)-like 3" [Rattus norvegicus (taxid:10116)]

 Score = 1046 (373.3 bits), Expect = 1.5e-140, Sum P(2) = 1.5e-140
 Identities = 217/551 (39%), Positives = 330/551 (59%)

Query:   151 IHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVT 209
             +HF+T G++GI+R+W A S  C+Y Q         +M   ++  T  T+  +   LL VT
Sbjct:   260 LHFLTAGDQGILRVWEAASGQCVYTQP--------QMSGLRQELTHCTLARAAGLLLTVT 311

Query:   210 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 269
             AD  LLLY       +   L L K+  GY+EE+LD++FLG  + ++ VA+N   ++V++L
Sbjct:   312 ADHNLLLY-------EARSLQLQKQFAGYSEEVLDVRFLGPNDSHIIVASNSPCLKVFEL 364

Query:   270 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGVGTGH 326
              +++C  +L GH++IVL LD      G  L  + +KD S+R+W         CV  G+GH
Sbjct:   365 QTLACQ-ILHGHTDIVLALDV--FRKGW-LFASCAKDQSIRIWRMNKAGQVACVAQGSGH 420

Query:   327 MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF-DGL-----SDDAEQPMNLKAKAVVAAHG 380
               +VG +  S+  ++FLV+GS D T+K+W   + L     + D +  + L+A++    H 
Sbjct:   421 THSVGTICCSRLKESFLVTGSQDCTVKLWPLPEALPSKNTASDGDL-IPLQAQSTQRCHD 479

Query:   381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440
             KDINSLAV+PND L+ TGSQDRTA +W LP    +  F GH+RG+W+V+FSP DQV+ TA
Sbjct:   480 KDINSLAVSPNDKLLATGSQDRTAKLWALPQCQLLGVFSGHRRGLWNVQFSPTDQVLATA 539

Query:   441 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 500
             S D TIK+W++ D SCLKTFEGH +SVL+ +F++RGAQ++S G+DGL+KLWT+++ EC+ 
Sbjct:   540 SADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGAQLLSSGSDGLLKLWTIKSNECVR 599

Query:   501 TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQELEN 560
             T D HEDK+W L   +  +   TGGSD+ + LW D T              V++ QEL+N
Sbjct:   600 TLDAHEDKVWGLHCSRLDDHAITGGSDSRIILWKDVTEAEQAEEQAKREEQVIKQQELDN 659

Query:   561 AVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVR 620
              + +  Y +A+ +A  L RPH +  +  ++ R  EA  ++E  +  L +++   LL +  
Sbjct:   660 LLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACEKLEATVLRLRRDQKEALLRFCI 719

Query:   621 EWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTF 680
              WNT  + CH AQ VL  L     P E++   G+   LE L+PYT+RHF R+ R +++  
Sbjct:   720 TWNTNSRHCHEAQAVLGVLLRHEAPEELLAYDGVRGALEALLPYTERHFQRLSRTLQAAT 779

Query:   681 LLDYTLTGMSV 691
              LD+    M +
Sbjct:   780 FLDFLWHNMKL 790

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

MGI|MGI:2384863 Tbl3 "transducin (beta)-like 3" [Mus musculus (taxid:10090)]

 Score = 1052 (375.4 bits), Expect = 1.0e-139, Sum P(2) = 1.0e-139
 Identities = 219/554 (39%), Positives = 332/554 (59%)

Query:   147 RSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 205
             +S  +HF+T G++GI+R+W A S  C+Y Q         +M   ++  T  T+  +   L
Sbjct:   256 KSSGLHFLTAGDQGILRVWEAASGQCVYTQP--------QMPGLRQELTHCTLARAADLL 307

Query:   206 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 265
             L VTAD  LLLY       +   L L K+  GY+EE+LD++FLG  + ++ VA+N   ++
Sbjct:   308 LTVTADHNLLLY-------EAHSLQLQKQFAGYSEEVLDVRFLGPSDSHIVVASNSPCLK 360

Query:   266 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGV 322
             V++L +++C  +L GH++IVL LD      G  L  + +KD S+R+W         CV  
Sbjct:   361 VFELQTLACQ-ILHGHTDIVLALDV--FRKGW-LFASCAKDQSIRIWKMNKAGQVACVAQ 416

Query:   323 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF-DGL---SDDAEQ-PMNLKAKAVVA 377
             G+GH  +VG +  S+  ++FLV+GS D T+K+W   + L   S  A+  P+ L+A+    
Sbjct:   417 GSGHTHSVGTICCSRLKESFLVTGSQDCTVKLWPLPEALLAKSTAADSGPVLLQAQTTRR 476

Query:   378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 437
              H KDINSLAV+PND L+ TGSQDRTA +W LP    +  F GH+RG+W+V+FSP DQV+
Sbjct:   477 CHDKDINSLAVSPNDKLLATGSQDRTAKLWALPQCQLLGVFTGHRRGLWNVQFSPTDQVL 536

Query:   438 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 497
              TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RG+Q++S G+DGL+KLWT+++ E
Sbjct:   537 ATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGSQLLSSGSDGLLKLWTIKSNE 596

Query:   498 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQE 557
             C+ T D HEDK+W L   +  +   TGGSD+ + LW D T              V++ QE
Sbjct:   597 CVRTLDAHEDKVWGLHCSQLDDHAITGGSDSRIILWKDVTEAEQAEEQAKREEQVIKQQE 656

Query:   558 LENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLE 617
             L+N + +  Y +A+ +A  L RPH +  +  ++ R  EA  ++E  +  L +++   LL 
Sbjct:   657 LDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACEKLEATVLRLRRDQKEALLR 716

Query:   618 YVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVR 677
             +   WNT  + CH AQ VL  L     P E++   G+   LE L+PYT+RHF R+ R ++
Sbjct:   717 FCVTWNTNSRHCHEAQAVLGVLLRHEAPEELLAYDGVRGSLEALLPYTERHFQRLSRTLQ 776

Query:   678 STFLLDYTLTGMSV 691
             +   LD+    M +
Sbjct:   777 AATFLDFLWHNMKL 790

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0032040 "small-subunit processome" evidence=IEA

UNIPROTKB|F1Q065 TBL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1039 (370.8 bits), Expect = 2.1e-139, Sum P(2) = 2.1e-139
 Identities = 220/557 (39%), Positives = 328/557 (58%)

Query:   147 RSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 205
             +S  +HF+T G++G++R+W A S  C+Y Q         +    ++G T  T+  S   L
Sbjct:   253 KSKGLHFLTAGDQGLLRVWEAASGQCVYAQP--------QPPGPRQGLTHCTLAQSAGLL 304

Query:   206 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 265
             L VT D  LLLY       +   L L K+  GY+EE+LD++FLG E+ ++ VA+N   ++
Sbjct:   305 LSVTTDHNLLLY-------EARSLQLQKQFAGYSEEVLDVRFLGPEDSHIVVASNSPSLK 357

Query:   266 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW--DSESR-CCVGV 322
             V++L +M+C  +L GH++IVL LD      G+ L  + +KD S+ +W  +   R  CV  
Sbjct:   358 VFELQTMTCQ-ILHGHTDIVLALDV--FRKGR-LFASCAKDQSICIWRMNKAGRVACVAQ 413

Query:   323 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD------GLSDDAEQPMNLKAKAVV 376
             G+GH  +VG +  S+  + FLV+GS D T+K+W         G + D+  P+ L+A+A  
Sbjct:   414 GSGHTHSVGTICCSRLKETFLVTGSQDCTVKLWPIPEALLSKGTAPDSG-PILLQAQATQ 472

Query:   377 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV 436
               H KDINS+AVAPND L+ TGSQDRTA +W LP    +  F GH+RG+W V+FSP+DQV
Sbjct:   473 RCHDKDINSVAVAPNDKLLATGSQDRTAKLWALPHCQLLGIFSGHRRGLWCVQFSPMDQV 532

Query:   437 VITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVS--CGADGLVKLWTVR 494
             + TAS D TIK+W++ D SCLKTFEGH +SVL+  F++RG Q++S   G+DGLVKLWT++
Sbjct:   533 LATASADGTIKLWALQDFSCLKTFEGHDASVLKVVFVSRGTQLLSRPSGSDGLVKLWTIK 592

Query:   495 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLR 554
               EC+ T D HEDK+W L   +  +   TG SD+ V LW D T              V++
Sbjct:   593 NNECVKTLDAHEDKVWGLHCSRLDDRALTGASDSCVILWKDVTEEEQSEEQARREEEVVK 652

Query:   555 GQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQ 614
              QEL+N + +  Y +A+ +A  L RPH +  +  ++ R  EA  ++   +  L +++   
Sbjct:   653 QQELDNLLYEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACKKLGATVLRLRRDQKEA 712

Query:   615 LLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDR 674
             LL +   WNT  + CH AQ VL  L     P E++   G+   LE L+PYT+RHF R+ R
Sbjct:   713 LLRFCVTWNTNSRHCHEAQAVLGVLLRHEAPEELLAYPGVQASLEALLPYTERHFQRLSR 772

Query:   675 LVRSTFLLDYTLTGMSV 691
              +++   LD+    M +
Sbjct:   773 TLQAATFLDFLWHNMKL 789

GO:0005730 "nucleolus" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|F1MNS4 TBL3 "Transducin beta-like protein 3" [Bos taurus (taxid:9913)]

 Score = 1046 (373.3 bits), Expect = 2.7e-139, Sum P(2) = 2.7e-139
 Identities = 221/554 (39%), Positives = 328/554 (59%)

Query:   147 RSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 205
             +S  +HF+T G++G +R+W A S  C++ Q+         +    R  T  T+  +   L
Sbjct:   256 KSAGLHFLTAGDQGALRVWEAASGRCVHAQQ--------RLRGPGRELTHCTLAHAAGLL 307

Query:   206 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 265
             L VTAD  LLLY           L L K+  GY+EE+LD++FLG E+ ++ VA+N   ++
Sbjct:   308 LSVTADHNLLLYDA-------HSLRLRKQFAGYSEEVLDVRFLGPEDSHVVVASNSPCLK 360

Query:   266 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW---DSESRCCVGV 322
             V+DL + +C  +L GH++IVL LD      G+ L  + +KD S+R+W    S    CV  
Sbjct:   361 VFDLQTSACQ-ILHGHTDIVLALDV--FRKGR-LFASCAKDQSIRVWRMNKSGEVACVAQ 416

Query:   323 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG--LSDDAEQ---PMNLKAKAVVA 377
             G+GH  +VG +  S+  + FLV+GS D T+K+W      LS        P+ L+A+A   
Sbjct:   417 GSGHTHSVGTICCSRLKETFLVTGSQDCTVKLWPLPEALLSKGTGHEGGPVFLQAQATQR 476

Query:   378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 437
              H KDINS+AVAPND L+ TGSQDRTA +W LP    + TF GH+RG+W V+FSP+DQV+
Sbjct:   477 CHDKDINSVAVAPNDKLLATGSQDRTAKLWALPRCQLLGTFSGHRRGLWCVQFSPMDQVL 536

Query:   438 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 497
              TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RG Q++S G+DGL+KLWT++  E
Sbjct:   537 ATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLLKLWTIKNNE 596

Query:   498 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQE 557
             C+ T D HEDK+W L   +  +   TG SD+ V LW D T              V++ QE
Sbjct:   597 CVRTLDAHEDKVWGLHCSRLDDRALTGASDSRVVLWKDVTEAEQAEEQAKREEQVVKQQE 656

Query:   558 LENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLE 617
             L+N + +  Y +A+ +A  L RPH +  +  ++ R  E+  ++E  +  L +++   LL 
Sbjct:   657 LDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPESCEKLETTVLQLRRDQKEALLR 716

Query:   618 YVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVR 677
             +   WNT  + CH AQ VL  L     P E++   G+   LEGL+PYT+RHF R+ R+++
Sbjct:   717 FCVTWNTNSRHCHEAQAVLGVLLRHEAPDELLTYDGVRASLEGLLPYTERHFQRLSRMLQ 776

Query:   678 STFLLDYTLTGMSV 691
             +   LD+    M +
Sbjct:   777 AATFLDFLWHNMKL 790

GO:0005730 "nucleolus" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|Q2KJJ5 TBL3 "Transducin beta-like protein 3" [Bos taurus (taxid:9913)]

 Score = 1046 (373.3 bits), Expect = 2.7e-139, Sum P(2) = 2.7e-139
 Identities = 221/554 (39%), Positives = 328/554 (59%)

Query:   147 RSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 205
             +S  +HF+T G++G +R+W A S  C++ Q+         +    R  T  T+  +   L
Sbjct:   256 KSAGLHFLTAGDQGALRVWEAASGRCVHAQQ--------RLRGPGRELTHCTLAHAAGLL 307

Query:   206 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 265
             L VTAD  LLLY           L L K+  GY+EE+LD++FLG E+ ++ VA+N   ++
Sbjct:   308 LSVTADHNLLLYDA-------RSLRLRKQFAGYSEEVLDVRFLGPEDSHVVVASNSPCLK 360

Query:   266 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW---DSESRCCVGV 322
             V+DL + +C  +L GH++IVL LD      G+ L  + +KD S+R+W    S    CV  
Sbjct:   361 VFDLQTSACQ-ILHGHTDIVLALDV--FRKGR-LFASCAKDQSIRVWRMNKSGEVACVAQ 416

Query:   323 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG--LSDDAEQ---PMNLKAKAVVA 377
             G+GH  +VG +  S+  + FLV+GS D T+K+W      LS        P+ L+A+A   
Sbjct:   417 GSGHTHSVGTICCSRLKETFLVTGSQDCTVKLWPLPEALLSKGTGHEGGPVFLQAQATQH 476

Query:   378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 437
              H KDINS+AVAPND L+ TGSQDRTA +W LP    + TF GH+RG+W V+FSP+DQV+
Sbjct:   477 CHDKDINSVAVAPNDKLLATGSQDRTAKLWALPRCQLLGTFSGHRRGLWCVQFSPMDQVL 536

Query:   438 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 497
              TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RG Q++S G+DGL+KLWT++  E
Sbjct:   537 ATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLLKLWTIKNNE 596

Query:   498 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQE 557
             C+ T D HEDK+W L   +  +   TG SD+ V LW D T              V++ QE
Sbjct:   597 CVRTLDAHEDKVWGLHCSRLDDRALTGASDSRVVLWKDVTEAEQAEEQAKREEQVVKQQE 656

Query:   558 LENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLE 617
             L+N + +  Y +A+ +A  L RPH +  +  ++ R  E+  ++E  +  L +++   LL 
Sbjct:   657 LDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPESCEKLETTVLQLRRDQKEALLR 716

Query:   618 YVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVR 677
             +   WNT  + CH AQ VL  L     P E++   G+   LEGL+PYT+RHF R+ R+++
Sbjct:   717 FCVTWNTNSRHCHEAQAVLGVLLRHEAPDELLTYDGVRASLEGLLPYTERHFQRLSRMLQ 776

Query:   678 STFLLDYTLTGMSV 691
             +   LD+    M +
Sbjct:   777 AATFLDFLWHNMKL 790

GO:0005730 "nucleolus" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|Q12788 TBL3 "Transducin beta-like protein 3" [Homo sapiens (taxid:9606)]

 Score = 1028 (366.9 bits), Expect = 1.3e-137, Sum P(2) = 1.3e-137
 Identities = 220/557 (39%), Positives = 324/557 (58%)

Query:   147 RSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 205
             +S  ++F+T G++G +R+W A S  C+Y Q         E+       TA  VL +    
Sbjct:   256 KSPGLYFLTAGDQGTLRVWEAASGQCVYTQAQPPGP-GQELTHCTLAHTAGVVLTA---- 310

Query:   206 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 265
                TAD  LLLY       +   L L K+  GY+EE+LD++FLG E+ ++ VA+N   ++
Sbjct:   311 ---TADHNLLLY-------EARSLRLQKQFAGYSEEVLDVRFLGPEDSHVVVASNSPCLK 360

Query:   266 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGV 322
             V++L + +C  +L GH++IVL LD      G  L  + +KD SVR+W         CV  
Sbjct:   361 VFELQTSACQ-ILHGHTDIVLALDV--FRKGW-LFASCAKDQSVRIWRMNKAGQVMCVAQ 416

Query:   323 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG--LSDDAEQ---PMNLKAKAVVA 377
             G+GH  +VG V  S+  ++FLV+GS D T+K+W      LS +      P+ L+A+    
Sbjct:   417 GSGHTHSVGTVCCSRLKESFLVTGSQDCTVKLWPLPKALLSKNTAPDNGPILLQAQTTQR 476

Query:   378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 437
              H KDINS+A+APND L+ TGSQDRTA +W LP    +  F GH+RG+W V+FSP+DQV+
Sbjct:   477 CHDKDINSVAIAPNDKLLATGSQDRTAKLWALPQCQLLGVFSGHRRGLWCVQFSPMDQVL 536

Query:   438 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 497
              TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RG Q++S G+DGLVKLWT++  E
Sbjct:   537 ATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLVKLWTIKNNE 596

Query:   498 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQE 557
             C+ T D HEDK+W L   +  +   TG SD+ V LW D T              V+R QE
Sbjct:   597 CVRTLDAHEDKVWGLHCSRLDDHALTGASDSRVILWKDVTEAEQAEEQARQEEQVVRQQE 656

Query:   558 LENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLE 617
             L+N + +  Y +A+ +A  L RPH +  +  ++ R  EA  ++E  +  L +++   LL 
Sbjct:   657 LDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACEKLEATMLRLRRDQKEALLR 716

Query:   618 YVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVR 677
             +   WNT  + CH AQ VL  L     P E++  +G+   LE L+PYT+RHF R+ R ++
Sbjct:   717 FCVTWNTNSRHCHEAQAVLGVLLRREAPEELLAYEGVRAALEALLPYTERHFQRLSRTLQ 776

Query:   678 STFLLDYTLTGMSVIEP 694
             +   LD+    M +  P
Sbjct:   777 AAAFLDFLWHNMKLPVP 793

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0005057 "receptor signaling protein activity" evidence=TAS

GO:0007199 "G-protein coupled receptor signaling pathway coupled to cGMP nucleotide second messenger" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

ZFIN|ZDB-GENE-041114-104 tbl3 "transducin (beta)-like 3" [Danio rerio (taxid:7955)]

 Score = 1198 (426.8 bits), Expect = 3.2e-134, Sum P(2) = 3.2e-134
 Identities = 237/538 (44%), Positives = 350/538 (65%)

Query:     7 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
             G D  + +WDV   +CTH  KG  GVV  + FHPD  +  LFS S D  +R+WDL + +C
Sbjct:   125 GCDGTIKLWDVIKQYCTHNLKGSSGVVHLVEFHPDISRLQLFSSSSDCAIRIWDLRSSRC 184

Query:    67 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPP 126
             V  L+ H+S VT++A + DG TL+S+GRDK+ ++WDL++   K T+P YE VE V  +  
Sbjct:   185 VCVLESHYSPVTALAFSPDGHTLVSSGRDKICSVWDLQEQKVKRTIPVYEAVEGVVLLS- 243

Query:   127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFE 185
             GSA       Y++  +K    S  +H +T G +G++R+W++ S+ C++ Q   D +   E
Sbjct:   244 GSA------DYSEMGVK----SDALHLVTAGSKGVLRVWDSSSSRCVFTQTLPDASSHTE 293

Query:   186 MDDS----KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE 241
              +D+    + G     +LP    L+ VTA+  +LLY T   P     L + ++ VGYN++
Sbjct:   294 DEDAEDEERLGLLQLLLLPRTGRLITVTAEHNILLYQT---PT----LAVQQQFVGYNDD 346

Query:   242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV 301
             +LD+KF+G+++ ++AVATN  Q++V++LS+ SC  +L GH++ +L +D     S   +  
Sbjct:   347 VLDVKFVGKDDTHIAVATNSSQLKVFELSTNSCQ-ILHGHTDTILSIDVFRKGS---MFA 402

Query:   302 TGSKDNSVRLW--D-SESRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 357
             T +KD SVR+W  D S  R  CV  GTGH  AVG++A S+  Q F+VSGS D T+KVW  
Sbjct:   403 TCAKDKSVRVWRMDVSSGRVHCVAQGTGHSNAVGSIACSRMKQQFVVSGSQDCTVKVWDL 462

Query:   358 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT 417
                +  AE  M +KA++   AH KD+NS+ V+PND L+ +GSQDRTA +W L DL  +  
Sbjct:   463 PETTG-AEGVMMMKARSTERAHEKDVNSVCVSPNDKLLASGSQDRTAKLWALSDLRLLGV 521

Query:   418 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA 477
              RGH+RG+WSV+FSPVDQ++ +AS D +++IWSI D SCLKTFEGH +SVL+  F++RG 
Sbjct:   522 CRGHRRGVWSVQFSPVDQILGSASADGSVRIWSIQDFSCLKTFEGHDASVLKIIFVSRGT 581

Query:   478 QIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 535
             Q+VS G+DGLVKLWT++T EC+ T D H+DK+WAL  G + E+  TG +D+ + +W D
Sbjct:   582 QLVSSGSDGLVKLWTIKTNECVRTLDAHQDKVWALHGGCRDELMVTGSADSTITVWTD 639

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0010564 "regulation of cell cycle process" evidence=IMP

GO:0030098 "lymphocyte differentiation" evidence=IMP

GO:0048538 "thymus development" evidence=IMP

DICTYBASE|DDB_G0276283 utp13 "U3 snoRNP protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 1181 (420.8 bits), Expect = 5.2e-120, P = 5.2e-120
 Identities = 253/743 (34%), Positives = 421/743 (56%)

Query:     8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
             +D+ V VWD++ G+CTH F+ H  VV+ + FHP   K  L +   D  +RV+DL+ K+CV
Sbjct:   149 SDKTVKVWDLEKGYCTHNFQ-HDDVVTMLKFHPTLLK--LVTVCLDLNIRVYDLVTKECV 205

Query:    68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPG 127
               L  H S+++ +  ++ G  LIS+GRDKV+N+WD+   + K T+P Y+ +  +  +P  
Sbjct:   206 I-LTNHLSQISGITFSNSGKELISSGRDKVLNVWDMLSKNPKKTIPIYQELGGIITLPKE 264

Query:   128 SAFDSFL--SSYNQQTIKKKRRSLEIHF----------ITVGERGIVRMWNADSA-CLYE 174
             S ++S    S    + I++K +++  H           I +G   ++R W  ++  C++ 
Sbjct:   265 S-YNSLPENSKIKIEKIREKVKTMAAHADKIKNGDDITIVIGGEEVLRAWCTETGECIWN 323

Query:   175 QKSSDVTISFEMDDSKRG---FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELIL 231
              ++ +     + DD  +    +T ++++ +   ++ +T++  LL+Y    + E++ E+I 
Sbjct:   324 DQNIEFKKKTDNDDKDKTDTLYTISSIINNKDKIISITSEHNLLIYNGKTL-ERQGEII- 381

Query:   232 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTC 291
                  GYN+EI+D+K++ ++   + VATN  +++ YDL++     VL GH ++V+ +D  
Sbjct:   382 -----GYNDEIIDIKYINDDN--IIVATNSNEIKTYDLNTKRAQ-VLRGHEDLVMSVDVS 433

Query:   292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN--FLVSGSSD 349
             A   GK  I++GS+D S  +WD E +  +   TGH G +  VA  KK     F ++ S D
Sbjct:   434 A--DGKH-IISGSRDKSAMIWDLEKKESIAQLTGHTGVISCVALPKKPSTSMFAITASDD 490

Query:   350 HTIKVW------SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT 403
              TIK+W      S  G  D  ++   + A     AH KDINS+++APND +  T SQD  
Sbjct:   491 RTIKLWKGFSTTSSSGGDDSKKKDKKISASVTKIAHEKDINSISIAPNDKIFATASQDSY 550

Query:   404 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH 463
               +W + +L  + + + H+RG+W VEFSP+DQ  +T S D TIKIWS+SD +CLKT EGH
Sbjct:   551 VKLWNVNNLEPITSIKAHRRGVWHVEFSPIDQCFLTCSADGTIKIWSLSDYTCLKTLEGH 610

Query:   464 TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFAT 523
               SVL+ASF++ G QIVS  ++GL+KLW ++T EC+ T++ HE KIWAL+V K  E F T
Sbjct:   611 KGSVLKASFISFGMQIVSVASEGLIKLWNIKTNECLNTFEGHESKIWALSVAKDQERFIT 670

Query:   524 GGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQELENAVLDADYTKAIQVAFELRRPHKL 583
             GGSD+ +  W D T              VL  Q L+ A+   DY  A+++A  L +P + 
Sbjct:   671 GGSDSKLIAWKDHTEIELEIQKKKEENQVLYKQHLDTAIRKKDYYSALKLALVLDQPRQT 730

Query:   584 FELFASVCRKREA--ELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFN 641
               +F S+    ++  E  I+  +  L   E+ + L ++R+WNT  K   ++Q VL  +  
Sbjct:   731 LNIFNSMYYDDQSIGESVIQGCIGRLSPNEVVKCLRFIRDWNTNSKFVSISQIVLNSIIT 790

Query:   642 IHPPTEI--IEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAR 699
                P E+  + +  +  +LE +IPYT RHF RID++++ T+L+D+T+  ++         
Sbjct:   791 SFKPDELSKLSVGEMPKLLESIIPYTDRHFQRIDKMLQKTYLIDFTIQSINPAASTLSMD 850

Query:   700 EVKAESLVDSNVHQDANDVVITE 722
              V+  S +D N ++ + D +I E
Sbjct:   851 RVET-SHIDQN-YKKSLDQLIKE 871

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA;ISS

GO:0030515 "snoRNA binding" evidence=ISS

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8C4J7	TBL3_MOUSE	No assigned EC number	0.3994	0.8489	0.8139	yes	no
Q2KJJ5	TBL3_BOVIN	No assigned EC number	0.4077	0.8515	0.8175	yes	no
Q5U2W5	TBL3_RAT	No assigned EC number	0.4037	0.8489	0.815	yes	no
Q12788	TBL3_HUMAN	No assigned EC number	0.4031	0.8554	0.8131	yes	no
Q9USN3	UTP13_SCHPO	No assigned EC number	0.3280	0.8307	0.8211	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00013990001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (900 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00019376001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)				•	•		•		0.886
	GSVIVG00034559001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)				•	•		•	•	0.880
	GSVIVG00018070001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (540 aa)				•	•		•		0.878
	GSVIVG00000597001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (926 aa)			•	•	•		•	•	0.868
	GSVIVG00038815001	SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)				•	•		•		0.852
	GSVIVG00018638001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa)				•	•		•	•	0.845
	GSVIVG00037695001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa)				•	•		•		0.834
	GSVIVG00021349001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (905 aa)				•	•		•	•	0.831
	GSVIVG00005498001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_152, whole genome sho [...] (293 aa)				•	•		•		0.813
	GSVIVG00038090001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (182 aa)				•	•		•		0.813

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	768
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-63
pfam08625	138	pfam08625, Utp13, Utp13 specific WD40 associated d	5e-53
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-38
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-38
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-36
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-35
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-34
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-31
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-31
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-30
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-07
smart00320	40	smart00320, WD40, WD40 repeats	2e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-07
smart00320	40	smart00320, WD40, WD40 repeats	3e-07
smart00320	40	smart00320, WD40, WD40 repeats	7e-07
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	7e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-06
smart00320	40	smart00320, WD40, WD40 repeats	2e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-06
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-05
smart00320	40	smart00320, WD40, WD40 repeats	3e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-05
smart00320	40	smart00320, WD40, WD40 repeats	7e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-04
smart00320	40	smart00320, WD40, WD40 repeats	3e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-04
smart00320	40	smart00320, WD40, WD40 repeats	5e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	0.001
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  213 bits (545), Expect = 1e-63
 Identities = 96/303 (31%), Positives = 150/303 (49%), Gaps = 15/303 (4%)

Query: 231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDT 290
           L + L G+   +  + F   + + LA  +    ++V+DL +      L GH+  V  +  
Sbjct: 1   LRRTLKGHTGGVTCVAFS-PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 291 CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH 350
            A  +    + +GS D ++RLWD E+  CV   TGH   V +VAFS   +  L S S D 
Sbjct: 60  SADGT---YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDK 115

Query: 351 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 410
           TIKVW  +            K    +  H   +NS+A +P+ + V + SQD T  +W L 
Sbjct: 116 TIKVWDVE----------TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165

Query: 411 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA 470
               V T  GH   + SV FSP  + ++++S D TIK+W +S G CL T  GH + V   
Sbjct: 166 TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV 225

Query: 471 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALV 530
           +F   G  + S   DG +++W +RTGEC+ T   H + + +LA     +  A+G +D  +
Sbjct: 226 AFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285

Query: 531 NLW 533
            +W
Sbjct: 286 RIW 288

Length = 289

>gnl|CDD|204007 pfam08625, Utp13, Utp13 specific WD40 associated domain

 Score =  179 bits (457), Expect = 5e-53
 Identities = 56/136 (41%), Positives = 91/136 (66%), Gaps = 2/136 (1%)

Query: 556 QELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQ--IEKALHALGKEEIR 613
           QEL N + + DY++A+ +A  L  PH+L  +  SV    ++     +E+ +  L K+++ 
Sbjct: 2   QELSNLLREGDYSEALLLALTLDHPHRLLNVLKSVIEDEDSIGSDELEETIGRLRKDQLE 61

Query: 614 QLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRID 673
           +LL+++R+WNT  + CHVAQ VL  +    PP E++E+ G+ ++LE L+PYT+RHF R+D
Sbjct: 62  RLLKFIRDWNTNARTCHVAQLVLSVILRSFPPEELLEVPGLKEILEALLPYTERHFQRLD 121

Query: 674 RLVRSTFLLDYTLTGM 689
           RLV+ ++LLDYTL  M
Sbjct: 122 RLVQESYLLDYTLQEM 137

Utp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome. Pwp2 is capable of interacting directly with the 35 S pre-rRNA 5' end. Length = 138

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  144 bits (365), Expect = 2e-38
 Identities = 73/303 (24%), Positives = 130/303 (42%), Gaps = 40/303 (13%)

Query: 152 HFITVGERGIVRMWNADS----ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLC 207
              T    G +++W+ ++      L         ++                     L  
Sbjct: 23  LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA--------------SADGTYLAS 68

Query: 208 VTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY 267
            ++D+ + L+       +  E +  + L G+   +  + F   + + L+ ++  + ++V+
Sbjct: 69  GSSDKTIRLWDL-----ETGECV--RTLTGHTSYVSSVAFS-PDGRILSSSSRDKTIKVW 120

Query: 268 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM 327
           D+ +  C   L GH++ V      A S     + + S+D +++LWD  +  CV   TGH 
Sbjct: 121 DVETGKCLTTLRGHTDWVNS---VAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT 177

Query: 328 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 387
           G V +VAFS   +  L S SSD TIK+W               K    +  H   +NS+A
Sbjct: 178 GEVNSVAFSPDGEKLL-SSSSDGTIKLWDLSTG----------KCLGTLRGHENGVNSVA 226

Query: 388 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIK 447
            +P+  L+ +GS+D T  VW L     V T  GH   + S+ +SP  + + + S D TI+
Sbjct: 227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286

Query: 448 IWS 450
           IW 
Sbjct: 287 IWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  147 bits (370), Expect = 8e-38
 Identities = 106/390 (27%), Positives = 177/390 (45%), Gaps = 29/390 (7%)

Query: 152 HFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 211
             ++    G +++W+ D           +  S E          A   P    +L  ++ 
Sbjct: 79  LLLSGSSDGTIKLWDLD-------NGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131

Query: 212 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS 271
                  TV++ +      L + L G++E +  L F  + +   + ++    ++++DL +
Sbjct: 132 LD----GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187

Query: 272 MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGHMGAV 330
                 LAGH++ V  L       G +LI +GS D ++RLWD  + +      +GH  +V
Sbjct: 188 GKPLSTLAGHTDPVSSLA--FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245

Query: 331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 390
              +FS    + L SGSSD TI++W     S              ++ H   + S+A +P
Sbjct: 246 -VSSFSP-DGSLLASGSSDGTIRLWDLRSSS---------SLLRTLSGHSSSVLSVAFSP 294

Query: 391 NDSLVCTGSQDRTACVWRL--PDLVSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIK 447
           +  L+ +GS D T  +W L    L+S +T +GH+  + S+ FSP    +V   S D TI+
Sbjct: 295 DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354

Query: 448 IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED 507
           +W +  G  LKT EGH S+VL  SF   G  + S   DG V+LW + TG  +   D H  
Sbjct: 355 LWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTS 413

Query: 508 KIWALAVGKKTEMFATGGSDALVNLWHDST 537
           ++ +L      +  A+G SD  + LW   T
Sbjct: 414 RVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  137 bits (346), Expect = 6e-36
 Identities = 76/311 (24%), Positives = 126/311 (40%), Gaps = 53/311 (17%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
             D  + VWD++ G      KGH G V  +    D     L SGS D T+R+WDL   +C
Sbjct: 28  SGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY--LASGSSDKTIRLWDLETGEC 85

Query: 67  VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM-VEAVCAIP 125
           V TL  H S V+S+A + DG  L S+ RDK + +WD+    C  T+  +   V +V   P
Sbjct: 86  VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP 145

Query: 126 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER-GIVRMWNADSA-CLYEQKSSDVTIS 183
            G                         F+    + G +++W+  +  C+           
Sbjct: 146 DG------------------------TFVASSSQDGTIKLWDLRTGKCVA---------- 171

Query: 184 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEIL 243
             +        +    P  + LL  ++D  + L+                 L G+   + 
Sbjct: 172 -TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL-------STGKCLGTLRGHENGVN 223

Query: 244 DLKFLGEEEQYLAVATNIEQ-VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVT 302
            + F    + YL  + + +  ++V+DL +  C   L+GH+  V  L   A S     + +
Sbjct: 224 SVAFSP--DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL---AWSPDGKRLAS 278

Query: 303 GSKDNSVRLWD 313
           GS D ++R+WD
Sbjct: 279 GSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  139 bits (351), Expect = 3e-35
 Identities = 112/462 (24%), Positives = 190/462 (41%), Gaps = 55/462 (11%)

Query: 42  TDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 101
               LL +   D+ V + DL        L  H   +TS+A + DG  L+S   D  + LW
Sbjct: 37  ESGILLLALLSDSLVSLPDLS----SLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLW 92

Query: 102 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI 161
           DL +    +                  + +    S   +          I   +    G 
Sbjct: 93  DLDNGEKLIK-----------------SLEGLHDSSVSKLALSSPDGNSILLASSSLDGT 135

Query: 162 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLL-CVTADQQLLLYTTV 220
           V++W+          S+   +   ++      T+    P  + L    + D  + L+   
Sbjct: 136 VKLWD---------LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186

Query: 221 EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-SYVLA 279
                         L G+ + +  L F  +    +A  ++   ++++DLS+       L+
Sbjct: 187 TGKPLST-------LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS 239

Query: 280 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKK 338
           GHS+ V+     + S    L+ +GS D ++RLWD  S    +   +GH  +V +VAFS  
Sbjct: 240 GHSDSVVS----SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD 295

Query: 339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCT 397
               L SGSSD T+++W  +           L +   +  H   ++SL+ +P+   LV  
Sbjct: 296 G-KLLASGSSDGTVRLWDLETGK--------LLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346

Query: 398 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL 457
           GS D T  +W L     + T  GH   + SV FSP  +VV + S D T+++W +S GS L
Sbjct: 347 GSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL 405

Query: 458 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 499
           +  +GHTS V    F   G  + S  +D  ++LW ++T    
Sbjct: 406 RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKS 447

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  137 bits (346), Expect = 1e-34
 Identities = 90/336 (26%), Positives = 153/336 (45%), Gaps = 21/336 (6%)

Query: 211 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS 270
           +  +LL   +      +  + S  L G+ + I  + F   + + L   ++   ++++DL 
Sbjct: 37  ESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFS-PDGELLLSGSSDGTIKLWDLD 95

Query: 271 SMSCSY--VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGHM 327
           +       +   H   V  L   +     IL+ + S D +V+LWD  +    +    GH 
Sbjct: 96  NGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHS 155

Query: 328 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 387
            +V ++AFS   +      S D TIK+W               K  + +A H   ++SLA
Sbjct: 156 ESVTSLAFSPDGKLLASGSSLDGTIKLWDLR----------TGKPLSTLAGHTDPVSSLA 205

Query: 388 VAPNDS-LVCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 445
            +P+   L+ +GS D T  +W L    +   T  GH   + S  FSP   ++ + S D T
Sbjct: 206 FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGT 264

Query: 446 IKIWSI-SDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA--TY 502
           I++W + S  S L+T  GH+SSVL  +F   G  + S  +DG V+LW + TG+ ++  T 
Sbjct: 265 IRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL 324

Query: 503 DKHEDKIWALAVGKKTEMFATGGS-DALVNLWHDST 537
             HE  + +L+      +  +GGS D  + LW   T
Sbjct: 325 KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  122 bits (309), Expect = 5e-31
 Identities = 72/345 (20%), Positives = 132/345 (38%), Gaps = 58/345 (16%)

Query: 66  CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCK--LTVPTYEMVEAVCA 123
              TL  H   VT +A + DG  L +   D  + +WDL        L   T  + +    
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA- 59

Query: 124 IPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS 183
               SA  ++L                    +      +R+W+         ++ +   +
Sbjct: 60  ----SADGTYL-------------------ASGSSDKTIRLWDL--------ETGECVRT 88

Query: 184 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEIL 243
                S    ++    P  + L   + D+ + ++   +V   K        L G+ + + 
Sbjct: 89  LTGHTS--YVSSVAFSPDGRILSSSSRDKTIKVW---DVETGK----CLTTLRGHTDWVN 139

Query: 244 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 303
            + F   +  ++A ++    ++++DL +  C   L GH+  V      A S     +++ 
Sbjct: 140 SVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS---VAFSPDGEKLLSS 195

Query: 304 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 363
           S D +++LWD  +  C+G   GH   V +VAFS      L SGS D TI+VW        
Sbjct: 196 SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGSEDGTIRVWDLR----- 249

Query: 364 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 408
                  +    ++ H   + SLA +P+   + +GS D T  +W 
Sbjct: 250 -----TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  126 bits (316), Expect = 8e-31
 Identities = 101/446 (22%), Positives = 180/446 (40%), Gaps = 67/446 (15%)

Query: 26  FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-AKKCVATLD-KHFSRVTSMAIT 83
            +GH+  ++SI F PD    LL SGS D T+++WDL   +K + +L+  H S V+ +A++
Sbjct: 61  LRGHEDSITSIAFSPD--GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS 118

Query: 84  S-DGSTLISAG--RDKVVNLWDLRDYSCKLTV--PTYEMVEAVCAIPPGSAFDSFLSSYN 138
           S DG++++ A    D  V LWDL      +       E V ++   P             
Sbjct: 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP------------- 165

Query: 139 QQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATV 198
                      ++        G +++W+  +                +       ++   
Sbjct: 166 ---------DGKLLASGSSLDGTIKLWDLRTGKPLST----------LAGHTDPVSSLAF 206

Query: 199 LPSNQG-LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 257
            P     +   ++D  + L+        +  L               +     +   LA 
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL--------SGHSDSVVSSFSPDGSLLAS 258

Query: 258 ATNIEQVQVYDL-SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 316
            ++   ++++DL SS S    L+GHS  VL +   A S    L+ +GS D +VRLWD E+
Sbjct: 259 GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV---AFSPDGKLLASGSSDGTVRLWDLET 315

Query: 317 RCCVGVGT--GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 374
              +   T  GH G V +++FS      +  GS D TI++W                   
Sbjct: 316 GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE------- 368

Query: 375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 434
                  ++ S++ +P+  +V +GS D T  +W L     +    GH   + S++FSP  
Sbjct: 369 ----GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDG 424

Query: 435 QVVITASGDKTIKIWSISDGSCLKTF 460
           + + + S D TI++W +       +F
Sbjct: 425 KSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  125 bits (315), Expect = 1e-30
 Identities = 81/362 (22%), Positives = 142/362 (39%), Gaps = 44/362 (12%)

Query: 1   MFALLEGADRKVLVWDVDGGF-CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 59
           +       D  V +WD+          +GH   V+S+ F PD  K L    S D T+++W
Sbjct: 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLW 183

Query: 60  DLLAKKCVATLDKHFSRVTSMAITSDGSTLI-SAGRDKVVNLWDLRDYSCKLTVPTYEMV 118
           DL   K ++TL  H   V+S+A + DG  LI S   D  + LWDL       +  +    
Sbjct: 184 DLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD 243

Query: 119 EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 178
             V +  P  +                         +    G +R+W+           S
Sbjct: 244 SVVSSFSPDGSL----------------------LASGSSDGTIRLWDLR---------S 272

Query: 179 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 238
             ++   +        +    P  + L   ++D  + L+       +  +L+ S  L G+
Sbjct: 273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL-----ETGKLLSSLTLKGH 327

Query: 239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 298
              +  L F  +    ++  ++   ++++DL +      L GHS +     + + S    
Sbjct: 328 EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV----LSVSFSPDGR 383

Query: 299 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 358
           ++ +GS D +VRLWD  +   +    GH   V ++ FS      L SGSSD+TI++W   
Sbjct: 384 VVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPD-GKSLASGSSDNTIRLWDLK 442

Query: 359 GL 360
             
Sbjct: 443 TS 444

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 23/41 (56%), Positives = 26/41 (63%), Gaps = 2/41 (4%)

Query: 20 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 60
          G      KGH G V+S+ F PD   +LL SGSDD TVRVWD
Sbjct: 1  GKLLRTLKGHTGPVTSVAFSPDG--NLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 60
               KGH G V+S+ F PD     L SGSDD T+++WD
Sbjct: 4  LLKTLKGHTGPVTSVAFSPD--GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 415 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 450
           + T +GH   + SV FSP   ++ + S D T+++W 
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 415 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 450
           + T +GH   + SV FSP  + + + S D TIK+W 
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.8 bits (109), Expect = 7e-07
 Identities = 16/39 (41%), Positives = 20/39 (51%)

Query: 453 DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW 491
            G  LKT +GHT  V   +F   G  + S   DG +KLW
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 52.2 bits (125), Expect = 7e-07
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 27  KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDG 86
           +GH   V  + FHP    ++L S   D  V VWD+   K V  +  H  ++TS+    DG
Sbjct: 122 QGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180

Query: 87  STLISAGRDKVVNLWDLRD 105
           S L +  +DK +N+ D RD
Sbjct: 181 SLLCTTSKDKKLNIIDPRD 199

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 64  KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 102
            K + TL  H   VTS+A + DG+ L S   D  V +WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 454 GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW 491
           G  L+T +GHT  V   +F   G  + S   DG V++W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 64  KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 102
            + + TL  H   VTS+A + DG  L S   D  + LWD
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 317 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356
              +    GH G V +VAFS    N L SGS D T++VW 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 9/122 (7%)

Query: 420 GHKRGIWSVEFSPVD-QVVITASGDKTIKIWSI-SDG------SCLKTFEGHTSSVLRAS 471
           G +  I  V F+P D Q + TAS D TI  W I  +G        +   +GHT  V   S
Sbjct: 73  GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132

Query: 472 FLTRGAQIV-SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALV 530
           F      ++ S GAD +V +W V  G+ +     H D+I +L       +  T   D  +
Sbjct: 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192

Query: 531 NL 532
           N+
Sbjct: 193 NI 194

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356
           S   +    GH G V +VAFS     +L SGS D TIK+W 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 272 MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 313
                 L GH+  V      A S    L+ +GS D +VR+WD
Sbjct: 1   GKLLRTLKGHTGPVTS---VAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 271 SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 313
           S      L GH+  V      A S     + +GS D +++LWD
Sbjct: 1   SGELLKTLKGHTGPVTS---VAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 18/126 (14%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
           GAD  V VWDV+ G      K H   ++S+ +  + D SLL + S D  + + D      
Sbjct: 145 GADMVVNVWDVERGKAVEVIKCHSDQITSLEW--NLDGSLLCTTSKDKKLNIIDPRDGTI 202

Query: 67  VATLDKHFSRVTSMAITSDGSTLI-----SAGRDKVVNLWDLR-----------DYSCKL 110
           V++++ H S  +   + +    LI     S  + + + LWD R           D S  L
Sbjct: 203 VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSAL 262

Query: 111 TVPTYE 116
            +P ++
Sbjct: 263 FIPFFD 268

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 495 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
           +GE + T   H   + ++A     +  A+G  D  + LW 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 371 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 407
           K    +  H   + S+A +P+ +L+ +GS D T  VW
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 407
           + +    +  H   + S+A +P+   + +GS D T  +W
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 15/134 (11%)

Query: 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 384
           GH   VG V+F     N L S  +D  + VW       D E+    KA  V+  H   I 
Sbjct: 123 GHTKKVGIVSFHPSAMNVLASAGADMVVNVW-------DVERG---KAVEVIKCHSDQIT 172

Query: 385 SLAVAPNDSLVCTGSQDRTACVW--RLPDLVSVVTFRG---HKRGIWSVEFSPVDQVVIT 439
           SL    + SL+CT S+D+   +   R   +VS V        +R +W+     +  +  +
Sbjct: 173 SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCS 232

Query: 440 ASGDKTIKIWSISD 453
            S  + I +W    
Sbjct: 233 KSQQRQIMLWDTRK 246

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 9/39 (23%), Positives = 17/39 (43%)

Query: 496 GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
           G+ + T   H   + ++A      + A+G  D  V +W 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 40.8 bits (95), Expect = 0.003
 Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 29/199 (14%)

Query: 278 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 337
           LA  S++      C  S  K  + + + +  V++WD      V     H   V ++ +S 
Sbjct: 529 LASRSKLS---GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS 585

Query: 338 KLQNFLVSGSSDHTIKVWSFD-GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS--L 394
                L SGS D ++K+WS + G+S        +K KA +             P++S   
Sbjct: 586 ADPTLLASGSDDGSVKLWSINQGVSIG-----TIKTKANICC--------VQFPSESGRS 632

Query: 395 VCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSIS 452
           +  GS D     + L +  + + T  GH + +  V F  VD   ++++S D T+K+W +S
Sbjct: 633 LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF--VDSSTLVSSSTDNTLKLWDLS 690

Query: 453 ------DGSCLKTFEGHTS 465
                 + + L +F GHT+
Sbjct: 691 MSISGINETPLHSFMGHTN 709

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	768
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	99.98
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.98
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.98
KOG0643	327	consensus Translation initiation factor 3, subunit	99.98
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG1963	792	consensus WD40 repeat protein [General function pr	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
PF08625	141	Utp13: Utp13 specific WD40 associated domain; Inte	99.91
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
COG2319	466	FOG: WD40 repeat [General function prediction only	99.91
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG1963	792	consensus WD40 repeat protein [General function pr	99.9
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.89
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.88
COG2319	466	FOG: WD40 repeat [General function prediction only	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.88
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.85
KOG1188	376	consensus WD40 repeat protein [General function pr	99.84
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.84
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.83
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.83
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.83
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.82
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.82
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.82
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.82
KOG4227	609	consensus WD40 repeat protein [General function pr	99.82
KOG1188	376	consensus WD40 repeat protein [General function pr	99.81
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.81
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.81
KOG0649	325	consensus WD40 repeat protein [General function pr	99.81
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.8
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.8
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.8
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.79
KOG1310	758	consensus WD40 repeat protein [General function pr	99.79
KOG4227	609	consensus WD40 repeat protein [General function pr	99.79
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.78
KOG1334	559	consensus WD40 repeat protein [General function pr	99.77
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.77
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.76
PRK11028	330	6-phosphogluconolactonase; Provisional	99.76
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.76
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.76
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.76
KOG1334	559	consensus WD40 repeat protein [General function pr	99.75
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.75
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.74
KOG4547	541	consensus WD40 repeat-containing protein [General	99.74
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.74
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.73
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.73
PRK11028	330	6-phosphogluconolactonase; Provisional	99.71
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.71
KOG0649	325	consensus WD40 repeat protein [General function pr	99.71
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.7
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.7
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.7
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.7
PRK01742	429	tolB translocation protein TolB; Provisional	99.69
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.69
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.69
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.68
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.68
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.68
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.68
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.66
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.65
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.65
KOG2315	566	consensus Predicted translation initiation factor	99.64
PRK01742	429	tolB translocation protein TolB; Provisional	99.64
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.64
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.62
KOG2139	445	consensus WD40 repeat protein [General function pr	99.62
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.62
KOG2321	703	consensus WD40 repeat protein [General function pr	99.62
KOG2315	566	consensus Predicted translation initiation factor	99.61
KOG2321	703	consensus WD40 repeat protein [General function pr	99.59
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.58
PRK03629	429	tolB translocation protein TolB; Provisional	99.58
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.58
KOG1310	758	consensus WD40 repeat protein [General function pr	99.58
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.57
KOG2139	445	consensus WD40 repeat protein [General function pr	99.56
KOG2314	698	consensus Translation initiation factor 3, subunit	99.56
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.55
PRK02889	427	tolB translocation protein TolB; Provisional	99.54
PRK04922	433	tolB translocation protein TolB; Provisional	99.54
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.53
COG4946	668	Uncharacterized protein related to the periplasmic	99.51
PRK05137	435	tolB translocation protein TolB; Provisional	99.51
PRK05137	435	tolB translocation protein TolB; Provisional	99.5
PRK03629	429	tolB translocation protein TolB; Provisional	99.49
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.49
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.48
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.47
PRK04922	433	tolB translocation protein TolB; Provisional	99.47
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.47
PRK02889	427	tolB translocation protein TolB; Provisional	99.46
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.42
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.4
KOG4547	541	consensus WD40 repeat-containing protein [General	99.39
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.38
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.38
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.38
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.38
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.38
PF09384	148	UTP15_C: UTP15 C terminal; InterPro: IPR018983 Thi	99.36
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.35
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.35
COG4946	668	Uncharacterized protein related to the periplasmic	99.35
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.35
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.35
PRK04792	448	tolB translocation protein TolB; Provisional	99.35
PRK00178	430	tolB translocation protein TolB; Provisional	99.33
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.33
PRK01029	428	tolB translocation protein TolB; Provisional	99.32
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.31
PRK01029	428	tolB translocation protein TolB; Provisional	99.31
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.3
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.29
PRK00178	430	tolB translocation protein TolB; Provisional	99.27
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.25
PRK04792	448	tolB translocation protein TolB; Provisional	99.21
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.2
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.19
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.19
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.18
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.17
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.16
KOG2314	698	consensus Translation initiation factor 3, subunit	99.15
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.12
PF04003	110	Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A la	99.11
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.06
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.06
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.04
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.03
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.02
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.94
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.93
PRK04043	419	tolB translocation protein TolB; Provisional	98.93
PRK04043	419	tolB translocation protein TolB; Provisional	98.92
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.91
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.9
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.89
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.88
KOG2695	425	consensus WD40 repeat protein [General function pr	98.86
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.86
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.86
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.86
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.84
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.81
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.76
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.75
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.74
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.74
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.73
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.71
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.69
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.69
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.67
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.67
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.67
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.66
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.65
KOG2695	425	consensus WD40 repeat protein [General function pr	98.64
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.64
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.62
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.58
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.52
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.5
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.48
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.45
PRK02888	635	nitrous-oxide reductase; Validated	98.45
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.43
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.42
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.41
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.41
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.37
PRK02888	635	nitrous-oxide reductase; Validated	98.36
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.31
KOG3621	726	consensus WD40 repeat-containing protein [General	98.27
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.22
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.22
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.12
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.1
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.09
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.08
COG3391	381	Uncharacterized conserved protein [Function unknow	98.07
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.06
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.05
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.04
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.03
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.02
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.01
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.0
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.95
KOG3621	726	consensus WD40 repeat-containing protein [General	97.94
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.94
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.92
COG3391	381	Uncharacterized conserved protein [Function unknow	97.91
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.91
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.87
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.87
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.85
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.85
PF04192	237	Utp21: Utp21 specific WD40 associated putative dom	97.84
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.8
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.76
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.75
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.74
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.7
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.59
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.56
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.53
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.52
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.52
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.45
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.44
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.43
PRK13616	591	lipoprotein LpqB; Provisional	97.42
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.36
KOG2395	644	consensus Protein involved in vacuole import and d	97.34
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.31
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.29
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.29
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.22
PRK13616	591	lipoprotein LpqB; Provisional	97.15
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.11
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.1
PF14727	418	PHTB1_N: PTHB1 N-terminus	97.08
KOG2444	238	consensus WD40 repeat protein [General function pr	97.07
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.06
PHA02713	557	hypothetical protein; Provisional	97.04
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.0
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.97
PHA02713	557	hypothetical protein; Provisional	96.91
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.8
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.76
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.74
KOG2444	238	consensus WD40 repeat protein [General function pr	96.72
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.69
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.64
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.61
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.5
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	96.45
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.4
KOG2395	644	consensus Protein involved in vacuole import and d	96.23
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.22
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.19
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.17
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.16
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.99
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.81
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.78
PHA03098	534	kelch-like protein; Provisional	95.74
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.73
COG5276	370	Uncharacterized conserved protein [Function unknow	95.66
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.6
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.56
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	95.46
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.43
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.33
PHA03098	534	kelch-like protein; Provisional	95.13
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.13
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.09
PHA02790	480	Kelch-like protein; Provisional	94.83
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.79
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.44
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.43
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.42
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.4
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	94.39
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.24
PHA02790	480	Kelch-like protein; Provisional	94.13
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.04
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	93.87
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.73
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.45
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.43
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.38
KOG3616	1636	consensus Selective LIM binding factor [Transcript	93.3
COG5167	776	VID27 Protein involved in vacuole import and degra	93.3
KOG2247	615	consensus WD40 repeat-containing protein [General	93.23
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.2
PRK13684	334	Ycf48-like protein; Provisional	92.74
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.72
PRK10115	686	protease 2; Provisional	92.41
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.22
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.94
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	91.91
COG5167	776	VID27 Protein involved in vacuole import and degra	91.85
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.76
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.58
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.54
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.51
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.3
KOG3616	1636	consensus Selective LIM binding factor [Transcript	91.06
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	91.06
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.95
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	90.95
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	90.84
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	90.56
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	90.29
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	90.19
PRK13684	334	Ycf48-like protein; Provisional	90.09
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	90.05
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	89.94
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.48
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.43
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	88.99
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	88.94
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	88.76
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.16
KOG2377	657	consensus Uncharacterized conserved protein [Funct	87.97
KOG2247	615	consensus WD40 repeat-containing protein [General	87.91
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	87.45
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	87.28
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	86.8
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.76
COG5276	370	Uncharacterized conserved protein [Function unknow	86.14
KOG3380	152	consensus Actin-related protein Arp2/3 complex, su	85.78
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	85.63
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	85.32
PF12768	281	Rax2: Cortical protein marker for cell polarity	85.04
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	84.41
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	84.4
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	84.03
COG4590	733	ABC-type uncharacterized transport system, permeas	83.96
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	83.87
COG3292	671	Predicted periplasmic ligand-binding sensor domain	83.51
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	83.39
COG4590	733	ABC-type uncharacterized transport system, permeas	82.92
TIGR01063	800	gyrA DNA gyrase, A subunit. This model describes t	82.62
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	82.38
PLN02193	470	nitrile-specifier protein	82.37
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	81.9
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	81.87
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	81.7
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	81.6
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	81.25
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	81.25
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	80.81
PLN02153	341	epithiospecifier protein	80.52
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	80.46
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	80.31
PRK05560	805	DNA gyrase subunit A; Validated	80.11

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.1e-99  Score=750.80  Aligned_cols=651  Identities=46%  Similarity=0.770  Sum_probs=600.6

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe-eEEEecCccceeEEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK-CVATLDKHFSRVTSM   80 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~-~~~~l~~h~~~V~~l   80 (768)
                      ++|+||.||.|+|||+..+.++|.|+||.+.|.++.|+|+-.+.+|++|..|++|++||+.+.. ++.++..|.+.|+++
T Consensus       119 LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL  198 (775)
T KOG0319|consen  119 LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSL  198 (775)
T ss_pred             eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeee
Confidence            6899999999999999999999999999999999999999999999999999999999998554 588999999999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCc
Q 004214           81 AITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG  160 (768)
Q Consensus        81 ~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  160 (768)
                      +|++|+..++++|+|..+.+||+.+.+...+.|.++.++++.+.+.+.                  +..+.+++++|++|
T Consensus       199 ~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~------------------~~~~~~~~TaG~~g  260 (775)
T KOG0319|consen  199 AFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREEL------------------GGKGEYIITAGGSG  260 (775)
T ss_pred             eeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhc------------------CCcceEEEEecCCc
Confidence            999999999999999999999999999999999999999999888721                  11144999999999


Q ss_pred             EEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCC
Q 004214          161 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE  240 (768)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (768)
                      .+++||.+++..........         ...+......+....+++++.++++.+|+..       ++.+.+.+.|+++
T Consensus       261 ~~~~~d~es~~~~~~~~~~~---------~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~-------~l~i~k~ivG~nd  324 (775)
T KOG0319|consen  261 VVQYWDSESGKCVYKQRQSD---------SEEIDHLLAIESMSQLLLVTAEQNLFLYDED-------ELTIVKQIVGYND  324 (775)
T ss_pred             eEEEEecccchhhhhhccCC---------chhhhcceeccccCceEEEEccceEEEEEcc-------ccEEehhhcCCch
Confidence            99999999994443322211         1236777788899999999999999999765       5678889999999


Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc---
Q 004214          241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---  317 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---  317 (768)
                      +|.+|+|.+++.++++++++.+.+++|+..+..+. .+.+|...|.+++  .+..+ .+|++|++|.++++|.++.+   
T Consensus       325 EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~--~~~~g-~llat~sKD~svilWr~~~~~~~  400 (775)
T KOG0319|consen  325 EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLD--VWSSG-DLLATGSKDKSVILWRLNNNCSK  400 (775)
T ss_pred             hheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeee--ecccC-cEEEEecCCceEEEEEecCCcch
Confidence            99999999999999999999999999999998887 9999999999997  56666 46999999999999977443   


Q ss_pred             -eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214          318 -CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC  396 (768)
Q Consensus       318 -~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  396 (768)
                       .++....+|++.|.+++++..+..+|+++|.|+++++|+++...... .+.......+...|.+.|++++++|+.+++|
T Consensus       401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~-~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiA  479 (775)
T KOG0319|consen  401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA-FPIVLTCRYTERAHDKDINCVAIAPNDKLIA  479 (775)
T ss_pred             hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc-ccceehhhHHHHhhcccccceEecCCCceEE
Confidence             34566789999999999999999999999999999999998733222 2444555566788999999999999999999


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC
Q 004214          397 TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG  476 (768)
Q Consensus       397 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  476 (768)
                      +|+.|++.+||+++.+....++.||..+|+|+.|+|.++.++|+|.|++|+||.+.++.|+++|+||...|..+.|..+|
T Consensus       480 T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~  559 (775)
T KOG0319|consen  480 TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNG  559 (775)
T ss_pred             ecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHHHhhh
Q 004214          477 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQ  556 (768)
Q Consensus       477 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~  556 (768)
                      ++|++++.||.|++|++++++|+.++++|.+.||+++.+|.+.+++||+.||.|.+|...|.+...++.++++++++++|
T Consensus       560 ~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~~~~ee~~K~~eaieq~Q  639 (775)
T KOG0319|consen  560 KQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEEEQNEEQEKREEAIEQEQ  639 (775)
T ss_pred             cEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccchHHHHHHHhhcCCchhHHHHHHHHHhchhhHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCchHHHHHHH
Q 004214          557 ELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVL  636 (768)
Q Consensus       557 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~~~~~~~~l  636 (768)
                      ++++++.+++|.+|+.+|+.+.+|+..|.++...++++. +.++++++.+|+.++.+.||+|+.+|+||+|++.++|++|
T Consensus       640 eL~n~l~~~~~~~A~~LA~tLd~P~~~f~vi~~~~r~r~-~e~l~~av~~L~~dq~~~Ll~~~~~WnTnsk~c~vaQ~vL  718 (775)
T KOG0319|consen  640 ELENLLSQKRYTKAFVLALTLDKPHLVFTVINALYRERD-PEELGQAVFRLNEDQPEALLQFVVKWNTNSKTCHVAQRVL  718 (775)
T ss_pred             HHHHHHhhhhhHHHHHhHhhccCchhHHHHHHHHHhcCC-cHHHHHHHHHhhhhhHHHHHHHHHHhcCCcchhHHHHHHH
Confidence            999999999999999999999999999999999988776 5689999999999999999999999999999999999999


Q ss_pred             HHHhccCCcchhhcccChHhHHHhhccchHhHHHHHHHhHhhhhhhheecccccCC
Q 004214          637 FQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVI  692 (768)
Q Consensus       637 ~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~  692 (768)
                      +.+|+.+.++++.+.|++.++++.|+||++|||+|++++.+..++|||++.+|+..
T Consensus       719 ~~~l~~~~p~el~~~~g~~~~~e~l~PYtqRHf~Rid~~~~~~~lLdf~~~eM~~~  774 (775)
T KOG0319|consen  719 YEILKRVDPEELVRWPGSGEVVEALLPYTQRHFRRIDRLVQDSALLDFTWFEMRIS  774 (775)
T ss_pred             HHHHhccChHHhhcccchHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHhhhheecC
Confidence            99999999999999999999999999999999999999999999999999999753

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.8e-69  Score=535.82  Aligned_cols=678  Identities=22%  Similarity=0.356  Sum_probs=505.8

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA   81 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~   81 (768)
                      +||+|.+||.|+||+..++....+|.||..+|+++.|...|.+  |+|||.|+.|.+||+....-+..++||...|+.+-
T Consensus        79 ~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~r--laSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~  156 (888)
T KOG0306|consen   79 LLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTR--LASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQAL  156 (888)
T ss_pred             eEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCce--EeecCCCccEEEEEeccceeeEEeecchHHHhHHh
Confidence            5899999999999999999999999999999999999999998  99999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc-eeEeeEEecCCC--------CCccccc------------------
Q 004214           82 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPG--------SAFDSFL------------------  134 (768)
Q Consensus        82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~-~~v~~~~~~~~~--------~~~~~~~------------------  134 (768)
                      |..+.++|+++|.|+.|++||+++..|..+.-.+ ..+.++++.+.-        ......+                  
T Consensus       157 F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~  236 (888)
T KOG0306|consen  157 FLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLR  236 (888)
T ss_pred             ccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeecc
Confidence            9998999999999999999999999999887654 447777776620        0000000                  


Q ss_pred             cccchh----hhhcccCCcceEEEEeeCCcEEEEEEcCCce-e---eee-----cCCce------e---------ecccc
Q 004214          135 SSYNQQ----TIKKKRRSLEIHFITVGERGIVRMWNADSAC-L---YEQ-----KSSDV------T---------ISFEM  186 (768)
Q Consensus       135 ~~~~~~----~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~-~---~~~-----~~~~~------~---------~~~~~  186 (768)
                      +...++    ...........++++-+.|..+.++.+.+.. +   ...     +....      .         .....
T Consensus       237 G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~  316 (888)
T KOG0306|consen  237 GTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLET  316 (888)
T ss_pred             ceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHh
Confidence            000000    0011111223334444444444444443330 0   000     00000      0         00000


Q ss_pred             cCcccceeEEEEccCCCc--eEEEEecCeEEEEeeccCcc--cceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214          187 DDSKRGFTAATVLPSNQG--LLCVTADQQLLLYTTVEVPE--KKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE  262 (768)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~--l~~~~~dg~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~  262 (768)
                      ......+..+.+.|.+..  .+....++.+.+|.+.....  +...........||...|.+++++.  ++.++..+..+
T Consensus       317 ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~--d~~~~~Sga~~  394 (888)
T KOG0306|consen  317 IRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS--DSILLASGAGE  394 (888)
T ss_pred             eechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec--CceeeeecCCC
Confidence            111123344455554433  35557889999998876221  2334445567889999999999984  33555555569


Q ss_pred             cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcE
Q 004214          263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF  342 (768)
Q Consensus       263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  342 (768)
                      .+.+|+..+.++++++...  .+.|..  +.|.+.+ +++|...|.+.+||+.+...+....+|.+.|++++.+|++. .
T Consensus       395 SikiWn~~t~kciRTi~~~--y~l~~~--Fvpgd~~-Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~-g  468 (888)
T KOG0306|consen  395 SIKIWNRDTLKCIRTITCG--YILASK--FVPGDRY-IVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNK-G  468 (888)
T ss_pred             cEEEEEccCcceeEEeccc--cEEEEE--ecCCCce-EEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCC-c
Confidence            9999999999999998765  455543  6666665 99999999999999999999999999999999999999977 6


Q ss_pred             EEEEeCCCeEEEEeCCCCCCCCccc---cccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 004214          343 LVSGSSDHTIKVWSFDGLSDDAEQP---MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR  419 (768)
Q Consensus       343 l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  419 (768)
                      +++||.|.+|++||+......+...   ...+.. ....-...|.|+.+||||++||++--|.++++|-+++.+...++.
T Consensus       469 ~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~-rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY  547 (888)
T KOG0306|consen  469 FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT-RTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY  547 (888)
T ss_pred             eEEecCCcEEEEEeEEEEeccCcccceeeeeccc-eEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec
Confidence            9999999999999986443211110   111111 123346789999999999999999999999999999999999999


Q ss_pred             ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEE
Q 004214          420 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI  499 (768)
Q Consensus       420 ~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  499 (768)
                      ||.-||.|+.+|||+++++|||.|++|+||-++-|.|.+.+.+|...|+++.|.|....++++|.||.|+-||-...+++
T Consensus       548 GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~i  627 (888)
T KOG0306|consen  548 GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEI  627 (888)
T ss_pred             ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH----HHHHHHHHHHH--HHhh------------------
Q 004214          500 ATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE----REEAFRKEEEA--VLRG------------------  555 (768)
Q Consensus       500 ~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~----~~~~~~~~~~~--~~~~------------------  555 (768)
                      +++.+|...|++++.+|+|.+++++|.|..|++|+...+..    .++.+++++.+  +..+                  
T Consensus       628 q~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lEeekE~ErEe~yE~l~~~~e~~~~~~~~~g~~~~~sk  707 (888)
T KOG0306|consen  628 QKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILEEEKEGEREEEYETLLASEEVVAGDGSADGDAGVASK  707 (888)
T ss_pred             eeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcceeeehhhhhhhHHHHHHhhhhcccccCCCcccccccchhh
Confidence            99999999999999999999999999999999999877322    22211111111  0000                  


Q ss_pred             hHHHHhhcccchHHHHHHHhh---------cCCch-hHHHHHH--------HHHhchhhHHHHHHHHhhcCHHHHHHHHH
Q 004214          556 QELENAVLDADYTKAIQVAFE---------LRRPH-KLFELFA--------SVCRKREAELQIEKALHALGKEEIRQLLE  617 (768)
Q Consensus       556 ~~~~~~~~~~~~~~a~~~~~~---------~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~ll~  617 (768)
                      +.++......+..+|++++.+         +..|. .++..+.        .. -.+.+..+++.++.-||++++..+|+
T Consensus       708 kTieSvk~aE~i~ea~di~~~e~~~~ee~~~g~P~npll~a~~ks~e~yi~dt-l~~Ir~S~Ld~aLlllPfS~V~~vl~  786 (888)
T KOG0306|consen  708 KTIESVKSAERILEALDIGREELTQLEEYSPGHPHNPLLNAYNKSPEKYIVDT-LMKIRASELDDALLLLPFSYVLDVLK  786 (888)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCCcHHHHHhcCCHHHHHHHH-HHhcchhhhhhhheeccHHHHHHHHH
Confidence            111122222223334332221         11222 1111111        11 12234568999999999999999999


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHhccCCcchhhcccChHhHHHhhccchHhHHHHHHHhHhhhhhhheecccccCCCcchh
Q 004214          618 YVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTE  697 (768)
Q Consensus       618 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~  697 (768)
                      ++..|+.++...+++.+++..|+++| ...+...+++.+.|+.+...+.+-.      -|+.+.+.+|++.+++.+..-+
T Consensus       787 ~i~~~~q~~~~veLv~rv~~fL~rih-~~~it~~~~~kp~l~~i~s~l~~~v------~q~rdv~G~NlagL~~l~~E~e  859 (888)
T KOG0306|consen  787 FIDECIQRKSKVELVCRVLFFLLRIH-HKQITAHKNMKPLLEKIKSKLREIV------EQLRDVLGFNLAGLSLLKQEWE  859 (888)
T ss_pred             HHHHHHcCCCcceeEeeeeeehhhhh-hhhhccccchHHHHHHHHHHHHHHH------HHhhhhhhhhhhHHHHHHHhhh
Confidence            99999999999999999999999999 6688889999999999988888544      4566666999999998764333


Q ss_pred             h
Q 004214          698 A  698 (768)
Q Consensus       698 ~  698 (768)
                      +
T Consensus       860 ~  860 (888)
T KOG0306|consen  860 D  860 (888)
T ss_pred             c
Confidence            3

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.5e-62  Score=491.55  Aligned_cols=636  Identities=21%  Similarity=0.328  Sum_probs=504.7

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC--------eeEEEecCc
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK--------KCVATLDKH   73 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~--------~~~~~l~~h   73 (768)
                      ++++....|...+-+......+|.+. .+.+|.|+.|||||++  +|.|. ...+.||.....        ...+++.+|
T Consensus        69 lllavdE~g~~~lvs~~~r~Vlh~f~-fk~~v~~i~fSPng~~--fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~  144 (893)
T KOG0291|consen   69 LLLAVDERGRALLVSLLSRSVLHRFN-FKRGVGAIKFSPNGKF--FAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGH  144 (893)
T ss_pred             EEEEEcCCCcEEEEecccceeeEEEe-ecCccceEEECCCCcE--EEEEe-cceeEEEecCcchhcccCcceEeeeecCC
Confidence            34455566666777776666667665 6789999999999986  55543 567999987432        234667889


Q ss_pred             cceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeee--ecc-eeEeeEEecCCCCCccccccccchhhhhcccCCcc
Q 004214           74 FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV--PTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE  150 (768)
Q Consensus        74 ~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~--~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (768)
                      ...|+++.|+.|.++|++++.|..+++|++...+.....  ..+ ..+.+..|..+..                      
T Consensus       145 fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~----------------------  202 (893)
T KOG0291|consen  145 FDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSL----------------------  202 (893)
T ss_pred             ccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcc----------------------
Confidence            999999999999999999999999999999887764433  233 3455555554433                      


Q ss_pred             eEEEEeeCCcEEEEEEcCCceeeeecC----------------Cc--------eeecccccCcccceeEEEEccCCCceE
Q 004214          151 IHFITVGERGIVRMWNADSACLYEQKS----------------SD--------VTISFEMDDSKRGFTAATVLPSNQGLL  206 (768)
Q Consensus       151 ~~~~~~~~~g~i~iwd~~~~~~~~~~~----------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~  206 (768)
                       .+++.+.||.+.+|............                .+        .....-.......++++.|++....++
T Consensus       203 -~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lv  281 (893)
T KOG0291|consen  203 -DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLV  281 (893)
T ss_pred             -eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEE
Confidence             79999999999999887331100000                00        000111122235678888999999999


Q ss_pred             EEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC-CCcEEEEECCCceeeeeeeCCccce
Q 004214          207 CVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN-IEQVQVYDLSSMSCSYVLAGHSEIV  285 (768)
Q Consensus       207 ~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~v  285 (768)
                      ++-..|.+.+|.++.       ..+...+.-...+|..+.|+. .+.++|.|+. -|++.||+.++...+...++|...+
T Consensus       282 vgFssG~f~LyelP~-------f~lih~LSis~~~I~t~~~N~-tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i  353 (893)
T KOG0291|consen  282 VGFSSGEFGLYELPD-------FNLIHSLSISDQKILTVSFNS-TGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRI  353 (893)
T ss_pred             EEecCCeeEEEecCC-------ceEEEEeecccceeeEEEecc-cCCEEEEcCCccceEEEEEeeccceeeeccccccce
Confidence            999999999999874       445556666677899999974 6778888776 4899999999999999999999999


Q ss_pred             EEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCc
Q 004214          286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE  365 (768)
Q Consensus       286 ~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  365 (768)
                      .|++  ++|++.. +++|+.||.|++||..++-|..++..|+..|+.+.|+..+. .+++.+-||+|+.||+.....   
T Consensus       354 ~~l~--YSpDgq~-iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrN---  426 (893)
T KOG0291|consen  354 TSLA--YSPDGQL-IATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRN---  426 (893)
T ss_pred             eeEE--ECCCCcE-EEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccce---
Confidence            9998  7777765 99999999999999999999999999999999999999966 799999999999999985432   


Q ss_pred             cccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC-cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCC
Q 004214          366 QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK  444 (768)
Q Consensus       366 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~  444 (768)
                            .............|++..|.|.++++|+.|. .|.+|++++|+.+-.+.||++||.+++|+|++..|++++.|.
T Consensus       427 ------fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk  500 (893)
T KOG0291|consen  427 ------FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK  500 (893)
T ss_pred             ------eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence                  1111222344568999999999999999887 599999999999999999999999999999999999999999


Q ss_pred             cEEEEeCCCC-ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc-------------------
Q 004214          445 TIKIWSISDG-SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK-------------------  504 (768)
Q Consensus       445 ~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------------  504 (768)
                      +||+||+-.. ..+.++. +...++.++|+|+|+.|+++..||.|.+||+..+..+.++++                   
T Consensus       501 TVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~s  579 (893)
T KOG0291|consen  501 TVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENS  579 (893)
T ss_pred             eEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhc
Confidence            9999998654 3445555 788899999999999999999999999999988766655432                   


Q ss_pred             -CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHHHH--------------HH--------------HHH----HHH
Q 004214          505 -HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREE--------------AF--------------RKE----EEA  551 (768)
Q Consensus       505 -~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~--------------~~--------------~~~----~~~  551 (768)
                       .....+.+++|+||.++++||....|++|++.++...+.              ..              ..+    +..
T Consensus       580 a~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~  659 (893)
T KOG0291|consen  580 AKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGR  659 (893)
T ss_pred             ccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCcccccccccccccc
Confidence             224578999999999999999999999999887654311              00              000    000


Q ss_pred             H--------------------------------------------------------------HhhhHHHHhhcccchHH
Q 004214          552 V--------------------------------------------------------------LRGQELENAVLDADYTK  569 (768)
Q Consensus       552 ~--------------------------------------------------------------~~~~~~~~~~~~~~~~~  569 (768)
                      +                                                              .........+...+|.+
T Consensus       660 i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~IYsld~~~~FDPf~LD~~vTPe~v~~al~~qey~~  739 (893)
T KOG0291|consen  660 IDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIYSLDTTILFDPFDLDVDVTPESVREALREQEYLK  739 (893)
T ss_pred             ccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccceEEEecCCceEEcccccccccCHHHHHHHHhcchHHH
Confidence            0                                                              00123557788889999


Q ss_pred             HHHHHhhcCCchhHHHHHHHHHhchhhHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhccCCcchhh
Q 004214          570 AIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEII  649 (768)
Q Consensus       570 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  649 (768)
                      |+.+++++|.+..+.+++++++..     .++.+...||..++++||++|.+.+.+++|.++++.|+++||..||.....
T Consensus       740 AlvmslRLNe~~lI~evlesvp~~-----~Ie~V~~~Lp~~y~erll~~l~~~l~~s~HieF~l~W~~~il~~hG~~~~~  814 (893)
T KOG0291|consen  740 ALVMSLRLNEYKLIKEVLESVPIK-----DIELVASSLPTAYLERLLKALSRFLENSPHIEFYLRWLRAILTYHGSSLKR  814 (893)
T ss_pred             HHHHHHhcCHHHHHHHHHHhCChh-----hhhhhhhcCcHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhhc
Confidence            999999999998888888888665     799999999999999999999999999999999999999999999986556


Q ss_pred             cccChHhHHHhhccchHhHHHHHHHhHh-hhhhhheecccccC
Q 004214          650 EIKGISDVLEGLIPYTQRHFSRIDRLVR-STFLLDYTLTGMSV  691 (768)
Q Consensus       650 ~~~~~~~~l~~l~~~~~~~~~~~~~l~~-~~~~l~~~~~~~~~  691 (768)
                      ....+.++|.+|++.+.||.+.+.+|+. .++.|.|++..++.
T Consensus       815 ~~~~~~~~~~~lqk~i~r~~~~l~kl~~~Nky~L~~lv~~~~~  857 (893)
T KOG0291|consen  815 RAETLLPALTSLQKSIVRHIDDLSKLCSLNKYTLRYLVSKRQS  857 (893)
T ss_pred             cceehhhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhhhh
Confidence            6667888999999999999999999994 34445555444433

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-54  Score=434.30  Aligned_cols=488  Identities=21%  Similarity=0.353  Sum_probs=408.3

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEc-CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKG-HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM   80 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~g-h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l   80 (768)
                      +|++++....+++|++++|++++..+. |+++|.-|+|+|.|..  +++|+.||.|+|||+..+.+.+.|+||.+.|.++
T Consensus        76 ~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~L--lAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl  153 (775)
T KOG0319|consen   76 VLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTL--LATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSL  153 (775)
T ss_pred             EEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCce--EEeccccceEEEEEeeCCEEEEEecCCCceEEEE
Confidence            688899999999999999999999998 9999999999998854  9999999999999999999999999999999999


Q ss_pred             EEcCCCCE--EEEEeCCCeEEEEECCCCee-eeee-ecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEe
Q 004214           81 AITSDGST--LISAGRDKVVNLWDLRDYSC-KLTV-PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITV  156 (768)
Q Consensus        81 ~fs~d~~~--L~s~~~dg~i~vWd~~~~~~-~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (768)
                      .|.|+-.+  |++++.|+++++||+.+... +.+. .+...+.++.+.+++.                       .++++
T Consensus       154 ~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~-----------------------~~ls~  210 (775)
T KOG0319|consen  154 LFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL-----------------------ELLSV  210 (775)
T ss_pred             EeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc-----------------------eEEEe
Confidence            99997654  88999999999999996554 4444 3456689999999865                       78999


Q ss_pred             eCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccC-----CCceEEEEecCeEEEEeeccCcccceeeEE
Q 004214          157 GERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPS-----NQGLLCVTADQQLLLYTTVEVPEKKMELIL  231 (768)
Q Consensus       157 ~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~  231 (768)
                      |.|..+.+||+..-+.......           ...+-.+.+.+.     +..+++++.+|.++.|+...........  
T Consensus       211 ~RDkvi~vwd~~~~~~l~~lp~-----------ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~--  277 (775)
T KOG0319|consen  211 GRDKVIIVWDLVQYKKLKTLPL-----------YESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQR--  277 (775)
T ss_pred             ccCcEEEEeehhhhhhhheech-----------hhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhc--
Confidence            9999999999955422111110           122333334444     5678999999999999987654211111  


Q ss_pred             EeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEE
Q 004214          232 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL  311 (768)
Q Consensus       232 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~i  311 (768)
                         .. ...++..+...+ ....++..+.+..+.+||..+.+....+.|..+.|..+.  +..+....++.+++.+.+++
T Consensus       278 ---~~-~~~e~~~~~~~~-~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~--~lG~e~~~laVATNs~~lr~  350 (775)
T KOG0319|consen  278 ---QS-DSEEIDHLLAIE-SMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMK--FLGPEESHLAVATNSPELRL  350 (775)
T ss_pred             ---cC-Cchhhhcceecc-ccCceEEEEccceEEEEEccccEEehhhcCCchhheeee--ecCCccceEEEEeCCCceEE
Confidence               11 023355666654 344566666779999999999999999999999999987  77777677999999999999


Q ss_pred             EeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214          312 WDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN  391 (768)
Q Consensus       312 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  391 (768)
                      |+..+..+. .+.+|+..|.++....+| .+|++|+.|.++++|.++....      ...+.....+|...|.+++++..
T Consensus       351 y~~~~~~c~-ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~------~~~~~a~~~gH~~svgava~~~~  422 (775)
T KOG0319|consen  351 YTLPTSYCQ-IIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCS------KSLCVAQANGHTNSVGAVAGSKL  422 (775)
T ss_pred             EecCCCceE-EEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcc------hhhhhhhhcccccccceeeeccc
Confidence            999887766 789999999999966665 4899999999999999843321      33345556789999999999874


Q ss_pred             -CCEEEEEeCCCcEEEEeCCCCce---EE------EEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee
Q 004214          392 -DSLVCTGSQDRTACVWRLPDLVS---VV------TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE  461 (768)
Q Consensus       392 -~~~l~~~~~dg~i~i~d~~~~~~---~~------~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~  461 (768)
                       ..+|++++.|+++++|+++..+.   ..      +...|...|+|++++|+..++||||.|++.+||++..+..+.++.
T Consensus       423 ~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs  502 (775)
T KOG0319|consen  423 GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS  502 (775)
T ss_pred             CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee
Confidence             46899999999999999976221   11      234699999999999999999999999999999999999999999


Q ss_pred             cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHH
Q 004214          462 GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER  541 (768)
Q Consensus       462 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~  541 (768)
                      ||...|.++.|+|..+.++|+|.|++|+||.+.++.|++++.+|...|....|-.+|..|++++.||.+++|++++.+..
T Consensus       503 GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~  582 (775)
T KOG0319|consen  503 GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE  582 (775)
T ss_pred             CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998875


Q ss_pred             H
Q 004214          542 E  542 (768)
Q Consensus       542 ~  542 (768)
                      .
T Consensus       583 ~  583 (775)
T KOG0319|consen  583 M  583 (775)
T ss_pred             h
Confidence            4

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.4e-56  Score=410.95  Aligned_cols=369  Identities=27%  Similarity=0.438  Sum_probs=316.4

Q ss_pred             EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEE
Q 004214           21 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL  100 (768)
Q Consensus        21 ~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~v  100 (768)
                      +|...+.||.++|-|++|+|+|.+  |++|+.|.++++||+.+..++++.++|...|.|++|+|||+.||||+.||.|++
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~--l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l  183 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSR--LVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL  183 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCce--EEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence            456688899999999999999998  999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCce
Q 004214          101 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV  180 (768)
Q Consensus       101 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~  180 (768)
                      ||.++|+++                                                                       
T Consensus       184 wdpktg~~~-----------------------------------------------------------------------  192 (480)
T KOG0271|consen  184 WDPKTGQQI-----------------------------------------------------------------------  192 (480)
T ss_pred             ecCCCCCcc-----------------------------------------------------------------------
Confidence            998877532                                                                       


Q ss_pred             eecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec----CCCCEEE
Q 004214          181 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG----EEEQYLA  256 (768)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~  256 (768)
                                                                         .+.+.+|...|++++|-|    +...+||
T Consensus       193 ---------------------------------------------------g~~l~gH~K~It~Lawep~hl~p~~r~la  221 (480)
T KOG0271|consen  193 ---------------------------------------------------GRALRGHKKWITALAWEPLHLVPPCRRLA  221 (480)
T ss_pred             ---------------------------------------------------cccccCcccceeEEeecccccCCCcccee
Confidence                                                               134556777788888854    5667999


Q ss_pred             EEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEe
Q 004214          257 VATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS  336 (768)
Q Consensus       257 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  336 (768)
                      +++.||.++|||+..+.++..+.+|+.+|+|+.   +. |..++++|+.|++|++|+...|.+.+.+++|...|..++.+
T Consensus       222 s~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvr---wG-G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lals  297 (480)
T KOG0271|consen  222 SSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVR---WG-GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALS  297 (480)
T ss_pred             cccCCCCEEEEEccCceEEEEeccCccceEEEE---Ec-CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeecc
Confidence            999999999999999999999999999999996   23 33469999999999999999999999999999999999998


Q ss_pred             cCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CceE
Q 004214          337 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD-LVSV  415 (768)
Q Consensus       337 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~  415 (768)
                      .+.  .|-+|..|.+=+-.....       ....+....+        ....-..+..+++|+.|.++.+|+... .+++
T Consensus       298 Tdy--~LRtgaf~~t~~~~~~~s-------e~~~~Al~rY--------~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi  360 (480)
T KOG0271|consen  298 TDY--VLRTGAFDHTGRKPKSFS-------EEQKKALERY--------EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI  360 (480)
T ss_pred             chh--hhhccccccccccCCChH-------HHHHHHHHHH--------HHhhccCcceeEEecCCceEEEecccccccch
Confidence            762  355554443211111000       0000000000        001112457899999999999999754 4588


Q ss_pred             EEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214          416 VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       416 ~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  495 (768)
                      ..+.+|..-|+.+.||||++++|+++-|+.|++||.++|+.+.+|+||-.+|..++|+.|.++|++|+.|.++++|++++
T Consensus       361 ~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t  440 (480)
T KOG0271|consen  361 TRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT  440 (480)
T ss_pred             hhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214          496 GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  534 (768)
Q Consensus       496 ~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~  534 (768)
                      .+....+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus       441 kKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  441 KKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             eeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.4e-50  Score=371.22  Aligned_cols=345  Identities=24%  Similarity=0.385  Sum_probs=289.8

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeE-EEecCccceeEEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV-ATLDKHFSRVTSM   80 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~-~~l~~h~~~V~~l   80 (768)
                      .||+|+-|.++++||+.+....++.+||...|.|++|+|||+.  ||+|+.||+|++||..+|+++ ..|.+|...|+++
T Consensus       129 ~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~--iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~L  206 (480)
T KOG0271|consen  129 RLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKK--IASGSKDGSIRLWDPKTGQQIGRALRGHKKWITAL  206 (480)
T ss_pred             eEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcch--hhccccCCeEEEecCCCCCcccccccCcccceeEE
Confidence            6899999999999999999999999999999999999999999  999999999999999999876 6789999999999


Q ss_pred             EEcC-----CCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEE
Q 004214           81 AITS-----DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT  155 (768)
Q Consensus        81 ~fs~-----d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (768)
                      +|-|     ..++|++++.||.|+|||+..+.++..                                            
T Consensus       207 awep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~--------------------------------------------  242 (480)
T KOG0271|consen  207 AWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT--------------------------------------------  242 (480)
T ss_pred             eecccccCCCccceecccCCCCEEEEEccCceEEEE--------------------------------------------
Confidence            9965     678999999999999999977654433                                            


Q ss_pred             eeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeee
Q 004214          156 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL  235 (768)
Q Consensus       156 ~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~  235 (768)
                                                                                                     +
T Consensus       243 -------------------------------------------------------------------------------l  243 (480)
T KOG0271|consen  243 -------------------------------------------------------------------------------L  243 (480)
T ss_pred             -------------------------------------------------------------------------------e
Confidence                                                                                           3


Q ss_pred             cccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214          236 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE  315 (768)
Q Consensus       236 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~  315 (768)
                      .||..+|+|++|-  .+.++++++.|++|++|+...|.+.+.+.+|...|+.++  .+.  .+.|-+|..|.+=+-....
T Consensus       244 sgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la--lsT--dy~LRtgaf~~t~~~~~~~  317 (480)
T KOG0271|consen  244 SGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA--LST--DYVLRTGAFDHTGRKPKSF  317 (480)
T ss_pred             ccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeee--ccc--hhhhhccccccccccCCCh
Confidence            4677788999985  456999999999999999999999999999999999986  222  2235555443221111100


Q ss_pred             CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE
Q 004214          316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV  395 (768)
Q Consensus       316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  395 (768)
                      + +...  ..-. .-  -+..+++...+++|+.|.++.+|+...         ..++.....+|..-|+.+.||||++++
T Consensus       318 s-e~~~--~Al~-rY--~~~~~~~~erlVSgsDd~tlflW~p~~---------~kkpi~rmtgHq~lVn~V~fSPd~r~I  382 (480)
T KOG0271|consen  318 S-EEQK--KALE-RY--EAVLKDSGERLVSGSDDFTLFLWNPFK---------SKKPITRMTGHQALVNHVSFSPDGRYI  382 (480)
T ss_pred             H-HHHH--HHHH-HH--HHhhccCcceeEEecCCceEEEecccc---------cccchhhhhchhhheeeEEECCCccEE
Confidence            0 0000  0000 00  011233345799999999999998653         333556678899999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeC
Q 004214          396 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR  475 (768)
Q Consensus       396 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  475 (768)
                      |+++.|+.|++|+.++|+.+.+|+||-.+|..++|+.|.++|++|+.|.++++|++++.+....+.||...|.++.|+||
T Consensus       383 ASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspD  462 (480)
T KOG0271|consen  383 ASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPD  462 (480)
T ss_pred             EEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEE
Q 004214          476 GAQIVSCGADGLVKLWT  492 (768)
Q Consensus       476 ~~~l~s~~~dg~i~iwd  492 (768)
                      |..+++|+.|..+++|.
T Consensus       463 G~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  463 GQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CceeecCCCceEEEeec
Confidence            99999999999999994

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3e-45  Score=353.16  Aligned_cols=492  Identities=18%  Similarity=0.279  Sum_probs=393.0

Q ss_pred             CEEEeecCCCcEEEEECCCCE--EEEEEEcCCCcEEEEEEeeCCCccEEEEE-eCCCcEEEEECCCCeeEEEecCcccee
Q 004214            1 MFALLEGADRKVLVWDVDGGF--CTHYFKGHKGVVSSILFHPDTDKSLLFSG-SDDATVRVWDLLAKKCVATLDKHFSRV   77 (768)
Q Consensus         1 ~~latg~~dg~i~vwd~~~~~--~~~~l~gh~~~V~~l~~spd~~~~~l~sg-~~dg~I~iWd~~~~~~~~~l~~h~~~V   77 (768)
                      .|+|+|...|+|+|||.....  +...++.-.++|..++|++|+++ ++|+| +.+...+++-+.+|..+..+.||...|
T Consensus        72 ~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~R-I~avGEGrerfg~~F~~DSG~SvGei~GhSr~i  150 (603)
T KOG0318|consen   72 FYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKR-IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRI  150 (603)
T ss_pred             eEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcE-EEEEecCccceeEEEEecCCCccceeeccceeE
Confidence            389999999999999996533  33467778999999999999987 33333 334444555555899999999999999


Q ss_pred             EEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeeeeecce-eEeeEEecCCCCCccccccccchhhhhcccCCcceEEEE
Q 004214           78 TSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT  155 (768)
Q Consensus        78 ~~l~fs~d~~-~L~s~~~dg~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (768)
                      .++.|-|... +++|++.|++|.+|+=.-.+...++..+. .+.++.++|+|+                       .|++
T Consensus       151 ns~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~-----------------------~Fat  207 (603)
T KOG0318|consen  151 NSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGS-----------------------RFAT  207 (603)
T ss_pred             eeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCC-----------------------eEEE
Confidence            9999999776 58999999999999988888777776554 589999999998                       8999


Q ss_pred             eeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeee
Q 004214          156 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL  235 (768)
Q Consensus       156 ~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~  235 (768)
                      +|.||.+.+||-.++........       ...+...+.++.++|++.++++++.|.++++|+.....-.. ++..... 
T Consensus       208 ~gsDgki~iyDGktge~vg~l~~-------~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~-t~~~~~~-  278 (603)
T KOG0318|consen  208 AGSDGKIYIYDGKTGEKVGELED-------SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS-TWPMGST-  278 (603)
T ss_pred             ecCCccEEEEcCCCccEEEEecC-------CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE-EeecCCc-
Confidence            99999999999999955443322       34567899999999999999999999999999998763111 1111111 


Q ss_pred             cccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214          236 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE  315 (768)
Q Consensus       236 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~  315 (768)
                        ..+.-..+.|-   ...|++-+-+|.|.+++...+.....+.+|...|+++.  ..+++.. |++|+.||.|.-|+..
T Consensus       279 --v~dqqvG~lWq---kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLt--v~~d~~~-i~SgsyDG~I~~W~~~  350 (603)
T KOG0318|consen  279 --VEDQQVGCLWQ---KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALT--VSPDGKT-IYSGSYDGHINSWDSG  350 (603)
T ss_pred             --hhceEEEEEEe---CCeEEEEEcCcEEEEecccCCChhheecccccceeEEE--EcCCCCE-EEeeccCceEEEEecC
Confidence              22344555553   55888888899999999999999999999999999998  7777755 9999999999999999


Q ss_pred             CceEEEee-ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcc--ccccc-------------------ee
Q 004214          316 SRCCVGVG-TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ--PMNLK-------------------AK  373 (768)
Q Consensus       316 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~-------------------~~  373 (768)
                      ++..-+.. .+|...|.+++.+..+.  +++.+.|.++++.++.........  .....                   ..
T Consensus       351 ~g~~~~~~g~~h~nqI~~~~~~~~~~--~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~i  428 (603)
T KOG0318|consen  351 SGTSDRLAGKGHTNQIKGMAASESGE--LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDI  428 (603)
T ss_pred             CccccccccccccceEEEEeecCCCc--EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcE
Confidence            88766554 78999999999988544  899999999999987544222111  00000                   01


Q ss_pred             eEee--------ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eEEEEeccCCCeEEEEEccCCCEEEEeeCC
Q 004214          374 AVVA--------AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV--SVVTFRGHKRGIWSVEFSPVDQVVITASGD  443 (768)
Q Consensus       374 ~~~~--------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d  443 (768)
                      ..+.        .-.-...+++++|++..+++|+.||.|++|.+....  ....+..|..+|++++||||+.+||++...
T Consensus       429 v~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~  508 (603)
T KOG0318|consen  429 VLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS  508 (603)
T ss_pred             EEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC
Confidence            1111        112345789999999999999999999999998654  344566799999999999999999999999


Q ss_pred             CcEEEEeCCCCceeEE-eecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe-EEEEeccCCCcEEEEEEcCCCCEE
Q 004214          444 KTIKIWSISDGSCLKT-FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-CIATYDKHEDKIWALAVGKKTEMF  521 (768)
Q Consensus       444 ~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~s~~~~~l  521 (768)
                      +.+.+||+.+.+.... +.-|...|.+++|+|+..++|+|+-|-.|.||+++... -+....+|...|+.+.|- +...+
T Consensus       509 rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tv  587 (603)
T KOG0318|consen  509 RKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTV  587 (603)
T ss_pred             CcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceE
Confidence            9999999998876433 33499999999999999999999999999999998754 344456799999999997 56689


Q ss_pred             EEEeCCCcEEEEEcC
Q 004214          522 ATGGSDALVNLWHDS  536 (768)
Q Consensus       522 ~s~~~dg~v~vw~~~  536 (768)
                      ++.|.|..|++|++.
T Consensus       588 vSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  588 VSSGQDANIKVWNVT  602 (603)
T ss_pred             EeccCcceeEEeccc
Confidence            999999999999864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.8e-45  Score=366.08  Aligned_cols=483  Identities=17%  Similarity=0.273  Sum_probs=401.2

Q ss_pred             cCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCC
Q 004214            7 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDG   86 (768)
Q Consensus         7 ~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~   86 (768)
                      ..++.|.|+|..+.+-....-.+...|++++.||+|..  +++....|...+-++.....++.+. ...+|.++.|||||
T Consensus        32 PvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~l--llavdE~g~~~lvs~~~r~Vlh~f~-fk~~v~~i~fSPng  108 (893)
T KOG0291|consen   32 PVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTL--LLAVDERGRALLVSLLSRSVLHRFN-FKRGVGAIKFSPNG  108 (893)
T ss_pred             ccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceE--EEEEcCCCcEEEEecccceeeEEEe-ecCccceEEECCCC
Confidence            45788999999887644444468999999999999987  8888999999999998888888877 56779999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCee--------eeee-ecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEee
Q 004214           87 STLISAGRDKVVNLWDLRDYSC--------KLTV-PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG  157 (768)
Q Consensus        87 ~~L~s~~~dg~i~vWd~~~~~~--------~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (768)
                      +++|.+.. +.+.||.......        ..++ .+...+.++.|+.+..                       .+++++
T Consensus       109 ~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr-----------------------~l~~gs  164 (893)
T KOG0291|consen  109 KFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR-----------------------LLVTGS  164 (893)
T ss_pred             cEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc-----------------------eEEecc
Confidence            98887764 6799998754322        1122 2334578888888775                       899999


Q ss_pred             CCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccc-----------
Q 004214          158 ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK-----------  226 (768)
Q Consensus       158 ~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~-----------  226 (768)
                      .|-..++|.++...-        ...+....+...+..+.|..+...+++++.||.+.+|.....|...           
T Consensus       165 rD~s~rl~~v~~~k~--------~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~  236 (893)
T KOG0291|consen  165 RDLSARLFGVDGNKN--------LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSD  236 (893)
T ss_pred             ccceEEEEEeccccc--------cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccc
Confidence            999999999876622        1223345566788888899999999999999999999887332110           


Q ss_pred             ---------------eeeEEEe-eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEee
Q 004214          227 ---------------MELILSK-RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDT  290 (768)
Q Consensus       227 ---------------~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~  290 (768)
                                     ......+ -+......+++.+|+ +....|++|-.+|...+|.+....++..+.-...+|..+. 
T Consensus       237 d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH-~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~-  314 (893)
T KOG0291|consen  237 DEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFH-KGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVS-  314 (893)
T ss_pred             cccccccchhhhcceEEEEEEeeeecccccceeeeecc-CCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEE-
Confidence                           0011111 122223678888887 4778999999999999999999999999998888999987 


Q ss_pred             eeecCCCEEEEEE-eCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccc
Q 004214          291 CALSSGKILIVTG-SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN  369 (768)
Q Consensus       291 ~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  369 (768)
                       +...|.+ ++.| +.-|.+-+|+.++...+...++|...+++++++|||+ ++++|+.||.|++||...          
T Consensus       315 -~N~tGDW-iA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~S----------  381 (893)
T KOG0291|consen  315 -FNSTGDW-IAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQS----------  381 (893)
T ss_pred             -ecccCCE-EEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccC----------
Confidence             7788888 5555 4559999999999999999999999999999999987 899999999999999874          


Q ss_pred             cceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC-CCeEEEEEccCCCEEEEeeCCC-cEE
Q 004214          370 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK-RGIWSVEFSPVDQVVITASGDK-TIK  447 (768)
Q Consensus       370 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~t~~~d~-~i~  447 (768)
                      .-+..++..|...|+++.|+..|+.+++++.||+|+.||+...+..+++.... ....|++..|.|.++.+|+.|. .|.
T Consensus       382 gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~If  461 (893)
T KOG0291|consen  382 GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIF  461 (893)
T ss_pred             ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEE
Confidence            34788889999999999999999999999999999999999999888887643 3568899999999999998875 599


Q ss_pred             EEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC-eEEEEeccCCCcEEEEEEcCCCCEEEEEeC
Q 004214          448 IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG-ECIATYDKHEDKIWALAVGKKTEMFATGGS  526 (768)
Q Consensus       448 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~  526 (768)
                      +|++++|+.+-.+.||.++|.+++|+|.|..|++++.|.+|++||+-.. ..+.++. +...+.+++|+|+|+.|+++..
T Consensus       462 vWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTl  540 (893)
T KOG0291|consen  462 VWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATL  540 (893)
T ss_pred             EEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEe
Confidence            9999999999999999999999999999999999999999999998654 3455665 7788999999999999999999


Q ss_pred             CCcEEEEEcCCHHH
Q 004214          527 DALVNLWHDSTAAE  540 (768)
Q Consensus       527 dg~v~vw~~~~~~~  540 (768)
                      ||.|.+||...+..
T Consensus       541 dgqItf~d~~~~~q  554 (893)
T KOG0291|consen  541 DGQITFFDIKEAVQ  554 (893)
T ss_pred             cceEEEEEhhhcee
Confidence            99999999876543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=7.6e-45  Score=350.35  Aligned_cols=484  Identities=16%  Similarity=0.207  Sum_probs=383.4

Q ss_pred             ecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCee--EEEecCccceeEEEEEc
Q 004214            6 EGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC--VATLDKHFSRVTSMAIT   83 (768)
Q Consensus         6 g~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~--~~~l~~h~~~V~~l~fs   83 (768)
                      +..+..|.+-++++...+..+.+|..+++-..|||.|.+  +|+|...|+|||||....+.  ..+++.-.++|..|+|+
T Consensus        35 Y~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~y--iASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd  112 (603)
T KOG0318|consen   35 YTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFY--IASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWD  112 (603)
T ss_pred             EeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceE--EeecCCcCcEEEEeccCcceeeeeeeeecccccccceeC
Confidence            456788999999999999999999999999999999876  99999999999999865433  35567788999999999


Q ss_pred             CCCCEEEEEeC--CCeEEEEECCCCeeeeeeeccee-EeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCc
Q 004214           84 SDGSTLISAGR--DKVVNLWDLRDYSCKLTVPTYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG  160 (768)
Q Consensus        84 ~d~~~L~s~~~--dg~i~vWd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  160 (768)
                      +|+++++..|.  +...+++-+.+|..+..+..+.. +.++.|-|..                      +.+++++++|+
T Consensus       113 ~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsR----------------------PfRi~T~sdDn  170 (603)
T KOG0318|consen  113 FDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSR----------------------PFRIATGSDDN  170 (603)
T ss_pred             CCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCC----------------------ceEEEeccCCC
Confidence            99999998874  33334444445666666665554 5666666544                      34899999999


Q ss_pred             EEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCC
Q 004214          161 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE  240 (768)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (768)
                      .+.+|+-.          +.........+..-+.++.|+|++..+++++.||.+.+|+-....    ..-......+|.+
T Consensus       171 ~v~ffeGP----------PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge----~vg~l~~~~aHkG  236 (603)
T KOG0318|consen  171 TVAFFEGP----------PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE----KVGELEDSDAHKG  236 (603)
T ss_pred             eEEEeeCC----------CeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc----EEEEecCCCCccc
Confidence            99998643          223334445566788899999999999999999999999988764    2222333568999


Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214          241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV  320 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  320 (768)
                      .|..++|+| +...+++++.|.+++|||+.+.++++++......-...-.|.+. +.. |++.+-+|.|.+++.....++
T Consensus       237 sIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd~-lItVSl~G~in~ln~~d~~~~  313 (603)
T KOG0318|consen  237 SIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KDH-LITVSLSGTINYLNPSDPSVL  313 (603)
T ss_pred             cEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CCe-EEEEEcCcEEEEecccCCChh
Confidence            999999995 88899999999999999999999998886544311111122344 334 899999999999999999999


Q ss_pred             EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC
Q 004214          321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ  400 (768)
Q Consensus       321 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  400 (768)
                      ..+.+|...|+++..+|+++ +|++|+.||.|.-|+...+...         ...-..|...|.+++.+..+. +++.+.
T Consensus       314 ~~i~GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~~g~~~---------~~~g~~h~nqI~~~~~~~~~~-~~t~g~  382 (603)
T KOG0318|consen  314 KVISGHNKSITALTVSPDGK-TIYSGSYDGHINSWDSGSGTSD---------RLAGKGHTNQIKGMAASESGE-LFTIGW  382 (603)
T ss_pred             heecccccceeEEEEcCCCC-EEEeeccCceEEEEecCCcccc---------ccccccccceEEEEeecCCCc-EEEEec
Confidence            99999999999999999985 8999999999999999865321         122256888899998876554 566677


Q ss_pred             CCcEEEEeCCCCc------------e-------------------EEEEecc--------CCCeEEEEEccCCCEEEEee
Q 004214          401 DRTACVWRLPDLV------------S-------------------VVTFRGH--------KRGIWSVEFSPVDQVVITAS  441 (768)
Q Consensus       401 dg~i~i~d~~~~~------------~-------------------~~~~~~~--------~~~v~~v~~s~~~~~l~t~~  441 (768)
                      |.++++.++....            +                   +..++.+        .....+++++|++..+++|+
T Consensus       383 Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG  462 (603)
T KOG0318|consen  383 DDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG  462 (603)
T ss_pred             CCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec
Confidence            8888888763210            0                   0111111        23467899999999999999


Q ss_pred             CCCcEEEEeCCCCce--eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCcEEEEEEcCCC
Q 004214          442 GDKTIKIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY-DKHEDKIWALAVGKKT  518 (768)
Q Consensus       442 ~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~s~~~  518 (768)
                      .|+.|+||.+..+..  ...+..|.++|++++||||+.||++|...+.+.+||+.+.+..... --|...|.+++|+|+.
T Consensus       463 ~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n  542 (603)
T KOG0318|consen  463 QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN  542 (603)
T ss_pred             ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc
Confidence            999999999977553  3355679999999999999999999999999999999998874433 3399999999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCHHHH
Q 004214          519 EMFATGGSDALVNLWHDSTAAER  541 (768)
Q Consensus       519 ~~l~s~~~dg~v~vw~~~~~~~~  541 (768)
                      .++|||+-|-.|.||+++.+...
T Consensus       543 ~~vATGSlDt~Viiysv~kP~~~  565 (603)
T KOG0318|consen  543 KLVATGSLDTNVIIYSVKKPAKH  565 (603)
T ss_pred             eEEEeccccceEEEEEccChhhh
Confidence            99999999999999999876543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1e-44  Score=363.63  Aligned_cols=482  Identities=21%  Similarity=0.338  Sum_probs=376.8

Q ss_pred             EeecCCCcEEEEECCCCEEEEEEE--cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214            4 LLEGADRKVLVWDVDGGFCTHYFK--GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA   81 (768)
Q Consensus         4 atg~~dg~i~vwd~~~~~~~~~l~--gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~   81 (768)
                      ++++....|.+||+.+|.....+.  .-...|+|++-+|+...  ||.|..||.|+||+..++....++.||...|+.+.
T Consensus        37 va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~--lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~  114 (888)
T KOG0306|consen   37 VAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILL--LAVGYADGSVQIFSLESEEILITFNGHKAAVTTLK  114 (888)
T ss_pred             EEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcce--EEEEecCceEEeeccCCCceeeeecccccceEEEE
Confidence            344567789999999996555443  34568999999997655  99999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecce-eEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCc
Q 004214           82 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG  160 (768)
Q Consensus        82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  160 (768)
                      |...|..|+|||.|+.|.+||+-.......+..+. .+...-|.....                       .+++.+.|+
T Consensus       115 fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~-----------------------~lvS~sKDs  171 (888)
T KOG0306|consen  115 FDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDS-----------------------FLVSVSKDS  171 (888)
T ss_pred             EcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCe-----------------------EEEEeccCc
Confidence            99999999999999999999998888888877644 455555555333                       899999999


Q ss_pred             EEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccc--------------
Q 004214          161 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK--------------  226 (768)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~--------------  226 (768)
                      .|++||+++...+.....          +...+..+++.+  ..+++++.++.+.+|++.......              
T Consensus       172 ~iK~WdL~tqhCf~Thvd----------~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~  239 (888)
T KOG0306|consen  172 MIKFWDLETQHCFETHVD----------HRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF  239 (888)
T ss_pred             eEEEEecccceeeeEEec----------ccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeecccee
Confidence            999999999955433222          224455555555  788888899999999882221110              


Q ss_pred             --------eeeEE-------------------------------Ee-----------------------------eeccc
Q 004214          227 --------MELIL-------------------------------SK-----------------------------RLVGY  238 (768)
Q Consensus       227 --------~~~~~-------------------------------~~-----------------------------~~~~~  238 (768)
                              .++..                               .+                             .....
T Consensus       240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~  319 (888)
T KOG0306|consen  240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT  319 (888)
T ss_pred             eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence                    00000                               00                             00001


Q ss_pred             CCceeEEEEecCCCCE-EEEEeCCCcEEEEECCCceee---------eeeeCCccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214          239 NEEILDLKFLGEEEQY-LAVATNIEQVQVYDLSSMSCS---------YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS  308 (768)
Q Consensus       239 ~~~i~~~~~~~~~~~~-l~~~~~~~~i~i~d~~~~~~~---------~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~  308 (768)
                      ...+.++.+.+..+.. .++...++.+..|.++.....         ..+.+|...|.+++  ++.+ ..++++| ..+.
T Consensus       320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~--vS~d-~~~~~Sg-a~~S  395 (888)
T KOG0306|consen  320 SAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLC--VSSD-SILLASG-AGES  395 (888)
T ss_pred             hhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEE--eecC-ceeeeec-CCCc
Confidence            2334455555433222 233356678888877652211         35679999999996  4444 4434444 4679


Q ss_pred             EEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEE
Q 004214          309 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV  388 (768)
Q Consensus       309 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  388 (768)
                      +++|+..+.++++++..  +.+.+..|.|.+. ++++|...|.+.+||+...          .......+|.+.|.+++.
T Consensus       396 ikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~-~Iv~G~k~Gel~vfdlaS~----------~l~Eti~AHdgaIWsi~~  462 (888)
T KOG0306|consen  396 IKIWNRDTLKCIRTITC--GYILASKFVPGDR-YIVLGTKNGELQVFDLASA----------SLVETIRAHDGAIWSISL  462 (888)
T ss_pred             EEEEEccCcceeEEecc--ccEEEEEecCCCc-eEEEeccCCceEEEEeehh----------hhhhhhhccccceeeeee
Confidence            99999999999998874  3888999999855 8999999999999999843          344555689999999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEeCCC-----CceEEEEe-------ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce
Q 004214          389 APNDSLVCTGSQDRTACVWRLPD-----LVSVVTFR-------GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC  456 (768)
Q Consensus       389 s~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~-------~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~  456 (768)
                      +||++.+++|+.|.+|++||+.-     +.....+.       .-...|.|+.+||||++|+++--|.+|+||-+++-+.
T Consensus       463 ~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF  542 (888)
T KOG0306|consen  463 SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF  542 (888)
T ss_pred             cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee
Confidence            99999999999999999999741     11111111       1356799999999999999999999999999999999


Q ss_pred             eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          457 LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       457 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      .-++.||.-||.++.+|||++.++||+.|.+|+||-++-|.|.+.+.+|.+.|.++.|-|....+.++|.||.|+-||-.
T Consensus       543 flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~  622 (888)
T KOG0306|consen  543 FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGE  622 (888)
T ss_pred             eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             CHH
Q 004214          537 TAA  539 (768)
Q Consensus       537 ~~~  539 (768)
                      .-+
T Consensus       623 kFe  625 (888)
T KOG0306|consen  623 KFE  625 (888)
T ss_pred             hhh
Confidence            433

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-46  Score=360.51  Aligned_cols=430  Identities=20%  Similarity=0.313  Sum_probs=370.6

Q ss_pred             cccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214          236 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE  315 (768)
Q Consensus       236 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~  315 (768)
                      ....+.|.+++|+|..+..+|++++ -.+.+|+..+....+.+......+.+++  +-++|. ++++|...|.|++||+.
T Consensus        23 ~ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~--fR~DG~-LlaaGD~sG~V~vfD~k   98 (487)
T KOG0310|consen   23 HKEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVD--FRSDGR-LLAAGDESGHVKVFDMK   98 (487)
T ss_pred             ccccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEE--eecCCe-EEEccCCcCcEEEeccc
Confidence            3446789999999988888888776 7899999999998888888899999987  666666 49999999999999988


Q ss_pred             CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCE
Q 004214          316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSL  394 (768)
Q Consensus       316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~  394 (768)
                      +...++.+.+|+.++..+.|+|.+...+++|+.|+.+++||+.+.          .......+|.+.|.|.+|+| ++.+
T Consensus        99 ~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a----------~v~~~l~~htDYVR~g~~~~~~~hi  168 (487)
T KOG0310|consen   99 SRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA----------YVQAELSGHTDYVRCGDISPANDHI  168 (487)
T ss_pred             cHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc----------EEEEEecCCcceeEeeccccCCCeE
Confidence            888889999999999999999999999999999999999999853          23557789999999999999 5679


Q ss_pred             EEEEeCCCcEEEEeCCCC-ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC-ceeEEeecCCCcEEEEEE
Q 004214          395 VCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASF  472 (768)
Q Consensus       395 l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~  472 (768)
                      +++|++||.|++||++.. ..+.++. |..+|.++.+-|.|..++++++ ..|+|||+.+| +.+..+..|...|||+++
T Consensus       169 vvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l  246 (487)
T KOG0310|consen  169 VVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRL  246 (487)
T ss_pred             EEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEe
Confidence            999999999999999987 5566665 9999999999999999999987 78999999855 555666669999999999


Q ss_pred             EeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHHHHHH-------
Q 004214          473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAF-------  545 (768)
Q Consensus       473 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-------  545 (768)
                      ..++..|++|+-||.|++||+.+.+.+..+. ..++|.+++.+|+++.++.|..||.+.+-+....++.....       
T Consensus       247 ~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~s~~~~~r~~r~  325 (487)
T KOG0310|consen  247 ASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKPSKEPKRRADRS  325 (487)
T ss_pred             ecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhcccCCCcccccccccc
Confidence            9999999999999999999999999999997 88999999999999999999999998887544332211100       


Q ss_pred             ------------HH-------HHHHHHhhhHHHHhhcccchHHHHHHHhh-cCCchhHHHHHHHHHhchhhHHHHHHHHh
Q 004214          546 ------------RK-------EEEAVLRGQELENAVLDADYTKAIQVAFE-LRRPHKLFELFASVCRKREAELQIEKALH  605 (768)
Q Consensus       546 ------------~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  605 (768)
                                  ..       ++..-.+...++..+..++|.+|++.+++ ...|    +++.+++.+..+++.+..|+.
T Consensus       326 ~~~~v~~r~~~~~~~~ddiv~n~~~r~~L~~~Dk~Lk~F~~kkALd~vl~~~~~p----elvvavl~eL~~Rg~l~~AL~  401 (487)
T KOG0310|consen  326 DGFFVKVRGQNYKGQKDDIVVNEVKRLKLTYFDKRLKQFKHKKALDHVLEPKKDP----ELVVAVLSELVHRGGLRRALA  401 (487)
T ss_pred             ccceEeeeccccccccceeEeccccccCCchHHHHHhhhhHHHHHHHHhcccCCh----hHHHHHHHHHHHhhHHHHHhc
Confidence                        00       00011234568889999999999999999 4455    445556666667779999999


Q ss_pred             hcCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhccCCcchhhcccChHhHHHhhccchHhHHHHHHHhHhhhhhhhee
Q 004214          606 ALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYT  685 (768)
Q Consensus       606 ~l~~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~  685 (768)
                      ++++.++..||.||.+.++.+|++.++..|...||.+|+.. +...|.+.+.++.|...++++..-.+++++..|+||++
T Consensus       402 grde~eL~~lLnfl~~~l~~~rf~~~L~~~~~~iLd~Y~~~-i~~s~~l~k~i~~L~~~V~~Ev~~q~ellr~~G~ldmL  480 (487)
T KOG0310|consen  402 GRDESELAPLLNFLVKNLTVVRFASILMEVVSVILDLYARD-IEGSPMLAKLIQALRGKVEQEVRVQKELLRLIGMLDML  480 (487)
T ss_pred             CccHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhh-hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999774 77789999999999999999999999999999999998


Q ss_pred             cc
Q 004214          686 LT  687 (768)
Q Consensus       686 ~~  687 (768)
                      ..
T Consensus       481 ~~  482 (487)
T KOG0310|consen  481 GS  482 (487)
T ss_pred             hH
Confidence            73

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.6e-44  Score=359.28  Aligned_cols=519  Identities=18%  Similarity=0.244  Sum_probs=404.4

Q ss_pred             EeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEe--CCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214            4 LLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS--DDATVRVWDLLAKKCVATLDKHFSRVTSMA   81 (768)
Q Consensus         4 atg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~--~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~   81 (768)
                      +++-++-.|.+||++....-|.+..|..+++|++|||+|++  +|+|-  ....++||++.....+..|..|...|+|++
T Consensus        52 ~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~Gry--vatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcva  129 (1080)
T KOG1408|consen   52 CAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRY--VATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVA  129 (1080)
T ss_pred             eeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcE--EEecccCCCccceeeeeccccchhhhhhccccceeee
Confidence            34556778999999999888888899999999999999998  99985  677899999999999999999999999999


Q ss_pred             EcCCCCEEEEEeC--CCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCcccc--------------------------
Q 004214           82 ITSDGSTLISAGR--DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSF--------------------------  133 (768)
Q Consensus        82 fs~d~~~L~s~~~--dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--------------------------  133 (768)
                      |+|.++|+++.|.  |-.|.+|||+.......-.....+..++|+.+++.+...                          
T Consensus       130 Fsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs  209 (1080)
T KOG1408|consen  130 FSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRS  209 (1080)
T ss_pred             ecCCCcEEEeeccccceEEEhhhhhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchh
Confidence            9999999999885  567899999877766666677778888888888643211                          


Q ss_pred             --ccccch------------------------------------------hhhhcccCCcceEEEEeeCCcEEEEEEcCC
Q 004214          134 --LSSYNQ------------------------------------------QTIKKKRRSLEIHFITVGERGIVRMWNADS  169 (768)
Q Consensus       134 --~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~  169 (768)
                        ++....                                          ............++++++.+|.|++|+..+
T Consensus       210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~t  289 (1080)
T KOG1408|consen  210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPET  289 (1080)
T ss_pred             hhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcch
Confidence              000000                                          000001111456789999999999999887


Q ss_pred             ceeeeecCCceee--------------cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeee
Q 004214          170 ACLYEQKSSDVTI--------------SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL  235 (768)
Q Consensus       170 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~  235 (768)
                      -............              ............++.|.+..+.+.|+..|..+++|++.+....    -.....
T Consensus       290 L~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kv----gk~~s~  365 (1080)
T KOG1408|consen  290 LDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKV----GKCSSM  365 (1080)
T ss_pred             hhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccc----cceeee
Confidence            7333221111110              1111112234567789999999999999999999999876532    223344


Q ss_pred             cccCCceeEEEEecC----------CCCEEEEEeCCCcEEEEECCCceeee-----------------------------
Q 004214          236 VGYNEEILDLKFLGE----------EEQYLAVATNIEQVQVYDLSSMSCSY-----------------------------  276 (768)
Q Consensus       236 ~~~~~~i~~~~~~~~----------~~~~l~~~~~~~~i~i~d~~~~~~~~-----------------------------  276 (768)
                      ..|...|.++.-.|-          -...+.+++.|++|++|++..+..-.                             
T Consensus       366 lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~  445 (1080)
T KOG1408|consen  366 LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASA  445 (1080)
T ss_pred             eeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccC
Confidence            556666666655441          12468999999999999997621100                             


Q ss_pred             --------eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecC--CCcEEEEE
Q 004214          277 --------VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK--LQNFLVSG  346 (768)
Q Consensus       277 --------~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~s~  346 (768)
                              ........+.+++  .+|++.. |++|..-|.+++|++..-+....+..|...|.|+.++..  +..+|+++
T Consensus       446 ~~fdka~~s~~d~r~G~R~~~--vSp~gqh-LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASa  522 (1080)
T KOG1408|consen  446 GIFDKALVSTCDSRFGFRALA--VSPDGQH-LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASA  522 (1080)
T ss_pred             CcccccchhhcCcccceEEEE--ECCCcce-ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhc
Confidence                    0112344577776  7777776 999999999999999999999999999999999999853  34589999


Q ss_pred             eCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC--CEEEEEeCCCcEEEEeCCCCceEEEEec----
Q 004214          347 SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND--SLVCTGSQDRTACVWRLPDLVSVVTFRG----  420 (768)
Q Consensus       347 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~----  420 (768)
                      +.|.-|.+||+..         ......++.+|...|+++.|..+|  ..+++++.|+.|.+--.+.......+..    
T Consensus       523 srdRlIHV~Dv~r---------ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t  593 (1080)
T KOG1408|consen  523 SRDRLIHVYDVKR---------NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQT  593 (1080)
T ss_pred             cCCceEEEEeccc---------ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccc
Confidence            9999999999874         445677788999999999999987  7889999998876644332211122222    


Q ss_pred             -cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec---CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC
Q 004214          421 -HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG  496 (768)
Q Consensus       421 -~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  496 (768)
                       ....+..++..|..+++++++.|+.|+|||+.+|+..+.|++   |.+....+...|.|.||++.+.|.++.++|.-+|
T Consensus       594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg  673 (1080)
T KOG1408|consen  594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG  673 (1080)
T ss_pred             cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence             234688999999999999999999999999999999999984   6778889999999999999999999999999999


Q ss_pred             eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214          497 ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE  540 (768)
Q Consensus       497 ~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~  540 (768)
                      +|+.+..+|...|+.+.|.+|.+.|++.+.||.|.||.+.....
T Consensus       674 EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mi  717 (1080)
T KOG1408|consen  674 ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMI  717 (1080)
T ss_pred             hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhHh
Confidence            99999999999999999999999999999999999999987443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=8.5e-43  Score=354.17  Aligned_cols=488  Identities=17%  Similarity=0.241  Sum_probs=396.6

Q ss_pred             EEEeecCCCcEEEEECCCC-----EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccce
Q 004214            2 FALLEGADRKVLVWDVDGG-----FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSR   76 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~-----~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~   76 (768)
                      ++.++..++.+.||+..++     .....++.-.+.|+++ +||....+-++.|+.+|.+.+||+.+++.+++++++...
T Consensus       126 ~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~  204 (910)
T KOG1539|consen  126 HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSR  204 (910)
T ss_pred             eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccc
Confidence            4667788999999999874     1112233333348887 688877777999999999999999999999999999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc-eeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEE
Q 004214           77 VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT  155 (768)
Q Consensus        77 V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (768)
                      |+++.-+|-=..++.|..+|+|.+++++.++.+.++... ..+.++.|..+|..                      .+++
T Consensus       205 IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p----------------------~las  262 (910)
T KOG1539|consen  205 ITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP----------------------LLAS  262 (910)
T ss_pred             eeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCe----------------------eEEe
Confidence            999999998889999999999999999999999999996 88999999999873                      6888


Q ss_pred             eeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeee
Q 004214          156 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL  235 (768)
Q Consensus       156 ~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~  235 (768)
                      ++..|.+.+||++...+.....         ..+..++....+.|....+++.+.|+.+++|-...+...   ....+..
T Consensus       263 ~~~~G~m~~wDLe~kkl~~v~~---------nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~---pR~LR~R  330 (910)
T KOG1539|consen  263 GRSNGDMAFWDLEKKKLINVTR---------NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV---PRLLRSR  330 (910)
T ss_pred             ccCCceEEEEEcCCCeeeeeee---------ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc---chheeec
Confidence            8889999999999885543322         123467788889999999999999999999877754432   3345667


Q ss_pred             cccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeee------------------eeCCccceEEEeeeee--cC
Q 004214          236 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV------------------LAGHSEIVLCLDTCAL--SS  295 (768)
Q Consensus       236 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~------------------~~~~~~~v~~l~~~~~--~~  295 (768)
                      .||..+..++.|...++..+..++.|+..+.+++.....-+.                  ....-.+|..+++...  ..
T Consensus       331 ~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~  410 (910)
T KOG1539|consen  331 GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKE  410 (910)
T ss_pred             cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhh
Confidence            899999999999999999999999999999988753221110                  0112234444431111  11


Q ss_pred             CCEEEEEEeCCCeEEEEeCCCceEEE-ee-----ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccc
Q 004214          296 GKILIVTGSKDNSVRLWDSESRCCVG-VG-----TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN  369 (768)
Q Consensus       296 ~~~~l~~~~~dg~i~iwd~~~~~~~~-~~-----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  369 (768)
                      ..+.++..-.+...+.|++++...-+ .+     +.....+++++.++.|+ +.+.|...|+|-+|++.++-...     
T Consensus       411 W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~~IG~S~G~Id~fNmQSGi~r~-----  484 (910)
T KOG1539|consen  411 WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FVFIGYSKGTIDRFNMQSGIHRK-----  484 (910)
T ss_pred             hcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc-eEEEeccCCeEEEEEcccCeeec-----
Confidence            22335555567789999998765422 22     22347899999999976 88999999999999998653211     


Q ss_pred             cceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEE
Q 004214          370 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIW  449 (768)
Q Consensus       370 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iw  449 (768)
                        .......|..+|++++.+.-++.+++++.+|.+++||+.+...+..++ -..+++++..+....+++.+..|-.|+++
T Consensus       485 --sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vv  561 (910)
T KOG1539|consen  485 --SFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVV  561 (910)
T ss_pred             --ccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEE
Confidence              111225799999999999999999999999999999999988777776 46678899999999999999999999999


Q ss_pred             eCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-C
Q 004214          450 SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD-A  528 (768)
Q Consensus       450 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d-g  528 (768)
                      |..+.+.++.|.||.+.|++++|||||++|++++.|++|++||+.++.++..+. -..+.+++.|||+|.+|||...| .
T Consensus       562 D~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~  640 (910)
T KOG1539|consen  562 DVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQN  640 (910)
T ss_pred             EchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCc
Confidence            999999999999999999999999999999999999999999999999999886 67889999999999999999988 4


Q ss_pred             cEEEEE
Q 004214          529 LVNLWH  534 (768)
Q Consensus       529 ~v~vw~  534 (768)
                      -|++|-
T Consensus       641 gIylWs  646 (910)
T KOG1539|consen  641 GIYLWS  646 (910)
T ss_pred             eEEEEE
Confidence            589996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.2e-45  Score=346.91  Aligned_cols=287  Identities=28%  Similarity=0.416  Sum_probs=268.8

Q ss_pred             eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecC-CCEEEEEEeCCCeEEEE
Q 004214          234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSVRLW  312 (768)
Q Consensus       234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~-~~~~l~~~~~dg~i~iw  312 (768)
                      ...|...++..+.|+ .++..+++|+-+|.+++|+..+...+.++.+|...+.++.  |.|. ...-+++|+.||++++|
T Consensus       170 SQ~gd~rPis~~~fS-~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~--fhP~~~~~~lat~s~Dgtvklw  246 (459)
T KOG0272|consen  170 SQVGDTRPISGCSFS-RDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAV--FHPVDSDLNLATASADGTVKLW  246 (459)
T ss_pred             hhccCCCcceeeEee-cCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEE--EccCCCccceeeeccCCceeee
Confidence            334556677777776 5889999999999999999999999999999999999998  6676 34459999999999999


Q ss_pred             eCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214          313 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND  392 (768)
Q Consensus       313 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  392 (768)
                      ++.+..++..+.+|...|..++|+|+|+ +|.+++.|.+-++||+...          .......+|...|.+++|.|||
T Consensus       247 ~~~~e~~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk----------~ElL~QEGHs~~v~~iaf~~DG  315 (459)
T KOG0272|consen  247 KLSQETPLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETK----------SELLLQEGHSKGVFSIAFQPDG  315 (459)
T ss_pred             ccCCCcchhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccc----------hhhHhhcccccccceeEecCCC
Confidence            9999999999999999999999999987 8999999999999999854          3455568899999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEE
Q 004214          393 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF  472 (768)
Q Consensus       393 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  472 (768)
                      .++++|+.|..-+|||++++.++..+.+|..+|.+|+|+|+|..||||+.|++++|||++..+++.++.+|.+-|+.++|
T Consensus       316 SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~  395 (459)
T KOG0272|consen  316 SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKY  395 (459)
T ss_pred             ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ee-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214          473 LT-RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  534 (768)
Q Consensus       473 s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~  534 (768)
                      +| .|.+|+|++.|++++||...++.+++++.+|.+.|.+++++|+++++++++.|.++++|.
T Consensus       396 ~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  396 SPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            98 788999999999999999999999999999999999999999999999999999999996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.6e-43  Score=330.19  Aligned_cols=284  Identities=31%  Similarity=0.430  Sum_probs=260.2

Q ss_pred             EcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCC--CCEEEEEeCCCeEEEEECC
Q 004214           27 KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD--GSTLISAGRDKVVNLWDLR  104 (768)
Q Consensus        27 ~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d--~~~L~s~~~dg~i~vWd~~  104 (768)
                      .|-+.+|..+.||+|++.  ||||+.+|.++||+..+...+.+|.+|.+.|.++.|+|.  +..|+||+.||++++|++.
T Consensus       172 ~gd~rPis~~~fS~ds~~--laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~  249 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKH--LATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS  249 (459)
T ss_pred             ccCCCcceeeEeecCCCe--EEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence            467889999999999988  999999999999999999999999999999999999997  5689999999999998875


Q ss_pred             CCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecc
Q 004214          105 DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF  184 (768)
Q Consensus       105 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~  184 (768)
                      +-.+                                                                            
T Consensus       250 ~e~~----------------------------------------------------------------------------  253 (459)
T KOG0272|consen  250 QETP----------------------------------------------------------------------------  253 (459)
T ss_pred             CCcc----------------------------------------------------------------------------
Confidence            4221                                                                            


Q ss_pred             cccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcE
Q 004214          185 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV  264 (768)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i  264 (768)
                                                                                                      
T Consensus       254 --------------------------------------------------------------------------------  253 (459)
T KOG0272|consen  254 --------------------------------------------------------------------------------  253 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEE
Q 004214          265 QVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV  344 (768)
Q Consensus       265 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  344 (768)
                                +..+.+|...|..++  |.|+|.. |+|++.|.+-++||+.++..+....||...|.+++|.|+|. +++
T Consensus       254 ----------l~~l~gH~~RVs~Va--fHPsG~~-L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS-L~~  319 (459)
T KOG0272|consen  254 ----------LQDLEGHLARVSRVA--FHPSGKF-LGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS-LAA  319 (459)
T ss_pred             ----------hhhhhcchhhheeee--ecCCCce-eeecccccchhhcccccchhhHhhcccccccceeEecCCCc-eee
Confidence                      224455666666665  6677765 99999999999999999999999999999999999999987 899


Q ss_pred             EEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCC
Q 004214          345 SGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRG  424 (768)
Q Consensus       345 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  424 (768)
                      +|+-|..-++||++++          .....+.+|.++|.+++|+|+|-.||+|+.|++++|||++....+.++.+|..-
T Consensus       320 tGGlD~~~RvWDlRtg----------r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl  389 (459)
T KOG0272|consen  320 TGGLDSLGRVWDLRTG----------RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL  389 (459)
T ss_pred             ccCccchhheeecccC----------cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence            9999999999999944          578888999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcc-CCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214          425 IWSVEFSP-VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT  492 (768)
Q Consensus       425 v~~v~~s~-~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  492 (768)
                      |+.|.|+| .|.+|+|++.|++++||...++.+++++.||.+.|.++.+++++.++++++.|.++++|.
T Consensus       390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            99999999 789999999999999999999999999999999999999999999999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.5e-41  Score=301.85  Aligned_cols=294  Identities=26%  Similarity=0.408  Sum_probs=263.3

Q ss_pred             EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214           23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD  102 (768)
Q Consensus        23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd  102 (768)
                      .+.|+||.+.|.++.|++|+++  +++++.||.+.|||.-+...++.++-....|..++|+|.|+++|+||-|+...||+
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~--ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRR--IVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP  125 (343)
T ss_pred             EEEecccccceeeeEecCCcCe--EEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence            4789999999999999999998  99999999999999999999999998999999999999999999999999999998


Q ss_pred             CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214          103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI  182 (768)
Q Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~  182 (768)
                      +.+....                                                                         
T Consensus       126 ls~~d~~-------------------------------------------------------------------------  132 (343)
T KOG0286|consen  126 LSTRDAE-------------------------------------------------------------------------  132 (343)
T ss_pred             ccccccc-------------------------------------------------------------------------
Confidence            7642100                                                                         


Q ss_pred             cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214          183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE  262 (768)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~  262 (768)
                                                                                                     |
T Consensus       133 -------------------------------------------------------------------------------g  133 (343)
T KOG0286|consen  133 -------------------------------------------------------------------------------G  133 (343)
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           0


Q ss_pred             cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcE
Q 004214          263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF  342 (768)
Q Consensus       263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  342 (768)
                      .        -...+.+.+|.+.+.|..  |.. +.. |+|++.|.+..+||+++++.+..+.+|.+.|.++.++|...+.
T Consensus       134 ~--------~~v~r~l~gHtgylScC~--f~d-D~~-ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt  201 (343)
T KOG0286|consen  134 N--------VRVSRELAGHTGYLSCCR--FLD-DNH-ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT  201 (343)
T ss_pred             c--------ceeeeeecCccceeEEEE--EcC-CCc-eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence            0        011235678888888875  444 555 9999999999999999999999999999999999999955668


Q ss_pred             EEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec--
Q 004214          343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--  420 (768)
Q Consensus       343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--  420 (768)
                      +++|+-|+..++||++.+          .....+.+|..+|+++.|.|+|.-+++|+.|+++++||++....+..+..  
T Consensus       202 FvSg~cD~~aklWD~R~~----------~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~  271 (343)
T KOG0286|consen  202 FVSGGCDKSAKLWDVRSG----------QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS  271 (343)
T ss_pred             EEecccccceeeeeccCc----------ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc
Confidence            999999999999999944          47888999999999999999999999999999999999999988887763  


Q ss_pred             cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214          421 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT  492 (768)
Q Consensus       421 ~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  492 (768)
                      -..+|++++||..|++|++|..|.++.+||.-.++.+..+.||.+.|+++..+|||.-+++|+.|.+++||.
T Consensus       272 ~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  272 IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            235899999999999999999999999999999999999999999999999999999999999999999994

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=9.4e-40  Score=292.69  Aligned_cols=291  Identities=22%  Similarity=0.366  Sum_probs=267.9

Q ss_pred             eeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC
Q 004214          228 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN  307 (768)
Q Consensus       228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg  307 (768)
                      .+...+.+.||...|.++.|.+ +.+++++++.||.+.|||.-+...+..++.....|...+  +.|.+.. ++.|+-|+
T Consensus        44 ~~~~rr~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA--~sPSg~~-VAcGGLdN  119 (343)
T KOG0286|consen   44 QMRTRRTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCA--YSPSGNF-VACGGLDN  119 (343)
T ss_pred             eeeeEEEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEE--ECCCCCe-EEecCcCc
Confidence            4455688999999999999985 889999999999999999999999888888888888776  7777765 99999999


Q ss_pred             eEEEEeCCCc------eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC
Q 004214          308 SVRLWDSESR------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK  381 (768)
Q Consensus       308 ~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  381 (768)
                      ...||++.+.      ...+.+.+|++.+.++.|.+++  .|++++.|.+..+||++.+          .....+.+|..
T Consensus       120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g----------~~~~~f~GH~g  187 (343)
T KOG0286|consen  120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETG----------QQTQVFHGHTG  187 (343)
T ss_pred             eeEEEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccc----------eEEEEecCCcc
Confidence            9999999865      4556788999999999999975  4999999999999999844          46778889999


Q ss_pred             CeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214          382 DINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF  460 (768)
Q Consensus       382 ~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~  460 (768)
                      +|.+++++| +++.+++|+.|+..++||++.+...++|.+|...|+++.|.|+|.-+++|+.|++.++||++..+.+..+
T Consensus       188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~y  267 (343)
T KOG0286|consen  188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVY  267 (343)
T ss_pred             cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeee
Confidence            999999999 9999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             ec--CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214          461 EG--HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  534 (768)
Q Consensus       461 ~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~  534 (768)
                      ..  -..+|++++||..|++|++|..|.++.+||.-.++.+..+.+|.++|.++..+|||..++||+-|..++||.
T Consensus       268 s~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  268 SHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            73  346899999999999999999999999999999999999999999999999999999999999999999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-39  Score=289.20  Aligned_cols=291  Identities=25%  Similarity=0.379  Sum_probs=256.5

Q ss_pred             eEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC-----ceeeeeeeCCccceEEEeeeeecCCCEEEEEE
Q 004214          229 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTG  303 (768)
Q Consensus       229 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~  303 (768)
                      +.....+.+|++.|..++..+.+.+.++.++.|..+.+|++..     |..++.+.||...|..+.  ..+++.. .+++
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~--~s~dg~~-alS~   81 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVV--LSSDGNF-ALSA   81 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceE--EccCCce-EEec
Confidence            4456678899999999999998899999999999999998754     667889999999999986  6666665 9999


Q ss_pred             eCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec--cCC
Q 004214          304 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA--HGK  381 (768)
Q Consensus       304 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~  381 (768)
                      +.|+++++||+.+++..+.+.+|...|.+++|+++.. .+++|+.|.+|++|++-..           ...+...  +..
T Consensus        82 swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~-----------ck~t~~~~~~~~  149 (315)
T KOG0279|consen   82 SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGV-----------CKYTIHEDSHRE  149 (315)
T ss_pred             cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeeccc-----------EEEEEecCCCcC
Confidence            9999999999999999999999999999999999965 7999999999999998643           2222222  367


Q ss_pred             CeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEE
Q 004214          382 DINSLAVAPN--DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT  459 (768)
Q Consensus       382 ~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~  459 (768)
                      -|+|+.|+|+  ..+|++++.|++|++||+++.+....+.+|.+.++.+++||||.++++|+.||.+.+||++.++++..
T Consensus       150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys  229 (315)
T KOG0279|consen  150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS  229 (315)
T ss_pred             cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe
Confidence            8999999997  78999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc----C-----CCcEEEEEEcCCCCEEEEEeCCCcE
Q 004214          460 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK----H-----EDKIWALAVGKKTEMFATGGSDALV  530 (768)
Q Consensus       460 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~-----~~~v~~l~~s~~~~~l~s~~~dg~v  530 (768)
                      +. |...|.+++|+|+.-+|+.+.. ..|+|||+.++.++..+..    .     .....+++|++||..|++|-.|+.|
T Consensus       230 l~-a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~i  307 (315)
T KOG0279|consen  230 LE-AFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVI  307 (315)
T ss_pred             cc-CCCeEeeEEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence            87 8899999999999877766554 4599999999988877642    1     2235678999999999999999999


Q ss_pred             EEEEcC
Q 004214          531 NLWHDS  536 (768)
Q Consensus       531 ~vw~~~  536 (768)
                      ++|.+.
T Consensus       308 rv~qv~  313 (315)
T KOG0279|consen  308 RVWQVA  313 (315)
T ss_pred             EEEEee
Confidence            999864

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-39  Score=286.27  Aligned_cols=292  Identities=26%  Similarity=0.462  Sum_probs=249.4

Q ss_pred             EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECC-----CCeeEEEecCccceeEEEEEcCCCCEEEEEeCC
Q 004214           21 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-----AKKCVATLDKHFSRVTSMAITSDGSTLISAGRD   95 (768)
Q Consensus        21 ~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~-----~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~d   95 (768)
                      ....+++||++.|+.++..+. ...++.+++.|.++.+|++.     .|.+++.|+||...|..+..++||++.++++.|
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~-~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD   84 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIK-NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD   84 (315)
T ss_pred             eeeeeecCCCceEEEEEeecC-CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence            345688999999999999997 45679999999999999874     467899999999999999999999999999999


Q ss_pred             CeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeee
Q 004214           96 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ  175 (768)
Q Consensus        96 g~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~  175 (768)
                      +++++||+.+++                                                                    
T Consensus        85 ~~lrlWDl~~g~--------------------------------------------------------------------   96 (315)
T KOG0279|consen   85 GTLRLWDLATGE--------------------------------------------------------------------   96 (315)
T ss_pred             ceEEEEEecCCc--------------------------------------------------------------------
Confidence            999999987653                                                                    


Q ss_pred             cCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEE
Q 004214          176 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL  255 (768)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  255 (768)
                                                                                                      
T Consensus        97 --------------------------------------------------------------------------------   96 (315)
T KOG0279|consen   97 --------------------------------------------------------------------------------   96 (315)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecc-cCcEEEEE
Q 004214          256 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVGAVA  334 (768)
Q Consensus       256 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~  334 (768)
                                        ..+.+.+|...|.+++  +++++.. +++|+.|.+|.+|+............. .+.|.|+.
T Consensus        97 ------------------~t~~f~GH~~dVlsva--~s~dn~q-ivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvr  155 (315)
T KOG0279|consen   97 ------------------STRRFVGHTKDVLSVA--FSTDNRQ-IVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVR  155 (315)
T ss_pred             ------------------EEEEEEecCCceEEEE--ecCCCce-eecCCCcceeeeeeecccEEEEEecCCCcCcEEEEE
Confidence                              1225667888888887  6676666 999999999999999877665554443 88999999


Q ss_pred             EecCC-CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 004214          335 FSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV  413 (768)
Q Consensus       335 ~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  413 (768)
                      |+|+. ..+++++++|++|++||++          ..+....+.+|...++.+++||||.+.++|+.||.+.+||++.++
T Consensus       156 fsP~~~~p~Ivs~s~DktvKvWnl~----------~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k  225 (315)
T KOG0279|consen  156 FSPNESNPIIVSASWDKTVKVWNLR----------NCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK  225 (315)
T ss_pred             EcCCCCCcEEEEccCCceEEEEccC----------CcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence            99985 4589999999999999998          445667778899999999999999999999999999999999999


Q ss_pred             eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee----cC-----CCcEEEEEEEeCCCEEEEEeC
Q 004214          414 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE----GH-----TSSVLRASFLTRGAQIVSCGA  484 (768)
Q Consensus       414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~----~~-----~~~v~~~~~s~~~~~l~s~~~  484 (768)
                      .+..+. |...|.+++|+|+.-.|+.+ .+..|+|||+.++.++..+.    +.     .....+++|++||..|++|..
T Consensus       226 ~lysl~-a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t  303 (315)
T KOG0279|consen  226 NLYSLE-AFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT  303 (315)
T ss_pred             eeEecc-CCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec
Confidence            988776 88999999999977666555 45679999999998887665    22     334578899999999999999


Q ss_pred             CCcEEEEECC
Q 004214          485 DGLVKLWTVR  494 (768)
Q Consensus       485 dg~i~iwd~~  494 (768)
                      |+.|++|.+.
T Consensus       304 d~~irv~qv~  313 (315)
T KOG0279|consen  304 DNVIRVWQVA  313 (315)
T ss_pred             CCcEEEEEee
Confidence            9999999875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6.3e-39  Score=280.62  Aligned_cols=294  Identities=28%  Similarity=0.480  Sum_probs=251.7

Q ss_pred             CccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEE
Q 004214           43 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC  122 (768)
Q Consensus        43 ~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~  122 (768)
                      ...+|+|++.|.+|++|...+|.|.++++...+.|..+.++||++.||+++. ..|++||+.++..              
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np--------------   73 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP--------------   73 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC--------------
Confidence            3457999999999999999999999999988889999999999999999886 4588888765420              


Q ss_pred             ecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCC
Q 004214          123 AIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSN  202 (768)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (768)
                                                                                                      
T Consensus        74 --------------------------------------------------------------------------------   73 (311)
T KOG0315|consen   74 --------------------------------------------------------------------------------   73 (311)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCc
Q 004214          203 QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS  282 (768)
Q Consensus       203 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~  282 (768)
                                                                                            .++..+.+|+
T Consensus        74 ----------------------------------------------------------------------~Pv~t~e~h~   83 (311)
T KOG0315|consen   74 ----------------------------------------------------------------------NPVATFEGHT   83 (311)
T ss_pred             ----------------------------------------------------------------------CceeEEeccC
Confidence                                                                                  1223566777


Q ss_pred             cceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004214          283 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD  362 (768)
Q Consensus       283 ~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  362 (768)
                      ..|+.+.  |..+++. +++|+.||+++|||++...+.+.+. |..+|+++..+|+.. -|++|..+|.|++||+.....
T Consensus        84 kNVtaVg--F~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c  158 (311)
T KOG0315|consen   84 KNVTAVG--FQCDGRW-MYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSC  158 (311)
T ss_pred             CceEEEE--EeecCeE-EEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCcc
Confidence            8888886  6666666 9999999999999999977666665 669999999999844 699999999999999985422


Q ss_pred             CCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC------ceEEEEeccCCCeEEEEEccCCCE
Q 004214          363 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL------VSVVTFRGHKRGIWSVEFSPVDQV  436 (768)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~v~~v~~s~~~~~  436 (768)
                      .         ..........|.++++.|||.+++.+...|++++|++-+.      +++..++.|.+.+..+.+||++++
T Consensus       159 ~---------~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~  229 (311)
T KOG0315|consen  159 T---------HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY  229 (311)
T ss_pred             c---------cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcE
Confidence            1         1112233467999999999999999999999999998653      566778899999999999999999


Q ss_pred             EEEeeCCCcEEEEeCCCC-ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEc
Q 004214          437 VITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVG  515 (768)
Q Consensus       437 l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s  515 (768)
                      ||+++.|.+++||+.++. +....+.+|...+..++||.||.||++|+.|+.+++|++..++.+..+.+|.....|++..
T Consensus       230 lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  230 LATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             EEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            999999999999999887 6778889999999999999999999999999999999999999999999999888887753

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=4.5e-39  Score=306.59  Aligned_cols=244  Identities=23%  Similarity=0.393  Sum_probs=222.9

Q ss_pred             eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEe
Q 004214          277 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS  356 (768)
Q Consensus       277 ~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  356 (768)
                      ++..|.++|.++.  +...|.+ |++++.||++.+||..++.....+..|..+-..+.|-.+.  -+++++.|+.|+++.
T Consensus       271 tl~~HkgPI~slK--Wnk~G~y-ilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~k  345 (524)
T KOG0273|consen  271 TLGQHKGPIFSLK--WNKKGTY-ILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCK  345 (524)
T ss_pred             hhhccCCceEEEE--EcCCCCE-EEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc--eEeecCCCceEEEEE
Confidence            5566888888886  5566665 9999999999999999999999999999987788887764  489999999999999


Q ss_pred             CCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCC--
Q 004214          357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD--  434 (768)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~--  434 (768)
                      +..          ..+..++.+|.+.|.++.|+|.|.+|++++.|++++||+.........+.+|...|..+.|+|.|  
T Consensus       346 v~~----------~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v  415 (524)
T KOG0273|consen  346 VGE----------DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPV  415 (524)
T ss_pred             ecC----------CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCc
Confidence            873          34677788899999999999999999999999999999999999999999999999999999975  


Q ss_pred             -------CEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC
Q 004214          435 -------QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED  507 (768)
Q Consensus       435 -------~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  507 (768)
                             ..+++++.|++|++||+..+.++.+|..|..+|.+++|+|+|+|+++|+.||.|.+|++++++.++.+. -.+
T Consensus       416 ~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-~~~  494 (524)
T KOG0273|consen  416 TSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-GTG  494 (524)
T ss_pred             cCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec-CCC
Confidence                   478999999999999999999999999999999999999999999999999999999999999999997 566


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          508 KIWALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       508 ~v~~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      .|..++|+.+|..|.++-.||.+++-++.
T Consensus       495 ~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  495 GIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             eEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            79999999999999999999999998764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.2e-38  Score=278.88  Aligned_cols=295  Identities=22%  Similarity=0.450  Sum_probs=249.1

Q ss_pred             CEEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe--eEEEecCccceeE
Q 004214            1 MFALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVT   78 (768)
Q Consensus         1 ~~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~--~~~~l~~h~~~V~   78 (768)
                      ++||++|-|.+|++|...+|.|.++++...+.|..+.+.||++.  ||+++.. .|++||+.++.  ++.++.+|...|+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~--LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVt   87 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKD--LAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVT   87 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcch--hhhccCC-eeEEEEccCCCCCceeEEeccCCceE
Confidence            47999999999999999999999999988899999999999887  8887754 59999998775  5899999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeC
Q 004214           79 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE  158 (768)
Q Consensus        79 ~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (768)
                      ++.|..+|++++|+|.||+++|||++...+.+.+                                              
T Consensus        88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~----------------------------------------------  121 (311)
T KOG0315|consen   88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY----------------------------------------------  121 (311)
T ss_pred             EEEEeecCeEEEecCCCceEEEEeccCcccchhc----------------------------------------------
Confidence            9999999999999999999999999763221111                                              


Q ss_pred             CcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeeccc
Q 004214          159 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY  238 (768)
Q Consensus       159 ~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~  238 (768)
                                                                                                      
T Consensus       122 --------------------------------------------------------------------------------  121 (311)
T KOG0315|consen  122 --------------------------------------------------------------------------------  121 (311)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214          239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC  318 (768)
Q Consensus       239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  318 (768)
                                                               .|..+|.++.  ..|.... |++|..+|.|++||+....
T Consensus       122 -----------------------------------------~~~spVn~vv--lhpnQte-Lis~dqsg~irvWDl~~~~  157 (311)
T KOG0315|consen  122 -----------------------------------------QHNSPVNTVV--LHPNQTE-LISGDQSGNIRVWDLGENS  157 (311)
T ss_pred             -----------------------------------------cCCCCcceEE--ecCCcce-EEeecCCCcEEEEEccCCc
Confidence                                                     1234444543  3343344 7888888888888888775


Q ss_pred             EEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEE
Q 004214          319 CVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT  397 (768)
Q Consensus       319 ~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  397 (768)
                      +...+- ....+|.++...|+|+ +++.+...|...+|++.....    .....+...+..|...+..+.+||++++||+
T Consensus       158 c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~----~s~l~P~~k~~ah~~~il~C~lSPd~k~lat  232 (311)
T KOG0315|consen  158 CTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQT----ASELEPVHKFQAHNGHILRCLLSPDVKYLAT  232 (311)
T ss_pred             cccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCc----cccceEhhheecccceEEEEEECCCCcEEEe
Confidence            555433 3456799999999987 789999999999999986432    2245566678999999999999999999999


Q ss_pred             EeCCCcEEEEeCCCC-ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEE
Q 004214          398 GSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL  473 (768)
Q Consensus       398 ~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  473 (768)
                      ++.|.+++||+.++. +....+.+|...++.++||.+|++|+||+.|+.+++|++..++.++.+.+|.....+++..
T Consensus       233 ~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  233 CSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             ecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            999999999999988 6677889999999999999999999999999999999999999999999999988888764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.1e-38  Score=292.77  Aligned_cols=331  Identities=21%  Similarity=0.311  Sum_probs=280.3

Q ss_pred             EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004214           22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW  101 (768)
Q Consensus        22 ~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vW  101 (768)
                      .++.|..|++.|.+++.+|+.+  +++||+.|..-.+|++.++.....+.+|+..|+++.||.||.+||||+-+|.|+||
T Consensus        56 S~~tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~  133 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF  133 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence            3678999999999999999544  59999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCcee
Q 004214          102 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT  181 (768)
Q Consensus       102 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~  181 (768)
                      +..++.....+.                                                                    
T Consensus       134 ~~stg~~~~~~~--------------------------------------------------------------------  145 (399)
T KOG0296|consen  134 KVSTGGEQWKLD--------------------------------------------------------------------  145 (399)
T ss_pred             EcccCceEEEee--------------------------------------------------------------------
Confidence            988764322210                                                                    


Q ss_pred             ecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCC
Q 004214          182 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI  261 (768)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~  261 (768)
                                                                                .++..                 
T Consensus       146 ----------------------------------------------------------~e~~d-----------------  150 (399)
T KOG0296|consen  146 ----------------------------------------------------------QEVED-----------------  150 (399)
T ss_pred             ----------------------------------------------------------cccCc-----------------
Confidence                                                                      01111                 


Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN  341 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  341 (768)
                                                +.|..+++...+|++|+.||.+.+|.+.++.....+.+|..++++=.|.|+|+ 
T Consensus       151 --------------------------ieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK-  203 (399)
T KOG0296|consen  151 --------------------------IEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK-  203 (399)
T ss_pred             --------------------------eEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc-
Confidence                                      11223333444599999999999999999888999999999999999999987 


Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe-eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe-
Q 004214          342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR-  419 (768)
Q Consensus       342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-  419 (768)
                      .++++..||+|++|+..++..          .... ........++.++..+..++.|..++.+++-+..+++.+.... 
T Consensus       204 r~~tgy~dgti~~Wn~ktg~p----------~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~  273 (399)
T KOG0296|consen  204 RILTGYDDGTIIVWNPKTGQP----------LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG  273 (399)
T ss_pred             eEEEEecCceEEEEecCCCce----------eEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCC
Confidence            699999999999999986532          1111 1223456788999999999999999999999999998888777 


Q ss_pred             -------ccCCCeEEEEEcc---CCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEE
Q 004214          420 -------GHKRGIWSVEFSP---VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVK  489 (768)
Q Consensus       420 -------~~~~~v~~v~~s~---~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  489 (768)
                             .+...+.|+.+.|   .-.+.|+|+-||+|.|||+...++.+.+. |..+|+++.|.+ ..+|++++.+|.|+
T Consensus       274 ~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~  351 (399)
T KOG0296|consen  274 TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVR  351 (399)
T ss_pred             CCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEE
Confidence                   3444555555554   55788999999999999998888777777 999999999998 78999999999999


Q ss_pred             EEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          490 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       490 iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      .||.++|+++.++.+|..+|.+++++|+.++++|+|.|+..+||+..
T Consensus       352 ~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  352 QWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            99999999999999999999999999999999999999999999864

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.7e-37  Score=295.92  Aligned_cols=308  Identities=25%  Similarity=0.423  Sum_probs=263.5

Q ss_pred             EEEeecCCCcEEEEECCC--CE--EEEEEE------c----CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeE
Q 004214            2 FALLEGADRKVLVWDVDG--GF--CTHYFK------G----HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV   67 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~--~~--~~~~l~------g----h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~   67 (768)
                      ++|+|+.|-..++|++..  ..  .+..|+      +    -...|++++|+.+|..  ||+|+.||.++||+. +|.++
T Consensus       193 llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~--LatG~~~G~~riw~~-~G~l~  269 (524)
T KOG0273|consen  193 LLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL--LATGSEDGEARIWNK-DGNLI  269 (524)
T ss_pred             hhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe--EEEeecCcEEEEEec-Cchhh
Confidence            578899999999999964  11  111121      2    2468999999999988  999999999999996 88889


Q ss_pred             EEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccC
Q 004214           68 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRR  147 (768)
Q Consensus        68 ~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (768)
                      .+|..|+++|.++.|+.+|.||++++.|+++.+||..++.....++.+                                
T Consensus       270 ~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~--------------------------------  317 (524)
T KOG0273|consen  270 STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH--------------------------------  317 (524)
T ss_pred             hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec--------------------------------
Confidence            999999999999999999999999999999999999877654443321                                


Q ss_pred             CcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccce
Q 004214          148 SLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM  227 (768)
Q Consensus       148 ~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~  227 (768)
                                                                                                      
T Consensus       318 --------------------------------------------------------------------------------  317 (524)
T KOG0273|consen  318 --------------------------------------------------------------------------------  317 (524)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC
Q 004214          228 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN  307 (768)
Q Consensus       228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg  307 (768)
                                                                            ..+...+.  |.. +.. +++.+.||
T Consensus       318 ------------------------------------------------------s~~~lDVd--W~~-~~~-F~ts~td~  339 (524)
T KOG0273|consen  318 ------------------------------------------------------SAPALDVD--WQS-NDE-FATSSTDG  339 (524)
T ss_pred             ------------------------------------------------------cCCccceE--Eec-Cce-EeecCCCc
Confidence                                                                  11111121  222 223 89999999


Q ss_pred             eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEE
Q 004214          308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA  387 (768)
Q Consensus       308 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  387 (768)
                      .|+++.+....++.++.+|.++|.++.|+|.+. +|++++.|+++++|++...          .....+.+|...|..+.
T Consensus       340 ~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~~----------~~~~~l~~Hskei~t~~  408 (524)
T KOG0273|consen  340 CIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQS----------NSVHDLQAHSKEIYTIK  408 (524)
T ss_pred             eEEEEEecCCCcceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCCC----------cchhhhhhhccceeeEe
Confidence            999999999999999999999999999999977 8999999999999998733          35556688999999999


Q ss_pred             EccCC---------CEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeE
Q 004214          388 VAPND---------SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK  458 (768)
Q Consensus       388 ~s~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~  458 (768)
                      |+|.|         ..+++++.|++|++||+..+.++.+|..|..+|.+++|+|+|+++|+|+.||.|.||+.++++..+
T Consensus       409 wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~  488 (524)
T KOG0273|consen  409 WSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK  488 (524)
T ss_pred             ecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence            99954         479999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214          459 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR  494 (768)
Q Consensus       459 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  494 (768)
                      .+.+ .+.|..++|+.+|.+|..+..||.+++.|++
T Consensus       489 s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  489 SYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             eecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            9984 5669999999999999999999999999875

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.3e-38  Score=291.25  Aligned_cols=290  Identities=28%  Similarity=0.474  Sum_probs=268.8

Q ss_pred             EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214          231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR  310 (768)
Q Consensus       231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~  310 (768)
                      ....+.++..+|+.+.|. |+...+++++.+++|++||..++++...+++|.+.+..+.  +...|.. +++++.|-.+.
T Consensus       100 l~~~l~g~r~~vt~v~~h-p~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~--~~a~Gk~-l~tcSsDl~~~  175 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFH-PSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDIS--FDASGKY-LATCSSDLSAK  175 (406)
T ss_pred             chhhhhccccceeeeeec-cCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEE--EecCccE-EEecCCccchh
Confidence            445677888899999986 5788999999999999999999999999999999999997  6666765 99999999999


Q ss_pred             EEeCCC-ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214          311 LWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA  389 (768)
Q Consensus       311 iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  389 (768)
                      +||..+ .+++....+|...|.+++|-|.|. ++++++.|.+|+.|++..+          ....++.+|..-|..++.+
T Consensus       176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg----------~cv~t~~~h~ewvr~v~v~  244 (406)
T KOG0295|consen  176 LWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTG----------YCVKTFPGHSEWVRMVRVN  244 (406)
T ss_pred             heeHHHHHHHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccc----------eeEEeccCchHhEEEEEec
Confidence            999987 667778889999999999999975 8999999999999999844          4778888999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccC---------------CCEEEEeeCCCcEEEEeCCCC
Q 004214          390 PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV---------------DQVVITASGDKTIKIWSISDG  454 (768)
Q Consensus       390 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~---------------~~~l~t~~~d~~i~iwd~~~~  454 (768)
                      .||.++|+++.|.++++|-+.++.+...++.|..+|.|++|.|.               ++++.+++.|++|++||+.+|
T Consensus       245 ~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg  324 (406)
T KOG0295|consen  245 QDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG  324 (406)
T ss_pred             CCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence            99999999999999999999999999999999999999999873               259999999999999999999


Q ss_pred             ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214          455 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  534 (768)
Q Consensus       455 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~  534 (768)
                      .|+.++.+|...|..++|+|.|+||+++.+|+++++||+++++|..++..|+.-|++++|+.+..+++||+-|..+++|.
T Consensus       325 ~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  325 MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             c
Q 004214          535 D  535 (768)
Q Consensus       535 ~  535 (768)
                      .
T Consensus       405 c  405 (406)
T KOG0295|consen  405 C  405 (406)
T ss_pred             c
Confidence            4

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.2e-38  Score=289.46  Aligned_cols=291  Identities=28%  Similarity=0.538  Sum_probs=261.5

Q ss_pred             EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004214           22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW  101 (768)
Q Consensus        22 ~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vW  101 (768)
                      ..+.+.||..+|+.+-|+|+  ..++++++.|++|++||..+|++...|+||...|..++|+..|++|++++.|-.+++|
T Consensus       100 l~~~l~g~r~~vt~v~~hp~--~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW  177 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPS--EALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW  177 (406)
T ss_pred             chhhhhccccceeeeeeccC--ceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence            46778899999999999995  4559999999999999999999999999999999999999999999999999888899


Q ss_pred             ECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCcee
Q 004214          102 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT  181 (768)
Q Consensus       102 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~  181 (768)
                      |..+.                                                                           
T Consensus       178 d~~~~---------------------------------------------------------------------------  182 (406)
T KOG0295|consen  178 DFDTF---------------------------------------------------------------------------  182 (406)
T ss_pred             eHHHH---------------------------------------------------------------------------
Confidence            87541                                                                           


Q ss_pred             ecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCC
Q 004214          182 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI  261 (768)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~  261 (768)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (406)
T KOG0295|consen  183 --------------------------------------------------------------------------------  182 (406)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN  341 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  341 (768)
                                .++++.+.+|...|.++.  +.|.+.. +++++.|.+|+.|++.++-++.++.+|..-|..+..+.||. 
T Consensus       183 ----------~~c~ks~~gh~h~vS~V~--f~P~gd~-ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt-  248 (406)
T KOG0295|consen  183 ----------FRCIKSLIGHEHGVSSVF--FLPLGDH-ILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT-  248 (406)
T ss_pred             ----------HHHHHHhcCcccceeeEE--EEecCCe-eeecccccceeEEecccceeEEeccCchHhEEEEEecCCee-
Confidence                      112234556777777776  6777765 99999999999999999999999999999999999999976 


Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC---------------CCEEEEEeCCCcEEE
Q 004214          342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN---------------DSLVCTGSQDRTACV  406 (768)
Q Consensus       342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---------------~~~l~~~~~dg~i~i  406 (768)
                      ++++++.|.++++|-+...          .....+..|..+|.+++|.|.               +.++++++.|++|++
T Consensus       249 i~As~s~dqtl~vW~~~t~----------~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~  318 (406)
T KOG0295|consen  249 IIASCSNDQTLRVWVVATK----------QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI  318 (406)
T ss_pred             EEEecCCCceEEEEEeccc----------hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE
Confidence            8999999999999988743          355667789999999998762               258999999999999


Q ss_pred             EeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCC
Q 004214          407 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG  486 (768)
Q Consensus       407 ~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  486 (768)
                      ||+.++.++.++.+|...|..++|+|.|++|+++..|+++++||+++++|++++..|...++++.|..+..++++|+-|.
T Consensus       319 wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdq  398 (406)
T KOG0295|consen  319 WDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQ  398 (406)
T ss_pred             EeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEC
Q 004214          487 LVKLWTV  493 (768)
Q Consensus       487 ~i~iwd~  493 (768)
                      ++++|.-
T Consensus       399 t~KvwEc  405 (406)
T KOG0295|consen  399 TVKVWEC  405 (406)
T ss_pred             eeeeeec
Confidence            9999964

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.1e-37  Score=314.94  Aligned_cols=247  Identities=30%  Similarity=0.532  Sum_probs=220.5

Q ss_pred             EEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEE
Q 004214          264 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL  343 (768)
Q Consensus       264 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  343 (768)
                      +.+.|..+....+.+.+|.++|....  ++|+.+. |++++.|+++|+|.+.+..++..+++|..||+.+.|+|.|- ++
T Consensus       433 ~~~~D~~~~~~~~~L~GH~GPVyg~s--FsPd~rf-LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~Gy-YF  508 (707)
T KOG0263|consen  433 VDMLDDDSSGTSRTLYGHSGPVYGCS--FSPDRRF-LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGY-YF  508 (707)
T ss_pred             hhhccccCCceeEEeecCCCceeeee--ecccccc-eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCce-EE
Confidence            44455556666667999999999997  7777665 99999999999999999999999999999999999999955 89


Q ss_pred             EEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCC
Q 004214          344 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR  423 (768)
Q Consensus       344 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  423 (768)
                      ++++.|++-++|...          ...+.+.+.+|-.+|.|+.|+|+..++++|+.|.+|++||+.+|..++.|.||.+
T Consensus       509 atas~D~tArLWs~d----------~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~  578 (707)
T KOG0263|consen  509 ATASHDQTARLWSTD----------HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG  578 (707)
T ss_pred             EecCCCceeeeeecc----------cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC
Confidence            999999999999987          4457888899999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe------
Q 004214          424 GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE------  497 (768)
Q Consensus       424 ~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~------  497 (768)
                      +|++++|||+|++|++|+.||.|.+||+.+++++..+.+|.+.|.++.|+.+|..|++|+.|.+|++||+..-.      
T Consensus       579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~  658 (707)
T KOG0263|consen  579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLG  658 (707)
T ss_pred             ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999985321      


Q ss_pred             ------------------EEEEeccCCCcEEEEEEcCCCCEEEEE
Q 004214          498 ------------------CIATYDKHEDKIWALAVGKKTEMFATG  524 (768)
Q Consensus       498 ------------------~~~~~~~~~~~v~~l~~s~~~~~l~s~  524 (768)
                                        ++.++..-..+|.++.|..-.-.|++|
T Consensus       659 ~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  659 HISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             ccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence                              445555566778888887665444444

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=2e-35  Score=300.65  Aligned_cols=443  Identities=19%  Similarity=0.312  Sum_probs=345.0

Q ss_pred             EEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEE
Q 004214            3 ALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAI   82 (768)
Q Consensus         3 latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~f   82 (768)
                      ++.|+.+|.+.+||+.+++.+++++++...||++.-+|-=+  ++|.|..+|+|.|+|+..++.+.+|+...++|++++|
T Consensus       175 IvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLD--VVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSF  252 (910)
T KOG1539|consen  175 IVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALD--VVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSF  252 (910)
T ss_pred             EEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcce--EEEEeccCceEEEEEcccCcEEEEEEccccceeEEEe
Confidence            67899999999999999999999999999999999999544  5999999999999999999999999955699999999


Q ss_pred             cCCCCEE-EEEeCCCeEEEEECCCCeeeeeee--cceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCC
Q 004214           83 TSDGSTL-ISAGRDKVVNLWDLRDYSCKLTVP--TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER  159 (768)
Q Consensus        83 s~d~~~L-~s~~~dg~i~vWd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (768)
                      ..||+.+ ++++..|.+.+||++..+.+....  +...+....|.|...                       .+++.+.|
T Consensus       253 rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-----------------------Vl~ta~~D  309 (910)
T KOG1539|consen  253 RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-----------------------VLVTAGAD  309 (910)
T ss_pred             ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc-----------------------eEeeccCC
Confidence            9999865 555666999999999988776654  234566666666554                       78999999


Q ss_pred             cEEEEEEcCCc----eeeeecCCceeecccccCcccceeEEEEc-cCCCceEEEEecCeEEEEeeccCcccc-eee----
Q 004214          160 GIVRMWNADSA----CLYEQKSSDVTISFEMDDSKRGFTAATVL-PSNQGLLCVTADQQLLLYTTVEVPEKK-MEL----  229 (768)
Q Consensus       160 g~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~~~~~~~~~~~~-~~~----  229 (768)
                      ..+++|-.+++    .+.+.+.          .+.....++.|. ..+..++.+..|+.++.+++....... ...    
T Consensus       310 nSlk~~vfD~~dg~pR~LR~R~----------GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~  379 (910)
T KOG1539|consen  310 NSLKVWVFDSGDGVPRLLRSRG----------GHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNK  379 (910)
T ss_pred             CceeEEEeeCCCCcchheeecc----------CCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccc
Confidence            99999877655    2222221          222344555555 556667888889988888765543211 000    


Q ss_pred             EEEe------eecccCCceeEEEEec----CCCCEEEEEeCCCcEEEEECCCceee-eeeeCCc----cceEEEeeeeec
Q 004214          230 ILSK------RLVGYNEEILDLKFLG----EEEQYLAVATNIEQVQVYDLSSMSCS-YVLAGHS----EIVLCLDTCALS  294 (768)
Q Consensus       230 ~~~~------~~~~~~~~i~~~~~~~----~~~~~l~~~~~~~~i~i~d~~~~~~~-~~~~~~~----~~v~~l~~~~~~  294 (768)
                      ...+      ...-.-.+|..+++..    .-.+.+++.-++...+.|+......- ..+. +.    ..+.+.+.|..+
T Consensus       380 ~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~-~~~~~~~~~~~~av~vs~  458 (910)
T KOG1539|consen  380 KRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLD-PKRFKKDDINATAVCVSF  458 (910)
T ss_pred             cccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEec-CccccccCcceEEEEEec
Confidence            0000      1111234566666643    23467777778889999999876652 2232 22    333444444666


Q ss_pred             CCCEEEEEEeCCCeEEEEeCCCceEEEee---ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccc
Q 004214          295 SGKILIVTGSKDNSVRLWDSESRCCVGVG---TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK  371 (768)
Q Consensus       295 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  371 (768)
                      .|+. .+.|...|.|-+|++++|-....+   ..|.++|+.++...-++ .+++++.+|.+++||+....          
T Consensus       459 CGNF-~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k~----------  526 (910)
T KOG1539|consen  459 CGNF-VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDFKKKV----------  526 (910)
T ss_pred             cCce-EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEecCCcc----------
Confidence            6665 889999999999999999888888   58999999999988755 79999999999999997432          


Q ss_pred             eeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214          372 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI  451 (768)
Q Consensus       372 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~  451 (768)
                      . .....-...++++..+....+++.+..|-.|.++|..+.+.++.+.||...|++++|||||++|++++.|++|++||+
T Consensus       527 l-~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl  605 (910)
T KOG1539|consen  527 L-KKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL  605 (910)
T ss_pred             e-eeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence            1 111223456788888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCC-CcEEEEECCC
Q 004214          452 SDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-GLVKLWTVRT  495 (768)
Q Consensus       452 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g~i~iwd~~~  495 (768)
                      .++.++-.+. -..+.+.+.|+|+|.+||++..| .-|++|.-++
T Consensus       606 pt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  606 PTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             cCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence            9999998886 67889999999999999999998 4799996443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.1e-37  Score=316.97  Aligned_cols=274  Identities=27%  Similarity=0.474  Sum_probs=241.1

Q ss_pred             CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214          239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC  318 (768)
Q Consensus       239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  318 (768)
                      ...+.|..|+ ++..++|.|..|..|++|.+...+.. .++... .+           . .+=+++.|-.+.+.|..+..
T Consensus       378 ~~~v~ca~fS-ddssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~~~-~l-----------~-~~d~~sad~~~~~~D~~~~~  442 (707)
T KOG0263|consen  378 YQGVTCAEFS-DDSSMLACGFVDSSVRVWSLTPKKLK-KLKDAS-DL-----------S-NIDTESADVDVDMLDDDSSG  442 (707)
T ss_pred             CCcceeEeec-CCcchhhccccccEEEEEecchhhhc-cccchh-hh-----------c-cccccccchhhhhccccCCc
Confidence            4456666666 56679999999999999998765322 222111 00           0 13334445557777887777


Q ss_pred             EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE
Q 004214          319 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG  398 (768)
Q Consensus       319 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  398 (768)
                      ....+.+|.++|..+.|+|+ .++|++++.|+++++|.+.          .........+|..+|..+.|+|.|-++|++
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd-~rfLlScSED~svRLWsl~----------t~s~~V~y~GH~~PVwdV~F~P~GyYFata  511 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPD-RRFLLSCSEDSSVRLWSLD----------TWSCLVIYKGHLAPVWDVQFAPRGYYFATA  511 (707)
T ss_pred             eeEEeecCCCceeeeeeccc-ccceeeccCCcceeeeecc----------cceeEEEecCCCcceeeEEecCCceEEEec
Confidence            78889999999999999999 4599999999999999998          455777788999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCE
Q 004214          399 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ  478 (768)
Q Consensus       399 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  478 (768)
                      +.|++.++|......+.+.+.+|-..|.|+.|+|+..++++||.|.+||+||+.+|..++.|.||.++|++++|||+|++
T Consensus       512 s~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~  591 (707)
T KOG0263|consen  512 SHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRY  591 (707)
T ss_pred             CCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          479 IVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       479 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      |++|+.||.|++||+.+++.+..+.+|.+.|.++.||.+|..||+||.|..|++||+...
T Consensus       592 LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  592 LASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            999999999999999999999999999999999999999999999999999999998654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5e-38  Score=294.12  Aligned_cols=286  Identities=24%  Similarity=0.433  Sum_probs=256.1

Q ss_pred             cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc
Q 004214          238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR  317 (768)
Q Consensus       238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  317 (768)
                      ....|..+.|.| +++.|++|+..|.+.+|+..+......++.|..+|.++.  +++++.. +++|+.+|.|++|+..-.
T Consensus        95 vkc~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~--ws~~g~w-miSgD~gG~iKyWqpnmn  170 (464)
T KOG0284|consen   95 VKCPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMK--WSHNGTW-MISGDKGGMIKYWQPNMN  170 (464)
T ss_pred             cccceeeEEEcC-CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEE--EccCCCE-EEEcCCCceEEecccchh
Confidence            355788899985 788999999999999999988877778899999999998  7777776 999999999999998766


Q ss_pred             eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEE
Q 004214          318 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT  397 (768)
Q Consensus       318 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  397 (768)
                      ........|...|++++|+|+.. .|++++.||+|+|||....          +....+.+|.-.|.+++|+|...++++
T Consensus       171 nVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~----------kee~vL~GHgwdVksvdWHP~kgLias  239 (464)
T KOG0284|consen  171 NVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMP----------KEERVLRGHGWDVKSVDWHPTKGLIAS  239 (464)
T ss_pred             hhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCC----------chhheeccCCCCcceeccCCccceeEE
Confidence            54444445669999999999755 7999999999999998743          355566899999999999999999999


Q ss_pred             EeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEe-CC
Q 004214          398 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT-RG  476 (768)
Q Consensus       398 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~  476 (768)
                      |+.|..|++||.+++.++.++.+|...|..+.|+|++++|+++|.|..+++||+++-+.+.++++|...|+++.|+| ..
T Consensus       240 gskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~  319 (464)
T KOG0284|consen  240 GSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNE  319 (464)
T ss_pred             ccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 45


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          477 AQIVSCGADGLVKLWTVRTGECIATY-DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       477 ~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      ..|.+|+.||.|..|.+...+++..+ .+|...||+|+|+|-|..|++|+.|.++++|....+
T Consensus       320 ~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  320 SLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP  382 (464)
T ss_pred             cceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence            68889999999999999866666655 479999999999999999999999999999986543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.3e-35  Score=296.03  Aligned_cols=482  Identities=21%  Similarity=0.282  Sum_probs=338.6

Q ss_pred             EEEeec--CCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeC--CCcEEEEECCCCeeEEEecCcccee
Q 004214            2 FALLEG--ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD--DATVRVWDLLAKKCVATLDKHFSRV   77 (768)
Q Consensus         2 ~latg~--~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~--dg~I~iWd~~~~~~~~~l~~h~~~V   77 (768)
                      |+|+|-  ....++||++.....+..|..|+-.|+|++|+|.+++  +++.+.  |-.|.+||+........-+ -.+.|
T Consensus        92 yvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~ky--vvSVGsQHDMIVnv~dWr~N~~~asnk-iss~V  168 (1080)
T KOG1408|consen   92 YVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKY--VVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVV  168 (1080)
T ss_pred             EEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcE--EEeeccccceEEEhhhhhhcccccccc-cceeE
Confidence            788875  6778999999998899999999999999999999887  665544  5678899986554443322 45679


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeee-eeec--------------------------------ce--------
Q 004214           78 TSMAITSDGSTLISAGRDKVVNLWDLRDYSCKL-TVPT--------------------------------YE--------  116 (768)
Q Consensus        78 ~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~-~~~~--------------------------------~~--------  116 (768)
                      ..++|+.||.|++|++. .+|++|.++.++... .+|.                                ..        
T Consensus       169 sav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFS  247 (1080)
T KOG1408|consen  169 SAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFS  247 (1080)
T ss_pred             EEEEEccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeec
Confidence            99999999999999985 679999986654110 0000                                00        


Q ss_pred             --------------eEeeEEec-----------------CCCCCccccc------ccc----ch--------------hh
Q 004214          117 --------------MVEAVCAI-----------------PPGSAFDSFL------SSY----NQ--------------QT  141 (768)
Q Consensus       117 --------------~v~~~~~~-----------------~~~~~~~~~~------~~~----~~--------------~~  141 (768)
                                    ...+++.+                 |..-.++..+      +..    .+              ..
T Consensus       248 sRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~  327 (1080)
T KOG1408|consen  248 SRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDA  327 (1080)
T ss_pred             hhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCce
Confidence                          00111111                 1110111000      000    00              00


Q ss_pred             hhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCce-----eecccccC-cccceeEEEEccCCCceEEEEecCeEE
Q 004214          142 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV-----TISFEMDD-SKRGFTAATVLPSNQGLLCVTADQQLL  215 (768)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~  215 (768)
                      ...........+.+.-.|..+++||++.-..........     ......-. ....... +.. ....+++.+.|++|+
T Consensus       328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~-acl-p~~cF~TCSsD~TIR  405 (1080)
T KOG1408|consen  328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTA-ACL-PRGCFTTCSSDGTIR  405 (1080)
T ss_pred             eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCccc-ccC-CccceeEecCCCcEE
Confidence            011112234567788889999999997762221111100     00000000 0000011 111 233488999999999


Q ss_pred             EEeeccCcccce-----------eeE-------------------EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004214          216 LYTTVEVPEKKM-----------ELI-------------------LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ  265 (768)
Q Consensus       216 ~~~~~~~~~~~~-----------~~~-------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~  265 (768)
                      +|++........           ..+                   .....-+....+.+++.+ +++++||.|...|.++
T Consensus       406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS-p~gqhLAsGDr~Gnlr  484 (1080)
T KOG1408|consen  406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS-PDGQHLASGDRGGNLR  484 (1080)
T ss_pred             EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC-CCcceecccCccCceE
Confidence            999887321111           000                   000111223456777776 5899999999999999


Q ss_pred             EEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-ceEEEeeecccCcEEEEEEecCC-CcEE
Q 004214          266 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKL-QNFL  343 (768)
Q Consensus       266 i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~l  343 (768)
                      +|++...+....+..|...|.|+.+.+-.-+..+|++++.|..|++||... -.++.++.+|...|+++.|.-.| +..+
T Consensus       485 Vy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~M  564 (1080)
T KOG1408|consen  485 VYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKM  564 (1080)
T ss_pred             EEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEE
Confidence            999999999999999999999998555455667899999999999999864 45677889999999999998765 3458


Q ss_pred             EEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec---
Q 004214          344 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---  420 (768)
Q Consensus       344 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---  420 (768)
                      ++++.|..|.+--.......     ..-...........+..+++.|+.+++++++.|..|+||++.+++....|++   
T Consensus       565 iscGADksimFr~~qk~~~g-----~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~  639 (1080)
T KOG1408|consen  565 ISCGADKSIMFRVNQKASSG-----RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD  639 (1080)
T ss_pred             EeccCchhhheehhccccCc-----eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccccc
Confidence            89999988765433211110     0111111122235688999999999999999999999999999999999986   


Q ss_pred             cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214          421 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       421 ~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  495 (768)
                      |.+....+...|.|.++++.+.|+++.++|..+|+|+.+..||...|+.+.|++|-+.|++.+.||.|.||.+..
T Consensus       640 ~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  640 HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            666778899999999999999999999999999999999999999999999999999999999999999999864

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.4e-36  Score=277.83  Aligned_cols=289  Identities=26%  Similarity=0.490  Sum_probs=255.7

Q ss_pred             EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004214           22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW  101 (768)
Q Consensus        22 ~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vW  101 (768)
                      ..+.++||.+.|.|+++.|-..+  +++|+.|++|+|||+.+|++..++.||-..|..+++|+--.||++++.|+.|+.|
T Consensus       143 l~rVi~gHlgWVr~vavdP~n~w--f~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAVDPGNEW--FATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW  220 (460)
T ss_pred             ehhhhhhccceEEEEeeCCCcee--EEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence            45678899999999999997666  9999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCcee
Q 004214          102 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT  181 (768)
Q Consensus       102 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~  181 (768)
                      |++..+                                                                          
T Consensus       221 DLe~nk--------------------------------------------------------------------------  226 (460)
T KOG0285|consen  221 DLEYNK--------------------------------------------------------------------------  226 (460)
T ss_pred             echhhh--------------------------------------------------------------------------
Confidence            886543                                                                          


Q ss_pred             ecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCC
Q 004214          182 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI  261 (768)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~  261 (768)
                                                                                                      
T Consensus       227 --------------------------------------------------------------------------------  226 (460)
T KOG0285|consen  227 --------------------------------------------------------------------------------  226 (460)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN  341 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  341 (768)
                                  .++.+.||-+.|+|++  ..|.... |++|+.|.++++||+++...+..+.+|..+|..+.+.|..+ 
T Consensus       227 ------------vIR~YhGHlS~V~~L~--lhPTldv-l~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp-  290 (460)
T KOG0285|consen  227 ------------VIRHYHGHLSGVYCLD--LHPTLDV-LVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP-  290 (460)
T ss_pred             ------------hHHHhccccceeEEEe--cccccee-EEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC-
Confidence                        2234567888888887  5565555 99999999999999999999999999999999999998766 


Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEecc
Q 004214          342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH  421 (768)
Q Consensus       342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  421 (768)
                      .+++|+.|++|++||+..          .+.......|...+.+++.+|....+|+++.| .|+-|++..+..+..+.+|
T Consensus       291 qvit~S~D~tvrlWDl~a----------gkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh  359 (460)
T KOG0285|consen  291 QVITGSHDSTVRLWDLRA----------GKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGH  359 (460)
T ss_pred             ceEEecCCceEEEeeecc----------CceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccc
Confidence            599999999999999984          44677788899999999999999999999887 5999999999999999999


Q ss_pred             CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee--------cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214          422 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE--------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       422 ~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  493 (768)
                      ..-|.+++...|| ++++|+.+|.+.+||.++|-..+.+.        .....|.+.+|...|..|++|..|.+|++|.-
T Consensus       360 ~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke  438 (460)
T KOG0285|consen  360 NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE  438 (460)
T ss_pred             cceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence            9999999998765 67889999999999999987665552        13457899999999999999999999999964


Q ss_pred             C
Q 004214          494 R  494 (768)
Q Consensus       494 ~  494 (768)
                      +
T Consensus       439 D  439 (460)
T KOG0285|consen  439 D  439 (460)
T ss_pred             c
Confidence            3

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=2.7e-34  Score=286.68  Aligned_cols=494  Identities=18%  Similarity=0.291  Sum_probs=355.8

Q ss_pred             EEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCC-ccEEEEEeCCCcEEEEECCCC--eeEEEecCccceeEE
Q 004214            3 ALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTD-KSLLFSGSDDATVRVWDLLAK--KCVATLDKHFSRVTS   79 (768)
Q Consensus         3 latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~-~~~l~sg~~dg~I~iWd~~~~--~~~~~l~~h~~~V~~   79 (768)
                      +++.|+...|.+||......+..+.||.++|+|+.|-|+.+ ...+++|+.|+.|++|.+...  .++.++.+|...+.|
T Consensus        27 ~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~c  106 (764)
T KOG1063|consen   27 LVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVC  106 (764)
T ss_pred             eEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEE
Confidence            56678899999999999988999999999999999998766 124999999999999999733  456677776665555


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCe--eeeeeec--ce-eEeeEEecCCCCCccccccccchhhhhcccCCcceEEE
Q 004214           80 MAITSDGSTLISAGRDKVVNLWDLRDYS--CKLTVPT--YE-MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI  154 (768)
Q Consensus        80 l~fs~d~~~L~s~~~dg~i~vWd~~~~~--~~~~~~~--~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (768)
                      +  ........+...|+.+.+||.+..+  +...+..  .. ...++++.++.                     ....++
T Consensus       107 v--~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~---------------------~~~lla  163 (764)
T KOG1063|consen  107 V--VARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNN---------------------KTFLLA  163 (764)
T ss_pred             E--EeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccC---------------------CcEEEE
Confidence            4  4333333334789999999995544  2212211  11 11223333311                     223566


Q ss_pred             EeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCC---ceEEEEecCeEEEEeeccCcccc-----
Q 004214          155 TVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQ---GLLCVTADQQLLLYTTVEVPEKK-----  226 (768)
Q Consensus       155 ~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~dg~i~~~~~~~~~~~~-----  226 (768)
                      .++.+..|.++.-...+..        .-.....+.+-+..+.|...+.   .+++++.|..|++|.+.......     
T Consensus       164 ~Ggs~~~v~~~s~~~d~f~--------~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e  235 (764)
T KOG1063|consen  164 CGGSKFVVDLYSSSADSFA--------RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERE  235 (764)
T ss_pred             ecCcceEEEEeccCCccee--------EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccc
Confidence            7777777877765533111        1112223334444444443333   45667789999999877655111     


Q ss_pred             ------------eee-------EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeee----e---eeC
Q 004214          227 ------------MEL-------ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY----V---LAG  280 (768)
Q Consensus       227 ------------~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~----~---~~~  280 (768)
                                  +..       .....+.||.+.|.++.|.+ ....|++++.|.++.+|...+..-+.    .   ..+
T Consensus       236 ~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg  314 (764)
T KOG1063|consen  236 DSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGG  314 (764)
T ss_pred             cccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-chhhheecccCcceEEEecCCccceEEEEEEeecccc
Confidence                        011       01123459999999999986 44678889999999999887653221    1   222


Q ss_pred             CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC---ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeC
Q 004214          281 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES---RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF  357 (768)
Q Consensus       281 ~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  357 (768)
                      .........  +++++. .+++-+..|..++|....   -.....+.||.+.|+.++|.|.|. ++++.+.|-+-++|--
T Consensus       315 ~a~GF~g~l--w~~n~~-~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~  390 (764)
T KOG1063|consen  315 SAGGFWGGL--WSPNSN-VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFAR  390 (764)
T ss_pred             cccceeeEE--EcCCCC-EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeecc
Confidence            233344443  556655 488889999999998333   234456789999999999999987 8999999999999865


Q ss_pred             CCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC--------------------------
Q 004214          358 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD--------------------------  411 (768)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~--------------------------  411 (768)
                      -+.+      .........+-|+.+++|+++-+....+++|.....+++|+.+.                          
T Consensus       391 wg~q------~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~V  464 (764)
T KOG1063|consen  391 WGRQ------QEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANV  464 (764)
T ss_pred             cccc------cceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccc
Confidence            4211      12455566677999999999998777888888889999997531                          


Q ss_pred             -----------------Cc---------------------------------eEEEEeccCCCeEEEEEccCCCEEEEee
Q 004214          412 -----------------LV---------------------------------SVVTFRGHKRGIWSVEFSPVDQVVITAS  441 (768)
Q Consensus       412 -----------------~~---------------------------------~~~~~~~~~~~v~~v~~s~~~~~l~t~~  441 (768)
                                       |.                                 .+..+.||...|.+++.+|+++++|+++
T Consensus       465 paLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaC  544 (764)
T KOG1063|consen  465 PALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASAC  544 (764)
T ss_pred             ccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehh
Confidence                             00                                 0112237888999999999999999998


Q ss_pred             CCC-----cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeE----EEEeccCCCcEEEE
Q 004214          442 GDK-----TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC----IATYDKHEDKIWAL  512 (768)
Q Consensus       442 ~d~-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l  512 (768)
                      ...     .|++|+..+...++.+.+|.-.|+.++|||||++|++.+.|+++.+|....+..    ....+.|..-||+.
T Consensus       545 KS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdc  624 (764)
T KOG1063|consen  545 KSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDC  624 (764)
T ss_pred             hhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEc
Confidence            643     599999999999999999999999999999999999999999999998764421    23367899999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          513 AVGKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       513 ~~s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      .|+|++.+++|+|.|..|.+|.....
T Consensus       625 sW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  625 SWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             ccCcccceeEEecCCceEEEEeccCc
Confidence            99999999999999999999998765

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-34  Score=283.93  Aligned_cols=412  Identities=19%  Similarity=0.341  Sum_probs=315.8

Q ss_pred             EEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004214           24 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL  103 (768)
Q Consensus        24 ~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~  103 (768)
                      +++..|...|.++.|||...+  ++++-..|.|.|||.++...+..+.-..-+|.+..|-+-.+++++|+.|..|+|++.
T Consensus         7 rk~~~rSdRVKsVd~HPtePw--~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPW--ILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             hHhhccCCceeeeecCCCCce--EEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence            345569999999999997555  888899999999999999999999988899999999999999999999999999999


Q ss_pred             CCCeeeeeeecce-eEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214          104 RDYSCKLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI  182 (768)
Q Consensus       104 ~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~  182 (768)
                      .+++.+..+..+. .+.+++..|..+                       +++++++|-.|++|+.+.+            
T Consensus        85 nt~ekV~~FeAH~DyIR~iavHPt~P-----------------------~vLtsSDDm~iKlW~we~~------------  129 (794)
T KOG0276|consen   85 NTGEKVKTFEAHSDYIRSIAVHPTLP-----------------------YVLTSSDDMTIKLWDWENE------------  129 (794)
T ss_pred             ccceeeEEeeccccceeeeeecCCCC-----------------------eEEecCCccEEEEeeccCc------------
Confidence            9999999997665 488888888765                       8999999999999998765            


Q ss_pred             cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214          183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE  262 (768)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~  262 (768)
                                                                    ......+.||..-|.+++|.|.+.+.+|+++-|+
T Consensus       130 ----------------------------------------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr  163 (794)
T KOG0276|consen  130 ----------------------------------------------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR  163 (794)
T ss_pred             ----------------------------------------------eeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence                                                          2234567789999999999999999999999999


Q ss_pred             cEEEEECCCceeeeeeeCCccceEEEeeeeecC-CCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc
Q 004214          263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN  341 (768)
Q Consensus       263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  341 (768)
                      +|++|.+.+..+..++.+|...|.|++  +.+. ++.++++|+.|.+|++||.++..|++++.+|...|..++|+|.-+ 
T Consensus       164 TVKVWslgs~~~nfTl~gHekGVN~Vd--yy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp-  240 (794)
T KOG0276|consen  164 TVKVWSLGSPHPNFTLEGHEKGVNCVD--YYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP-  240 (794)
T ss_pred             cEEEEEcCCCCCceeeeccccCcceEE--eccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc-
Confidence            999999999999999999999999998  4443 345699999999999999999999999999999999999999966 


Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe--
Q 004214          342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR--  419 (768)
Q Consensus       342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--  419 (768)
                      ++++|+.||++++|+-.+.          +....+.-....+.|++-.+.++.+++|...|.|.+= +-..++..++.  
T Consensus       241 iiisgsEDGTvriWhs~Ty----------~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~-lgreeP~vsMd~~  309 (794)
T KOG0276|consen  241 IIISGSEDGTVRIWNSKTY----------KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVK-LGREEPAVSMDSN  309 (794)
T ss_pred             EEEEecCCccEEEecCcce----------ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEE-ccCCCCceeecCC
Confidence            8999999999999987643          2233333345678888888888888888877765442 21111111110  


Q ss_pred             ------cc---------------------------------CCCeEEEEEccCCCEEEEeeCCCcEEEEeCC------CC
Q 004214          420 ------GH---------------------------------KRGIWSVEFSPVDQVVITASGDKTIKIWSIS------DG  454 (768)
Q Consensus       420 ------~~---------------------------------~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~------~~  454 (768)
                            .|                                 .-....++-+|+|++++++ .||.-.||..-      .|
T Consensus       310 gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vc-gdGEyiIyTala~RnK~fG  388 (794)
T KOG0276|consen  310 GKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVC-GDGEYIIYTALALRNKAFG  388 (794)
T ss_pred             ccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEe-cCccEEEEEeeehhhcccc
Confidence                  00                                 0112346678888877666 45777776521      11


Q ss_pred             cee--------------------EEe---ecCCCcEEEEEEE---eCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCc
Q 004214          455 SCL--------------------KTF---EGHTSSVLRASFL---TRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK  508 (768)
Q Consensus       455 ~~~--------------------~~~---~~~~~~v~~~~~s---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  508 (768)
                      +.+                    ..+   +.|..  .+..++   --|..|+....++.+++||..+++.++++....  
T Consensus       389 ~~~eFvw~~dsne~avRes~~~vki~knfke~ks--i~~~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~~--  464 (794)
T KOG0276|consen  389 SGLEFVWAADSNEFAVRESNGNVKIFKNFKEHKS--IRPDMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVTS--  464 (794)
T ss_pred             cceeEEEcCCCCeEEEEecCCceEEEecceeccc--cccccceeeecCCceEEEEeCCeEEEEEcccceEEEEEeecc--
Confidence            111                    111   11110  001111   113345555556779999999999999987443  


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCCHH
Q 004214          509 IWALAVGKKTEMFATGGSDALVNLWHDSTAA  539 (768)
Q Consensus       509 v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~  539 (768)
                       -.+.|+.+|.+++.++.|. .++...+...
T Consensus       465 -k~v~w~d~g~lVai~~d~S-fyil~~n~d~  493 (794)
T KOG0276|consen  465 -KHVYWSDNGELVAIAGDDS-FYILKFNADA  493 (794)
T ss_pred             -ceeEEecCCCEEEEEecCc-eeEEEecHHH
Confidence             3578999999888888665 5666665543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.5e-37  Score=283.03  Aligned_cols=276  Identities=28%  Similarity=0.560  Sum_probs=248.3

Q ss_pred             CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214          239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC  318 (768)
Q Consensus       239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  318 (768)
                      ...|.|+.|   ++..+++|..|++|.+||..+..+.+.+.||++.|.|+.+     +..++++|+.|.+|++||.++++
T Consensus       197 skgVYClQY---DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy-----d~rviisGSSDsTvrvWDv~tge  268 (499)
T KOG0281|consen  197 SKGVYCLQY---DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY-----DERVIVSGSSDSTVRVWDVNTGE  268 (499)
T ss_pred             CCceEEEEe---cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec-----cceEEEecCCCceEEEEeccCCc
Confidence            456788887   6678999999999999999999999999999999999972     22369999999999999999999


Q ss_pred             EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE
Q 004214          319 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG  398 (768)
Q Consensus       319 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  398 (768)
                      ++.++-+|...|..+.|+..   ++++++.|.++.+||+....       .......+.+|...|+.+.|+  .++++++
T Consensus       269 ~l~tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps-------~it~rrVLvGHrAaVNvVdfd--~kyIVsA  336 (499)
T KOG0281|consen  269 PLNTLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPT-------DITLRRVLVGHRAAVNVVDFD--DKYIVSA  336 (499)
T ss_pred             hhhHHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCch-------HHHHHHHHhhhhhheeeeccc--cceEEEe
Confidence            99999999999999999865   89999999999999998543       344666778999999999986  5699999


Q ss_pred             eCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCE
Q 004214          399 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ  478 (768)
Q Consensus       399 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  478 (768)
                      +.|.+|++|++.+++.+.++.+|..+|.|+.+.  |+++++|+.|.+|++||+..|.|++.++||..-|.++.|.  .+.
T Consensus       337 SgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~kr  412 (499)
T KOG0281|consen  337 SGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKR  412 (499)
T ss_pred             cCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cce
Confidence            999999999999999999999999999999886  9999999999999999999999999999999999999995  568


Q ss_pred             EEEEeCCCcEEEEECCCCe---------EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214          479 IVSCGADGLVKLWTVRTGE---------CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE  540 (768)
Q Consensus       479 l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~  540 (768)
                      +++|+.||+|+|||+.++.         |+.++..|.+.|..+.|  |...+++++.|.+|.|||+..+..
T Consensus       413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence            9999999999999998764         55666779999999999  677899999999999999876543

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.9e-35  Score=264.27  Aligned_cols=287  Identities=23%  Similarity=0.395  Sum_probs=257.2

Q ss_pred             EeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEEC-CCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214          232 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL-SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR  310 (768)
Q Consensus       232 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~  310 (768)
                      ...+.+|.+.|..+.|.| ++..||+|+.|..|.+|+. ...+....+.+|.+.|..+.  +..++.. +++++.|.+++
T Consensus        40 ~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~--~~~d~s~-i~S~gtDk~v~  115 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELH--GMRDGSH-ILSCGTDKTVR  115 (338)
T ss_pred             hhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeee--eccCCCE-EEEecCCceEE
Confidence            356789999999999997 9999999999999999995 44556667889999999998  7777776 99999999999


Q ss_pred             EEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214          311 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP  390 (768)
Q Consensus       311 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  390 (768)
                      .||.++|+....+++|..-|.++.-+.-|..++.+++.||++++||++......           ......+++++.|..
T Consensus       116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~-----------t~~~kyqltAv~f~d  184 (338)
T KOG0265|consen  116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK-----------TFENKYQLTAVGFKD  184 (338)
T ss_pred             EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh-----------ccccceeEEEEEecc
Confidence            999999999999999999999999888888899999999999999998432111           112245689999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC----CceeEEeecCCC-
Q 004214          391 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD----GSCLKTFEGHTS-  465 (768)
Q Consensus       391 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~----~~~~~~~~~~~~-  465 (768)
                      .+..+.+|+-|+.|++||++.......+.||..+|+.+..+|+|.++.+-+.|.++++||++.    ..++..+.+|.. 
T Consensus       185 ~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn  264 (338)
T KOG0265|consen  185 TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN  264 (338)
T ss_pred             cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhh
Confidence            999999999999999999999999999999999999999999999999999999999999875    356888887654 


Q ss_pred             ---cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004214          466 ---SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW  533 (768)
Q Consensus       466 ---~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw  533 (768)
                         ....++|+|+++.+..|+.|..+++||..+...+..+.+|.+.|.+++|+|....|.+++.|.+|++=
T Consensus       265 feknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  265 FEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             hhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence               45788999999999999999999999999989999999999999999999999999999999998873

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.7e-35  Score=264.38  Aligned_cols=286  Identities=27%  Similarity=0.463  Sum_probs=247.7

Q ss_pred             EEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEEC-CCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214           24 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL-LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD  102 (768)
Q Consensus        24 ~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~-~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd  102 (768)
                      ..+.||++.|..+.|+|+|..  +|||+.|..|.+|++ ...+-...+++|++.|..+.|++|++.++++|.|.+|+.||
T Consensus        41 m~l~gh~geI~~~~F~P~gs~--~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSC--FASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCe--EeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence            467799999999999999988  999999999999996 45566788999999999999999999999999999999999


Q ss_pred             CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214          103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI  182 (768)
Q Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~  182 (768)
                      .++|++++.+                                                                      
T Consensus       119 ~~tG~~~rk~----------------------------------------------------------------------  128 (338)
T KOG0265|consen  119 AETGKRIRKH----------------------------------------------------------------------  128 (338)
T ss_pred             cccceeeehh----------------------------------------------------------------------
Confidence            9887655443                                                                      


Q ss_pred             cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214          183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE  262 (768)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~  262 (768)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (338)
T KOG0265|consen  129 --------------------------------------------------------------------------------  128 (338)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcE
Q 004214          263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF  342 (768)
Q Consensus       263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  342 (768)
                                      ++|...|..+.  ...-+..++.+|+.||++++||+++...+..+. ....++++.|...+. .
T Consensus       129 ----------------k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~-q  188 (338)
T KOG0265|consen  129 ----------------KGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSD-Q  188 (338)
T ss_pred             ----------------ccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEeccccc-c
Confidence                            33444444443  444566789999999999999999988887764 356799999998866 5


Q ss_pred             EEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----ceEEEE
Q 004214          343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL----VSVVTF  418 (768)
Q Consensus       343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~  418 (768)
                      +.+|+-|+.|++||++          ......+..+|.+.|+.+..+|+|.++.+-+-|.++++||++..    +++..+
T Consensus       189 v~sggIdn~ikvWd~r----------~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if  258 (338)
T KOG0265|consen  189 VISGGIDNDIKVWDLR----------KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF  258 (338)
T ss_pred             eeeccccCceeeeccc----------cCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEe
Confidence            8999999999999997          44478888999999999999999999999999999999998743    457777


Q ss_pred             eccCC----CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEE
Q 004214          419 RGHKR----GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW  491 (768)
Q Consensus       419 ~~~~~----~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw  491 (768)
                      .+|..    ....++|+|+++.+.+|+.|+.+++||......+..+.||.+.|.++.|+|....|.+++.|.+|++=
T Consensus       259 ~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  259 QGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             ecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence            77543    34678999999999999999999999999889999999999999999999999999999999998863

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.3e-35  Score=270.40  Aligned_cols=292  Identities=24%  Similarity=0.432  Sum_probs=264.9

Q ss_pred             eeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC
Q 004214          228 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN  307 (768)
Q Consensus       228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg  307 (768)
                      ...+.+.+.+|.+.|.++++-| .+.+|++|+.|+.+.|||+.+++...++.||...|..++  +++... ++++++.|+
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~va--vS~rHp-YlFs~gedk  215 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVA--VSKRHP-YLFSAGEDK  215 (460)
T ss_pred             cceehhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeee--ecccCc-eEEEecCCC
Confidence            3456677889999999999986 588999999999999999999999999999999999997  555555 599999999


Q ss_pred             eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEE
Q 004214          308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA  387 (768)
Q Consensus       308 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  387 (768)
                      .|+.||+..++.++.+.+|-+.|.|++.+|.-. .|++|+.|.++++||++          .......+.+|..+|.++.
T Consensus       216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiR----------tr~~V~~l~GH~~~V~~V~  284 (460)
T KOG0285|consen  216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIR----------TRASVHVLSGHTNPVASVM  284 (460)
T ss_pred             eeEEEechhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeec----------ccceEEEecCCCCcceeEE
Confidence            999999999999999999999999999999855 89999999999999998          4447788899999999999


Q ss_pred             EccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcE
Q 004214          388 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV  467 (768)
Q Consensus       388 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v  467 (768)
                      +.|-...+++|+.|++|++||+..++...++..|...|.+++.+|....+|+++.| .|+-|++..|..+..+.+|+.-|
T Consensus       285 ~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~ii  363 (460)
T KOG0285|consen  285 CQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAII  363 (460)
T ss_pred             eecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccccee
Confidence            99988899999999999999999999999999999999999999999999999886 59999999999999999999999


Q ss_pred             EEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec--------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          468 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD--------KHEDKIWALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       468 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      +++....|| ++++|+..|.+.+||.++|-..+...        ..+..|++.+|...|..|++|..|.+|++|+-.
T Consensus       364 ntl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  364 NTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED  439 (460)
T ss_pred             eeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence            999998887 88899999999999999986655442        134568999999999999999999999999754

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.3e-36  Score=282.95  Aligned_cols=282  Identities=28%  Similarity=0.473  Sum_probs=246.9

Q ss_pred             CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 004214           29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC  108 (768)
Q Consensus        29 h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~  108 (768)
                      -+..|..+.|.|+|++  |++|+..|.+.+|+..+-.--..+..|.++|+++.|+++|.+++|++.+|.|++|+..-.. 
T Consensus        95 vkc~V~~v~WtPeGRR--Lltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-  171 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRR--LLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-  171 (464)
T ss_pred             cccceeeEEEcCCCce--eEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-
Confidence            3558999999999999  9999999999999985544445567899999999999999999999999999999763211 


Q ss_pred             eeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccC
Q 004214          109 KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDD  188 (768)
Q Consensus       109 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~  188 (768)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (464)
T KOG0284|consen  172 --------------------------------------------------------------------------------  171 (464)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeec-ccCCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004214          189 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV-GYNEEILDLKFLGEEEQYLAVATNIEQVQVY  267 (768)
Q Consensus       189 ~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~  267 (768)
                                                                 .+... .|...|++++|+| ++..+++++.||.|+||
T Consensus       172 -------------------------------------------Vk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiW  207 (464)
T KOG0284|consen  172 -------------------------------------------VKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIW  207 (464)
T ss_pred             -------------------------------------------hHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEE
Confidence                                                       01111 2336889999987 77899999999999999


Q ss_pred             ECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEe
Q 004214          268 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS  347 (768)
Q Consensus       268 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  347 (768)
                      |.........+.+|.-.|.|++  +.|..+ ++++|++|..|++||.+++.++.++.+|...|..+.|+|++ ++|+++|
T Consensus       208 df~~~kee~vL~GHgwdVksvd--WHP~kg-LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~-N~Llt~s  283 (464)
T KOG0284|consen  208 DFRMPKEERVLRGHGWDVKSVD--WHPTKG-LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG-NWLLTGS  283 (464)
T ss_pred             eccCCchhheeccCCCCcceec--cCCccc-eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC-CeeEEcc
Confidence            9999999999999999999997  656555 59999999999999999999999999999999999999997 6999999


Q ss_pred             CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEe-ccCCCe
Q 004214          348 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGI  425 (768)
Q Consensus       348 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v  425 (768)
                      .|..++++|++          ..+....+.+|.+.+++++|+| ...+|.+|+.||.|..|.+...+++..+. +|...|
T Consensus       284 kD~~~kv~DiR----------~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~i  353 (464)
T KOG0284|consen  284 KDQSCKVFDIR----------TMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEI  353 (464)
T ss_pred             CCceEEEEehh----------HhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccce
Confidence            99999999998          3456777889999999999999 67899999999999999998666655543 699999


Q ss_pred             EEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214          426 WSVEFSPVDQVVITASGDKTIKIWSI  451 (768)
Q Consensus       426 ~~v~~s~~~~~l~t~~~d~~i~iwd~  451 (768)
                      ++++|+|-|.+|++|+.|.++++|.-
T Consensus       354 wsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  354 WSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             eeeeccccceeEeecCCCcceeeecc
Confidence            99999999999999999999999974

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.8e-34  Score=266.85  Aligned_cols=317  Identities=18%  Similarity=0.265  Sum_probs=260.6

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA   81 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~   81 (768)
                      ++||||.|..-.||+..+|.....+.||+..|+|+.||.||.+  ||||+.+|.|+||...++.....+...-+.|.-|.
T Consensus        78 l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdgtl--LATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~  155 (399)
T KOG0296|consen   78 LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTL--LATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLK  155 (399)
T ss_pred             eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceE--EEecCCCccEEEEEcccCceEEEeecccCceEEEE
Confidence            6899999999999999999999999999999999999999988  99999999999999999999998887777888999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcE
Q 004214           82 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI  161 (768)
Q Consensus        82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  161 (768)
                      |+|-+..|+.|+.||.+-+|.+.++                                                       
T Consensus       156 WHp~a~illAG~~DGsvWmw~ip~~-------------------------------------------------------  180 (399)
T KOG0296|consen  156 WHPRAHILLAGSTDGSVWMWQIPSQ-------------------------------------------------------  180 (399)
T ss_pred             ecccccEEEeecCCCcEEEEECCCc-------------------------------------------------------
Confidence            9999999999999988888876432                                                       


Q ss_pred             EEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCc
Q 004214          162 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE  241 (768)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (768)
                                                                                                      
T Consensus       181 --------------------------------------------------------------------------------  180 (399)
T KOG0296|consen  181 --------------------------------------------------------------------------------  180 (399)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE
Q 004214          242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG  321 (768)
Q Consensus       242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  321 (768)
                                                     ...+.+.+|+.+++|=.  +.|+|++ +++|..||+|++||+.+++++.
T Consensus       181 -------------------------------~~~kv~~Gh~~~ct~G~--f~pdGKr-~~tgy~dgti~~Wn~ktg~p~~  226 (399)
T KOG0296|consen  181 -------------------------------ALCKVMSGHNSPCTCGE--FIPDGKR-ILTGYDDGTIIVWNPKTGQPLH  226 (399)
T ss_pred             -------------------------------ceeeEecCCCCCccccc--ccCCCce-EEEEecCceEEEEecCCCceeE
Confidence                                           11225566777777765  7888887 9999999999999999999988


Q ss_pred             eeec-ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEE---EccCCCEEEE
Q 004214          322 VGTG-HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA---VAPNDSLVCT  397 (768)
Q Consensus       322 ~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~s~~~~~l~~  397 (768)
                      .+.. ......++.++..+. .++.|+.++.+++-+...+........  ........+...+.|+.   ++..-.+.|+
T Consensus       227 ~~~~~e~~~~~~~~~~~~~~-~~~~g~~e~~~~~~~~~sgKVv~~~n~--~~~~l~~~~e~~~esve~~~~ss~lpL~A~  303 (399)
T KOG0296|consen  227 KITQAEGLELPCISLNLAGS-TLTKGNSEGVACGVNNGSGKVVNCNNG--TVPELKPSQEELDESVESIPSSSKLPLAAC  303 (399)
T ss_pred             EecccccCcCCccccccccc-eeEeccCCccEEEEccccceEEEecCC--CCccccccchhhhhhhhhcccccccchhhc
Confidence            7763 234567778877755 688888888888877654421111100  11111123444444444   4446678999


Q ss_pred             EeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCC
Q 004214          398 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA  477 (768)
Q Consensus       398 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  477 (768)
                      |+-||+|.|||+...++...+. |..+|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.||...|.+++++|+++
T Consensus       304 G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~  381 (399)
T KOG0296|consen  304 GSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKR  381 (399)
T ss_pred             ccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCc
Confidence            9999999999998877666555 899999999999 88999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcEEEEECC
Q 004214          478 QIVSCGADGLVKLWTVR  494 (768)
Q Consensus       478 ~l~s~~~dg~i~iwd~~  494 (768)
                      ++++++.|++.+||++.
T Consensus       382 ~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  382 LVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEEecCCCeEEEEecC
Confidence            99999999999999864

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.2e-33  Score=251.02  Aligned_cols=290  Identities=29%  Similarity=0.473  Sum_probs=240.4

Q ss_pred             EEEEEEcCCCcEEEEEEeeC-CCccEEEEEeCCCcEEEEECCC---CeeEEEe-cCccceeEEEEEcCCCCEEEEEeCCC
Q 004214           22 CTHYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWDLLA---KKCVATL-DKHFSRVTSMAITSDGSTLISAGRDK   96 (768)
Q Consensus        22 ~~~~l~gh~~~V~~l~~spd-~~~~~l~sg~~dg~I~iWd~~~---~~~~~~l-~~h~~~V~~l~fs~d~~~L~s~~~dg   96 (768)
                      ..+.++||.+.|..++|+|- |.  +||||+.|..|+||+...   -.+...+ .+|+..|.+++|+|.|++|++++.|.
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~--ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGV--ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCce--EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            46789999999999999996 44  599999999999999974   4555556 36999999999999999999999999


Q ss_pred             eEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeec
Q 004214           97 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK  176 (768)
Q Consensus        97 ~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~  176 (768)
                      ++.||.-..+                                                                      
T Consensus        84 t~~Iw~k~~~----------------------------------------------------------------------   93 (312)
T KOG0645|consen   84 TVVIWKKEDG----------------------------------------------------------------------   93 (312)
T ss_pred             eEEEeecCCC----------------------------------------------------------------------
Confidence            9999953211                                                                      


Q ss_pred             CCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEE
Q 004214          177 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLA  256 (768)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  256 (768)
                                                                                                      
T Consensus        94 --------------------------------------------------------------------------------   93 (312)
T KOG0645|consen   94 --------------------------------------------------------------------------------   93 (312)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC---ceEEEeeecccCcEEEE
Q 004214          257 VATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES---RCCVGVGTGHMGAVGAV  333 (768)
Q Consensus       257 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~  333 (768)
                                    ..+++..+.||...|.|++  ++.+|+. ||+++.|..|-+|....   ..+...+++|+..|..+
T Consensus        94 --------------efecv~~lEGHEnEVK~Va--ws~sG~~-LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V  156 (312)
T KOG0645|consen   94 --------------EFECVATLEGHENEVKCVA--WSASGNY-LATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHV  156 (312)
T ss_pred             --------------ceeEEeeeeccccceeEEE--EcCCCCE-EEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEE
Confidence                          1233447888999999997  6666665 99999999999998874   46788899999999999


Q ss_pred             EEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 004214          334 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV  413 (768)
Q Consensus       334 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  413 (768)
                      .|+|. ..+|++++.|.+|++|+-...       -.......+.+|...|.+++|+|.|..|++++.|++++||...+.-
T Consensus       157 ~WHPt-~dlL~S~SYDnTIk~~~~~~d-------ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~  228 (312)
T KOG0645|consen  157 IWHPT-EDLLFSCSYDNTIKVYRDEDD-------DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL  228 (312)
T ss_pred             EEcCC-cceeEEeccCCeEEEEeecCC-------CCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc
Confidence            99997 448999999999999986632       1556788889999999999999999999999999999999865321


Q ss_pred             eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC------cee-EEeecCCCcEEEEEEEeC-CCEEEEEeCC
Q 004214          414 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG------SCL-KTFEGHTSSVLRASFLTR-GAQIVSCGAD  485 (768)
Q Consensus       414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~------~~~-~~~~~~~~~v~~~~~s~~-~~~l~s~~~d  485 (768)
                          -..|..++..+.|.  ...|++++.|+.|++|--...      +.+ ..-..|...|++++|.|. .++|++|+.|
T Consensus       229 ----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD  302 (312)
T KOG0645|consen  229 ----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD  302 (312)
T ss_pred             ----chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCC
Confidence                12378899999998  568999999999999986543      111 223468899999999995 7799999999


Q ss_pred             CcEEEEECC
Q 004214          486 GLVKLWTVR  494 (768)
Q Consensus       486 g~i~iwd~~  494 (768)
                      |.|++|.+.
T Consensus       303 G~v~~W~l~  311 (312)
T KOG0645|consen  303 GIVNFWELE  311 (312)
T ss_pred             ceEEEEEec
Confidence            999999864

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=2.3e-32  Score=262.79  Aligned_cols=461  Identities=17%  Similarity=0.204  Sum_probs=346.2

Q ss_pred             cEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEE--EeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCE
Q 004214           11 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS--GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGST   88 (768)
Q Consensus        11 ~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~s--g~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~   88 (768)
                      .|++||..+-..++.+..-...|+|++||+.....+++.  -+.+..+.|||+..+......+.-+..|....|.|.+..
T Consensus       135 hvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~n  214 (626)
T KOG2106|consen  135 HVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPN  214 (626)
T ss_pred             eeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCc
Confidence            699999999998999998889999999998644433443  355677999999999888888877888999999997776


Q ss_pred             EEEEeCCCeEEEEECCCCeeeeeeec-----ceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEE
Q 004214           89 LISAGRDKVVNLWDLRDYSCKLTVPT-----YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVR  163 (768)
Q Consensus        89 L~s~~~dg~i~vWd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~  163 (768)
                      |+.....+.+.+|+++.+...++...     ...+.+++|.+++                        .++++..+|.|.
T Consensus       215 liit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng------------------------dviTgDS~G~i~  270 (626)
T KOG2106|consen  215 LIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG------------------------DVITGDSGGNIL  270 (626)
T ss_pred             EEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC------------------------CEEeecCCceEE
Confidence            66666678999999999887665432     2458899999998                        589999999999


Q ss_pred             EEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCcee
Q 004214          164 MWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEIL  243 (768)
Q Consensus       164 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  243 (768)
                      +|+..+..+..+..          .+..++.+++...++. +++++.|..+..|+-.-.+.      ....+....+.|.
T Consensus       271 Iw~~~~~~~~k~~~----------aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~------r~~elPe~~G~iR  333 (626)
T KOG2106|consen  271 IWSKGTNRISKQVH----------AHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKL------RETELPEQFGPIR  333 (626)
T ss_pred             EEeCCCceEEeEee----------ecCCceEEEEEecCcc-EeecCccceEEecccccccc------ccccCchhcCCee
Confidence            99997664433221          3446677777666555 45599999999999332221      1223334455666


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee
Q 004214          244 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG  323 (768)
Q Consensus       244 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  323 (768)
                      .++-..++   +++|+..+.|.-=.++++-.+ ...+|.+....++  ..+... ++++++.|+.+++|+  ..++....
T Consensus       334 tv~e~~~d---i~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla--~hps~~-q~~T~gqdk~v~lW~--~~k~~wt~  404 (626)
T KOG2106|consen  334 TVAEGKGD---ILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLA--THPSKN-QLLTCGQDKHVRLWN--DHKLEWTK  404 (626)
T ss_pred             EEecCCCc---EEEeeccceEEEeeecCCceE-EEEecccceeeEE--cCCChh-heeeccCcceEEEcc--CCceeEEE
Confidence            66643322   888888777776666655444 5678888888886  555555 499999999999999  33333322


Q ss_pred             ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCc
Q 004214          324 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT  403 (768)
Q Consensus       324 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  403 (768)
                       .-..++.|+.|+|.|  .++.|+..|...+.|....          ....... .+.++++++|+|+|.+||+|+.|+.
T Consensus       405 -~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~----------~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~  470 (626)
T KOG2106|consen  405 -IIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQ----------DLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNH  470 (626)
T ss_pred             -EecCceeEeeccCcc--eEEEeeccceEEEEecccc----------eeEEEEe-cCCceEEEEEcCCCCEEEEecCCCe
Confidence             245788999999997  6999999999999998742          1222222 3789999999999999999999999


Q ss_pred             EEEEeCCCCceE-EE-EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEE--------------ee----cC
Q 004214          404 ACVWRLPDLVSV-VT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT--------------FE----GH  463 (768)
Q Consensus       404 i~i~d~~~~~~~-~~-~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~--------------~~----~~  463 (768)
                      |++|.+...... .. -+.+..+|+.+.||+|++++.+-+.|-.|..|....-..+..              |.    .|
T Consensus       471 iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~  550 (626)
T KOG2106|consen  471 IYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSD  550 (626)
T ss_pred             EEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccC
Confidence            999998654322 22 223458999999999999999999999999995432221111              11    24


Q ss_pred             CCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe---EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214          464 TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE---CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       464 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~  535 (768)
                      ...|..++-+...+.+++|...|.|++|...-.+   ....+.+|.+.|++++|..+...+++.+.|..|..|++
T Consensus       551 ~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  551 GTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             CchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            4455556666778899999999999999865433   44567789999999999999999999889999999986

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.3e-35  Score=287.88  Aligned_cols=285  Identities=24%  Similarity=0.408  Sum_probs=261.9

Q ss_pred             eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEE
Q 004214          233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW  312 (768)
Q Consensus       233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iw  312 (768)
                      +.+..+.+.|-++.++| .++.++++-.+|.|.|||.++...++.+.-..-+|.+..  +....+. +++|+.|..|++|
T Consensus         7 rk~~~rSdRVKsVd~HP-tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~k--fiaRknW-iv~GsDD~~IrVf   82 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHP-TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAK--FIARKNW-IVTGSDDMQIRVF   82 (794)
T ss_pred             hHhhccCCceeeeecCC-CCceEEEeeecCeeEEEecccceeeeeeeecccchhhhe--eeeccce-EEEecCCceEEEE
Confidence            34445777889999885 677888888889999999999999999998888888876  5555555 9999999999999


Q ss_pred             eCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-C
Q 004214          313 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-N  391 (768)
Q Consensus       313 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~  391 (768)
                      +..+++.+..+..|..-|.+++.+|..+ ++++++.|-+|++||...         ......++.+|...|.+++|+| |
T Consensus        83 nynt~ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~---------~wa~~qtfeGH~HyVMqv~fnPkD  152 (794)
T KOG0276|consen   83 NYNTGEKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWEN---------EWACEQTFEGHEHYVMQVAFNPKD  152 (794)
T ss_pred             ecccceeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccC---------ceeeeeEEcCcceEEEEEEecCCC
Confidence            9999999999999999999999999955 899999999999999985         5668889999999999999999 7


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCC--CEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEE
Q 004214          392 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD--QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLR  469 (768)
Q Consensus       392 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  469 (768)
                      .+.+|+++.|++|++|.+.+..+..++.+|..+|+|++|-+-|  .+|++|+.|.+|+|||..+..|+++++||...|..
T Consensus       153 ~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~  232 (794)
T KOG0276|consen  153 PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSF  232 (794)
T ss_pred             ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceE
Confidence            7899999999999999999999999999999999999998854  69999999999999999999999999999999999


Q ss_pred             EEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 004214          470 ASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVN  531 (768)
Q Consensus       470 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~  531 (768)
                      +.|+|.=..+++|++||+++||+..+.+...++...-.+||+++-.+.+..++.|..+|.|.
T Consensus       233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT  294 (794)
T ss_pred             EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence            99999999999999999999999999999999887889999999999988999999888874

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=4.5e-36  Score=274.81  Aligned_cols=273  Identities=27%  Similarity=0.513  Sum_probs=218.7

Q ss_pred             EEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEE
Q 004214            3 ALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAI   82 (768)
Q Consensus         3 latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~f   82 (768)
                      +++|..|++|+|||..+..+.+.|.||++.|-|+.|..  +  ++++|+.|.+|+|||+.+|+++.++-+|...|..+.|
T Consensus       210 iVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--r--viisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf  285 (499)
T KOG0281|consen  210 IVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--R--VIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRF  285 (499)
T ss_pred             hhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--e--EEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEE
Confidence            56778888888888888888888888888888888754  3  4788888888888888888888888888888888888


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEE
Q 004214           83 TSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIV  162 (768)
Q Consensus        83 s~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i  162 (768)
                      +  +.+++|++.|.++.|||+.+..                                                       
T Consensus       286 ~--ng~mvtcSkDrsiaVWdm~sps-------------------------------------------------------  308 (499)
T KOG0281|consen  286 S--NGYMVTCSKDRSIAVWDMASPT-------------------------------------------------------  308 (499)
T ss_pred             e--CCEEEEecCCceeEEEeccCch-------------------------------------------------------
Confidence            7  4478888888888888775421                                                       


Q ss_pred             EEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCce
Q 004214          163 RMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEI  242 (768)
Q Consensus       163 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i  242 (768)
                                                                                       .....+.+.||...|
T Consensus       309 -----------------------------------------------------------------~it~rrVLvGHrAaV  323 (499)
T KOG0281|consen  309 -----------------------------------------------------------------DITLRRVLVGHRAAV  323 (499)
T ss_pred             -----------------------------------------------------------------HHHHHHHHhhhhhhe
Confidence                                                                             011223456778888


Q ss_pred             eEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe
Q 004214          243 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV  322 (768)
Q Consensus       243 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  322 (768)
                      ..+.|   +++++++++.|.+|++|++.++.+++++.+|...|.|+.    - .+.++++|+.|.+|++||+..|.+++.
T Consensus       324 NvVdf---d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQ----Y-r~rlvVSGSSDntIRlwdi~~G~cLRv  395 (499)
T KOG0281|consen  324 NVVDF---DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ----Y-RDRLVVSGSSDNTIRLWDIECGACLRV  395 (499)
T ss_pred             eeecc---ccceEEEecCCceEEEEeccceeeehhhhcccccceehh----c-cCeEEEecCCCceEEEEeccccHHHHH
Confidence            88887   445999999999999999999999999999999999985    2 334699999999999999999999999


Q ss_pred             eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC
Q 004214          323 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR  402 (768)
Q Consensus       323 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  402 (768)
                      +.||..-|.++.|...   .+++|+.||+|++||+........ +...........|.+.|..+.|.  ...+++++.|.
T Consensus       396 LeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldpra-~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHdd  469 (499)
T KOG0281|consen  396 LEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDPRA-PASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDD  469 (499)
T ss_pred             HhchHHhhhheeecCc---eeeeccccceEEEEecccccCCcc-cccchHHHhhhhccceeEEEeec--ceEEEeccCCC
Confidence            9999999999999865   599999999999999986543221 22333455566788899999985  56799999999


Q ss_pred             cEEEEeCCCCceE
Q 004214          403 TACVWRLPDLVSV  415 (768)
Q Consensus       403 ~i~i~d~~~~~~~  415 (768)
                      +|.|||+.++.+.
T Consensus       470 tILiWdFl~~~~~  482 (499)
T KOG0281|consen  470 TILIWDFLNGPPS  482 (499)
T ss_pred             eEEEEEcCCCCcc
Confidence            9999999876544

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=5e-35  Score=280.39  Aligned_cols=292  Identities=22%  Similarity=0.393  Sum_probs=251.2

Q ss_pred             EEEEEEcCCCcEEEEEEee-CCCccEEEEEeCCCcEEEEECCC-CeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEE
Q 004214           22 CTHYFKGHKGVVSSILFHP-DTDKSLLFSGSDDATVRVWDLLA-KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN   99 (768)
Q Consensus        22 ~~~~l~gh~~~V~~l~~sp-d~~~~~l~sg~~dg~I~iWd~~~-~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~   99 (768)
                      .++.+.||+..|+++.|.| .+.  +|++|+.|+.|+||++.. +++++++.+|..+|.+++|+++|..++|+|-|+.|+
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~h--LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK  283 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGH--LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK  283 (503)
T ss_pred             heeeccCCccccchhhhccceee--EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence            4688999999999999999 444  599999999999999976 999999999999999999999999999999999999


Q ss_pred             EEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCc
Q 004214          100 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD  179 (768)
Q Consensus       100 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~  179 (768)
                      +||+++|+++..+....                                                               
T Consensus       284 lwDtETG~~~~~f~~~~---------------------------------------------------------------  300 (503)
T KOG0282|consen  284 LWDTETGQVLSRFHLDK---------------------------------------------------------------  300 (503)
T ss_pred             eeccccceEEEEEecCC---------------------------------------------------------------
Confidence            99999999877765322                                                               


Q ss_pred             eeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEe
Q 004214          180 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT  259 (768)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  259 (768)
                                                                                   .+.++.|.|++.+.+++|+
T Consensus       301 -------------------------------------------------------------~~~cvkf~pd~~n~fl~G~  319 (503)
T KOG0282|consen  301 -------------------------------------------------------------VPTCVKFHPDNQNIFLVGG  319 (503)
T ss_pred             -------------------------------------------------------------CceeeecCCCCCcEEEEec
Confidence                                                                         3456666666778899999


Q ss_pred             CCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee-cccCcEEEEEEecC
Q 004214          260 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKK  338 (768)
Q Consensus       260 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~  338 (768)
                      .++.|+.||+++++.++.+..|-+.|..+.  |.+.+.. +++.+.|+.+++|+......+.... .+.....++..+|+
T Consensus       320 sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~--F~~~g~r-FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~  396 (503)
T KOG0282|consen  320 SDKKIRQWDIRSGKVVQEYDRHLGAILDIT--FVDEGRR-FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPN  396 (503)
T ss_pred             CCCcEEEEeccchHHHHHHHhhhhheeeeE--EccCCce-EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCC
Confidence            999999999999999999999999999998  8888887 9999999999999998876665433 33455678999999


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccC--CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEE
Q 004214          339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG--KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV  416 (768)
Q Consensus       339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~  416 (768)
                      ++ ++++-+-|+.|.++.+...       ........+.+|.  +.-..+.|||||.+|++|+.||.+.+||.++-+.+.
T Consensus       397 ~~-~~~aQs~dN~i~ifs~~~~-------~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~  468 (503)
T KOG0282|consen  397 GK-WFAAQSMDNYIAIFSTVPP-------FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVS  468 (503)
T ss_pred             CC-eehhhccCceEEEEecccc-------cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhh
Confidence            76 8999999999999986532       2233344445553  455678999999999999999999999999999999


Q ss_pred             EEeccCCCeEEEEEccCC-CEEEEeeCCCcEEEEe
Q 004214          417 TFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWS  450 (768)
Q Consensus       417 ~~~~~~~~v~~v~~s~~~-~~l~t~~~d~~i~iwd  450 (768)
                      .++.|..++..+.|+|.. ..+||++.||.|++||
T Consensus       469 ~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  469 KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            999999999999999964 6899999999999996

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-32  Score=243.52  Aligned_cols=290  Identities=26%  Similarity=0.463  Sum_probs=246.6

Q ss_pred             EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC---ceeeeee-eCCccceEEEeeeeecCCCEEEEEEeC
Q 004214          230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS---MSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSK  305 (768)
Q Consensus       230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~---~~~~~~~-~~~~~~v~~l~~~~~~~~~~~l~~~~~  305 (768)
                      .....+.+|.+.+..++|+|..+..||+++.|..|++|+...   ..+...+ .+|+..|..++  +.|.++ +|++|+.
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvA--wsp~g~-~La~aSF   81 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVA--WSPHGR-YLASASF   81 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeee--ecCCCc-EEEEeec
Confidence            345677899999999999987688999999999999999985   3444444 57999999997  777777 5999999


Q ss_pred             CCeEEEEeCCC--ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCe
Q 004214          306 DNSVRLWDSES--RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI  383 (768)
Q Consensus       306 dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i  383 (768)
                      |.++.||.-..  .+++..+.+|...|.+++|+++|. +|++++.|++|-+|.+....       .......+..|...|
T Consensus        82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~dedd-------Efec~aVL~~HtqDV  153 (312)
T KOG0645|consen   82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDD-------EFECIAVLQEHTQDV  153 (312)
T ss_pred             cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCC-------cEEEEeeeccccccc
Confidence            99999997664  478889999999999999999976 89999999999999988443       455788889999999


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCC---CCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214          384 NSLAVAPNDSLVCTGSQDRTACVWRLP---DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF  460 (768)
Q Consensus       384 ~~~~~s~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~  460 (768)
                      ..+.|+|...+|+++++|.+|++|+-.   +..+..++.+|...|++++|+|.|..|++++.|++|+||-+.+.-.    
T Consensus       154 K~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----  229 (312)
T KOG0645|consen  154 KHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----  229 (312)
T ss_pred             cEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----
Confidence            999999999999999999999999876   3468899999999999999999999999999999999998652211    


Q ss_pred             ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC------eEEE-EeccCCCcEEEEEEcCC-CCEEEEEeCCCcEEE
Q 004214          461 EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG------ECIA-TYDKHEDKIWALAVGKK-TEMFATGGSDALVNL  532 (768)
Q Consensus       461 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~------~~~~-~~~~~~~~v~~l~~s~~-~~~l~s~~~dg~v~v  532 (768)
                      ..|..++..+.|.  ...|++++.|+.|++|.-..+      +.+. .-..|...|+++.|.|. ...|++|+.||.|++
T Consensus       230 ~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~  307 (312)
T KOG0645|consen  230 GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNF  307 (312)
T ss_pred             hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEE
Confidence            1377889999998  448999999999999976542      1111 22468899999999995 789999999999999


Q ss_pred             EEcC
Q 004214          533 WHDS  536 (768)
Q Consensus       533 w~~~  536 (768)
                      |.+.
T Consensus       308 W~l~  311 (312)
T KOG0645|consen  308 WELE  311 (312)
T ss_pred             EEec
Confidence            9864

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-33  Score=286.29  Aligned_cols=295  Identities=24%  Similarity=0.491  Sum_probs=249.4

Q ss_pred             EEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004214           26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD  105 (768)
Q Consensus        26 l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~  105 (768)
                      |...+..|..++|||.  +.+++++-..|.|.+||..-+.++..|..|.++|..++|+|++..++|||.|..|+||+..+
T Consensus         5 fEskSsRvKglsFHP~--rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~   82 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPK--RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT   82 (1202)
T ss_pred             hhcccccccceecCCC--CCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence            4456778999999994  55699999999999999999999999999999999999999999999999999999998876


Q ss_pred             CeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeeccc
Q 004214          106 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE  185 (768)
Q Consensus       106 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~  185 (768)
                      .+|+.                                                                           
T Consensus        83 rrclf---------------------------------------------------------------------------   87 (1202)
T KOG0292|consen   83 RRCLF---------------------------------------------------------------------------   87 (1202)
T ss_pred             ceehh---------------------------------------------------------------------------
Confidence            55433                                                                           


Q ss_pred             ccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004214          186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ  265 (768)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~  265 (768)
                                                                                                      
T Consensus        88 --------------------------------------------------------------------------------   87 (1202)
T KOG0292|consen   88 --------------------------------------------------------------------------------   87 (1202)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEE
Q 004214          266 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS  345 (768)
Q Consensus       266 i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  345 (768)
                                 ++.+|-+.|..+.  |.+.-.+ +++++.|.+|+||+..++.++..+.||...|.|..|+|... ++++
T Consensus        88 -----------tL~GHlDYVRt~~--FHheyPW-IlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED-lIVS  152 (1202)
T KOG0292|consen   88 -----------TLLGHLDYVRTVF--FHHEYPW-ILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-LIVS  152 (1202)
T ss_pred             -----------hhccccceeEEee--ccCCCce-EEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc-eEEE
Confidence                       3445555666553  4444454 99999999999999999999999999999999999999744 8999


Q ss_pred             EeCCCeEEEEeCCCCCCCCcccc-------------------ccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 004214          346 GSSDHTIKVWSFDGLSDDAEQPM-------------------NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV  406 (768)
Q Consensus       346 ~~~dg~i~iwd~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  406 (768)
                      +|-|.+|++||+.+.......+.                   ......++.+|...|+.++|+|.-.++++|+.|..|++
T Consensus       153 aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKl  232 (1202)
T KOG0292|consen  153 ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL  232 (1202)
T ss_pred             ecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeE
Confidence            99999999999976532221111                   23345677899999999999999999999999999999


Q ss_pred             EeCCCCc--eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeC
Q 004214          407 WRLPDLV--SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA  484 (768)
Q Consensus       407 ~d~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  484 (768)
                      |.+..-+  .+-+.++|...|.++-|+|..+++++.++|++|+|||+...+.+++|+......+.++-+|..+++++|-.
T Consensus       233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHD  312 (1202)
T KOG0292|consen  233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHD  312 (1202)
T ss_pred             EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecC
Confidence            9987554  45678899999999999999999999999999999999999999999877888888999999888877765


Q ss_pred             CCcEEEEEC
Q 004214          485 DGLVKLWTV  493 (768)
Q Consensus       485 dg~i~iwd~  493 (768)
                      .| +.||.+
T Consensus       313 sG-m~VFkl  320 (1202)
T KOG0292|consen  313 SG-MIVFKL  320 (1202)
T ss_pred             Cc-eEEEEE
Confidence            55 444444

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.3e-32  Score=278.90  Aligned_cols=286  Identities=34%  Similarity=0.572  Sum_probs=257.9

Q ss_pred             eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214          234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD  313 (768)
Q Consensus       234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd  313 (768)
                      .+.+|.++|.+++|++ +++++++++.+|.+.+|+..++.....+..|...+..+.  +.+++.. +++++.+|.|++|+
T Consensus         4 ~~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~-l~~~~~~~~i~i~~   79 (289)
T cd00200           4 TLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVA--ASADGTY-LASGSSDKTIRLWD   79 (289)
T ss_pred             HhcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEE--ECCCCCE-EEEEcCCCeEEEEE
Confidence            4557889999999986 578999999999999999999988888899999987776  6666655 99999999999999


Q ss_pred             CCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC
Q 004214          314 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS  393 (768)
Q Consensus       314 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  393 (768)
                      +.+++....+..|...+.++.|+|++ .++++++.+|.+.+||+...          ........|...+.+++|+|++.
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~  148 (289)
T cd00200          80 LETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETG----------KCLTTLRGHTDWVNSVAFSPDGT  148 (289)
T ss_pred             cCcccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCc----------EEEEEeccCCCcEEEEEEcCcCC
Confidence            99988888888999999999999984 47888888999999999732          23444557888999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEE
Q 004214          394 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL  473 (768)
Q Consensus       394 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  473 (768)
                      ++++++.||.|++||+.+++....+..|...+.+++|+|+++.+++++.|+.|++||+..++.+..+..|...+.++.|+
T Consensus       149 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  228 (289)
T cd00200         149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS  228 (289)
T ss_pred             EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEc
Confidence            99998889999999999999999999999999999999999999999999999999999999999998899999999999


Q ss_pred             eCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214          474 TRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  534 (768)
Q Consensus       474 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~  534 (768)
                      |++.++++++.||.|++|++.+++++..+..|...|.+++|+|++.+|++++.||.+++|+
T Consensus       229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            9988999888899999999999999999999999999999999999999999999999995

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.1e-34  Score=268.87  Aligned_cols=292  Identities=22%  Similarity=0.335  Sum_probs=256.0

Q ss_pred             EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC---eeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEE
Q 004214           23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK---KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN   99 (768)
Q Consensus        23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~---~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~   99 (768)
                      .+.+..|.+.|.-+.||++|++  |||++.|.+..||.+..-   +..+++.+|..+|.-+.||||.+||++||.|..+.
T Consensus       217 ~qil~~htdEVWfl~FS~nGky--LAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~  294 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSHNGKY--LASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS  294 (519)
T ss_pred             hhhHhhCCCcEEEEEEcCCCee--EeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence            4677889999999999999998  999999999999998543   45788999999999999999999999999999999


Q ss_pred             EEECCCCeeeeeeecc--eeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecC
Q 004214          100 LWDLRDYSCKLTVPTY--EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS  177 (768)
Q Consensus       100 vWd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~  177 (768)
                      +||+.+|.+...++..  ..+.+.+|.|++.                       .+++|+.|+.+..||+++.....-..
T Consensus       295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-----------------------~~V~Gs~dr~i~~wdlDgn~~~~W~g  351 (519)
T KOG0293|consen  295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-----------------------RFVTGSPDRTIIMWDLDGNILGNWEG  351 (519)
T ss_pred             eccCCcchhhhhcccCcCCCcceeEEccCCc-----------------------eeEecCCCCcEEEecCCcchhhcccc
Confidence            9999999999888776  5688999999987                       89999999999999999874322211


Q ss_pred             CceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEE
Q 004214          178 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV  257 (768)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  257 (768)
                      .          ....+..++..+++..+++++.|..+.+|+......        +.+.....+|++...+ .++.++++
T Consensus       352 v----------r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d--------r~lise~~~its~~iS-~d~k~~Lv  412 (519)
T KOG0293|consen  352 V----------RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD--------RGLISEEQPITSFSIS-KDGKLALV  412 (519)
T ss_pred             c----------ccceeEEEEEcCCCcEEEEEecccceeeechhhhhh--------hccccccCceeEEEEc-CCCcEEEE
Confidence            1          114567788999999999999999999998765432        2245556788888887 47888889


Q ss_pred             EeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEec
Q 004214          258 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK  337 (768)
Q Consensus       258 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  337 (768)
                      .-.+..+++||++....++.+.||...-.-+..||-..+..++++|+.|+.|+||+..+++++..+.||...|.+++|+|
T Consensus       413 nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP  492 (519)
T KOG0293|consen  413 NLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP  492 (519)
T ss_pred             EcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC
Confidence            99999999999999999999999999888888888887777899999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEeCCCeEEEEeCC
Q 004214          338 KLQNFLVSGSSDHTIKVWSFD  358 (768)
Q Consensus       338 ~~~~~l~s~~~dg~i~iwd~~  358 (768)
                      ..+.++++++.||+|+||...
T Consensus       493 ~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  493 ADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             CCHHHhhccCCCCeEEEecCC
Confidence            999999999999999999765

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=2.7e-31  Score=255.49  Aligned_cols=419  Identities=17%  Similarity=0.264  Sum_probs=307.8

Q ss_pred             cEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCC--------cEEEEECCCCeeEEEecCccceeEEEEE
Q 004214           11 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA--------TVRVWDLLAKKCVATLDKHFSRVTSMAI   82 (768)
Q Consensus        11 ~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg--------~I~iWd~~~~~~~~~l~~h~~~V~~l~f   82 (768)
                      .+.+++++... ++.+.||+..|.||+.+||.-.  +++|-.-|        .|+|||..+-..+..+......|++++|
T Consensus        86 V~Vl~n~ee~~-Qr~y~GH~ddikc~~vHPdri~--vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaF  162 (626)
T KOG2106|consen   86 VGVLYNWEERS-QRHYLGHNDDIKCMAVHPDRIR--VATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAF  162 (626)
T ss_pred             EEEEEeehhhh-cccccCCCCceEEEeecCCcee--eccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeee
Confidence            44555554332 4566789999999999997554  88775544        5999999888888888877788999999


Q ss_pred             cC--CCCEEEEE--eCCCeEEEEECCCCeeeeeeecce-eEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEee
Q 004214           83 TS--DGSTLISA--GRDKVVNLWDLRDYSCKLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG  157 (768)
Q Consensus        83 s~--d~~~L~s~--~~dg~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (768)
                      |+  .|.+|...  +.+..+.|||++.+.........+ .+....|.|.+.                       .++...
T Consensus       163 sk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~-----------------------nliit~  219 (626)
T KOG2106|consen  163 SKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDP-----------------------NLIITC  219 (626)
T ss_pred             cccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCC-----------------------cEEEEe
Confidence            97  35555554  456789999998876655544332 234444554443                       344444


Q ss_pred             CCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecc
Q 004214          158 ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG  237 (768)
Q Consensus       158 ~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~  237 (768)
                      ..|.+.+|+++++.+....                                                    - .  --..
T Consensus       220 Gk~H~~Fw~~~~~~l~k~~----------------------------------------------------~-~--fek~  244 (626)
T KOG2106|consen  220 GKGHLYFWTLRGGSLVKRQ----------------------------------------------------G-I--FEKR  244 (626)
T ss_pred             CCceEEEEEccCCceEEEe----------------------------------------------------e-c--cccc
Confidence            4455555555444222100                                                    0 0  0001


Q ss_pred             cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc
Q 004214          238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR  317 (768)
Q Consensus       238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  317 (768)
                      ...-|.+++|.+.  .-+++|.++|.|.||+..+.+..+....|.+.|.++.  ...++.  |++|++|..|..||-. -
T Consensus       245 ekk~Vl~v~F~en--gdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~--~lr~Gt--llSGgKDRki~~Wd~~-y  317 (626)
T KOG2106|consen  245 EKKFVLCVTFLEN--GDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLC--MLRDGT--LLSGGKDRKIILWDDN-Y  317 (626)
T ss_pred             cceEEEEEEEcCC--CCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEE--EecCcc--EeecCccceEEecccc-c
Confidence            1246889999753  3688999999999999999888888789999999996  555553  6779999999999932 2


Q ss_pred             eEEE--eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE
Q 004214          318 CCVG--VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV  395 (768)
Q Consensus       318 ~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  395 (768)
                      +.++  .+....++|..++-...  . ++.|...+.|..=.+...           ......+|......++.+|+...+
T Consensus       318 ~k~r~~elPe~~G~iRtv~e~~~--d-i~vGTtrN~iL~Gt~~~~-----------f~~~v~gh~delwgla~hps~~q~  383 (626)
T KOG2106|consen  318 RKLRETELPEQFGPIRTVAEGKG--D-ILVGTTRNFILQGTLENG-----------FTLTVQGHGDELWGLATHPSKNQL  383 (626)
T ss_pred             cccccccCchhcCCeeEEecCCC--c-EEEeeccceEEEeeecCC-----------ceEEEEecccceeeEEcCCChhhe
Confidence            2222  23445677887765433  2 777777777766555432           455668899999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeC
Q 004214          396 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR  475 (768)
Q Consensus       396 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  475 (768)
                      ++++.|+.+++|+  ..++..+.. -..++.|++|+|.| .+|.|...|...+.|.++...+..-.. ..+++.++|+|+
T Consensus       384 ~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~  458 (626)
T KOG2106|consen  384 LTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPD  458 (626)
T ss_pred             eeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCC
Confidence            9999999999999  444544433 56789999999999 999999999999999998666655554 899999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCC-eEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          476 GAQIVSCGADGLVKLWTVRTG-ECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       476 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~-~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      |.+||.|+.|+.|+||.+..+ ....... -+..+|+.+.||+|+++|.+-+.|-.|..|...
T Consensus       459 G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  459 GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             CCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence            999999999999999998754 3333322 244899999999999999999999999999543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.7e-32  Score=278.03  Aligned_cols=288  Identities=35%  Similarity=0.632  Sum_probs=248.8

Q ss_pred             EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214           23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD  102 (768)
Q Consensus        23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd  102 (768)
                      ++.+++|.+.|++++|+|+++.  +++++.||.|++|++.+++....+..|...+..+.|+|++++|++++.+|.|++||
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~--l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~   79 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKL--LATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD   79 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCE--EEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence            3567899999999999999877  99999999999999999988889999999999999999999999999999999999


Q ss_pred             CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214          103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI  182 (768)
Q Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~  182 (768)
                      +.+++..                                                                         
T Consensus        80 ~~~~~~~-------------------------------------------------------------------------   86 (289)
T cd00200          80 LETGECV-------------------------------------------------------------------------   86 (289)
T ss_pred             cCcccce-------------------------------------------------------------------------
Confidence            8653211                                                                         


Q ss_pred             cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214          183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE  262 (768)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~  262 (768)
                                                                                                      
T Consensus        87 --------------------------------------------------------------------------------   86 (289)
T cd00200          87 --------------------------------------------------------------------------------   86 (289)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcE
Q 004214          263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF  342 (768)
Q Consensus       263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  342 (768)
                                   ..+..|...+.++.  +.+++ .++++++.+|.|.+||+.+++....+..|...+.+++|+|++. +
T Consensus        87 -------------~~~~~~~~~i~~~~--~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~  149 (289)
T cd00200          87 -------------RTLTGHTSYVSSVA--FSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT-F  149 (289)
T ss_pred             -------------EEEeccCCcEEEEE--EcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC-E
Confidence                         01223344555554  44443 3477777799999999999998888889999999999999844 7


Q ss_pred             EEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC
Q 004214          343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK  422 (768)
Q Consensus       343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  422 (768)
                      +++++.++.|++||+...          ........|...+.+++|+|+++.+++++.|+.+++||+.+++.+..+..|.
T Consensus       150 l~~~~~~~~i~i~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~  219 (289)
T cd00200         150 VASSSQDGTIKLWDLRTG----------KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE  219 (289)
T ss_pred             EEEEcCCCcEEEEEcccc----------ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC
Confidence            777777999999999733          2344455778899999999999999999999999999999999998888899


Q ss_pred             CCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214          423 RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT  492 (768)
Q Consensus       423 ~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  492 (768)
                      .++.+++|+|++.++++++.||.|++||+.++++...+.+|...+.+++|+|++++|++++.||.|++|+
T Consensus       220 ~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         220 NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            9999999999999999988899999999999999999999999999999999999999999999999996

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.6e-32  Score=274.94  Aligned_cols=323  Identities=16%  Similarity=0.285  Sum_probs=257.9

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA   81 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~   81 (768)
                      ++.++-..|.|.+||..=+.+++.|.+|.++|..++|||++..  ++||++|..|+||+..+.+|+.+|.||-.-|..+.
T Consensus        23 wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qpl--FVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~  100 (1202)
T KOG0292|consen   23 WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPL--FVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVF  100 (1202)
T ss_pred             EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCe--EEecCCccEEEEEecccceehhhhccccceeEEee
Confidence            5778888999999999999999999999999999999997655  99999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccee-EeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCc
Q 004214           82 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG  160 (768)
Q Consensus        82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  160 (768)
                      |++.-.+++|+|.|.+|+||++.+++++..+.++.. +-+..|.|...                       .+++++-|-
T Consensus       101 FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED-----------------------lIVSaSLDQ  157 (1202)
T KOG0292|consen  101 FHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-----------------------LIVSASLDQ  157 (1202)
T ss_pred             ccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc-----------------------eEEEecccc
Confidence            999999999999999999999999999999987765 78888888665                       899999999


Q ss_pred             EEEEEEcCCceeeeecCC-------------------ceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeecc
Q 004214          161 IVRMWNADSACLYEQKSS-------------------DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE  221 (768)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~  221 (768)
                      +||+||+.+-........                   +.........+.+++..++|.|.-..+++++.|..+++|....
T Consensus       158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne  237 (1202)
T KOG0292|consen  158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE  237 (1202)
T ss_pred             eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc
Confidence            999999976622211111                   2334455678889999999999999999999999999999876


Q ss_pred             CcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEE
Q 004214          222 VPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV  301 (768)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~  301 (768)
                      .     .........||.+.|.++.|.| ..+++++.+.|+.|++||+.....+.++....+...+++  ..|..+ +++
T Consensus       238 t-----KaWEvDtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~la--ahP~lN-LfA  308 (1202)
T KOG0292|consen  238 T-----KAWEVDTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILA--AHPELN-LFA  308 (1202)
T ss_pred             c-----cceeehhhhcccCCcceEEecC-ccceeEecCCCccEEEEecccccceeeeeccCCeEEEEE--ecCCcc-eee
Confidence            5     2344567889999999999985 677999999999999999999999999988888888886  555444 244


Q ss_pred             EEeCCCeEEEEeCCCce----------------EEE-------------eeec---ccCcEEEEEEecCCCcEEEEEeC-
Q 004214          302 TGSKDNSVRLWDSESRC----------------CVG-------------VGTG---HMGAVGAVAFSKKLQNFLVSGSS-  348 (768)
Q Consensus       302 ~~~~dg~i~iwd~~~~~----------------~~~-------------~~~~---~~~~v~~~~~~~~~~~~l~s~~~-  348 (768)
                      + +.|+-+.+|.++...                .+.             .+..   ...++.++.++|.....+++... 
T Consensus       309 A-gHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~  387 (1202)
T KOG0292|consen  309 A-GHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLD  387 (1202)
T ss_pred             e-ecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccC
Confidence            4 445555566544211                111             1111   12567788888876645554433 


Q ss_pred             CCeEEEEeCCC
Q 004214          349 DHTIKVWSFDG  359 (768)
Q Consensus       349 dg~i~iwd~~~  359 (768)
                      .|.-.++.+..
T Consensus       388 n~~y~L~~ipk  398 (1202)
T KOG0292|consen  388 NGEYELVQIPK  398 (1202)
T ss_pred             CCeEEEEEecC
Confidence            45555565543

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5e-33  Score=241.63  Aligned_cols=284  Identities=19%  Similarity=0.287  Sum_probs=250.0

Q ss_pred             eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEE
Q 004214          233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW  312 (768)
Q Consensus       233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iw  312 (768)
                      ..+.++.+.|..+.|+. ++++.+++++|.+|++|+...+.+++++.+|...|..++  ...++.. +++|+.|..+.+|
T Consensus        11 ~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~--~s~Dnsk-f~s~GgDk~v~vw   86 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAA--LSSDNSK-FASCGGDKAVQVW   86 (307)
T ss_pred             eeecccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeecc--ccccccc-cccCCCCceEEEE
Confidence            45667889999999984 889999999999999999999999999999999999987  5566665 9999999999999


Q ss_pred             eCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214          313 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND  392 (768)
Q Consensus       313 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  392 (768)
                      |+.+|+..+.+.+|.+.|..+.|+.+.. .+++|+.|.++++||.+..        ...+.+++......|.++.++  +
T Consensus        87 DV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~--------s~ePiQildea~D~V~Si~v~--~  155 (307)
T KOG0316|consen   87 DVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSR--------SFEPIQILDEAKDGVSSIDVA--E  155 (307)
T ss_pred             EcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccC--------CCCccchhhhhcCceeEEEec--c
Confidence            9999999999999999999999999854 8999999999999999865        444566666677888888875  6


Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcE--EEE
Q 004214          393 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV--LRA  470 (768)
Q Consensus       393 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v--~~~  470 (768)
                      ..|++|+.||+++.||++.+....-.-  ..||+|++|+++++..++++.|+++++.|-.+|++++.+.||...-  ..+
T Consensus       156 heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc  233 (307)
T KOG0316|consen  156 HEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC  233 (307)
T ss_pred             cEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence            789999999999999999998776554  4589999999999999999999999999999999999999998754  456


Q ss_pred             EEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCc-EEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214          471 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK-IWALAVGKKTEMFATGGSDALVNLWH  534 (768)
Q Consensus       471 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~s~~~~~l~s~~~dg~v~vw~  534 (768)
                      +++.....+++|++||.|++||+.....+..+..|... |.+++++|.-..|++++..+ +..|.
T Consensus       234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~~  297 (307)
T KOG0316|consen  234 CLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFWY  297 (307)
T ss_pred             eecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eecee
Confidence            67777889999999999999999999999999988877 89999999888787776444 56664

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.2e-32  Score=291.06  Aligned_cols=292  Identities=33%  Similarity=0.533  Sum_probs=253.9

Q ss_pred             EEEEcC-CCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe--eEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEE
Q 004214           24 HYFKGH-KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL  100 (768)
Q Consensus        24 ~~l~gh-~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~--~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~v  100 (768)
                      ..+.+| ...|+++.|+|+|+.  +++++.|+.+++|++.+++  ....+.+|...|.+++|+|+++++++++.|++|++
T Consensus       152 ~~~~~~~~~sv~~~~fs~~g~~--l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri  229 (456)
T KOG0266|consen  152 QTLAGHECPSVTCVDFSPDGRA--LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI  229 (456)
T ss_pred             eeecccccCceEEEEEcCCCCe--EEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence            444444 889999999999998  9999999999999998888  78888999999999999999999999999999999


Q ss_pred             EECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCce
Q 004214          101 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV  180 (768)
Q Consensus       101 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~  180 (768)
                      ||+...                                                                          
T Consensus       230 wd~~~~--------------------------------------------------------------------------  235 (456)
T KOG0266|consen  230 WDLKDD--------------------------------------------------------------------------  235 (456)
T ss_pred             eeccCC--------------------------------------------------------------------------
Confidence            998321                                                                          


Q ss_pred             eecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC
Q 004214          181 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN  260 (768)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  260 (768)
                                                                                                      
T Consensus       236 --------------------------------------------------------------------------------  235 (456)
T KOG0266|consen  236 --------------------------------------------------------------------------------  235 (456)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCC
Q 004214          261 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ  340 (768)
Q Consensus       261 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  340 (768)
                                 +..++++.+|...|++++  +.+.+ .++++|+.|++|++||+.++++...+.+|.+.|++++|++++.
T Consensus       236 -----------~~~~~~l~gH~~~v~~~~--f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~  301 (456)
T KOG0266|consen  236 -----------GRNLKTLKGHSTYVTSVA--FSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN  301 (456)
T ss_pred             -----------CeEEEEecCCCCceEEEE--ecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCC
Confidence                       122336667888888887  77888 5699999999999999999999999999999999999999976


Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC--CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 004214          341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK--DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF  418 (768)
Q Consensus       341 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  418 (768)
                       ++++++.|+.|++||+..+...        .......+..  .++++.|+|++.++++++.|+.+++||+..+.....+
T Consensus       302 -~l~s~s~d~~i~vwd~~~~~~~--------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~  372 (456)
T KOG0266|consen  302 -LLVSASYDGTIRVWDLETGSKL--------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY  372 (456)
T ss_pred             -EEEEcCCCccEEEEECCCCcee--------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence             7899999999999999865311        1223333333  5999999999999999999999999999999999999


Q ss_pred             eccCCC---eEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC-CCcEEEEEEEeCCCEEEEEe--CCCcEEEEE
Q 004214          419 RGHKRG---IWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH-TSSVLRASFLTRGAQIVSCG--ADGLVKLWT  492 (768)
Q Consensus       419 ~~~~~~---v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd  492 (768)
                      .+|...   +.+...++.+.++++|+.|+.|++||+.++..+..+.+| ...+..+.++|..+++++++  .|+.+++|.
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~  452 (456)
T KOG0266|consen  373 TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK  452 (456)
T ss_pred             cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence            998875   444556788999999999999999999999999999999 89999999999999999998  688999997


Q ss_pred             CC
Q 004214          493 VR  494 (768)
Q Consensus       493 ~~  494 (768)
                      ..
T Consensus       453 ~~  454 (456)
T KOG0266|consen  453 YD  454 (456)
T ss_pred             CC
Confidence            53

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=6.5e-32  Score=308.35  Aligned_cols=312  Identities=17%  Similarity=0.263  Sum_probs=253.8

Q ss_pred             CCcEEEEECCCCeeEEEe-----cCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCC
Q 004214           53 DATVRVWDLLAKKCVATL-----DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPG  127 (768)
Q Consensus        53 dg~I~iWd~~~~~~~~~l-----~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~  127 (768)
                      +|.+++|+..+.+....+     ..|.+.|.+++|+|+|++|+++|.|+.|++|++......                 +
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~-----------------~  519 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD-----------------G  519 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc-----------------c
Confidence            678999998876665443     358999999999999999999999999999997541100                 0


Q ss_pred             CCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEE
Q 004214          128 SAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLC  207 (768)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  207 (768)
                      ...                                                                             
T Consensus       520 ~~~-----------------------------------------------------------------------------  522 (793)
T PLN00181        520 RDI-----------------------------------------------------------------------------  522 (793)
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            000                                                                             


Q ss_pred             EEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEE
Q 004214          208 VTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLC  287 (768)
Q Consensus       208 ~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~  287 (768)
                                          .. ..... .+...+.+++|.+..+.++++++.||.|++||+.+++.+..+.+|...|.+
T Consensus       523 --------------------~~-~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~  580 (793)
T PLN00181        523 --------------------HY-PVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWS  580 (793)
T ss_pred             --------------------cc-ceEEe-cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEE
Confidence                                00 00000 113457788888878889999999999999999999999999999999999


Q ss_pred             EeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccc
Q 004214          288 LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP  367 (768)
Q Consensus       288 l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  367 (768)
                      ++  +.+.++.+|++|+.||.|++||+.++..+..+..+ ..+.++.|++....++++|+.||.|++||++...      
T Consensus       581 l~--~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~------  651 (793)
T PLN00181        581 ID--YSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK------  651 (793)
T ss_pred             EE--EcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC------
Confidence            98  76655556999999999999999999888887755 6799999976556689999999999999997431      


Q ss_pred             cccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC------CceEEEEeccCCCeEEEEEccCCCEEEEee
Q 004214          368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD------LVSVVTFRGHKRGIWSVEFSPVDQVVITAS  441 (768)
Q Consensus       368 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~  441 (768)
                         .......+|...|.++.|. ++.++++++.|++|++||+..      ..++..+.+|...+.+++|+|++.+|++|+
T Consensus       652 ---~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs  727 (793)
T PLN00181        652 ---LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS  727 (793)
T ss_pred             ---ccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence               1234456899999999997 678999999999999999974      356788999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCceeEEe-------------ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214          442 GDKTIKIWSISDGSCLKTF-------------EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       442 ~d~~i~iwd~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  493 (768)
                      .|+.|++|+.....++..+             ..|...|.+++|+|++..|++|+.||.|+||++
T Consensus       728 ~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        728 ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            9999999998766544322             234567999999999999999999999999986

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.3e-32  Score=290.90  Aligned_cols=283  Identities=27%  Similarity=0.482  Sum_probs=256.7

Q ss_pred             CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce--eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC-C
Q 004214          239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS-E  315 (768)
Q Consensus       239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~-~  315 (768)
                      ...+.++.|++ ++..++.++.++.+++|+..+..  ....+.+|...|.+++  +++++.. +++++.|++|++||+ .
T Consensus       159 ~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~--fs~d~~~-l~s~s~D~tiriwd~~~  234 (456)
T KOG0266|consen  159 CPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVA--FSPDGSY-LLSGSDDKTLRIWDLKD  234 (456)
T ss_pred             cCceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeE--ECCCCcE-EEEecCCceEEEeeccC
Confidence            66788888885 66679999999999999998877  7777899999999998  7777775 999999999999999 5


Q ss_pred             CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE
Q 004214          316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV  395 (768)
Q Consensus       316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  395 (768)
                      .+..+.++.+|...|++++|+|++ +++++|+.|++|++||++.          ......+.+|...|++++|++++++|
T Consensus       235 ~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~----------~~~~~~l~~hs~~is~~~f~~d~~~l  303 (456)
T KOG0266|consen  235 DGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRT----------GECVRKLKGHSDGISGLAFSPDGNLL  303 (456)
T ss_pred             CCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccC----------CeEEEeeeccCCceEEEEECCCCCEE
Confidence            668999999999999999999998 6999999999999999984          45788889999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCc--eEEEEeccCCC--eEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcE---E
Q 004214          396 CTGSQDRTACVWRLPDLV--SVVTFRGHKRG--IWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV---L  468 (768)
Q Consensus       396 ~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v---~  468 (768)
                      ++++.|+.|++||+.++.  +...+.++..+  ++++.|+|++.++++++.|+.+++||+..+.++..+.+|...+   .
T Consensus       304 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~  383 (456)
T KOG0266|consen  304 VSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIF  383 (456)
T ss_pred             EEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEe
Confidence            999999999999999998  56777776665  9999999999999999999999999999999999999998853   3


Q ss_pred             EEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccC-CCcEEEEEEcCCCCEEEEEe--CCCcEEEEEcC
Q 004214          469 RASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH-EDKIWALAVGKKTEMFATGG--SDALVNLWHDS  536 (768)
Q Consensus       469 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~s~~--~dg~v~vw~~~  536 (768)
                      +..+++.+.++++|+.|+.|++|++.++..+..+.+| ...+..++++|..+++++++  .|+.+++|...
T Consensus       384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  384 SPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             cccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            4455778999999999999999999999999999999 89999999999999999998  79999999754

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=2.1e-31  Score=266.07  Aligned_cols=506  Identities=16%  Similarity=0.253  Sum_probs=364.2

Q ss_pred             EEEeecCCCcEEEEECCCC--EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe--eEEEecCccc--
Q 004214            2 FALLEGADRKVLVWDVDGG--FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFS--   75 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~--~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~--~~~~l~~h~~--   75 (768)
                      ++++|+.||.|++|.+...  .++..+.||...+.|+.=.+  .  .....+.|+++.+||.+..+  +...+.-..+  
T Consensus        71 ~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~--~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~  146 (764)
T KOG1063|consen   71 EMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARS--S--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEA  146 (764)
T ss_pred             eEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeee--e--EEEeeccCceEEEeecCCCceeeehheehhhhhH
Confidence            6899999999999999733  35567777666665554332  2  13333789999999996555  3333332222  


Q ss_pred             eeEEEEEcC-CCCEEE-EEeCCCeEEEEECCCCe--eeeeeecce-eEeeEEecCCCCCccccccccchhhhhcccCCcc
Q 004214           76 RVTSMAITS-DGSTLI-SAGRDKVVNLWDLRDYS--CKLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE  150 (768)
Q Consensus        76 ~V~~l~fs~-d~~~L~-s~~~dg~i~vWd~~~~~--~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (768)
                      -..|+++.| ++.+|. .++.+..|.++.-.+.+  .+..+..+. -+..+.|...+.                    ..
T Consensus       147 ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~--------------------~~  206 (764)
T KOG1063|consen  147 IPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG--------------------DD  206 (764)
T ss_pred             hhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC--------------------Cc
Confidence            334666667 445544 45566677777655433  334444443 366776665543                    24


Q ss_pred             eEEEEeeCCcEEEEEEcCCceeee----ecC------C-----------ceeecccccCcccceeEEEEccCCCceEEEE
Q 004214          151 IHFITVGERGIVRMWNADSACLYE----QKS------S-----------DVTISFEMDDSKRGFTAATVLPSNQGLLCVT  209 (768)
Q Consensus       151 ~~~~~~~~~g~i~iwd~~~~~~~~----~~~------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  209 (768)
                      .++++++.|..||||.+.-+....    ...      .           ......-...+.+=+.++.+.|.+..|++++
T Consensus       207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSAS  286 (764)
T KOG1063|consen  207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSAS  286 (764)
T ss_pred             EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecc
Confidence            489999999999999875442111    000      0           0011112335556677888999999999999


Q ss_pred             ecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC---ceeeeeeeCCccceE
Q 004214          210 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS---MSCSYVLAGHSEIVL  286 (768)
Q Consensus       210 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~v~  286 (768)
                      .|.++.+|...................|.........|++ +++.+++-+..|..++|....   ......+.||.+.|.
T Consensus       287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~  365 (764)
T KOG1063|consen  287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVK  365 (764)
T ss_pred             cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCcEEEEeccCccceeeccccccccccce
Confidence            9999999998876544444444444556666788888885 667888888889999998332   133445789999999


Q ss_pred             EEeeeeecCCCEEEEEEeCCCeEEEEeCCCc----eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCC--
Q 004214          287 CLDTCALSSGKILIVTGSKDNSVRLWDSESR----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL--  360 (768)
Q Consensus       287 ~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--  360 (768)
                      .++  +.|.|.. +++.+.|-+-|+|-.-..    -.+...+-|...++|+++-+. +..+++|.....+++|+.+..  
T Consensus       366 dv~--W~psGef-lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv  441 (764)
T KOG1063|consen  366 DVD--WDPSGEF-LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFV  441 (764)
T ss_pred             eee--ecCCCCE-EEEeccccceeeecccccccceeeecccccccccceeeehccC-CceeeecccceeeeeecCcHHHH
Confidence            998  7788886 889999999999865421    233445568889999999885 446999999999999986521  


Q ss_pred             ------------CC-C-----------------C--------------ccc--------------------cccceeeEe
Q 004214          361 ------------SD-D-----------------A--------------EQP--------------------MNLKAKAVV  376 (768)
Q Consensus       361 ------------~~-~-----------------~--------------~~~--------------------~~~~~~~~~  376 (768)
                                  .. .                 .              +.+                    ........+
T Consensus       442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL  521 (764)
T KOG1063|consen  442 KSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL  521 (764)
T ss_pred             HHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh
Confidence                        00 0                 0              000                    001112234


Q ss_pred             eccCCCeEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214          377 AAHGKDINSLAVAPNDSLVCTGSQDR-----TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI  451 (768)
Q Consensus       377 ~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~  451 (768)
                      .+|...|.+++.+|+++++|+++...     .|++|+..+......+.+|.-.|+.++|||||++|++.+.|+++.+|..
T Consensus       522 YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~  601 (764)
T KOG1063|consen  522 YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV  601 (764)
T ss_pred             ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence            67999999999999999999998654     5999999999999999999999999999999999999999999999997


Q ss_pred             CCCc----eeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC--eEEEE--eccCCCcEEEEEEcCC-----C
Q 004214          452 SDGS----CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG--ECIAT--YDKHEDKIWALAVGKK-----T  518 (768)
Q Consensus       452 ~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~--~~~~~~~v~~l~~s~~-----~  518 (768)
                      ....    .....+.|..-|.++.|+|++.+++|++.|.+|++|.....  +.+..  ...+...|+++++.|-     +
T Consensus       602 ~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~  681 (764)
T KOG1063|consen  602 QEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKG  681 (764)
T ss_pred             ecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccccccc
Confidence            5432    22336789999999999999999999999999999998877  44443  2348889999998772     3


Q ss_pred             CEEEEEeCCCcEEEEEcC
Q 004214          519 EMFATGGSDALVNLWHDS  536 (768)
Q Consensus       519 ~~l~s~~~dg~v~vw~~~  536 (768)
                      ..+++|-..|.|.+|+..
T Consensus       682 ~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  682 DVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             ceEEEEecccEEEEEecc
Confidence            377889999999999965

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=7e-34  Score=272.56  Aligned_cols=291  Identities=20%  Similarity=0.308  Sum_probs=256.6

Q ss_pred             EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC-ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214          230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS  308 (768)
Q Consensus       230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~  308 (768)
                      .......||...|.++.|++....+|++++.|+.|+||++.. +.+++++.+|..+|..+.  ++..+.. +++++.|+.
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~--~s~~g~~-fLS~sfD~~  281 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDAS--FNNCGTS-FLSASFDRF  281 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhh--ccccCCe-eeeeeccee
Confidence            345678899999999999998999999999999999999876 899999999999999997  7777776 999999999


Q ss_pred             EEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEE
Q 004214          309 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV  388 (768)
Q Consensus       309 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  388 (768)
                      |++||+++|+++..+. ....++|+.|.|++.+.+++|+.|+.|+.||++.+          +....+..|-..|..+.|
T Consensus       282 lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~----------kvvqeYd~hLg~i~~i~F  350 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG----------KVVQEYDRHLGAILDITF  350 (503)
T ss_pred             eeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch----------HHHHHHHhhhhheeeeEE
Confidence            9999999999998876 34578999999999889999999999999999954          355566778899999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEeCCCCceEEEEec-cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC---ceeEEeecCC
Q 004214          389 APNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG---SCLKTFEGHT  464 (768)
Q Consensus       389 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~---~~~~~~~~~~  464 (768)
                      -++|+.+++.+.|++++||+.+...++..... +.....++..+|+++++++-+.|+.|.+|.+...   ..-+.|+||.
T Consensus       351 ~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~  430 (503)
T KOG0282|consen  351 VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS  430 (503)
T ss_pred             ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence            99999999999999999999988766654332 3345678999999999999999999999997543   3446677886


Q ss_pred             C--cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 004214          465 S--SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK-TEMFATGGSDALVNLWH  534 (768)
Q Consensus       465 ~--~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~-~~~l~s~~~dg~v~vw~  534 (768)
                      .  --..+.|||||.+|++|+.||.+.+||.++-+.+..+.+|..++..+.|+|. ...+||+|-||.|++|+
T Consensus       431 vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  431 VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            4  4567899999999999999999999999999999999999999999999995 56799999999999996

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=3.7e-32  Score=252.69  Aligned_cols=292  Identities=21%  Similarity=0.360  Sum_probs=246.6

Q ss_pred             ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC
Q 004214          237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES  316 (768)
Q Consensus       237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~  316 (768)
                      .|++.|.++.-.   +.++++|+.||.+++||.. |+....+.+|.+++..+++....+....|++++.|.++++|..+.
T Consensus       103 ~hdDWVSsv~~~---~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~  178 (423)
T KOG0313|consen  103 LHDDWVSSVKGA---SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV  178 (423)
T ss_pred             cchhhhhhhccc---CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence            456666666653   6799999999999999965 677779999999999888665555556799999999999998876


Q ss_pred             ceE----EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCC---------------CccccccceeeEee
Q 004214          317 RCC----VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD---------------AEQPMNLKAKAVVA  377 (768)
Q Consensus       317 ~~~----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------~~~~~~~~~~~~~~  377 (768)
                      +..    +....||...|.++...+++. .+++|+.|.++++|+.......               ........+...+.
T Consensus       179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~  257 (423)
T KOG0313|consen  179 GENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE  257 (423)
T ss_pred             chhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence            643    233459999999999999976 7999999999999994322111               01222345677788


Q ss_pred             ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc--
Q 004214          378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS--  455 (768)
Q Consensus       378 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~--  455 (768)
                      +|..+|.++.|++ ...+++++.|.+|+.||+.++....++. ....++|+.++|..++|++|+.|..+++||.+++.  
T Consensus       258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs  335 (423)
T KOG0313|consen  258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS  335 (423)
T ss_pred             ccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCc
Confidence            9999999999998 6789999999999999999999988877 46789999999999999999999999999998763  


Q ss_pred             -eeEEeecCCCcEEEEEEEeCCC-EEEEEeCCCcEEEEECCCCe-EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 004214          456 -CLKTFEGHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTGE-CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL  532 (768)
Q Consensus       456 -~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~v  532 (768)
                       ...+|.+|.+.|.++.|+|... +|++|+.|+++++||+++.. ++..+.+|.+.|.++.|. ++..+++||.|..|++
T Consensus       336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i  414 (423)
T KOG0313|consen  336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRI  414 (423)
T ss_pred             eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEE
Confidence             5578899999999999999655 67899999999999999988 999999999999999997 6779999999999999


Q ss_pred             EEcC
Q 004214          533 WHDS  536 (768)
Q Consensus       533 w~~~  536 (768)
                      +.-.
T Consensus       415 ~~~~  418 (423)
T KOG0313|consen  415 FKGS  418 (423)
T ss_pred             eccc
Confidence            8643

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=3.2e-33  Score=244.88  Aligned_cols=291  Identities=20%  Similarity=0.329  Sum_probs=260.3

Q ss_pred             eeecccCCceeEEEEec--CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214          233 KRLVGYNEEILDLKFLG--EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR  310 (768)
Q Consensus       233 ~~~~~~~~~i~~~~~~~--~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~  310 (768)
                      ....||..+|.+++|++  +++-+|++++.|+.-.+-+-.++.-+.++.+|.+.|....   ...+....++++.|-+-+
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~---l~~na~~aasaaadftak   84 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSAT---LNKNATRAASAAADFTAK   84 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeee---cCchhhhhhhhcccchhh
Confidence            45578999999999987  7888999999999999999999999999999999998874   334444588899999999


Q ss_pred             EEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214          311 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP  390 (768)
Q Consensus       311 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  390 (768)
                      +||.-+|..+..+. |..-|.+++|+.+.. +|++|+.+..+++||++....         +...+.+|...|..+.|..
T Consensus        85 vw~a~tgdelhsf~-hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~A---------pp~E~~ghtg~Ir~v~wc~  153 (334)
T KOG0278|consen   85 VWDAVTGDELHSFE-HKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKA---------PPKEISGHTGGIRTVLWCH  153 (334)
T ss_pred             hhhhhhhhhhhhhh-hhheeeeEEecccch-hhhccchHHHhhhhhccCCCC---------CchhhcCCCCcceeEEEec
Confidence            99999998888875 889999999999955 799999999999999985432         3445678999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEE
Q 004214          391 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA  470 (768)
Q Consensus       391 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  470 (768)
                      ..+.|++++.|++|++||.+++..+.++. ...+|+++.++++|++|.++.. +.|.+||..+..+++.+. ....|.+.
T Consensus       154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~g-ssV~Fwdaksf~~lKs~k-~P~nV~SA  230 (334)
T KOG0278|consen  154 EDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYG-SSVKFWDAKSFGLLKSYK-MPCNVESA  230 (334)
T ss_pred             cCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecC-ceeEEeccccccceeecc-Cccccccc
Confidence            99999999999999999999999999988 6789999999999998888765 789999999999999887 55678999


Q ss_pred             EEEeCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214          471 SFLTRGAQIVSCGADGLVKLWTVRTGECIATY-DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE  540 (768)
Q Consensus       471 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~  540 (768)
                      .++|+...+++|+.|+.++.||..+|+.+..+ ++|.++|.|+.|+|+|...++|+.||+|++|....++.
T Consensus       231 SL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  231 SLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             cccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            99999999999999999999999999999986 89999999999999999999999999999999877654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=5.9e-31  Score=300.46  Aligned_cols=286  Identities=18%  Similarity=0.254  Sum_probs=238.2

Q ss_pred             eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce--------eeeeeeCCccceEEEeeeeecCCCEEEEEEeC
Q 004214          234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--------CSYVLAGHSEIVLCLDTCALSSGKILIVTGSK  305 (768)
Q Consensus       234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--------~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~  305 (768)
                      .+.+|.+.|.+++|++ ++.++++|+.|+.|++|+.....        ....+. +...+.++.  +.+..+.++++++.
T Consensus       478 ~~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~--~~~~~~~~las~~~  553 (793)
T PLN00181        478 DLLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGIC--WNSYIKSQVASSNF  553 (793)
T ss_pred             cccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEE--eccCCCCEEEEEeC
Confidence            3456888999999985 77899999999999999975421        111222 345677776  55555556999999


Q ss_pred             CCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214          306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS  385 (768)
Q Consensus       306 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  385 (768)
                      ||.|++||+.+++.+..+.+|.+.|++++|+|....+|++|+.||+|++||+....          ...... +...+.+
T Consensus       554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~----------~~~~~~-~~~~v~~  622 (793)
T PLN00181        554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV----------SIGTIK-TKANICC  622 (793)
T ss_pred             CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc----------EEEEEe-cCCCeEE
Confidence            99999999999999999999999999999998545689999999999999997432          222333 3357899


Q ss_pred             EEEc-cCCCEEEEEeCCCcEEEEeCCCCc-eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC------Ccee
Q 004214          386 LAVA-PNDSLVCTGSQDRTACVWRLPDLV-SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD------GSCL  457 (768)
Q Consensus       386 ~~~s-~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~------~~~~  457 (768)
                      +.|+ +++.+|++|+.||.|++||+++.. .+..+.+|...|.++.|. ++.+|++++.|++|++||+..      +.++
T Consensus       623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l  701 (793)
T PLN00181        623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPL  701 (793)
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcce
Confidence            9995 579999999999999999998765 567788999999999997 688999999999999999974      3678


Q ss_pred             EEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEe-------------ccCCCcEEEEEEcCCCCEEEEE
Q 004214          458 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY-------------DKHEDKIWALAVGKKTEMFATG  524 (768)
Q Consensus       458 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------------~~~~~~v~~l~~s~~~~~l~s~  524 (768)
                      ..+.+|...+..++|+|++.+|++|+.||.|++|+.....++..+             ..|...|.+++|+|++..|++|
T Consensus       702 ~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~  781 (793)
T PLN00181        702 HSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAA  781 (793)
T ss_pred             EEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEe
Confidence            899999999999999999999999999999999998766544322             2345679999999999999999


Q ss_pred             eCCCcEEEEEc
Q 004214          525 GSDALVNLWHD  535 (768)
Q Consensus       525 ~~dg~v~vw~~  535 (768)
                      +.||.|+||++
T Consensus       782 ~~dG~I~i~~~  792 (793)
T PLN00181        782 NSTGNIKILEM  792 (793)
T ss_pred             cCCCcEEEEec
Confidence            99999999986

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4e-32  Score=254.71  Aligned_cols=291  Identities=21%  Similarity=0.317  Sum_probs=246.9

Q ss_pred             EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc---eeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC
Q 004214          231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM---SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN  307 (768)
Q Consensus       231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg  307 (768)
                      ....+..|.++|.-+.|++ ++++||+++.|.+..+|.+...   +...++.+|..+|..+.  ++|++++ +++++.+.
T Consensus       216 t~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~--wSPDdry-LlaCg~~e  291 (519)
T KOG0293|consen  216 TWQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIM--WSPDDRY-LLACGFDE  291 (519)
T ss_pred             hhhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEE--ECCCCCe-EEecCchH
Confidence            3455778899999999985 8999999999999999987654   34678899999999997  7787776 88888888


Q ss_pred             eEEEEeCCCceEEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEE
Q 004214          308 SVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL  386 (768)
Q Consensus       308 ~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  386 (768)
                      .+.+||..+|.....+. ++...+.+++|.|||. .+++|+.|+++..||+++....     ....     .....|.++
T Consensus       292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~~~-----~W~g-----vr~~~v~dl  360 (519)
T KOG0293|consen  292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNILG-----NWEG-----VRDPKVHDL  360 (519)
T ss_pred             heeeccCCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcchhh-----cccc-----cccceeEEE
Confidence            89999999998877665 3567899999999987 5999999999999999864211     1111     112458899


Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCc
Q 004214          387 AVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS  466 (768)
Q Consensus       387 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~  466 (768)
                      ++.+||+++++.+.|..|++|+.++......+. ...+|+++++|.+++++++.-.+..+++||+.....++.+.||...
T Consensus       361 ait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~  439 (519)
T KOG0293|consen  361 AITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQG  439 (519)
T ss_pred             EEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccccc
Confidence            999999999999999999999998766554333 5678999999999999999999999999999999999999999753


Q ss_pred             --EEEEEEEe-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcCC
Q 004214          467 --VLRASFLT-RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK-TEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       467 --v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~-~~~l~s~~~dg~v~vw~~~~  537 (768)
                        +..-+|-. +..++++|++|+.|+||+..+|+++..+.+|...|++++|+|. ..++|++|.||+|+||....
T Consensus       440 ~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  440 HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence              55556654 4579999999999999999999999999999999999999995 56899999999999998764

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-31  Score=231.52  Aligned_cols=283  Identities=21%  Similarity=0.306  Sum_probs=239.8

Q ss_pred             EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214           23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD  102 (768)
Q Consensus        23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd  102 (768)
                      .+.+.+|+++|.++.|+-||++  .++++.|.+|++||...|.+++++.+|...|..++.+.|+..+++||.|..+.+||
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY--~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNY--CLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             ceeecccccceEEEEEccCCCE--EEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            5778899999999999999998  99999999999999999999999999999999999999999999999999888888


Q ss_pred             CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214          103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI  182 (768)
Q Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~  182 (768)
                      +.+|+...                                                                        
T Consensus        88 V~TGkv~R------------------------------------------------------------------------   95 (307)
T KOG0316|consen   88 VNTGKVDR------------------------------------------------------------------------   95 (307)
T ss_pred             cccCeeee------------------------------------------------------------------------
Confidence            87765332                                                                        


Q ss_pred             cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214          183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE  262 (768)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~  262 (768)
                                                                                                      
T Consensus        96 --------------------------------------------------------------------------------   95 (307)
T KOG0316|consen   96 --------------------------------------------------------------------------------   95 (307)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC--ceEEEeeecccCcEEEEEEecCCC
Q 004214          263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES--RCCVGVGTGHMGAVGAVAFSKKLQ  340 (768)
Q Consensus       263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~  340 (768)
                                    .+.+|...|..+.  +. .....+++|+.|.++++||.++  .++++.+......|.++..+..  
T Consensus        96 --------------r~rgH~aqVNtV~--fN-eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h--  156 (307)
T KOG0316|consen   96 --------------RFRGHLAQVNTVR--FN-EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH--  156 (307)
T ss_pred             --------------ecccccceeeEEE--ec-CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc--
Confidence                          3344555555553  33 3334599999999999999875  5678888888899999998754  


Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec
Q 004214          341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG  420 (768)
Q Consensus       341 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  420 (768)
                       .+++|+.||+++.||++.+..            .......+|+++.|+++++..++++.|+++++.|-.+++.+..++|
T Consensus       157 -eIvaGS~DGtvRtydiR~G~l------------~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG  223 (307)
T KOG0316|consen  157 -EIVAGSVDGTVRTYDIRKGTL------------SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG  223 (307)
T ss_pred             -EEEeeccCCcEEEEEeeccee------------ehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc
Confidence             699999999999999986532            1233457899999999999999999999999999999999999999


Q ss_pred             cCCCe--EEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCc-EEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214          421 HKRGI--WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS-VLRASFLTRGAQIVSCGADGLVKLWT  492 (768)
Q Consensus       421 ~~~~v--~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~dg~i~iwd  492 (768)
                      |...-  ...+++.....+++|++||.|.+||+.+...+..+..|... ++++.+.|.-..|+++... .+..|-
T Consensus       224 hkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~~  297 (307)
T KOG0316|consen  224 HKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFWY  297 (307)
T ss_pred             cccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceecee
Confidence            98753  45567777899999999999999999999999999988887 8999999988777777643 455564

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2e-28  Score=244.69  Aligned_cols=487  Identities=14%  Similarity=0.184  Sum_probs=352.3

Q ss_pred             EEeecCCCcEEEEECCCCE-EEEEEEcCC-CcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEE
Q 004214            3 ALLEGADRKVLVWDVDGGF-CTHYFKGHK-GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM   80 (768)
Q Consensus         3 latg~~dg~i~vwd~~~~~-~~~~l~gh~-~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l   80 (768)
                      ||.+-++|.|.+|++..+- +...+.||. ..|.+++|++.++   |++.+.+|.|.-||+.+++++..+....+.|+++
T Consensus        40 lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsi  116 (691)
T KOG2048|consen   40 LAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSI  116 (691)
T ss_pred             eeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCe---EEeecCCceEEEEecccCceeEEecCCCcceeEE
Confidence            7889999999999997664 445677764 5899999996544   9999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeec---ceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEee
Q 004214           81 AITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT---YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG  157 (768)
Q Consensus        81 ~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (768)
                      +.+|.+..++.++.||.+...+...++.......   ...+.++.|.|++.                       .+++|+
T Consensus       117 ai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~-----------------------~i~~Gs  173 (691)
T KOG2048|consen  117 AINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT-----------------------KIAGGS  173 (691)
T ss_pred             EeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc-----------------------EEEecc
Confidence            9999999999999999999999888887665543   34578888888875                       799999


Q ss_pred             CCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecc
Q 004214          158 ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG  237 (768)
Q Consensus       158 ~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~  237 (768)
                      .||.|++||...+..........   .........+.....+-....++++.+.|.+.+|+.....       +......
T Consensus       174 ~Dg~Iriwd~~~~~t~~~~~~~~---d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT-------LiqS~~~  243 (691)
T KOG2048|consen  174 IDGVIRIWDVKSGQTLHIITMQL---DRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT-------LIQSHSC  243 (691)
T ss_pred             cCceEEEEEcCCCceEEEeeecc---cccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc-------hhhhhhh
Confidence            99999999999984332110000   0001111222333333478889999999999999987553       4456667


Q ss_pred             cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee----eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214          238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC----SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD  313 (768)
Q Consensus       238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd  313 (768)
                      |...|.+++.. ++++++.+++.|+.|.-|...+...    ......|...+.+++  ....   .+++|+.|+.+.+-.
T Consensus       244 h~adVl~Lav~-~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~a--v~~~---~l~sgG~d~~l~i~~  317 (691)
T KOG2048|consen  244 HDADVLALAVA-DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMA--VIEN---ALISGGRDFTLAICS  317 (691)
T ss_pred             hhcceeEEEEc-CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeee--eecc---eEEecceeeEEEEcc
Confidence            88999999987 4778999999999999998876643    223467888999987  5444   599999999988875


Q ss_pred             CCCceEEEeeecccC-cEEE-EEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214          314 SESRCCVGVGTGHMG-AVGA-VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN  391 (768)
Q Consensus       314 ~~~~~~~~~~~~~~~-~v~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  391 (768)
                      .......... .+.. +-.+ +...|  ..+++.--.+..+.+|.+.......+.... ............|.+.++||+
T Consensus       318 s~~~~~~~h~-~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~-~Llkl~~k~~~nIs~~aiSPd  393 (691)
T KOG2048|consen  318 SREFKNMDHR-QKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEYNYI-HLLKLFTKEKENISCAAISPD  393 (691)
T ss_pred             ccccCchhhh-ccccccccceeecCc--cceEEEEeccccccceeccCcccccccChh-hheeeecCCccceeeeccCCC
Confidence            5442111100 0110 0011 12223  234555555677788877655332222211 222333344567999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEEe-----ccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCc--eeEEee--
Q 004214          392 DSLVCTGSQDRTACVWRLPDLVSVVTFR-----GHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGS--CLKTFE--  461 (768)
Q Consensus       392 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~--~~~~~~--  461 (768)
                      |++++.++- ...++|.+.....+....     ....+...+.|+-+++.++.++ .+..+.++++.+..  .+..+.  
T Consensus       394 g~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~  472 (691)
T KOG2048|consen  394 GNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ  472 (691)
T ss_pred             CCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc
Confidence            999999875 467888876532222211     2234677888998888777777 67788888876543  333332  


Q ss_pred             cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcC
Q 004214          462 GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK-KTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       462 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~s~~~dg~v~vw~~~  536 (768)
                      +...+|..+..+|+|+||++.+.+|.|.+|++++.+.-.........|++++++| +...|+.+..++.+.-|+++
T Consensus       473 ~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~  548 (691)
T KOG2048|consen  473 AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIE  548 (691)
T ss_pred             cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecc
Confidence            3557899999999999999999999999999999876665545668999999995 66789999999999999984

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-31  Score=233.71  Aligned_cols=281  Identities=21%  Similarity=0.289  Sum_probs=237.6

Q ss_pred             eEEEEecCCCCEEEEEeC-------CCcEEEEECCCceeeeeee--CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214          243 LDLKFLGEEEQYLAVATN-------IEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD  313 (768)
Q Consensus       243 ~~~~~~~~~~~~l~~~~~-------~~~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd  313 (768)
                      .++.|+|--+++||+++.       .|.+.|.++....-+....  .-.+.+..++  +++.....+++++.||++++||
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~--Wse~~e~~~~~a~GDGSLrl~d   89 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVA--WSENHENQVIAASGDGSLRLFD   89 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEee--ecCCCcceEEEEecCceEEEec
Confidence            577888877778877653       5889999986444443332  3456677777  5566666799999999999999


Q ss_pred             CC-CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-C
Q 004214          314 SE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-N  391 (768)
Q Consensus       314 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~  391 (768)
                      +. ...++..++.|...|.++.|++..+..++++++|++|++|+...          .....++.+|...|...+|+| .
T Consensus        90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r----------~~Sv~Tf~gh~~~Iy~a~~sp~~  159 (311)
T KOG0277|consen   90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR----------PNSVQTFNGHNSCIYQAAFSPHI  159 (311)
T ss_pred             cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC----------CcceEeecCCccEEEEEecCCCC
Confidence            65 34688889999999999999998888899999999999999873          346677899999999999999 6


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEcc-CCCEEEEeeCCCcEEEEeCCCC-ceeEEeecCCCcEEE
Q 004214          392 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLR  469 (768)
Q Consensus       392 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~  469 (768)
                      ++++++++.|+++++||++.......+..|...|.|+.|+. +.++|+||+.|+.|++||+++- .++..+.+|.-.|..
T Consensus       160 ~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRk  239 (311)
T KOG0277|consen  160 PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRK  239 (311)
T ss_pred             CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEE
Confidence            88999999999999999987655555899999999999998 4678999999999999999875 578889999999999


Q ss_pred             EEEEeCC-CEEEEEeCCCcEEEEECCCC-eEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 004214          470 ASFLTRG-AQIVSCGADGLVKLWTVRTG-ECIATYDKHEDKIWALAVGK-KTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       470 ~~~s~~~-~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~-~~~~l~s~~~dg~v~vw~~  535 (768)
                      ++|||.. ..|++++.|-+++|||...+ .++.+...|..-|..+.||+ ++.++|+++-|+.++||+.
T Consensus       240 vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  240 VKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            9999964 57899999999999998854 56677788889999999998 6779999999999999984

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=7.4e-31  Score=232.63  Aligned_cols=291  Identities=22%  Similarity=0.297  Sum_probs=228.0

Q ss_pred             EEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004214           25 YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR  104 (768)
Q Consensus        25 ~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~  104 (768)
                      .++||..+++.+.|+.+|+.  |++++.|.++.||-..+|+.+.++.||.+.|+++..+.+.++|+|++.|.++++||++
T Consensus         5 ~l~GHERplTqiKyN~eGDL--lFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDL--LFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE   82 (327)
T ss_pred             ccccCccccceEEecCCCcE--EEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence            47899999999999999998  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecc
Q 004214          105 DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF  184 (768)
Q Consensus       105 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~  184 (768)
                      +|+++.+++...++..+.|++.+..+                       +...++ .                       
T Consensus        83 tGk~la~~k~~~~Vk~~~F~~~gn~~-----------------------l~~tD~-~-----------------------  115 (327)
T KOG0643|consen   83 TGKQLATWKTNSPVKRVDFSFGGNLI-----------------------LASTDK-Q-----------------------  115 (327)
T ss_pred             CCcEEEEeecCCeeEEEeeccCCcEE-----------------------EEEehh-h-----------------------
Confidence            99999999998888888888877521                       111110 0                       


Q ss_pred             cccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcE
Q 004214          185 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV  264 (768)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i  264 (768)
                                             .+.                                                  .+.|
T Consensus       116 -----------------------mg~--------------------------------------------------~~~v  122 (327)
T KOG0643|consen  116 -----------------------MGY--------------------------------------------------TCFV  122 (327)
T ss_pred             -----------------------cCc--------------------------------------------------ceEE
Confidence                                   000                                                  1223


Q ss_pred             EEEECC-------CceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc-eEEEeeecccCcEEEEEEe
Q 004214          265 QVYDLS-------SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVGTGHMGAVGAVAFS  336 (768)
Q Consensus       265 ~i~d~~-------~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~  336 (768)
                      .++|++       +..+...+..+.+.++.+-  +.+.+.. |++|..||.|.+||..++ +.+.....|...|+.+.++
T Consensus       123 ~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~--Wg~l~~~-ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s  199 (327)
T KOG0643|consen  123 SVFDIRDDSSDIDSEEPYLKIPTPDSKITSAL--WGPLGET-IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFS  199 (327)
T ss_pred             EEEEccCChhhhcccCceEEecCCccceeeee--ecccCCE-EEEecCCCcEEEEEcccCceeeechhhhcccccccccc
Confidence            333332       3334455556666666664  5666665 999999999999999997 5566667899999999999


Q ss_pred             cCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCc-------------
Q 004214          337 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT-------------  403 (768)
Q Consensus       337 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-------------  403 (768)
                      |+.. ++++++.|.+-++||+...          ....+ .....+|++.+++|....++.|+....             
T Consensus       200 ~d~T-~FiT~s~Dttakl~D~~tl----------~v~Kt-y~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKF  267 (327)
T KOG0643|consen  200 RDRT-YFITGSKDTTAKLVDVRTL----------EVLKT-YTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKF  267 (327)
T ss_pred             CCcc-eEEecccCccceeeeccce----------eeEEE-eeecccccceecccccceEEecCCceeeeeeeecccccch
Confidence            9955 8999999999999999843          22222 335678999999997666666543211             


Q ss_pred             -EEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 004214          404 -ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS  452 (768)
Q Consensus       404 -i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~  452 (768)
                       .++|++-..+.+..+++|-++|++++|+|+|+..++|++||.|++.-..
T Consensus       268 EArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  268 EARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             hhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence             1222222335677888999999999999999999999999999998654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=1.2e-27  Score=239.34  Aligned_cols=460  Identities=14%  Similarity=0.176  Sum_probs=333.5

Q ss_pred             cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe-eEEEecCcc-ceeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004214           28 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK-CVATLDKHF-SRVTSMAITSDGSTLISAGRDKVVNLWDLRD  105 (768)
Q Consensus        28 gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~-~~~~l~~h~-~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~  105 (768)
                      --...|+||||+.+.+.  ||.+-.||.|-||++..+- +...+.++. +.|.+++|+ ++..|+|.+.+|.|.-||+.+
T Consensus        23 ~~Ps~I~slA~s~kS~~--lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   23 YKPSEIVSLAYSHKSNQ--LAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT   99 (691)
T ss_pred             eeccceEEEEEeccCCc--eeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc
Confidence            35679999999998887  9999999999999998763 344566654 489999999 566899999999999999999


Q ss_pred             Ceeeeeeec-ceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecc
Q 004214          106 YSCKLTVPT-YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF  184 (768)
Q Consensus       106 ~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~  184 (768)
                      ++.+..+.. ...+.+++..|.+.                       .+..+++||.+..++...+.+.......     
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~~-----------------------~l~IgcddGvl~~~s~~p~~I~~~r~l~-----  151 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPENT-----------------------ILAIGCDDGVLYDFSIGPDKITYKRSLM-----  151 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCccc-----------------------eEEeecCCceEEEEecCCceEEEEeecc-----
Confidence            999888865 45689999998876                       7788899998888888877554333222     


Q ss_pred             cccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccce-eeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCc
Q 004214          185 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM-ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ  263 (768)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~  263 (768)
                         .....+..+.+.|++..++.|+.||.|++|+......... .....+...+...-|.++.|.  ....+++|...|.
T Consensus       152 ---rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~  226 (691)
T KOG2048|consen  152 ---RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGT  226 (691)
T ss_pred             ---cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCce
Confidence               2235677888999999999999999999999987754321 011111112234457788887  4568999999999


Q ss_pred             EEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE----EEeeecccCcEEEEEEecCC
Q 004214          264 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC----VGVGTGHMGAVGAVAFSKKL  339 (768)
Q Consensus       264 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~  339 (768)
                      |.+||...+..+.....|...|.|++  ..+++.. +++++.|+.|..|...++..    ......|...|.+++..++ 
T Consensus       227 V~FWd~~~gTLiqS~~~h~adVl~La--v~~~~d~-vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-  302 (691)
T KOG2048|consen  227 VTFWDSIFGTLIQSHSCHDADVLALA--VADNEDR-VFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-  302 (691)
T ss_pred             EEEEcccCcchhhhhhhhhcceeEEE--EcCCCCe-EEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-
Confidence            99999999999999999999999997  5555555 99999999999998776532    2234578999999999987 


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc------
Q 004214          340 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV------  413 (768)
Q Consensus       340 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~------  413 (768)
                        .+++|+.|.++.+-.........      ........+. .  -+...|.. ++..--....+.+|.+.+..      
T Consensus       303 --~l~sgG~d~~l~i~~s~~~~~~~------h~~~~~~p~~-~--~v~~a~~~-~L~~~w~~h~v~lwrlGS~~~~g~~~  370 (691)
T KOG2048|consen  303 --ALISGGRDFTLAICSSREFKNMD------HRQKNLFPAS-D--RVSVAPEN-RLLVLWKAHGVDLWRLGSVILQGEYN  370 (691)
T ss_pred             --eEEecceeeEEEEccccccCchh------hhcccccccc-c--eeecCccc-eEEEEeccccccceeccCcccccccC
Confidence              79999999999887655321100      0000000111 1  12223333 33333445667777765441      


Q ss_pred             ---eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee-----cCCCcEEEEEEEeCCCEEEEEe-C
Q 004214          414 ---SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-----GHTSSVLRASFLTRGAQIVSCG-A  484 (768)
Q Consensus       414 ---~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~s~~-~  484 (768)
                         ...-.......|.|.+.||+|++++.+.- ..++||.+...-.+....     ...-+...+.|+-+++.++.++ .
T Consensus       371 ~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~  449 (691)
T KOG2048|consen  371 YIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKN  449 (691)
T ss_pred             hhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecc
Confidence               11222224567999999999999998875 678899886533222221     2234667788999998888777 6


Q ss_pred             CCcEEEEECCCCe--EEEEec--cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214          485 DGLVKLWTVRTGE--CIATYD--KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE  540 (768)
Q Consensus       485 dg~i~iwd~~~~~--~~~~~~--~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~  540 (768)
                      +..+.+++..+..  .+..+.  +-...|..+..||+|++||+.+.+|.|.+|++.+.+.
T Consensus       450 ~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~  509 (691)
T KOG2048|consen  450 IFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLES  509 (691)
T ss_pred             cceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEccccee
Confidence            7788888776543  222221  2456799999999999999999999999999987543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.98  E-value=2e-30  Score=241.20  Aligned_cols=281  Identities=30%  Similarity=0.449  Sum_probs=230.2

Q ss_pred             CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCC---CCEEEEEeCCCeEEEEECCC
Q 004214           29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD---GSTLISAGRDKVVNLWDLRD  105 (768)
Q Consensus        29 h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d---~~~L~s~~~dg~i~vWd~~~  105 (768)
                      |.+.|.++...+  +.  +++|+.||.++|||. .|++...+.||.++|.+++|---   ...++++|.|.++++|.++.
T Consensus       104 hdDWVSsv~~~~--~~--IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~  178 (423)
T KOG0313|consen  104 HDDWVSSVKGAS--KW--ILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV  178 (423)
T ss_pred             chhhhhhhcccC--ce--EEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence            888888888874  56  999999999999997 89999999999999998887532   23589999999999987754


Q ss_pred             CeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeeccc
Q 004214          106 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE  185 (768)
Q Consensus       106 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~  185 (768)
                      +.....                                                                          
T Consensus       179 ~~~~~~--------------------------------------------------------------------------  184 (423)
T KOG0313|consen  179 GENKVK--------------------------------------------------------------------------  184 (423)
T ss_pred             chhhhh--------------------------------------------------------------------------
Confidence            321100                                                                          


Q ss_pred             ccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004214          186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ  265 (768)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~  265 (768)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (423)
T KOG0313|consen  185 --------------------------------------------------------------------------------  184 (423)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC-------------------------CceEE
Q 004214          266 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-------------------------SRCCV  320 (768)
Q Consensus       266 i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~-------------------------~~~~~  320 (768)
                              .+..-.||...|.+++  ..+++.. +++|+.|..|.+|+..                         ++.++
T Consensus       185 --------~~~~~~GHk~~V~sVs--v~~sgtr-~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~  253 (423)
T KOG0313|consen  185 --------ALKVCRGHKRSVDSVS--VDSSGTR-FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL  253 (423)
T ss_pred             --------HHhHhcccccceeEEE--ecCCCCe-EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence                    0012227888888886  6666666 9999999999999822                         13456


Q ss_pred             EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC
Q 004214          321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ  400 (768)
Q Consensus       321 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  400 (768)
                      ..+.+|..+|.++.|++.  ..++++++|.+|+.||+..+...           .....+..++++..+|..++|++|+.
T Consensus       254 vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~-----------~~~~~~ksl~~i~~~~~~~Ll~~gss  320 (423)
T KOG0313|consen  254 VTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLK-----------STLTTNKSLNCISYSPLSKLLASGSS  320 (423)
T ss_pred             EEecccccceeeEEEcCC--CceEeecccceEEEEEeecccce-----------eeeecCcceeEeecccccceeeecCC
Confidence            678899999999999984  36999999999999999865321           11224567899999999999999999


Q ss_pred             CCcEEEEeCCCCc---eEEEEeccCCCeEEEEEccCC-CEEEEeeCCCcEEEEeCCCCc-eeEEeecCCCcEEEEEEEeC
Q 004214          401 DRTACVWRLPDLV---SVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGS-CLKTFEGHTSSVLRASFLTR  475 (768)
Q Consensus       401 dg~i~i~d~~~~~---~~~~~~~~~~~v~~v~~s~~~-~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~  475 (768)
                      |..+++||.+++.   ...++.+|..-|.++.|+|.. ..|++|+.|+++++||+++.+ ++..+.+|...|.++.|. +
T Consensus       321 dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~  399 (423)
T KOG0313|consen  321 DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-E  399 (423)
T ss_pred             CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-C
Confidence            9999999998763   456788999999999999965 578899999999999999887 999999999999999997 4


Q ss_pred             CCEEEEEeCCCcEEEEEC
Q 004214          476 GAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       476 ~~~l~s~~~dg~i~iwd~  493 (768)
                      +.++++||.|.+|+|+.-
T Consensus       400 ~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  400 GGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             CceEEeccCcceEEEecc
Confidence            569999999999999864

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.98  E-value=2.7e-30  Score=270.84  Aligned_cols=281  Identities=28%  Similarity=0.486  Sum_probs=250.5

Q ss_pred             cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeee-eeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC
Q 004214          238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV-LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES  316 (768)
Q Consensus       238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~  316 (768)
                      +...+.+..+.   ..++++++.++.|.+|+..++..+.. +.+|.+.|.++.  + +.+..++++|+.|.++++||..+
T Consensus       207 ~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~--~-~~~~~~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  207 DDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLA--F-PSGGDKLVSGSTDKTERVWDCST  280 (537)
T ss_pred             Ccchhhhheee---cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEE--E-ecCCCEEEEEecCCcEEeEecCC
Confidence            44556666665   66899999999999999999999888 999999999995  3 43555699999999999999999


Q ss_pred             ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214          317 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC  396 (768)
Q Consensus       317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  396 (768)
                      +.+..++.+|.+.|.++...+.   .+++|+.|.+|++|+++++          .......+|..+|+++.++  +.+++
T Consensus       281 g~C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~----------~~l~l~~~h~~~V~~v~~~--~~~lv  345 (537)
T KOG0274|consen  281 GECTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNG----------ACLNLLRGHTGPVNCVQLD--EPLLV  345 (537)
T ss_pred             CcEEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCc----------ceEEEeccccccEEEEEec--CCEEE
Confidence            9999999999999999998775   6889999999999999843          4666677799999999998  88999


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC-ceeEEeecCCCcEEEEEEEeC
Q 004214          397 TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTR  475 (768)
Q Consensus       397 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~  475 (768)
                      +|+.||+|++||+.+++++.++.+|...|.++.+.+. ..+++|+.|++|++||+.+. +|+.++.+|..-+..+.+  .
T Consensus       346 sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~  422 (537)
T KOG0274|consen  346 SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--R  422 (537)
T ss_pred             EEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--c
Confidence            9999999999999999999999999999999988865 89999999999999999999 999999999998866554  5


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHHHHH
Q 004214          476 GAQIVSCGADGLVKLWTVRTGECIATYDK-HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEA  544 (768)
Q Consensus       476 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~  544 (768)
                      +++|++++.||+|++||..+++++.++.+ |...|+++++.  ...+++++.||.+.+||+.++......
T Consensus       423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence            77999999999999999999999999998 67899998886  567999999999999999988765543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=5.7e-30  Score=226.35  Aligned_cols=234  Identities=16%  Similarity=0.274  Sum_probs=207.8

Q ss_pred             ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC
Q 004214          235 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS  314 (768)
Q Consensus       235 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~  314 (768)
                      ..+|.+.|-.++|.++....+++++.+..|++||..++++........+.+.-.   ++|++++ ++.++.|..|...|.
T Consensus        60 ~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~---wsp~g~~-~~~~~kdD~it~id~  135 (313)
T KOG1407|consen   60 YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINIT---WSPDGEY-IAVGNKDDRITFIDA  135 (313)
T ss_pred             ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEE---EcCCCCE-EEEecCcccEEEEEe
Confidence            346777888899999999999999999999999999999998887777776655   8888887 999999999999999


Q ss_pred             CCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE
Q 004214          315 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL  394 (768)
Q Consensus       315 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  394 (768)
                      ++.+.....+ ....+.-++|+.+ +++++.....|+|.|....          .+++.....+|.....|+.|+|+|++
T Consensus       136 r~~~~~~~~~-~~~e~ne~~w~~~-nd~Fflt~GlG~v~ILsyp----------sLkpv~si~AH~snCicI~f~p~Gry  203 (313)
T KOG1407|consen  136 RTYKIVNEEQ-FKFEVNEISWNNS-NDLFFLTNGLGCVEILSYP----------SLKPVQSIKAHPSNCICIEFDPDGRY  203 (313)
T ss_pred             cccceeehhc-ccceeeeeeecCC-CCEEEEecCCceEEEEecc----------ccccccccccCCcceEEEEECCCCce
Confidence            9887776544 3456777888855 4577777788999999887          56688888999999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEe
Q 004214          395 VCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT  474 (768)
Q Consensus       395 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  474 (768)
                      +|+|+.|..+.+||++..-+.+.+..+.-+|..+.||.+|++||+|++|..|-|=++.+|..+..+. +.++...++|+|
T Consensus       204 fA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP  282 (313)
T KOG1407|consen  204 FATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP  282 (313)
T ss_pred             EeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC
Confidence            9999999999999999999999999999999999999999999999999999999999999999998 889999999999


Q ss_pred             CCCEEEEEeCC
Q 004214          475 RGAQIVSCGAD  485 (768)
Q Consensus       475 ~~~~l~s~~~d  485 (768)
                      ...+||-++.|
T Consensus       283 k~~LLAyA~dd  293 (313)
T KOG1407|consen  283 KRPLLAYACDD  293 (313)
T ss_pred             CCceeeEEecC
Confidence            99999887764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.98  E-value=9.6e-30  Score=225.58  Aligned_cols=295  Identities=21%  Similarity=0.231  Sum_probs=246.7

Q ss_pred             eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214          234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD  313 (768)
Q Consensus       234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd  313 (768)
                      .+.||..+++.+.|+ .++.+|.+++.|....+|-...|+.+-++.+|++.|.|++  ...+... +++|+.|.++++||
T Consensus         5 ~l~GHERplTqiKyN-~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~D--id~~s~~-liTGSAD~t~kLWD   80 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYN-REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCD--IDWDSKH-LITGSADQTAKLWD   80 (327)
T ss_pred             ccccCccccceEEec-CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEE--ecCCcce-eeeccccceeEEEE
Confidence            467899999999998 4888999999999999999999999999999999999998  5555555 99999999999999


Q ss_pred             CCCceEEEeeecccCcEEEEEEecCCCcEEEEE----eCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214          314 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG----SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA  389 (768)
Q Consensus       314 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  389 (768)
                      +.+|+++..++ ...+|..+.|+++|...+++.    +..+.|.++|++......   ....+......+.+.++.+-|+
T Consensus        81 v~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~---~s~ep~~kI~t~~skit~a~Wg  156 (327)
T KOG0643|consen   81 VETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI---DSEEPYLKIPTPDSKITSALWG  156 (327)
T ss_pred             cCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh---cccCceEEecCCccceeeeeec
Confidence            99999999887 457899999999987444433    335789999998553211   1233455666777999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCc-eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEE
Q 004214          390 PNDSLVCTGSQDRTACVWRLPDLV-SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL  468 (768)
Q Consensus       390 ~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  468 (768)
                      |-++.|++|..||.|.+||+++++ .+.....|...|+.+.++|+..++++++.|.+-++||..+.++++++. ...+|+
T Consensus       157 ~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN  235 (327)
T KOG0643|consen  157 PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVN  235 (327)
T ss_pred             ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-eccccc
Confidence            999999999999999999999974 555667899999999999999999999999999999999999999998 678999


Q ss_pred             EEEEEeCCCEEEEEeCCCc--EE------------EEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214          469 RASFLTRGAQIVSCGADGL--VK------------LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  534 (768)
Q Consensus       469 ~~~~s~~~~~l~s~~~dg~--i~------------iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~  534 (768)
                      +.+++|....++.|+.-..  |.            +|++-.-+.+..+++|-++|++++|+|+|...++||+||.|++..
T Consensus       236 ~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~  315 (327)
T KOG0643|consen  236 TAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH  315 (327)
T ss_pred             ceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence            9999998887777664322  22            222222345667789999999999999999999999999999986


Q ss_pred             cCC
Q 004214          535 DST  537 (768)
Q Consensus       535 ~~~  537 (768)
                      ...
T Consensus       316 Fd~  318 (327)
T KOG0643|consen  316 FDS  318 (327)
T ss_pred             ecc
Confidence            653

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.98  E-value=3.3e-31  Score=232.32  Aligned_cols=289  Identities=20%  Similarity=0.296  Sum_probs=236.6

Q ss_pred             EEEEcCCCcEEEEEEee---CCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEE
Q 004214           24 HYFKGHKGVVSSILFHP---DTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL  100 (768)
Q Consensus        24 ~~l~gh~~~V~~l~~sp---d~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~v  100 (768)
                      .+..||+.+|..++|||   +|-+  |++++.||.-.+-+-++|.-+.+|.+|.+.|++..+..+....++++.|-+-++
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~f--lisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv   85 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYF--LISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV   85 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceE--EEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence            46679999999999986   5544  999999999999999999999999999999999999999989999999999999


Q ss_pred             EECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCce
Q 004214          101 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV  180 (768)
Q Consensus       101 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~  180 (768)
                      ||.-+|..+.++.+...+.+++|+.+..                                                    
T Consensus        86 w~a~tgdelhsf~hkhivk~~af~~ds~----------------------------------------------------  113 (334)
T KOG0278|consen   86 WDAVTGDELHSFEHKHIVKAVAFSQDSN----------------------------------------------------  113 (334)
T ss_pred             hhhhhhhhhhhhhhhheeeeEEecccch----------------------------------------------------
Confidence            9999998888887766666666655443                                                    


Q ss_pred             eecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC
Q 004214          181 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN  260 (768)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  260 (768)
                                                                                               +|++|+.
T Consensus       114 -------------------------------------------------------------------------~lltgg~  120 (334)
T KOG0278|consen  114 -------------------------------------------------------------------------YLLTGGQ  120 (334)
T ss_pred             -------------------------------------------------------------------------hhhccch
Confidence                                                                                     3444444


Q ss_pred             CCcEEEEECCCce-eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCC
Q 004214          261 IEQVQVYDLSSMS-CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL  339 (768)
Q Consensus       261 ~~~i~i~d~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  339 (768)
                      +..+++||++..+ +...+.+|.+.|..+.  |...+.. +++++.|++||+||.+++..+..+. ...+|+++.++++|
T Consensus       121 ekllrvfdln~p~App~E~~ghtg~Ir~v~--wc~eD~~-iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG  196 (334)
T KOG0278|consen  121 EKLLRVFDLNRPKAPPKEISGHTGGIRTVL--WCHEDKC-ILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDG  196 (334)
T ss_pred             HHHhhhhhccCCCCCchhhcCCCCcceeEE--EeccCce-EEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCC
Confidence            4444444444332 3346678888888887  4455665 7888999999999999999998876 45789999999997


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEE-
Q 004214          340 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF-  418 (768)
Q Consensus       340 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-  418 (768)
                      .  +++....+.|++||......          ... ..-...|.+...+|+...+++|+.|..++.||..+++.+..+ 
T Consensus       197 ~--ilTia~gssV~Fwdaksf~~----------lKs-~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n  263 (334)
T KOG0278|consen  197 R--ILTIAYGSSVKFWDAKSFGL----------LKS-YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN  263 (334)
T ss_pred             C--EEEEecCceeEEeccccccc----------eee-ccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecc
Confidence            6  77778889999999875432          111 123456889999999999999999999999999999999886 


Q ss_pred             eccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce
Q 004214          419 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC  456 (768)
Q Consensus       419 ~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~  456 (768)
                      ++|.++|.|+.|+|+|...++|++||+|++|....++.
T Consensus       264 kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  264 KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             cCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            89999999999999999999999999999999866553

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.5e-29  Score=223.69  Aligned_cols=278  Identities=19%  Similarity=0.262  Sum_probs=244.1

Q ss_pred             eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeee--eeCCccceEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214          233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV--LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR  310 (768)
Q Consensus       233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~  310 (768)
                      +...+|...+.+++|.. ++..++.++.++.+.+|++........  ..+|.+.|-.+.  +.+....++++++.|.+|+
T Consensus        14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~--w~~~~~d~~atas~dk~ir   90 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLC--WDPKHPDLFATASGDKTIR   90 (313)
T ss_pred             HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhhe--eCCCCCcceEEecCCceEE
Confidence            56678889999999984 889999999999999999988765543  578988888887  7787777899999999999


Q ss_pred             EEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214          311 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP  390 (768)
Q Consensus       311 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  390 (768)
                      +||.+.+++........+.+ -+.|+|+|. ++++++.|..|.+.|.+......           .......++-++|+.
T Consensus        91 ~wd~r~~k~~~~i~~~~eni-~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~-----------~~~~~~e~ne~~w~~  157 (313)
T KOG1407|consen   91 IWDIRSGKCTARIETKGENI-NITWSPDGE-YIAVGNKDDRITFIDARTYKIVN-----------EEQFKFEVNEISWNN  157 (313)
T ss_pred             EEEeccCcEEEEeeccCcce-EEEEcCCCC-EEEEecCcccEEEEEecccceee-----------hhcccceeeeeeecC
Confidence            99999999998877555444 577999977 79999999999999988542211           122334577888998


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEE
Q 004214          391 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA  470 (768)
Q Consensus       391 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  470 (768)
                      ++.+++.....|+|.|......+++..++.|.....|+.|+|+|+++|+|+.|..+.+||+..--|++.+..+.-+|..+
T Consensus       158 ~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTl  237 (313)
T KOG1407|consen  158 SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTL  237 (313)
T ss_pred             CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEE
Confidence            88888887888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 004214          471 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD  527 (768)
Q Consensus       471 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d  527 (768)
                      .|+.||++||+|++|..|-|=++++|..+..+. +.++...++|+|....||-++.|
T Consensus       238 SFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  238 SFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             EeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence            999999999999999999999999999999997 89999999999999999977754

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=1e-29  Score=266.53  Aligned_cols=290  Identities=35%  Similarity=0.596  Sum_probs=251.3

Q ss_pred             EEEEc-CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEE-ecCccceeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004214           24 HYFKG-HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT-LDKHFSRVTSMAITSDGSTLISAGRDKVVNLW  101 (768)
Q Consensus        24 ~~l~g-h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~-l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vW  101 (768)
                      ..+.+ |...+.+..|++  .+  +++++.|++|++||..++..+.. +.||.+.|++++|..-+.+|++|+.|.++++|
T Consensus       201 ~~~~~~~~~~~~~~q~~~--~~--~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvW  276 (537)
T KOG0274|consen  201 KVLLGTDDHVVLCLQLHD--GF--FKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVW  276 (537)
T ss_pred             eeecccCcchhhhheeec--Ce--EEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeE
Confidence            34444 677899999983  44  99999999999999999999988 99999999999998878899999999988888


Q ss_pred             ECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCcee
Q 004214          102 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT  181 (768)
Q Consensus       102 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~  181 (768)
                      |..+|+|.                                                                        
T Consensus       277 d~~sg~C~------------------------------------------------------------------------  284 (537)
T KOG0274|consen  277 DCSTGECT------------------------------------------------------------------------  284 (537)
T ss_pred             ecCCCcEE------------------------------------------------------------------------
Confidence            87665433                                                                        


Q ss_pred             ecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCC
Q 004214          182 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI  261 (768)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~  261 (768)
                                                                                                      
T Consensus       285 --------------------------------------------------------------------------------  284 (537)
T KOG0274|consen  285 --------------------------------------------------------------------------------  284 (537)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN  341 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  341 (768)
                                    ..+.+|.+.+.|+.     ....++++|+.|.+|++|++.++..+..+.+|.++|.++.++.   .
T Consensus       285 --------------~~l~gh~stv~~~~-----~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~---~  342 (537)
T KOG0274|consen  285 --------------HSLQGHTSSVRCLT-----IDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDE---P  342 (537)
T ss_pred             --------------EEecCCCceEEEEE-----ccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecC---C
Confidence                          35556777777764     2233588899999999999999999999999999999999983   3


Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceEEEEec
Q 004214          342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRG  420 (768)
Q Consensus       342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~  420 (768)
                      ++++|+.|++|++||+.          ..+....+.+|...|.++.+.+. ..+++|+.|++|++||+++. +++.++.+
T Consensus       343 ~lvsgs~d~~v~VW~~~----------~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~  411 (537)
T KOG0274|consen  343 LLVSGSYDGTVKVWDPR----------TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG  411 (537)
T ss_pred             EEEEEecCceEEEEEhh----------hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC
Confidence            89999999999999998          45688888999999999988776 89999999999999999999 99999999


Q ss_pred             cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec-CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEE
Q 004214          421 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI  499 (768)
Q Consensus       421 ~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  499 (768)
                      |..-+..+.+.  +++|++++.|++|++||..++++++++.+ |...|..+++.  ...+++++.||.+++||++++++.
T Consensus       412 h~~~v~~l~~~--~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  412 HTSLVSSLLLR--DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI  487 (537)
T ss_pred             Ccccccccccc--cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence            99988776655  88999999999999999999999999998 67888888876  468899999999999999999998


Q ss_pred             EEeccCC
Q 004214          500 ATYDKHE  506 (768)
Q Consensus       500 ~~~~~~~  506 (768)
                      ..+-.+.
T Consensus       488 ~~l~~~~  494 (537)
T KOG0274|consen  488 RTLLSTD  494 (537)
T ss_pred             hhhhhcc
Confidence            8774343

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1e-28  Score=225.68  Aligned_cols=286  Identities=18%  Similarity=0.276  Sum_probs=239.5

Q ss_pred             eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeC--CCeEE
Q 004214          233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK--DNSVR  310 (768)
Q Consensus       233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~--dg~i~  310 (768)
                      +.+....+.|.++.|+ +++.++++++.|..+++||..++.++..+..+.-.+..+.  +...... ++.++.  |.+|+
T Consensus         8 k~f~~~~~~i~sl~fs-~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~--Fth~~~~-~i~sStk~d~tIr   83 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFS-DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLAC--FTHHSNT-VIHSSTKEDDTIR   83 (311)
T ss_pred             cccccCCCceeEEEec-CCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEE--EecCCce-EEEccCCCCCceE
Confidence            4444567889999998 4788889999999999999999999999998887877776  6666666 444544  88999


Q ss_pred             EEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214          311 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP  390 (768)
Q Consensus       311 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  390 (768)
                      ..++.+++.++.+.||...|.+++.+|.+. .+++++.|++|++||++...          +....  +...-..++|+|
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~----------cqg~l--~~~~~pi~AfDp  150 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKK----------CQGLL--NLSGRPIAAFDP  150 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCC----------CceEE--ecCCCcceeECC
Confidence            999999999999999999999999999874 79999999999999998432          22222  222334679999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCC--ceEEEEe---ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC
Q 004214          391 NDSLVCTGSQDRTACVWRLPDL--VSVVTFR---GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS  465 (768)
Q Consensus       391 ~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~---~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~  465 (768)
                      .|-++|++.....|++||++..  .+..++.   +.....+.+.|||+|++++.+...+.+++.|.-+|..+.++.++..
T Consensus       151 ~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~  230 (311)
T KOG1446|consen  151 EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN  230 (311)
T ss_pred             CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC
Confidence            9999999998889999999864  3444443   3466789999999999999999999999999999999999987765


Q ss_pred             cE---EEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          466 SV---LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK-HEDKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       466 ~v---~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      .-   ...+|+||++++++|+.||+|.+|++++|..+..+.+ +.+++.++.|+|.-.++++++  ..+.+|-...
T Consensus       231 ~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~  304 (311)
T KOG1446|consen  231 AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDE  304 (311)
T ss_pred             CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEeccc
Confidence            43   6788999999999999999999999999999999998 689999999999887777765  4688887653

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.1e-30  Score=226.28  Aligned_cols=283  Identities=22%  Similarity=0.361  Sum_probs=236.4

Q ss_pred             eEEEEccCC-CceEEE-------EecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004214          194 TAATVLPSN-QGLLCV-------TADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ  265 (768)
Q Consensus       194 ~~~~~~~~~-~~l~~~-------~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~  265 (768)
                      ..+.|+|-- ++++++       ..+|.+.+.++...+.    +.. .......+.+.+++|++..++.+++++.||.++
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~g----i~e-~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLr   86 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKG----IQE-CQSYDTEDGLFDVAWSENHENQVIAASGDGSLR   86 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCC----eEE-EEeeecccceeEeeecCCCcceEEEEecCceEE
Confidence            455566653 334333       3578888888863321    111 122234568899999999999999999999999


Q ss_pred             EEECCC-ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEE
Q 004214          266 VYDLSS-MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV  344 (768)
Q Consensus       266 i~d~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  344 (768)
                      +||+.. ..++..++.|...|.+++  +....+..+++++.||+|++|+...+..+.++.+|...|....|+|..+++++
T Consensus        87 l~d~~~~s~Pi~~~kEH~~EV~Svd--wn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfa  164 (311)
T KOG0277|consen   87 LFDLTMPSKPIHKFKEHKREVYSVD--WNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFA  164 (311)
T ss_pred             EeccCCCCcchhHHHhhhhheEEec--cccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEE
Confidence            999653 456778899999999999  77777777899999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC-ceEEEEeccC
Q 004214          345 SGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHK  422 (768)
Q Consensus       345 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~  422 (768)
                      +++.|+++++||++..         .+. ..+..|...|.++.|+. +...+++|+.|+.|+.||+++. .++..+.+|.
T Consensus       165 s~Sgd~~l~lwdvr~~---------gk~-~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~  234 (311)
T KOG0277|consen  165 SASGDGTLRLWDVRSP---------GKF-MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHG  234 (311)
T ss_pred             EccCCceEEEEEecCC---------Cce-eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCc
Confidence            9999999999999853         223 33778999999999998 7789999999999999999875 4678899999


Q ss_pred             CCeEEEEEccCC-CEEEEeeCCCcEEEEeCCC-CceeEEeecCCCcEEEEEEEe-CCCEEEEEeCCCcEEEEEC
Q 004214          423 RGIWSVEFSPVD-QVVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLRASFLT-RGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       423 ~~v~~v~~s~~~-~~l~t~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~  493 (768)
                      -.|..+.|||.. .+|++++.|-++||||... ..++.+...|+..+..+.|++ ++.++++++.|+.++||+.
T Consensus       235 ~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  235 LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            999999999964 7899999999999999874 457778888999999999987 5679999999999999984

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=5.3e-31  Score=243.42  Aligned_cols=288  Identities=22%  Similarity=0.403  Sum_probs=230.0

Q ss_pred             EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214           23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD  102 (768)
Q Consensus        23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd  102 (768)
                      +..|.||...|.|++=+|. +...+|||+.||.|+|||+....++.++..|.+.|..|++..  ..++++|.|.+|+.|.
T Consensus        59 v~~L~gHrdGV~~lakhp~-~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPN-KLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             hhhccccccccchhhcCcc-hhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence            5678999999999999996 335599999999999999999999999999999999999986  6789999999999997


Q ss_pred             CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214          103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI  182 (768)
Q Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~  182 (768)
                      +... +..++.                                                                     
T Consensus       136 ~~~~-p~~til---------------------------------------------------------------------  145 (433)
T KOG0268|consen  136 IDGP-PLHTIL---------------------------------------------------------------------  145 (433)
T ss_pred             ccCC-cceeee---------------------------------------------------------------------
Confidence            6431 000000                                                                     


Q ss_pred             cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214          183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE  262 (768)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~  262 (768)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (433)
T KOG0268|consen  146 --------------------------------------------------------------------------------  145 (433)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcE
Q 004214          263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF  342 (768)
Q Consensus       263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  342 (768)
                                        ....+..++  ....+. .++|++.  .|.|||.....++..+.--...|.++.|+|....+
T Consensus       146 ------------------g~s~~~gId--h~~~~~-~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsI  202 (433)
T KOG0268|consen  146 ------------------GKSVYLGID--HHRKNS-VFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSI  202 (433)
T ss_pred             ------------------ccccccccc--cccccc-cccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchh
Confidence                              000111111  112222 3777765  48999999888999988888999999999998889


Q ss_pred             EEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceEEEEecc
Q 004214          343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRGH  421 (768)
Q Consensus       343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~  421 (768)
                      |++++.|++|.+||++........           .....-+.++|+|.+-.+++|+.|..++.||++.. .++....+|
T Consensus       203 Las~~sDrsIvLyD~R~~~Pl~KV-----------i~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh  271 (433)
T KOG0268|consen  203 LASCASDRSIVLYDLRQASPLKKV-----------ILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH  271 (433)
T ss_pred             eeeeccCCceEEEecccCCcccee-----------eeeccccceecCccccceeeccccccceehhhhhhcccchhhccc
Confidence            999999999999999965422111           11234578999998889999999999999999876 567788999


Q ss_pred             CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec-CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe
Q 004214          422 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE  497 (768)
Q Consensus       422 ~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  497 (768)
                      ...|.+++|||.|+-+++||.|.+|+||..+.+.....+.. --..|.++.||.|.+|+++|+.|+.|++|.....+
T Consensus       272 vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  272 VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence            99999999999999999999999999999987754433321 22468999999999999999999999999765444

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=8.4e-31  Score=238.09  Aligned_cols=287  Identities=20%  Similarity=0.313  Sum_probs=243.6

Q ss_pred             cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEec--------CccceeEEEEEcCCCCEEEEEeCCCeEE
Q 004214           28 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD--------KHFSRVTSMAITSDGSTLISAGRDKVVN   99 (768)
Q Consensus        28 gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~--------~h~~~V~~l~fs~d~~~L~s~~~dg~i~   99 (768)
                      |....+.|..|||||++  |++|+.||.|.|||..+|+....++        -+..+|.|+.||.|...|++|+.||.|+
T Consensus       211 g~KSh~EcA~FSPDgqy--LvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQY--LVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK  288 (508)
T ss_pred             ccccchhheeeCCCCce--EeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence            45677899999999998  9999999999999999998765543        3778999999999999999999999999


Q ss_pred             EEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCc
Q 004214          100 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD  179 (768)
Q Consensus       100 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~  179 (768)
                      +|.+++|.|+..+..                                                                 
T Consensus       289 vWri~tG~ClRrFdr-----------------------------------------------------------------  303 (508)
T KOG0275|consen  289 VWRIETGQCLRRFDR-----------------------------------------------------------------  303 (508)
T ss_pred             EEEEecchHHHHhhh-----------------------------------------------------------------
Confidence            999999988766531                                                                 


Q ss_pred             eeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEe
Q 004214          180 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT  259 (768)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  259 (768)
                                                                               .|...|+++.|+. ++..+.+++
T Consensus       304 ---------------------------------------------------------AHtkGvt~l~FSr-D~SqiLS~s  325 (508)
T KOG0275|consen  304 ---------------------------------------------------------AHTKGVTCLSFSR-DNSQILSAS  325 (508)
T ss_pred             ---------------------------------------------------------hhccCeeEEEEcc-Ccchhhccc
Confidence                                                                     2334556666663 556677788


Q ss_pred             CCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec--ccCcEEEEEEec
Q 004214          260 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG--HMGAVGAVAFSK  337 (768)
Q Consensus       260 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~  337 (768)
                      .|..+++.-+.+|+++..+.+|.+.|+...  +.++|.. +++++.||+|++|+..+.+++.+++.  ...+|.++...|
T Consensus       326 fD~tvRiHGlKSGK~LKEfrGHsSyvn~a~--ft~dG~~-iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~P  402 (508)
T KOG0275|consen  326 FDQTVRIHGLKSGKCLKEFRGHSSYVNEAT--FTDDGHH-IISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLP  402 (508)
T ss_pred             ccceEEEeccccchhHHHhcCccccccceE--EcCCCCe-EEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcC
Confidence            889999999999999999999999999987  7777776 99999999999999999999988874  456788898989


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 004214          338 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT  417 (768)
Q Consensus       338 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~  417 (768)
                      .++..++++...++|.+.++.+.-        .+....-....+...+.+.+|.|.++.+.+.|+.++.|...+|+.-.+
T Consensus       403 Knpeh~iVCNrsntv~imn~qGQv--------VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t  474 (508)
T KOG0275|consen  403 KNPEHFIVCNRSNTVYIMNMQGQV--------VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT  474 (508)
T ss_pred             CCCceEEEEcCCCeEEEEeccceE--------EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeee
Confidence            888899999999999999986421        011111122345677788999999999999999999999999999999


Q ss_pred             EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEe
Q 004214          418 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS  450 (768)
Q Consensus       418 ~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd  450 (768)
                      +..|...+..++-+|..++||+-++||.+++|.
T Consensus       475 l~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  475 LPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             eecccccccccccCcccchhhhhcccchhhhcC
Confidence            999999999999999999999999999999994

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=6.2e-29  Score=249.74  Aligned_cols=271  Identities=21%  Similarity=0.369  Sum_probs=240.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec-ccCc
Q 004214          251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-HMGA  329 (768)
Q Consensus       251 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~  329 (768)
                      ..+.+++|.. ..|++|+..++........+...|+++.  +.++|.. |++|..+|.|.|||..+.+.+..+.+ |...
T Consensus       187 s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~--ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~~~~~h~~r  262 (484)
T KOG0305|consen  187 SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVK--WSPDGSH-LAVGTSDGTVQIWDVKEQKKTRTLRGSHASR  262 (484)
T ss_pred             cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEE--ECCCCCE-EEEeecCCeEEEEehhhccccccccCCcCce
Confidence            4457777765 7899999999998777777789999998  6677776 99999999999999999999999888 9999


Q ss_pred             EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004214          330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL  409 (768)
Q Consensus       330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~  409 (768)
                      |.+++|...   .+.+|+.|+.|..+|++....         ......+|...|..+.|+++++++|+|+.|+.+.|||.
T Consensus       263 vg~laW~~~---~lssGsr~~~I~~~dvR~~~~---------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~  330 (484)
T KOG0305|consen  263 VGSLAWNSS---VLSSGSRDGKILNHDVRISQH---------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG  330 (484)
T ss_pred             eEEEeccCc---eEEEecCCCcEEEEEEecchh---------hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccC
Confidence            999999943   799999999999999986432         11136789999999999999999999999999999999


Q ss_pred             CCCceEEEEeccCCCeEEEEEccC-CCEEEEee--CCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEe--C
Q 004214          410 PDLVSVVTFRGHKRGIWSVEFSPV-DQVVITAS--GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG--A  484 (768)
Q Consensus       410 ~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~  484 (768)
                      ....+...+..|...|.+++|+|- ..+||+|+  .|+.|++||..+|..+..+. -...|..+.|++..+.|+++.  .
T Consensus       331 ~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s  409 (484)
T KOG0305|consen  331 LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYS  409 (484)
T ss_pred             CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCC
Confidence            999999999999999999999995 57888875  59999999999999998887 567899999999998777654  3


Q ss_pred             CCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          485 DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       485 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      ++.|.||+..+.+.+..+.+|..+|..++++|||..+++|+.|.++++|++-+.
T Consensus       410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  410 ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            668999999999999999999999999999999999999999999999998764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.6e-29  Score=229.27  Aligned_cols=332  Identities=24%  Similarity=0.410  Sum_probs=253.2

Q ss_pred             EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEE
Q 004214           21 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL  100 (768)
Q Consensus        21 ~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~v  100 (768)
                      +.++.|.||.+.|+.++...  ..+++.+++.|.+.+||.+++|.|+.++.||.+.|.++.|++.+.++++++.|++-.|
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~--tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI  216 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADS--TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI  216 (481)
T ss_pred             eehhhhcccccceeeehhhc--CCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence            34667889999999998865  4457999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCce
Q 004214          101 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV  180 (768)
Q Consensus       101 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~  180 (768)
                      |...-.-.+   |....       |.+.                                                ..+.
T Consensus       217 W~~av~~~v---P~~~a-------~~~h------------------------------------------------SsEe  238 (481)
T KOG0300|consen  217 WKAAVNWEV---PSNNA-------PSDH------------------------------------------------SSEE  238 (481)
T ss_pred             HHHhhcCcC---CCCCC-------CCCC------------------------------------------------Cchh
Confidence            974211100   00000       0000                                                0000


Q ss_pred             eecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC
Q 004214          181 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN  260 (768)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  260 (768)
                      ..                                                     ..++....+..-   +     ..+.
T Consensus       239 E~-----------------------------------------------------e~sDe~~~d~d~---~-----~~sD  257 (481)
T KOG0300|consen  239 EE-----------------------------------------------------EHSDEHNRDTDS---S-----EKSD  257 (481)
T ss_pred             hh-----------------------------------------------------hccccccccccc---c-----cccC
Confidence            00                                                     000000000000   0     0000


Q ss_pred             CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCC
Q 004214          261 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ  340 (768)
Q Consensus       261 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  340 (768)
                      ...|+       .++..+.+|...|.+.+  +...+.. +++++.|.+..+||++++.++..+.+|....+.++-+|. +
T Consensus       258 ~~tiR-------vPl~~ltgH~~vV~a~d--WL~gg~Q-~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt-Q  326 (481)
T KOG0300|consen  258 GHTIR-------VPLMRLTGHRAVVSACD--WLAGGQQ-MVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT-Q  326 (481)
T ss_pred             Cceee-------eeeeeeeccccceEehh--hhcCcce-eeeeeccccceeeeeccCceeccccCcchhccccccCCc-c
Confidence            01121       13446788999999887  6666665 999999999999999999999999999999999999998 5


Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eEEEEe
Q 004214          341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-SVVTFR  419 (768)
Q Consensus       341 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~  419 (768)
                      .++++.+.|.+.++||++.         .......+.+|...|++..|..+. .+++|+.|.+|++||+++.+ ++.+++
T Consensus       327 rLVvTsSrDtTFRLWDFRe---------aI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR  396 (481)
T KOG0300|consen  327 RLVVTSSRDTTFRLWDFRE---------AIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR  396 (481)
T ss_pred             eEEEEeccCceeEeccchh---------hcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee
Confidence            5899999999999999983         455778899999999999999765 58899999999999998875 555665


Q ss_pred             ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEE-----eecCCCcEEEEEEEeCC--CEEEEEeCCCcEEEEE
Q 004214          420 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-----FEGHTSSVLRASFLTRG--AQIVSCGADGLVKLWT  492 (768)
Q Consensus       420 ~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~-----~~~~~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd  492 (768)
                       ...+++.++.+..+.+++.-..+..|++||+.. ..+..     -.+|..-|+|++|..+.  .-|++++-|..+.-|.
T Consensus       397 -tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG-~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~  474 (481)
T KOG0300|consen  397 -TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG-NRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWK  474 (481)
T ss_pred             -cCCccceeEeecCCceEEeccCCceEEEEecCC-CccccCCcccccccceeeeeeeccccCcccccccccccceeeeeE
Confidence             567899999999888999999999999999954 43333     34899999999998653  4688999999999998


Q ss_pred             CCCC
Q 004214          493 VRTG  496 (768)
Q Consensus       493 ~~~~  496 (768)
                      +...
T Consensus       475 in~p  478 (481)
T KOG0300|consen  475 INTP  478 (481)
T ss_pred             eccc
Confidence            7653

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.5e-29  Score=239.11  Aligned_cols=282  Identities=19%  Similarity=0.338  Sum_probs=248.0

Q ss_pred             ccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 004214          190 KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL  269 (768)
Q Consensus       190 ~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~  269 (768)
                      ...+..++|+|....-++++..-.+.+|+.....       ..+.+..+...+.++.|-. ++.++|+|...|.|++||.
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~-------~~k~~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~   97 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS-------VRKTFSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFDM   97 (487)
T ss_pred             cCcceeEecCCCCCCceEEecccEEEEEecchhh-------hhhhHHhhccceeEEEeec-CCeEEEccCCcCcEEEecc
Confidence            3678899999999999999999999999876432       3344566777888888874 8899999999999999998


Q ss_pred             CCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC
Q 004214          270 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD  349 (768)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  349 (768)
                      .+...++.+..|+.++..+.  |.+.++.++++|+.|+.+++||+.+......+.+|++.|.|.+|+|...+++++|+.|
T Consensus        98 k~r~iLR~~~ah~apv~~~~--f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYD  175 (487)
T KOG0310|consen   98 KSRVILRQLYAHQAPVHVTK--FSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYD  175 (487)
T ss_pred             ccHHHHHHHhhccCceeEEE--ecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCC
Confidence            88788889999999999998  7788888899999999999999999988778999999999999999988899999999


Q ss_pred             CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eEEEEeccCCCeEEE
Q 004214          350 HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-SVVTFRGHKRGIWSV  428 (768)
Q Consensus       350 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~v  428 (768)
                      |.|++||.+..          ........|+.+|..+.+-|.|..+++++. ..|++||+.+|. .+..+..|...|+|+
T Consensus       176 g~vrl~DtR~~----------~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL  244 (487)
T KOG0310|consen  176 GKVRLWDTRSL----------TSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCL  244 (487)
T ss_pred             ceEEEEEeccC----------CceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEE
Confidence            99999999843          244455679999999999999999999875 579999998654 445555599999999


Q ss_pred             EEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214          429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       429 ~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  493 (768)
                      ++..++..|++|+-|+.|++||+.+.+.+..+. ..++|.+++.+|++..++.|..||.+.+-+.
T Consensus       245 ~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  245 RLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             EeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehh
Confidence            999999999999999999999999999999887 7899999999999999999999998877643

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=4.6e-30  Score=241.36  Aligned_cols=282  Identities=23%  Similarity=0.329  Sum_probs=241.8

Q ss_pred             eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce--eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEE
Q 004214          234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL  311 (768)
Q Consensus       234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~i  311 (768)
                      .+..|.+++.++.|.+ +...|++|+.|..|.+|+....+  ...++.+..++++.++  +.+++.. +++++.|+.+++
T Consensus       170 ~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d--~d~~~~~-~iAas~d~~~r~  245 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSID--FDSDNKH-VIAASNDKNLRL  245 (459)
T ss_pred             hhhccccccceeEEcc-CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceee--ecCCCce-EEeecCCCceee
Confidence            3556788899999984 66799999999999999988776  6678889999999998  8888877 888899999999


Q ss_pred             EeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214          312 WDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN  391 (768)
Q Consensus       312 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  391 (768)
                      |++...+...++.+|++.|+++.|..... .+++|+.|.+|+.||+.......          .+ -....+..|..+  
T Consensus       246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~k----------t~-l~~S~cnDI~~~--  311 (459)
T KOG0288|consen  246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSK----------TV-LPGSQCNDIVCS--  311 (459)
T ss_pred             eeccchhhhhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhheec----------cc-cccccccceEec--
Confidence            99999999999999999999999988744 49999999999999998532211          11 112344555555  


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC----CCcE
Q 004214          392 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH----TSSV  467 (768)
Q Consensus       392 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~----~~~v  467 (768)
                      +..+++|-.|++|++||.++..+......+. .|+++..++++..|.+++.|.++.+.|+++......+.+.    ....
T Consensus       312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDw  390 (459)
T KOG0288|consen  312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDW  390 (459)
T ss_pred             ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccc
Confidence            5678899999999999999999999988765 9999999999999999999999999999999888887632    2348


Q ss_pred             EEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCc--EEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214          468 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK--IWALAVGKKTEMFATGGSDALVNLWH  534 (768)
Q Consensus       468 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~l~~s~~~~~l~s~~~dg~v~vw~  534 (768)
                      +.+.|||++.|+++|+.||.|+||++.++++...+......  |++++|+|.|..|++++.++.+.+|.
T Consensus       391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            89999999999999999999999999999999888765554  99999999999999999999999993

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.5e-27  Score=218.04  Aligned_cols=292  Identities=18%  Similarity=0.303  Sum_probs=231.4

Q ss_pred             eeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccee-EeeEEecCCCCCccccccccchhhhh
Q 004214           65 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM-VEAVCAIPPGSAFDSFLSSYNQQTIK  143 (768)
Q Consensus        65 ~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~  143 (768)
                      ++.+.|..-.+.|.++.|+++|.+|++++.|.++++||..+++.+.++..... +..++                     
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~---------------------   63 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLAC---------------------   63 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEE---------------------
Confidence            34455665677899999999999999999999999999999988877754321 22222                     


Q ss_pred             cccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCc
Q 004214          144 KKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP  223 (768)
Q Consensus       144 ~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~  223 (768)
                                                                                                      
T Consensus        64 --------------------------------------------------------------------------------   63 (311)
T KOG1446|consen   64 --------------------------------------------------------------------------------   63 (311)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC--CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEE
Q 004214          224 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN--IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV  301 (768)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~  301 (768)
                                             |.... ..++.++.  |..|+..++.+.+.++.+.||...|..+.  ..|.+.. ++
T Consensus        64 -----------------------Fth~~-~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~--~sP~~d~-Fl  116 (311)
T KOG1446|consen   64 -----------------------FTHHS-NTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLS--VSPKDDT-FL  116 (311)
T ss_pred             -----------------------EecCC-ceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEE--ecCCCCe-EE
Confidence                                   22111 12222222  67899999999999999999999999998  6677765 99


Q ss_pred             EEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC
Q 004214          302 TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK  381 (768)
Q Consensus       302 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  381 (768)
                      +++.|++|++||++..++...+.....  ..++|.|.|- ++|++.....|++||++.....+.......     .....
T Consensus       117 S~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~-----~~~~~  188 (311)
T KOG1446|consen  117 SSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSIT-----DNDEA  188 (311)
T ss_pred             ecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccC-----CCCcc
Confidence            999999999999998877776654433  4578999965 777777777999999997644332221111     13456


Q ss_pred             CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCe---EEEEEccCCCEEEEeeCCCcEEEEeCCCCceeE
Q 004214          382 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGI---WSVEFSPVDQVVITASGDKTIKIWSISDGSCLK  458 (768)
Q Consensus       382 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v---~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~  458 (768)
                      ..+.+.|||||+.++.++..+.+++.|.-+|....++.++...-   -..+|+||++++++|+.||+|.+|++++|..+.
T Consensus       189 ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~  268 (311)
T KOG1446|consen  189 EWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA  268 (311)
T ss_pred             ceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence            78999999999999999999999999999999999988876543   578899999999999999999999999999999


Q ss_pred             Eeec-CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214          459 TFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVR  494 (768)
Q Consensus       459 ~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  494 (768)
                      .+.+ +..++.++.|+|.-..+++++  ..+.+|=..
T Consensus       269 ~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~  303 (311)
T KOG1446|consen  269 VLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPD  303 (311)
T ss_pred             EecCCCCCCccccccCCceeeeeecC--ceEEEEecc
Confidence            9998 689999999999877777664  568888654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.6e-29  Score=256.23  Aligned_cols=209  Identities=26%  Similarity=0.403  Sum_probs=174.7

Q ss_pred             ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCe
Q 004214          272 MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT  351 (768)
Q Consensus       272 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~  351 (768)
                      .+++..+.||.+.|..+.   |+.++ +|++++.|.+|++|++....++..|. |..-|+|++|+|...++|++|+-||.
T Consensus       359 ekP~~ef~GHt~DILDlS---WSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~K  433 (712)
T KOG0283|consen  359 EKPFCEFKGHTADILDLS---WSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGK  433 (712)
T ss_pred             ccchhhhhccchhheecc---cccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccc
Confidence            345668899999999995   34444 49999999999999999999999886 99999999999999999999999999


Q ss_pred             EEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec--c------CC
Q 004214          352 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--H------KR  423 (768)
Q Consensus       352 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~------~~  423 (768)
                      ++||++...           .......-..-|++++|.|+|+..++|+.+|.+++|+....+......-  |      ..
T Consensus       434 vRiWsI~d~-----------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~  502 (712)
T KOG0283|consen  434 VRLWSISDK-----------KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK  502 (712)
T ss_pred             eEEeecCcC-----------eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc
Confidence            999999743           2222233347899999999999999999999999999998877655432  1      23


Q ss_pred             CeEEEEEccCC-CEEEEeeCCCcEEEEeCCCCceeEEeecCCC--cEEEEEEEeCCCEEEEEeCCCcEEEEECCCC
Q 004214          424 GIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEGHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVRTG  496 (768)
Q Consensus       424 ~v~~v~~s~~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  496 (768)
                      .|+.+.|.|.. ..+++.+.|..|||||+++..++..|+|+..  .-....|+.||++|+++++|..|++|+....
T Consensus       503 rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  503 RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence            79999999854 3477777899999999999999999997654  3456789999999999999999999998543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=8.1e-29  Score=239.14  Aligned_cols=304  Identities=20%  Similarity=0.291  Sum_probs=232.1

Q ss_pred             EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC----eeEEEecC-ccceeEEEEEcCCCCEEEEEeCCCe
Q 004214           23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK----KCVATLDK-HFSRVTSMAITSDGSTLISAGRDKV   97 (768)
Q Consensus        23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~----~~~~~l~~-h~~~V~~l~fs~d~~~L~s~~~dg~   97 (768)
                      --.|++|+..|+++++.|.|.+  ++||+.|.+|++||+...    +..+.+.. ....|.+++|++.|..|++.+....
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR--~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq  237 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGAR--FVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ  237 (641)
T ss_pred             eEeccCCceEEEEeeecCCCce--eeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence            4568899999999999999998  999999999999998643    22333432 3457999999999999998888888


Q ss_pred             EEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecC
Q 004214           98 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS  177 (768)
Q Consensus        98 i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~  177 (768)
                      .+++|-...+......                                                                
T Consensus       238 akl~DRdG~~~~e~~K----------------------------------------------------------------  253 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSK----------------------------------------------------------------  253 (641)
T ss_pred             eeEEccCCceeeeeec----------------------------------------------------------------
Confidence            8888754332211111                                                                


Q ss_pred             CceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEE
Q 004214          178 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV  257 (768)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  257 (768)
                                                                                                      
T Consensus       254 --------------------------------------------------------------------------------  253 (641)
T KOG0772|consen  254 --------------------------------------------------------------------------------  253 (641)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc-eEEEeee-----cccCcEE
Q 004214          258 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVGT-----GHMGAVG  331 (768)
Q Consensus       258 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~-----~~~~~v~  331 (768)
                          |.-+|-|+.      ...||...++|.+  |.|..+..+++++.||++++||+... +.+.+++     +..-+++
T Consensus       254 ----GDQYI~Dm~------nTKGHia~lt~g~--whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t  321 (641)
T KOG0772|consen  254 ----GDQYIRDMY------NTKGHIAELTCGC--WHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT  321 (641)
T ss_pred             ----cchhhhhhh------ccCCceeeeeccc--cccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce
Confidence                111111111      2346666677765  66776666888888888888887653 2233332     3345789


Q ss_pred             EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC--CeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004214          332 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK--DINSLAVAPNDSLVCTGSQDRTACVWRL  409 (768)
Q Consensus       332 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~d~  409 (768)
                      .++|+++++ ++++|+.||+|.+|+.....       ......+..+|..  .|+|++||++|++|++-+.|+++++||+
T Consensus       322 sC~~nrdg~-~iAagc~DGSIQ~W~~~~~~-------v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL  393 (641)
T KOG0772|consen  322 SCAWNRDGK-LIAAGCLDGSIQIWDKGSRT-------VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL  393 (641)
T ss_pred             eeecCCCcc-hhhhcccCCceeeeecCCcc-------cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence            999999987 69999999999999985432       2224455567877  9999999999999999999999999999


Q ss_pred             CCCc-eEEEEec--cCCCeEEEEEccCCCEEEEeeC------CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEE
Q 004214          410 PDLV-SVVTFRG--HKRGIWSVEFSPVDQVVITASG------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV  480 (768)
Q Consensus       410 ~~~~-~~~~~~~--~~~~v~~v~~s~~~~~l~t~~~------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  480 (768)
                      +..+ ++.+..+  ...+-+.++|||+.++|++|..      .|++.+||..+...+.++.-....|..+.|+|.=+.|+
T Consensus       394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~  473 (641)
T KOG0772|consen  394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF  473 (641)
T ss_pred             cccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee
Confidence            8764 4444443  2345688999999999999864      57899999999999999988889999999999999999


Q ss_pred             EEeCCCcEEEEE
Q 004214          481 SCGADGLVKLWT  492 (768)
Q Consensus       481 s~~~dg~i~iwd  492 (768)
                      .|+.||+++||=
T Consensus       474 ~gsgdG~~~vyY  485 (641)
T KOG0772|consen  474 AGSGDGTAHVYY  485 (641)
T ss_pred             eecCCCceEEEE
Confidence            999999999873

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=8.2e-30  Score=239.69  Aligned_cols=284  Identities=25%  Similarity=0.415  Sum_probs=236.3

Q ss_pred             EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe--eEEEecCccceeEEEEEcCCCCEEEEEeCCCeEE
Q 004214           22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN   99 (768)
Q Consensus        22 ~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~--~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~   99 (768)
                      +...+..|.+.|..+.|-++...  |++|+.|..|++|++..++  .+.+|.|..++|+++.|.++++++++++.|+.++
T Consensus       167 ~~~~ld~h~gev~~v~~l~~sdt--latgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r  244 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLRNSDT--LATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR  244 (459)
T ss_pred             hhhhhhccccccceeEEccCcch--hhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence            44567789999999999998777  9999999999999997766  6788888999999999999999999999999999


Q ss_pred             EEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCc
Q 004214          100 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD  179 (768)
Q Consensus       100 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~  179 (768)
                      +|++.+++..                                                                      
T Consensus       245 ~Wnvd~~r~~----------------------------------------------------------------------  254 (459)
T KOG0288|consen  245 LWNVDSLRLR----------------------------------------------------------------------  254 (459)
T ss_pred             eeeccchhhh----------------------------------------------------------------------
Confidence            9987654321                                                                      


Q ss_pred             eeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEe
Q 004214          180 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT  259 (768)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  259 (768)
                                                                                                      
T Consensus       255 --------------------------------------------------------------------------------  254 (459)
T KOG0288|consen  255 --------------------------------------------------------------------------------  254 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCC
Q 004214          260 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL  339 (768)
Q Consensus       260 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  339 (768)
                                      .++.+|++.|+++.  +...... +++|+.|.+|++||+....+..++- ....+..++.++. 
T Consensus       255 ----------------~TLsGHtdkVt~ak--~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~~~-  313 (459)
T KOG0288|consen  255 ----------------HTLSGHTDKVTAAK--FKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCSIS-  313 (459)
T ss_pred             ----------------hhhcccccceeeeh--hhccccc-eeeccccchhhhhhhhhhheecccc-ccccccceEecce-
Confidence                            24556777777775  4343433 9999999999999999988776654 3345566666533 


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 004214          340 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR  419 (768)
Q Consensus       340 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  419 (768)
                        .+++|..|+.|++||++...          .......+ +.|+++..+++|..+.+++.|.++.+.|+++......+.
T Consensus       314 --~~~SgH~DkkvRfwD~Rs~~----------~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s  380 (459)
T KOG0288|consen  314 --DVISGHFDKKVRFWDIRSAD----------KTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS  380 (459)
T ss_pred             --eeeecccccceEEEeccCCc----------eeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEee
Confidence              68999999999999998542          33343444 489999999999999999999999999999998887776


Q ss_pred             cc----CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC--cEEEEEEEeCCCEEEEEeCCCcEEEE
Q 004214          420 GH----KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS--SVLRASFLTRGAQIVSCGADGLVKLW  491 (768)
Q Consensus       420 ~~----~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iw  491 (768)
                      ..    ....+.+.|||++.|+++|+.||.|+||++.++++...+.....  .|+++.|+|.|..|++++.++.+.+|
T Consensus       381 A~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  381 AEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             ccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            42    23488999999999999999999999999999999998886554  49999999999999999999999999

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=9.4e-30  Score=231.27  Aligned_cols=282  Identities=21%  Similarity=0.364  Sum_probs=246.5

Q ss_pred             ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeee--------eeCCccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214          237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV--------LAGHSEIVLCLDTCALSSGKILIVTGSKDNS  308 (768)
Q Consensus       237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~--------~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~  308 (768)
                      |..+.+-|..|+ |++++|++|+-||.|.+||..+|+....        +.-+..+|.|+.  |+.+.. ++++|+.||.
T Consensus       211 g~KSh~EcA~FS-PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~--FSRDsE-MlAsGsqDGk  286 (508)
T KOG0275|consen  211 GQKSHVECARFS-PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCIS--FSRDSE-MLASGSQDGK  286 (508)
T ss_pred             ccccchhheeeC-CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEe--ecccHH-HhhccCcCCc
Confidence            445556666666 6999999999999999999999876543        345788999997  666555 5999999999


Q ss_pred             EEEEeCCCceEEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEE
Q 004214          309 VRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA  387 (768)
Q Consensus       309 i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  387 (768)
                      |++|.+.+|.+++.+. .|+..|+|+.|+.++. .+++++.|.++++--+..          .+....+.+|.+.|+...
T Consensus       287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKS----------GK~LKEfrGHsSyvn~a~  355 (508)
T KOG0275|consen  287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKS----------GKCLKEFRGHSSYVNEAT  355 (508)
T ss_pred             EEEEEEecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEecccc----------chhHHHhcCccccccceE
Confidence            9999999999999887 8999999999999977 689999999999998874          446667789999999999


Q ss_pred             EccCCCEEEEEeCCCcEEEEeCCCCceEEEEec--cCCCeEEEEEccC-CCEEEEeeCCCcEEEEeCCCCceeEEeec--
Q 004214          388 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--HKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTFEG--  462 (768)
Q Consensus       388 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~v~~s~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--  462 (768)
                      |.++|..+++++.||+|++|+..+.+++.+++.  ...+|.++-.-|. -..++++...++|.|-++ .|+.+++|..  
T Consensus       356 ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGk  434 (508)
T KOG0275|consen  356 FTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGK  434 (508)
T ss_pred             EcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCC
Confidence            999999999999999999999999999988875  4457888887775 467888888899999998 6888888863  


Q ss_pred             -CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214          463 -HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  534 (768)
Q Consensus       463 -~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~  534 (768)
                       ..+...+.+.+|.|.++.+.+.|+.++.|.+.+|..-.++..|...|..++-+|..+.||+-++||.+++|.
T Consensus       435 REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  435 REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence             234567788999999999999999999999999999999999999999999999999999999999999996

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=2.4e-28  Score=244.54  Aligned_cols=283  Identities=23%  Similarity=0.364  Sum_probs=244.8

Q ss_pred             eEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeee--eeeCCccceEE-EeeeeecCCCEEEEEEeC
Q 004214          229 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY--VLAGHSEIVLC-LDTCALSSGKILIVTGSK  305 (768)
Q Consensus       229 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~--~~~~~~~~v~~-l~~~~~~~~~~~l~~~~~  305 (768)
                      ..+...+.||...|..++..  ++..++.++.||++++|+-...+.+.  .+.+|.+.+.+ ++  +...++..+++|+.
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~--~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~--y~e~~~~~l~~g~~   79 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVT--DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSIC--YAESDKGRLVVGGM   79 (745)
T ss_pred             ceeEEEeccCccchheeEec--CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccce--eccccCcceEeecc
Confidence            34567788999999888875  44588999999999999987665543  46777777766 44  54444445999999


Q ss_pred             CCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214          306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS  385 (768)
Q Consensus       306 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  385 (768)
                      |++|.+|...+..++..+.+|...|.++....++.  +++||+|.++++|....            ......+|...|.+
T Consensus        80 D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~------------l~~~l~gH~asVWA  145 (745)
T KOG0301|consen   80 DTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGE------------LVYSLQGHTASVWA  145 (745)
T ss_pred             cceEEEEecCCCCchhhhhccccceeeeecCCcCc--eEecccccceEEecchh------------hhcccCCcchheee
Confidence            99999999999999999999999999999887754  89999999999998653            34447899999999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC
Q 004214          386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS  465 (768)
Q Consensus       386 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~  465 (768)
                      ++.-|.+ .+++|+.|.+|++|.-  ++.+.+|.+|...|+.+++-|++ .+++++.||.|++|++ +|.++.++.+|..
T Consensus       146 v~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn  220 (745)
T KOG0301|consen  146 VASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTN  220 (745)
T ss_pred             eeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccce
Confidence            9999988 8999999999999985  77889999999999999999865 4778899999999999 8999999999999


Q ss_pred             cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          466 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       466 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      .|.++....++..++++++|++++||+..  +|.+.+..+...||++.+-++|. +++|++||.|+||....
T Consensus       221 ~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  221 FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence            99999988889999999999999999876  89999986666999999988886 67888999999998773

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=2e-28  Score=236.38  Aligned_cols=212  Identities=15%  Similarity=0.226  Sum_probs=173.2

Q ss_pred             eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC
Q 004214          323 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR  402 (768)
Q Consensus       323 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  402 (768)
                      .++|...++|.+|+|..+..+++++.||++++|++........    ........+..-++++++|+|+|++||+|+.||
T Consensus       264 TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q----Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG  339 (641)
T KOG0772|consen  264 TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ----VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG  339 (641)
T ss_pred             cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee----EEeeccCCCcccCceeeecCCCcchhhhcccCC
Confidence            3689999999999999999999999999999999986532110    001111123445789999999999999999999


Q ss_pred             cEEEEeCCCCc---eEEEEeccCC--CeEEEEEccCCCEEEEeeCCCcEEEEeCCCC-ceeEEeecC--CCcEEEEEEEe
Q 004214          403 TACVWRLPDLV---SVVTFRGHKR--GIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGH--TSSVLRASFLT  474 (768)
Q Consensus       403 ~i~i~d~~~~~---~~~~~~~~~~--~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~--~~~v~~~~~s~  474 (768)
                      .|.+|+..+..   ....-..|..  .|+|+.||++|++|++-+.|+++++||++.. +++....+-  ..+-+.++|||
T Consensus       340 SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP  419 (641)
T KOG0772|consen  340 SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP  419 (641)
T ss_pred             ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC
Confidence            99999975542   2233345776  8999999999999999999999999999875 566665543  33567899999


Q ss_pred             CCCEEEEEeC------CCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          475 RGAQIVSCGA------DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       475 ~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      +.++|++|..      .|++.+||..+.+.+..+.-....|..+.|+|.-+.|.+|+.||.+++|-..+.
T Consensus       420 d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~  489 (641)
T KOG0772|consen  420 DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNE  489 (641)
T ss_pred             CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECccc
Confidence            9999999865      568999999999999999888889999999999999999999999999876554

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=4.4e-29  Score=230.81  Aligned_cols=334  Identities=15%  Similarity=0.246  Sum_probs=252.4

Q ss_pred             EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214          230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV  309 (768)
Q Consensus       230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i  309 (768)
                      +....+.||.+.|.+++-.|..-..+++|+.||.|++||+.+..+...+..|.+.|..+.  +..  .. +++++.|.+|
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~--v~~--~~-~~tvgdDKtv  131 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGIC--VTQ--TS-FFTVGDDKTV  131 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEE--ecc--cc-eEEecCCcce
Confidence            445567899999999999887778999999999999999999999999999999999996  333  33 8999999999


Q ss_pred             EEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214          310 RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA  389 (768)
Q Consensus       310 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  389 (768)
                      +.|.+... +..++-+ .+.+..+.-+..+. .++++|.  .|.|||....          .+...+.-....|.++.|+
T Consensus       132 K~wk~~~~-p~~tilg-~s~~~gIdh~~~~~-~FaTcGe--~i~IWD~~R~----------~Pv~smswG~Dti~svkfN  196 (433)
T KOG0268|consen  132 KQWKIDGP-PLHTILG-KSVYLGIDHHRKNS-VFATCGE--QIDIWDEQRD----------NPVSSMSWGADSISSVKFN  196 (433)
T ss_pred             eeeeccCC-cceeeec-cccccccccccccc-cccccCc--eeeecccccC----------CccceeecCCCceeEEecC
Confidence            99987763 4444432 23455555554433 6788776  4899998733          2444444456779999999


Q ss_pred             cC-CCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC-ceeEEeecCCCcE
Q 004214          390 PN-DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSV  467 (768)
Q Consensus       390 ~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~v  467 (768)
                      |. ...|++++.|+.|.+||+++..++..+. -...-+.++|+|..-.+++|++|..++.||++.- .++..+.+|.+.|
T Consensus       197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV  275 (433)
T KOG0268|consen  197 PVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV  275 (433)
T ss_pred             CCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeE
Confidence            95 4577788899999999999998887655 3445678999998888999999999999999874 6788889999999


Q ss_pred             EEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHHHHHHH
Q 004214          468 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFR  546 (768)
Q Consensus       468 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~  546 (768)
                      +++.|||.|+-+++|+.|.+|+||.+..+..-..+. .....|.++.||-|.+++++||.|+.|++|...-.+.......
T Consensus       276 ~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~t~  355 (433)
T KOG0268|consen  276 MDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVITP  355 (433)
T ss_pred             EEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCCCh
Confidence            999999999999999999999999998776544432 1235699999999999999999999999999876665443333


Q ss_pred             HHHHHHHhhhHHHHhhcccchHHHHHHHhhcCCchhHHHH
Q 004214          547 KEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFEL  586 (768)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  586 (768)
                      .+++.....+.+..-..  .+.+...+|-+-.-|..++..
T Consensus       356 rEk~~~~Y~e~Lke~y~--~~peIkRIarHR~lPk~i~~a  393 (433)
T KOG0268|consen  356 REKNKLEYNEALKERYK--HLPEIKRIARHRHLPKPIKKA  393 (433)
T ss_pred             hHHHHHHHHHHHHHHHh--hcHHHHHHHhhccCCHHHHHH
Confidence            33333333333322111  233444445554455544443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=1.7e-28  Score=259.14  Aligned_cols=311  Identities=23%  Similarity=0.343  Sum_probs=244.0

Q ss_pred             CCCcEEEEEEeeCCCccEEEEEe--CCCcEEEEECCC------------CeeEEEecCccceeEEEEEcCCCCEEEEEeC
Q 004214           29 HKGVVSSILFHPDTDKSLLFSGS--DDATVRVWDLLA------------KKCVATLDKHFSRVTSMAITSDGSTLISAGR   94 (768)
Q Consensus        29 h~~~V~~l~~spd~~~~~l~sg~--~dg~I~iWd~~~------------~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~   94 (768)
                      ++..|.++..+|||..  +|||+  .||.++||+...            .+.+.++..|.+.|+|+.|+|||+|||+|+.
T Consensus        12 ~~~~IfSIdv~pdg~~--~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD   89 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVK--FATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD   89 (942)
T ss_pred             CCeeEEEEEecCCcee--EecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence            3557999999999998  99999  899999998642            3456777889999999999999999999999


Q ss_pred             CCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeee
Q 004214           95 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE  174 (768)
Q Consensus        95 dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~  174 (768)
                      |+.|.||+.... .                 .+.                                              
T Consensus        90 D~~v~iW~~~~~-~-----------------~~~----------------------------------------------  105 (942)
T KOG0973|consen   90 DRLVMIWERAEI-G-----------------SGT----------------------------------------------  105 (942)
T ss_pred             cceEEEeeeccc-C-----------------Ccc----------------------------------------------
Confidence            999999986430 0                 000                                              


Q ss_pred             ecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCE
Q 004214          175 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY  254 (768)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  254 (768)
                                                     ++++..                                           
T Consensus       106 -------------------------------~fgs~g-------------------------------------------  111 (942)
T KOG0973|consen  106 -------------------------------VFGSTG-------------------------------------------  111 (942)
T ss_pred             -------------------------------cccccc-------------------------------------------
Confidence                                           000000                                           


Q ss_pred             EEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEE
Q 004214          255 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA  334 (768)
Q Consensus       255 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  334 (768)
                             |   .-+.+..++...+.+|...|..+.  +.|++. ++++++.|++|.+||..+...+..+.+|.+.|..+.
T Consensus       112 -------~---~~~vE~wk~~~~l~~H~~DV~Dv~--Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs  178 (942)
T KOG0973|consen  112 -------G---AKNVESWKVVSILRGHDSDVLDVN--WSPDDS-LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVS  178 (942)
T ss_pred             -------c---ccccceeeEEEEEecCCCccceec--cCCCcc-EEEEecccceEEEEccccceeeeeeecccccccceE
Confidence                   0   002344556668888999998887  666555 599999999999999999999999999999999999


Q ss_pred             EecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC----CCcEEEEeCC
Q 004214          335 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ----DRTACVWRLP  410 (768)
Q Consensus       335 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~i~d~~  410 (768)
                      |.|-|+ +|++-+.|++|++|++..........    .......-...+..+.|||||.+|++...    -.++.|.+-.
T Consensus       179 ~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It----~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~  253 (942)
T KOG0973|consen  179 WDPIGK-YFASQSDDRTLKVWRTSDWGIEKSIT----KPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG  253 (942)
T ss_pred             ECCccC-eeeeecCCceEEEEEcccceeeEeec----cchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecC
Confidence            999987 89999999999999976422111000    00000112345788999999999998643    2378899988


Q ss_pred             CCceEEEEeccCCCeEEEEEccC-----CC------------EEEEeeCCCcEEEEeCCCCceeEEee-cCCCcEEEEEE
Q 004214          411 DLVSVVTFRGHKRGIWSVEFSPV-----DQ------------VVITASGDKTIKIWSISDGSCLKTFE-GHTSSVLRASF  472 (768)
Q Consensus       411 ~~~~~~~~~~~~~~v~~v~~s~~-----~~------------~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~  472 (768)
                      +.+.-..+-||..+++++.|+|.     ..            .+|+|+.|++|-||.....+++.... -...+|.+++|
T Consensus       254 tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsW  333 (942)
T KOG0973|consen  254 TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSW  333 (942)
T ss_pred             CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeE
Confidence            88888999999999999999982     11            78999999999999997777765543 34678999999


Q ss_pred             EeCCCEEEEEeCCCcEEEEECCCCe
Q 004214          473 LTRGAQIVSCGADGLVKLWTVRTGE  497 (768)
Q Consensus       473 s~~~~~l~s~~~dg~i~iwd~~~~~  497 (768)
                      +|||..|+.++.||+|.++.+...+
T Consensus       334 spdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  334 SPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             cCCCCeEEEEecCCeEEEEEcchHH
Confidence            9999999999999999999987543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=6.2e-28  Score=228.37  Aligned_cols=282  Identities=20%  Similarity=0.267  Sum_probs=242.2

Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214          241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV  320 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  320 (768)
                      .+..+...+. .+.+++|+.|..+.++|..+.+.+..+.||...|+.+.  +.+... .+++++.|..|++|........
T Consensus       221 gi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~--~~~~~~-~v~~aSad~~i~vws~~~~s~~  296 (506)
T KOG0289|consen  221 GITALDIIPS-SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVK--FHKDLD-TVITASADEIIRVWSVPLSSEP  296 (506)
T ss_pred             CeeEEeecCC-CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEE--eccchh-heeecCCcceEEeeccccccCc
Confidence            3445555544 67899999999999999999999999999999999986  555554 4999999999999999888888


Q ss_pred             EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC
Q 004214          321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ  400 (768)
Q Consensus       321 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  400 (768)
                      .....|..+|+.+..+|.|. ||++++.||+..+.|++.+..        ..........-.+++.+|+|||.+|.+|+.
T Consensus       297 ~~~~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~--------lt~vs~~~s~v~~ts~~fHpDgLifgtgt~  367 (506)
T KOG0289|consen  297 TSSRPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQ--------LTVVSDETSDVEYTSAAFHPDGLIFGTGTP  367 (506)
T ss_pred             cccccccccceeeeeccCCc-EEEEecCCceEEEEEccCCcE--------EEEEeeccccceeEEeeEcCCceEEeccCC
Confidence            88889999999999999977 899999999999999986521        111111123356899999999999999999


Q ss_pred             CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC-CcEEEEEEEeCCCEE
Q 004214          401 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-SSVLRASFLTRGAQI  479 (768)
Q Consensus       401 dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l  479 (768)
                      ||.++|||+.+...+..|.+|.++|.+++|+.+|-+|++++.|+.|++||++..+..+++.-.. ..+.++.|.+.|.+|
T Consensus       368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L  447 (506)
T KOG0289|consen  368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYL  447 (506)
T ss_pred             CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeE
Confidence            9999999999999999999999999999999999999999999999999999988888876433 379999999999999


Q ss_pred             EEEeCCCcEEEEEC--CCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214          480 VSCGADGLVKLWTV--RTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       480 ~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~  535 (768)
                      +.++.|=+|++++-  ++..++..+..|.+..+.+.|....++++++|.|..++++.+
T Consensus       448 ~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  448 GIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             EeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            99987767777663  356788888889999999999999999999999999988754

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=1e-28  Score=223.35  Aligned_cols=252  Identities=21%  Similarity=0.306  Sum_probs=205.7

Q ss_pred             eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee--cccCcEEEEEEecCCCcEEEEEeCCCe
Q 004214          274 CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT--GHMGAVGAVAFSKKLQNFLVSGSSDHT  351 (768)
Q Consensus       274 ~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~  351 (768)
                      .++++..|.+.|.++.  |.|... +|++|+.|++|++||+......+.++  ....+|.++.|+|.|. +++.|..-.+
T Consensus       164 vIRTlYDH~devn~l~--FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~  239 (430)
T KOG0640|consen  164 VIRTLYDHVDEVNDLD--FHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPT  239 (430)
T ss_pred             eEeehhhccCccccee--ecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCc
Confidence            3457778999999997  666655 49999999999999997644333222  2457899999999977 8999999999


Q ss_pred             EEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec-cC-CCeEEEE
Q 004214          352 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HK-RGIWSVE  429 (768)
Q Consensus       352 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~-~~v~~v~  429 (768)
                      +++||+...+.-.       ....-..|...|+++.+++.|++.++|+.||.|++||--+++++.++.. |. ..|.+..
T Consensus       240 ~rlYdv~T~Qcfv-------sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~  312 (430)
T KOG0640|consen  240 LRLYDVNTYQCFV-------SANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAV  312 (430)
T ss_pred             eeEEeccceeEee-------ecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEE
Confidence            9999998653211       1112356889999999999999999999999999999999988887753 54 4789999


Q ss_pred             EccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC-----CcEEEEEEEeCCCEEEEEeC-CCcEEEEECCCCeEEEEe-
Q 004214          430 FSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATY-  502 (768)
Q Consensus       430 ~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~-  502 (768)
                      |..+|+++++.+.|..+++|.+.+++++..+.|..     ..-+...|+....|++.-.+ .+.+.-||.+++..+..+ 
T Consensus       313 Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s  392 (430)
T KOG0640|consen  313 FTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS  392 (430)
T ss_pred             EccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc
Confidence            99999999999999999999999999999987542     22345667777778776655 568999999998765544 


Q ss_pred             ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          503 DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       503 ~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      -+|++.+..+.-||.+..+++|+.|...++|...
T Consensus       393 lgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  393 LGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             cCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence            3799999999999999999999999999999754

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.3e-28  Score=244.43  Aligned_cols=353  Identities=19%  Similarity=0.324  Sum_probs=270.2

Q ss_pred             EEEeecCCCcEEEEECCCCE------EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC--eeEEEecCc
Q 004214            2 FALLEGADRKVLVWDVDGGF------CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK--KCVATLDKH   73 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~------~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~--~~~~~l~~h   73 (768)
                      ||.|||.||.|++|++....      +..++..|.+.|..++...+|+.  |+++|.|.+|++|+...+  -++.++..|
T Consensus        39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~t--lIS~SsDtTVK~W~~~~~~~~c~stir~H  116 (735)
T KOG0308|consen   39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKT--LISASSDTTVKVWNAHKDNTFCMSTIRTH  116 (735)
T ss_pred             eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCc--eEEecCCceEEEeecccCcchhHhhhhcc
Confidence            79999999999999994322      46788899999999999999887  999999999999999877  688899999


Q ss_pred             cceeEEEEE-cCCCCEEEEEeCCCeEEEEECCCCee--eeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcc
Q 004214           74 FSRVTSMAI-TSDGSTLISAGRDKVVNLWDLRDYSC--KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE  150 (768)
Q Consensus        74 ~~~V~~l~f-s~d~~~L~s~~~dg~i~vWd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (768)
                      ..-|.|+++ .++...+||||-|+.|.+||+.++..  +.++..                                    
T Consensus       117 ~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~------------------------------------  160 (735)
T KOG0308|consen  117 KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN------------------------------------  160 (735)
T ss_pred             cchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc------------------------------------
Confidence            999999999 78888999999999999999987632  111100                                    


Q ss_pred             eEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeE
Q 004214          151 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI  230 (768)
Q Consensus       151 ~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~  230 (768)
                                                                                                    ..
T Consensus       161 ------------------------------------------------------------------------------~t  162 (735)
T KOG0308|consen  161 ------------------------------------------------------------------------------VT  162 (735)
T ss_pred             ------------------------------------------------------------------------------cc
Confidence                                                                                          00


Q ss_pred             EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214          231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR  310 (768)
Q Consensus       231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~  310 (768)
                      ......|+...|++++-.+ .+..++.|+..+.+++||..+...+..+.+|+..|.++.  ...+|.. +++++.||+|+
T Consensus       163 ~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll--~~dDGt~-~ls~sSDgtIr  238 (735)
T KOG0308|consen  163 VNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLL--VNDDGTR-LLSASSDGTIR  238 (735)
T ss_pred             cccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEE--EcCCCCe-EeecCCCceEE
Confidence            0001114556677777653 557888899999999999999999999999999999996  5566665 99999999999


Q ss_pred             EEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214          311 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP  390 (768)
Q Consensus       311 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  390 (768)
                      +||+...+++.++..|...|+++..+|+-. .+++|+.||.|..=|+++..          ..........+|..+..+.
T Consensus       239 lWdLgqQrCl~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n~~----------~~tlick~daPv~~l~~~~  307 (735)
T KOG0308|consen  239 LWDLGQQRCLATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRNPA----------KSTLICKEDAPVLKLHLHE  307 (735)
T ss_pred             eeeccccceeeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccCCch----------hheEeecCCCchhhhhhcc
Confidence            999999999999999999999999998855 79999999999999988531          1122223345666677765


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEE
Q 004214          391 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA  470 (768)
Q Consensus       391 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  470 (768)
                      ..+-+-+++.|+.|+-|..+-..               .+++.+.+.. -+.|......+... .+-..+.| ..++...
T Consensus       308 ~~~~~WvtTtds~I~rW~~~~~~---------------~l~~s~~~~~-~~T~~~~~~~~~~~-tp~~vi~G-g~ai~k~  369 (735)
T KOG0308|consen  308 HDNSVWVTTTDSSIKRWKLEPDI---------------ALSVSGDLDF-FSTDSNNHSCDLTN-TPDSVIPG-GAAIKKH  369 (735)
T ss_pred             ccCCceeeeccccceecCCcccc---------------ccccCCCCCc-ccccCCCccccccC-CCceeccC-chhhhhh
Confidence            55555778899999999754221               3444455444 33444444544321 33333332 3456667


Q ss_pred             EEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 004214          471 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYD  503 (768)
Q Consensus       471 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  503 (768)
                      ++..|.+++++-...|.+.+||+-....+..+.
T Consensus       370 ~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g  402 (735)
T KOG0308|consen  370 AMLNDKRHVLTKDAKGNVALWDILACVKVEDFG  402 (735)
T ss_pred             hhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence            777899999999999999999998777666553

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3.8e-27  Score=225.18  Aligned_cols=239  Identities=28%  Similarity=0.477  Sum_probs=201.7

Q ss_pred             CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCC
Q 004214          280 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG  359 (768)
Q Consensus       280 ~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  359 (768)
                      +|...+.+++  .++++++ |++|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.. .+-+++++.|++|++|+++ 
T Consensus       200 ~h~keil~~a--vS~Dgky-latgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~-  274 (479)
T KOG0299|consen  200 GHVKEILTLA--VSSDGKY-LATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG-TSELYSASADRSVKVWSID-  274 (479)
T ss_pred             cccceeEEEE--EcCCCcE-EEecCCCceEEEecCcccchhhcccccccceeeeeeecC-ccceeeeecCCceEEEehh-
Confidence            6777888886  6677775 999999999999999999999999999999999999776 4569999999999999998 


Q ss_pred             CCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEE
Q 004214          360 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVIT  439 (768)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t  439 (768)
                               ......++.+|.+.|.++....-++.+.+|+.|+++++|++... ....+.+|.+.+-|++|-. ...+++
T Consensus       275 ---------~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In-~~Hfvs  343 (479)
T KOG0299|consen  275 ---------QLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN-DEHFVS  343 (479)
T ss_pred             ---------HhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec-ccceee
Confidence                     44466677899999999999999999999999999999999543 3445788999999999986 557899


Q ss_pred             eeCCCcEEEEeCCCCceeEEee-c-----------CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC----eEEEEec
Q 004214          440 ASGDKTIKIWSISDGSCLKTFE-G-----------HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG----ECIATYD  503 (768)
Q Consensus       440 ~~~d~~i~iwd~~~~~~~~~~~-~-----------~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~  503 (768)
                      |+.+|.|.+|++...+++.+.. +           +..+|++++..|...++++|+.+|.|++|-+..|    +++..+.
T Consensus       344 GSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls  423 (479)
T KOG0299|consen  344 GSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS  423 (479)
T ss_pred             ccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc
Confidence            9999999999999988887664 1           2238999999999999999999999999999887    4566665


Q ss_pred             cCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEEc
Q 004214          504 KHEDKIWALAVGKKTEMFATG-GSDALVNLWHD  535 (768)
Q Consensus       504 ~~~~~v~~l~~s~~~~~l~s~-~~dg~v~vw~~  535 (768)
                       -.+-|++++|+++|+.+++| |....+-=|-.
T Consensus       424 -~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~  455 (479)
T KOG0299|consen  424 -LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC  455 (479)
T ss_pred             -cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence             67889999999999966655 44544544543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3.2e-27  Score=225.61  Aligned_cols=286  Identities=26%  Similarity=0.391  Sum_probs=226.4

Q ss_pred             EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeE----EE------------e--cCccceeEEEEEcC
Q 004214           23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV----AT------------L--DKHFSRVTSMAITS   84 (768)
Q Consensus        23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~----~~------------l--~~h~~~V~~l~fs~   84 (768)
                      ...+..|.-+|+||+++||.++  +++++.+|+|.=|++.+|+..    .+            .  ++|...|.+++.|+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~--~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~  212 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKR--VFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS  212 (479)
T ss_pred             ceeeccccCcceEEEeeccccc--eeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence            5667789999999999999998  999999999999999887633    11            1  27888999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEE
Q 004214           85 DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM  164 (768)
Q Consensus        85 d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i  164 (768)
                      ||+||++++.|..|.||+.++.+.++.                                                     
T Consensus       213 Dgkylatgg~d~~v~Iw~~~t~ehv~~-----------------------------------------------------  239 (479)
T KOG0299|consen  213 DGKYLATGGRDRHVQIWDCDTLEHVKV-----------------------------------------------------  239 (479)
T ss_pred             CCcEEEecCCCceEEEecCcccchhhc-----------------------------------------------------
Confidence            999999999999999999988654433                                                     


Q ss_pred             EEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeE
Q 004214          165 WNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILD  244 (768)
Q Consensus       165 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  244 (768)
                                                                                            +.+|.+.|.+
T Consensus       240 ----------------------------------------------------------------------~~ghr~~V~~  249 (479)
T KOG0299|consen  240 ----------------------------------------------------------------------FKGHRGAVSS  249 (479)
T ss_pred             ----------------------------------------------------------------------ccccccceee
Confidence                                                                                  3356667777


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee
Q 004214          245 LKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT  324 (768)
Q Consensus       245 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  324 (768)
                      ++|- .+...+++++.|+.|.+|+++....+.++.+|.+.|..++  .....+. +.+|+.|+++++|++.. .....+.
T Consensus       250 L~fr-~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id--aL~reR~-vtVGgrDrT~rlwKi~e-esqlifr  324 (479)
T KOG0299|consen  250 LAFR-KGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID--ALSRERC-VTVGGRDRTVRLWKIPE-ESQLIFR  324 (479)
T ss_pred             eeee-cCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec--hhcccce-EEeccccceeEEEeccc-cceeeee
Confidence            7776 3566788889999999999999999999999999999998  6666654 77777999999999944 3444677


Q ss_pred             cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccc--eeeEeeccCCCeEEEEEccCCCEEEEEeCCC
Q 004214          325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK--AKAVVAAHGKDINSLAVAPNDSLVCTGSQDR  402 (768)
Q Consensus       325 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  402 (768)
                      +|.+.+.|++|-.+.  .+++|+.+|.|.+|++..............  +......++..|++++..|...++|+|+.+|
T Consensus       325 g~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G  402 (479)
T KOG0299|consen  325 GGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSG  402 (479)
T ss_pred             CCCCCeeeEEEeccc--ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCC
Confidence            899999999998763  599999999999999875432211110000  0001122334799999999999999999999


Q ss_pred             cEEEEeCCCC----ceEEEEeccCCCeEEEEEccCCCEEEEee
Q 004214          403 TACVWRLPDL----VSVVTFRGHKRGIWSVEFSPVDQVVITAS  441 (768)
Q Consensus       403 ~i~i~d~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~t~~  441 (768)
                      .|++|-+.++    .++..+. -.+-|++++|+++|+.+++|.
T Consensus       403 ~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  403 CVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             ceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence            9999998876    3444444 567899999999999776664

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.9e-28  Score=241.99  Aligned_cols=289  Identities=18%  Similarity=0.321  Sum_probs=236.6

Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEECCCce------eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc-
Q 004214          245 LKFLGEEEQYLAVATNIEQVQVYDLSSMS------CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-  317 (768)
Q Consensus       245 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~------~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-  317 (768)
                      +....+++++|.+|+.||.|++|+.....      ....++.|.+.|..+.  ....++. |++++.|-+|++|+...+ 
T Consensus        30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDii--L~~~~~t-lIS~SsDtTVK~W~~~~~~  106 (735)
T KOG0308|consen   30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDII--LCGNGKT-LISASSDTTVKVWNAHKDN  106 (735)
T ss_pred             ccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHH--hhcCCCc-eEEecCCceEEEeecccCc
Confidence            34455788899999999999999986432      3567788999999986  3344555 999999999999999877 


Q ss_pred             -eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe-eccCCCeEEEEEccCCCEE
Q 004214          318 -CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLV  395 (768)
Q Consensus       318 -~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l  395 (768)
                       -++..+..|...|.|+++-.....++++||-|+.|.+||+..+................ .++..+|.+++.++.|..+
T Consensus       107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~i  186 (735)
T KOG0308|consen  107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTII  186 (735)
T ss_pred             chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEE
Confidence             57778889999999999944346689999999999999999763311111111122222 2788999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeC
Q 004214          396 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR  475 (768)
Q Consensus       396 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  475 (768)
                      ++|+..+.+++||.++.+.+..++||...|.++..++||+.+++++.||+|++||+...+|+.++..|...|.++..+|+
T Consensus       187 vsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~s  266 (735)
T KOG0308|consen  187 VSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPS  266 (735)
T ss_pred             EecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          476 GAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       476 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      -..+++|+.||.|..=|+++......+.....+|..+..+...+-+-+++.|+.|.-|...
T Consensus       267 f~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  267 FTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             cceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence            9999999999999999999854333333356667777666554544666677788877654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=4.7e-27  Score=212.41  Aligned_cols=275  Identities=25%  Similarity=0.346  Sum_probs=213.7

Q ss_pred             cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCC-CeeE-EEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004214           28 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-KKCV-ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD  105 (768)
Q Consensus        28 gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~-~~~~-~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~  105 (768)
                      ...+.|.+|+|||.. ..+++.||.||+||+|+++. |..+ .....|.++|.+++|+.||..+++++.|+.+++||+.+
T Consensus        25 pP~DsIS~l~FSP~~-~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   25 PPEDSISALAFSPQA-DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             CcccchheeEecccc-CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence            467899999999943 34577999999999999976 4443 33456999999999999999999999999999999987


Q ss_pred             CeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeeccc
Q 004214          106 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE  185 (768)
Q Consensus       106 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~  185 (768)
                      ++..                                                                            
T Consensus       104 ~Q~~----------------------------------------------------------------------------  107 (347)
T KOG0647|consen  104 GQVS----------------------------------------------------------------------------  107 (347)
T ss_pred             CCee----------------------------------------------------------------------------
Confidence            6421                                                                            


Q ss_pred             ccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004214          186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ  265 (768)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~  265 (768)
                                                                                                      
T Consensus       108 --------------------------------------------------------------------------------  107 (347)
T KOG0647|consen  108 --------------------------------------------------------------------------------  107 (347)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEE
Q 004214          266 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS  345 (768)
Q Consensus       266 i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  345 (768)
                                 .+..|..+|.++.|..... -..|+||+.|.+|+.||++...++..+.- .+.+.++..-..   ++++
T Consensus       108 -----------~v~~Hd~pvkt~~wv~~~~-~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~~p---m~vV  171 (347)
T KOG0647|consen  108 -----------QVAAHDAPVKTCHWVPGMN-YQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVLYP---MAVV  171 (347)
T ss_pred             -----------eeeecccceeEEEEecCCC-cceeEecccccceeecccCCCCeeeeeec-cceeeehhccCc---eeEE
Confidence                       1122334444443111111 23499999999999999999888877663 456666665443   7899


Q ss_pred             EeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC--ceEEEEeccCC
Q 004214          346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKR  423 (768)
Q Consensus       346 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~  423 (768)
                      +..++.|.+|++.+.....        ........-.++|++..++....+.|+-.|.+.+..+..+  +.-.+|+.|..
T Consensus       172 ata~r~i~vynL~n~~te~--------k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~  243 (347)
T KOG0647|consen  172 ATAERHIAVYNLENPPTEF--------KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRS  243 (347)
T ss_pred             EecCCcEEEEEcCCCcchh--------hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEecc
Confidence            9999999999997653221        1111123346789999999888899999999999998876  45556777762


Q ss_pred             ---------CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEe
Q 004214          424 ---------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG  483 (768)
Q Consensus       424 ---------~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  483 (768)
                               +|++++|+|....|+|++.||++.+||-.....+++.+.|..+|++..|+.+|.+++-+.
T Consensus       244 ~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  244 TNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             CCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence                     578899999999999999999999999988889999999999999999999999887653

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.3e-26  Score=209.20  Aligned_cols=290  Identities=15%  Similarity=0.228  Sum_probs=231.0

Q ss_pred             ceEEEEecCeEEEEeeccCc-----ccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeee
Q 004214          204 GLLCVTADQQLLLYTTVEVP-----EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL  278 (768)
Q Consensus       204 ~l~~~~~dg~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~  278 (768)
                      .+++++....|+-+.+...+     .....+...-....|.+.|++++.   ++.++++|++|.+|+|||+.+......+
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~~qlg~l   79 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKRKQLGIL   79 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe---cceeEeccCCCCcEEEEeccchhhhcce
Confidence            46778888888888877665     122334445556788899999997   5679999999999999999999999999


Q ss_pred             eCCccceEEEeeeeecCCC-EEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeC
Q 004214          279 AGHSEIVLCLDTCALSSGK-ILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF  357 (768)
Q Consensus       279 ~~~~~~v~~l~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  357 (768)
                      ..|.+.|+++.  |.++-. ..|++|+.||.|.+|+.....++..+++|.+.|+.++++|.++ +.++.+.|+.++.||+
T Consensus        80 l~HagsitaL~--F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNL  156 (362)
T KOG0294|consen   80 LSHAGSITALK--FYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNL  156 (362)
T ss_pred             eccccceEEEE--ecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehh
Confidence            99999999998  555432 1399999999999999999999999999999999999999976 7889999999999999


Q ss_pred             CCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEE
Q 004214          358 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV  437 (768)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  437 (768)
                      -.+.....           ..-....+.+.|+|.|.+++.++.+ .|-+|.+.+......+... ..+.|+.|-. +..|
T Consensus       157 V~Gr~a~v-----------~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~-~~~L  222 (362)
T KOG0294|consen  157 VRGRVAFV-----------LNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFLD-GSEL  222 (362)
T ss_pred             hcCcccee-----------eccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeecC-CceE
Confidence            76532211           1112233459999999999998876 5899999887766655432 4566776664 6789


Q ss_pred             EEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEE--EeCCCEEEEEeCCCcEEEEECCCC-----eEEEEeccCCCcEE
Q 004214          438 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF--LTRGAQIVSCGADGLVKLWTVRTG-----ECIATYDKHEDKIW  510 (768)
Q Consensus       438 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~  510 (768)
                      ++|+.|+.|++||..+..+...+.+|...|-++.+  .|++.+|++++.||.|+|||++..     +++..+. -..+++
T Consensus       223 ~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n-~~~Rlt  301 (362)
T KOG0294|consen  223 LVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELN-TNVRLT  301 (362)
T ss_pred             EEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEee-cCCccc
Confidence            99999999999999999999999999999999985  467889999999999999999865     3444444 244455


Q ss_pred             EEEE
Q 004214          511 ALAV  514 (768)
Q Consensus       511 ~l~~  514 (768)
                      |+..
T Consensus       302 Cl~~  305 (362)
T KOG0294|consen  302 CLRV  305 (362)
T ss_pred             eeee
Confidence            5543

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=2.1e-26  Score=242.26  Aligned_cols=234  Identities=16%  Similarity=0.258  Sum_probs=190.7

Q ss_pred             EEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC
Q 004214          302 TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK  381 (768)
Q Consensus       302 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  381 (768)
                      .|+.++.|++|+......+..+.+|.++|.+++|+|+...+|++|+.||+|++||+.........  ...+...+.+|..
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~--i~~p~~~L~gH~~  126 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE--IKDPQCILKGHKK  126 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc--cccceEEeecCCC
Confidence            35667899999998888888999999999999999986668999999999999999754211100  0123345678999


Q ss_pred             CeEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214          382 DINSLAVAPNDSL-VCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF  460 (768)
Q Consensus       382 ~i~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~  460 (768)
                      .|.+++|+|++.. +++++.|++|++||+++++....+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+.++
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF  205 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence            9999999998875 5789999999999999998877776 6678999999999999999999999999999999999999


Q ss_pred             ecCCCcEEEEE-----EEeCCCEEEEEeCCC----cEEEEECCC-CeEEEEec--cCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214          461 EGHTSSVLRAS-----FLTRGAQIVSCGADG----LVKLWTVRT-GECIATYD--KHEDKIWALAVGKKTEMFATGGSDA  528 (768)
Q Consensus       461 ~~~~~~v~~~~-----~s~~~~~l~s~~~dg----~i~iwd~~~-~~~~~~~~--~~~~~v~~l~~s~~~~~l~s~~~dg  528 (768)
                      .+|.+.+....     |++++.+|++++.|+    .|+|||+++ ++++..+.  .+.+.+......++|.++++|+.|+
T Consensus       206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~  285 (568)
T PTZ00420        206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG  285 (568)
T ss_pred             ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence            99988754433     457889999988774    799999995 56666543  3334444444566799999999999


Q ss_pred             cEEEEEcCCH
Q 004214          529 LVNLWHDSTA  538 (768)
Q Consensus       529 ~v~vw~~~~~  538 (768)
                      .|++|++..+
T Consensus       286 tIr~~e~~~~  295 (568)
T PTZ00420        286 NCRYYQHSLG  295 (568)
T ss_pred             eEEEEEccCC
Confidence            9999999765

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=7.6e-27  Score=234.77  Aligned_cols=266  Identities=27%  Similarity=0.408  Sum_probs=227.8

Q ss_pred             ecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecC-ccceeEEEEEcC
Q 004214            6 EGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK-HFSRVTSMAITS   84 (768)
Q Consensus         6 g~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~-h~~~V~~l~fs~   84 (768)
                      -+.+..|.+|+..++........+...|+++.|+++|..  ||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. 
T Consensus       193 Valg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~--LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~-  269 (484)
T KOG0305|consen  193 VALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSH--LAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN-  269 (484)
T ss_pred             EEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCE--EEEeecCCeEEEEehhhccccccccCCcCceeEEEecc-
Confidence            345779999999999977777767999999999999998  99999999999999999999999999 99999999998 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEE
Q 004214           85 DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM  164 (768)
Q Consensus        85 d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i  164 (768)
                       +..+.+|+.|+.|..+|++..+..                                                       
T Consensus       270 -~~~lssGsr~~~I~~~dvR~~~~~-------------------------------------------------------  293 (484)
T KOG0305|consen  270 -SSVLSSGSRDGKILNHDVRISQHV-------------------------------------------------------  293 (484)
T ss_pred             -CceEEEecCCCcEEEEEEecchhh-------------------------------------------------------
Confidence             668889999999999987643200                                                       


Q ss_pred             EEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeE
Q 004214          165 WNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILD  244 (768)
Q Consensus       165 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  244 (768)
                                                                                                      
T Consensus       294 --------------------------------------------------------------------------------  293 (484)
T KOG0305|consen  294 --------------------------------------------------------------------------------  293 (484)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee
Q 004214          245 LKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT  324 (768)
Q Consensus       245 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  324 (768)
                                                    ...+.+|...|..+.  +.+++.. +++|+.|+.+.|||.....+...+.
T Consensus       294 ------------------------------~~~~~~H~qeVCgLk--ws~d~~~-lASGgnDN~~~Iwd~~~~~p~~~~~  340 (484)
T KOG0305|consen  294 ------------------------------VSTLQGHRQEVCGLK--WSPDGNQ-LASGGNDNVVFIWDGLSPEPKFTFT  340 (484)
T ss_pred             ------------------------------hhhhhcccceeeeeE--ECCCCCe-eccCCCccceEeccCCCccccEEEe
Confidence                                          002456777788886  5566665 9999999999999998888999999


Q ss_pred             cccCcEEEEEEecCCCcEEEEEe--CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE--eC
Q 004214          325 GHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG--SQ  400 (768)
Q Consensus       325 ~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~  400 (768)
                      .|.+.|.+++|+|-...+||+|+  .|+.|++||...+..           .........|.++.|++..+.|+++  ..
T Consensus       341 ~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-----------i~~vdtgsQVcsL~Wsk~~kEi~sthG~s  409 (484)
T KOG0305|consen  341 EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-----------IDSVDTGSQVCSLIWSKKYKELLSTHGYS  409 (484)
T ss_pred             ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE-----------ecccccCCceeeEEEcCCCCEEEEecCCC
Confidence            99999999999999888999986  599999999985531           1123356789999999998777764  45


Q ss_pred             CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214          401 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG  454 (768)
Q Consensus       401 dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~  454 (768)
                      +..|.||+..+.+.+..+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus       410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  410 ENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            678999999999999999999999999999999999999999999999998664

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.1e-27  Score=246.68  Aligned_cols=215  Identities=22%  Similarity=0.318  Sum_probs=175.8

Q ss_pred             EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214          231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR  310 (768)
Q Consensus       231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~  310 (768)
                      ....+.||.+.|.++.|+  ..++|++++.|.+|++|++....|+..+. |.+.|+|++  |.|-+..+|++|+-||.|+
T Consensus       361 P~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa--FnPvDDryFiSGSLD~KvR  435 (712)
T KOG0283|consen  361 PFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA--FNPVDDRYFISGSLDGKVR  435 (712)
T ss_pred             chhhhhccchhheecccc--cCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE--ecccCCCcEeecccccceE
Confidence            345678999999999998  56799999999999999999999997775 999999999  8998888999999999999


Q ss_pred             EEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214          311 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP  390 (768)
Q Consensus       311 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  390 (768)
                      ||++...+.+.-...+ .-|++++|.|+|+ ..+.|+.+|.+++|+................... ..| ..|+.+.|.|
T Consensus       436 iWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk-~~~-~rITG~Q~~p  511 (712)
T KOG0283|consen  436 LWSISDKKVVDWNDLR-DLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK-KQG-KRITGLQFFP  511 (712)
T ss_pred             EeecCcCeeEeehhhh-hhheeEEeccCCc-eEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc-ccC-ceeeeeEecC
Confidence            9999988877655544 8899999999977 7999999999999998865322221111111111 112 3899999998


Q ss_pred             C-CCEEEEEeCCCcEEEEeCCCCceEEEEeccCC--CeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214          391 N-DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR--GIWSVEFSPVDQVVITASGDKTIKIWSISDG  454 (768)
Q Consensus       391 ~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~  454 (768)
                      . ...+++.+.|..|+|||.++..++..|+|+..  .-....|+.||++|++++.|..|+||++...
T Consensus       512 ~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  512 GDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             CCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence            3 44677789999999999999889888887543  3356789999999999999999999998443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=2.6e-27  Score=226.63  Aligned_cols=254  Identities=20%  Similarity=0.365  Sum_probs=217.4

Q ss_pred             eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce----------EEEeeecccCcEEEEEEecCCCcEEEEEeC
Q 004214          279 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC----------CVGVGTGHMGAVGAVAFSKKLQNFLVSGSS  348 (768)
Q Consensus       279 ~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  348 (768)
                      -.|.+.|..+.  +.|.+..++++++..+.|.|||...-.          +-..+.+|...-.+++|++.....+++++.
T Consensus       121 i~h~gEVnRaR--ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~  198 (422)
T KOG0264|consen  121 INHDGEVNRAR--YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD  198 (422)
T ss_pred             ccCCccchhhh--hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence            45788888887  778888889999999999999976421          122677898888889999988889999999


Q ss_pred             CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCC--CCceEEEEeccCCCe
Q 004214          349 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLP--DLVSVVTFRGHKRGI  425 (768)
Q Consensus       349 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v  425 (768)
                      |++|.+||+......   .....+...+.+|...|..++|+| +..++++++.|+.+.|||++  +.++.....+|..+|
T Consensus       199 d~~i~lwdi~~~~~~---~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v  275 (422)
T KOG0264|consen  199 DHTICLWDINAESKE---DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV  275 (422)
T ss_pred             CCcEEEEeccccccC---CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence            999999999876543   224557778899999999999999 67789999999999999999  667777888999999


Q ss_pred             EEEEEccC-CCEEEEeeCCCcEEEEeCCCC-ceeEEeecCCCcEEEEEEEeCC-CEEEEEeCCCcEEEEECCC-------
Q 004214          426 WSVEFSPV-DQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRT-------  495 (768)
Q Consensus       426 ~~v~~s~~-~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~-------  495 (768)
                      +|++|+|- +.+||||+.|++|++||+++- .++.++.+|...|.++.|+|.. ..|++++.|+.+.|||+..       
T Consensus       276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~  355 (422)
T KOG0264|consen  276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP  355 (422)
T ss_pred             eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence            99999995 578899999999999999885 5889999999999999999964 5789999999999999863       


Q ss_pred             -------CeEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCcEEEEEcCC
Q 004214          496 -------GECIATYDKHEDKIWALAVGKKTEM-FATGGSDALVNLWHDST  537 (768)
Q Consensus       496 -------~~~~~~~~~~~~~v~~l~~s~~~~~-l~s~~~dg~v~vw~~~~  537 (768)
                             .+++....+|...|..+.|+|+..+ +++.++|+.+.||+...
T Consensus       356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence                   2456777899999999999998775 66889999999999873

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=3.3e-26  Score=240.30  Aligned_cols=215  Identities=20%  Similarity=0.290  Sum_probs=178.9

Q ss_pred             eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC-CEEEEEeC
Q 004214          322 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQ  400 (768)
Q Consensus       322 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~  400 (768)
                      .+.+|.+.|.+++|+|....+|++|+.|++|++||+.......   ........+.+|...|.+++|+|++ .+|++|+.
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~---~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~  146 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ---NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA  146 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc---ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence            4678999999999999435589999999999999997542111   0122455678899999999999975 79999999


Q ss_pred             CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCc-EEEEEEEeCCCEE
Q 004214          401 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS-VLRASFLTRGAQI  479 (768)
Q Consensus       401 dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l  479 (768)
                      |++|++||+.+++.+..+.+|...|.+++|+|+|.+|++++.|++|+|||+++++.+.++.+|.+. +..+.|.+++..+
T Consensus       147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i  226 (493)
T PTZ00421        147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI  226 (493)
T ss_pred             CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence            999999999999999999999999999999999999999999999999999999999999999865 4567899988888


Q ss_pred             EEEe----CCCcEEEEECCCCe-EEEEeccC-CCcEEEEEEcCCCCEEEEEe-CCCcEEEEEcCCHH
Q 004214          480 VSCG----ADGLVKLWTVRTGE-CIATYDKH-EDKIWALAVGKKTEMFATGG-SDALVNLWHDSTAA  539 (768)
Q Consensus       480 ~s~~----~dg~i~iwd~~~~~-~~~~~~~~-~~~v~~l~~s~~~~~l~s~~-~dg~v~vw~~~~~~  539 (768)
                      ++++    .|+.|++||+++.. ++.....+ ...+....|++++.+|++++ .||.|++|++.++.
T Consensus       227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~  293 (493)
T PTZ00421        227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER  293 (493)
T ss_pred             EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence            7765    47899999998754 44444333 34566678999999999888 59999999998654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.8e-25  Score=192.13  Aligned_cols=299  Identities=20%  Similarity=0.307  Sum_probs=222.5

Q ss_pred             cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECC------CCe--------e-EEEecCccceeEEEEEcCCCCEEEEE
Q 004214           28 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL------AKK--------C-VATLDKHFSRVTSMAITSDGSTLISA   92 (768)
Q Consensus        28 gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~------~~~--------~-~~~l~~h~~~V~~l~fs~d~~~L~s~   92 (768)
                      .....|.+++|+|.|..  .|.|+...+.+|--..      .+.        . ...-+.|.+.|.|.+|||+|.+|+++
T Consensus        30 ~dsqairav~fhp~g~l--yavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg  107 (350)
T KOG0641|consen   30 EDSQAIRAVAFHPAGGL--YAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG  107 (350)
T ss_pred             cchhheeeEEecCCCce--EEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence            36789999999999887  8999999998887542      111        1 12235689999999999999999999


Q ss_pred             eCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCcee
Q 004214           93 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL  172 (768)
Q Consensus        93 ~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~  172 (768)
                      +.|.+|++.-+....+-.+-                                                            
T Consensus       108 sndk~ik~l~fn~dt~~~~g------------------------------------------------------------  127 (350)
T KOG0641|consen  108 SNDKTIKVLPFNADTCNATG------------------------------------------------------------  127 (350)
T ss_pred             CCCceEEEEecccccccccC------------------------------------------------------------
Confidence            99999988644321100000                                                            


Q ss_pred             eeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCC
Q 004214          173 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE  252 (768)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  252 (768)
                                                                                ....+.-|.+.|.+++|...  
T Consensus       128 ----------------------------------------------------------~dle~nmhdgtirdl~fld~--  147 (350)
T KOG0641|consen  128 ----------------------------------------------------------HDLEFNMHDGTIRDLAFLDD--  147 (350)
T ss_pred             ----------------------------------------------------------cceeeeecCCceeeeEEecC--
Confidence                                                                      00112224455556665421  


Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEE-eCCCeEEEEeCCCceEEEeeecccCcEE
Q 004214          253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG-SKDNSVRLWDSESRCCVGVGTGHMGAVG  331 (768)
Q Consensus       253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~  331 (768)
                                                             . ..++.+|+++ ..|..|++-|...++....+.+|++.|.
T Consensus       148 ---------------------------------------~-~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghil  187 (350)
T KOG0641|consen  148 ---------------------------------------P-ESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHIL  187 (350)
T ss_pred             ---------------------------------------C-CcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEE
Confidence                                                   1 1223334444 4577888889999999999999999998


Q ss_pred             EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004214          332 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD  411 (768)
Q Consensus       332 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~  411 (768)
                      ++.--.  ..++++|+.|.+|++||++-.............   -.-..+.|.++++.|.|++|++|-.|....+||++.
T Consensus       188 alyswn--~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~---~glessavaav~vdpsgrll~sg~~dssc~lydirg  262 (350)
T KOG0641|consen  188 ALYSWN--GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD---GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG  262 (350)
T ss_pred             EEEEec--CcEEEccCCCceEEEEeeeccceeeeccCcccC---CCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence            874332  338999999999999999854321110000000   001236789999999999999999999999999999


Q ss_pred             CceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC----ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCc
Q 004214          412 LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG----SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL  487 (768)
Q Consensus       412 ~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  487 (768)
                      ++++..+..|...|.|+.|+|.-.++++++.|..|++-|+...    -++.....|...+..+.|.|..--+++.+.|.+
T Consensus       263 ~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt  342 (350)
T KOG0641|consen  263 GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT  342 (350)
T ss_pred             CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcce
Confidence            9999999999999999999999999999999999999998532    233445579999999999999989999999999


Q ss_pred             EEEEEC
Q 004214          488 VKLWTV  493 (768)
Q Consensus       488 i~iwd~  493 (768)
                      +.+|-+
T Consensus       343 ~tlwa~  348 (350)
T KOG0641|consen  343 ATLWAL  348 (350)
T ss_pred             EEEecc
Confidence            999975

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=5.7e-26  Score=238.55  Aligned_cols=229  Identities=19%  Similarity=0.254  Sum_probs=188.2

Q ss_pred             eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc-------eEEEeeecccCcEEEEEEecCCCcEEEEEeCC
Q 004214          277 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD  349 (768)
Q Consensus       277 ~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  349 (768)
                      .+.+|.+.|.+++  +.+.++.+|++|+.||+|++||+.++       .++..+.+|...|.+++|+|.+.++|++++.|
T Consensus        70 ~l~GH~~~V~~v~--fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D  147 (493)
T PTZ00421         70 ILLGQEGPIIDVA--FNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD  147 (493)
T ss_pred             eEeCCCCCEEEEE--EcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence            4789999999998  66634445999999999999999764       35667889999999999999877799999999


Q ss_pred             CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCC-eEEE
Q 004214          350 HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRG-IWSV  428 (768)
Q Consensus       350 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~v  428 (768)
                      ++|++||+..+          .....+..|...|.+++|+|+|.+|++++.|++|++||+++++.+..+.+|... +..+
T Consensus       148 gtVrIWDl~tg----------~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~  217 (493)
T PTZ00421        148 MVVNVWDVERG----------KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRC  217 (493)
T ss_pred             CEEEEEECCCC----------eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEE
Confidence            99999999843          244556779999999999999999999999999999999999999999999765 4567


Q ss_pred             EEccCCCEEEEee----CCCcEEEEeCCCCc-eeEEeecC-CCcEEEEEEEeCCCEEEEEe-CCCcEEEEECCCCeEEEE
Q 004214          429 EFSPVDQVVITAS----GDKTIKIWSISDGS-CLKTFEGH-TSSVLRASFLTRGAQIVSCG-ADGLVKLWTVRTGECIAT  501 (768)
Q Consensus       429 ~~s~~~~~l~t~~----~d~~i~iwd~~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~  501 (768)
                      .|.+++..+++++    .|+.|++||+++.. ++.....+ ...+....|++++++|++++ .||.|++||+.+++++..
T Consensus       218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~  297 (493)
T PTZ00421        218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC  297 (493)
T ss_pred             EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence            8999888777654    47899999998764 44444433 34556677899999999888 499999999999988776


Q ss_pred             ecc-CCCcEEEEEEcCC
Q 004214          502 YDK-HEDKIWALAVGKK  517 (768)
Q Consensus       502 ~~~-~~~~v~~l~~s~~  517 (768)
                      ... +..++.+++|.|.
T Consensus       298 ~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        298 SSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             eeccCCCCCcceEeccc
Confidence            543 4456778888875

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=1.2e-26  Score=232.45  Aligned_cols=225  Identities=28%  Similarity=0.442  Sum_probs=196.9

Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee
Q 004214          245 LKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT  324 (768)
Q Consensus       245 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  324 (768)
                      ++|...++..+++|+.|..|.+|...+..+...+.+|...|.|++  ...++ . +++|+.|.++++|-.  +++...+.
T Consensus        64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls--~~~~~-~-~iSgSWD~TakvW~~--~~l~~~l~  137 (745)
T KOG0301|consen   64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLS--IGEDG-T-LISGSWDSTAKVWRI--GELVYSLQ  137 (745)
T ss_pred             ceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeee--cCCcC-c-eEecccccceEEecc--hhhhcccC
Confidence            556555666799999999999999999999999999999999986  33333 3 899999999999965  44556689


Q ss_pred             cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcE
Q 004214          325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTA  404 (768)
Q Consensus       325 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  404 (768)
                      +|+.+|++++..|.+  .+++|+.|.+|++|.-.            +...++.+|.+.|+.+++-|++ .+++++.||.|
T Consensus       138 gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~------------~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~I  202 (745)
T KOG0301|consen  138 GHTASVWAVASLPEN--TYVTGSADKTIKLWKGG------------TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSI  202 (745)
T ss_pred             CcchheeeeeecCCC--cEEeccCcceeeeccCC------------chhhhhccchhheeeeEEecCC-CeEeecCCceE
Confidence            999999999999986  59999999999999743            3667788999999999999875 47888999999


Q ss_pred             EEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeC
Q 004214          405 CVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA  484 (768)
Q Consensus       405 ~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  484 (768)
                      ++|++ +++.+..+.+|..-|.++...+++..++++++|++++||+..  .|.+.+.-....|+++.+.++| -+++|+.
T Consensus       203 r~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng-DIvvg~S  278 (745)
T KOG0301|consen  203 RLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG-DIVVGGS  278 (745)
T ss_pred             EEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC-CEEEecc
Confidence            99999 889999999999999999988889999999999999999975  8888888666799999999888 5778899


Q ss_pred             CCcEEEEECC
Q 004214          485 DGLVKLWTVR  494 (768)
Q Consensus       485 dg~i~iwd~~  494 (768)
                      ||.|+||...
T Consensus       279 DG~VrVfT~~  288 (745)
T KOG0301|consen  279 DGRVRVFTVD  288 (745)
T ss_pred             CceEEEEEec
Confidence            9999999875

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=8.2e-26  Score=237.87  Aligned_cols=247  Identities=15%  Similarity=0.210  Sum_probs=196.6

Q ss_pred             EeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce--------EEEeeecccCc
Q 004214          258 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC--------CVGVGTGHMGA  329 (768)
Q Consensus       258 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~  329 (768)
                      |+..+.+++|+......+..+.+|...|.+++  +.+.+..+|++|+.||.|++||+.++.        ++..+.+|...
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~la--fsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~  127 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQ--FNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK  127 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEE--EcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence            45568899999988888888999999999998  667655569999999999999997542        34467889999


Q ss_pred             EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004214          330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL  409 (768)
Q Consensus       330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~  409 (768)
                      |.+++|+|++..++++++.|++|++||+..+.          ..... .|...|.+++|+|+|.+|++++.|+.|++||+
T Consensus       128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~----------~~~~i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD~  196 (568)
T PTZ00420        128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK----------RAFQI-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDP  196 (568)
T ss_pred             EEEEEECCCCCeEEEEEeCCCeEEEEECCCCc----------EEEEE-ecCCcEEEEEECCCCCEEEEEecCCEEEEEEC
Confidence            99999999988778899999999999998542          12222 35678999999999999999999999999999


Q ss_pred             CCCceEEEEeccCCCeEE-----EEEccCCCEEEEeeCCC----cEEEEeCCC-CceeEEeec--CCCcEEEEEEEeCCC
Q 004214          410 PDLVSVVTFRGHKRGIWS-----VEFSPVDQVVITASGDK----TIKIWSISD-GSCLKTFEG--HTSSVLRASFLTRGA  477 (768)
Q Consensus       410 ~~~~~~~~~~~~~~~v~~-----v~~s~~~~~l~t~~~d~----~i~iwd~~~-~~~~~~~~~--~~~~v~~~~~s~~~~  477 (768)
                      ++++.+..+.+|.+.+.+     ..|++++.+|++++.|+    +|+|||+++ +.++..+..  +.+.+......++|.
T Consensus       197 Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~  276 (568)
T PTZ00420        197 RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL  276 (568)
T ss_pred             CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC
Confidence            999999999999876543     34568889999988764    799999985 566666542  333343344455688


Q ss_pred             EEEEEeCCCcEEEEECCCCeE--EEEeccCCCcEEEEEEcCCC
Q 004214          478 QIVSCGADGLVKLWTVRTGEC--IATYDKHEDKIWALAVGKKT  518 (768)
Q Consensus       478 ~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~~~  518 (768)
                      ++++|+.|+.|++|++..+..  +..+. +..++.+++|.|..
T Consensus       277 l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        277 IYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence            999999999999999987743  22222 56778899999964

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.9e-26  Score=209.72  Aligned_cols=244  Identities=22%  Similarity=0.423  Sum_probs=209.6

Q ss_pred             eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCC-cEEEEEeCCCeEE
Q 004214          275 SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ-NFLVSGSSDHTIK  353 (768)
Q Consensus       275 ~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~i~  353 (768)
                      ...++.|...+++++    -++. ++++|+.|-+|+|||+.+...+..+-.|.+.|+++.|.+... +.|++|+.||.|.
T Consensus        36 lF~~~aH~~sitavA----Vs~~-~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~  110 (362)
T KOG0294|consen   36 LFAFSAHAGSITALA----VSGP-YVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII  110 (362)
T ss_pred             cccccccccceeEEE----ecce-eEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence            455688999999997    2344 599999999999999999999999999999999999988642 3699999999999


Q ss_pred             EEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccC
Q 004214          354 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV  433 (768)
Q Consensus       354 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~  433 (768)
                      +|+..          .......+.+|...|+.++++|.+++-++.+.|+.++.||+-.|+.-..++- ...-+.+.|+|.
T Consensus       111 iw~~~----------~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~  179 (362)
T KOG0294|consen  111 IWRVG----------SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQ  179 (362)
T ss_pred             EEEcC----------CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCC
Confidence            99987          6678888999999999999999999999999999999999998877665552 233445999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEE
Q 004214          434 DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA  513 (768)
Q Consensus       434 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~  513 (768)
                      |.+++.++. ..|-||.+.+......+... ..+.++.|. ++..|++|+.|+.|.+||..+..+...+.+|..+|-++.
T Consensus       180 Gd~F~v~~~-~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~  256 (362)
T KOG0294|consen  180 GDHFVVSGR-NKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIA  256 (362)
T ss_pred             CCEEEEEec-cEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeE
Confidence            999988887 56999999888777776633 556666664 567999999999999999999999999999999999997


Q ss_pred             E--cCCCCEEEEEeCCCcEEEEEcCC
Q 004214          514 V--GKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       514 ~--s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      +  .|++.+|+|+|+||.|+|||+..
T Consensus       257 ~~~~~~~~~lvTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  257 SYTNPEHEYLVTASSDGFIKVWDIDM  282 (362)
T ss_pred             EEecCCceEEEEeccCceEEEEEccc
Confidence            4  46788999999999999999875

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=1.3e-26  Score=219.55  Aligned_cols=271  Identities=22%  Similarity=0.352  Sum_probs=225.2

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA   81 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~   81 (768)
                      ++.|||.|..+.++|..+++.+..|+||...|+.+.|+|+...  +++++.|-.|+||.............|.++|+.+.
T Consensus       233 ~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~--v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls  310 (506)
T KOG0289|consen  233 KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDT--VITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLS  310 (506)
T ss_pred             cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhh--eeecCCcceEEeeccccccCccccccccccceeee
Confidence            4689999999999999999999999999999999999998777  99999999999999998888888999999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcE
Q 004214           82 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI  161 (768)
Q Consensus        82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  161 (768)
                      ..|.|.||++++.|++..+.|++++.++......                                              
T Consensus       311 ~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~----------------------------------------------  344 (506)
T KOG0289|consen  311 LHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE----------------------------------------------  344 (506)
T ss_pred             eccCCcEEEEecCCceEEEEEccCCcEEEEEeec----------------------------------------------
Confidence            9999999999999999999888776533221100                                              


Q ss_pred             EEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCc
Q 004214          162 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE  241 (768)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (768)
                                                                                                      
T Consensus       345 --------------------------------------------------------------------------------  344 (506)
T KOG0289|consen  345 --------------------------------------------------------------------------------  344 (506)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE
Q 004214          242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG  321 (768)
Q Consensus       242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  321 (768)
                                                            ...-.+++..  +.| ++.+|.+|+.||.|++||+.++..+.
T Consensus       345 --------------------------------------~s~v~~ts~~--fHp-DgLifgtgt~d~~vkiwdlks~~~~a  383 (506)
T KOG0289|consen  345 --------------------------------------TSDVEYTSAA--FHP-DGLIFGTGTPDGVVKIWDLKSQTNVA  383 (506)
T ss_pred             --------------------------------------cccceeEEee--EcC-CceEEeccCCCceEEEEEcCCccccc
Confidence                                                  0001122332  444 44569999999999999999999999


Q ss_pred             eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC
Q 004214          322 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD  401 (768)
Q Consensus       322 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  401 (768)
                      .|.+|+++|..++|+.+|- ++++++.|+.|++||++....         ...........+.++.|++.|.+|+.++.|
T Consensus       384 ~Fpght~~vk~i~FsENGY-~Lat~add~~V~lwDLRKl~n---------~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~  453 (506)
T KOG0289|consen  384 KFPGHTGPVKAISFSENGY-WLATAADDGSVKLWDLRKLKN---------FKTIQLDEKKEVNSLSFDQSGTYLGIAGSD  453 (506)
T ss_pred             cCCCCCCceeEEEeccCce-EEEEEecCCeEEEEEehhhcc---------cceeeccccccceeEEEcCCCCeEEeecce
Confidence            9999999999999999965 899999999999999985431         112222233479999999999999999877


Q ss_pred             CcEEEEeC--CCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214          402 RTACVWRL--PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI  451 (768)
Q Consensus       402 g~i~i~d~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~  451 (768)
                      =.|++++-  .+...+..+..|.+..+++.|....+++++++.|..++++.+
T Consensus       454 l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  454 LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            66666653  256778888889999999999999999999999999988864

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=9.9e-26  Score=238.44  Aligned_cols=285  Identities=18%  Similarity=0.225  Sum_probs=239.7

Q ss_pred             ceeEEEEecCCCCEEEEEe--CCCcEEEEECCC------------ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC
Q 004214          241 EILDLKFLGEEEQYLAVAT--NIEQVQVYDLSS------------MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD  306 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~~--~~~~i~i~d~~~------------~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d  306 (768)
                      .|.++..+ +++..+++|+  .|+.+++|+...            ...+.....|.+.|.|+.  |.+++.+ ||+|+.|
T Consensus        15 ~IfSIdv~-pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR--~S~dG~~-lAsGSDD   90 (942)
T KOG0973|consen   15 SIFSIDVH-PDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVR--FSPDGSY-LASGSDD   90 (942)
T ss_pred             eEEEEEec-CCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEE--ECCCCCe-EeeccCc
Confidence            45666665 5889999999  789999998753            223445678999999997  7777776 9999999


Q ss_pred             CeEEEEeCCC------------------ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccc
Q 004214          307 NSVRLWDSES------------------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM  368 (768)
Q Consensus       307 g~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  368 (768)
                      +.|.+|....                  .+.+..+.+|.+.|..++|+|++. ++++++.|++|.+|+..          
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~----------  159 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAK----------  159 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccc----------
Confidence            9999998762                  235677889999999999999866 99999999999999987          


Q ss_pred             ccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC------CCeEEEEEccCCCEEEEeeC
Q 004214          369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK------RGIWSVEFSPVDQVVITASG  442 (768)
Q Consensus       369 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~v~~v~~s~~~~~l~t~~~  442 (768)
                      .......+.+|...|..+.|+|-|++||+-+.|++|++|++.+......+.++.      ..+..+.|||||++|++...
T Consensus       160 tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  160 TFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             cceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence            446788889999999999999999999999999999999988877766666543      35788999999999998643


Q ss_pred             ----CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeC------C-------C----EEEEEeCCCcEEEEECCCCeEEEE
Q 004214          443 ----DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------G-------A----QIVSCGADGLVKLWTVRTGECIAT  501 (768)
Q Consensus       443 ----d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~------~-------~----~l~s~~~dg~i~iwd~~~~~~~~~  501 (768)
                          -.++.|.+-.+.+.-..|-||.+++.++.|+|.      .       +    .+|+|+.|++|.||.....+++..
T Consensus       240 ~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~v  319 (942)
T KOG0973|consen  240 VNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFV  319 (942)
T ss_pred             ccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhh
Confidence                356889998888888999999999999999972      1       1    578999999999999988887766


Q ss_pred             ec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214          502 YD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE  540 (768)
Q Consensus       502 ~~-~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~  540 (768)
                      +. -....|..|+|+|||..|++++.||+|.+..+...+.
T Consensus       320 i~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  320 IHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             hhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence            53 2457899999999999999999999999999887654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.6e-25  Score=202.55  Aligned_cols=270  Identities=20%  Similarity=0.256  Sum_probs=214.7

Q ss_pred             cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc-ee-eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214          238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-SC-SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE  315 (768)
Q Consensus       238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~-~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~  315 (768)
                      ..+.|.+++|+|....++++++.|++|++|+++.. .. .+....|.++|.+++  |..++.. +++|+.|+.+++||+.
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~--Wsddgsk-Vf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVC--WSDDGSK-VFSGGCDKQAKLWDLA  102 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEE--EccCCce-EEeeccCCceEEEEcc
Confidence            35679999999988889999999999999999873 32 345677999999986  6666655 9999999999999999


Q ss_pred             CceEEEeeecccCcEEEEEEecCCC-cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE
Q 004214          316 SRCCVGVGTGHMGAVGAVAFSKKLQ-NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL  394 (768)
Q Consensus       316 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  394 (768)
                      +++ +..+..|.++|.++.|-+... .+|++|++|++|++||++...          +.... .-...+.++.  --..+
T Consensus       103 S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~----------pv~t~-~LPeRvYa~D--v~~pm  168 (347)
T KOG0647|consen  103 SGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN----------PVATL-QLPERVYAAD--VLYPM  168 (347)
T ss_pred             CCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC----------eeeee-eccceeeehh--ccCce
Confidence            994 555678999999999976532 478999999999999998432          22111 1223344433  34568


Q ss_pred             EEEEeCCCcEEEEeCCCCceEE-EE-eccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC--ceeEEeecCCC-----
Q 004214          395 VCTGSQDRTACVWRLPDLVSVV-TF-RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG--SCLKTFEGHTS-----  465 (768)
Q Consensus       395 l~~~~~dg~i~i~d~~~~~~~~-~~-~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~-----  465 (768)
                      ++++..++.|.+|+++++.... .. ..-.-.+.|++..++....+.|+-.|.+-|..+..+  +.-.+|+.|..     
T Consensus       169 ~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~  248 (347)
T KOG0647|consen  169 AVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVN  248 (347)
T ss_pred             eEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCC
Confidence            8999999999999997653221 11 112346889999999888899999999999999887  44455666652     


Q ss_pred             ----cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 004214          466 ----SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG  524 (768)
Q Consensus       466 ----~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~  524 (768)
                          .|++++|+|.-..|+++|.||++.+||-+....+.+...|..+|++.+|+.+|.++|-+
T Consensus       249 ~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  249 DDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             CceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence                67889999999999999999999999999888999999999999999999999988744

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=5.7e-26  Score=217.45  Aligned_cols=252  Identities=25%  Similarity=0.441  Sum_probs=213.1

Q ss_pred             eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce----------eeeeeeCCccceEEEeeeeecCCCEEEEE
Q 004214          233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS----------CSYVLAGHSEIVLCLDTCALSSGKILIVT  302 (768)
Q Consensus       233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~----------~~~~~~~~~~~v~~l~~~~~~~~~~~l~~  302 (768)
                      .....|.++|..+.+.|.+...+|+.+..+.++|||..+-.          ....+.+|...-+++.  +.+.....+++
T Consensus       118 ~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~gls--Wn~~~~g~Lls  195 (422)
T KOG0264|consen  118 SQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLS--WNRQQEGTLLS  195 (422)
T ss_pred             EEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccc--cccccceeEee
Confidence            34567889999999999999999999999999999986432          1226788988767776  66666667999


Q ss_pred             EeCCCeEEEEeCCCc-------eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE
Q 004214          303 GSKDNSVRLWDSESR-------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV  375 (768)
Q Consensus       303 ~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  375 (768)
                      |+.|++|++||+...       .+...+.+|...|..++|++....+|++++.|+.+.|||++..        ..+....
T Consensus       196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--------~~~~~~~  267 (422)
T KOG0264|consen  196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--------TSKPSHS  267 (422)
T ss_pred             ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--------CCCCccc
Confidence            999999999998743       2456788999999999999998889999999999999999853        2335566


Q ss_pred             eeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC-ceEEEEeccCCCeEEEEEccC-CCEEEEeeCCCcEEEEeCC
Q 004214          376 VAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSIS  452 (768)
Q Consensus       376 ~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~~-~~~l~t~~~d~~i~iwd~~  452 (768)
                      ..+|...|+|++|+| ++..||+|+.|++|.+||+++. +++.++.+|...|.+|.|||. ...||+++.|+.+.|||+.
T Consensus       268 ~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  268 VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence            688999999999999 7788999999999999999986 577889999999999999997 5789999999999999986


Q ss_pred             CC--------------ceeEEeecCCCcEEEEEEEeCCCE-EEEEeCCCcEEEEECC
Q 004214          453 DG--------------SCLKTFEGHTSSVLRASFLTRGAQ-IVSCGADGLVKLWTVR  494 (768)
Q Consensus       453 ~~--------------~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~i~iwd~~  494 (768)
                      .-              +++..-.||...|..+.|+|+..+ +++++.|+.+.||...
T Consensus       348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            42              234555699999999999998875 5778889999999864

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.9e-26  Score=202.13  Aligned_cols=248  Identities=25%  Similarity=0.409  Sum_probs=202.0

Q ss_pred             eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc---eEEEeeecccCcEEEEEEe-cCCCcEEEEEeCCCeEEE
Q 004214          279 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGVGTGHMGAVGAVAFS-KKLQNFLVSGSSDHTIKV  354 (768)
Q Consensus       279 ~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~dg~i~i  354 (768)
                      ..|.+.|..+.  ..--+.. |+|++.|++|+|+..+++   .++..+.+|.+||+.++|. |.-..+|++++.||.|.+
T Consensus         8 t~H~D~IHda~--lDyygkr-lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi   84 (299)
T KOG1332|consen    8 TQHEDMIHDAQ--LDYYGKR-LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII   84 (299)
T ss_pred             hhhhhhhhHhh--hhhhcce-eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence            45777776664  3333555 999999999999998754   5678899999999999995 555669999999999999


Q ss_pred             EeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCC---ceEEEEeccCCCeEEEE
Q 004214          355 WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDL---VSVVTFRGHKRGIWSVE  429 (768)
Q Consensus       355 wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~v~  429 (768)
                      |.-.++        ..........|...|++++|.|.  |-.|++++.||.|.|.+.++.   ........|.-.|++++
T Consensus        85 Wke~~g--------~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs  156 (299)
T KOG1332|consen   85 WKEENG--------RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS  156 (299)
T ss_pred             EecCCC--------chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence            987755        34455566789999999999994  678999999999999998754   22334567999999999


Q ss_pred             EccC---C-----------CEEEEeeCCCcEEEEeCCCC--ceeEEeecCCCcEEEEEEEeCC----CEEEEEeCCCcEE
Q 004214          430 FSPV---D-----------QVVITASGDKTIKIWSISDG--SCLKTFEGHTSSVLRASFLTRG----AQIVSCGADGLVK  489 (768)
Q Consensus       430 ~s~~---~-----------~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~----~~l~s~~~dg~i~  489 (768)
                      |.|.   |           +.|++|+.|..|+||+..++  ..-++|.+|.+.|..++|.|.-    .+|++++.||+|.
T Consensus       157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi  236 (299)
T KOG1332|consen  157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI  236 (299)
T ss_pred             ecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence            9996   4           56999999999999998876  3456689999999999999964    4899999999999


Q ss_pred             EEECCCC--e-EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          490 LWTVRTG--E-CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       490 iwd~~~~--~-~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      ||.....  + ....+......++.+.||+.|+.|+.++.|..|.+|.-+.
T Consensus       237 Iwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  237 IWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             EEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            9987521  1 1223344678899999999999999999999999998654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=4.8e-25  Score=200.54  Aligned_cols=267  Identities=22%  Similarity=0.280  Sum_probs=214.5

Q ss_pred             CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214          239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC  318 (768)
Q Consensus       239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  318 (768)
                      .+.|.++.|+ +..+.|++++.||.+++|+....... ..-.|..++.+.+  |. +... +++|+-||.|+.+|+.++.
T Consensus        13 ~d~IS~v~f~-~~~~~LLvssWDgslrlYdv~~~~l~-~~~~~~~plL~c~--F~-d~~~-~~~G~~dg~vr~~Dln~~~   86 (323)
T KOG1036|consen   13 EDGISSVKFS-PSSSDLLVSSWDGSLRLYDVPANSLK-LKFKHGAPLLDCA--FA-DEST-IVTGGLDGQVRRYDLNTGN   86 (323)
T ss_pred             hhceeeEEEc-CcCCcEEEEeccCcEEEEeccchhhh-hheecCCceeeee--cc-CCce-EEEeccCceEEEEEecCCc
Confidence            4578999999 67778888889999999999887444 3345788888875  44 4444 9999999999999999886


Q ss_pred             EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE
Q 004214          319 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG  398 (768)
Q Consensus       319 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  398 (768)
                      ... +..|..+|.|+.+++. ...+++|++|++|++||.+....           .........|.++..  .|+.|++|
T Consensus        87 ~~~-igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R~~~~-----------~~~~d~~kkVy~~~v--~g~~LvVg  151 (323)
T KOG1036|consen   87 EDQ-IGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPRNKVV-----------VGTFDQGKKVYCMDV--SGNRLVVG  151 (323)
T ss_pred             cee-eccCCCceEEEEeecc-CCeEEEcccCccEEEEecccccc-----------ccccccCceEEEEec--cCCEEEEe
Confidence            554 4569999999999976 44799999999999999884211           111122346666655  47789999


Q ss_pred             eCCCcEEEEeCCCCceEEEEe--ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC----ceeEEeecCC--------
Q 004214          399 SQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG----SCLKTFEGHT--------  464 (768)
Q Consensus       399 ~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~----~~~~~~~~~~--------  464 (768)
                      +.|..+.+||+++.......+  .-.-.+.|+++-|++.-.++++-||.|.+=.++..    +.-..|+.|.        
T Consensus       152 ~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~  231 (323)
T KOG1036|consen  152 TSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEI  231 (323)
T ss_pred             ecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceE
Confidence            999999999999876554332  23457899999999888999999999988666655    3344566664        


Q ss_pred             -CcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC
Q 004214          465 -SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS  526 (768)
Q Consensus       465 -~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~  526 (768)
                       -+|++++|+|-...|+||+.||.|.+||+.+.+.+..+......|.+++|+.+|..||+++.
T Consensus       232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence             38999999999999999999999999999999999999888888999999999999999874

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=1.9e-25  Score=202.33  Aligned_cols=296  Identities=19%  Similarity=0.332  Sum_probs=230.9

Q ss_pred             EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCC------------C------eeEEEecCccceeEEEEEc
Q 004214           22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA------------K------KCVATLDKHFSRVTSMAIT   83 (768)
Q Consensus        22 ~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~------------~------~~~~~l~~h~~~V~~l~fs   83 (768)
                      ....+..|++++.+-+|+|||..  +|+|+.|..|+|.|++.            +      -.+++|-.|...|+++.|.
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~l--vATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH  181 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSL--VATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH  181 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcE--EEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence            35677889999999999999987  99999999999999861            1      2467888899999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeee---eeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCc
Q 004214           84 SDGSTLISAGRDKVVNLWDLRDYSCK---LTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG  160 (768)
Q Consensus        84 ~d~~~L~s~~~dg~i~vWd~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  160 (768)
                      |....|++++.|++|+++|+..-...   +.+..-+++.++.|.|.|.                       +++.+.+-.
T Consensus       182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-----------------------fllvgTdHp  238 (430)
T KOG0640|consen  182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-----------------------FLLVGTDHP  238 (430)
T ss_pred             chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-----------------------eEEEecCCC
Confidence            99999999999999999999765433   3445566788999999886                       777777778


Q ss_pred             EEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCC
Q 004214          161 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE  240 (768)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (768)
                      .+++||+++.+.+..                                                        ...-.+|.+
T Consensus       239 ~~rlYdv~T~Qcfvs--------------------------------------------------------anPd~qht~  262 (430)
T KOG0640|consen  239 TLRLYDVNTYQCFVS--------------------------------------------------------ANPDDQHTG  262 (430)
T ss_pred             ceeEEeccceeEeee--------------------------------------------------------cCccccccc
Confidence            888888877633211                                                        112335778


Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeee-eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE
Q 004214          241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC  319 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  319 (768)
                      .|.++.|++ .+++.++++.||.|++||--+++|+.++ ..|.+.-.|-+  .+..++.++++.+.|..+++|.+.++++
T Consensus       263 ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa--~Ftkn~kyiLsSG~DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  263 AITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA--VFTKNGKYILSSGKDSTVKLWEISTGRM  339 (430)
T ss_pred             ceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE--EEccCCeEEeecCCcceeeeeeecCCce
Confidence            899999985 7889999999999999999999999887 44665544443  4555555699999999999999999999


Q ss_pred             EEeeeccc--C---cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE
Q 004214          320 VGVGTGHM--G---AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL  394 (768)
Q Consensus       320 ~~~~~~~~--~---~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  394 (768)
                      +..+.+-.  +   .-+...|+......|.---..+.+.-||-++..         +......+|++.++.+.-||.+.-
T Consensus       340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtad---------r~~l~slgHn~a~R~i~HSP~~p~  410 (430)
T KOG0640|consen  340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTAD---------RVALLSLGHNGAVRWIVHSPVEPA  410 (430)
T ss_pred             EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchh---------hhhhcccCCCCCceEEEeCCCCCc
Confidence            98877531  1   123345655544233333345778899988643         233344789999999999999999


Q ss_pred             EEEEeCCCcEEEEeCC
Q 004214          395 VCTGSQDRTACVWRLP  410 (768)
Q Consensus       395 l~~~~~dg~i~i~d~~  410 (768)
                      +++++.|..+++|--+
T Consensus       411 FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  411 FMTCSDDFRARFWYRR  426 (430)
T ss_pred             eeeecccceeeeeeec
Confidence            9999999999999643

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.2e-25  Score=215.47  Aligned_cols=252  Identities=20%  Similarity=0.348  Sum_probs=210.1

Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN  341 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  341 (768)
                      ..+.+|.+..........--.+++.|+.  .++.| .+++.|+..|.|++|.+.+|..+..+.+|-..|+++.|+.||. 
T Consensus        61 p~l~vw~i~k~~~~~q~~v~Pg~v~al~--s~n~G-~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs-  136 (476)
T KOG0646|consen   61 PLLHVWEILKKDQVVQYIVLPGPVHALA--SSNLG-YFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGS-  136 (476)
T ss_pred             ccccccccCchhhhhhhcccccceeeee--cCCCc-eEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCc-
Confidence            4666777665554443333456788885  44444 5588888999999999999999999999999999999999977 


Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 004214          342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDLVSVVTFR  419 (768)
Q Consensus       342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~  419 (768)
                      +|++|+.||.|.+|.+...-..... ....+...+..|.-+|+.+.+.+.  ...+++++.|.++++||+..+..+.++.
T Consensus       137 ~iiTgskDg~V~vW~l~~lv~a~~~-~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~  215 (476)
T KOG0646|consen  137 HIITGSKDGAVLVWLLTDLVSADND-HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT  215 (476)
T ss_pred             EEEecCCCccEEEEEEEeecccccC-CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe
Confidence            8999999999999998654222111 155678888999999999998875  4689999999999999999999888876


Q ss_pred             ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC----------------CceeEEeecCCC--cEEEEEEEeCCCEEEE
Q 004214          420 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD----------------GSCLKTFEGHTS--SVLRASFLTRGAQIVS  481 (768)
Q Consensus       420 ~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~----------------~~~~~~~~~~~~--~v~~~~~s~~~~~l~s  481 (768)
                       ....+.+++.+|-++.+++|+.+|.|.+.++..                +..+..+.||.+  .|+|++++-||..|++
T Consensus       216 -fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS  294 (476)
T KOG0646|consen  216 -FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS  294 (476)
T ss_pred             -cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence             678899999999999999999999999988643                234566779988  9999999999999999


Q ss_pred             EeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCC
Q 004214          482 CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTE  519 (768)
Q Consensus       482 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~  519 (768)
                      |+.||.|+|||+.+.++++++....++|+.+.+.|-.+
T Consensus       295 Gd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  295 GDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             eCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence            99999999999999999999987789999999966543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.2e-25  Score=204.25  Aligned_cols=293  Identities=25%  Similarity=0.365  Sum_probs=247.3

Q ss_pred             eeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC
Q 004214          228 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN  307 (768)
Q Consensus       228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg  307 (768)
                      ...+.+.+.||.+.|..++.-. ..+.+.+++.|.+.+||.++++.|+..+.||.+.|.|+.  +.+.+ .++++++.|+
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsik--fh~s~-~L~lTaSGD~  212 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIK--FHNSG-LLLLTASGDE  212 (481)
T ss_pred             eEeehhhhcccccceeeehhhc-CCcceeecccccceeEEeeccccceeeecccccceeeEE--ecccc-ceEEEccCCc
Confidence            3445677889999999998764 445889999999999999999999999999999999996  55544 5699999999


Q ss_pred             eEEEEeC------CC----------------------------------ceEEEeeecccCcEEEEEEecCCCcEEEEEe
Q 004214          308 SVRLWDS------ES----------------------------------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS  347 (768)
Q Consensus       308 ~i~iwd~------~~----------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  347 (768)
                      +-.||..      ..                                  ..++..+.+|.+.|.+..|...|+ .+++++
T Consensus       213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaS  291 (481)
T KOG0300|consen  213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTAS  291 (481)
T ss_pred             chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc-eeeeee
Confidence            9999951      00                                  124556789999999999988766 699999


Q ss_pred             CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceEEEEeccCCCeE
Q 004214          348 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIW  426 (768)
Q Consensus       348 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~  426 (768)
                      +|.+-.+||+..+          .....+.+|....+.++-+|..+++++++.|.+.++||++.. ..+..|+||...|+
T Consensus       292 WDRTAnlwDVEtg----------e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVT  361 (481)
T KOG0300|consen  292 WDRTANLWDVETG----------EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVT  361 (481)
T ss_pred             ccccceeeeeccC----------ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccccccee
Confidence            9999999999844          467778899999999999999999999999999999999854 45778999999999


Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEeCCCC-ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEe---
Q 004214          427 SVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY---  502 (768)
Q Consensus       427 ~v~~s~~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---  502 (768)
                      ++.|..+. .+++|+.|.+|+|||+++. .++.++. ...+++.++.+..+..++.--.+..|++||+... .+..+   
T Consensus       362 S~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~-RlaRlPrt  438 (481)
T KOG0300|consen  362 SVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN-RLARLPRT  438 (481)
T ss_pred             EEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCC-ccccCCcc
Confidence            99999855 5889999999999999875 4677776 6788999999998889999888999999998543 33333   


Q ss_pred             --ccCCCcEEEEEEcCCC--CEEEEEeCCCcEEEEEcCCH
Q 004214          503 --DKHEDKIWALAVGKKT--EMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       503 --~~~~~~v~~l~~s~~~--~~l~s~~~dg~v~vw~~~~~  538 (768)
                        .+|..-|+|++|..+.  .-|+++|-|..+.=|+++++
T Consensus       439 sRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  439 SRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             cccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence              4788889999998653  45889999999999998865

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=7.1e-25  Score=210.17  Aligned_cols=238  Identities=20%  Similarity=0.276  Sum_probs=193.2

Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC-----
Q 004214          241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-----  315 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~-----  315 (768)
                      ++.+++-+ +.+.+++.|+..|.+++|.+.+|..+..+..|-..|+|+.  +..++.. |++|++||.|.+|.+.     
T Consensus        83 ~v~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~--fs~dgs~-iiTgskDg~V~vW~l~~lv~a  158 (476)
T KOG0646|consen   83 PVHALASS-NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLK--FSDDGSH-IITGSKDGAVLVWLLTDLVSA  158 (476)
T ss_pred             ceeeeecC-CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEE--EeCCCcE-EEecCCCccEEEEEEEeeccc
Confidence            44444444 4677888888999999999999999999999999999996  6666655 9999999999999753     


Q ss_pred             ----CceEEEeeecccCcEEEEEEecCC-CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214          316 ----SRCCVGVGTGHMGAVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP  390 (768)
Q Consensus       316 ----~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  390 (768)
                          +-.+...+..|+-+|+.+...+.+ ...+++++.|.++++||+..+           ........+..+.+++++|
T Consensus       159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-----------~LLlti~fp~si~av~lDp  227 (476)
T KOG0646|consen  159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-----------VLLLTITFPSSIKAVALDP  227 (476)
T ss_pred             ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-----------eeeEEEecCCcceeEEEcc
Confidence                356788899999999999998763 347999999999999999865           2233344667899999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCC----------------ceEEEEeccCC--CeEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 004214          391 NDSLVCTGSQDRTACVWRLPDL----------------VSVVTFRGHKR--GIWSVEFSPVDQVVITASGDKTIKIWSIS  452 (768)
Q Consensus       391 ~~~~l~~~~~dg~i~i~d~~~~----------------~~~~~~~~~~~--~v~~v~~s~~~~~l~t~~~d~~i~iwd~~  452 (768)
                      .++.+.+|+.+|.|.+.++...                ..+..+.||..  +|+|++++-||.+|++|+.||.|+|||+.
T Consensus       228 ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  228 AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence            9999999999999999887432                34567778988  99999999999999999999999999999


Q ss_pred             CCceeEEeecCCCcEEEEEEEeCCCEEEEE-eCCCcEEEEEC
Q 004214          453 DGSCLKTFEGHTSSVLRASFLTRGAQIVSC-GADGLVKLWTV  493 (768)
Q Consensus       453 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~  493 (768)
                      +.++++++....++|+.+.+.|-.+-.+.+ +....+-.|++
T Consensus       308 S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l  349 (476)
T KOG0646|consen  308 SKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHL  349 (476)
T ss_pred             hHHHHHHHhhhccccceeEeeccccceecccccCccCCchHh
Confidence            999999998788999999997754433332 22234444443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.94  E-value=1.8e-24  Score=213.93  Aligned_cols=233  Identities=17%  Similarity=0.270  Sum_probs=172.6

Q ss_pred             EeCCCeEEEEeCCCceEEE--eee--cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec
Q 004214          303 GSKDNSVRLWDSESRCCVG--VGT--GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA  378 (768)
Q Consensus       303 ~~~dg~i~iwd~~~~~~~~--~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  378 (768)
                      ++..|.|-||+++..-.+.  .+.  .....|+.+.|.|-....|++++.||.|++|.+..+....   ....+...+..
T Consensus       599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e---~~~tPe~~lt~  675 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE---NEMTPEKILTI  675 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc---ccCCcceeeec
Confidence            4557889999886422111  111  1346799999999878889999999999999998654322   23446667788


Q ss_pred             cCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc-e
Q 004214          379 HGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS-C  456 (768)
Q Consensus       379 ~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~-~  456 (768)
                      |...|+++.|+| -...|+++++|.+|++||+.+++....+.+|.+.|..++|||+|+.+|+.+.||+|++|+.+++. +
T Consensus       676 h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p  755 (1012)
T KOG1445|consen  676 HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP  755 (1012)
T ss_pred             ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence            999999999999 56789999999999999999999999999999999999999999999999999999999988764 4


Q ss_pred             eEEeecCC-CcEEEEEEEeCCCEEEEEeCCC----cEEEEECCCC--eEEEEe--ccCCCcEEEEEEcCCCC-EEEEEeC
Q 004214          457 LKTFEGHT-SSVLRASFLTRGAQIVSCGADG----LVKLWTVRTG--ECIATY--DKHEDKIWALAVGKKTE-MFATGGS  526 (768)
Q Consensus       457 ~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg----~i~iwd~~~~--~~~~~~--~~~~~~v~~l~~s~~~~-~l~s~~~  526 (768)
                      ++.-.+.. ..--.+.|.-+|+++++.+.|.    .|.+||..+-  .++.+.  +.-... .--.+.+|.. .+++|-.
T Consensus       756 v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~-LvP~YD~Ds~~lfltGKG  834 (1012)
T KOG1445|consen  756 VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSP-LVPHYDYDSNVLFLTGKG  834 (1012)
T ss_pred             cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCcc-ccccccCCCceEEEecCC
Confidence            44433322 2335688999999998887764    6888887653  233322  111111 1112344444 5678888


Q ss_pred             CCcEEEEEcCCHH
Q 004214          527 DALVNLWHDSTAA  539 (768)
Q Consensus       527 dg~v~vw~~~~~~  539 (768)
                      |..|.+|++..+.
T Consensus       835 D~~v~~yEv~~es  847 (1012)
T KOG1445|consen  835 DRFVNMYEVIYES  847 (1012)
T ss_pred             CceEEEEEecCCC
Confidence            9999999976543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=5.2e-25  Score=200.37  Aligned_cols=312  Identities=20%  Similarity=0.278  Sum_probs=207.9

Q ss_pred             EEEEECCCCee-----EEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeee-----eeecceeEeeEEecC
Q 004214           56 VRVWDLLAKKC-----VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKL-----TVPTYEMVEAVCAIP  125 (768)
Q Consensus        56 I~iWd~~~~~~-----~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~-----~~~~~~~v~~~~~~~  125 (768)
                      +.-|+....+.     +..|++|...|++++|+.||++|+|++.|+.|++|++++.....     .--.....       
T Consensus        63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhp-------  135 (420)
T KOG2096|consen   63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHP-------  135 (420)
T ss_pred             hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCc-------
Confidence            45566544433     35678999999999999999999999999999999998743211     10111123       


Q ss_pred             CCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCce
Q 004214          126 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL  205 (768)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  205 (768)
                                                                                          +.+.|.|+-..+
T Consensus       136 --------------------------------------------------------------------T~V~FapDc~s~  147 (420)
T KOG2096|consen  136 --------------------------------------------------------------------TRVVFAPDCKSV  147 (420)
T ss_pred             --------------------------------------------------------------------eEEEECCCcceE
Confidence                                                                                333444444433


Q ss_pred             EEEE-ecCeEEEEeeccCcccceeeEEEe-----eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee
Q 004214          206 LCVT-ADQQLLLYTTVEVPEKKMELILSK-----RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA  279 (768)
Q Consensus       206 ~~~~-~dg~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~  279 (768)
                      +... ..+.+++|................     -..-|.-.+.++-.. .+..++++++.+..|.+|++. |+.+..+.
T Consensus       148 vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-Gq~L~~id  225 (420)
T KOG2096|consen  148 VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-GQLLQSID  225 (420)
T ss_pred             EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-Cceeeeec
Confidence            2222 333455554443332221111111     111233334443332 577899999999999999999 77766665


Q ss_pred             CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC---Cc-----eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCe
Q 004214          280 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE---SR-----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT  351 (768)
Q Consensus       280 ~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~  351 (768)
                      .....-+..+  .+|+|+. +++++-.--|++|.+-   .|     ..+..+++|...|..++|+++.. .+++.+.||+
T Consensus       226 tnq~~n~~aa--vSP~GRF-ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~  301 (420)
T KOG2096|consen  226 TNQSSNYDAA--VSPDGRF-IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGK  301 (420)
T ss_pred             ccccccccee--eCCCCcE-EEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCc
Confidence            4433333333  5566654 8888888899999853   22     23456789999999999999955 7999999999


Q ss_pred             EEEEeCCCCCCCCcccccccee-eEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe-ccCCCeEEEE
Q 004214          352 IKVWSFDGLSDDAEQPMNLKAK-AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWSVE  429 (768)
Q Consensus       352 i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~v~  429 (768)
                      +++||.+-.....+.+..++.- ............++++|+|+.||.+. ...+++|..++++....+. .|...|++++
T Consensus       302 wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is  380 (420)
T KOG2096|consen  302 WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSIS  380 (420)
T ss_pred             EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEE
Confidence            9999987543333333222222 22223344455899999999988765 4689999999987766654 4899999999


Q ss_pred             EccCCCEEEEeeCCCcEEEEe
Q 004214          430 FSPVDQVVITASGDKTIKIWS  450 (768)
Q Consensus       430 ~s~~~~~l~t~~~d~~i~iwd  450 (768)
                      |+++|+++++++ |+.++++.
T Consensus       381 ~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  381 YSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             ecCCCcEEeeec-ceeeeeec
Confidence            999999999986 48888876

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.7e-24  Score=196.98  Aligned_cols=270  Identities=21%  Similarity=0.323  Sum_probs=222.2

Q ss_pred             cccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEE
Q 004214          189 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYD  268 (768)
Q Consensus       189 ~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d  268 (768)
                      +...+..+.|+|..+.|++++-||.+++|+....        ..+....+..++++++|.  +...+++|+-||.|+.+|
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--------~l~~~~~~~~plL~c~F~--d~~~~~~G~~dg~vr~~D   81 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--------SLKLKFKHGAPLLDCAFA--DESTIVTGGLDGQVRRYD   81 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch--------hhhhheecCCceeeeecc--CCceEEEeccCceEEEEE
Confidence            3578899999999999999999999999998765        223445678899999997  477999999999999999


Q ss_pred             CCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeC
Q 004214          269 LSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS  348 (768)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  348 (768)
                      +.++... .+..|..++.|+.  .....+. +++|+.|++|++||.+.......+. ....|.++....+   .|++|+.
T Consensus        82 ln~~~~~-~igth~~~i~ci~--~~~~~~~-vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~g~---~LvVg~~  153 (323)
T KOG1036|consen   82 LNTGNED-QIGTHDEGIRCIE--YSYEVGC-VISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVSGN---RLVVGTS  153 (323)
T ss_pred             ecCCcce-eeccCCCceEEEE--eeccCCe-EEEcccCccEEEEeccccccccccc-cCceEEEEeccCC---EEEEeec
Confidence            9988766 6778999999998  5555555 9999999999999999755555544 3347888877654   7999999


Q ss_pred             CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----ceEEEEeccC--
Q 004214          349 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL----VSVVTFRGHK--  422 (768)
Q Consensus       349 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~--  422 (768)
                      |..|.+||++......        ........-.++|+++-|++.-+++++-||.|.+=.++..    +....|+.|.  
T Consensus       154 ~r~v~iyDLRn~~~~~--------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~  225 (323)
T KOG1036|consen  154 DRKVLIYDLRNLDEPF--------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLS  225 (323)
T ss_pred             CceEEEEEcccccchh--------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecc
Confidence            9999999999764322        1111223346899999999888999999999988777655    4445667664  


Q ss_pred             -------CCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeC
Q 004214          423 -------RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA  484 (768)
Q Consensus       423 -------~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  484 (768)
                             .||++++|+|-...|+||+.||.|.+||+.+.+.+..+......|..++|+.+|..||+++.
T Consensus       226 ~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  226 EKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             cCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence                   37999999999999999999999999999999999999888888999999999999999875

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.7e-23  Score=179.86  Aligned_cols=285  Identities=20%  Similarity=0.288  Sum_probs=227.9

Q ss_pred             ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC------ce---------eeeeeeCCccceEEEeeeeecCCCEEEE
Q 004214          237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS------MS---------CSYVLAGHSEIVLCLDTCALSSGKILIV  301 (768)
Q Consensus       237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~------~~---------~~~~~~~~~~~v~~l~~~~~~~~~~~l~  301 (768)
                      .....|..++|.| .+.+.++|++..++++.....      +.         ..+.-..|.+.|+|.+  |++.+. +++
T Consensus        30 ~dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~--ws~~ge-lia  105 (350)
T KOG0641|consen   30 EDSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA--WSPCGE-LIA  105 (350)
T ss_pred             cchhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE--ecCccC-eEE
Confidence            3455788899885 778999999999998864321      11         1122356889999996  666666 499


Q ss_pred             EEeCCCeEEEEeCCCceEE-----EeeecccCcEEEEEEecC---CCcEEEEEe-CCCeEEEEeCCCCCCCCccccccce
Q 004214          302 TGSKDNSVRLWDSESRCCV-----GVGTGHMGAVGAVAFSKK---LQNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKA  372 (768)
Q Consensus       302 ~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~---~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~  372 (768)
                      +|++|.+|++..++...+.     ..+..|.+.|..++|..+   +..+|++++ .|..|.+-|...+          ..
T Consensus       106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g----------~~  175 (350)
T KOG0641|consen  106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG----------QG  175 (350)
T ss_pred             ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC----------Cc
Confidence            9999999999876643332     246779999999999643   334566554 4666666666533          35


Q ss_pred             eeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec--c-----CCCeEEEEEccCCCEEEEeeCCCc
Q 004214          373 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--H-----KRGIWSVEFSPVDQVVITASGDKT  445 (768)
Q Consensus       373 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~-----~~~v~~v~~s~~~~~l~t~~~d~~  445 (768)
                      ...+.+|.+.|.++ ++-+|-++++|+.|.+|++||++-...+.++..  |     ...|.+++..|.|++|++|-.|..
T Consensus       176 ~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss  254 (350)
T KOG0641|consen  176 FHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS  254 (350)
T ss_pred             ceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc
Confidence            66678899998876 456789999999999999999998877776653  2     357999999999999999999999


Q ss_pred             EEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC----eEEEEeccCCCcEEEEEEcCCCCEE
Q 004214          446 IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG----ECIATYDKHEDKIWALAVGKKTEMF  521 (768)
Q Consensus       446 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~l~~s~~~~~l  521 (768)
                      ..+||++.+++++.|..|...|.++.|+|...|+++++.|..|++-|++..    -++.....|.+.+..+.|+|..-.+
T Consensus       255 c~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sf  334 (350)
T KOG0641|consen  255 CMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSF  334 (350)
T ss_pred             eEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCcccee
Confidence            999999999999999999999999999999999999999999999998632    2344445699999999999999999


Q ss_pred             EEEeCCCcEEEEEcC
Q 004214          522 ATGGSDALVNLWHDS  536 (768)
Q Consensus       522 ~s~~~dg~v~vw~~~  536 (768)
                      ++.+.|.++.+|-++
T Consensus       335 isssadkt~tlwa~~  349 (350)
T KOG0641|consen  335 ISSSADKTATLWALN  349 (350)
T ss_pred             eeccCcceEEEeccC
Confidence            999999999999764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=1.9e-24  Score=194.66  Aligned_cols=255  Identities=18%  Similarity=0.266  Sum_probs=200.2

Q ss_pred             cccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214          236 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE  315 (768)
Q Consensus       236 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~  315 (768)
                      .+|.-.|.++.|.|-+..++.+++-|..+++||..+.+....+.- .+.|++-++........++++|..+-.|++-|+.
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~  176 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA  176 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence            356678899999999999999999999999999999887766543 3444444433334445679999999999999999


Q ss_pred             CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCC-----CccccccceeeEeeccCCCeEEEEEcc
Q 004214          316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD-----AEQPMNLKAKAVVAAHGKDINSLAVAP  390 (768)
Q Consensus       316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~s~  390 (768)
                      +|.....+.+|.+.|.++.|+|....+|++|+.||.|++||++.....     ..............+|.+.++.++|+.
T Consensus       177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS  256 (397)
T KOG4283|consen  177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS  256 (397)
T ss_pred             CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence            999999999999999999999998889999999999999999865211     111112222334567999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEEec---cCC----CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC
Q 004214          391 NDSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKR----GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH  463 (768)
Q Consensus       391 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~----~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~  463 (768)
                      ++.++++.+.|..+++|+..+|+....-.+   |..    .+. +. +.+...++---.++.+.++++-+|..++.+.+|
T Consensus       257 d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h  334 (397)
T KOG4283|consen  257 DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH  334 (397)
T ss_pred             cchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecc
Confidence            999999999999999999987753221111   111    111 22 333344444445689999999999999999999


Q ss_pred             CCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214          464 TSSVLRASFLTRGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       464 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  493 (768)
                      -..+.+..+-|+-+...+|+.|+.|..|-+
T Consensus       335 ~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  335 LKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             cceeeEEeecCchhhhhccccCCccccccc
Confidence            999999999999999999999999999976

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=5.4e-23  Score=209.90  Aligned_cols=288  Identities=17%  Similarity=0.162  Sum_probs=203.1

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA   81 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~   81 (768)
                      ++++++.|+.|.+||..+++.+..+.+|.. +.+++|+|+++. ++++++.++.|++||..+++.+..+..+.. +..++
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~-l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~   79 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKL-LYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA   79 (300)
T ss_pred             EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCE-EEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence            578899999999999999999999887654 678999999875 346778899999999999998887776544 56789


Q ss_pred             EcCCCCEEEEE-eCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCc
Q 004214           82 ITSDGSTLISA-GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG  160 (768)
Q Consensus        82 fs~d~~~L~s~-~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  160 (768)
                      |+|+++.++++ +.++.|++||+.+++.+..++....+.                                         
T Consensus        80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-----------------------------------------  118 (300)
T TIGR03866        80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPE-----------------------------------------  118 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcc-----------------------------------------
Confidence            99999987655 568999999998766554443211112                                         


Q ss_pred             EEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCC
Q 004214          161 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE  240 (768)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (768)
                                                                                                      
T Consensus       119 --------------------------------------------------------------------------------  118 (300)
T TIGR03866       119 --------------------------------------------------------------------------------  118 (300)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeEEEEecCCCCEEEEEeCCC-cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE
Q 004214          241 EILDLKFLGEEEQYLAVATNIE-QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC  319 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~~~~~-~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  319 (768)
                         .++|+ +++.+++++..++ .+.+||..++.....+.... .+.++.  +.+++..+++++..++.|++||+.+++.
T Consensus       119 ---~~~~~-~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~--~s~dg~~l~~~~~~~~~v~i~d~~~~~~  191 (300)
T TIGR03866       119 ---GMAVS-PDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ-RPRFAE--FTADGKELWVSSEIGGTVSVIDVATRKV  191 (300)
T ss_pred             ---eEEEC-CCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC-CccEEE--ECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence               22222 2333444444332 34455665555443332221 233444  6677777556666799999999999887


Q ss_pred             EEeeeccc-----C--cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214          320 VGVGTGHM-----G--AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND  392 (768)
Q Consensus       320 ~~~~~~~~-----~--~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  392 (768)
                      +..+..+.     .  ....++|+|+++..+++.+.++.+.+||+....          .... ..+...+.+++|+|+|
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~----------~~~~-~~~~~~~~~~~~~~~g  260 (300)
T TIGR03866       192 IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE----------VLDY-LLVGQRVWQLAFTPDE  260 (300)
T ss_pred             eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc----------EEEE-EEeCCCcceEEECCCC
Confidence            76654321     1  234688999988555666667889999986431          1111 1244578899999999


Q ss_pred             CEEEEE-eCCCcEEEEeCCCCceEEEEeccCCCeEEEEEcc
Q 004214          393 SLVCTG-SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP  432 (768)
Q Consensus       393 ~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~  432 (768)
                      ++|+++ ..+|.|.+||+.+++.+..+... ...+.++++|
T Consensus       261 ~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       261 KYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             CEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            999886 46899999999999999988754 5558888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5.4e-22  Score=205.59  Aligned_cols=482  Identities=16%  Similarity=0.204  Sum_probs=315.0

Q ss_pred             EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCC---CEEEEEeCCCeEE
Q 004214           23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDG---STLISAGRDKVVN   99 (768)
Q Consensus        23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~---~~L~s~~~dg~i~   99 (768)
                      ...+.|-...-..-.||+|+++  ++. ..+..|.||...+|.++..+.+|..+++.+.+.|..   .++++++.||.|+
T Consensus         9 ~~~lgg~n~~~~~avfSnD~k~--l~~-~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~   85 (792)
T KOG1963|consen    9 PALLGGRNGNKSPAVFSNDAKF--LFL-CTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIR   85 (792)
T ss_pred             eeeeccccceecccccccCCcE--EEE-eeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEE
Confidence            3345555555555678999886  333 345679999999999999999999999999998754   4788999999999


Q ss_pred             EEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCc----eeeee
Q 004214          100 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA----CLYEQ  175 (768)
Q Consensus       100 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~----~~~~~  175 (768)
                      +||+..+.+++++...-++..+.+.|.-....                  ...++....-..+........    .....
T Consensus        86 vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s------------------~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~  147 (792)
T KOG1963|consen   86 VWDWSDGELLKTFDNNLPVHALVYKPAQADIS------------------ANVYVSVEDYSILTTFSKKLSKQSSRFVLA  147 (792)
T ss_pred             EecCCCcEEEEEEecCCceeEEEechhHhCcc------------------ceeEeecccceeeeecccccccceeeeEee
Confidence            99999999999998877776666543211100                  000011111111111111000    00000


Q ss_pred             cCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEE
Q 004214          176 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL  255 (768)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  255 (768)
                      ........+  .........+..++.+ .+..+..+..+.+|.......   ..........|.-.+.+.+++ +++.++
T Consensus       148 t~~~~~~d~--~~~~~~~~~I~~~~~g-e~~~i~~~~~~~~~~v~~~~~---~~~~~~~~~~Htf~~t~~~~s-pn~~~~  220 (792)
T KOG1963|consen  148 TFDSAKGDF--LKEHQEPKSIVDNNSG-EFKGIVHMCKIHIYFVPKHTK---HTSSRDITVHHTFNITCVALS-PNERYL  220 (792)
T ss_pred             eccccchhh--hhhhcCCccEEEcCCc-eEEEEEEeeeEEEEEecccce---eeccchhhhhhcccceeEEec-cccceE
Confidence            000000000  0000012333344444 344455566677777665431   111122223344446777776 589999


Q ss_pred             EEEeCCCcEEEEECCC----ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEE
Q 004214          256 AVATNIEQVQVYDLSS----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG  331 (768)
Q Consensus       256 ~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  331 (768)
                      |+|..+|+|.+|.--.    ......+.-|...|.++.  |.++|.. |++|+..|.+.+|.+.+++ ...+..-.++|.
T Consensus       221 Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~--fS~~G~~-LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~  296 (792)
T KOG1963|consen  221 AAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLS--FSSDGAY-LLSGGREGVLVLWQLETGK-KQFLPRLGSPIL  296 (792)
T ss_pred             EEeccCCcEEEEeccccccccccceEEEecccccceeE--EecCCce-EeecccceEEEEEeecCCC-cccccccCCeeE
Confidence            9999999999997443    223456788999999998  8888887 9999999999999999988 555666788999


Q ss_pred             EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccce-eeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214          332 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKA-KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP  410 (768)
Q Consensus       332 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  410 (768)
                      .+.++|++. +.+....|+.|.+.................+ ........+-.+.++++|.-+.++..+..|.|.+||+-
T Consensus       297 ~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~  375 (792)
T KOG1963|consen  297 HIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLY  375 (792)
T ss_pred             EEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecc
Confidence            999999976 6777778999999887544221111000000 00112233456788999977788888999999999998


Q ss_pred             CCceEEEEec-----------cCCCeEEEEEccCCCEEEEeeC--------C--CcEEEEeCCCCce----eEE-eecCC
Q 004214          411 DLVSVVTFRG-----------HKRGIWSVEFSPVDQVVITASG--------D--KTIKIWSISDGSC----LKT-FEGHT  464 (768)
Q Consensus       411 ~~~~~~~~~~-----------~~~~v~~v~~s~~~~~l~t~~~--------d--~~i~iwd~~~~~~----~~~-~~~~~  464 (768)
                      +...+..+..           +..++++++.+..|.+++|.-.        |  -.+++|-......    ... ...|.
T Consensus       376 td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~  455 (792)
T KOG1963|consen  376 TDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHG  455 (792)
T ss_pred             ccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCC
Confidence            7766655442           2235788888888999998642        3  3478887654332    222 23677


Q ss_pred             CcEEEEEEEeC--CCEEEEEeCCCcEEEEECCCC----------eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 004214          465 SSVLRASFLTR--GAQIVSCGADGLVKLWTVRTG----------ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL  532 (768)
Q Consensus       465 ~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~v  532 (768)
                      ..+...+|.+.  ....++++.||.++||-+...          .|...-..|..++++++|+.||. +++.+.|+.|.+
T Consensus       456 ~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Iti  534 (792)
T KOG1963|consen  456 NAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITI  534 (792)
T ss_pred             ceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEE
Confidence            77766666543  337899999999999987322          23333334889999999999995 555667889999


Q ss_pred             EEcCCH
Q 004214          533 WHDSTA  538 (768)
Q Consensus       533 w~~~~~  538 (768)
                      ||..+.
T Consensus       535 wd~~~~  540 (792)
T KOG1963|consen  535 WDYDTK  540 (792)
T ss_pred             ecCCCh
Confidence            999985

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=6.7e-24  Score=191.09  Aligned_cols=295  Identities=22%  Similarity=0.351  Sum_probs=224.2

Q ss_pred             EEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe------------eE---EEecCccceeEEEEEcC-CCCEE
Q 004214           26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK------------CV---ATLDKHFSRVTSMAITS-DGSTL   89 (768)
Q Consensus        26 l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~------------~~---~~l~~h~~~V~~l~fs~-d~~~L   89 (768)
                      .+.|.+.|.++.+.|. ...++++|+.||.|.|||+++..            ++   ..-.+|.-.|.++.|-| |...+
T Consensus        39 ~r~HgGsvNsL~id~t-egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLT-EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             eccCCCccceeeeccc-cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            3469999999999885 23459999999999999997543            11   11246888999999999 55677


Q ss_pred             EEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCC
Q 004214           90 ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS  169 (768)
Q Consensus        90 ~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~  169 (768)
                      .+++-|.+++|||..+.+....+...+.+...+++|-.                                          
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a------------------------------------------  155 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMA------------------------------------------  155 (397)
T ss_pred             ecccccceEEEeecccceeeEEeecCceeehhhcChhh------------------------------------------
Confidence            78889999999999998876666655444443333311                                          


Q ss_pred             ceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec
Q 004214          170 ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG  249 (768)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  249 (768)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (397)
T KOG4283|consen  156 --------------------------------------------------------------------------------  155 (397)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc-eEEEe------
Q 004214          250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGV------  322 (768)
Q Consensus       250 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~------  322 (768)
                      ...-++|+|+.+.+|++.|+.+|.+...+.+|.+.|.++.  +.|.....|++|+.||.|++||++.. .+...      
T Consensus       156 ~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~--Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~  233 (397)
T KOG4283|consen  156 MSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE--WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT  233 (397)
T ss_pred             hcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE--eccCceeEEEecCCCceEEEEEeecccceeEEeecccC
Confidence            1223788899999999999999999999999999999999  77888999999999999999998753 22222      


Q ss_pred             --------eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE
Q 004214          323 --------GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL  394 (768)
Q Consensus       323 --------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  394 (768)
                              -..|.+.|..++|+.++. ++++.+.|..+++|+...+..............  ..| -.+. +. +-+...
T Consensus       234 k~~p~~~~n~ah~gkvngla~tSd~~-~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~--~~~-~~~~-~~-~~~s~v  307 (397)
T KOG4283|consen  234 KRPPILKTNTAHYGKVNGLAWTSDAR-YLASCGTDDRIRVWNMESGRNTLREFGPIIHNQ--TTS-FAVH-IQ-SMDSDV  307 (397)
T ss_pred             ccCccccccccccceeeeeeecccch-hhhhccCccceEEeecccCcccccccccccccc--ccc-ceEE-Ee-ecccce
Confidence                    236788999999999977 789999999999999987754322111000000  000 0111 22 223344


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214          395 VCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI  451 (768)
Q Consensus       395 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~  451 (768)
                      ++.--.++.+.++++-.+..+..+.+|...|.|.++-|+-+...+|..|+.|..|-.
T Consensus       308 fv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  308 FVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             EEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence            444456689999999999999999999999999999999999999999999999986

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.1e-23  Score=191.88  Aligned_cols=290  Identities=17%  Similarity=0.273  Sum_probs=214.7

Q ss_pred             eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceee--eee--eCCccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214          233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS--YVL--AGHSEIVLCLDTCALSSGKILIVTGSKDNS  308 (768)
Q Consensus       233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~--~~~--~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~  308 (768)
                      ..+.+|...|++++|++ +++.|++++.|+.|++|++......  +.+  .-.-+..+.+.  |.++.+.++++.....+
T Consensus        80 ~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~--FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVV--FAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEE--ECCCcceEEEEEccCCE
Confidence            45789999999999985 8899999999999999999864321  111  01112234444  77888887777777889


Q ss_pred             EEEEeCCCce---E---------EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe
Q 004214          309 VRLWDSESRC---C---------VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV  376 (768)
Q Consensus       309 i~iwd~~~~~---~---------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  376 (768)
                      +++|.+...+   .         ......|.-.+..+-.... ..++++++.|..|.+|++.+.           .....
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lkGq-----------~L~~i  224 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLKGQ-----------LLQSI  224 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecCCc-----------eeeee
Confidence            9999764321   1         1112235556666666555 458999999999999999732           22233


Q ss_pred             eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC---C-----CceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEE
Q 004214          377 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP---D-----LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKI  448 (768)
Q Consensus       377 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~---~-----~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~i  448 (768)
                      ......-...++||+|+++++++----|++|.+-   +     -..+..++||...|..++|+|+.+.+++.+.||+++|
T Consensus       225 dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wri  304 (420)
T KOG2096|consen  225 DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRI  304 (420)
T ss_pred             ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEE
Confidence            3333445678899999999999998899999862   2     2456678999999999999999999999999999999


Q ss_pred             EeCCC-------CceeEEee----cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCcEEEEEEcC
Q 004214          449 WSISD-------GSCLKTFE----GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGK  516 (768)
Q Consensus       449 wd~~~-------~~~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~  516 (768)
                      ||++-       .+.+++..    ...+....+.++|+|+.|+.+.. ..+++|..++|+....++ .|...|.+++|++
T Consensus       305 wdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~  383 (420)
T KOG2096|consen  305 WDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSS  383 (420)
T ss_pred             eeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecC
Confidence            99742       22333331    22234458999999998887653 579999999998777664 5899999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCHH
Q 004214          517 KTEMFATGGSDALVNLWHDSTAA  539 (768)
Q Consensus       517 ~~~~l~s~~~dg~v~vw~~~~~~  539 (768)
                      +|++++++| |..+++..-.++.
T Consensus       384 ~g~~~atcG-dr~vrv~~ntpg~  405 (420)
T KOG2096|consen  384 DGKYIATCG-DRYVRVIRNTPGW  405 (420)
T ss_pred             CCcEEeeec-ceeeeeecCCCch
Confidence            999999998 6678888755443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.93  E-value=2.7e-23  Score=205.78  Aligned_cols=176  Identities=19%  Similarity=0.307  Sum_probs=138.9

Q ss_pred             eCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC-------ceEEEE
Q 004214          347 SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-------VSVVTF  418 (768)
Q Consensus       347 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~  418 (768)
                      +..|.|-||+++.....+...+.      .......|+.+.|+| |...||+++.||.|++|.+..+       .+-..+
T Consensus       600 g~gG~iai~el~~PGrLPDgv~p------~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~l  673 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRLPDGVMP------GLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKIL  673 (1012)
T ss_pred             CCCceEEEEEcCCCCCCCccccc------ccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceee
Confidence            44677888887754332221111      122456789999999 8889999999999999998643       456678


Q ss_pred             eccCCCeEEEEEccC-CCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe
Q 004214          419 RGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE  497 (768)
Q Consensus       419 ~~~~~~v~~v~~s~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  497 (768)
                      .+|...|+++.|+|- ...|++++.|-+|++||+.+++....+.+|.+.|..++|||+|+.+++.+.||+|++|+.++++
T Consensus       674 t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  674 TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE  753 (1012)
T ss_pred             ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence            899999999999995 5789999999999999999999999999999999999999999999999999999999998875


Q ss_pred             -EEEEeccCC-CcEEEEEEcCCCCEEEEEeCCC
Q 004214          498 -CIATYDKHE-DKIWALAVGKKTEMFATGGSDA  528 (768)
Q Consensus       498 -~~~~~~~~~-~~v~~l~~s~~~~~l~s~~~dg  528 (768)
                       ++..-.+.. ..-..+.|.-+|+++++.|-|.
T Consensus       754 ~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  754 QPVYEGKGPVGTRGARILWACDGRIVIVVGFDK  786 (1012)
T ss_pred             CccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence             344333222 1223466777999988887664

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=2.7e-24  Score=211.83  Aligned_cols=319  Identities=24%  Similarity=0.335  Sum_probs=229.0

Q ss_pred             EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCE--EEEEeCCCeE
Q 004214           21 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGST--LISAGRDKVV   98 (768)
Q Consensus        21 ~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~--L~s~~~dg~i   98 (768)
                      .|-..++||++.|.||...|.|.+  ||+|+.||+|+||.+.+|+|+.++. ..+.|.|++|+|.+..  ||.+-... +
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~w--lasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~  466 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEW--LASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-V  466 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcce--eeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-e
Confidence            355678999999999999998887  9999999999999999999999887 4557999999997753  44433333 4


Q ss_pred             EEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCC
Q 004214           99 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS  178 (768)
Q Consensus        99 ~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~  178 (768)
                      .+-+..-|..+...+..+                                   .|..+                      
T Consensus       467 ~ivnp~~G~~~e~~~t~e-----------------------------------ll~~~----------------------  489 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGPTKE-----------------------------------LLASA----------------------  489 (733)
T ss_pred             EEeCccccchhhhcchhh-----------------------------------hhhcC----------------------
Confidence            443322111000000000                                   00000                      


Q ss_pred             ceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEE
Q 004214          179 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA  258 (768)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  258 (768)
                                           |..                                                       .
T Consensus       490 ---------------------~~~-------------------------------------------------------~  493 (733)
T KOG0650|consen  490 ---------------------PNE-------------------------------------------------------S  493 (733)
T ss_pred             ---------------------CCc-------------------------------------------------------c
Confidence                                 000                                                       0


Q ss_pred             eCCCcEEEEECCCce----eeeeeeCCccceEEEeeeeecCCCEEEEEEeCC---CeEEEEeCCCceEEEeeecccCcEE
Q 004214          259 TNIEQVQVYDLSSMS----CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD---NSVRLWDSESRCCVGVGTGHMGAVG  331 (768)
Q Consensus       259 ~~~~~i~i~d~~~~~----~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~  331 (768)
                      ..++.+..|.-....    -+...-.|...|..+.  +...|.+ |++...+   ..|.|.++.......-|....+.|.
T Consensus       494 ~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vt--WHrkGDY-latV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq  570 (733)
T KOG0650|consen  494 EPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVT--WHRKGDY-LATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQ  570 (733)
T ss_pred             CCcccceeechhhhhhhccceEEEEecCCccceee--eecCCce-EEEeccCCCcceEEEEecccccccCchhhcCCcee
Confidence            001223333322111    1223445777888887  7777776 6665443   4788899887776666767788899


Q ss_pred             EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004214          332 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD  411 (768)
Q Consensus       332 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~  411 (768)
                      ++.|+|... +|++++. ..|++||+..          ......+......|.+++++|.|.-|+.|+.|+.+..||+.-
T Consensus       571 ~v~FHPs~p-~lfVaTq-~~vRiYdL~k----------qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldl  638 (733)
T KOG0650|consen  571 RVKFHPSKP-YLFVATQ-RSVRIYDLSK----------QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDL  638 (733)
T ss_pred             EEEecCCCc-eEEEEec-cceEEEehhH----------HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEccc
Confidence            999999865 5555554 5799999873          222333344556789999999999999999999999999974


Q ss_pred             C-ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC------C---ceeEEeecCCCc----EEEEEEEeCCC
Q 004214          412 L-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD------G---SCLKTFEGHTSS----VLRASFLTRGA  477 (768)
Q Consensus       412 ~-~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~------~---~~~~~~~~~~~~----v~~~~~s~~~~  477 (768)
                      . ++..++.-|...+++++|++.-.++++|+.||++.||.-.-      .   -+++.+.+|...    |..+.|+|...
T Consensus       639 sskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp  718 (733)
T KOG0650|consen  639 SSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP  718 (733)
T ss_pred             CcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCc
Confidence            4 67778888999999999999999999999999999986321      1   256788898776    99999999999


Q ss_pred             EEEEEeCCCcEEEE
Q 004214          478 QIVSCGADGLVKLW  491 (768)
Q Consensus       478 ~l~s~~~dg~i~iw  491 (768)
                      +|++++.||+|++|
T Consensus       719 WLfsAGAd~tirlf  732 (733)
T KOG0650|consen  719 WLFSAGADGTIRLF  732 (733)
T ss_pred             eEEecCCCceEEee
Confidence            99999999999998

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=7.2e-23  Score=208.99  Aligned_cols=270  Identities=13%  Similarity=0.158  Sum_probs=207.7

Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEE
Q 004214          253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA  332 (768)
Q Consensus       253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  332 (768)
                      ..+++++.++.+.+||+.+++....+..+.. +.++.  +.+++..++++++.++.|++||..+++....+..+.. +..
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~--~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~   77 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGIT--LSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PEL   77 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceE--ECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccE
Confidence            4678888999999999999988888876654 45565  6777777567788899999999999888776665544 467


Q ss_pred             EEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC-cEEEEeCCC
Q 004214          333 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-TACVWRLPD  411 (768)
Q Consensus       333 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~~~  411 (768)
                      ++++|+++.++++++.++.+++||+....          ..... .+...+.+++|+|+|.+++++..++ .+.+||..+
T Consensus        78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~----------~~~~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~  146 (300)
T TIGR03866        78 FALHPNGKILYIANEDDNLVTVIDIETRK----------VLAEI-PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT  146 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCCCe----------EEeEe-eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCC
Confidence            89999987555666778999999997431          11111 1234468899999999999988775 467789988


Q ss_pred             CceEEEEeccCCCeEEEEEccCCCEEEEe-eCCCcEEEEeCCCCceeEEeecCCC-------cEEEEEEEeCCCEEEEE-
Q 004214          412 LVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHTS-------SVLRASFLTRGAQIVSC-  482 (768)
Q Consensus       412 ~~~~~~~~~~~~~v~~v~~s~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~s~-  482 (768)
                      ++....+.. ...+.+++|+|++++|+++ ..++.|++||+.+++++..+..+..       ....++|+|++++++++ 
T Consensus       147 ~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~  225 (300)
T TIGR03866       147 YEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL  225 (300)
T ss_pred             CeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence            877665442 3456789999999988654 4689999999999988777653211       23468899999986554 


Q ss_pred             eCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEEcCCHH
Q 004214          483 GADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG-GSDALVNLWHDSTAA  539 (768)
Q Consensus       483 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~-~~dg~v~vw~~~~~~  539 (768)
                      +.++.+.+||+.+++.+..+. +...+++++|+|+|++|+++ +.+|.|.+||..+++
T Consensus       226 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       226 GPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             CCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence            456789999999998877664 55679999999999999886 468999999998754

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=3.4e-26  Score=230.13  Aligned_cols=252  Identities=25%  Similarity=0.446  Sum_probs=223.8

Q ss_pred             EeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEec
Q 004214          258 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK  337 (768)
Q Consensus       258 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  337 (768)
                      ......+++|+.+      .+..|...+.|+.  ..... ..+++|+.|-.+.+|.......+..+.+|..+|.++.|++
T Consensus        10 ~~~~t~Lr~~~~~------~~~~hsaav~~lk--~~~s~-r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~   80 (825)
T KOG0267|consen   10 TKRATKLRVWDTR------EFVAHSAAVGCLK--IRKSS-RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT   80 (825)
T ss_pred             eeeeeccccccch------hhhhhhhhhceee--eeccc-eeeccCCCceeeccccccCCchhheeeccCCcceeeecCc
Confidence            3334556677765      3445777788875  33333 4599999999999999988877888999999999999999


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 004214          338 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT  417 (768)
Q Consensus       338 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~  417 (768)
                      . ..++++|+.+|+|++||+.          ..+....+.+|...+.++.|+|-+.+.+.|+.|+.+++||.+...+...
T Consensus        81 ~-E~LlaagsasgtiK~wDle----------eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~  149 (825)
T KOG0267|consen   81 S-ERLLAAGSASGTIKVWDLE----------EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT  149 (825)
T ss_pred             c-hhhhcccccCCceeeeehh----------hhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee
Confidence            8 4589999999999999998          3345667889999999999999999999999999999999998889999


Q ss_pred             EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe
Q 004214          418 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE  497 (768)
Q Consensus       418 ~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  497 (768)
                      +.+|...|.++.|+|+|++++.|+.|.+++|||+..|+.+..|.+|.+.+..+.|+|..-.+++|+.|++|++||+++.+
T Consensus       150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe  229 (825)
T KOG0267|consen  150 YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE  229 (825)
T ss_pred             ecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCc
Q 004214          498 CIATYDKHEDKIWALAVGKKTEMFATGGSDAL  529 (768)
Q Consensus       498 ~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~  529 (768)
                      .+.........|.+++|+|++..+++|..+..
T Consensus       230 ~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl  261 (825)
T KOG0267|consen  230 VISSGKPETDGVRSLAFNPDGKIVLSGEQISL  261 (825)
T ss_pred             EeeccCCccCCceeeeecCCceeeecCchhhh
Confidence            99999888899999999999999988876543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=5.9e-25  Score=223.10  Aligned_cols=290  Identities=20%  Similarity=0.252  Sum_probs=226.9

Q ss_pred             eEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC--
Q 004214          194 TAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS--  271 (768)
Q Consensus       194 ~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~--  271 (768)
                      .++...++...+++++. ..+.+|.+........-....+......-.+.+++|..-..+++|+++..|.|.+||+..  
T Consensus        43 nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~  121 (839)
T KOG0269|consen   43 NAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI  121 (839)
T ss_pred             ceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccc
Confidence            34445555555555443 345666655443221111111222223345667888888889999999999999999987  


Q ss_pred             -ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCC
Q 004214          272 -MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH  350 (768)
Q Consensus       272 -~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg  350 (768)
                       ...+..+..|...+.+++  +.+....+|++|+.||+|++||++...-..++.+....|..+.|+|...+.|+++...|
T Consensus       122 rnk~l~~f~EH~Rs~~~ld--fh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG  199 (839)
T KOG0269|consen  122 RNKLLTVFNEHERSANKLD--FHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG  199 (839)
T ss_pred             cchhhhHhhhhccceeeee--eccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence             566668899999999999  77778888999999999999999999888888899999999999998888999999999


Q ss_pred             eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCce--EEEEeccCCCeEEE
Q 004214          351 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS--VVTFRGHKRGIWSV  428 (768)
Q Consensus       351 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~v  428 (768)
                      .+.+||++..         ......+.+|.++|.|+.|+|++.+||+|+.|++|+|||..+.+.  ..++. ...+|.++
T Consensus       200 ~lqlWDlRqp---------~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rV  269 (839)
T KOG0269|consen  200 YLQLWDLRQP---------DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRV  269 (839)
T ss_pred             eEEEeeccCc---------hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeee
Confidence            9999999853         335566788999999999999999999999999999999986543  33333 45689999


Q ss_pred             EEccCCC-EEEEee--CCCcEEEEeCCCC-ceeEEeecCCCcEEEEEEEe-CCCEEEEEeCCCcEEEEECCCC
Q 004214          429 EFSPVDQ-VVITAS--GDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLT-RGAQIVSCGADGLVKLWTVRTG  496 (768)
Q Consensus       429 ~~s~~~~-~l~t~~--~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~  496 (768)
                      .|-|... .|++++  .|..|+|||++.. -+..++..|...++.++|.. |...|.+++.||+|..-.++++
T Consensus       270 kWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  270 KWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             eeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            9999865 455554  4789999998754 57788999999999999965 5567899999998876655544

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=1.8e-24  Score=208.45  Aligned_cols=279  Identities=18%  Similarity=0.282  Sum_probs=228.5

Q ss_pred             CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce---eeeeeeC--CccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214          239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS---CSYVLAG--HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD  313 (768)
Q Consensus       239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---~~~~~~~--~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd  313 (768)
                      .++|.+..-.+...+++.+|+. |.|+|||+....   .+..+..  ....+.+..  .+++++. |++|+.-.++.|||
T Consensus       418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSck--L~pdgrt-LivGGeastlsiWD  493 (705)
T KOG0639|consen  418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCK--LLPDGRT-LIVGGEASTLSIWD  493 (705)
T ss_pred             cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeE--ecCCCce-EEeccccceeeeee
Confidence            4455565555566778888877 999999986532   2222322  234455544  6677776 88899999999999


Q ss_pred             CCCceEE--EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214          314 SESRCCV--GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN  391 (768)
Q Consensus       314 ~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  391 (768)
                      +....+.  ..+........+++.+||.+ +.++++.||.|.+||+.          +......+.+|.+.+.||.++++
T Consensus       494 LAapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLh----------nq~~VrqfqGhtDGascIdis~d  562 (705)
T KOG0639|consen  494 LAAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLH----------NQTLVRQFQGHTDGASCIDISKD  562 (705)
T ss_pred             ccCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcc----------cceeeecccCCCCCceeEEecCC
Confidence            9865433  33333445677899999955 88899999999999998          44577788999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEE
Q 004214          392 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRAS  471 (768)
Q Consensus       392 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~  471 (768)
                      |..|.+|+-|.+|+-||+++++.+.... ....|.++.++|.+.+|++|-.++.+.|-... +.....+.-|...|.++.
T Consensus       563 GtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlK  640 (705)
T KOG0639|consen  563 GTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLK  640 (705)
T ss_pred             CceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEE
Confidence            9999999999999999999988776544 56789999999999999999999999998864 444556667999999999


Q ss_pred             EEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214          472 FLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       472 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~  535 (768)
                      |++.|+++++.+.|..+..|...-|..+...+ ..+.|.++.+|.|.++++||+.|..-.||.+
T Consensus       641 Fa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  641 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            99999999999999999999999999888876 6788999999999999999999998888875

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.5e-23  Score=190.74  Aligned_cols=293  Identities=20%  Similarity=0.303  Sum_probs=211.2

Q ss_pred             EEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 004214           33 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV  112 (768)
Q Consensus        33 V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~  112 (768)
                      -.|+.|++-|.+  ||+|+.||.|.|||+.|...-+.+.+|..+|++++||+||+.|+|++.|..|.+||+..|.+++.+
T Consensus        26 a~~~~Fs~~G~~--lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDY--LAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcce--eeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence            789999999988  999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccc
Q 004214          113 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG  192 (768)
Q Consensus       113 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (768)
                      ....++....+.|......                     +++.-                                   
T Consensus       104 rf~spv~~~q~hp~k~n~~---------------------va~~~-----------------------------------  127 (405)
T KOG1273|consen  104 RFDSPVWGAQWHPRKRNKC---------------------VATIM-----------------------------------  127 (405)
T ss_pred             EccCccceeeeccccCCeE---------------------EEEEe-----------------------------------
Confidence            8888887777777543110                     00000                                   


Q ss_pred             eeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc
Q 004214          193 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM  272 (768)
Q Consensus       193 ~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~  272 (768)
                                        +                            ....-+.|+++. ..++.-..++...       
T Consensus       128 ------------------~----------------------------~sp~vi~~s~~~-h~~Lp~d~d~dln-------  153 (405)
T KOG1273|consen  128 ------------------E----------------------------ESPVVIDFSDPK-HSVLPKDDDGDLN-------  153 (405)
T ss_pred             ------------------c----------------------------CCcEEEEecCCc-eeeccCCCccccc-------
Confidence                              0                            000011111100 0000001111100       


Q ss_pred             eeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeeccc-CcEEEEEEecCCCcEEEEEeCCCe
Q 004214          273 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM-GAVGAVAFSKKLQNFLVSGSSDHT  351 (768)
Q Consensus       273 ~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~  351 (768)
                          ....|.        .+...++. +++|...|.+.++|..+.+++..++-.+ ..|..+.++..|. +|+.-+.|..
T Consensus       154 ----~sas~~--------~fdr~g~y-IitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRv  219 (405)
T KOG1273|consen  154 ----SSASHG--------VFDRRGKY-IITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRV  219 (405)
T ss_pred             ----cccccc--------cccCCCCE-EEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc-EEEEecCCce
Confidence                001111        14455665 9999999999999999999998888666 7899999999866 8999999999


Q ss_pred             EEEEeCCCCCCCCc-cccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceEEEEeccC-CCeEEE
Q 004214          352 IKVWSFDGLSDDAE-QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRTACVWRLPDLVSVVTFRGHK-RGIWSV  428 (768)
Q Consensus       352 i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-~~v~~v  428 (768)
                      |+.|++........ ..........-......-.+++|+.+|.+++.|+. -..++||.-..|..++.+.|.. .....+
T Consensus       220 IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV  299 (405)
T KOG1273|consen  220 IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDV  299 (405)
T ss_pred             EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeec
Confidence            99999874322100 00000000000012234567899999999988874 3579999999999999999877 567889


Q ss_pred             EEccCCCEEEEeeCCCcEEEEeCC
Q 004214          429 EFSPVDQVVITASGDKTIKIWSIS  452 (768)
Q Consensus       429 ~~s~~~~~l~t~~~d~~i~iwd~~  452 (768)
                      .|+|-...+++- ..|.|+||...
T Consensus       300 ~whp~rp~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  300 NWHPVRPIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             ccccceeeeeec-cCCceEEEEee
Confidence            999998888887 56999999864

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.4e-23  Score=215.73  Aligned_cols=276  Identities=16%  Similarity=0.203  Sum_probs=228.5

Q ss_pred             ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc-eeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214          237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE  315 (768)
Q Consensus       237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~  315 (768)
                      .|....+.++|.+ ++.++++++.+|.|++|+.... .....+..+...|.+++  .  ... .|++|+.+++|.+|.+.
T Consensus        11 aht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia--~--~s~-~f~~~s~~~tv~~y~fp   84 (933)
T KOG1274|consen   11 AHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIA--C--YSN-HFLTGSEQNTVLRYKFP   84 (933)
T ss_pred             hccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEe--e--ccc-ceEEeeccceEEEeeCC
Confidence            4566677888875 5569999999999999998766 44555555888888875  2  223 49999999999999999


Q ss_pred             CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE
Q 004214          316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV  395 (768)
Q Consensus       316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  395 (768)
                      ++..-..+...+-++.+++++.+|. +++.|+.|-.|++.++...          .....+.+|..+|.++.|+|++.+|
T Consensus        85 s~~~~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~----------s~~~~lrgh~apVl~l~~~p~~~fL  153 (933)
T KOG1274|consen   85 SGEEDTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDS----------SQEKVLRGHDAPVLQLSYDPKGNFL  153 (933)
T ss_pred             CCCccceeeeeeccceEEEEecCCc-EEEeecCceeEEEEecccc----------chheeecccCCceeeeeEcCCCCEE
Confidence            8887767777788999999999976 7999999999999998743          3566778999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEecc--------CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec--CCC
Q 004214          396 CTGSQDRTACVWRLPDLVSVVTFRGH--------KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG--HTS  465 (768)
Q Consensus       396 ~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--~~~  465 (768)
                      |+.+.||.|++|++.++....++.+-        ...+..++|+|+|..++..+.|+.|++|+..++.....+..  +..
T Consensus       154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss  233 (933)
T KOG1274|consen  154 AVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS  233 (933)
T ss_pred             EEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc
Confidence            99999999999999998877666541        34677899999988888888999999999999998888763  344


Q ss_pred             cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004214          466 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW  533 (768)
Q Consensus       466 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw  533 (768)
                      .+..++|+|+|+|||+++.||.|.|||+++-+.    ......|.+++|.|+++.+-.....|...+|
T Consensus       234 ~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  234 KFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             ceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence            589999999999999999999999999998322    2345789999999998877666666665555

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=9.1e-24  Score=208.11  Aligned_cols=316  Identities=19%  Similarity=0.251  Sum_probs=235.4

Q ss_pred             eEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcc
Q 004214           66 CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKK  145 (768)
Q Consensus        66 ~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (768)
                      +-..+.||.+.|.+|...|.|.+|++|+.||+|+||.+.+|+|+.++...+.|.+++|.|.+...               
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~---------------  456 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLC---------------  456 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCce---------------
Confidence            34567899999999999999999999999999999999999999999888888888887765411               


Q ss_pred             cCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCccc
Q 004214          146 RRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK  225 (768)
Q Consensus       146 ~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~  225 (768)
                                                                                                      
T Consensus       457 --------------------------------------------------------------------------------  456 (733)
T KOG0650|consen  457 --------------------------------------------------------------------------------  456 (733)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEE--
Q 004214          226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG--  303 (768)
Q Consensus       226 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~--  303 (768)
                                                  .||++.. +.+.+.+..-|..+..  +             +... +|+++  
T Consensus       457 ----------------------------vLAvA~~-~~~~ivnp~~G~~~e~--~-------------~t~e-ll~~~~~  491 (733)
T KOG0650|consen  457 ----------------------------VLAVAVG-ECVLIVNPIFGDRLEV--G-------------PTKE-LLASAPN  491 (733)
T ss_pred             ----------------------------eEEEEec-CceEEeCccccchhhh--c-------------chhh-hhhcCCC
Confidence                                        1111111 1111212111100000  0             0000 01111  


Q ss_pred             --eCCCeEEEEeCCCce----EEEeeecccCcEEEEEEecCCCcEEEEEeC---CCeEEEEeCCCCCCCCccccccceee
Q 004214          304 --SKDNSVRLWDSESRC----CVGVGTGHMGAVGAVAFSKKLQNFLVSGSS---DHTIKVWSFDGLSDDAEQPMNLKAKA  374 (768)
Q Consensus       304 --~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~  374 (768)
                        ..++.+..|.-....    -+...-.|...|..+.|+..|. +|++...   ...|.|.++....          ...
T Consensus       492 ~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~~VliHQLSK~~----------sQ~  560 (733)
T KOG0650|consen  492 ESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGNKSVLIHQLSKRK----------SQS  560 (733)
T ss_pred             ccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc-eEEEeccCCCcceEEEEeccccc----------ccC
Confidence              234466677543211    1334456889999999999987 6777654   3568888887432          222


Q ss_pred             EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214          375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG  454 (768)
Q Consensus       375 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~  454 (768)
                      .+....+.|.++.|+|...+|++++. ..|+|||+...+.+..+......|..++++|.|.-|+.|+.|+.+..||+.-+
T Consensus       561 PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldls  639 (733)
T KOG0650|consen  561 PFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS  639 (733)
T ss_pred             chhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence            23344577899999999999998876 67999999988888887777888999999999999999999999999999754


Q ss_pred             -ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC------CC---eEEEEeccCCCc----EEEEEEcCCCCE
Q 004214          455 -SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR------TG---ECIATYDKHEDK----IWALAVGKKTEM  520 (768)
Q Consensus       455 -~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~------~~---~~~~~~~~~~~~----v~~l~~s~~~~~  520 (768)
                       ++.+++..|...+++++|++.-.++++|+.||++.||.-.      .+   -++..+.+|...    |....|+|...+
T Consensus       640 skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpW  719 (733)
T KOG0650|consen  640 SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW  719 (733)
T ss_pred             cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCce
Confidence             6788899999999999999999999999999999998532      11   256677888765    889999999999


Q ss_pred             EEEEeCCCcEEEE
Q 004214          521 FATGGSDALVNLW  533 (768)
Q Consensus       521 l~s~~~dg~v~vw  533 (768)
                      |+++|.||+|++|
T Consensus       720 LfsAGAd~tirlf  732 (733)
T KOG0650|consen  720 LFSAGADGTIRLF  732 (733)
T ss_pred             EEecCCCceEEee
Confidence            9999999999998

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.5e-24  Score=220.15  Aligned_cols=231  Identities=21%  Similarity=0.323  Sum_probs=194.1

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeCCC---ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccc
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDSES---RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM  368 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  368 (768)
                      +..-...+|++++..|.|.+||+..   .+.+..+..|...+.++.|++..+++|++|++||+|++||++..        
T Consensus        95 W~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~--------  166 (839)
T KOG0269|consen   95 WGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK--------  166 (839)
T ss_pred             cccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc--------
Confidence            4444556799999999999999987   66677889999999999999999999999999999999999843        


Q ss_pred             ccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC-ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcE
Q 004214          369 NLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI  446 (768)
Q Consensus       369 ~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i  446 (768)
                        +...++.+....|+.+.|+| .+..++++...|.+.+||++.. ++...+..|.++|.|+.|+|++.+||||+.|+.|
T Consensus       167 --~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v  244 (839)
T KOG0269|consen  167 --KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMV  244 (839)
T ss_pred             --cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccE
Confidence              34445556778899999999 6889999999999999999865 5566788999999999999999999999999999


Q ss_pred             EEEeCCCCc--eeEEeecCCCcEEEEEEEeCCCE-EEEEeC--CCcEEEEECCCC-eEEEEeccCCCcEEEEEEcC-CCC
Q 004214          447 KIWSISDGS--CLKTFEGHTSSVLRASFLTRGAQ-IVSCGA--DGLVKLWTVRTG-ECIATYDKHEDKIWALAVGK-KTE  519 (768)
Q Consensus       447 ~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~--dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~-~~~  519 (768)
                      +|||..+++  .+.++. ...+|.+++|-|...+ |++++.  |-.|+|||++.. -+-.++..|...++.++|.. |..
T Consensus       245 kiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~  323 (839)
T KOG0269|consen  245 KIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRI  323 (839)
T ss_pred             EEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCce
Confidence            999997654  334443 4578999999998765 565554  678999999764 57788889999999999975 566


Q ss_pred             EEEEEeCCCcEEEE
Q 004214          520 MFATGGSDALVNLW  533 (768)
Q Consensus       520 ~l~s~~~dg~v~vw  533 (768)
                      .+.+++.||.|..-
T Consensus       324 ~l~s~sKD~tv~qh  337 (839)
T KOG0269|consen  324 NLWSCSKDGTVLQH  337 (839)
T ss_pred             eeEeecCccHHHHh
Confidence            78899999987543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=4.5e-24  Score=205.64  Aligned_cols=282  Identities=21%  Similarity=0.351  Sum_probs=224.8

Q ss_pred             cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCC---CeeEEEecC--ccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214           28 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA---KKCVATLDK--HFSRVTSMAITSDGSTLISAGRDKVVNLWD  102 (768)
Q Consensus        28 gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~---~~~~~~l~~--h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd  102 (768)
                      .|...|.++++|...+.  +.||+. |.|+|||+..   ..++..|..  ...-|.++.+.|||+.|++||.-.++.|||
T Consensus       417 ~HGEvVcAvtIS~~trh--VyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD  493 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRH--VYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD  493 (705)
T ss_pred             ccCcEEEEEEecCCcce--eEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence            49999999999988777  999886 5599999953   344555543  345788999999999999999988999999


Q ss_pred             CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214          103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI  182 (768)
Q Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~  182 (768)
                      +..-.....                                                                       
T Consensus       494 LAapTprik-----------------------------------------------------------------------  502 (705)
T KOG0639|consen  494 LAAPTPRIK-----------------------------------------------------------------------  502 (705)
T ss_pred             ccCCCcchh-----------------------------------------------------------------------
Confidence            864221000                                                                       


Q ss_pred             cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214          183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE  262 (768)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~  262 (768)
                                                                                                      
T Consensus       503 --------------------------------------------------------------------------------  502 (705)
T KOG0639|consen  503 --------------------------------------------------------------------------------  502 (705)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcE
Q 004214          263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF  342 (768)
Q Consensus       263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  342 (768)
                                   ..+.......++++  .+++.+ +.+++..||.|.|||+.+...++.+.+|+..+.|+.++++|. .
T Consensus       503 -------------aeltssapaCyALa--~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGt-k  565 (705)
T KOG0639|consen  503 -------------AELTSSAPACYALA--ISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT-K  565 (705)
T ss_pred             -------------hhcCCcchhhhhhh--cCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCc-e
Confidence                         00011111222332  445544 488888999999999999999999999999999999999987 5


Q ss_pred             EEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC
Q 004214          343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK  422 (768)
Q Consensus       343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  422 (768)
                      |-+|+-|++|+.||++.+....           .....+.|.++..+|++.++++|-.++.+.+...... ....+.-|.
T Consensus       566 lWTGGlDntvRcWDlregrqlq-----------qhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlhe  633 (705)
T KOG0639|consen  566 LWTGGLDNTVRCWDLREGRQLQ-----------QHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHE  633 (705)
T ss_pred             eecCCCccceeehhhhhhhhhh-----------hhhhhhhheecccCCCccceeeecccCcEEEEecCCc-cceeecccc
Confidence            9999999999999998653211           1223567999999999999999999999998876543 344566799


Q ss_pred             CCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214          423 RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       423 ~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  493 (768)
                      ..|.++.|.+.|+++++.+.|+.+..|...-|..+...+ ...+|+++.+|.|.+|+++|+.|..-.||.+
T Consensus       634 ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  634 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            999999999999999999999999999999898887776 6788999999999999999999988888864

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=1.1e-23  Score=209.40  Aligned_cols=289  Identities=22%  Similarity=0.299  Sum_probs=222.7

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCcee------eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe-
Q 004214          250 EEEQYLAVATNIEQVQVYDLSSMSC------SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV-  322 (768)
Q Consensus       250 ~~~~~l~~~~~~~~i~i~d~~~~~~------~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-  322 (768)
                      .....|+++..+|.|.++|......      ......|.+.|..+.  +.+ +..+|++++.|.++++||+.+..+... 
T Consensus        62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~--wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~  138 (720)
T KOG0321|consen   62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLK--WAP-GESLLVSASGDSTIRPWDVKTSRLVGGR  138 (720)
T ss_pred             CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeec--cCC-CceeEEEccCCceeeeeeeccceeecce
Confidence            4567899999999999999876543      355678999999997  555 777799999999999999999998877 


Q ss_pred             -eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC-----------------ccccccceeeEeeccCCCeE
Q 004214          323 -GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA-----------------EQPMNLKAKAVVAAHGKDIN  384 (768)
Q Consensus       323 -~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~i~  384 (768)
                       +.+|.+.|.++||.|..+..|++|+.||.|.|||++......                 ......+......++...|.
T Consensus       139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~  218 (720)
T KOG0321|consen  139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF  218 (720)
T ss_pred             eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence             889999999999999999999999999999999987542100                 00001112223345556666


Q ss_pred             E---EEEccCCCEEEEEeC-CCcEEEEeCCCCceEEE--------Eecc---CCCeEEEEEccCCCEEEEeeCCCcEEEE
Q 004214          385 S---LAVAPNDSLVCTGSQ-DRTACVWRLPDLVSVVT--------FRGH---KRGIWSVEFSPVDQVVITASGDKTIKIW  449 (768)
Q Consensus       385 ~---~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~--------~~~~---~~~v~~v~~s~~~~~l~t~~~d~~i~iw  449 (768)
                      +   +.+..|...||+++. |+.|+|||++.......        +..|   ...++++.....|.+|++.+.|++|+.|
T Consensus       219 ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~y  298 (720)
T KOG0321|consen  219 SSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFY  298 (720)
T ss_pred             eeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEE
Confidence            5   666678888998887 99999999987543222        2223   3467888888889999999999999999


Q ss_pred             eCCCC--ceeEEeecCCCc--EEEEEEEeCCCEEEEEeCCCcEEEEECCCCe-EEEEeccCCCcEEEEEEcCC-CCEEEE
Q 004214          450 SISDG--SCLKTFEGHTSS--VLRASFLTRGAQIVSCGADGLVKLWTVRTGE-CIATYDKHEDKIWALAVGKK-TEMFAT  523 (768)
Q Consensus       450 d~~~~--~~~~~~~~~~~~--v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~s~~-~~~l~s  523 (768)
                      |+.+.  .++..+.++...  -..-..+|++.+|++|+.|+..++|.+.+.+ ....+.+|.-.|++++|.|. -.-++|
T Consensus       299 nm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~T  378 (720)
T KOG0321|consen  299 NMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVAT  378 (720)
T ss_pred             eccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCcee
Confidence            98764  345555554332  2233568999999999999999999998865 45566789999999999884 335778


Q ss_pred             EeCCCcEEEEEcCCHHHH
Q 004214          524 GGSDALVNLWHDSTAAER  541 (768)
Q Consensus       524 ~~~dg~v~vw~~~~~~~~  541 (768)
                      ++.|..+++|++..+-..
T Consensus       379 cSdD~~~kiW~l~~~l~e  396 (720)
T KOG0321|consen  379 CSDDFRVKIWRLSNGLEE  396 (720)
T ss_pred             eccCcceEEEeccCchhh
Confidence            899999999999765443

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=4.3e-24  Score=187.41  Aligned_cols=251  Identities=23%  Similarity=0.332  Sum_probs=196.7

Q ss_pred             EEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC---eeEEEecCccceeEEEEEcC--CCCEEEEEeCCCeEEE
Q 004214           26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK---KCVATLDKHFSRVTSMAITS--DGSTLISAGRDKVVNL  100 (768)
Q Consensus        26 l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~---~~~~~l~~h~~~V~~l~fs~--d~~~L~s~~~dg~i~v  100 (768)
                      -.+|...|......--|++  |||++.|++|+|+.+.+.   +++.+|.||.++|+.++|..  -|..||+++.||.|.|
T Consensus         7 dt~H~D~IHda~lDyygkr--lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi   84 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKR--LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII   84 (299)
T ss_pred             hhhhhhhhhHhhhhhhcce--eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence            3569999998888877888  999999999999999754   56889999999999999975  7999999999999999


Q ss_pred             EECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCce
Q 004214          101 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV  180 (768)
Q Consensus       101 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~  180 (768)
                      |.-++++-                                                                        
T Consensus        85 Wke~~g~w------------------------------------------------------------------------   92 (299)
T KOG1332|consen   85 WKEENGRW------------------------------------------------------------------------   92 (299)
T ss_pred             EecCCCch------------------------------------------------------------------------
Confidence            98765420                                                                        


Q ss_pred             eecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC
Q 004214          181 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN  260 (768)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  260 (768)
                                                                                                      
T Consensus        93 --------------------------------------------------------------------------------   92 (299)
T KOG1332|consen   93 --------------------------------------------------------------------------------   92 (299)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc---eEEEeeecccCcEEEEEEec
Q 004214          261 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGVGTGHMGAVGAVAFSK  337 (768)
Q Consensus       261 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~  337 (768)
                                  ........|...|+++++.+.. .+.+|++++.||.|.+.+.++.   ........|.-.|++++|.|
T Consensus        93 ------------~k~~e~~~h~~SVNsV~waphe-ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap  159 (299)
T KOG1332|consen   93 ------------TKAYEHAAHSASVNSVAWAPHE-YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP  159 (299)
T ss_pred             ------------hhhhhhhhhcccceeecccccc-cceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecC
Confidence                        0011233455666666533322 3445899999999999987654   23345568999999999998


Q ss_pred             C---C----------CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC----CEEEEEeC
Q 004214          338 K---L----------QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND----SLVCTGSQ  400 (768)
Q Consensus       338 ~---~----------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~  400 (768)
                      .   |          ...|++|+.|..|++|+....        .......+.+|.+-|+.++|.|.-    ..||+++.
T Consensus       160 a~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--------~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq  231 (299)
T KOG1332|consen  160 ASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--------SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ  231 (299)
T ss_pred             cCCCccccccCcccccceeeccCCccceeeeecCCc--------chhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence            6   3          135999999999999998864        334455578999999999999953    57999999


Q ss_pred             CCcEEEEeCCCCc---eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214          401 DRTACVWRLPDLV---SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI  451 (768)
Q Consensus       401 dg~i~i~d~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~  451 (768)
                      ||++.||..+...   ....+......++.+.||+.|++|++++.|+.|.+|--
T Consensus       232 Dg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  232 DGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             CCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence            9999999876321   12234446678999999999999999999999999974

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=5.3e-23  Score=186.79  Aligned_cols=253  Identities=19%  Similarity=0.394  Sum_probs=200.0

Q ss_pred             eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC----ceEEEeeecccCcEEEEEEe-cCCCcEEEEEeCCCeEE
Q 004214          279 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----RCCVGVGTGHMGAVGAVAFS-KKLQNFLVSGSSDHTIK  353 (768)
Q Consensus       279 ~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~dg~i~  353 (768)
                      .+|.+-|.|+.  +...|+. +++++.|++|.|||..+    ..+....+.|.+.|..+.|. |.-...+++++.|+++.
T Consensus        10 s~h~DlihdVs--~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen   10 SGHKDLIHDVS--FDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             cCCcceeeeee--ecccCce-eeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence            56888899998  7777777 99999999999999643    35667788999999999995 55556899999999999


Q ss_pred             EEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCc------eEEEEe------
Q 004214          354 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP--NDSLVCTGSQDRTACVWRLPDLV------SVVTFR------  419 (768)
Q Consensus       354 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~------  419 (768)
                      +|.-..... ...........++......|+.+.|.|  -|-.+|+++.||.++||+..+..      ....+.      
T Consensus        87 iWEE~~~~~-~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen   87 IWEEQEKSE-EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP  165 (361)
T ss_pred             eeeeccccc-ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence            997542111 111124445666677788999999999  57899999999999999876432      222222      


Q ss_pred             -ccCCCeEEEEEccC---CCEEEEeeCC-----CcEEEEeCCCC----ceeEEeecCCCcEEEEEEEeCC----CEEEEE
Q 004214          420 -GHKRGIWSVEFSPV---DQVVITASGD-----KTIKIWSISDG----SCLKTFEGHTSSVLRASFLTRG----AQIVSC  482 (768)
Q Consensus       420 -~~~~~v~~v~~s~~---~~~l~t~~~d-----~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~~----~~l~s~  482 (768)
                       .+..+..|+.|+|.   ..+||+|+.+     +.++||....+    ..+.++.+|..+|++++|.|+-    ..|+++
T Consensus       166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA  245 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA  245 (361)
T ss_pred             ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence             35677889999985   4688888776     47999986543    3556778999999999999962    478999


Q ss_pred             eCCCcEEEEECCC--------------------CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          483 GADGLVKLWTVRT--------------------GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       483 ~~dg~i~iwd~~~--------------------~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      +.|| |+||.+..                    -+.+..+..|.+.||.+.|.-.|..|++.|.||+|++|..+
T Consensus       246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            9999 99999873                    13456678999999999999999999999999999999754

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.5e-23  Score=214.52  Aligned_cols=243  Identities=20%  Similarity=0.306  Sum_probs=206.7

Q ss_pred             eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc-eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeC
Q 004214          279 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF  357 (768)
Q Consensus       279 ~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  357 (768)
                      ..|+...+.++  +.+++.. |++++.||.|++|+..+. .....+..+...|.+++....   .|++|+.+++|..|.+
T Consensus        10 yaht~G~t~i~--~d~~gef-i~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   10 YAHTGGLTLIC--YDPDGEF-ICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKF   83 (933)
T ss_pred             hhccCceEEEE--EcCCCCE-EEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeC
Confidence            45777777775  7777875 999999999999987665 333333347777888877654   7999999999999999


Q ss_pred             CCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEE
Q 004214          358 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV  437 (768)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  437 (768)
                      ..+.          ....+....-++++++|+.+|+++|.|+.|-.|++.++.+......+++|..+|.++.|+|.+++|
T Consensus        84 ps~~----------~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fL  153 (933)
T KOG1274|consen   84 PSGE----------EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFL  153 (933)
T ss_pred             CCCC----------ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEE
Confidence            8653          222334456789999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCcEEEEeCCCCceeEEeecC--------CCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc--CCC
Q 004214          438 ITASGDKTIKIWSISDGSCLKTFEGH--------TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK--HED  507 (768)
Q Consensus       438 ~t~~~d~~i~iwd~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~  507 (768)
                      |+.+.||.|+|||+.++.+..++.+-        ...+..++|+|+|..|+..+.|+.|++|+..+++....+..  +..
T Consensus       154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss  233 (933)
T KOG1274|consen  154 AVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS  233 (933)
T ss_pred             EEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc
Confidence            99999999999999999887776531        34678899999988999999999999999999998887753  455


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          508 KIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       508 ~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      .+..+.|+|+|.|||+++.||.|.|||..+
T Consensus       234 ~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  234 KFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             ceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            589999999999999999999999999987

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.92  E-value=6.6e-23  Score=196.05  Aligned_cols=306  Identities=17%  Similarity=0.255  Sum_probs=224.3

Q ss_pred             EECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC----eeEEEecCccceeEEEEEcCC-CCEE
Q 004214           15 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK----KCVATLDKHFSRVTSMAITSD-GSTL   89 (768)
Q Consensus        15 wd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~----~~~~~l~~h~~~V~~l~fs~d-~~~L   89 (768)
                      .|+.+-......+-|.++|++++|+|.....++|+|..-|.|-+||+.+.    ..+..+..|.++|.+|.|+|. -..+
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i  250 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI  250 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence            34444455566778999999999999988789999999999999999532    346778899999999999994 4678


Q ss_pred             EEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCC
Q 004214           90 ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS  169 (768)
Q Consensus        90 ~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~  169 (768)
                      ++.+.||+|+.=|++.+.....+.                                                        
T Consensus       251 ~ssSyDGtiR~~D~~~~i~e~v~s--------------------------------------------------------  274 (498)
T KOG4328|consen  251 YSSSYDGTIRLQDFEGNISEEVLS--------------------------------------------------------  274 (498)
T ss_pred             eeeccCceeeeeeecchhhHHHhh--------------------------------------------------------
Confidence            899999999998886542100000                                                        


Q ss_pred             ceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec
Q 004214          170 ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG  249 (768)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  249 (768)
                                                                                                     .
T Consensus       275 -------------------------------------------------------------------------------~  275 (498)
T KOG4328|consen  275 -------------------------------------------------------------------------------L  275 (498)
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           0


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE-EEeeecccC
Q 004214          250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTGHMG  328 (768)
Q Consensus       250 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~  328 (768)
                      .+.                             ...+..++  +...... ++.|..=|...+||.+++.. ...+..|..
T Consensus       276 ~~d-----------------------------~~~fs~~d--~~~e~~~-vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k  323 (498)
T KOG4328|consen  276 DTD-----------------------------NIWFSSLD--FSAESRS-VLFGDNVGNFNVIDLRTDGSEYENLRLHKK  323 (498)
T ss_pred             Ccc-----------------------------ceeeeecc--ccCCCcc-EEEeecccceEEEEeecCCccchhhhhhhc
Confidence            000                             00011111  3334444 55566666888898886543 556677888


Q ss_pred             cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 004214          329 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR  408 (768)
Q Consensus       329 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d  408 (768)
                      .|.+++++|..+.++++++.|++.+|||++.......      +......|...|.+..|||.+-.|++.+.|..|+|||
T Consensus       324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD  397 (498)
T ss_pred             ccceeecCCCCchheeecccCcceeeeehhhhcCCCC------cceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence            9999999999999999999999999999997643221      2445567999999999999887799999999999999


Q ss_pred             CC----CCceEEEEeccCC------CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC-cEEE-EEEEeCC
Q 004214          409 LP----DLVSVVTFRGHKR------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS-SVLR-ASFLTRG  476 (768)
Q Consensus       409 ~~----~~~~~~~~~~~~~------~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~-~~~s~~~  476 (768)
                      ..    ...+...+. |..      ...-..|.|+..++++|-.-..|-|+|-..++.+..+..... .|.+ ..|+|-+
T Consensus       398 ss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~  476 (498)
T KOG4328|consen  398 SSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMR  476 (498)
T ss_pred             cccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccc
Confidence            83    334444444 322      233467999999999999999999999988888888754433 4444 4789988


Q ss_pred             CEEEEE-eCCCcEEEEECC
Q 004214          477 AQIVSC-GADGLVKLWTVR  494 (768)
Q Consensus       477 ~~l~s~-~~dg~i~iwd~~  494 (768)
                      ..+++| +..|.|+||.-+
T Consensus       477 ~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  477 DTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             cceeccCCccceEEEEecC
Confidence            855555 457889988644

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.1e-22  Score=194.66  Aligned_cols=285  Identities=12%  Similarity=0.130  Sum_probs=231.1

Q ss_pred             ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc--eeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC
Q 004214          237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM--SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS  314 (768)
Q Consensus       237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~  314 (768)
                      ...+.|+++.|+| ..+.+++|+.|+.+++|.+...  ..+..+.-...+|.+..  +.+.|...+++++....++.||+
T Consensus       211 ps~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~--f~p~G~~~i~~s~rrky~ysyDl  287 (514)
T KOG2055|consen  211 PSHGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAE--FAPNGHSVIFTSGRRKYLYSYDL  287 (514)
T ss_pred             cCcCCceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceee--ecCCCceEEEecccceEEEEeec
Confidence            3467899999985 7889999999999999987643  45556666677888876  88888866999999999999999


Q ss_pred             CCceEEEe--eeccc-CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214          315 ESRCCVGV--GTGHM-GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN  391 (768)
Q Consensus       315 ~~~~~~~~--~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  391 (768)
                      .+.+....  ..++. ..+....++|+++ +++..+..|.|.+....++.           ........+.|..++|+.+
T Consensus       288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~e-----------li~s~KieG~v~~~~fsSd  355 (514)
T KOG2055|consen  288 ETAKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKE-----------LITSFKIEGVVSDFTFSSD  355 (514)
T ss_pred             cccccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhh-----------hhheeeeccEEeeEEEecC
Confidence            98765443  23333 3567788899966 89999999999998766432           1111224567899999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEEeccCC-CeEEEEEccCCCEEEEeeCCCcEEEEeCCC------CceeEEeecCC
Q 004214          392 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR-GIWSVEFSPVDQVVITASGDKTIKIWSISD------GSCLKTFEGHT  464 (768)
Q Consensus       392 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~------~~~~~~~~~~~  464 (768)
                      ++.|++.+.+|.|.+||++...++..+....+ .-++++.++++.+||+|+..|.|.|||..+      .+++.++..-.
T Consensus       356 sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt  435 (514)
T KOG2055|consen  356 SKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT  435 (514)
T ss_pred             CcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh
Confidence            99999999999999999999988888774332 347888899999999999999999999653      46788888888


Q ss_pred             CcEEEEEEEeCCCEEEEEeC--CCcEEEEECCCCeEEEEeccC---CCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          465 SSVLRASFLTRGAQIVSCGA--DGLVKLWTVRTGECIATYDKH---EDKIWALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       465 ~~v~~~~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~---~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      ..|++++|+++++.|+.++.  ...+++-.+.+......+...   -+.|+||+|||.+.+||.|..+|.+.+|++.
T Consensus       436 t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  436 TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            89999999999999987776  568999988887776666543   3568999999999999999999999999874

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=4.4e-25  Score=222.19  Aligned_cols=223  Identities=29%  Similarity=0.517  Sum_probs=200.4

Q ss_pred             EEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeecc
Q 004214          300 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH  379 (768)
Q Consensus       300 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  379 (768)
                      ++.+..+-.+++||.+.      +..|...+.++..-.. ...+++|+.|..+-+|.+...          .....+.+|
T Consensus         7 ~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s-~r~~~~Gg~~~k~~L~~i~kp----------~~i~S~~~h   69 (825)
T KOG0267|consen    7 LMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKS-SRSLVTGGEDEKVNLWAIGKP----------NAITSLTGH   69 (825)
T ss_pred             cceeeeeeccccccchh------hhhhhhhhceeeeecc-ceeeccCCCceeeccccccCC----------chhheeecc
Confidence            44455556677887654      3568888888887444 458999999999999998743          233347899


Q ss_pred             CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEE
Q 004214          380 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT  459 (768)
Q Consensus       380 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~  459 (768)
                      ..+|.++.|++...+|++|+.+|+|++||+...+.++++.+|...+.++.|+|.+.+.+.|+.|+.+++||++...|.+.
T Consensus        70 espIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~  149 (825)
T KOG0267|consen   70 ESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT  149 (825)
T ss_pred             CCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHH
Q 004214          460 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA  539 (768)
Q Consensus       460 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~  539 (768)
                      +.+|...|..+.|+|+|+++++|++|..++|||...|+.+..|..|.+.+.++.|+|..-.+++||.|+++++|++++-+
T Consensus       150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe  229 (825)
T KOG0267|consen  150 YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE  229 (825)
T ss_pred             ecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998643

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.7e-22  Score=183.87  Aligned_cols=285  Identities=17%  Similarity=0.224  Sum_probs=222.3

Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE
Q 004214          242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG  321 (768)
Q Consensus       242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  321 (768)
                      ..++.|+ +.+.+||+|..+|.|.|||+.+...-+.+.+|..+|.+++  ++++|+. |++++.|..|.+||+..|.++.
T Consensus        26 a~~~~Fs-~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~--WS~dgr~-LltsS~D~si~lwDl~~gs~l~  101 (405)
T KOG1273|consen   26 AECCQFS-RWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLC--WSRDGRK-LLTSSRDWSIKLWDLLKGSPLK  101 (405)
T ss_pred             cceEEec-cCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEE--ecCCCCE-eeeecCCceeEEEeccCCCcee
Confidence            5677777 5889999999999999999999999999999999999997  7777776 9999999999999999999888


Q ss_pred             eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC
Q 004214          322 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD  401 (768)
Q Consensus       322 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  401 (768)
                      .+. ..++|+.+.|+|...+..++.--+..-.+-++.......      .+.......+....+..|.+.|+++++|...
T Consensus       102 rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~------Lp~d~d~dln~sas~~~fdr~g~yIitGtsK  174 (405)
T KOG1273|consen  102 RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV------LPKDDDGDLNSSASHGVFDRRGKYIITGTSK  174 (405)
T ss_pred             EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee------ccCCCccccccccccccccCCCCEEEEecCc
Confidence            776 568999999999877666655444444455544211000      0000000011112234688999999999999


Q ss_pred             CcEEEEeCCCCceEEEEeccC-CCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC-------c--eeEEeec--CCCcEEE
Q 004214          402 RTACVWRLPDLVSVVTFRGHK-RGIWSVEFSPVDQVVITASGDKTIKIWSISDG-------S--CLKTFEG--HTSSVLR  469 (768)
Q Consensus       402 g~i~i~d~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~-------~--~~~~~~~--~~~~v~~  469 (768)
                      |.+.++|..+.+++..++-.. ..|..+.|+..|++|+.-+.|+.||.|+++.-       +  +.+++..  ....=.+
T Consensus       175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~  254 (405)
T KOG1273|consen  175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK  254 (405)
T ss_pred             ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence            999999999999999888766 78999999999999999999999999998631       1  1122211  1223356


Q ss_pred             EEEEeCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          470 ASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYDKHE-DKIWALAVGKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       470 ~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      ++|+.+|.|++.++. -..++||.-..|.+++.+.+.. .....+.|+|-...+++. ..|.+++|.....
T Consensus       255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV  324 (405)
T ss_pred             eeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence            899999999988775 3479999999999999998877 457789999999888887 7889999987654

>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=99.91  E-value=2.9e-24  Score=181.41  Aligned_cols=136  Identities=38%  Similarity=0.803  Sum_probs=127.9

Q ss_pred             hhHHHHhhcccchHHHHHHHhhcCCchhHHHHHHHHH---hchhh--HHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCch
Q 004214          555 GQELENAVLDADYTKAIQVAFELRRPHKLFELFASVC---RKREA--ELQIEKALHALGKEEIRQLLEYVREWNTKPKLC  629 (768)
Q Consensus       555 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~~  629 (768)
                      +|++.+++..++|.+|+.+|+++++|.+++.++..++   .+...  ...++.++..|+.+++..||+|+++||||+|++
T Consensus         1 eQ~L~N~l~~~~y~~Al~LAl~L~~P~~ll~i~~~~~~~~~~~~~~g~~~l~~~i~~L~~~~l~~LL~~ir~WNTNsr~~   80 (141)
T PF08625_consen    1 EQELSNLLRQKDYKEALRLALKLDHPFRLLKILKDLLETEEDEDSIGSEELDEVIKKLDDEQLEKLLRFIRDWNTNSRTS   80 (141)
T ss_pred             CchHHHHHHhhhHHHHHHHHHhcCCcHHHHHHHHHHHhcccccccchHHHHHHHHHhcCHHHHHHHHHHHHHhhcccccH
Confidence            3688999999999999999999999999999999998   32222  467999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCcchhhcccChHhHHHhhccchHhHHHHHHHhHhhhhhhheeccccc
Q 004214          630 HVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMS  690 (768)
Q Consensus       630 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~  690 (768)
                      .++|.+|++||+.|+++.+...|++.+++++|.+|++||++|+++|.+.+++|||++.+|+
T Consensus        81 ~vAQ~vL~~il~~~~~~~L~~~~~~~~~le~lipYteRH~~Rl~~L~q~syllDy~l~~M~  141 (141)
T PF08625_consen   81 HVAQRVLNAILKSHPPEELLKIPGLKEILEALIPYTERHFQRLDRLLQKSYLLDYTLQQMD  141 (141)
T ss_pred             HHHHHHHHHHHHhCCHHHHHccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999985

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=1.1e-22  Score=194.63  Aligned_cols=291  Identities=21%  Similarity=0.267  Sum_probs=226.2

Q ss_pred             eeecccCCceeEEEEecCCC-CEEEEEeCCCcEEEEECCCc----eeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC
Q 004214          233 KRLVGYNEEILDLKFLGEEE-QYLAVATNIEQVQVYDLSSM----SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN  307 (768)
Q Consensus       233 ~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg  307 (768)
                      ....-+...|.+++|+|... +++|+|...|+|-+||+.+.    .-+..+..|..+|.++.  |+|.+...+++.+.||
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~--F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLK--FSPANTSQIYSSSYDG  257 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceE--ecCCChhheeeeccCc
Confidence            34456778999999999777 89999999999999999532    23556788999999998  7787777799999999


Q ss_pred             eEEEEeCCCceEEEeeec--ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214          308 SVRLWDSESRCCVGVGTG--HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS  385 (768)
Q Consensus       308 ~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  385 (768)
                      +|++-|++.+..-..+..  ....+..+.|+.+... ++.+..=|...+||.+....         ......-|...|++
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~-vl~~~~~G~f~~iD~R~~~s---------~~~~~~lh~kKI~s  327 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRS-VLFGDNVGNFNVIDLRTDGS---------EYENLRLHKKKITS  327 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccCCCcc-EEEeecccceEEEEeecCCc---------cchhhhhhhcccce
Confidence            999999987654443333  4455677888877664 56666666999999986532         23334557789999


Q ss_pred             EEEcc-CCCEEEEEeCCCcEEEEeCCCCc----eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC----CCce
Q 004214          386 LAVAP-NDSLVCTGSQDRTACVWRLPDLV----SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS----DGSC  456 (768)
Q Consensus       386 ~~~s~-~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~----~~~~  456 (768)
                      ++++| ...+|++++.|++++|||++...    ++.....|...|.+..|||.+-.|+|.+.|..|+|||..    ...+
T Consensus       328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p  407 (498)
T KOG4328|consen  328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP  407 (498)
T ss_pred             eecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCc
Confidence            99999 56789999999999999997642    234455699999999999998889999999999999983    3344


Q ss_pred             eEEeecCCC------cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC-cEEEE-EEcCCCCEEEEE-eCC
Q 004214          457 LKTFEGHTS------SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED-KIWAL-AVGKKTEMFATG-GSD  527 (768)
Q Consensus       457 ~~~~~~~~~------~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l-~~s~~~~~l~s~-~~d  527 (768)
                      ..++. |..      ......|.|+..++++|-.-..|-|+|-..++.+..+..... .|.++ .|+|-+..+++| +..
T Consensus       408 ~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~  486 (498)
T KOG4328|consen  408 LGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSS  486 (498)
T ss_pred             cceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCcc
Confidence            44444 332      344578999999999999988999999999998888754444 56665 899988855554 567


Q ss_pred             CcEEEEEcC
Q 004214          528 ALVNLWHDS  536 (768)
Q Consensus       528 g~v~vw~~~  536 (768)
                      |.|+||--+
T Consensus       487 Gki~vft~k  495 (498)
T KOG4328|consen  487 GKIYVFTNK  495 (498)
T ss_pred             ceEEEEecC
Confidence            889988644

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.91  E-value=1.8e-19  Score=194.67  Aligned_cols=372  Identities=32%  Similarity=0.584  Sum_probs=289.9

Q ss_pred             EEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe-eEEEecCccc-eeEEEEE-cCCCC-EEEEEeC-CCeEE
Q 004214           25 YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK-CVATLDKHFS-RVTSMAI-TSDGS-TLISAGR-DKVVN   99 (768)
Q Consensus        25 ~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~-~~~~l~~h~~-~V~~l~f-s~d~~-~L~s~~~-dg~i~   99 (768)
                      .+.+|...|.++.|.+.+..  ++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ ++++. +++..+. |+.+.
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGEL--LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             eeeeccceEEEEEECCCCcE--EEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence            46689999999999998877  8888899999999998887 7777776443 6777777 78887 5555444 88888


Q ss_pred             EEECCC-CeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCC
Q 004214          100 LWDLRD-YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS  178 (768)
Q Consensus       100 vWd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~  178 (768)
                      +|+... ....                                                                     
T Consensus       138 ~~~~~~~~~~~---------------------------------------------------------------------  148 (466)
T COG2319         138 LWDLSTPGKLI---------------------------------------------------------------------  148 (466)
T ss_pred             EEEecCCCeEE---------------------------------------------------------------------
Confidence            998765 2111                                                                     


Q ss_pred             ceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEE
Q 004214          179 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA  258 (768)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  258 (768)
                                                                            ....+|...+..+.|.+.. ..++.+
T Consensus       149 ------------------------------------------------------~~~~~~~~~v~~~~~~~~~-~~~~~~  173 (466)
T COG2319         149 ------------------------------------------------------RTLEGHSESVTSLAFSPDG-KLLASG  173 (466)
T ss_pred             ------------------------------------------------------EEEecCcccEEEEEECCCC-CEEEec
Confidence                                                                  2223344556667776544 366666


Q ss_pred             eC-CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE-eeecccCcEEEEEEe
Q 004214          259 TN-IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG-VGTGHMGAVGAVAFS  336 (768)
Q Consensus       259 ~~-~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~  336 (768)
                      +. ++.+++|+...+.....+.+|...+.+++  +.+.+..++++++.|+.|++||...+.... .+.+|.... ...|+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~  250 (466)
T COG2319         174 SSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA--FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFS  250 (466)
T ss_pred             CCCCCceEEEEcCCCceEEeeccCCCceEEEE--EcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeEC
Confidence            64 89999999999888889999999999998  556666446666999999999999888887 688888876 44899


Q ss_pred             cCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEE
Q 004214          337 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV  416 (768)
Q Consensus       337 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~  416 (768)
                      |++ .++++++.|+.+++|++.....         .......|...+.++.|+|++..+++++.|+.+.+|+..+.....
T Consensus       251 ~~~-~~~~~~~~d~~~~~~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  320 (466)
T COG2319         251 PDG-SLLASGSSDGTIRLWDLRSSSS---------LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS  320 (466)
T ss_pred             CCC-CEEEEecCCCcEEEeeecCCCc---------EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence            997 5788999999999999985432         122226778999999999988888889999999999998887777


Q ss_pred             EEe--ccCCCeEEEEEccCCCEEEEe-eCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEE-EeCCCcEEEEE
Q 004214          417 TFR--GHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVS-CGADGLVKLWT  492 (768)
Q Consensus       417 ~~~--~~~~~v~~v~~s~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~dg~i~iwd  492 (768)
                      ...  .|...+..+.|.+++..++.+ ..|+.+.+|++............. .+..+.+.+ ...... +..++.+.+|+
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~  398 (466)
T COG2319         321 SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWD  398 (466)
T ss_pred             EeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEe
Confidence            666  788889999994332455555 688999999998877333333222 288889988 544444 68899999999


Q ss_pred             CCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          493 VRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       493 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      ............+...+....+++++..+++++.++.+.+|+..+
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         399 LSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             cccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            999988887775547899999999999999999999999999887

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.90  E-value=6.1e-19  Score=176.19  Aligned_cols=403  Identities=16%  Similarity=0.226  Sum_probs=273.1

Q ss_pred             cEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 004214           32 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT  111 (768)
Q Consensus        32 ~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~  111 (768)
                      .|..++|-|||...++|.|   ..+.+||...|..+.++++|...|.+++|+.||+.++||+.|..|.+|.-. .+.+..
T Consensus        14 ci~d~afkPDGsqL~lAAg---~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG---SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILK   89 (1081)
T ss_pred             chheeEECCCCceEEEecC---CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceee
Confidence            8899999999998555443   469999999999999999999999999999999999999999999999754 344556


Q ss_pred             eecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCccc
Q 004214          112 VPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKR  191 (768)
Q Consensus       112 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  191 (768)
                      ..+...+.++.|.|-...++                       + +.-...-+|..+...+...+.            ..
T Consensus        90 YSH~D~IQCMsFNP~~h~La-----------------------s-CsLsdFglWS~~qK~V~K~ks------------s~  133 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPITHQLA-----------------------S-CSLSDFGLWSPEQKSVSKHKS------------SS  133 (1081)
T ss_pred             eccCCeeeEeecCchHHHhh-----------------------h-cchhhccccChhhhhHHhhhh------------he
Confidence            67778899999998765332                       2 222245567665553332222            24


Q ss_pred             ceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCC----CEEEEEeCCCcEEEE
Q 004214          192 GFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE----QYLAVATNIEQVQVY  267 (768)
Q Consensus       192 ~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~l~~~~~~~~i~i~  267 (768)
                      .+.++++..++..++.+..+|+|.+-+....+     .....+..|.+++|.+++|+|..+    ..+++...+.++.+|
T Consensus       134 R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe-----k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy  208 (1081)
T KOG1538|consen  134 RIICCSWTNDGQYLALGMFNGTISIRNKNGEE-----KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFY  208 (1081)
T ss_pred             eEEEeeecCCCcEEEEeccCceEEeecCCCCc-----ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEE
Confidence            56778899999999999999999988655442     233455678899999999987543    578888888888888


Q ss_pred             ECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEe
Q 004214          268 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS  347 (768)
Q Consensus       268 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  347 (768)
                      .+.....- .-..-.-...|+.  ++++|.. +..|+.|+.+.+|- +.|-.+.+.......|+.++..|+++ .++.|+
T Consensus       209 ~LsG~~Ig-k~r~L~FdP~Cis--Yf~NGEy-~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ-~v~~GC  282 (1081)
T KOG1538|consen  209 QLSGKQIG-KDRALNFDPCCIS--YFTNGEY-ILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQ-YVVVGC  282 (1081)
T ss_pred             Eecceeec-ccccCCCCchhhe--eccCCcE-EEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCc-eEEEEE
Confidence            77543322 1122223345776  7788887 88899999999985 45666677666788999999999977 789999


Q ss_pred             CCCeEEEEeCCCCCCCC----------------------ccc--------------------cccc--------------
Q 004214          348 SDHTIKVWSFDGLSDDA----------------------EQP--------------------MNLK--------------  371 (768)
Q Consensus       348 ~dg~i~iwd~~~~~~~~----------------------~~~--------------------~~~~--------------  371 (768)
                      .||+|-.|++-....-.                      ...                    ....              
T Consensus       283 qDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~~~  362 (1081)
T KOG1538|consen  283 QDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSEDLS  362 (1081)
T ss_pred             ccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccccc
Confidence            99999999864210000                      000                    0000              


Q ss_pred             -----------------ee-----eEeeccCCCeEEEEEc---------------------c-CCCEEEEEeCCCcEEEE
Q 004214          372 -----------------AK-----AVVAAHGKDINSLAVA---------------------P-NDSLVCTGSQDRTACVW  407 (768)
Q Consensus       372 -----------------~~-----~~~~~~~~~i~~~~~s---------------------~-~~~~l~~~~~dg~i~i~  407 (768)
                                       ..     ...........|+.|.                     | ...-+++|..||.|.-.
T Consensus       363 ~mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~GGP~gREgL~vGlknGqV~ki  442 (1081)
T KOG1538|consen  363 DMHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIGGPPGREGLLVGLKNGQVLKI  442 (1081)
T ss_pred             cchhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhcCCCCcceeEEEecCCcEEEE
Confidence                             00     0000111222233332                     1 11234455555544332


Q ss_pred             eCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCc
Q 004214          408 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL  487 (768)
Q Consensus       408 d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  487 (768)
                      -+++.-++. +......|.|+.++.+...||+....++..++|+.+++.+..-    ..+.+++|+....-+++-+..|.
T Consensus       443 F~dN~~PiL-l~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QE----pg~nSV~wNT~~E~MlcfT~~g~  517 (1081)
T KOG1538|consen  443 FVDNLFPIL-LLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQE----PGANSVAWNTQCEDMLCFTGGGY  517 (1081)
T ss_pred             EecCCchhh-eecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceEeec----CCCceEEeeccccceEEEecCCc
Confidence            233322222 2224567999999999999999999999999999999877654    34677888765443433333355


Q ss_pred             EEE
Q 004214          488 VKL  490 (768)
Q Consensus       488 i~i  490 (768)
                      +.|
T Consensus       518 L~V  520 (1081)
T KOG1538|consen  518 LNV  520 (1081)
T ss_pred             eEE
Confidence            444

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=4.2e-22  Score=190.71  Aligned_cols=287  Identities=16%  Similarity=0.204  Sum_probs=227.0

Q ss_pred             CcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004214          188 DSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY  267 (768)
Q Consensus       188 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~  267 (768)
                      ....+++++.|+|....+++++.|+.+++|.+.....+.     ...+.-...+|.+++|.+.+...+++++....++.|
T Consensus       211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~-----lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysy  285 (514)
T KOG2055|consen  211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK-----LQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSY  285 (514)
T ss_pred             cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChh-----heeeeeccCccceeeecCCCceEEEecccceEEEEe
Confidence            345789999999999999999999999999998775442     233344466889999998776699999999999999


Q ss_pred             ECCCceeeee--eeCCcc-ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEE
Q 004214          268 DLSSMSCSYV--LAGHSE-IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV  344 (768)
Q Consensus       268 d~~~~~~~~~--~~~~~~-~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  344 (768)
                      |+.+.+....  +.++.. .+....  .++++. +|+..+..|.|.+....+++.+..++ -.+.|..++|+.+++ .|+
T Consensus       286 Dle~ak~~k~~~~~g~e~~~~e~Fe--VShd~~-fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk-~l~  360 (514)
T KOG2055|consen  286 DLETAKVTKLKPPYGVEEKSMERFE--VSHDSN-FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSK-ELL  360 (514)
T ss_pred             eccccccccccCCCCcccchhheeE--ecCCCC-eEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCc-EEE
Confidence            9998876543  344432 222222  345555 59999999999999999999988877 568899999999976 677


Q ss_pred             EEeCCCeEEEEeCCCCCCCCccccccceeeEee-ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC------CceEEE
Q 004214          345 SGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD------LVSVVT  417 (768)
Q Consensus       345 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~------~~~~~~  417 (768)
                      +++.+|.|.+||++..          .....+. ...-.-++++.++++.+||+|+..|.|.|||..+      .+++..
T Consensus       361 ~~~~~GeV~v~nl~~~----------~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~  430 (514)
T KOG2055|consen  361 ASGGTGEVYVWNLRQN----------SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKT  430 (514)
T ss_pred             EEcCCceEEEEecCCc----------ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhh
Confidence            7888899999999853          2222222 2223447788899999999999999999999653      466777


Q ss_pred             EeccCCCeEEEEEccCCCEEEEeeC--CCcEEEEeCCCCceeEEeecC---CCcEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214          418 FRGHKRGIWSVEFSPVDQVVITASG--DKTIKIWSISDGSCLKTFEGH---TSSVLRASFLTRGAQIVSCGADGLVKLWT  492 (768)
Q Consensus       418 ~~~~~~~v~~v~~s~~~~~l~t~~~--d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  492 (768)
                      +..-...|+++.|+|+.++||.+|.  +..+|+-.+.+......|...   -+.|+|++|+|.|.+|+.|..+|.|.+|.
T Consensus       431 ~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k  510 (514)
T KOG2055|consen  431 VDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK  510 (514)
T ss_pred             hhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence            7667789999999999999998875  667999998877766666533   35689999999999999999999999998


Q ss_pred             CC
Q 004214          493 VR  494 (768)
Q Consensus       493 ~~  494 (768)
                      +.
T Consensus       511 L~  512 (514)
T KOG2055|consen  511 LH  512 (514)
T ss_pred             ec
Confidence            74

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3.5e-20  Score=192.28  Aligned_cols=495  Identities=15%  Similarity=0.171  Sum_probs=315.1

Q ss_pred             ecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCc-cEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcC
Q 004214            6 EGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK-SLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS   84 (768)
Q Consensus         6 g~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~-~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~   84 (768)
                      +..+..|.||...+|.|++.|.+|..+++.+.+.|.... .++.+++.||.|++||...+.++.++..+.. +..+.+.|
T Consensus        33 ~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~-v~~~~~~~  111 (792)
T KOG1963|consen   33 LCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP-VHALVYKP  111 (792)
T ss_pred             EeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc-eeEEEech
Confidence            345789999999999999999999999999999886553 5688999999999999999999999875433 44444432


Q ss_pred             ---CCCEEEEEe-CCCeE-EEEECCCCeeeeeee-------------cceeEeeEEecCCCCCccccccccchhhhhccc
Q 004214           85 ---DGSTLISAG-RDKVV-NLWDLRDYSCKLTVP-------------TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR  146 (768)
Q Consensus        85 ---d~~~L~s~~-~dg~i-~vWd~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (768)
                         +....+..+ .|..+ .-...........+.             .......+...+.                    
T Consensus       112 ~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~--------------------  171 (792)
T KOG1963|consen  112 AQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS--------------------  171 (792)
T ss_pred             hHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC--------------------
Confidence               111222222 11111 101111111000000             0000111122221                    


Q ss_pred             CCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccc
Q 004214          147 RSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK  226 (768)
Q Consensus       147 ~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~  226 (768)
                          ..+.....+..+.+|....+.-. ...     ......+...+++..++|.+..++++..||+|.+|.-.....  
T Consensus       172 ----ge~~~i~~~~~~~~~~v~~~~~~-~~~-----~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~--  239 (792)
T KOG1963|consen  172 ----GEFKGIVHMCKIHIYFVPKHTKH-TSS-----RDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD--  239 (792)
T ss_pred             ----ceEEEEEEeeeEEEEEeccccee-ecc-----chhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc--
Confidence                23444445556777777665310 000     001112223368899999999999999999999998765322  


Q ss_pred             eeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC
Q 004214          227 MELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD  306 (768)
Q Consensus       227 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d  306 (768)
                       .......+.=|..+|.+++|++ ++.+|++|+..+.+.+|.+.+++ .+.++.-.++|..+.  +++++.. .+....|
T Consensus       240 -~~~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~--vS~ds~~-~sl~~~D  313 (792)
T KOG1963|consen  240 -DSETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIV--VSPDSDL-YSLVLED  313 (792)
T ss_pred             -ccccceEEEecccccceeEEec-CCceEeecccceEEEEEeecCCC-cccccccCCeeEEEE--EcCCCCe-EEEEecC
Confidence             1223344556788999999995 88899999999999999999998 556777788888886  6666665 7777789


Q ss_pred             CeEEEEeCCCceEEEeeec-----------ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE
Q 004214          307 NSVRLWDSESRCCVGVGTG-----------HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV  375 (768)
Q Consensus       307 g~i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  375 (768)
                      +.|.+....+......+.+           ..+-.+.++++|. .+.++-.+..|.|.+||+-.................
T Consensus       314 NqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr-~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~  392 (792)
T KOG1963|consen  314 NQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR-TNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSD  392 (792)
T ss_pred             ceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC-CCceeecCCCceEEEEeccccceeeeEEEEeecccC
Confidence            9999998766554444332           2344677888885 335788889999999998754322111000000000


Q ss_pred             ee-ccCCCeEEEEEccCCCEEEEEeC--------CC--cEEEEeCCCCceEE-----EEeccCCCeEEEEEccC--CCEE
Q 004214          376 VA-AHGKDINSLAVAPNDSLVCTGSQ--------DR--TACVWRLPDLVSVV-----TFRGHKRGIWSVEFSPV--DQVV  437 (768)
Q Consensus       376 ~~-~~~~~i~~~~~s~~~~~l~~~~~--------dg--~i~i~d~~~~~~~~-----~~~~~~~~v~~v~~s~~--~~~l  437 (768)
                      -. .+...+++++.+..|.+++++-.        ||  .+++|-......-.     ....|...+...++.+.  ...+
T Consensus       393 ~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~  472 (792)
T KOG1963|consen  393 GDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRC  472 (792)
T ss_pred             CcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCccccee
Confidence            00 23345788888888999988642        33  57888765443222     22357777666666543  3379


Q ss_pred             EEeeCCCcEEEEeCCCC----------ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCC
Q 004214          438 ITASGDKTIKIWSISDG----------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT-GECIATYDKHE  506 (768)
Q Consensus       438 ~t~~~d~~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~  506 (768)
                      ++++.||.++||-+.+.          .|...-.-|..+++.++|+.||..|+ .+.|++|.+||..+ .+.........
T Consensus       473 vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~~~~~  551 (792)
T KOG1963|consen  473 VTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTEGSRN  551 (792)
T ss_pred             EEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhccccccc
Confidence            99999999999998432          23322224788999999999995554 56678999999988 44444443333


Q ss_pred             CcEEEEEEcCCC--CEEEEEeCCCcEEEEEcCCHHHH
Q 004214          507 DKIWALAVGKKT--EMFATGGSDALVNLWHDSTAAER  541 (768)
Q Consensus       507 ~~v~~l~~s~~~--~~l~s~~~dg~v~vw~~~~~~~~  541 (768)
                      .++..+.+....  ...+.....+.+.+|++.+....
T Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~  588 (792)
T KOG1963|consen  552 WPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLI  588 (792)
T ss_pred             cchHhHhhhcccccccceeeccCceEehHhhhhhhee
Confidence            344444333211  12233445677899998766543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=3.3e-21  Score=175.24  Aligned_cols=267  Identities=15%  Similarity=0.305  Sum_probs=200.1

Q ss_pred             EcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCC----CeeEEEecCccceeEEEEEcC--CCCEEEEEeCCCeEEE
Q 004214           27 KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA----KKCVATLDKHFSRVTSMAITS--DGSTLISAGRDKVVNL  100 (768)
Q Consensus        27 ~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~----~~~~~~l~~h~~~V~~l~fs~--d~~~L~s~~~dg~i~v  100 (768)
                      .+|.+-|.++.|.+.|++  +|+|+.|++|+|||..+    -.+....+.|.+.|..+.|.+  -|+.+|+++.|+++.|
T Consensus        10 s~h~DlihdVs~D~~GRR--mAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRR--MATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             cCCcceeeeeeecccCce--eeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            479999999999999999  99999999999999643    356677889999999999965  5899999999999999


Q ss_pred             EECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCce
Q 004214          101 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV  180 (768)
Q Consensus       101 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~  180 (768)
                      |.-....    ...           .                                                      
T Consensus        88 WEE~~~~----~~~-----------~------------------------------------------------------   98 (361)
T KOG2445|consen   88 WEEQEKS----EEA-----------H------------------------------------------------------   98 (361)
T ss_pred             eeecccc----ccc-----------c------------------------------------------------------
Confidence            9643110    000           0                                                      


Q ss_pred             eecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCC-CCEEEEEe
Q 004214          181 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE-EQYLAVAT  259 (768)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~  259 (768)
                                                                   .........+....+.|+++.|.|.. +-.||+++
T Consensus        99 ---------------------------------------------~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~  133 (361)
T KOG2445|consen   99 ---------------------------------------------GRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS  133 (361)
T ss_pred             ---------------------------------------------cceeEEEEEeecCCcceeEEEecchhcceEEEEec
Confidence                                                         00111223344556688899997743 55788899


Q ss_pred             CCCcEEEEECCCcee------eeee-------eCCccceEEEeeeeecCCCEEEEEEeCC-----CeEEEEeCCCc----
Q 004214          260 NIEQVQVYDLSSMSC------SYVL-------AGHSEIVLCLDTCALSSGKILIVTGSKD-----NSVRLWDSESR----  317 (768)
Q Consensus       260 ~~~~i~i~d~~~~~~------~~~~-------~~~~~~v~~l~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~----  317 (768)
                      .||.++||+....-.      ...+       ..+..+..|+.|+...-...+|+.|+.+     +.+.||....+    
T Consensus       134 aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw  213 (361)
T KOG2445|consen  134 ADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKW  213 (361)
T ss_pred             cCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCccee
Confidence            999999998754322      2222       2467788899877655566778888766     57888876543    


Q ss_pred             eEEEeeecccCcEEEEEEecCCC---cEEEEEeCCCeEEEEeCCCCC----------CCCccccccceeeEeeccCCCeE
Q 004214          318 CCVGVGTGHMGAVGAVAFSKKLQ---NFLVSGSSDHTIKVWSFDGLS----------DDAEQPMNLKAKAVVAAHGKDIN  384 (768)
Q Consensus       318 ~~~~~~~~~~~~v~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~  384 (768)
                      ..+..+.+|+.+|+.++|.|+-.   .++++++.|| |+||.+....          ..............+..|.+.|.
T Consensus       214 ~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VW  292 (361)
T KOG2445|consen  214 LKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVW  292 (361)
T ss_pred             eeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceE
Confidence            23456779999999999999743   4799999999 9999998421          11122234445566778999999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214          385 SLAVAPNDSLVCTGSQDRTACVWRLP  410 (768)
Q Consensus       385 ~~~~s~~~~~l~~~~~dg~i~i~d~~  410 (768)
                      .+.|+-.|..|++.+.||.|++|...
T Consensus       293 rv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  293 RVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EEEEeeeeeEEeecCCCceeeehhhh
Confidence            99999999999999999999999753

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.89  E-value=1.1e-21  Score=189.18  Aligned_cols=211  Identities=16%  Similarity=0.227  Sum_probs=182.4

Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecc-cCcEE
Q 004214          253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVG  331 (768)
Q Consensus       253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~  331 (768)
                      .+++.|+..+.|.|||+....+.+.+.+|...|+++.  +...+.+ |++++..|.|.|..+.++.....+... ...|.
T Consensus        92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~--YN~~Dey-iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR  168 (673)
T KOG4378|consen   92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVD--YNNTDEY-IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR  168 (673)
T ss_pred             eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEE--ecCCcce-eEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence            5788888899999999998888999999999999997  6666665 999999999999999998877777655 44566


Q ss_pred             EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCC
Q 004214          332 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLP  410 (768)
Q Consensus       332 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~  410 (768)
                      -+.|+|..+.+|.+++.+|.|.+||+....         +.......|..+...++|+| +..+|++.+.|..|.+||..
T Consensus       169 ll~ys~skr~lL~~asd~G~VtlwDv~g~s---------p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~  239 (673)
T KOG4378|consen  169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMS---------PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR  239 (673)
T ss_pred             EeecccccceeeEeeccCCeEEEEeccCCC---------cccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence            999999988899999999999999998643         23344567999999999999 56788999999999999998


Q ss_pred             CCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC-CceeEEeecCCCcEEEEEEEeCC
Q 004214          411 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLRASFLTRG  476 (768)
Q Consensus       411 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~  476 (768)
                      ..+....+. ...+.++++|+++|.+|++|...|.|..||++. ..++..+..|...|++++|-+..
T Consensus       240 s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  240 SQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            777666655 567899999999999999999999999999986 46889999999999999997764

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1.4e-21  Score=186.53  Aligned_cols=289  Identities=21%  Similarity=0.316  Sum_probs=208.3

Q ss_pred             EEEEccCCCceEEEEecC---eEEEEeeccCcccceeeEEEeeecccCCceeEEEEec------CCCCEEEEEeCCCcEE
Q 004214          195 AATVLPSNQGLLCVTADQ---QLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG------EEEQYLAVATNIEQVQ  265 (768)
Q Consensus       195 ~~~~~~~~~~l~~~~~dg---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~l~~~~~~~~i~  265 (768)
                      -..+-|..+.++|+-.+.   .+.+|-.....   ..+.....+. ......|+.|..      ..++++|+|+.+..|.
T Consensus       130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e---~nlYvHHD~i-lpafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie  205 (463)
T KOG0270|consen  130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEE---ENLYVHHDFI-LPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE  205 (463)
T ss_pred             cceeccCCcEEEEeeccCCceEEEEEEEcCCC---cceeEeccee-ccCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence            445567777777776543   23333322221   1121111111 122334555532      3467999999999999


Q ss_pred             EEECCCcee---------------------eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee
Q 004214          266 VYDLSSMSC---------------------SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT  324 (768)
Q Consensus       266 i~d~~~~~~---------------------~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  324 (768)
                      |||+.-...                     .....+|++.|..+.  +...-+.+|++|+.|.+|.+||+.++++..++.
T Consensus       206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls--~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~  283 (463)
T KOG0270|consen  206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALS--WNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT  283 (463)
T ss_pred             EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHH--hccccceeEEecCCCceEEEEEcCCCCcceehh
Confidence            999852111                     011246888888887  555566689999999999999999999999999


Q ss_pred             cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC-CCEEEEEeCCCc
Q 004214          325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRT  403 (768)
Q Consensus       325 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~  403 (768)
                      .|.+.|.++.|+|..+.+|++|+.|++|.+.|.+....          ....-...+.|-.++|.|. ...+++++.||+
T Consensus       284 ~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~----------s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~  353 (463)
T KOG0270|consen  284 HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN----------SGKEWKFDGEVEKVAWDPHSENSFFVSTDDGT  353 (463)
T ss_pred             hcCCceeEEEecCCCceEEEeccccceEEeeeccCccc----------cCceEEeccceEEEEecCCCceeEEEecCCce
Confidence            99999999999999999999999999999999985221          1111223567899999994 567788889999


Q ss_pred             EEEEeCCCC-ceEEEEeccCCCeEEEEEccCC-CEEEEeeCCCcEEEEeCCCCceeEEeecCC---CcEEEEEEEeCCC-
Q 004214          404 ACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEGHT---SSVLRASFLTRGA-  477 (768)
Q Consensus       404 i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~~~-  477 (768)
                      ++-+|++.. +++.+++.|..+|.++++++.- .+++|++.|+.|++|++....+-.... |.   +...|.++.|+-. 
T Consensus       354 v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~-~~~~~~rl~c~~~~~~~a~  432 (463)
T KOG0270|consen  354 VYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE-HSFKLGRLHCFALDPDVAF  432 (463)
T ss_pred             EEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc-ccccccceeecccCCCcce
Confidence            999999876 8999999999999999999864 688999999999999986544322111 22   2345556666544 


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEE
Q 004214          478 QIVSCGADGLVKLWTVRTGECIA  500 (768)
Q Consensus       478 ~l~s~~~dg~i~iwd~~~~~~~~  500 (768)
                      .++.|+..+.++|||+.++..+.
T Consensus       433 ~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  433 TLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             EEEecCccceEEEeecccChhHH
Confidence            56778888889999998876554

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=1.1e-21  Score=183.11  Aligned_cols=248  Identities=24%  Similarity=0.346  Sum_probs=190.4

Q ss_pred             eecccCCceeEEEEecC-CCCEEEEEeCCCcEEEEECCC----------------ceeeeeeeCCccceEEEeeeeecCC
Q 004214          234 RLVGYNEEILDLKFLGE-EEQYLAVATNIEQVQVYDLSS----------------MSCSYVLAGHSEIVLCLDTCALSSG  296 (768)
Q Consensus       234 ~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~i~i~d~~~----------------~~~~~~~~~~~~~v~~l~~~~~~~~  296 (768)
                      ...+|.+.+..+...+- +..+.++-+..|.|+||++..                .+.+.++.+|...=++++  ++|-.
T Consensus       146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~Ld--WSp~~  223 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLD--WSPIK  223 (440)
T ss_pred             cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeee--ccccc
Confidence            34455556666555443 566777788899999999853                345677888998888888  44432


Q ss_pred             CEEEEEEeCCCeEEEEeCCCceEEE---eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccccee
Q 004214          297 KILIVTGSKDNSVRLWDSESRCCVG---VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK  373 (768)
Q Consensus       297 ~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  373 (768)
                      .-.+++|..-+.|++|...++....   .+.+|+..|-.++|+|....+|++|+-||+|+|||++...        .+..
T Consensus       224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~--------~~~~  295 (440)
T KOG0302|consen  224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP--------KKAA  295 (440)
T ss_pred             ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC--------ccce
Confidence            2238899888999999988876433   3567999999999999999999999999999999999762        2334


Q ss_pred             eEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC---CceEEEEeccCCCeEEEEEccC-CCEEEEeeCCCcEEEE
Q 004214          374 AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD---LVSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIW  449 (768)
Q Consensus       374 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~v~~v~~s~~-~~~l~t~~~d~~i~iw  449 (768)
                      ....+|...|+.+.|+.+-.+||+|+.||+++|||++.   ++++..++-|..+|+++.|+|. ...|++++.|.+|.||
T Consensus       296 ~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiW  375 (440)
T KOG0302|consen  296 VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIW  375 (440)
T ss_pred             eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence            44488999999999999888999999999999999975   5688899999999999999996 4678888999999999


Q ss_pred             eCCCCce----------------eEEeecC--CCcEEEEEEEeCC-CEEEEEeCCCcEEEEE
Q 004214          450 SISDGSC----------------LKTFEGH--TSSVLRASFLTRG-AQIVSCGADGLVKLWT  492 (768)
Q Consensus       450 d~~~~~~----------------~~~~~~~--~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd  492 (768)
                      |+.--.-                .+-+.-|  ...+-.+.|+++- .+|++.+.|| +.||.
T Consensus       376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             EeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence            9853210                1111123  3456677887753 3788888888 45553

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=3.5e-21  Score=176.62  Aligned_cols=294  Identities=18%  Similarity=0.253  Sum_probs=221.6

Q ss_pred             eeecccCCceeEEEEec---C-CCCEEEEEeCCCcEEEEECCCceeeeeee-----CCccceEEEeeeeecC-CCEEEEE
Q 004214          233 KRLVGYNEEILDLKFLG---E-EEQYLAVATNIEQVQVYDLSSMSCSYVLA-----GHSEIVLCLDTCALSS-GKILIVT  302 (768)
Q Consensus       233 ~~~~~~~~~i~~~~~~~---~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~v~~l~~~~~~~-~~~~l~~  302 (768)
                      +...+++.+|..++|.+   . ..+.+++++. ..+.+|.....--++.++     .|......++|++... +..++++
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~  110 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA  110 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence            34456778899999863   2 3344555444 788888876544333332     3566666677666655 5778999


Q ss_pred             EeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCC
Q 004214          303 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD  382 (768)
Q Consensus       303 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (768)
                      |+.-|.|++.|+.++++...+.+|...|..+.+.|..++++++++.|.+|++|++++...       .....-..+|...
T Consensus       111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C-------v~VfGG~egHrde  183 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC-------VAVFGGVEGHRDE  183 (385)
T ss_pred             ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE-------EEEecccccccCc
Confidence            999999999999999999999999999999999999999999999999999999985421       1122234679999


Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEeCCCCce------E----------------E------EEeccCCCeEEEEEccCC
Q 004214          383 INSLAVAPNDSLVCTGSQDRTACVWRLPDLVS------V----------------V------TFRGHKRGIWSVEFSPVD  434 (768)
Q Consensus       383 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~------~----------------~------~~~~~~~~v~~v~~s~~~  434 (768)
                      |.++.|+++|.+|++++.|.++++|++...+.      .                .      +-..|...|-|+.|-  |
T Consensus       184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g  261 (385)
T KOG1034|consen  184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G  261 (385)
T ss_pred             EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h
Confidence            99999999999999999999999999873211      0                0      122366777777776  7


Q ss_pred             CEEEEeeCCCcEEEEeCC-CC-------------ceeEEeecCCCcEEEEEE--EeCCCEEEEEeCCCcEEEEECCCCeE
Q 004214          435 QVVITASGDKTIKIWSIS-DG-------------SCLKTFEGHTSSVLRASF--LTRGAQIVSCGADGLVKLWTVRTGEC  498 (768)
Q Consensus       435 ~~l~t~~~d~~i~iwd~~-~~-------------~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~i~iwd~~~~~~  498 (768)
                      +++++-+-++.|..|-.. -+             ..+.++.-....|.-+.|  .|-++.|+.|...|.|++||++..++
T Consensus       262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep  341 (385)
T KOG1034|consen  262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP  341 (385)
T ss_pred             hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence            899998888999999861 11             123444445556666655  46688999999999999999998765


Q ss_pred             E--EEec--cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          499 I--ATYD--KHEDKIWALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       499 ~--~~~~--~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      .  .++.  .....|...+||.|+..|+....|+.|.-||..
T Consensus       342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            2  1221  234568899999999999999999999999854

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=1.2e-21  Score=194.92  Aligned_cols=307  Identities=17%  Similarity=0.252  Sum_probs=205.2

Q ss_pred             EEEeecCCCcEEEEECCCCEE------EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEE--ecCc
Q 004214            2 FALLEGADRKVLVWDVDGGFC------THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT--LDKH   73 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~------~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~--l~~h   73 (768)
                      +||.+-.||.|.++|...-..      +.....|.+.|..+.|-| |+ ..|++++.|.++++||+.+++++..  +.||
T Consensus        66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge-~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH  143 (720)
T KOG0321|consen   66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GE-SLLVSASGDSTIRPWDVKTSRLVGGRLNLGH  143 (720)
T ss_pred             eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cc-eeEEEccCCceeeeeeeccceeecceeeccc
Confidence            588999999999999865432      244557999999999999 43 4599999999999999999999877  8999


Q ss_pred             cceeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEec-C-CCCCccccccccc------hhhhhc
Q 004214           74 FSRVTSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI-P-PGSAFDSFLSSYN------QQTIKK  144 (768)
Q Consensus        74 ~~~V~~l~fs~d~~-~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~-~-~~~~~~~~~~~~~------~~~~~~  144 (768)
                      .+.|.+++|.|++. .+++||.||.|.|||++-...-..-.....+....-. | +............      ......
T Consensus       144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv  223 (720)
T KOG0321|consen  144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV  223 (720)
T ss_pred             ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence            99999999999654 6789999999999998643310000000000000000 0 0000000000000      000001


Q ss_pred             ccCCcceEEEEeeC-CcEEEEEEcCCceeeeecCCceeeccc-ccCcccceeEEEEccCCCceEEEEecCeEEEEeeccC
Q 004214          145 KRRSLEIHFITVGE-RGIVRMWNADSACLYEQKSSDVTISFE-MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV  222 (768)
Q Consensus       145 ~~~~~~~~~~~~~~-~g~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~  222 (768)
                      ....++..++++|. |+.|++||+................+. ......+++.+.....+.++++...|+.|++|++...
T Consensus       224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~  303 (720)
T KOG0321|consen  224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL  303 (720)
T ss_pred             EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence            11123447788887 999999999988433322222211111 1333567788888888999999999999999998865


Q ss_pred             cccceeeEEEeeeccc-CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee-eeeeeCCccceEEEeeeeecCCCEEE
Q 004214          223 PEKKMELILSKRLVGY-NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-SYVLAGHSEIVLCLDTCALSSGKILI  300 (768)
Q Consensus       223 ~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~~~l  300 (768)
                      .....     ....++ ...++--....+++.+++.|+.++..++|.+.+.+. ...+.+|.-.|++++|+..+...  +
T Consensus       304 s~sP~-----~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~--v  376 (720)
T KOG0321|consen  304 SISPV-----AEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTP--V  376 (720)
T ss_pred             CcCch-----hhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCC--c
Confidence            42111     111111 122222333567999999999999999999987654 45678999999999976665554  7


Q ss_pred             EEEeCCCeEEEEeCCCc
Q 004214          301 VTGSKDNSVRLWDSESR  317 (768)
Q Consensus       301 ~~~~~dg~i~iwd~~~~  317 (768)
                      ++++.|..+++|++..+
T Consensus       377 ~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  377 ATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             eeeccCcceEEEeccCc
Confidence            88899999999998654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=3.4e-22  Score=186.45  Aligned_cols=220  Identities=24%  Similarity=0.413  Sum_probs=177.3

Q ss_pred             ecccCcEEEEEEecCC-CcEEEEEeCCCeEEEEeCCCCCCC------CccccccceeeEeeccCCCeEEEEEccC-CCEE
Q 004214          324 TGHMGAVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDD------AEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLV  395 (768)
Q Consensus       324 ~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l  395 (768)
                      .+|.+.+..+...+-+ ..+.++-+..|.|.+|++...-..      ........+...+.+|...-.+++|||- ...+
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            3577777777777664 345667788999999998753111      1112345677788899999999999992 3347


Q ss_pred             EEEeCCCcEEEEeCCCCce---EEEEeccCCCeEEEEEccC-CCEEEEeeCCCcEEEEeCCCC---ceeEEeecCCCcEE
Q 004214          396 CTGSQDRTACVWRLPDLVS---VVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDG---SCLKTFEGHTSSVL  468 (768)
Q Consensus       396 ~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~v~~s~~-~~~l~t~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~  468 (768)
                      ++|..-+.|++|...++.-   ...+.+|+..|..++|||. ...|++|+-||+|+|||++.+   .++.+ +.|.+.|+
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVN  306 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVN  306 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCcee
Confidence            8888888999999887642   2346679999999999996 468999999999999999988   45554 78999999


Q ss_pred             EEEEEeCCCEEEEEeCCCcEEEEECCC---CeEEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCHHHHHHH
Q 004214          469 RASFLTRGAQIVSCGADGLVKLWTVRT---GECIATYDKHEDKIWALAVGKK-TEMFATGGSDALVNLWHDSTAAEREEA  544 (768)
Q Consensus       469 ~~~~s~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~s~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~  544 (768)
                      .+.|+.+-.+|++|+.||+++|||+++   ++++.+++.|..+|+++.|+|. ...|+++|.|..|.+||+..+...++.
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~  386 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI  386 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence            999999888999999999999999875   6789999999999999999995 567889999999999999876554433

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.88  E-value=5.3e-21  Score=174.92  Aligned_cols=234  Identities=17%  Similarity=0.286  Sum_probs=182.8

Q ss_pred             CEEEEEEeCCCeEEEEeCCCceEEEeeec--ccC---cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccc
Q 004214          297 KILIVTGSKDNSVRLWDSESRCCVGVGTG--HMG---AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK  371 (768)
Q Consensus       297 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  371 (768)
                      ..++++.+.+.-|++||.-+|+....+.+  |..   ...+++|+|||. .|+ ++....|++||+.........-  ..
T Consensus       123 t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlf-aGykrcirvFdt~RpGr~c~vy--~t  198 (406)
T KOG2919|consen  123 TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLF-AGYKRCIRVFDTSRPGRDCPVY--TT  198 (406)
T ss_pred             cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEe-ecccceEEEeeccCCCCCCcch--hh
Confidence            34588888899999999999888777654  333   346899999988 344 5677899999995432211100  00


Q ss_pred             eeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC-CCcEEEE
Q 004214          372 AKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIW  449 (768)
Q Consensus       372 ~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d~~i~iw  449 (768)
                      ...-..+..+-|.+++|+| +.+.+++|+....+-||.-....++..+-+|.+.|+.++|.++|+.|++|+. |-.|..|
T Consensus       199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~W  278 (406)
T KOG2919|consen  199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCW  278 (406)
T ss_pred             hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence            0111223456789999999 5569999999999999999999999999999999999999999999999875 6789999


Q ss_pred             eCCC-CceeEEeecCCC-cEEEEEE--EeCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 004214          450 SISD-GSCLKTFEGHTS-SVLRASF--LTRGAQIVSCGADGLVKLWTVRT-GECIATYDKHEDKIWALAVGKKTEMFATG  524 (768)
Q Consensus       450 d~~~-~~~~~~~~~~~~-~v~~~~~--s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~~~l~s~  524 (768)
                      |++. +.++..+..|.. .-.++.|  .|+|++|++|+.||.|++||++. |..+..+..|...++.++++|--..++++
T Consensus       279 DiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilats  358 (406)
T KOG2919|consen  279 DIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATS  358 (406)
T ss_pred             eehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeec
Confidence            9986 467778887776 4455655  57899999999999999999998 78788888899999999999998888888


Q ss_pred             eCCCcEEEEEcCC
Q 004214          525 GSDALVNLWHDST  537 (768)
Q Consensus       525 ~~dg~v~vw~~~~  537 (768)
                      +..   ++|...+
T Consensus       359 sGq---r~f~~~~  368 (406)
T KOG2919|consen  359 SGQ---RIFKYPK  368 (406)
T ss_pred             cCc---eeecCCC
Confidence            755   4554443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.88  E-value=3.5e-21  Score=185.66  Aligned_cols=293  Identities=14%  Similarity=0.251  Sum_probs=218.4

Q ss_pred             eEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEE--eCCCcEEEEECCCc--eeeeeeeC
Q 004214          205 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA--TNIEQVQVYDLSSM--SCSYVLAG  280 (768)
Q Consensus       205 l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~~~~i~i~d~~~~--~~~~~~~~  280 (768)
                      +.+++....+.+|+...........     .......+.+++|...+.  |+++  +.|..+++|.-...  .....-..
T Consensus         5 l~~aS~gd~~kl~D~s~~~~~~~~~-----~~t~~pg~~s~~w~~~n~--lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~   77 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLETKSEYV-----HQTAEPGDFSFNWQRRNF--LVVASMAGDKVMRIKEKDGKTPEVPRVRKL   77 (673)
T ss_pred             eeeeccCCceEEeecccccCccccc-----cCCCCCcceeeeccccce--EEEeecCCceeEEEecccCCCCccceeecc
Confidence            5666777788999887654221111     011122377888875443  5544  44667788864432  22222222


Q ss_pred             CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCC
Q 004214          281 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL  360 (768)
Q Consensus       281 ~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  360 (768)
                      ..+.-.|++  ..+.. .++++|+..+.|+|||++...+.+.+++|...|+++.++.... ++++++..|.|.+..+...
T Consensus        78 ~gd~~~Cv~--~~s~S-~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~  153 (673)
T KOG4378|consen   78 TGDNAFCVA--CASQS-LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTK  153 (673)
T ss_pred             ccchHHHHh--hhhcc-eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccC
Confidence            222444554  22333 4599999999999999998888899999999999999998744 8999999999999998754


Q ss_pred             CCCCccccccceeeEeeccCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceEEEE-eccCCCeEEEEEccCC-CEE
Q 004214          361 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPDLVSVVTF-RGHKRGIWSVEFSPVD-QVV  437 (768)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~v~~s~~~-~~l  437 (768)
                      ..         ........+..|+-+.|+|..+ +|.+++.+|.|.+||+....++..+ ..|..+...++|+|.. .+|
T Consensus       154 ~~---------tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~  224 (673)
T KOG4378|consen  154 QK---------TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL  224 (673)
T ss_pred             cc---------ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence            32         1111122345567899999654 5678899999999999887776654 5699999999999965 678


Q ss_pred             EEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCcEEEEEEcC
Q 004214          438 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT-GECIATYDKHEDKIWALAVGK  516 (768)
Q Consensus       438 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~  516 (768)
                      ++.+.|..|.+||.........+. ...+...++|+++|.+|+.|...|.|..||++. ..++.++..|...|++++|-|
T Consensus       225 vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~  303 (673)
T KOG4378|consen  225 VSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP  303 (673)
T ss_pred             EEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence            889999999999999877777665 667889999999999999999999999999985 468999999999999999977


Q ss_pred             CC
Q 004214          517 KT  518 (768)
Q Consensus       517 ~~  518 (768)
                      ..
T Consensus       304 s~  305 (673)
T KOG4378|consen  304 SP  305 (673)
T ss_pred             cc
Confidence            64

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.88  E-value=5.4e-18  Score=183.13  Aligned_cols=352  Identities=33%  Similarity=0.576  Sum_probs=267.9

Q ss_pred             EEEeecCCCcEEEEECCCCE-EEEEEEcCCC-cEEEEEE-eeCCCccEEEE-EeCCCcEEEEECCC-CeeEEEecCccce
Q 004214            2 FALLEGADRKVLVWDVDGGF-CTHYFKGHKG-VVSSILF-HPDTDKSLLFS-GSDDATVRVWDLLA-KKCVATLDKHFSR   76 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~-~~~~l~gh~~-~V~~l~~-spd~~~~~l~s-g~~dg~I~iWd~~~-~~~~~~l~~h~~~   76 (768)
                      .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ ++++.. +++. +..|+.+.+||... ......+..|...
T Consensus        79 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  157 (466)
T COG2319          79 LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSES  157 (466)
T ss_pred             EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcce-EEeccCCCCccEEEEEecCCCeEEEEEecCccc
Confidence            45677789999999999887 7788887554 8888888 777663 2444 45599999999988 8888999999999


Q ss_pred             eEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEE
Q 004214           77 VTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT  155 (768)
Q Consensus        77 V~~l~fs~d~~~L~s~~~-dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (768)
                      |..++|+|++.++++++. |+.+++|+...+..+..                                            
T Consensus       158 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------  193 (466)
T COG2319         158 VTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST--------------------------------------------  193 (466)
T ss_pred             EEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe--------------------------------------------
Confidence            999999999999998886 99999999876332211                                            


Q ss_pred             eeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeee
Q 004214          156 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL  235 (768)
Q Consensus       156 ~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~  235 (768)
                                                                                                     +
T Consensus       194 -------------------------------------------------------------------------------~  194 (466)
T COG2319         194 -------------------------------------------------------------------------------L  194 (466)
T ss_pred             -------------------------------------------------------------------------------e
Confidence                                                                                           1


Q ss_pred             cccCCceeEEEEecCCCC-EEEEEeCCCcEEEEECCCceeee-eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214          236 VGYNEEILDLKFLGEEEQ-YLAVATNIEQVQVYDLSSMSCSY-VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD  313 (768)
Q Consensus       236 ~~~~~~i~~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd  313 (768)
                      .+|...+.+++|. +++. .++.++.++.+++||...+.... .+.+|.... ...  +.+.+. ++++++.|+.+++|+
T Consensus       195 ~~~~~~v~~~~~~-~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~--~~~~~~-~~~~~~~d~~~~~~~  269 (466)
T COG2319         195 AGHTDPVSSLAFS-PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSS--FSPDGS-LLASGSSDGTIRLWD  269 (466)
T ss_pred             ccCCCceEEEEEc-CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEe--ECCCCC-EEEEecCCCcEEEee
Confidence            1245567777777 4444 44555889999999988777777 688888774 322  556664 478999999999999


Q ss_pred             CCCceE-EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE--eeccCCCeEEEEEcc
Q 004214          314 SESRCC-VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV--VAAHGKDINSLAVAP  390 (768)
Q Consensus       314 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~  390 (768)
                      ...... ...+.+|...+.++.|.|++. .+++++.|+.+.+|+.....          ....  ...|...+..+.+.+
T Consensus       270 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~  338 (466)
T COG2319         270 LRSSSSLLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGK----------LLSSLTLKGHEGPVSSLSFSP  338 (466)
T ss_pred             ecCCCcEEEEEecCCccEEEEEECCCCC-EEEEeeCCCcEEEEEcCCCc----------eEEEeeecccCCceEEEEECC
Confidence            986654 444467899999999999756 56668888999999877432          1111  246777789999943


Q ss_pred             CCCEEEEE-eCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEE-eeCCCcEEEEeCCCCceeEEeecCCCcEE
Q 004214          391 NDSLVCTG-SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVIT-ASGDKTIKIWSISDGSCLKTFEGHTSSVL  468 (768)
Q Consensus       391 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t-~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  468 (768)
                      ++..++.+ ..|+.+.+|+............ ...+..+.+++ ...+.. +..++.+.+|+.........+..+...+.
T Consensus       339 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (466)
T COG2319         339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVT  416 (466)
T ss_pred             CCCEEEEeecCCCcEEeeecCCCceeEEecC-CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEE
Confidence            43555555 6889999999988773333322 22288999999 544444 68899999999998888877775557888


Q ss_pred             EEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214          469 RASFLTRGAQIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       469 ~~~~s~~~~~l~s~~~dg~i~iwd~~~  495 (768)
                      ...+++++..+++++.++.+++|+..+
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         417 SLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             EEEECCCCcEEEEecCCCcEEEEeccC
Confidence            999999999999999999999999988

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=2.9e-21  Score=184.39  Aligned_cols=239  Identities=23%  Similarity=0.378  Sum_probs=188.1

Q ss_pred             CEEEEEEeCCCeEEEEeCCCce---EE------------------EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEE
Q 004214          297 KILIVTGSKDNSVRLWDSESRC---CV------------------GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW  355 (768)
Q Consensus       297 ~~~l~~~~~dg~i~iwd~~~~~---~~------------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw  355 (768)
                      ++++|.|+.|..|.|||+.-..   +.                  ....+|+..|.+++|+..-+++|++||.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            3469999999999999975211   00                  11236999999999999989999999999999999


Q ss_pred             eCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCC
Q 004214          356 SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD  434 (768)
Q Consensus       356 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~  434 (768)
                      |+..+          ++..++..|.+.|.++.|+| ....|++|+.|++|.++|++........-...+.|..++|.|..
T Consensus       272 D~~~g----------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~s  341 (463)
T KOG0270|consen  272 DVDTG----------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHS  341 (463)
T ss_pred             EcCCC----------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCC
Confidence            99954          46667778999999999999 57899999999999999998533332222356789999999975


Q ss_pred             -CEEEEeeCCCcEEEEeCCCC-ceeEEeecCCCcEEEEEEEeCC-CEEEEEeCCCcEEEEECCCCeE--EEEeccCCCcE
Q 004214          435 -QVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRTGEC--IATYDKHEDKI  509 (768)
Q Consensus       435 -~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v  509 (768)
                       ..++++..||+|+-+|++.. +++.++..|.++|.++++++.- .+|++++.|+.|++|++....+  +....-.-+..
T Consensus       342 e~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl  421 (463)
T KOG0270|consen  342 ENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRL  421 (463)
T ss_pred             ceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccce
Confidence             56777889999999999875 9999999999999999998754 4789999999999999865433  22222122446


Q ss_pred             EEEEEcCCCC-EEEEEeCCCcEEEEEcCCHHHHHHHH
Q 004214          510 WALAVGKKTE-MFATGGSDALVNLWHDSTAAEREEAF  545 (768)
Q Consensus       510 ~~l~~s~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~  545 (768)
                      .|+++.|+-. .++.||..+.++||+..+.....+..
T Consensus       422 ~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF  458 (463)
T KOG0270|consen  422 HCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAF  458 (463)
T ss_pred             eecccCCCcceEEEecCccceEEEeecccChhHHHhh
Confidence            6778888654 57778888899999998876655443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.88  E-value=2e-21  Score=172.76  Aligned_cols=306  Identities=20%  Similarity=0.326  Sum_probs=206.3

Q ss_pred             EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEec-CccceeEEEEEcCCCCEEEEEeCCCeEEE
Q 004214           22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD-KHFSRVTSMAITSDGSTLISAGRDKVVNL  100 (768)
Q Consensus        22 ~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~-~h~~~V~~l~fs~d~~~L~s~~~dg~i~v  100 (768)
                      .+..|++|.+.|+++.|-.+++   |.+|..-|.|++|++.+.+.+..++ .|...|+.+.-.|+ ..|.+-++|+.+.+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r---L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l   81 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER---LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL   81 (323)
T ss_pred             CeeEeccccchheehhhccchh---hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence            3567889999999999988755   9999999999999999999998888 56779999999987 57899999999999


Q ss_pred             EECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCce
Q 004214          101 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV  180 (768)
Q Consensus       101 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~  180 (768)
                      |++..+..+..-.  -.++.+.|.+.                                                      
T Consensus        82 w~ia~s~~i~i~S--i~~nslgFCrf------------------------------------------------------  105 (323)
T KOG0322|consen   82 WTIAYSAFISIHS--IVVNSLGFCRF------------------------------------------------------  105 (323)
T ss_pred             EEccCcceEEEee--eeccccccccc------------------------------------------------------
Confidence            9987643221110  00111111110                                                      


Q ss_pred             eecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC
Q 004214          181 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN  260 (768)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  260 (768)
                                      .+.+.+...      -.+..|.....                            +....--++.
T Consensus       106 ----------------Sl~~~~k~~------eqll~yp~rgs----------------------------de~h~~D~g~  135 (323)
T KOG0322|consen  106 ----------------SLVKKPKNS------EQLLEYPSRGS----------------------------DETHKQDGGD  135 (323)
T ss_pred             ----------------eeccCCCcc------hhheecCCccc----------------------------chhhhhccCc
Confidence                            000000000      00000000000                            0000000000


Q ss_pred             CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE----------EEeeecccCcE
Q 004214          261 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC----------VGVGTGHMGAV  330 (768)
Q Consensus       261 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~v  330 (768)
                      .-++++-|-.       -.+..+.+.|..+-+......++++|-.+|.+.+||+.++..          ......|..+|
T Consensus       136 ~tqv~i~dd~-------~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpv  208 (323)
T KOG0322|consen  136 TTQVQIADDS-------ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPV  208 (323)
T ss_pred             cceeEccCch-------hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcc
Confidence            0111111110       112334455554333334455688899999999999998733          33345789999


Q ss_pred             EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214          331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP  410 (768)
Q Consensus       331 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  410 (768)
                      .++.+.+.-. .=++|+.+..+..|++.....      .........-....|..+.+-||++.+|+++.|+.|++|..+
T Consensus       209 lsldyas~~~-rGisgga~dkl~~~Sl~~s~g------slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr  281 (323)
T KOG0322|consen  209 LSLDYASSCD-RGISGGADDKLVMYSLNHSTG------SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR  281 (323)
T ss_pred             eeeeechhhc-CCcCCCccccceeeeeccccC------cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEec
Confidence            9999987533 457788888899998874321      112222223344568889999999999999999999999999


Q ss_pred             CCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214          411 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI  451 (768)
Q Consensus       411 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~  451 (768)
                      ++.++..++-|...|.+++|+|+..++|+++.|++|.+|++
T Consensus       282 tl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  282 TLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999999999999999999999986

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2e-21  Score=206.96  Aligned_cols=249  Identities=21%  Similarity=0.344  Sum_probs=202.7

Q ss_pred             cceEEEeeeeecCCC-EEEEEEeCCCeEEEEeCCCc------eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEE
Q 004214          283 EIVLCLDTCALSSGK-ILIVTGSKDNSVRLWDSESR------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW  355 (768)
Q Consensus       283 ~~v~~l~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw  355 (768)
                      .....++|+.+.++. -+|+.|..||.|.+||...-      ..+.....|.+.|..+.|++...+++++|+.||.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            445667654443331 25899999999999997652      34556778999999999999988899999999999999


Q ss_pred             eCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCC--CeEEEEEcc
Q 004214          356 SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR--GIWSVEFSP  432 (768)
Q Consensus       356 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~v~~s~  432 (768)
                      |+..........        .......|.+++|+. ....|++++.+|.+.|||++..+++..+..+..  .+..++|+|
T Consensus       145 Dlnn~~tP~~~~--------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP  216 (1049)
T KOG0307|consen  145 DLNKPETPFTPG--------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHP  216 (1049)
T ss_pred             ccCCcCCCCCCC--------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCC
Confidence            998643221111        233457899999998 467889999999999999999988888776655  477899999


Q ss_pred             CC-CEEEEeeCCC---cEEEEeCCCC-ceeEEeecCCCcEEEEEEEeCC-CEEEEEeCCCcEEEEECCCCeEEEEeccCC
Q 004214          433 VD-QVVITASGDK---TIKIWSISDG-SCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRTGECIATYDKHE  506 (768)
Q Consensus       433 ~~-~~l~t~~~d~---~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  506 (768)
                      ++ ..|++++.|.   .|.+||++.. .+++++++|...|.++.|++.+ ++|++++.|+.|.+|+..+|+.+..+....
T Consensus       217 ~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~  296 (1049)
T KOG0307|consen  217 DHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG  296 (1049)
T ss_pred             CCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC
Confidence            86 4566666543   5999999865 5788899999999999999866 899999999999999999999999998888


Q ss_pred             CcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCHH
Q 004214          507 DKIWALAVGKKTE-MFATGGSDALVNLWHDSTAA  539 (768)
Q Consensus       507 ~~v~~l~~s~~~~-~l~s~~~dg~v~vw~~~~~~  539 (768)
                      +.+..+.|+|... .+++++-||.|.|+.+.+..
T Consensus       297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            8899999999766 78888999999999986543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.86  E-value=4.4e-20  Score=184.26  Aligned_cols=274  Identities=22%  Similarity=0.329  Sum_probs=217.3

Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214          241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV  320 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  320 (768)
                      .|.+++|-|++.++++.++  ..+.+||...|.....+.+|.+.|+|++  ++.+|+. +++|+.|..|.+|+..-.-.+
T Consensus        14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVA--ys~dGkr-FASG~aDK~VI~W~~klEG~L   88 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVA--YAKDGKR-FASGSADKSVIIWTSKLEGIL   88 (1081)
T ss_pred             chheeEECCCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEE--EccCCce-eccCCCceeEEEeccccccee
Confidence            7889999876666655554  5899999999999999999999999998  7777776 999999999999987643333


Q ss_pred             EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC
Q 004214          321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ  400 (768)
Q Consensus       321 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  400 (768)
                      .  ..|...|.|+.|+|-.. .+++++-. ..-+|.......            ........+.+++|..||.+++.|-.
T Consensus        89 k--YSH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~qK~V------------~K~kss~R~~~CsWtnDGqylalG~~  152 (1081)
T KOG1538|consen   89 K--YSHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQKSV------------SKHKSSSRIICCSWTNDGQYLALGMF  152 (1081)
T ss_pred             e--eccCCeeeEeecCchHH-Hhhhcchh-hccccChhhhhH------------HhhhhheeEEEeeecCCCcEEEEecc
Confidence            2  36999999999999854 67777643 356786542210            01112356889999999999999999


Q ss_pred             CCcEEEEeCCCCceEEEEe---ccCCCeEEEEEccCC-----CEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEE
Q 004214          401 DRTACVWRLPDLVSVVTFR---GHKRGIWSVEFSPVD-----QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF  472 (768)
Q Consensus       401 dg~i~i~d~~~~~~~~~~~---~~~~~v~~v~~s~~~-----~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  472 (768)
                      ||+|.+-+- ++++...+.   |...+|++++|+|..     ..+++.....++.+|.+ +|+.+..-+.-.-...|+.+
T Consensus       153 nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisY  230 (1081)
T KOG1538|consen  153 NGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISY  230 (1081)
T ss_pred             CceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhhee
Confidence            999999864 344333333   467899999999963     57888888888999887 56666544444455678999


Q ss_pred             EeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       473 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      .++|.|++.|+.|+.+++|. +.|-.+.++......||.++..|++++++.|+.||+|.-|++...
T Consensus       231 f~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  231 FTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS  295 (1081)
T ss_pred             ccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence            99999999999999999996 577888888778889999999999999999999999999987543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=2.9e-19  Score=164.12  Aligned_cols=297  Identities=19%  Similarity=0.310  Sum_probs=216.3

Q ss_pred             cceeEEEEcc----CCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec---CCCCEEEEEeCCCc
Q 004214          191 RGFTAATVLP----SNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG---EEEQYLAVATNIEQ  263 (768)
Q Consensus       191 ~~~~~~~~~~----~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~~~~~~  263 (768)
                      ..+..++|.+    +...+++....+.+.+|........  .+...-.-..+......++|.-   ....++|+|+.-|.
T Consensus        39 ~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~i--r~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~Gv  116 (385)
T KOG1034|consen   39 KPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGI--RLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGV  116 (385)
T ss_pred             CccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccce--eeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeE
Confidence            3444455442    2334555556677888887655311  1111111123566777788743   24678999999999


Q ss_pred             EEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee---cccCcEEEEEEecCCC
Q 004214          264 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT---GHMGAVGAVAFSKKLQ  340 (768)
Q Consensus       264 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~  340 (768)
                      |+|.|..++++...+.+|...|..+.  +.|....+++++++|..|++|++++..++..+.   +|.+.|.++.|+++|.
T Consensus       117 IrVid~~~~~~~~~~~ghG~sINeik--~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd  194 (385)
T KOG1034|consen  117 IRVIDVVSGQCSKNYRGHGGSINEIK--FHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD  194 (385)
T ss_pred             EEEEecchhhhccceeccCccchhhh--cCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC
Confidence            99999999999999999999999998  778888889999999999999999999998875   6999999999999987


Q ss_pred             cEEEEEeCCCeEEEEeCCCCCC--C-----------Ccccc-----ccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC
Q 004214          341 NFLVSGSSDHTIKVWSFDGLSD--D-----------AEQPM-----NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR  402 (768)
Q Consensus       341 ~~l~s~~~dg~i~iwd~~~~~~--~-----------~~~~~-----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  402 (768)
                       ++++++.|.++++|+++...-  .           ...++     ......+...|...|-|+.|-  |.++++-+-++
T Consensus       195 -~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscen  271 (385)
T KOG1034|consen  195 -RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCEN  271 (385)
T ss_pred             -eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCc
Confidence             899999999999999983210  0           00000     011111334577777777775  57899989899


Q ss_pred             cEEEEeCCC-Cc-------------eEEEEeccCCCeEEEE--EccCCCEEEEeeCCCcEEEEeCCCCcee--EEee--c
Q 004214          403 TACVWRLPD-LV-------------SVVTFRGHKRGIWSVE--FSPVDQVVITASGDKTIKIWSISDGSCL--KTFE--G  462 (768)
Q Consensus       403 ~i~i~d~~~-~~-------------~~~~~~~~~~~v~~v~--~s~~~~~l~t~~~d~~i~iwd~~~~~~~--~~~~--~  462 (768)
                      .|..|.... .+             .+..+.-....|+-+.  |.|-++.||.|...|.|.+||++...+.  .++.  .
T Consensus       272 aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~  351 (385)
T KOG1034|consen  272 AIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK  351 (385)
T ss_pred             eEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc
Confidence            999998721 11             2233333445566655  4566899999999999999999887653  2222  2


Q ss_pred             CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214          463 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVR  494 (768)
Q Consensus       463 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  494 (768)
                      ....|...+|+.||..|+..+.|++|.-||..
T Consensus       352 ~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  352 SGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            24578999999999999999999999999853

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.85  E-value=3.4e-19  Score=168.47  Aligned_cols=326  Identities=22%  Similarity=0.292  Sum_probs=215.6

Q ss_pred             CCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC---------eeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEE
Q 004214           30 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK---------KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL  100 (768)
Q Consensus        30 ~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~---------~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~v  100 (768)
                      ..+|..+.|.+++. ..+|||+.|..|+||-+..+         +.+..|..|...|+++.|+|+|..|+||+.+|.|.+
T Consensus        13 ~~pv~s~dfq~n~~-~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSL-NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCceEEEEeccCcc-cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            45899999998765 24999999999999987532         235678889999999999999999999999999999


Q ss_pred             EECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCce
Q 004214          101 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV  180 (768)
Q Consensus       101 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~  180 (768)
                      |-...-.                                                        +.+.++. .        
T Consensus        92 Wk~~~~~--------------------------------------------------------~~~~d~e-~--------  106 (434)
T KOG1009|consen   92 WKQGDVR--------------------------------------------------------IFDADTE-A--------  106 (434)
T ss_pred             EEecCcC--------------------------------------------------------Cccccch-h--------
Confidence            9654300                                                        0000000 0        


Q ss_pred             eecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC
Q 004214          181 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN  260 (768)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  260 (768)
                                                                     .                                
T Consensus       107 -----------------------------------------------~--------------------------------  107 (434)
T KOG1009|consen  107 -----------------------------------------------D--------------------------------  107 (434)
T ss_pred             -----------------------------------------------h--------------------------------
Confidence                                                           0                                


Q ss_pred             CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCC
Q 004214          261 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ  340 (768)
Q Consensus       261 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  340 (768)
                            -+-+.......+.+|...++.++  +.+++.. +++|+.|+.+++||+..|.....+..|...+..++|.|-++
T Consensus       108 ------~~ke~w~v~k~lr~h~~diydL~--Ws~d~~~-l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q  178 (434)
T KOG1009|consen  108 ------LNKEKWVVKKVLRGHRDDIYDLA--WSPDSNF-LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ  178 (434)
T ss_pred             ------hCccceEEEEEecccccchhhhh--ccCCCce-eeeeeccceEEEEEeccceeEeeccccccccceeecchhhh
Confidence                  00011122235566777777775  5566654 99999999999999999999999999999999999999866


Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC-CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 004214          341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK-DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR  419 (768)
Q Consensus       341 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  419 (768)
                       ++++-+.|...+.+.+...             .....+.. ...+-++.+.        .....++|.=++++      
T Consensus       179 -yv~s~s~dr~~~~~~~~~~-------------~~~~~~~~~~m~~~~~~~~--------e~~s~rLfhDeTlk------  230 (434)
T KOG1009|consen  179 -YVASKSSDRHPEGFSAKLK-------------QVIKRHGLDIMPAKAFNER--------EGKSTRLFHDETLK------  230 (434)
T ss_pred             -hhhhhccCcccceeeeeee-------------eeeeeeeeeEeeecccCCC--------CcceeeeeecCchh------
Confidence             7888888886666655421             11111110 0011111111        11122233222211      


Q ss_pred             ccCCCeEEEEEccCCCEEEEeeC----CC-----cEEEEeCCC-CceeEEeecCCCcEEEEEEEe---------------
Q 004214          420 GHKRGIWSVEFSPVDQVVITASG----DK-----TIKIWSISD-GSCLKTFEGHTSSVLRASFLT---------------  474 (768)
Q Consensus       420 ~~~~~v~~v~~s~~~~~l~t~~~----d~-----~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~---------------  474 (768)
                         .-...++|+|+|.+|++.+.    .+     ..++|+-.. .++...+.+...+...+.|+|               
T Consensus       231 ---sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~  307 (434)
T KOG1009|consen  231 ---SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLF  307 (434)
T ss_pred             ---hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccccc
Confidence               11345677888887776542    12     224444322 234555555556666666654               


Q ss_pred             ---CCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHH
Q 004214          475 ---RGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER  541 (768)
Q Consensus       475 ---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~  541 (768)
                         .+-.++.++. ..|+|||.++.+++.... -|-..|+.++|++||.+|+..+.||.+.+-.+++.+.-
T Consensus       308 ~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  308 VLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             ccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence               2233455554 569999999988777654 48899999999999999999999999988887765543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.4e-19  Score=167.30  Aligned_cols=272  Identities=19%  Similarity=0.287  Sum_probs=197.8

Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecC-CCEEEEEEeCCCeEEEEeCCCceEEEe--eeccc-C
Q 004214          253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSVRLWDSESRCCVGV--GTGHM-G  328 (768)
Q Consensus       253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~-~  328 (768)
                      ..+|++...|.|++||..+++.+..+.++...+..+.  +... ....+.+++.||+|++||+++......  +..+. .
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vr--f~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~  118 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVR--FISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT  118 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceE--EecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence            5789999999999999999999999999998888887  4443 455699999999999999987655443  33444 4


Q ss_pred             cEEEEEEecCCCcEEEEEe----CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCc
Q 004214          329 AVGAVAFSKKLQNFLVSGS----SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRT  403 (768)
Q Consensus       329 ~v~~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~  403 (768)
                      +..+++.+-. .+++++|+    .+-.|.+||++..+.        ........|.+.|+++.|+| +.++|++|+.||.
T Consensus       119 ~f~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq--------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL  189 (376)
T KOG1188|consen  119 PFICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQ--------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL  189 (376)
T ss_pred             cceEeeccCc-CCeEEeccccccCceEEEEEEeccccc--------hhhhhhhhccCcceeEEecCCCCCeEEeecccce
Confidence            5666666545 33677765    367899999986421        13445577999999999999 6789999999999


Q ss_pred             EEEEeCCCCc---eEEEEeccCCCeEEEEEccCC-CEEEEeeCCCcEEEEeCCCCceeEEeecCC------------CcE
Q 004214          404 ACVWRLPDLV---SVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEGHT------------SSV  467 (768)
Q Consensus       404 i~i~d~~~~~---~~~~~~~~~~~v~~v~~s~~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~------------~~v  467 (768)
                      |.+||+....   .+...-.|...|.++.|..++ +.|.+-+...+..+|+++.+.+...++...            ..+
T Consensus       190 vnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~  269 (376)
T KOG1188|consen  190 VNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV  269 (376)
T ss_pred             EEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence            9999986542   222233477889999999877 457888888999999999998776665321            111


Q ss_pred             EEEEEEeCCCEEEEEeC-CCcEEEEECC---CC---eEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214          468 LRASFLTRGAQIVSCGA-DGLVKLWTVR---TG---ECIATYDK-HEDKIWALAVGKKTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       468 ~~~~~s~~~~~l~s~~~-dg~i~iwd~~---~~---~~~~~~~~-~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~  535 (768)
                      .......++..++.++. -|...++-+.   ++   +.+..+.+ |..-|.++.|...+.++.|||+||.+.+|..
T Consensus       270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            11111123344444444 5555555432   33   34455555 6667888999889999999999999999985

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=3.3e-19  Score=190.32  Aligned_cols=247  Identities=18%  Similarity=0.326  Sum_probs=198.5

Q ss_pred             CCceeEEEEecCCCC---EEEEEeCCCcEEEEECCCc------eeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214          239 NEEILDLKFLGEEEQ---YLAVATNIEQVQVYDLSSM------SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV  309 (768)
Q Consensus       239 ~~~i~~~~~~~~~~~---~l~~~~~~~~i~i~d~~~~------~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i  309 (768)
                      ......++|.+....   +++.|..||.|.+||....      ..+.....|.+.|..++  +.+..+.++++|+.||.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLD--fN~~q~nlLASGa~~geI  141 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLD--FNPFQGNLLASGADDGEI  141 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeee--ccccCCceeeccCCCCcE
Confidence            335567777654443   6899999999999998752      23456688999999999  888888789999999999


Q ss_pred             EEEeCCCceEEEee--ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeecc--CCCeEE
Q 004214          310 RLWDSESRCCVGVG--TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH--GKDINS  385 (768)
Q Consensus       310 ~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~  385 (768)
                      .|||+..-+.-..+  ....+.|.+++|+..-.++|++++.+|.+.|||++....          ...+..+  ...+..
T Consensus       142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p----------ii~ls~~~~~~~~S~  211 (1049)
T KOG0307|consen  142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP----------IIKLSDTPGRMHCSV  211 (1049)
T ss_pred             EEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc----------ccccccCCCccceee
Confidence            99999874433332  225678999999998888999999999999999985421          1111112  245789


Q ss_pred             EEEccCC-CEEEEEeCCC---cEEEEeCCCC-ceEEEEeccCCCeEEEEEccCC-CEEEEeeCCCcEEEEeCCCCceeEE
Q 004214          386 LAVAPND-SLVCTGSQDR---TACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKT  459 (768)
Q Consensus       386 ~~~s~~~-~~l~~~~~dg---~i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~~~-~~l~t~~~d~~i~iwd~~~~~~~~~  459 (768)
                      ++|+|++ ..+++++.|.   .|.+||++.. .++..+.+|..+|.++.|++.+ .+|++++.|+.|.+|+.++++.+..
T Consensus       212 l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~  291 (1049)
T KOG0307|consen  212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE  291 (1049)
T ss_pred             eeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeee
Confidence            9999965 4566666554   6999998754 5677788999999999999977 8999999999999999999999999


Q ss_pred             eecCCCcEEEEEEEeCCC-EEEEEeCCCcEEEEECCCCe
Q 004214          460 FEGHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTGE  497 (768)
Q Consensus       460 ~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~  497 (768)
                      +.....++..+.|+|... .+++++-||.|-||.+..+.
T Consensus       292 ~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  292 LPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             cCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            999889999999999766 77888899999999987654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=6.9e-20  Score=180.37  Aligned_cols=259  Identities=19%  Similarity=0.247  Sum_probs=196.7

Q ss_pred             eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC--------ceEEEeeecccCcEEEEEEecCCCcEEEEEe
Q 004214          276 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES--------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS  347 (768)
Q Consensus       276 ~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  347 (768)
                      .++..|.+.+..+.  +.+... .|++++.||.+.+|+++.        -+++.++.+|.++|.|+++.+++. .+++|+
T Consensus       288 ~tl~s~~d~ir~l~--~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-~~ysgg  363 (577)
T KOG0642|consen  288 FTLRSHDDCIRALA--FHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-HCYSGG  363 (577)
T ss_pred             eeeecchhhhhhhh--cCCCCC-eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce-EEEeec
Confidence            36667888888875  444444 499999999999999932        356788999999999999999966 799999


Q ss_pred             CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEecc--CCCe
Q 004214          348 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH--KRGI  425 (768)
Q Consensus       348 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v  425 (768)
                      .||+|+.|++..........-.......+.+|.+.|..+++|+....|++++.||+++.|+.....+ .++...  .+.-
T Consensus       364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P  442 (577)
T KOG0642|consen  364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP  442 (577)
T ss_pred             cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence            9999999998843332222223345667789999999999999999999999999999999876655 333321  2234


Q ss_pred             EEEEEccCC-CEEEEeeCCCcEEEEeCCCCceeEEeec-------CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe
Q 004214          426 WSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEG-------HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE  497 (768)
Q Consensus       426 ~~v~~s~~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  497 (768)
                      .++++-... ...++...-+.--+++...+..+..+..       ....+..+.+.|.+.+.+++..|+.|+++|..+++
T Consensus       443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence            556655433 2222222223333444444444444431       12456778899999999999999999999999999


Q ss_pred             EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHH
Q 004214          498 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA  539 (768)
Q Consensus       498 ~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~  539 (768)
                      ++.....|...++++++.|+|.+|++++.||.+++|++....
T Consensus       523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             cchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence            999999999999999999999999999999999999986543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.83  E-value=9.7e-19  Score=157.72  Aligned_cols=274  Identities=25%  Similarity=0.351  Sum_probs=201.3

Q ss_pred             EEEEEeC----CCcEEEEECCCcee---eeeeeCCccceEEEeeeeecCCCEEEEEEeCC-------CeEEEEeCCCc--
Q 004214          254 YLAVATN----IEQVQVYDLSSMSC---SYVLAGHSEIVLCLDTCALSSGKILIVTGSKD-------NSVRLWDSESR--  317 (768)
Q Consensus       254 ~l~~~~~----~~~i~i~d~~~~~~---~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~--  317 (768)
                      .+++|++    +++|.+.++.....   ...+..|.+.|..++  ..|.+..+|+++..+       -.+.||.+...  
T Consensus        28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~la--s~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~  105 (370)
T KOG1007|consen   28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLA--SSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG  105 (370)
T ss_pred             EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhh--cCCCCCceEEEEEeccCCCcceeeEEEEecccccC
Confidence            4455554    56777766654432   235667888999998  667777778877553       24678987532  


Q ss_pred             -------eEEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214          318 -------CCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA  389 (768)
Q Consensus       318 -------~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  389 (768)
                             +++..+. .+-+.|.|+.|.|++.. +++-. |..|.+|++..........    .......+....++-+|+
T Consensus       106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k-lasm~-dn~i~l~~l~ess~~vaev----~ss~s~e~~~~ftsg~Ws  179 (370)
T KOG1007|consen  106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDK-LASMD-DNNIVLWSLDESSKIVAEV----LSSESAEMRHSFTSGAWS  179 (370)
T ss_pred             ccccchhhHhhcCCHHHhCceeeEEEcCCCCe-eEEec-cCceEEEEcccCcchheee----cccccccccceecccccC
Confidence                   2233333 45678999999998764 55444 8899999998764321110    111112256677889999


Q ss_pred             c--CCCEEEEEeCCCcEEEEeCCCCceEEEEe-ccCCCeEEEEEccCCC-EEEEeeCCCcEEEEeCCC-CceeEEeecCC
Q 004214          390 P--NDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWSVEFSPVDQ-VVITASGDKTIKIWSISD-GSCLKTFEGHT  464 (768)
Q Consensus       390 ~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~v~~s~~~~-~l~t~~~d~~i~iwd~~~-~~~~~~~~~~~  464 (768)
                      |  +|+.+++. .|+++..||+++.+....+. .|...|..+.|+|+-+ +|++++.||.|+|||.+. ..++..+.+|.
T Consensus       180 pHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~Hs  258 (370)
T KOG1007|consen  180 PHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHS  258 (370)
T ss_pred             CCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCc
Confidence            9  77777774 57999999999987776665 5888999999999864 788899999999999876 46899999999


Q ss_pred             CcEEEEEEEeC-CCEEEEEeCCCcEEEEECCCC-----------------------------eEEEEeccCCCcEEEEEE
Q 004214          465 SSVLRASFLTR-GAQIVSCGADGLVKLWTVRTG-----------------------------ECIATYDKHEDKIWALAV  514 (768)
Q Consensus       465 ~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~-----------------------------~~~~~~~~~~~~v~~l~~  514 (768)
                      ..|.++.|+|. .+++++|+.|..|.+|...+-                             -.+.++..|.+.|.+++|
T Consensus       259 HWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aW  338 (370)
T KOG1007|consen  259 HWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAW  338 (370)
T ss_pred             eEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEee
Confidence            99999999985 457789999999999965310                             134577889999999999


Q ss_pred             cCCCCE-EEEEeCCCcEEEEEcC
Q 004214          515 GKKTEM-FATGGSDALVNLWHDS  536 (768)
Q Consensus       515 s~~~~~-l~s~~~dg~v~vw~~~  536 (768)
                      |.-..+ +|+-+.||.+.|=++.
T Consensus       339 SsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  339 SSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ccCCCeeEEEeccCceEEeecCC
Confidence            986655 6778999999886654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.83  E-value=2e-18  Score=179.86  Aligned_cols=276  Identities=18%  Similarity=0.234  Sum_probs=207.0

Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE--EE----eeecccCcEEEEEE
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC--VG----VGTGHMGAVGAVAF  335 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~----~~~~~~~~v~~~~~  335 (768)
                      +.+.+|++...........-...|.|+.  +.+.+..+++.|..+|.|.+||+..+..  ..    ....|..+++.+.|
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~--f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLK--FCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEE--eccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            4799999988754444445567888988  6677777899999999999999987654  22    23368899999999


Q ss_pred             ecCCC-cEEEEEeCCCeEEEEeCCCCCCCCcccccccee--eEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCC
Q 004214          336 SKKLQ-NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK--AVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPD  411 (768)
Q Consensus       336 ~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~  411 (768)
                      ..+-. .-+++++.||.|..|+++...............  .........+++++|.| +...+++|+.+|.|.--+...
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g  379 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG  379 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence            76422 238888889999999987654322111100000  11112335688999998 567899999999988744332


Q ss_pred             C--------ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC-CCceeEEeecCCCcEEEEEEEeCCC-EEEE
Q 004214          412 L--------VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS-DGSCLKTFEGHTSSVLRASFLTRGA-QIVS  481 (768)
Q Consensus       412 ~--------~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s  481 (768)
                      .        +....+..|.++|.++.++|-+..++..+.|.+|+||... ...++..+..+...|++++|||-.. .+++
T Consensus       380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~  459 (555)
T KOG1587|consen  380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT  459 (555)
T ss_pred             CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence            2        2233566789999999999988777666669999999988 7788888888888999999999764 6678


Q ss_pred             EeCCCcEEEEECCC--CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHH
Q 004214          482 CGADGLVKLWTVRT--GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA  539 (768)
Q Consensus       482 ~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~  539 (768)
                      +..||.|.+||+..  ..++.+...+....+.+.|++.|+.|++|...|.+.+|++...-
T Consensus       460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l  519 (555)
T KOG1587|consen  460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESL  519 (555)
T ss_pred             EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCchh
Confidence            88899999999864  35666665566667778899999999999999999999997543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.82  E-value=4.3e-18  Score=156.05  Aligned_cols=277  Identities=18%  Similarity=0.288  Sum_probs=193.4

Q ss_pred             EEEEEEeeCCCccEEEEEeCCCcEEEEECCCC-------e-----eEEEecC-ccceeEEEEEc-------CCCCEEEEE
Q 004214           33 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-------K-----CVATLDK-HFSRVTSMAIT-------SDGSTLISA   92 (768)
Q Consensus        33 V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~-------~-----~~~~l~~-h~~~V~~l~fs-------~d~~~L~s~   92 (768)
                      ...+.|+|||..  |++-+.|..+.+|++...       .     ...+++- ....|...+|-       |+..++++.
T Consensus        52 ~kgckWSPDGSc--iL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   52 LKGCKWSPDGSC--ILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hccceeCCCCce--EEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence            456789999998  999999999999998421       0     0111111 23356666664       678899999


Q ss_pred             eCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCcee
Q 004214           93 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL  172 (768)
Q Consensus        93 ~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~  172 (768)
                      +.+.-|.+||.-+|+....+........+                                                   
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~de~---------------------------------------------------  158 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQDEY---------------------------------------------------  158 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhHHhh---------------------------------------------------
Confidence            99999999999999877665433211000                                                   


Q ss_pred             eeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCC
Q 004214          173 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE  252 (768)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  252 (768)
                                        .                                                 ...+++|++ ++
T Consensus       159 ------------------t-------------------------------------------------aAhsL~Fs~-DG  170 (406)
T KOG2919|consen  159 ------------------T-------------------------------------------------AAHSLQFSP-DG  170 (406)
T ss_pred             ------------------h-------------------------------------------------hheeEEecC-CC
Confidence                              0                                                 112233332 22


Q ss_pred             CEEEEEeCCCcEEEEEC-CCceeeee-------eeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee
Q 004214          253 QYLAVATNIEQVQVYDL-SSMSCSYV-------LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT  324 (768)
Q Consensus       253 ~~l~~~~~~~~i~i~d~-~~~~~~~~-------~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  324 (768)
                      ..|.+|.+ ..|++||+ +.|.....       -.+..+.+.|++  ++|.+...++.|+....+-||.-..+.++..+.
T Consensus       171 eqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a--~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg  247 (406)
T KOG2919|consen  171 EQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFA--FSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG  247 (406)
T ss_pred             CeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccccceeeeee--ccCCCCcceeeecccceeeeEecCCCCceeeec
Confidence            23333322 45555555 22221111       123356677777  778777779999999999999999999999999


Q ss_pred             cccCcEEEEEEecCCCcEEEEEe-CCCeEEEEeCCCCCCCCccccccceeeEeeccCC---CeEEEEEccCCCEEEEEeC
Q 004214          325 GHMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK---DINSLAVAPNDSLVCTGSQ  400 (768)
Q Consensus       325 ~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~  400 (768)
                      +|.+.|+.++|.++|.+ |++|+ .|-.|..||++...         .+...+..|..   .-.-....|.+++|++|+.
T Consensus       248 gh~gGvThL~~~edGn~-lfsGaRk~dkIl~WDiR~~~---------~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t  317 (406)
T KOG2919|consen  248 GHGGGVTHLQWCEDGNK-LFSGARKDDKILCWDIRYSR---------DPVYALERHVGDTNQRILFDLDPKGEILASGDT  317 (406)
T ss_pred             ccCCCeeeEEeccCcCe-ecccccCCCeEEEEeehhcc---------chhhhhhhhccCccceEEEecCCCCceeeccCC
Confidence            99999999999999885 55554 58889999998532         12222333332   1123456789999999999


Q ss_pred             CCcEEEEeCCC-CceEEEEeccCCCeEEEEEccCCCEEEEeeCC
Q 004214          401 DRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVDQVVITASGD  443 (768)
Q Consensus       401 dg~i~i~d~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d  443 (768)
                      ||.|++||+++ +..+..+..+...++.++++|--.++++++..
T Consensus       318 dG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  318 DGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             CccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            99999999998 67788888899999999999998899998864

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.82  E-value=2.5e-19  Score=159.57  Aligned_cols=288  Identities=16%  Similarity=0.223  Sum_probs=201.9

Q ss_pred             cccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee-CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC
Q 004214          236 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS  314 (768)
Q Consensus       236 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~  314 (768)
                      .++.+.++++.|-.  ..+|..|...|.|.+|++.+......+. .+...|+.+.  ..+. +. +.+-+.|+.+.+|++
T Consensus        11 Rp~~~~v~s~~fqa--~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq--~~p~-d~-l~tqgRd~~L~lw~i   84 (323)
T KOG0322|consen   11 RPHSSSVTSVLFQA--NERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQ--SIPN-DS-LDTQGRDPLLILWTI   84 (323)
T ss_pred             ccccchheehhhcc--chhhhcccccceEEEEEeecCccchhhhhhccceeecee--ecCC-cc-hhhcCCCceEEEEEc
Confidence            37788888888853  3469999999999999999998888887 5677888875  4443 44 889999999999999


Q ss_pred             CCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCC-eEEEEeCCCCCCCCccc-cccc----eeeEeeccCCCeEEEEE
Q 004214          315 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-TIKVWSFDGLSDDAEQP-MNLK----AKAVVAAHGKDINSLAV  388 (768)
Q Consensus       315 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~-~~~~----~~~~~~~~~~~i~~~~~  388 (768)
                      ..+..+..   |.-.+.++.|.+-.   +...+... ..-.++-+......... ....    ......+..+.+.+..+
T Consensus        85 a~s~~i~i---~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~  158 (323)
T KOG0322|consen   85 AYSAFISI---HSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK  158 (323)
T ss_pred             cCcceEEE---eeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence            87654433   44455555555431   22222211 11122211111000000 0000    00011123345555554


Q ss_pred             cc-CC--CEEEEEeCCCcEEEEeCCCCce----------EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC-
Q 004214          389 AP-ND--SLVCTGSQDRTACVWRLPDLVS----------VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-  454 (768)
Q Consensus       389 s~-~~--~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~-  454 (768)
                      .. ++  -++++|-++|.+.+||+.++..          ......|..+|.++.|.+.-..=++|+.+..+..|++... 
T Consensus       159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~  238 (323)
T KOG0322|consen  159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST  238 (323)
T ss_pred             cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence            33 22  3567788999999999998733          3344468999999999987666678888888999988643 


Q ss_pred             -ce--eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 004214          455 -SC--LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVN  531 (768)
Q Consensus       455 -~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~  531 (768)
                       .+  ...+.-.+..|..+.+-||++.+++++.||.|+||+.++..++..+..|.+.|.+++|+|+.+.+|+++.|+.|.
T Consensus       239 gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rIS  318 (323)
T KOG0322|consen  239 GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARIS  318 (323)
T ss_pred             CcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEE
Confidence             22  122333445678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEc
Q 004214          532 LWHD  535 (768)
Q Consensus       532 vw~~  535 (768)
                      +|++
T Consensus       319 LWkL  322 (323)
T KOG0322|consen  319 LWKL  322 (323)
T ss_pred             eeec
Confidence            9985

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=1e-19  Score=179.22  Aligned_cols=276  Identities=20%  Similarity=0.317  Sum_probs=191.8

Q ss_pred             EEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCC--------CeeEEEecCccceeEEEEEcCCCCEEEEEeCC
Q 004214           24 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA--------KKCVATLDKHFSRVTSMAITSDGSTLISAGRD   95 (768)
Q Consensus        24 ~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~--------~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~d   95 (768)
                      .++..|...|++++|+|....  |++++.||++++|+++.        -+++.+|.+|.++|.|+++++++.++++||.|
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~--lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D  365 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPV--LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID  365 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCe--EEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence            367789999999999996555  99999999999999932        26789999999999999999999999999999


Q ss_pred             CeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeee
Q 004214           96 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ  175 (768)
Q Consensus        96 g~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~  175 (768)
                      |+|+.|++....                .|...                                               
T Consensus       366 g~I~~w~~p~n~----------------dp~ds-----------------------------------------------  382 (577)
T KOG0642|consen  366 GTIRCWNLPPNQ----------------DPDDS-----------------------------------------------  382 (577)
T ss_pred             ceeeeeccCCCC----------------Ccccc-----------------------------------------------
Confidence            999999874210                00000                                               


Q ss_pred             cCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEE
Q 004214          176 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL  255 (768)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  255 (768)
                                                                                                      
T Consensus       383 --------------------------------------------------------------------------------  382 (577)
T KOG0642|consen  383 --------------------------------------------------------------------------------  382 (577)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecc--cCcEEEE
Q 004214          256 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH--MGAVGAV  333 (768)
Q Consensus       256 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~  333 (768)
                                 ||  .......+.||.+.++.+.  +++.... |++++.||++++|+.....+ .++...  .+.-.++
T Consensus       383 -----------~d--p~vl~~~l~Ghtdavw~l~--~s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsv  445 (577)
T KOG0642|consen  383 -----------YD--PSVLSGTLLGHTDAVWLLA--LSSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSV  445 (577)
T ss_pred             -----------cC--cchhccceeccccceeeee--ecccccc-eeeecCCceEEeeccCCcCc-cccCCccccCCcceE
Confidence                       00  0001125667888887775  4444443 88889999999998876655 222211  1222344


Q ss_pred             EEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 004214          334 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV  413 (768)
Q Consensus       334 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  413 (768)
                      .+......+.++...-+.-.++++..........   ............++-+..+|.+.+.+++..|+.|+++|..+++
T Consensus       446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~---s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFE---SSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             eeccchhHhhhhhcccccccchhhhhhhheeecc---ccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence            4433221122222222222233322211100000   0000001122457788899999999999999999999999999


Q ss_pred             eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC
Q 004214          414 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT  464 (768)
Q Consensus       414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~  464 (768)
                      ++.....|...++++++.|+|.+|++++.|+.+++|.+....|+.....|.
T Consensus       523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             cchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            999999999999999999999999999999999999998888887766664

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.82  E-value=5.4e-18  Score=160.40  Aligned_cols=125  Identities=24%  Similarity=0.353  Sum_probs=106.1

Q ss_pred             EEEeecCCCcEEEEECCCC---------EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECC--------C-
Q 004214            2 FALLEGADRKVLVWDVDGG---------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL--------A-   63 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~---------~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~--------~-   63 (768)
                      .+||||.|..|++|-+..+         +.+..|.+|...|+++.|+|+|..  ||||+++|.|.+|-..        + 
T Consensus        28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gel--LASg~D~g~v~lWk~~~~~~~~~d~e  105 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGEL--LASGGDGGEVFLWKQGDVRIFDADTE  105 (434)
T ss_pred             ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCe--eeecCCCceEEEEEecCcCCccccch
Confidence            5899999999999988422         234577899999999999999988  9999999999999765        2 


Q ss_pred             -------CeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecce-eEeeEEecCCCC
Q 004214           64 -------KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE-MVEAVCAIPPGS  128 (768)
Q Consensus        64 -------~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~  128 (768)
                             ......+.+|...|..++|+||+.++++++.|+.+++||+..|+.......+. .+..+++.|-+.
T Consensus       106 ~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q  178 (434)
T KOG1009|consen  106 ADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ  178 (434)
T ss_pred             hhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhh
Confidence                   23456778999999999999999999999999999999999999988876554 367777777665

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=2.2e-18  Score=161.64  Aligned_cols=300  Identities=17%  Similarity=0.225  Sum_probs=205.5

Q ss_pred             EEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECC------CCeeEEEec-CccceeEEEEEcCCCCEEEEEeCCC
Q 004214           24 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL------AKKCVATLD-KHFSRVTSMAITSDGSTLISAGRDK   96 (768)
Q Consensus        24 ~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~------~~~~~~~l~-~h~~~V~~l~fs~d~~~L~s~~~dg   96 (768)
                      ..+.+|.+.|.++.||.++++  |++|+.|..+++|++.      +.+++.... .|.+.|.|++|...+..|++|+.++
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~--L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~  127 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRF--LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG  127 (609)
T ss_pred             hhhhhhccccceeeeccCCeE--EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence            455689999999999999887  9999999999999984      345665554 3668999999999999999999999


Q ss_pred             eEEEEECCCCeeeeeeecce---eEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceee
Q 004214           97 VVNLWDLRDYSCKLTVPTYE---MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY  173 (768)
Q Consensus        97 ~i~vWd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~  173 (768)
                      +|...|+++.+.+..+....   .+..+..+|...                       .|++.+.+|.|.+||.      
T Consensus       128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-----------------------~~~~~t~~~~V~~~D~------  178 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-----------------------TLIVVTRAKLVSFIDN------  178 (609)
T ss_pred             eeEeeecccceeeeeecccCcccceeecccCCCCc-----------------------eEEEEecCceEEEEec------
Confidence            99999999988776665433   333333333322                       4444445555555544      


Q ss_pred             eecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCC
Q 004214          174 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ  253 (768)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  253 (768)
                                                                    ...+.....    .-+........++.|.|....
T Consensus       179 ----------------------------------------------Rd~~~~~~~----~~~AN~~~~F~t~~F~P~~P~  208 (609)
T KOG4227|consen  179 ----------------------------------------------RDRQNPISL----VLPANSGKNFYTAEFHPETPA  208 (609)
T ss_pred             ----------------------------------------------cCCCCCCce----eeecCCCccceeeeecCCCce
Confidence                                                          433211100    112233445677888888889


Q ss_pred             EEEEEeCCCcEEEEECCCceee-ee------eeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecc
Q 004214          254 YLAVATNIEQVQVYDLSSMSCS-YV------LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH  326 (768)
Q Consensus       254 ~l~~~~~~~~i~i~d~~~~~~~-~~------~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  326 (768)
                      +++++...+.+-+||....+.. ..      ++.....-.+..  |.+.|.. +.+--....-.+||+.+..+...-..|
T Consensus       209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~--~~~~G~Q-~msiRR~~~P~~~D~~S~R~~V~k~D~  285 (609)
T KOG4227|consen  209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSL--WSPSGNQ-FMSIRRGKCPLYFDFISQRCFVLKSDH  285 (609)
T ss_pred             eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhee--eCCCCCe-ehhhhccCCCEEeeeecccceeEeccC
Confidence            9999999999999998754422 11      111111112222  7777776 555444455567787775443322223


Q ss_pred             c-------CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCc-------------cccccceeeEeeccCCCeEEE
Q 004214          327 M-------GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE-------------QPMNLKAKAVVAAHGKDINSL  386 (768)
Q Consensus       327 ~-------~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~  386 (768)
                      .       ..+.+++|..+.  -+++|+.+-.|.+|.+........             ...-.....++.+|..-++.+
T Consensus       286 N~~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV  363 (609)
T KOG4227|consen  286 NPNGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV  363 (609)
T ss_pred             CCCcceeeeeeeeeeeecce--eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence            2       356788888763  389999999999999875432211             112234566788999999999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEeC
Q 004214          387 AVAPNDSLVCTGSQDRTACVWRL  409 (768)
Q Consensus       387 ~~s~~~~~l~~~~~dg~i~i~d~  409 (768)
                      .|+|...+|++.+-.+.+++|.-
T Consensus       364 RF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  364 RFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             eecCCcceEeccchhhheecccc
Confidence            99999999999999999999974

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.6e-18  Score=160.27  Aligned_cols=281  Identities=16%  Similarity=0.207  Sum_probs=197.3

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEe--cCcc-ceeE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL--DKHF-SRVT   78 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l--~~h~-~~V~   78 (768)
                      .+|++.+.|.|++||..+|..+..|++|...+..++|..+.....+.+|+.||+|++||+.+......+  ..|. .+..
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~  121 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI  121 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence            478999999999999999999999999999999999987545556999999999999999887665443  4555 4667


Q ss_pred             EEEEcCCCCEEEEEe----CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEE
Q 004214           79 SMAITSDGSTLISAG----RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI  154 (768)
Q Consensus        79 ~l~fs~d~~~L~s~~----~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (768)
                      +++....++.++++.    .+-.|.+||++..+..                                             
T Consensus       122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~---------------------------------------------  156 (376)
T KOG1188|consen  122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL---------------------------------------------  156 (376)
T ss_pred             EeeccCcCCeEEeccccccCceEEEEEEeccccch---------------------------------------------
Confidence            777766677777664    2445666666543210                                             


Q ss_pred             EeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEee
Q 004214          155 TVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKR  234 (768)
Q Consensus       155 ~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~  234 (768)
                                                                                                  +..-
T Consensus       157 ----------------------------------------------------------------------------l~~~  160 (376)
T KOG1188|consen  157 ----------------------------------------------------------------------------LRQL  160 (376)
T ss_pred             ----------------------------------------------------------------------------hhhh
Confidence                                                                                        1112


Q ss_pred             ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceee---eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEE
Q 004214          235 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL  311 (768)
Q Consensus       235 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~---~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~i  311 (768)
                      ...|.+.|++++|.|.+.++|++|+.||-|.+||+.....-   ...-.|...|.++.  |..++-..+.+-+..++..+
T Consensus       161 ~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~ig--w~~~~ykrI~clTH~Etf~~  238 (376)
T KOG1188|consen  161 NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIG--WLSKKYKRIMCLTHMETFAI  238 (376)
T ss_pred             hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeee--eecCCcceEEEEEccCceeE
Confidence            33578899999999999999999999999999999765322   22345667788887  66666334888888999999


Q ss_pred             EeCCCceEEEeeeccc------------CcEEEEEEecCCCcEEEEEeC-CCeEEEEeCCCCCCCCccccccceeeEeec
Q 004214          312 WDSESRCCVGVGTGHM------------GAVGAVAFSKKLQNFLVSGSS-DHTIKVWSFDGLSDDAEQPMNLKAKAVVAA  378 (768)
Q Consensus       312 wd~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  378 (768)
                      |+++.+.+...+....            ..+-. +.+|.+...++.++. -+...++-+.......    .......+.+
T Consensus       239 ~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~----~~~~~a~l~g  313 (376)
T KOG1188|consen  239 YELEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS----LLTEPAILQG  313 (376)
T ss_pred             EEccCCChhhcccCccchhhhHHhhhhhhheee-cccCCCcceEEEeccccCceeEEEeeeccccc----ccCccccccC
Confidence            9999877554433210            01111 112433444544444 5666666554211110    2223333344


Q ss_pred             -cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214          379 -HGKDINSLAVAPNDSLVCTGSQDRTACVWRLP  410 (768)
Q Consensus       379 -~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  410 (768)
                       |..-|+++.|...+.++.+|+.||.+.+|..+
T Consensus       314 ~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  314 GHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             CcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence             67778899999999999999999999999863

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=3e-18  Score=180.28  Aligned_cols=316  Identities=21%  Similarity=0.346  Sum_probs=213.1

Q ss_pred             CCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCc---cceeEEEEEcC-
Q 004214            9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH---FSRVTSMAITS-   84 (768)
Q Consensus         9 dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h---~~~V~~l~fs~-   84 (768)
                      +..|..||..      .+.+..+.-..+.|+|-...  ++++...-.|+|||.+.++.+..|..+   ...|+.+.+-. 
T Consensus      1049 t~~i~~W~~~------~~~~n~~~pk~~~~hpf~p~--i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe 1120 (1387)
T KOG1517|consen 1049 TNPIGNWDQK------FMTGNNQPPKTLKFHPFEPQ--IAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINE 1120 (1387)
T ss_pred             cccccchHHH------HHhcCCCCCceeeecCCCce--eEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecc
Confidence            4445666642      12233345566778886665  888887788999999999999888754   34799999865 


Q ss_pred             -CCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEE
Q 004214           85 -DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVR  163 (768)
Q Consensus        85 -d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~  163 (768)
                       |..+|++++.||.|+||+--...-    .                                    ...++++       
T Consensus      1121 ~D~aLlLtas~dGvIRIwk~y~~~~----~------------------------------------~~eLVTa------- 1153 (1387)
T KOG1517|consen 1121 QDDALLLTASSDGVIRIWKDYADKW----K------------------------------------KPELVTA------- 1153 (1387)
T ss_pred             cchhheeeeccCceEEEeccccccc----C------------------------------------CceeEEe-------
Confidence             566899999999999996321100    0                                    0011111       


Q ss_pred             EEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCcee
Q 004214          164 MWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEIL  243 (768)
Q Consensus       164 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  243 (768)
                       |..-++                                 .+......|                              .
T Consensus      1154 -w~~Ls~---------------------------------~~~~~r~~~------------------------------~ 1169 (1387)
T KOG1517|consen 1154 -WSSLSD---------------------------------QLPGARGTG------------------------------L 1169 (1387)
T ss_pred             -eccccc---------------------------------cCccCCCCC------------------------------e
Confidence             111000                                 000001111                              1


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee-CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc---eE
Q 004214          244 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CC  319 (768)
Q Consensus       244 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~  319 (768)
                      -+.|....+ +|.+++.-..|+|||.....+...++ +....++++.  .....+.++++|..||.|++||.+..   ..
T Consensus      1170 v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS--~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~ 1246 (1387)
T KOG1517|consen 1170 VVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS--ADLVHGNIIAAGFADGSVRVYDRRMAPPDSL 1246 (1387)
T ss_pred             eeehhhhCC-eEEecCCeeEEEEEecccceeEeecccCCCccceeec--ccccCCceEEEeecCCceEEeecccCCcccc
Confidence            122222233 45555556899999999888777664 3455667775  44444556999999999999998753   35


Q ss_pred             EEeeecccCc--EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee--ccCCCeEEEEEccCCCEE
Q 004214          320 VGVGTGHMGA--VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA--AHGKDINSLAVAPNDSLV  395 (768)
Q Consensus       320 ~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l  395 (768)
                      +...+.|...  |..+.+.+.|-.-+++|+.||.|++||++.....       .......  ..++..+++.+++....+
T Consensus      1247 v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e-------~~~~iv~~~~yGs~lTal~VH~hapii 1319 (1387)
T KOG1517|consen 1247 VCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE-------TFLTIVAHWEYGSALTALTVHEHAPII 1319 (1387)
T ss_pred             ceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc-------ccceeeeccccCccceeeeeccCCCee
Confidence            6677788887  9999999987667999999999999999864110       1111111  123468999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEec-------cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 004214          396 CTGSQDRTACVWRLPDLVSVVTFRG-------HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS  455 (768)
Q Consensus       396 ~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~  455 (768)
                      |+|+. +.|+||++... .+..++.       ..+.+.|++|+|..-++|+|+.|.+|.||......
T Consensus      1320 AsGs~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1320 ASGSA-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             eecCc-ceEEEEecChh-hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            99998 99999998533 3332222       24568999999999999999999999999876543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.81  E-value=2.6e-18  Score=161.66  Aligned_cols=213  Identities=16%  Similarity=0.290  Sum_probs=175.1

Q ss_pred             eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeC
Q 004214          322 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ  400 (768)
Q Consensus       322 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~  400 (768)
                      .+.+|+++|..++|+|-+.+.+++||.|.+|.+|.+........   ...+...+.+|...|..++|+| -.+.|++++.
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~---ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~  152 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD---LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS  152 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC---cccceEEEeecceeEEEEeecccchhhHhhccC
Confidence            45689999999999999888999999999999999986543322   2246777899999999999999 4678999999


Q ss_pred             CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCc-EEEEEEEeCCCEE
Q 004214          401 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS-VLRASFLTRGAQI  479 (768)
Q Consensus       401 dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l  479 (768)
                      |.+|.+|++.+++.+.++. |...|+++.|+.+|.+|++++.|+.|||||.++++.+..-.+|.+. -..+.|..+|..+
T Consensus       153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~  231 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF  231 (472)
T ss_pred             CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence            9999999999999999988 9999999999999999999999999999999999999988888763 5667888999855


Q ss_pred             EEEe---CCCcEEEEECCCCe---EEEEeccCCCcEEEEEEcCCCCEEEE-EeCCCcEEEEEcCCHH
Q 004214          480 VSCG---ADGLVKLWTVRTGE---CIATYDKHEDKIWALAVGKKTEMFAT-GGSDALVNLWHDSTAA  539 (768)
Q Consensus       480 ~s~~---~dg~i~iwd~~~~~---~~~~~~~~~~~v~~l~~s~~~~~l~s-~~~dg~v~vw~~~~~~  539 (768)
                      -+|-   .+.++-+||..+-+   ....++. ++.|.---+.+|...+.. |-.|+.|+.|++....
T Consensus       232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  232 TTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            4443   36789999976543   3445553 344544457788777665 4479999999987643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.6e-17  Score=146.30  Aligned_cols=235  Identities=17%  Similarity=0.259  Sum_probs=175.1

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeCCC----------ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCC
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDSES----------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS  361 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  361 (768)
                      +.|.++ +|++|+.+|.|.+..+.+          ...+....+|.+++..++|..+   +|++|+ ||.|+-|..+...
T Consensus        18 ~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~g-dG~V~gw~W~E~~   92 (325)
T KOG0649|consen   18 ISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSGG-DGLVYGWEWNEEE   92 (325)
T ss_pred             hCCcce-EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh---heeecc-CceEEEeeehhhh
Confidence            445555 499999999999998753          2334455899999999999954   566665 4999999887543


Q ss_pred             CCCcccc--cc-ceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEE
Q 004214          362 DDAEQPM--NL-KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI  438 (768)
Q Consensus       362 ~~~~~~~--~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  438 (768)
                      .......  .. .+...-...-..|+++...|..+-++.++.|+.++-||+++|+...+++||+..|.++.--.....++
T Consensus        93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil  172 (325)
T KOG0649|consen   93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL  172 (325)
T ss_pred             hhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee
Confidence            2111000  00 01111111234689999999877777888999999999999999999999999999999855566788


Q ss_pred             EeeCCCcEEEEeCCCCceeEEeecCC----------CcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCc
Q 004214          439 TASGDKTIKIWSISDGSCLKTFEGHT----------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK  508 (768)
Q Consensus       439 t~~~d~~i~iwd~~~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  508 (768)
                      +|++||++|+||+++++++..+....          ..|.+++  -+..+|++|+. ..+.+|.+++.++...+. -..+
T Consensus       173 sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~  248 (325)
T KOG0649|consen  173 SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IPAR  248 (325)
T ss_pred             ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCC-CceeEEeccCCCceEEEe-cccc
Confidence            99999999999999999998876322          2354444  45568887764 569999999999988886 6677


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          509 IWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       509 v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      +..+.|.  ...++++|....|.-|.+..
T Consensus       249 v~~v~F~--~d~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  249 VHLVDFV--DDCVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             eeEeeee--cceEEEeccccceeeeeecc
Confidence            8888885  44677888777888887654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.80  E-value=8.3e-18  Score=175.30  Aligned_cols=280  Identities=17%  Similarity=0.193  Sum_probs=202.1

Q ss_pred             CCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCee--EEEe----cCccceeEEEEE
Q 004214            9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC--VATL----DKHFSRVTSMAI   82 (768)
Q Consensus         9 dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~--~~~l----~~h~~~V~~l~f   82 (768)
                      ++.+.||++.........-.-...|+|++|+|... .++|.|..+|.|.+||+..+..  ...+    ..|..+|+.+.|
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p-~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDP-NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             CceEEEEecCCCCCceEEEecCCceeEEEeccCCc-ceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            34799999977632333333678999999999743 5799999999999999987655  3222    358889999999


Q ss_pred             cCCCC--EEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCc
Q 004214           83 TSDGS--TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG  160 (768)
Q Consensus        83 s~d~~--~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  160 (768)
                      ..+..  -+++++.||.|..|+++...........+        +                                   
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~--------~-----------------------------------  336 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLE--------S-----------------------------------  336 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccchhhcccc--------c-----------------------------------
Confidence            76544  48999999999999765432110000000        0                                   


Q ss_pred             EEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCC
Q 004214          161 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE  240 (768)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (768)
                                                                                          ............
T Consensus       337 --------------------------------------------------------------------~~~~~~~~~~~~  348 (555)
T KOG1587|consen  337 --------------------------------------------------------------------KKHKGQQSSKAV  348 (555)
T ss_pred             --------------------------------------------------------------------cccccccccccc
Confidence                                                                                000000011123


Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee--------eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEE
Q 004214          241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC--------SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW  312 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~--------~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iw  312 (768)
                      .++.+.|.+.+...+++|+..|.|.--+......        ...+..|.++|+++.  +.|-...++.+++ |.+++||
T Consensus       349 ~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~--~nPF~~k~fls~g-DW~vriW  425 (555)
T KOG1587|consen  349 GATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVS--RNPFYPKNFLSVG-DWTVRIW  425 (555)
T ss_pred             ceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeee--cCCCccceeeeec-cceeEec
Confidence            5678888888899999999999998844433221        235567899999998  6666666566666 9999999


Q ss_pred             eCC-CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214          313 DSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN  391 (768)
Q Consensus       313 d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  391 (768)
                      ... ...++..+..+...|++++|+|..+.+|+++..||.+.+||+......        +......+....+.+.|+++
T Consensus       426 s~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~--------Pv~s~~~~~~~l~~~~~s~~  497 (555)
T KOG1587|consen  426 SEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE--------PVLSQKVCSPALTRVRWSPN  497 (555)
T ss_pred             cccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC--------CcccccccccccceeecCCC
Confidence            988 677787888888889999999998889999999999999999855322        22222233556678889999


Q ss_pred             CCEEEEEeCCCcEEEEeCCC
Q 004214          392 DSLVCTGSQDRTACVWRLPD  411 (768)
Q Consensus       392 ~~~l~~~~~dg~i~i~d~~~  411 (768)
                      |+.|++|...|++++|++..
T Consensus       498 g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  498 GKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             CcEEEEecCCCcEEEEEcCc
Confidence            99999999999999999864

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=3.6e-16  Score=159.52  Aligned_cols=511  Identities=13%  Similarity=0.145  Sum_probs=308.0

Q ss_pred             EEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeC----------CCccEEEEEeCCCcEEEEECCCCeeEEEecC
Q 004214            3 ALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD----------TDKSLLFSGSDDATVRVWDLLAKKCVATLDK   72 (768)
Q Consensus         3 latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd----------~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~   72 (768)
                      |++.|+...|.|-|..+-+.++.+.-|...|+.+.|.|-          ....+||++...|.|.+||...+..+..+..
T Consensus        28 LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~  107 (1062)
T KOG1912|consen   28 LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSH  107 (1062)
T ss_pred             eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcC
Confidence            455677899999999999999999999999999999763          2346789999999999999999999999999


Q ss_pred             ccceeEEEEEcC---CC-CEEEEEeCCCeEEEEECCCCeeeeeeecce-eEeeEEecCCCCCccccccccchhhh-----
Q 004214           73 HFSRVTSMAITS---DG-STLISAGRDKVVNLWDLRDYSCKLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQTI-----  142 (768)
Q Consensus        73 h~~~V~~l~fs~---d~-~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~-----  142 (768)
                      |..+|..++|-+   +. ..|+.......+.+|+..+|+......... ...++.+.|-...-..+++..+....     
T Consensus       108 ~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~  187 (1062)
T KOG1912|consen  108 SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLG  187 (1062)
T ss_pred             CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccC
Confidence            999999999976   34 467777778899999999998776654332 23334444433321111111000000     


Q ss_pred             -------------------------------hccc----------------CCcceEEEEeeCCcEEEEEEcCCceeeee
Q 004214          143 -------------------------------KKKR----------------RSLEIHFITVGERGIVRMWNADSACLYEQ  175 (768)
Q Consensus       143 -------------------------------~~~~----------------~~~~~~~~~~~~~g~i~iwd~~~~~~~~~  175 (768)
                                                     ....                .+....++-..-...+.++|++-.+....
T Consensus       188 ~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~v  267 (1062)
T KOG1912|consen  188 LSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAV  267 (1062)
T ss_pred             CCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEE
Confidence                                           0000                00001122222333456666655533221


Q ss_pred             cCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCccccee------------eEEEeeecccCCcee
Q 004214          176 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKME------------LILSKRLVGYNEEIL  243 (768)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~  243 (768)
                      ...        ......+....-.|..+.++|+..||.+.+|.....+.....            ....+...  .-.+.
T Consensus       268 vpi--------er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~--~~rp~  337 (1062)
T KOG1912|consen  268 VPI--------ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPME--EFRPV  337 (1062)
T ss_pred             EEe--------ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeech--hcccc
Confidence            111        111122344444455677899999999999987765432111            00011111  11122


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEECCCceeee-------------------------------eeeCCccceEEEeee-
Q 004214          244 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY-------------------------------VLAGHSEIVLCLDTC-  291 (768)
Q Consensus       244 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-------------------------------~~~~~~~~v~~l~~~-  291 (768)
                      .....|.+...+++--.+|.+.+|.+.+++...                               .-.+|.....|...- 
T Consensus       338 ~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p  417 (1062)
T KOG1912|consen  338 IGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRP  417 (1062)
T ss_pred             eeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeeccc
Confidence            233344456667777777888888877543210                               001344444443311 


Q ss_pred             -------eecCC-------CEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeC---------
Q 004214          292 -------ALSSG-------KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS---------  348 (768)
Q Consensus       292 -------~~~~~-------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---------  348 (768)
                             ..+++       -.+++.|+..|+|.++|+.++.....+..|++.|.++.|.....  +++.+.         
T Consensus       418 ~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss--lvSfsys~~n~~sg~  495 (1062)
T KOG1912|consen  418 MPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS--LVSFSYSHVNSASGG  495 (1062)
T ss_pred             CcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecccee--EEEeeeccccccccc
Confidence                   11111       13688999999999999999999999999999999999987643  555443         


Q ss_pred             -CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEE----------E
Q 004214          349 -DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV----------T  417 (768)
Q Consensus       349 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~  417 (768)
                       -+.+.+-|++++-...       ..........+|+.+..|..|++++....+.-+.+||+++..++.          .
T Consensus       496 vrN~l~vtdLrtGlsk~-------fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~  568 (1062)
T KOG1912|consen  496 VRNDLVVTDLRTGLSKR-------FRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITV  568 (1062)
T ss_pred             eeeeEEEEEcccccccc-------cccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEE
Confidence             2345667777653211       122223456789999999999999999999999999986543211          0


Q ss_pred             E----ecc------------------------CCC---------------------------eEEEEEccCCCEEEEeeC
Q 004214          418 F----RGH------------------------KRG---------------------------IWSVEFSPVDQVVITASG  442 (768)
Q Consensus       418 ~----~~~------------------------~~~---------------------------v~~v~~s~~~~~l~t~~~  442 (768)
                      +    ..|                        ...                           +..++|-  +..++.|..
T Consensus       569 leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk--~d~lv~GD~  646 (1062)
T KOG1912|consen  569 LEWSLPKHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWK--DDILVVGDV  646 (1062)
T ss_pred             EeecccCCCCcccccchhhhhhhhceeeeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhcc--CCeeEeecc
Confidence            0    000                        000                           0112222  557899999


Q ss_pred             CCcEEEEeCCCCceeE--EeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEE--EEcCCC
Q 004214          443 DKTIKIWSISDGSCLK--TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL--AVGKKT  518 (768)
Q Consensus       443 d~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l--~~s~~~  518 (768)
                      +|++.+||+.-.....  ....|........+.|....++.--.|+ +-+||.+....+..+.+-...-..+  .|....
T Consensus       647 ~GNl~~WDlg~R~SRg~~d~p~~ra~~l~~~~ipG~~~~lvl~~d~-~~lwdtk~~~lV~siag~dssfrlldvdlc~~~  725 (1062)
T KOG1912|consen  647 EGNLVVWDLGRRQSRGVRDSPDPRAHSLTFPQIPGDHTTLVLELDW-LPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKS  725 (1062)
T ss_pred             cCceeEEecccccccCccCCCCchhhheecccCCCCceEEEEecCc-ceecccccceeeeeeccCCcceEEEEEEecccC
Confidence            9999999975332222  1222333333334445433444444454 7889998888888886555544444  444333


Q ss_pred             CEEEEEeCCCcEEEEEcCC
Q 004214          519 EMFATGGSDALVNLWHDST  537 (768)
Q Consensus       519 ~~l~s~~~dg~v~vw~~~~  537 (768)
                      ..++  ..|.++++-....
T Consensus       726 ~~~l--~~d~~~Rf~~m~m  742 (1062)
T KOG1912|consen  726 PLVL--PNDNKERFRVMPM  742 (1062)
T ss_pred             ceec--CCCCceeEEeccc
Confidence            3333  3344666655443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.80  E-value=1.7e-17  Score=149.84  Aligned_cols=279  Identities=22%  Similarity=0.321  Sum_probs=202.4

Q ss_pred             CCcEEEEECCCC--EEE-EEEEcCCCcEEEEEEeeCCCccEEEEEeCC-------CcEEEEECCC---------CeeEEE
Q 004214            9 DRKVLVWDVDGG--FCT-HYFKGHKGVVSSILFHPDTDKSLLFSGSDD-------ATVRVWDLLA---------KKCVAT   69 (768)
Q Consensus         9 dg~i~vwd~~~~--~~~-~~l~gh~~~V~~l~~spd~~~~~l~sg~~d-------g~I~iWd~~~---------~~~~~~   69 (768)
                      |+.|.+.+.+.+  ... ..|..|.+.|..++-+|-..+ +|+|+..+       ..+.||.+..         -+++..
T Consensus        39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~-ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~  117 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQR-ILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS  117 (370)
T ss_pred             cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCc-eEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence            566776666433  222 356678999999999997554 56766442       2478998853         345666


Q ss_pred             ec-CccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-eeeecceeEeeEEecCCCCCccccccccchhhhhcccC
Q 004214           70 LD-KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCK-LTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRR  147 (768)
Q Consensus        70 l~-~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (768)
                      |. .+-+.|.|+.|.|++..|++.. |..|.+|++..+..+ ..++...                               
T Consensus       118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~-------------------------------  165 (370)
T KOG1007|consen  118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE-------------------------------  165 (370)
T ss_pred             CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccc-------------------------------
Confidence            65 5667899999999999999887 778999999875431 1111000                               


Q ss_pred             CcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccce
Q 004214          148 SLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM  227 (768)
Q Consensus       148 ~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~  227 (768)
                                                                                                      
T Consensus       166 --------------------------------------------------------------------------------  165 (370)
T KOG1007|consen  166 --------------------------------------------------------------------------------  165 (370)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeEEEeeecccCCceeEEEEec-CCCCEEEEEeCCCcEEEEECCCceeeeee-eCCccceEEEeeeeecCCCEEEEEEeC
Q 004214          228 ELILSKRLVGYNEEILDLKFLG-EEEQYLAVATNIEQVQVYDLSSMSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSK  305 (768)
Q Consensus       228 ~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~~~l~~~~~  305 (768)
                             ..++....++-+|+| .+++.++ .+++++++.||+++..+...+ ..|...|..++  +.|+...+|++|+.
T Consensus       166 -------s~e~~~~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlD--fNpnkq~~lvt~gD  235 (370)
T KOG1007|consen  166 -------SAEMRHSFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLD--FNPNKQHILVTCGD  235 (370)
T ss_pred             -------cccccceecccccCCCCccceEE-EeCCCcEEEEEccchhhhcchhhhhcceeeecc--CCCCceEEEEEcCC
Confidence                   000122334445555 3444444 455699999999998877666 56888999999  88999999999999


Q ss_pred             CCeEEEEeCCC-ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCc-------------------
Q 004214          306 DNSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE-------------------  365 (768)
Q Consensus       306 dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------------------  365 (768)
                      ||.|++||.+. ..++..+.+|...|+++.|+|....++++|+.|..|.+|-.........                   
T Consensus       236 dgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~  315 (370)
T KOG1007|consen  236 DGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERV  315 (370)
T ss_pred             CccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhc
Confidence            99999999975 5678899999999999999998888999999999999997654321110                   


Q ss_pred             cccccceeeEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCC
Q 004214          366 QPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLP  410 (768)
Q Consensus       366 ~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~  410 (768)
                      .+..-....++..|.+.|.+++||.- .=.+|+-++||.+.|=.+.
T Consensus       316 kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  316 KPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            12222334567789999999999984 4567788999999887654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.79  E-value=1.4e-19  Score=185.45  Aligned_cols=289  Identities=22%  Similarity=0.320  Sum_probs=229.9

Q ss_pred             EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214          230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV  309 (768)
Q Consensus       230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i  309 (768)
                      ...+.+.||...|+|..|. ..+.++++|++|..++||..++..+.....||.+.++.++   .+..+.++++++.|..|
T Consensus       181 k~ikrLlgH~naVyca~fD-rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdla---vs~~n~~iaaaS~D~vI  256 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFD-RTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLA---VSSNNTMIAAASNDKVI  256 (1113)
T ss_pred             HHHHHHHhhhhheeeeeec-cccceEeecCccceeeeeeccchhhhccCCCCccccchhc---cchhhhhhhhcccCceE
Confidence            3446688999999999986 4788999999999999999999999999999999999995   34455569999999999


Q ss_pred             EEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214          310 RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA  389 (768)
Q Consensus       310 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  389 (768)
                      ++|.+..+.++..+.+|++.|++++|+|-     .+.+.||++++||.+-....      ..+........+-+.++.|.
T Consensus       257 rvWrl~~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~------y~prp~~~~~~~~~~s~~~~  325 (1113)
T KOG0644|consen  257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRI------YVPRPLKFTEKDLVDSILFE  325 (1113)
T ss_pred             EEEecCCCchHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccc------cCCCCCCcccccceeeeecc
Confidence            99999999999999999999999999995     37889999999998722110      00111111123567788888


Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccC-CCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEE
Q 004214          390 PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL  468 (768)
Q Consensus       390 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  468 (768)
                      .++.-+++|+.|+.-..|.+....      .+...+.-+.++.+ ..+.+++-.+-.+++|++.+|...+.+.+|...+.
T Consensus       326 ~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~y  399 (1113)
T KOG0644|consen  326 NNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVY  399 (1113)
T ss_pred             ccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccccee
Confidence            899999999999998888764321      12221212222222 24666777788899999999999999999999999


Q ss_pred             EEEEEeCCCE-EEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHH
Q 004214          469 RASFLTRGAQ-IVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA  539 (768)
Q Consensus       469 ~~~~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~  539 (768)
                      .+.++|.... ..+++.||...|||+-.|.+++.+....+.+..-.||++|..++....-|.+.|.....++
T Consensus       400 vLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  400 VLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             eeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence            9999997655 4688999999999999999988877566778888999999999988888888887655443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=8.5e-18  Score=164.62  Aligned_cols=222  Identities=16%  Similarity=0.239  Sum_probs=157.7

Q ss_pred             EEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhccc
Q 004214           67 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR  146 (768)
Q Consensus        67 ~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (768)
                      -+.|.||.+.|.++.|+.+|.+|++|+.|-.+.|||.-..+++..+.                                 
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~---------------------------------   89 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS---------------------------------   89 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee---------------------------------
Confidence            45688999999999999999999999999999999987655443332                                 


Q ss_pred             CCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccc
Q 004214          147 RSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK  226 (768)
Q Consensus       147 ~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~  226 (768)
                                                                                                      
T Consensus        90 --------------------------------------------------------------------------------   89 (758)
T KOG1310|consen   90 --------------------------------------------------------------------------------   89 (758)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeEEEeeecccCCceeEEEEecC-CCCEEEEEeCCCcEEEEECCC----------ceeeeeeeCCccceEEEeeeeecC
Q 004214          227 MELILSKRLVGYNEEILDLKFLGE-EEQYLAVATNIEQVQVYDLSS----------MSCSYVLAGHSEIVLCLDTCALSS  295 (768)
Q Consensus       227 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~i~i~d~~~----------~~~~~~~~~~~~~v~~l~~~~~~~  295 (768)
                               .||...|.++.|.|. ++..+++|..|..|++||+..          ......+..|...|.-++  ..+.
T Consensus        90 ---------TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria--~~p~  158 (758)
T KOG1310|consen   90 ---------TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIA--TAPN  158 (758)
T ss_pred             ---------cccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhhee--cCCC
Confidence                     256667788888774 445677788889999999874          234456678999998887  5566


Q ss_pred             CCEEEEEEeCCCeEEEEeCCCceE----------EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC-
Q 004214          296 GKILIVTGSKDNSVRLWDSESRCC----------VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA-  364 (768)
Q Consensus       296 ~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-  364 (768)
                      +...+.+++.||+|+-+|++....          +..+...--...++.++|..+.+|++|+.|-..++||.+...... 
T Consensus       159 ~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~  238 (758)
T KOG1310|consen  159 GPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFR  238 (758)
T ss_pred             CCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCC
Confidence            767799999999999999975211          111112234567899999999999999999999999954321100 


Q ss_pred             -------ccccccceee-EeeccC-----------CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004214          365 -------EQPMNLKAKA-VVAAHG-----------KDINSLAVAPNDSLVCTGSQDRTACVWRLPDL  412 (768)
Q Consensus       365 -------~~~~~~~~~~-~~~~~~-----------~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~  412 (768)
                             ..+....... ...+|-           ..++-++|+|+|..|++.-..-.|+++|+..+
T Consensus       239 s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~  305 (758)
T KOG1310|consen  239 SDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED  305 (758)
T ss_pred             CCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence                   0010000111 111111           22567899999998888776678999998644

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2.1e-17  Score=155.16  Aligned_cols=249  Identities=16%  Similarity=0.194  Sum_probs=181.8

Q ss_pred             ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeC--CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC
Q 004214          237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG--HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS  314 (768)
Q Consensus       237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~  314 (768)
                      .|.+.|.+++|.. ....+.+|..+++|...|+++.+.+..+..  ..+.|+.+.  ..|.++. |++.+.+|.|.+||.
T Consensus       103 ~H~SNIF~L~F~~-~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~--~~P~DN~-~~~~t~~~~V~~~D~  178 (609)
T KOG4227|consen  103 PHRSNIFSLEFDL-ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMD--QHPTDNT-LIVVTRAKLVSFIDN  178 (609)
T ss_pred             ccccceEEEEEcc-CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecc--cCCCCce-EEEEecCceEEEEec
Confidence            3557888999874 567888999999999999999988876642  345899988  7777665 999999999999998


Q ss_pred             CCce-EE--EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214          315 ESRC-CV--GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN  391 (768)
Q Consensus       315 ~~~~-~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  391 (768)
                      +... ..  ..+.........+.|+|..+.+|++.+..+-+.+||.+.......   .......+......-.++.|+|+
T Consensus       179 Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~---~~~~~~~L~~~~~~~M~~~~~~~  255 (609)
T KOG4227|consen  179 RDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVY---QRSMFKGLPQENTEWMGSLWSPS  255 (609)
T ss_pred             cCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHH---hhhccccCcccchhhhheeeCCC
Confidence            7654 11  112234456778899999898999999999999999985432110   00001111111223467889999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEEEEeccC-------CCeEEEEEccCCCEEEEeeCCCcEEEEeCCC-----C-----
Q 004214          392 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHK-------RGIWSVEFSPVDQVVITASGDKTIKIWSISD-----G-----  454 (768)
Q Consensus       392 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~-----~-----  454 (768)
                      |..+.+--....-.+||+.+..+..--..|.       ..+.+++|..+. .+++|+.+-.|++|.+..     |     
T Consensus       256 G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG  334 (609)
T KOG4227|consen  256 GNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIG  334 (609)
T ss_pred             CCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccC
Confidence            9999887776677788887754433222232       246678887654 499999999999998742     1     


Q ss_pred             -------------ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214          455 -------------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       455 -------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  493 (768)
                                   ..+..++||..-+..+.|+|...+|++.+....+++|..
T Consensus       335 ~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  335 HDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             cchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence                         134567899999999999999999999999999999964

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.78  E-value=5.7e-19  Score=180.98  Aligned_cols=285  Identities=18%  Similarity=0.258  Sum_probs=223.2

Q ss_pred             EEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 004214           24 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL  103 (768)
Q Consensus        24 ~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~  103 (768)
                      ..|.||..+|.|.+|...|.+  +++|++|..|+||..+++.++..+.||.+.|+.++.+.+..++++++.|..|++|.+
T Consensus       184 krLlgH~naVyca~fDrtg~~--Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRY--IITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             HHHHhhhhheeeeeeccccce--EeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence            356789999999999998888  999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeeeeecce-eEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCc-eeeeecCCcee
Q 004214          104 RDYSCKLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVT  181 (768)
Q Consensus       104 ~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~-~~~~~~~~~~~  181 (768)
                      .++.++..+..+. .+.+++|+|-.                           +.+.||++++||..-. ..+......  
T Consensus       262 ~~~~pvsvLrghtgavtaiafsP~~---------------------------sss~dgt~~~wd~r~~~~~y~prp~~--  312 (1113)
T KOG0644|consen  262 PDGAPVSVLRGHTGAVTAIAFSPRA---------------------------SSSDDGTCRIWDARLEPRIYVPRPLK--  312 (1113)
T ss_pred             CCCchHHHHhccccceeeeccCccc---------------------------cCCCCCceEeccccccccccCCCCCC--
Confidence            9999998887665 58999998853                           5678999999998822 111111111  


Q ss_pred             ecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCC
Q 004214          182 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI  261 (768)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~  261 (768)
                           ......+....+...+..+++++.++.-..|......             .+...+.-+.+.+....+.+++-.+
T Consensus       313 -----~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~-------------~~~~~lif~t~ssd~~~~~~~ar~~  374 (1113)
T KOG0644|consen  313 -----FTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA-------------WRSNLLIFVTRSSDLSSIVVTARND  374 (1113)
T ss_pred             -----cccccceeeeeccccccccccccCCcccccchhhHhh-------------hhccceEEEeccccccccceeeeee
Confidence                 1122455666777888888899988887777654322             1222222222333334567777788


Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN  341 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  341 (768)
                      -.+.+|++.++.....+.+|...+..+.  +.+-+.....+++.||...|||+-.|.++..+....+.+...+|+++|..
T Consensus       375 ~~~~vwnl~~g~l~H~l~ghsd~~yvLd--~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts  452 (1113)
T KOG0644|consen  375 HRLCVWNLYTGQLLHNLMGHSDEVYVLD--VHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTS  452 (1113)
T ss_pred             eEeeeeecccchhhhhhcccccceeeee--ecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCce
Confidence            8999999999999999999999999998  77777776788999999999999998887766544567778899999874


Q ss_pred             EEEEEeCCCeEEEEeCCCC
Q 004214          342 FLVSGSSDHTIKVWSFDGL  360 (768)
Q Consensus       342 ~l~s~~~dg~i~iwd~~~~  360 (768)
                       ++....-|.+.|.....+
T Consensus       453 -~~lsd~hgql~i~g~gqs  470 (1113)
T KOG0644|consen  453 -IALSDDHGQLYILGTGQS  470 (1113)
T ss_pred             -EecCCCCCceEEeccCCC
Confidence             566666688888765533

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=3.2e-18  Score=165.48  Aligned_cols=301  Identities=23%  Similarity=0.279  Sum_probs=234.6

Q ss_pred             eEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeee-eCCccceEEEeeeeecCCCEEEEEEeCCC
Q 004214          229 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSKDN  307 (768)
Q Consensus       229 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~~~l~~~~~dg  307 (768)
                      +.+...+.+|.+.|..+.|.. .+..+++++.+..|.+||..++.....+ .+|...|....+..+..+.. +++++.||
T Consensus       132 ~~l~~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~t-i~~~s~dg  209 (559)
T KOG1334|consen  132 LRLQKKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRT-IVTSSRDG  209 (559)
T ss_pred             hhhhhcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcC-ceeccccC
Confidence            445567888999999999984 7889999999999999999988776655 67888888877556666666 99999999


Q ss_pred             eEEEEeCCC-ceE--EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC---
Q 004214          308 SVRLWDSES-RCC--VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK---  381 (768)
Q Consensus       308 ~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---  381 (768)
                      .+++=.+.. +.+  ...+..|.++|.-++.-|+...-|.+++.|+.+.-+|++......       .......+..   
T Consensus       210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~-------~~~cr~~~~~~~v  282 (559)
T KOG1334|consen  210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE-------KFVCREADEKERV  282 (559)
T ss_pred             ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc-------eeeeeccCCccce
Confidence            999877643 222  234557999999999999999899999999999999988653221       1112223333   


Q ss_pred             CeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCce------EEEEec------cCCCeEEEEEccCCCEEEEeeCCCcEEE
Q 004214          382 DINSLAVAPND-SLVCTGSQDRTACVWRLPDLVS------VVTFRG------HKRGIWSVEFSPVDQVVITASGDKTIKI  448 (768)
Q Consensus       382 ~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~------~~~~~~------~~~~v~~v~~s~~~~~l~t~~~d~~i~i  448 (768)
                      ...+++..|.. ..+++|+.|..+++||.+....      +..+..      ..-.|++++|+.++.-|+++..|-.|++
T Consensus       283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL  362 (559)
T KOG1334|consen  283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL  362 (559)
T ss_pred             eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence            56789999954 5899999999999999864321      222222      2347999999988877777778889999


Q ss_pred             EeCC--CC----------ceeEE-eecCCC--cEEEEEE-EeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEE
Q 004214          449 WSIS--DG----------SCLKT-FEGHTS--SVLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL  512 (768)
Q Consensus       449 wd~~--~~----------~~~~~-~~~~~~--~v~~~~~-s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l  512 (768)
                      |.-.  .|          ..++. ++||..  .|-.+-| -|...|+++|+.-|.|.||+-.+++.+.-+.+...-|+||
T Consensus       363 F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCL  442 (559)
T KOG1334|consen  363 FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCL  442 (559)
T ss_pred             eccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEecc
Confidence            9532  23          22333 778865  4666665 5788999999999999999999999999888877799999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          513 AVGKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       513 ~~s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      .-+|--..||+.|-|..|+||-..+.
T Consensus       443 EpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  443 EPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             CCCCCCchhhccCCccceeeecCCcc
Confidence            99999999999999999999987543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.77  E-value=8.6e-15  Score=149.28  Aligned_cols=334  Identities=17%  Similarity=0.159  Sum_probs=204.7

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA   81 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~   81 (768)
                      ++++-..+|.|.|.|..+.+.+..+..+...-..++|+|||++  +.+++.||.|.++|+.+++.+.++..... ..+++
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~--~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~   84 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRY--LYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIA   84 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSE--EEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEE
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCE--EEEEcCCCeEEEEECCcccEEEEEecCCC-cceEE
Confidence            5567778999999999999999999876555556789999998  66667899999999999999999986544 67899


Q ss_pred             EcCCCCEEEEEe-CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCc
Q 004214           82 ITSDGSTLISAG-RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG  160 (768)
Q Consensus        82 fs~d~~~L~s~~-~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  160 (768)
                      +|+||++++++. .++.+.++|.++.+.++.++........                                       
T Consensus        85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~---------------------------------------  125 (369)
T PF02239_consen   85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG---------------------------------------  125 (369)
T ss_dssp             E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT---------------------------------------
T ss_pred             EcCCCCEEEEEecCCCceeEeccccccceeecccccccccc---------------------------------------
Confidence            999999998775 6899999999999988877643210000                                       


Q ss_pred             EEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCC
Q 004214          161 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE  240 (768)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (768)
                                                                                                   ..+
T Consensus       126 -----------------------------------------------------------------------------~~~  128 (369)
T PF02239_consen  126 -----------------------------------------------------------------------------PES  128 (369)
T ss_dssp             -----------------------------------------------------------------------------S--
T ss_pred             -----------------------------------------------------------------------------cCC
Confidence                                                                                         011


Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeee--eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214          241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY--VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC  318 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  318 (768)
                      .+..+..++....+++..-..+.|.+.|........  .+. .........  +.+++++++++...++.|-++|..+++
T Consensus       129 Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~--~dpdgry~~va~~~sn~i~viD~~~~k  205 (369)
T PF02239_consen  129 RVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGRFPHDGG--FDPDGRYFLVAANGSNKIAVIDTKTGK  205 (369)
T ss_dssp             -EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEE--E-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred             CceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-ccccccccc--cCcccceeeecccccceeEEEeeccce
Confidence            122222232222233344445777777766543322  222 122233332  778888877777788899999999998


Q ss_pred             EEEeee----cccCcEEEEEEecCCCcEEEEEeC-CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC
Q 004214          319 CVGVGT----GHMGAVGAVAFSKKLQNFLVSGSS-DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS  393 (768)
Q Consensus       319 ~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  393 (768)
                      .+..+.    .|..+...+ .+|....+..++.. ...+-........  .......+..........+ .-+..+|+++
T Consensus       206 ~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~--v~d~~~wkvv~~I~~~G~g-lFi~thP~s~  281 (369)
T PF02239_consen  206 LVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVS--VHDDYAWKVVKTIPTQGGG-LFIKTHPDSR  281 (369)
T ss_dssp             EEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT---STTTBTSEEEEEE-SSSS---EE--TT-S
T ss_pred             EEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccc--cchhhcCeEEEEEECCCCc-ceeecCCCCc
Confidence            776543    355555544 34433222222221 1222222221110  0111245556666655555 7788899999


Q ss_pred             EEEEE----eCCCcEEEEeCCCCceEEEEecc-CCCeEEEEEccCCCEEEEeeCC--CcEEEEeCCCCceeEEee
Q 004214          394 LVCTG----SQDRTACVWRLPDLVSVVTFRGH-KRGIWSVEFSPVDQVVITASGD--KTIKIWSISDGSCLKTFE  461 (768)
Q Consensus       394 ~l~~~----~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~t~~~d--~~i~iwd~~~~~~~~~~~  461 (768)
                      ++.+.    ...++|.++|..+.+.+..+... ...+..+.|+++|+.+..+..+  +.|.+||..+.+.+..+.
T Consensus       282 ~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  282 YVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             EEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             cEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            99998    44579999999999887777532 2358999999999977665543  369999999999998886

...

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.76  E-value=4.5e-17  Score=159.12  Aligned_cols=209  Identities=17%  Similarity=0.245  Sum_probs=169.5

Q ss_pred             EEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec
Q 004214          299 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA  378 (768)
Q Consensus       299 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  378 (768)
                      .++.++.||.+.+.+ ..++.-.....|.+.+.+-.|+|+|. -|++++.||.|++|.-.++           ...++..
T Consensus        77 ~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrsGM-----------LRStl~Q  143 (737)
T KOG1524|consen   77 TLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRSGM-----------LRSTVVQ  143 (737)
T ss_pred             eEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEeccch-----------HHHHHhh
Confidence            488889999999886 34556667789999999999999987 5899999999999986543           3334455


Q ss_pred             cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeE
Q 004214          379 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK  458 (768)
Q Consensus       379 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~  458 (768)
                      ...+|.|++|.|+.+-++.+ ..+.+.|=.+.....+...+.|.+-|.++.|+|..+++++|++|-..+|||- .|..+.
T Consensus       144 ~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf  221 (737)
T KOG1524|consen  144 NEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLF  221 (737)
T ss_pred             cCceeEEEEECCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccc
Confidence            67889999999987766654 3466777777777777788999999999999999999999999999999996 688888


Q ss_pred             EeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214          459 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       459 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~  535 (768)
                      .-..|..+|++++|.|+ +.++.++. .++++           -....+.|..++||+||..++.|...|.+.+=..
T Consensus       222 ~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~  285 (737)
T KOG1524|consen  222 TSAAEEYAITSVAFNPE-KDYLLWSY-NTARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA  285 (737)
T ss_pred             cCChhccceeeeeeccc-cceeeeee-eeeee-----------cCCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence            88889999999999999 55555543 23331           1234678999999999999999999998866443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.76  E-value=9.6e-16  Score=157.54  Aligned_cols=270  Identities=12%  Similarity=0.190  Sum_probs=176.9

Q ss_pred             EEEEeCCCcEEEEECCC-ce--eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC-CceE--EEeeecccC
Q 004214          255 LAVATNIEQVQVYDLSS-MS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-SRCC--VGVGTGHMG  328 (768)
Q Consensus       255 l~~~~~~~~i~i~d~~~-~~--~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~--~~~~~~~~~  328 (768)
                      +++...++.|.+|++.+ +.  .+..+.. .+....+.  +.++++.+++++..++.|.+|++. ++..  ..... ..+
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~--~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~   80 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMV--ISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPG   80 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEE--ECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCC
Confidence            34446689999999964 32  3344432 23445555  667777755555668999999986 3332  22222 234


Q ss_pred             cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEE
Q 004214          329 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVW  407 (768)
Q Consensus       329 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~  407 (768)
                      ....++++|+++.++++...++.|.+|++.......      ..... ..+.....+++++|+++++++++ .++.|.+|
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~------~~~~~-~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~  153 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV------APIQI-IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLF  153 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC------Cceee-ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEE
Confidence            567899999988555555568999999986321110      01111 11223467788999999886655 56899999


Q ss_pred             eCCCCceEEE-----Ee-ccCCCeEEEEEccCCCEEEEeeC-CCcEEEEeCCC--C--ceeEEeecC------CCcEEEE
Q 004214          408 RLPDLVSVVT-----FR-GHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISD--G--SCLKTFEGH------TSSVLRA  470 (768)
Q Consensus       408 d~~~~~~~~~-----~~-~~~~~v~~v~~s~~~~~l~t~~~-d~~i~iwd~~~--~--~~~~~~~~~------~~~v~~~  470 (768)
                      |+.+...+..     .. ........++|+|+|++++++.. +++|.+|++..  +  +.+..+..+      ......+
T Consensus       154 d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i  233 (330)
T PRK11028        154 TLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADI  233 (330)
T ss_pred             EECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeE
Confidence            9976332211     11 12344678999999999988876 89999999973  3  234444322      1223468


Q ss_pred             EEEeCCCEEEEEeC-CCcEEEEECCCCe----EEEEeccCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 004214          471 SFLTRGAQIVSCGA-DGLVKLWTVRTGE----CIATYDKHEDKIWALAVGKKTEMFATGGS-DALVNLWHDS  536 (768)
Q Consensus       471 ~~s~~~~~l~s~~~-dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~~~~~l~s~~~-dg~v~vw~~~  536 (768)
                      .|+|+|++|+++.. ++.|.+|++.+..    .+..... ......+.++|+|++|+++.. ++.|.+|+++
T Consensus       234 ~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        234 HITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            89999999998865 7899999986533    2233221 124557899999999998775 8999999875

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.76  E-value=9.3e-17  Score=145.26  Aligned_cols=253  Identities=15%  Similarity=0.256  Sum_probs=184.1

Q ss_pred             ceEEEeeeeecCCCEEEEEEeC----CCeEEEEeC--CCceEEEee-ecccCcEEEEEEecCCC----cEEEEEeCCCeE
Q 004214          284 IVLCLDTCALSSGKILIVTGSK----DNSVRLWDS--ESRCCVGVG-TGHMGAVGAVAFSKKLQ----NFLVSGSSDHTI  352 (768)
Q Consensus       284 ~v~~l~~~~~~~~~~~l~~~~~----dg~i~iwd~--~~~~~~~~~-~~~~~~v~~~~~~~~~~----~~l~s~~~dg~i  352 (768)
                      ++.++.|...++.+..++.|+-    .+.|.|..+  .+++.+... ..|.-+++.+.|.|+..    .+|++++  ..+
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L  123 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL  123 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence            4455554444555666787763    355665543  344444322 35888999999999853    3455443  479


Q ss_pred             EEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc---eEEEEeccCCCeEEE
Q 004214          353 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLV---SVVTFRGHKRGIWSV  428 (768)
Q Consensus       353 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~v  428 (768)
                      ++|.+.......... ..........+..+++++.|+. +.+++.+++-|-+..|||++++.   ....+-.|...|..+
T Consensus       124 RlWri~~ee~~~~~~-~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI  202 (364)
T KOG0290|consen  124 RLWRIGDEESRVELQ-SVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI  202 (364)
T ss_pred             EEEeccCcCCceehh-hhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence            999987432211111 1111122345678999999998 77899999999999999999863   355677899999999


Q ss_pred             EEccCC-CEEEEeeCCCcEEEEeCCCCceeEEe---ecCCCcEEEEEEEeC-CCEEEEEeCCC-cEEEEECCC-CeEEEE
Q 004214          429 EFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFLTR-GAQIVSCGADG-LVKLWTVRT-GECIAT  501 (768)
Q Consensus       429 ~~s~~~-~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~-~~~l~s~~~dg-~i~iwd~~~-~~~~~~  501 (768)
                      +|...+ +.+|+.+.||.||+||++..+.-..+   .....+..+++|+++ -+++++-..|. .|.|.|++. ..++.+
T Consensus       203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~  282 (364)
T KOG0290|consen  203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR  282 (364)
T ss_pred             EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence            999865 68899999999999999876533322   223567889999874 56788776655 799999986 468899


Q ss_pred             eccCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcCCHH
Q 004214          502 YDKHEDKIWALAVGKK-TEMFATGGSDALVNLWHDSTAA  539 (768)
Q Consensus       502 ~~~~~~~v~~l~~s~~-~~~l~s~~~dg~v~vw~~~~~~  539 (768)
                      +.+|.+.|++++|.|. ...|+++|.|..+.+||+....
T Consensus       283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~  321 (364)
T KOG0290|consen  283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP  321 (364)
T ss_pred             hhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence            9999999999999995 6689999999999999987643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=1.6e-16  Score=167.52  Aligned_cols=195  Identities=19%  Similarity=0.234  Sum_probs=148.9

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeCCCceEEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccc
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL  370 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  370 (768)
                      |....+. |++++.-..|+|||......+..+. +....|+++.-+-...+++++|..||.|++||.+.....       
T Consensus      1173 WqQ~~G~-Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d------- 1244 (1387)
T KOG1517|consen 1173 WQQQSGH-LLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD------- 1244 (1387)
T ss_pred             hhhhCCe-EEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-------
Confidence            4444555 5555557899999999877766544 455667888777666679999999999999999865322       


Q ss_pred             ceeeEeeccCCC--eEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceE--EEEeccC--C-CeEEEEEccCCCEEEEeeC
Q 004214          371 KAKAVVAAHGKD--INSLAVAPNDS-LVCTGSQDRTACVWRLPDLVSV--VTFRGHK--R-GIWSVEFSPVDQVVITASG  442 (768)
Q Consensus       371 ~~~~~~~~~~~~--i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~--~-~v~~v~~s~~~~~l~t~~~  442 (768)
                      ........|...  |..+.+.++|- .|++|+.||.|++||++.....  ..+..|.  + ..+++..+++..++|+|+.
T Consensus      1245 s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1245 SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred             ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence            245566778777  99999999665 4999999999999999874222  2222232  3 5999999999999999999


Q ss_pred             CCcEEEEeCCCCceeEEeec-------CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC
Q 004214          443 DKTIKIWSISDGSCLKTFEG-------HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG  496 (768)
Q Consensus       443 d~~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  496 (768)
                       +.|+||++ .|+.+..+..       ..+.+.+++|+|..-+|++|+.|.+|.||....+
T Consensus      1325 -q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1325 -QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             -ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence             99999998 4555555442       2356799999999999999999999999987554

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.76  E-value=1.6e-16  Score=149.79  Aligned_cols=236  Identities=21%  Similarity=0.318  Sum_probs=177.0

Q ss_pred             cCCCCEEEEE---eCCCcEEEEECC-Ccee---eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc----
Q 004214          249 GEEEQYLAVA---TNIEQVQVYDLS-SMSC---SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR----  317 (768)
Q Consensus       249 ~~~~~~l~~~---~~~~~i~i~d~~-~~~~---~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----  317 (768)
                      .-+..++|+.   +..|...+.-+. +|+.   .-.+.+|+.+|..++||  |-+...||+|+.|.+|.||.+..+    
T Consensus        41 avNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~--PfnD~vIASgSeD~~v~vW~IPe~~l~~  118 (472)
T KOG0303|consen   41 AVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWC--PFNDCVIASGSEDTKVMVWQIPENGLTR  118 (472)
T ss_pred             ccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccC--ccCCceeecCCCCceEEEEECCCccccc
Confidence            3455666653   233344444332 2322   22467999999999955  445556999999999999997643    


Q ss_pred             ---eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE
Q 004214          318 ---CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL  394 (768)
Q Consensus       318 ---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  394 (768)
                         +++..+.+|...|..++|+|...++|++++.|.+|.+|++..+.          .... ..|.+-|.++.|+.||.+
T Consensus       119 ~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge----------ali~-l~hpd~i~S~sfn~dGs~  187 (472)
T KOG0303|consen  119 DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE----------ALIT-LDHPDMVYSMSFNRDGSL  187 (472)
T ss_pred             CcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc----------eeee-cCCCCeEEEEEeccCCce
Confidence               45677889999999999999999999999999999999998653          2222 339999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEeccCCC-eEEEEEccCCCEEEEee---CCCcEEEEeCCCCc---eeEEeecCCCcE
Q 004214          395 VCTGSQDRTACVWRLPDLVSVVTFRGHKRG-IWSVEFSPVDQVVITAS---GDKTIKIWSISDGS---CLKTFEGHTSSV  467 (768)
Q Consensus       395 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~v~~s~~~~~l~t~~---~d~~i~iwd~~~~~---~~~~~~~~~~~v  467 (768)
                      +++.+.|+.|+|||.++++.+..-.+|.+. -..+.|-.+|.++-||.   .+.++-+||..+-+   ....+. ..+.|
T Consensus       188 l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGv  266 (472)
T KOG0303|consen  188 LCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGV  266 (472)
T ss_pred             eeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCce
Confidence            999999999999999999999988888763 44566777888555553   46889999976543   334444 34556


Q ss_pred             EEEEEEeCCCEEEEEe-CCCcEEEEECCCCeE
Q 004214          468 LRASFLTRGAQIVSCG-ADGLVKLWTVRTGEC  498 (768)
Q Consensus       468 ~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~  498 (768)
                      .---|.+|.+.+..++ .|+.|+.|.+.+..+
T Consensus       267 l~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  267 LLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             EEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence            6566778888776555 599999999876553

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.6e-17  Score=160.67  Aligned_cols=305  Identities=20%  Similarity=0.249  Sum_probs=222.6

Q ss_pred             EEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhccc
Q 004214           67 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR  146 (768)
Q Consensus        67 ~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (768)
                      ...|..|.+.|..+.|...|..|+|++.|..|.+|||..++....+..                                
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S--------------------------------  182 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES--------------------------------  182 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccccc--------------------------------
Confidence            456788999999999999999999999999999999988765544431                                


Q ss_pred             CCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccc
Q 004214          147 RSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK  226 (768)
Q Consensus       147 ~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~  226 (768)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (559)
T KOG1334|consen  183 --------------------------------------------------------------------------------  182 (559)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeEEEeeecccCCceeEEEEec-CCCCEEEEEeCCCcEEEEECCC-cee--eeeeeCCccceEEEeeeeecCCCEEEEE
Q 004214          227 MELILSKRLVGYNEEILDLKFLG-EEEQYLAVATNIEQVQVYDLSS-MSC--SYVLAGHSEIVLCLDTCALSSGKILIVT  302 (768)
Q Consensus       227 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~~~~i~i~d~~~-~~~--~~~~~~~~~~v~~l~~~~~~~~~~~l~~  302 (768)
                                ||...|....|.| .+...+++++.||++++=.+.. +.+  ...+..|.++|.-++  ..|....-|.+
T Consensus       183 ----------GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhkla--v~p~sp~~f~S  250 (559)
T KOG1334|consen  183 ----------GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLA--VEPDSPKPFLS  250 (559)
T ss_pred             ----------ccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceee--ecCCCCCcccc
Confidence                      1122222222322 2334566666677777655432 222  345677899998887  66666667999


Q ss_pred             EeCCCeEEEEeCCCceEEEeee---cccC---cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccc--cccceee
Q 004214          303 GSKDNSVRLWDSESRCCVGVGT---GHMG---AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP--MNLKAKA  374 (768)
Q Consensus       303 ~~~dg~i~iwd~~~~~~~~~~~---~~~~---~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~  374 (768)
                      ++.|+.+.-+|++.+.+...+.   .+..   ...+++..|...+.+++++.|-.+++||.+.........  ....+..
T Consensus       251 ~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h  330 (559)
T KOG1334|consen  251 CGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH  330 (559)
T ss_pred             cccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc
Confidence            9999999999998765443332   2333   567889999888899999999999999988654321111  1111222


Q ss_pred             EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC--C----------ceE-EEEeccCC--CeEEEE-EccCCCEEE
Q 004214          375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD--L----------VSV-VTFRGHKR--GIWSVE-FSPVDQVVI  438 (768)
Q Consensus       375 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~--~----------~~~-~~~~~~~~--~v~~v~-~s~~~~~l~  438 (768)
                      ........|++++|+.++.-+.++-.|-.|++|.-.-  +          ..+ ..++||..  .|..+- |-|...+++
T Consensus       331 l~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVv  410 (559)
T KOG1334|consen  331 LVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVV  410 (559)
T ss_pred             ccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEE
Confidence            2223456799999998888888888888999995421  2          122 23778865  355554 567889999


Q ss_pred             EeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214          439 TASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       439 t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  495 (768)
                      +|+.-|.|.||+-.+++.++-+++...-|+|+.=+|.-..||++|-|..|+||...+
T Consensus       411 SGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  411 SGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             ecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence            999999999999999999999998888999999999999999999999999997543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.75  E-value=9.2e-15  Score=149.06  Aligned_cols=324  Identities=15%  Similarity=0.089  Sum_probs=202.1

Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecC
Q 004214           46 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP  125 (768)
Q Consensus        46 ~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~  125 (768)
                      ++++-..+|.|.|.|..+.+.+.++......-..+.|+|||+++++++.||.|.++|+.+++.+.+++.......+++++
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~   87 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP   87 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence            45667778999999999999999998765555567899999999999999999999999999888887666555555555


Q ss_pred             CCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCce
Q 004214          126 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL  205 (768)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  205 (768)
                      +|.                                                                             
T Consensus        88 DG~-----------------------------------------------------------------------------   90 (369)
T PF02239_consen   88 DGK-----------------------------------------------------------------------------   90 (369)
T ss_dssp             TTT-----------------------------------------------------------------------------
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            443                                                                             


Q ss_pred             EEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEE-EeCCCcEEEEECCCceeeeeeeCC---
Q 004214          206 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV-ATNIEQVQVYDLSSMSCSYVLAGH---  281 (768)
Q Consensus       206 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~~~~i~i~d~~~~~~~~~~~~~---  281 (768)
                                                                      ++++ ....+.+.++|..+.+.++.+...   
T Consensus        91 ------------------------------------------------~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~  122 (369)
T PF02239_consen   91 ------------------------------------------------YVYVANYEPGTVSVIDAETLEPVKTIPTGGMP  122 (369)
T ss_dssp             ------------------------------------------------EEEEEEEETTEEEEEETTT--EEEEEE--EE-
T ss_pred             ------------------------------------------------EEEEEecCCCceeEeccccccceeeccccccc
Confidence                                                            3332 233566777777776666655432   


Q ss_pred             ----ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE-eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEe
Q 004214          282 ----SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG-VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS  356 (768)
Q Consensus       282 ----~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  356 (768)
                          ...+..+.  ..+....++++--..+.|.+.|......+. .............|+|+++.++++...+..|-++|
T Consensus       123 ~~~~~~Rv~aIv--~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD  200 (369)
T PF02239_consen  123 VDGPESRVAAIV--ASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVID  200 (369)
T ss_dssp             TTTS---EEEEE--E-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred             ccccCCCceeEE--ecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEe
Confidence                23344553  445555545555555889888987654332 22223455678899999886667677788999999


Q ss_pred             CCCCCCCCccccccceeeEeeccCCCeEEE-------EE--ccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEE
Q 004214          357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSL-------AV--APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS  427 (768)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~--s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~  427 (768)
                      ............      -...|..+...+       .|  ...+...++.-....+.+||..+.+.+..+.....+ .-
T Consensus       201 ~~~~k~v~~i~~------g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lF  273 (369)
T PF02239_consen  201 TKTGKLVALIDT------GKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LF  273 (369)
T ss_dssp             TTTTEEEEEEE-------SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---
T ss_pred             eccceEEEEeec------cccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ce
Confidence            875421110000      001122222211       12  222333323333346678999999999999987777 78


Q ss_pred             EEEccCCCEEEEe----eCCCcEEEEeCCCCceeEEeecC-CCcEEEEEEEeCCCEEEEEeCC--CcEEEEECCCCeEEE
Q 004214          428 VEFSPVDQVVITA----SGDKTIKIWSISDGSCLKTFEGH-TSSVLRASFLTRGAQIVSCGAD--GLVKLWTVRTGECIA  500 (768)
Q Consensus       428 v~~s~~~~~l~t~----~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d--g~i~iwd~~~~~~~~  500 (768)
                      +..+|+++++.+.    ...++|.++|.++.+.+.++... ...+..+.|+++|+++..+..+  |.|.+||..+.+.+.
T Consensus       274 i~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~  353 (369)
T PF02239_consen  274 IKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK  353 (369)
T ss_dssp             EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred             eecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence            8889999999988    45689999999999888887632 2358899999999977655543  369999999999998


Q ss_pred             Eec
Q 004214          501 TYD  503 (768)
Q Consensus       501 ~~~  503 (768)
                      .+.
T Consensus       354 ~i~  356 (369)
T PF02239_consen  354 RIP  356 (369)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            886

...

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.75  E-value=1e-14  Score=137.01  Aligned_cols=270  Identities=17%  Similarity=0.207  Sum_probs=187.1

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC--CeEEEEeCCCceEEEeeeccc
Q 004214          250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHM  327 (768)
Q Consensus       250 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~  327 (768)
                      .+...|.+|+.+| .++|+...........  .+.+.-+...|++ .  +++..+.+  ..++++++..+..+..+. ..
T Consensus        15 qd~~~lsvGs~~G-yk~~~~~~~~k~~~~~--~~~~~IvEmLFSS-S--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fp   87 (391)
T KOG2110|consen   15 QDSTLLSVGSKDG-YKIFSCSPFEKCFSKD--TEGVSIVEMLFSS-S--LVAIVSIKQPRKLKVVHFKKKTTICEIF-FP   87 (391)
T ss_pred             cceeEEEccCCCc-eeEEecCchHHhhccc--CCCeEEEEeeccc-c--eeEEEecCCCceEEEEEcccCceEEEEe-cC
Confidence            3555666676654 4667766544322211  1222222211332 2  34444333  469999999888777665 45


Q ss_pred             CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe--CCCcEE
Q 004214          328 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS--QDRTAC  405 (768)
Q Consensus       328 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~  405 (768)
                      .+|.++.++.+   .|+++-.+. |.+||++....       .........+...+.++++++.+.++|.-+  ..|.|.
T Consensus        88 t~IL~VrmNr~---RLvV~Lee~-IyIydI~~Mkl-------LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~  156 (391)
T KOG2110|consen   88 TSILAVRMNRK---RLVVCLEES-IYIYDIKDMKL-------LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV  156 (391)
T ss_pred             CceEEEEEccc---eEEEEEccc-EEEEeccccee-------ehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence            67889999876   456555544 99999986531       112222234555677777777777888643  468999


Q ss_pred             EEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCc-EEEEeCCCCceeEEeecC--CCcEEEEEEEeCCCEEEEE
Q 004214          406 VWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT-IKIWSISDGSCLKTFEGH--TSSVLRASFLTRGAQIVSC  482 (768)
Q Consensus       406 i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~-i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~  482 (768)
                      +||+.+.+++..+..|.+++.+++|+++|.+|||++..|+ ||||.+.+|+.+..|+..  ...|.+++|+|++++|++.
T Consensus       157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s  236 (391)
T KOG2110|consen  157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS  236 (391)
T ss_pred             EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence            9999999999999999999999999999999999999987 699999999999999743  3467899999999999999


Q ss_pred             eCCCcEEEEECCCCeE-------------------------------------EEEeccCCC---cEEEEEEcCCCCEEE
Q 004214          483 GADGLVKLWTVRTGEC-------------------------------------IATYDKHED---KIWALAVGKKTEMFA  522 (768)
Q Consensus       483 ~~dg~i~iwd~~~~~~-------------------------------------~~~~~~~~~---~v~~l~~s~~~~~l~  522 (768)
                      +..++|+||.+..-..                                     ..+.....+   .+..+.-.+...++.
T Consensus       237 S~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~  316 (391)
T KOG2110|consen  237 SNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVL  316 (391)
T ss_pred             cCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEE
Confidence            9999999998753210                                     000000111   233333335778999


Q ss_pred             EEeCCCcEEEEEcCC
Q 004214          523 TGGSDALVNLWHDST  537 (768)
Q Consensus       523 s~~~dg~v~vw~~~~  537 (768)
                      .++.||.++.|.+..
T Consensus       317 vas~dG~~y~y~l~~  331 (391)
T KOG2110|consen  317 VASYDGHLYSYRLPP  331 (391)
T ss_pred             EEEcCCeEEEEEcCC
Confidence            999999999999875

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=9.3e-15  Score=147.86  Aligned_cols=572  Identities=16%  Similarity=0.157  Sum_probs=331.0

Q ss_pred             EEEeecCCCcEEEEECCCCE---------------EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCee
Q 004214            2 FALLEGADRKVLVWDVDGGF---------------CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC   66 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~---------------~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~   66 (768)
                      |+|+||.||.++|..+.+..               .-++|.||.+.|..+.|+.+.+.  |-|...+|.|.||-+-.|.-
T Consensus        28 yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK--LTtSDt~GlIiVWmlykgsW  105 (1189)
T KOG2041|consen   28 YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK--LTTSDTSGLIIVWMLYKGSW  105 (1189)
T ss_pred             eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc--ccccCCCceEEEEeeecccH
Confidence            79999999999999885421               22578899999999999987776  99999999999999988765


Q ss_pred             EEEec--CccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhc
Q 004214           67 VATLD--KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKK  144 (768)
Q Consensus        67 ~~~l~--~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (768)
                      ...+.  ...+.|.+|+|+.||..+..+-.||.|.|=.++..+.-..--.......+.++++..                
T Consensus       106 ~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~----------------  169 (1189)
T KOG2041|consen  106 CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLE----------------  169 (1189)
T ss_pred             HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHH----------------
Confidence            44432  245679999999999999999999999887776544322111112233455555543                


Q ss_pred             ccCCcceEEEEeeCCcEEEEEEcCCceeeeecC-CceeecccccCcccce--------eEEEEccCCCceEEEEecCeEE
Q 004214          145 KRRSLEIHFITVGERGIVRMWNADSACLYEQKS-SDVTISFEMDDSKRGF--------TAATVLPSNQGLLCVTADQQLL  215 (768)
Q Consensus       145 ~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~dg~i~  215 (768)
                             .++.+-..|...++|..+.-...... .....+.........+        ......|+...+++...+|.+.
T Consensus       170 -------~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q  242 (1189)
T KOG2041|consen  170 -------QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ  242 (1189)
T ss_pred             -------HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence                   22333445667777766551100000 0000000000000001        1112346778888899999999


Q ss_pred             EEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCC---------CcEEEEECCCceeeeeeeCCccceE
Q 004214          216 LYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI---------EQVQVYDLSSMSCSYVLAGHSEIVL  286 (768)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~---------~~i~i~d~~~~~~~~~~~~~~~~v~  286 (768)
                      +......+.+..        ....-.+....|++ ++..||+++.+         +.|.+|. .-|..+..++.....|+
T Consensus       243 iMR~eND~~Pvv--------~dtgm~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It  312 (1189)
T KOG2041|consen  243 IMRSENDPEPVV--------VDTGMKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCIT  312 (1189)
T ss_pred             hhhhcCCCCCeE--------EecccEeecceecC-CCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceee
Confidence            887766554321        11123567778874 77888887764         2444444 34566667777778888


Q ss_pred             EEeeeeecCCCEEEEEEeCCCeEEEEeCCC--------ceEEEeeecccCcEEEEEEe---------------------c
Q 004214          287 CLDTCALSSGKILIVTGSKDNSVRLWDSES--------RCCVGVGTGHMGAVGAVAFS---------------------K  337 (768)
Q Consensus       287 ~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~~---------------------~  337 (768)
                      +++  |-..+-. ++.+ -|+.|.+=+++.        ...+........+-.++.|-                     .
T Consensus       313 ~ls--WEg~gLr-iA~A-vdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~  388 (1189)
T KOG2041|consen  313 GLS--WEGTGLR-IAIA-VDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYR  388 (1189)
T ss_pred             eeE--EcCCceE-EEEE-ecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheec
Confidence            885  4333332 4433 366666655443        22333333333333343332                     2


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE-------eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214          338 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV-------VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP  410 (768)
Q Consensus       338 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  410 (768)
                      + ...|+.-..+|.+.-++.-...  .    ..-....       +...-..|.-.-..-++..++.++.+ .+.+|...
T Consensus       389 e-hCvL~~~~d~~~i~e~s~le~~--~----~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~  460 (1189)
T KOG2041|consen  389 E-HCVLINRQDDGVIPEYSTLENR--S----RVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYV  460 (1189)
T ss_pred             c-cEEEEeccccCCCcchhhhhcc--c----ceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEe
Confidence            2 1122233333333322110000  0    0000000       00001122222233366677777765 46777643


Q ss_pred             CCc--------------------------------eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeE
Q 004214          411 DLV--------------------------------SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK  458 (768)
Q Consensus       411 ~~~--------------------------------~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~  458 (768)
                      ..+                                ...++.|...+|.+++.+  .++|..+-..|.|.-|.+.+.....
T Consensus       461 ~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n  538 (1189)
T KOG2041|consen  461 LPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTN  538 (1189)
T ss_pred             ccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeee
Confidence            211                                013444567788888887  7899999999999999998887776


Q ss_pred             EeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC---CCeEEE-EeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214          459 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR---TGECIA-TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  534 (768)
Q Consensus       459 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~---~~~~~~-~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~  534 (768)
                      ... -+..+.++++.-+...++.-..-|.+.+.|+.   +|..+. .+......||++.|..|...|++-.....+.|++
T Consensus       539 ~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifr  617 (1189)
T KOG2041|consen  539 SYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFR  617 (1189)
T ss_pred             ccc-cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEec
Confidence            665 56778899999888899988888999998876   344444 3344556799999998877666665555566665


Q ss_pred             cCCHHHHH--------------------HHHHHHH---------HHHHhhhHHHHhhcccchHHHHHHHhhcCCchhHHH
Q 004214          535 DSTAAERE--------------------EAFRKEE---------EAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFE  585 (768)
Q Consensus       535 ~~~~~~~~--------------------~~~~~~~---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  585 (768)
                      -+.+++..                    +.....+         -++...+...+++......+|.+..-...+| +++.
T Consensus       618 gndpeEp~s~sGyIc~FedLeitsVlld~Il~~pE~pnk~~ii~~~ikslrD~~~Lve~vgledA~qfiEdnPHp-rLWr  696 (1189)
T KOG2041|consen  618 GNDPEEPSSVSGYICLFEDLEITSVLLDKILLTPENPNKTCIIEVMIKSLRDVMNLVEAVGLEDAIQFIEDNPHP-RLWR  696 (1189)
T ss_pred             CcCccccccccceEEEeeceEEEEEEHhhHhcCcCCCCcceEEEEEehhhhhHHHHHHHhchHHHHHHHhcCCch-HHHH
Confidence            54433221                    1111100         0122234556667777777888766655555 4555


Q ss_pred             HHHHHHhchhhHHHHHHHHhhcCHHHHHHHHHHHHHHhc
Q 004214          586 LFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNT  624 (768)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~  624 (768)
                      ++....-.+..-...+.+.-++....-.+|.++|+....
T Consensus       697 llAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s  735 (1189)
T KOG2041|consen  697 LLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHS  735 (1189)
T ss_pred             HHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhh
Confidence            554332222222245556655555555566655554443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.74  E-value=2.5e-15  Score=150.01  Aligned_cols=190  Identities=22%  Similarity=0.290  Sum_probs=155.0

Q ss_pred             CCCEEEEEEeCCCeEEEEeCCCceEEEeeecc---cCcEEEEEEe------c-------------CCCcEEEEEeCCCeE
Q 004214          295 SGKILIVTGSKDNSVRLWDSESRCCVGVGTGH---MGAVGAVAFS------K-------------KLQNFLVSGSSDHTI  352 (768)
Q Consensus       295 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~------~-------------~~~~~l~s~~~dg~i  352 (768)
                      +...++|....||.+++|+...++....+...   ++..++..|.      |             .+...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            33446999999999999999998877766532   2333444442      2             123478889999999


Q ss_pred             EEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEcc
Q 004214          353 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP  432 (768)
Q Consensus       353 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~  432 (768)
                      .+|++..+        ..........|...|+++.++.+-..|.+++.|+.+..|+..+...++...+....+.+++++|
T Consensus        83 ~~ys~~~g--------~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~  154 (541)
T KOG4547|consen   83 LLYSVAGG--------EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP  154 (541)
T ss_pred             EEEEecCC--------eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC
Confidence            99998865        3334444467999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeC-----CCEEEEEeC-CCcEEEEECC
Q 004214          433 VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR-----GAQIVSCGA-DGLVKLWTVR  494 (768)
Q Consensus       433 ~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~s~~~-dg~i~iwd~~  494 (768)
                      ||..+++|+  ++|++||+++++.+.+|.||.++|.++.|..+     |.+++++.. +..+.+|-+.
T Consensus       155 D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  155 DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            999999988  78999999999999999999999999999887     677766543 5567777654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.74  E-value=5.6e-16  Score=166.16  Aligned_cols=362  Identities=16%  Similarity=0.173  Sum_probs=215.6

Q ss_pred             EECCCCeeEEEecCccceeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCcccccccc
Q 004214           59 WDLLAKKCVATLDKHFSRVTSMAITSDG-STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSY  137 (768)
Q Consensus        59 Wd~~~~~~~~~l~~h~~~V~~l~fs~d~-~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  137 (768)
                      |++ .|..+..+..|+..|..++.++.. .+++|||.||+|++|+...-..-.                           
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~--------------------------- 1085 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG--------------------------- 1085 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc---------------------------
Confidence            665 788999999999999999988755 999999999999999986532110                           


Q ss_pred             chhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEE
Q 004214          138 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY  217 (768)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~  217 (768)
                                         +.-.....|+..+                     ..+..+...+.++.+++++.||.+.+.
T Consensus      1086 -------------------~s~rS~ltys~~~---------------------sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1086 -------------------GSARSELTYSPEG---------------------SRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred             -------------------ceeeeeEEEeccC---------------------CceEEEEeccCCCeEEEEcCCCeEEEE
Confidence                               0000111121111                     233455566777777777788888777


Q ss_pred             eeccCcccceeeEEEeeec-ccCCceeEE-EEecCCCC-EEEEEeCCCcEEEEECCCceeeeeee--CCccceEEEeeee
Q 004214          218 TTVEVPEKKMELILSKRLV-GYNEEILDL-KFLGEEEQ-YLAVATNIEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCA  292 (768)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~~-~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~  292 (768)
                      ++.............+... ...+.+.+| +|...... .++.++..+.|..||+........++  ...+.|++++  .
T Consensus      1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~--i 1203 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV--I 1203 (1431)
T ss_pred             EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE--e
Confidence            7766322222222222111 122334443 44444444 78889999999999998877665543  3457788875  6


Q ss_pred             ecCCCEEEEEEeCCCeEEEEeCCCceEEEeee-cccCcEEEEEEecCCC--cEEEEEe--CCCeEEEEeCCCCCCCCccc
Q 004214          293 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQ--NFLVSGS--SDHTIKVWSFDGLSDDAEQP  367 (768)
Q Consensus       293 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~l~s~~--~dg~i~iwd~~~~~~~~~~~  367 (768)
                      .+.+.+ +++|+..|.+.+||++-+.++.... ++..++..+..+|-.+  ...++++  ..+.|.+|++..+.......
T Consensus      1204 dp~~~W-lviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1204 DPWCNW-LVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLW 1282 (1431)
T ss_pred             cCCceE-EEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEE
Confidence            666664 9999999999999999888877654 4557788887776544  4555544  47889999998763221100


Q ss_pred             cc-------cceee--EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceE-EEEeccCCCeEEEEEccCCCEE
Q 004214          368 MN-------LKAKA--VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV-VTFRGHKRGIWSVEFSPVDQVV  437 (768)
Q Consensus       368 ~~-------~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~v~~s~~~~~l  437 (768)
                      ..       .....  ....+.-......+..-+..+.+|+.|..|+.||....+.. ....+..........+. +..+
T Consensus      1283 ~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~-~~~~ 1361 (1431)
T KOG1240|consen 1283 ASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESY-DLST 1361 (1431)
T ss_pred             cCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhc-cccc
Confidence            00       00000  00012222333444445678999999999999998765443 22222222222222222 1222


Q ss_pred             EEeeCCCcEEE-EeCCC-----CceeEE--------eecCCCcEEEEEEEeCC-CEEEEEeCCCcEEEEE
Q 004214          438 ITASGDKTIKI-WSISD-----GSCLKT--------FEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWT  492 (768)
Q Consensus       438 ~t~~~d~~i~i-wd~~~-----~~~~~~--------~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd  492 (768)
                      +.++.--...| .-...     +.....        -..|..+|+++++.... .+|++++.||.|+||.
T Consensus      1362 i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1362 IPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             cCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence            22221100000 00000     001111        12588899999987544 5889999999999993

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.73  E-value=6.5e-16  Score=142.18  Aligned_cols=343  Identities=13%  Similarity=0.124  Sum_probs=225.6

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeC
Q 004214           79 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE  158 (768)
Q Consensus        79 ~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (768)
                      -.+|||+|+|+|+++.- .+.|=|..+.+....+..-..+..+.+..+.                               
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads-------------------------------   60 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADS-------------------------------   60 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccc-------------------------------
Confidence            35799999999999876 7888888887766555444444444443322                               


Q ss_pred             CcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEE-EecCeEEEEeeccCcccceeeEEEeeecc
Q 004214          159 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCV-TADQQLLLYTTVEVPEKKMELILSKRLVG  237 (768)
Q Consensus       159 ~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~~~~~~~~~~~~~~~~~~~~~~~  237 (768)
                                                                  ..++|+ ..++.+.+|++...       .....+..
T Consensus        61 --------------------------------------------~~ilC~~yk~~~vqvwsl~Qp-------ew~ckIde   89 (447)
T KOG4497|consen   61 --------------------------------------------CHILCVAYKDPKVQVWSLVQP-------EWYCKIDE   89 (447)
T ss_pred             --------------------------------------------eeeeeeeeccceEEEEEeecc-------eeEEEecc
Confidence                                                        222222 23345555554422       12233344


Q ss_pred             cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC---eEEEEeC
Q 004214          238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN---SVRLWDS  314 (768)
Q Consensus       238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg---~i~iwd~  314 (768)
                      ....+..++|+|++...|.+..-+-.|.+|.+.+......- -....+..++  +.++++. .+..+.-.   .+.+..-
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~~--f~~dg~f-~ai~sRrDCkdyv~i~~c  165 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGYA--FHPDGQF-CAILSRRDCKDYVQISSC  165 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-ccccCceeEE--ECCCCce-eeeeecccHHHHHHHHhh
Confidence            45677888888877777888888899999999988766432 2233345555  6666665 55554321   1222222


Q ss_pred             CCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE
Q 004214          315 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL  394 (768)
Q Consensus       315 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  394 (768)
                      ..-..+..+...+-..+.+.|+|+|. .+         .+||-.-.           ........+-.+..++|+|.+++
T Consensus       166 ~~W~ll~~f~~dT~DltgieWsPdg~-~l---------aVwd~~Le-----------ykv~aYe~~lG~k~v~wsP~~qf  224 (447)
T KOG4497|consen  166 KAWILLKEFKLDTIDLTGIEWSPDGN-WL---------AVWDNVLE-----------YKVYAYERGLGLKFVEWSPCNQF  224 (447)
T ss_pred             HHHHHHHhcCCCcccccCceECCCCc-EE---------EEecchhh-----------heeeeeeeccceeEEEeccccce
Confidence            23334555566677788999999976 34         35653210           11111223356889999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEE--------------------------------------------------------
Q 004214          395 VCTGSQDRTACVWRLPDLVSVVTF--------------------------------------------------------  418 (768)
Q Consensus       395 l~~~~~dg~i~i~d~~~~~~~~~~--------------------------------------------------------  418 (768)
                      +++|+.|+.+++.+--+.++...+                                                        
T Consensus       225 lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~  304 (447)
T KOG4497|consen  225 LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVK  304 (447)
T ss_pred             EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhccee
Confidence            999999999988653222211110                                                        


Q ss_pred             ----e------ccCCCeEEEEEccCCCEEEEeeC--CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCC
Q 004214          419 ----R------GHKRGIWSVEFSPVDQVVITASG--DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG  486 (768)
Q Consensus       419 ----~------~~~~~v~~v~~s~~~~~l~t~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  486 (768)
                          +      ....++.-++|++|..+++|-..  -+.+-+||++..+....+. ...+|....|.|....|+.+....
T Consensus       305 ~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~s  383 (447)
T KOG4497|consen  305 VHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKS  383 (447)
T ss_pred             eecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCc
Confidence                0      01234667899999999998654  3568999998877666665 667899999999999998888778


Q ss_pred             cEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 004214          487 LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVN  531 (768)
Q Consensus       487 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~  531 (768)
                      .+++|...-..++..-. ..-.|..+.|..+|..++-.+.|....
T Consensus       384 rLY~W~psg~~~V~vP~-~GF~i~~l~W~~~g~~i~l~~kDafc~  427 (447)
T KOG4497|consen  384 RLYFWAPSGPRVVGVPK-KGFNIQKLQWLQPGEFIVLCGKDAFCV  427 (447)
T ss_pred             eEEEEcCCCceEEecCC-CCceeeeEEecCCCcEEEEEcCCceEE
Confidence            89999876655555433 456799999999999999999997543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.73  E-value=2.4e-16  Score=154.16  Aligned_cols=209  Identities=14%  Similarity=0.196  Sum_probs=162.1

Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcE
Q 004214          251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV  330 (768)
Q Consensus       251 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  330 (768)
                      ....++++++||.+.+.+- .++..+....|.+.+.|-.  +.++|.- |++++.||.|++|.- +|....++.....+|
T Consensus        74 ~~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gR--W~~dGtg-Llt~GEDG~iKiWSr-sGMLRStl~Q~~~~v  148 (737)
T KOG1524|consen   74 GSDTLLICSNDGRFVILNK-SARVERSISAHAAAISSGR--WSPDGAG-LLTAGEDGVIKIWSR-SGMLRSTVVQNEESI  148 (737)
T ss_pred             CcceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcc--cCCCCce-eeeecCCceEEEEec-cchHHHHHhhcCcee
Confidence            3446777888888888773 4556667888999999987  7777777 999999999999974 444444455567899


Q ss_pred             EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214          331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP  410 (768)
Q Consensus       331 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  410 (768)
                      .|++|.|+..+.+++.+.  .+.+=.+.          .........+|.+-|.++.|+|..+++++|+.|-..++||..
T Consensus       149 ~c~~W~p~S~~vl~c~g~--h~~IKpL~----------~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~  216 (737)
T KOG1524|consen  149 RCARWAPNSNSIVFCQGG--HISIKPLA----------ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ  216 (737)
T ss_pred             EEEEECCCCCceEEecCC--eEEEeecc----------cccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence            999999998887776654  44443333          112344567899999999999999999999999999999964


Q ss_pred             CCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEE
Q 004214          411 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL  490 (768)
Q Consensus       411 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i  490 (768)
                       |..+..-..|..+|++++|.|+ ..++.++. ++.|+=           ....+.|..++||+||..+++|+..|.+.+
T Consensus       217 -G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  217 -GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             -CcccccCChhccceeeeeeccc-cceeeeee-eeeeec-----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence             5566666779999999999998 77777765 455521           235678999999999999999999997654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.71  E-value=2.4e-14  Score=147.17  Aligned_cols=244  Identities=13%  Similarity=0.205  Sum_probs=155.3

Q ss_pred             eeEEEEecCCCCEEEEE-eCCCcEEEEECCC-cee--eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-
Q 004214          242 ILDLKFLGEEEQYLAVA-TNIEQVQVYDLSS-MSC--SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-  316 (768)
Q Consensus       242 i~~~~~~~~~~~~l~~~-~~~~~i~i~d~~~-~~~--~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-  316 (768)
                      ...+.+++ ++++|+++ ..++.|.+|++.. +..  ..... .......+.  +.++++.++++...++.|.+|++.+ 
T Consensus        37 ~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~--~~~~g~~l~v~~~~~~~v~v~~~~~~  112 (330)
T PRK11028         37 VQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIS--TDHQGRFLFSASYNANCVSVSPLDKD  112 (330)
T ss_pred             CccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEE--ECCCCCEEEEEEcCCCeEEEEEECCC
Confidence            44556654 55565554 4578888898863 322  12221 122334454  7778887555555689999999864 


Q ss_pred             c---eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC
Q 004214          317 R---CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS  393 (768)
Q Consensus       317 ~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  393 (768)
                      +   ..+..+. +.....+++++|+++.++++...++.|.+||+.........    ...............++|+|+|+
T Consensus       113 g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~----~~~~~~~~~g~~p~~~~~~pdg~  187 (330)
T PRK11028        113 GIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ----EPAEVTTVEGAGPRHMVFHPNQQ  187 (330)
T ss_pred             CCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc----CCCceecCCCCCCceEEECCCCC
Confidence            2   2222222 22346778899998866677778899999999752211000    00000011234567899999999


Q ss_pred             EEEEEeC-CCcEEEEeCCC--C--ceEEEEecc------CCCeEEEEEccCCCEEEEeeC-CCcEEEEeCCCCceeEEee
Q 004214          394 LVCTGSQ-DRTACVWRLPD--L--VSVVTFRGH------KRGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCLKTFE  461 (768)
Q Consensus       394 ~l~~~~~-dg~i~i~d~~~--~--~~~~~~~~~------~~~v~~v~~s~~~~~l~t~~~-d~~i~iwd~~~~~~~~~~~  461 (768)
                      +++++.. ++.|.+|++..  +  +.+..+..+      ......+.++|++++++++.. ++.|.+|++.......++.
T Consensus       188 ~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~  267 (330)
T PRK11028        188 YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE  267 (330)
T ss_pred             EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe
Confidence            9988876 89999999973  2  233333322      112346889999999998854 7899999986543222222


Q ss_pred             cCC---CcEEEEEEEeCCCEEEEEeC-CCcEEEEECC
Q 004214          462 GHT---SSVLRASFLTRGAQIVSCGA-DGLVKLWTVR  494 (768)
Q Consensus       462 ~~~---~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~  494 (768)
                      ++.   .....+.|+|+|++|+++.. +++|.+|++.
T Consensus       268 ~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        268 GHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            221   24457899999999998776 8899999874

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.71  E-value=6.8e-16  Score=151.35  Aligned_cols=175  Identities=15%  Similarity=0.209  Sum_probs=140.4

Q ss_pred             EEEEeCCCeEEEEeCCCceEEEeee----cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccc--------
Q 004214          300 IVTGSKDNSVRLWDSESRCCVGVGT----GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP--------  367 (768)
Q Consensus       300 l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------  367 (768)
                      ++.|-..|.|.+.|....+....+.    -....|+++.|-|.+...++++-.+|.+.+||...........        
T Consensus       188 llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~  267 (636)
T KOG2394|consen  188 LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGD  267 (636)
T ss_pred             eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCC
Confidence            7778888999998876532222111    2347899999999989899999999999999864321111100        


Q ss_pred             ----------cccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEE
Q 004214          368 ----------MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV  437 (768)
Q Consensus       368 ----------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  437 (768)
                                ....+..........|+.++|+|||++||+.+.||.++|||+.+.+++..++..-+...|++|||||++|
T Consensus       268 ~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyI  347 (636)
T KOG2394|consen  268 QFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYI  347 (636)
T ss_pred             eeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEE
Confidence                      0011222223344589999999999999999999999999999999888888888899999999999999


Q ss_pred             EEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEe
Q 004214          438 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT  474 (768)
Q Consensus       438 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  474 (768)
                      ++|++|.-|.||.+..++.+..-.+|..+|..++|.|
T Consensus       348 vtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  348 VTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            9999999999999999999999999999999999987

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.2e-14  Score=128.32  Aligned_cols=284  Identities=16%  Similarity=0.168  Sum_probs=188.3

Q ss_pred             eeEEEEccCCCceEEEEecCeEEEEeeccCcccce---eeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 004214          193 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM---ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL  269 (768)
Q Consensus       193 ~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~  269 (768)
                      +...+++|....++++..+|.|.++++........   .........+|+++++.++|.   +.+|++++. |.|+-|..
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~gd-G~V~gw~W   88 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGGD-GLVYGWEW   88 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeeccC-ceEEEeee
Confidence            34456788999999999999999998876543221   122233347899999999997   345666555 99999876


Q ss_pred             CCcee----ee----eeeCCc-----cceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEe
Q 004214          270 SSMSC----SY----VLAGHS-----EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS  336 (768)
Q Consensus       270 ~~~~~----~~----~~~~~~-----~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  336 (768)
                      .....    ..    ..+.|.     ..|.++.  ..|..+. ++.++.|+.++-||+++|+..+.+++|++.|.++.--
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~--ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R  165 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMW--LDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR  165 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeE--eccCCCc-EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeec
Confidence            54322    10    112222     3355553  4455555 5666689999999999999999999999999999884


Q ss_pred             cCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEE
Q 004214          337 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV  416 (768)
Q Consensus       337 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~  416 (768)
                      .... .+++|+.||++++||.++.......................|-+++.+  ..++++|+ ...+.+|.++..++..
T Consensus       166 ~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~  241 (325)
T KOG0649|consen  166 NANG-QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTC  241 (325)
T ss_pred             ccCc-ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceE
Confidence            3323 499999999999999987654332211111111111223445666554  55777765 4679999999998888


Q ss_pred             EEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC-CEEEEEeCCCcEEEE
Q 004214          417 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLW  491 (768)
Q Consensus       417 ~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw  491 (768)
                      .+. -..++..+.|-  ...+++++..+.|.-|.+ +|.............++..|+... ++|-.++....+.|+
T Consensus       242 vfp-ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  242 VFP-IPARVHLVDFV--DDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             EEe-cccceeEeeee--cceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            776 45678888887  456777887788999987 455555555444445555554332 344444555555554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.70  E-value=3.8e-15  Score=159.88  Aligned_cols=365  Identities=17%  Similarity=0.181  Sum_probs=213.6

Q ss_pred             EECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC-------eeEEEecCccceeEEEEEcCCCC
Q 004214           15 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-------KCVATLDKHFSRVTSMAITSDGS   87 (768)
Q Consensus        15 wd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~-------~~~~~l~~h~~~V~~l~fs~d~~   87 (768)
                      |++ .|..+..+..|...|..++.++.. ..+++|||.||+|++||...-       +...++....+.+.++.+.+.++
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~-~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEH-TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCC-CceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence            444 467799999999999999998764 134999999999999998531       22334444567899999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEc
Q 004214           88 TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA  167 (768)
Q Consensus        88 ~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~  167 (768)
                      .+|.++.||.|++.++.-....+.....      ...++.........-    . ..........++.+...+.+..||+
T Consensus      1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~------~ri~n~~~~g~vv~m----~-a~~~~~~S~~lvy~T~~~~iv~~D~ 1180 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQ------VRIPNLKKDGVVVSM----H-AFTAIVQSHVLVYATDLSRIVSWDT 1180 (1431)
T ss_pred             eEEEEcCCCeEEEEEccccccccceeee------eecccccCCCceEEe----e-cccccccceeEEEEEeccceEEecc
Confidence            9999999999999998763211111100      000000000000000    0 0000011136777888899999998


Q ss_pred             CCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEE
Q 004214          168 DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKF  247 (768)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  247 (768)
                      .......        ........+.++..+..|.++.++.|+..|.+.+|++.-.      .+...-..++..++..+..
T Consensus      1181 r~~~~~w--------~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~------~~i~sw~~P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1181 RMRHDAW--------RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR------VPILSWEHPARAPIRHVWL 1246 (1431)
T ss_pred             hhhhhHH--------hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC------ceeecccCcccCCcceEEe
Confidence            8772221        1222333477889999999999999999999999998743      2233333344566666655


Q ss_pred             ecCCC--CEEEEEe--CCCcEEEEECCCceeeeeeeCC-c---------------cceEEEeeeeecCCCEEEEEEeCCC
Q 004214          248 LGEEE--QYLAVAT--NIEQVQVYDLSSMSCSYVLAGH-S---------------EIVLCLDTCALSSGKILIVTGSKDN  307 (768)
Q Consensus       248 ~~~~~--~~l~~~~--~~~~i~i~d~~~~~~~~~~~~~-~---------------~~v~~l~~~~~~~~~~~l~~~~~dg  307 (768)
                      .+..+  ...++++  ..+.|.+|++.++.+...+... .               ..-.+...|....++.++.+|+.|.
T Consensus      1247 ~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~ 1326 (1431)
T KOG1240|consen 1247 CPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDM 1326 (1431)
T ss_pred             eccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCcc
Confidence            44322  4444443  5789999999999777665332 0               1111122233444555699999999


Q ss_pred             eEEEEeCCCceEEE-eeecccCcEEEEEEecCCCcEEEEEeCCCeEEE-EeCCCCCC--C-CccccccceeeEeeccCCC
Q 004214          308 SVRLWDSESRCCVG-VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKV-WSFDGLSD--D-AEQPMNLKAKAVVAAHGKD  382 (768)
Q Consensus       308 ~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i-wd~~~~~~--~-~~~~~~~~~~~~~~~~~~~  382 (768)
                      .|+.||........ ...+..........+.+-  -++.++.--...+ .....+..  . ...............|...
T Consensus      1327 kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~--~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~ 1404 (1431)
T KOG1240|consen 1327 KIRKWDPTRPEISSYAVPGPSTSYSTNSESYDL--STIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDP 1404 (1431)
T ss_pred             ceeeccCCCcccccccccCccccccccchhccc--cccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccch
Confidence            99999987654431 111221122222222110  1222221100000 00000000  0 0000111122223458889


Q ss_pred             eEEEEEccC-CCEEEEEeCCCcEEEEe
Q 004214          383 INSLAVAPN-DSLVCTGSQDRTACVWR  408 (768)
Q Consensus       383 i~~~~~s~~-~~~l~~~~~dg~i~i~d  408 (768)
                      |+++++... ..++++++.||.|++|.
T Consensus      1405 Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1405 ITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             hhhhhhhccCccEEEEecCCCeeeecC
Confidence            999988764 46899999999999993

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.70  E-value=1.1e-14  Score=136.73  Aligned_cols=227  Identities=11%  Similarity=0.216  Sum_probs=165.3

Q ss_pred             cCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC--CeEEEEeCCCCCCCCccccccc
Q 004214          294 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLK  371 (768)
Q Consensus       294 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~  371 (768)
                      ..+..+|..|+.|| .++|+................|--+-|+..   +++..+.+  +.++++++...           
T Consensus        14 Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~-----------   78 (391)
T KOG2110|consen   14 NQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKK-----------   78 (391)
T ss_pred             ccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccC-----------
Confidence            34445577788877 466766543332222222233445555543   55555544  34778877632           


Q ss_pred             eeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec---cCCCeEEEEEccCCCEEEEee--CCCcE
Q 004214          372 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKRGIWSVEFSPVDQVVITAS--GDKTI  446 (768)
Q Consensus       372 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~v~~s~~~~~l~t~~--~d~~i  446 (768)
                      ...........|.++.++.+  .|++.-.+ .|+|||+++.+.+.++..   +..++.++.+++.+.++|--+  ..|.|
T Consensus        79 ~~ICe~~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV  155 (391)
T KOG2110|consen   79 TTICEIFFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV  155 (391)
T ss_pred             ceEEEEecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence            11112234567888888654  56665554 499999999999988764   344566666666667887533  46899


Q ss_pred             EEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCc-EEEEECCCCeEEEEeccC--CCcEEEEEEcCCCCEEEE
Q 004214          447 KIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL-VKLWTVRTGECIATYDKH--EDKIWALAVGKKTEMFAT  523 (768)
Q Consensus       447 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~--~~~v~~l~~s~~~~~l~s  523 (768)
                      .+||+.+-+++..+..|.+++-+++|+++|.+||+++..|+ ||||.+.+|+.+..|+.-  ...|.+++|+|++++|++
T Consensus       156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~  235 (391)
T KOG2110|consen  156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA  235 (391)
T ss_pred             EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence            99999999999999999999999999999999999999995 799999999999998743  345889999999999999


Q ss_pred             EeCCCcEEEEEcCCH
Q 004214          524 GGSDALVNLWHDSTA  538 (768)
Q Consensus       524 ~~~dg~v~vw~~~~~  538 (768)
                      .|+.++|++|++...
T Consensus       236 sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  236 SSNTETVHIFKLEKV  250 (391)
T ss_pred             ecCCCeEEEEEeccc
Confidence            999999999998764

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.4e-14  Score=148.15  Aligned_cols=433  Identities=14%  Similarity=0.122  Sum_probs=272.4

Q ss_pred             CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCC------------CEEEEEeCCC
Q 004214           29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDG------------STLISAGRDK   96 (768)
Q Consensus        29 h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~------------~~L~s~~~dg   96 (768)
                      |...-.++.|+|.|-   +|-|+ ...|.|-|..+-+.++.+..|...|+.+.|.|-.            -.|+++...|
T Consensus        14 ~~sN~~A~Dw~~~GL---iAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G   89 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSGL---IAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG   89 (1062)
T ss_pred             CcccccccccCccce---EEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence            444567888999752   45444 5669999999999999999999999999998731            2467777889


Q ss_pred             eEEEEECCCCeeeeeeecc-eeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeee
Q 004214           97 VVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ  175 (768)
Q Consensus        97 ~i~vWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~  175 (768)
                      .|.+||...+..+..+..+ .++..++|.+....                   ....+++......+.+|+..+|..+..
T Consensus        90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~-------------------Srd~LlaIh~ss~lvLwntdtG~k~Wk  150 (1062)
T KOG1912|consen   90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDD-------------------SRDVLLAIHGSSTLVLWNTDTGEKFWK  150 (1062)
T ss_pred             cEEEEEehhhhhhhhhcCCCcchhheeeeeccCc-------------------chheeEEecCCcEEEEEEccCCceeec
Confidence            9999999998877777654 35777887765431                   123677777888999999999966654


Q ss_pred             cCCceeecccccCcccceeEEEEccCCCce-EEEEecCeEEEEeeccCcccce---eeEEEee--e-----------ccc
Q 004214          176 KSSDVTISFEMDDSKRGFTAATVLPSNQGL-LCVTADQQLLLYTTVEVPEKKM---ELILSKR--L-----------VGY  238 (768)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~~~~~~~~~~~~~---~~~~~~~--~-----------~~~  238 (768)
                      +....          ....+..+.|...+- ...+..|.+.+-+.....++..   .+.+...  -           ..+
T Consensus       151 ~~ys~----------~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~  220 (1062)
T KOG1912|consen  151 YDYSH----------EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNST  220 (1062)
T ss_pred             cccCC----------cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccc
Confidence            43321          223345555655443 4444556655554433322211   1111111  0           001


Q ss_pred             CCce---------eEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214          239 NEEI---------LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV  309 (768)
Q Consensus       239 ~~~i---------~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i  309 (768)
                      ...-         ..++|+|.-.+.+..... ..+.++|++-..++....-..+.+.-+++...+... .|+++..||.+
T Consensus       221 ts~~~sa~fity~a~faf~p~~rn~lfi~~p-rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd-~LfclH~nG~l  298 (1062)
T KOG1912|consen  221 TSTPASAYFITYCAQFAFSPHWRNILFITFP-RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRD-ALFCLHSNGRL  298 (1062)
T ss_pred             cCCCcchhHHHHHHhhhcChhhhceEEEEec-cceEEEcchhhceeEEEEeccCCcceeEeccCCCcc-eEEEEecCCeE
Confidence            1111         123455555555555444 889999999888888877777766666633444444 48899999999


Q ss_pred             EEEeCCC----------------ceEEEeeec-ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCc-------
Q 004214          310 RLWDSES----------------RCCVGVGTG-HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE-------  365 (768)
Q Consensus       310 ~iwd~~~----------------~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------  365 (768)
                      .+|--+.                +.....+.. ..-........|..++.++.--.+|.+.+|.+.++.....       
T Consensus       299 tirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~ie  378 (1062)
T KOG1912|consen  299 TIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIE  378 (1062)
T ss_pred             EEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccc
Confidence            9996433                111111110 0111122223343333444445677788888874421110       


Q ss_pred             --cccc------------cceeeEeeccCCCeEEEEEcc-----------CC-------CEEEEEeCCCcEEEEeCCCCc
Q 004214          366 --QPMN------------LKAKAVVAAHGKDINSLAVAP-----------ND-------SLVCTGSQDRTACVWRLPDLV  413 (768)
Q Consensus       366 --~~~~------------~~~~~~~~~~~~~i~~~~~s~-----------~~-------~~l~~~~~dg~i~i~d~~~~~  413 (768)
                        .++.            .........|....++....|           .+       .++|.|+..|+|.++|+.++.
T Consensus       379 l~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~  458 (1062)
T KOG1912|consen  379 LVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNA  458 (1062)
T ss_pred             ccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchh
Confidence              0000            001111123455555544433           12       368999999999999999999


Q ss_pred             eEEEEeccCCCeEEEEEccCCCEEEEe---------eCCCcEEEEeCCCCcee--EEee-cCCCcEEEEEEEeCCCEEEE
Q 004214          414 SVVTFRGHKRGIWSVEFSPVDQVVITA---------SGDKTIKIWSISDGSCL--KTFE-GHTSSVLRASFLTRGAQIVS  481 (768)
Q Consensus       414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~---------~~d~~i~iwd~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~s  481 (768)
                      ....+..|...|.++.|-....++-.+         +.-+.+.+-|+++|...  +-+. ....+|..+..|..|+||+.
T Consensus       459 v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai  538 (1062)
T KOG1912|consen  459 VAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAI  538 (1062)
T ss_pred             hhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEE
Confidence            999999999999999998765544322         22345778899988543  2223 34578999999999999999


Q ss_pred             EeCCCcEEEEECCCC
Q 004214          482 CGADGLVKLWTVRTG  496 (768)
Q Consensus       482 ~~~dg~i~iwd~~~~  496 (768)
                      .-.|.-+-+||+++.
T Consensus       539 ~Fr~~plEiwd~kt~  553 (1062)
T KOG1912|consen  539 LFRREPLEIWDLKTL  553 (1062)
T ss_pred             EecccchHHHhhccc
Confidence            999999999998653

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.70  E-value=6.9e-14  Score=128.88  Aligned_cols=278  Identities=19%  Similarity=0.255  Sum_probs=183.9

Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC------CeEEEEeCC
Q 004214          242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD------NSVRLWDSE  315 (768)
Q Consensus       242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d------g~i~iwd~~  315 (768)
                      ..+++|. .+...+++|+. .-.++|+.+..+.......+...+.-+.  ..-..+.+.+.|+.+      +.|.|||-.
T Consensus         8 ~lsvs~N-QD~ScFava~~-~Gfriyn~~P~ke~~~r~~~~~G~~~ve--MLfR~N~laLVGGg~~pky~pNkviIWDD~   83 (346)
T KOG2111|consen    8 TLSVSFN-QDHSCFAVATD-TGFRIYNCDPFKESASRQFIDGGFKIVE--MLFRSNYLALVGGGSRPKYPPNKVIIWDDL   83 (346)
T ss_pred             eeEEEEc-cCCceEEEEec-CceEEEecCchhhhhhhccccCchhhhh--HhhhhceEEEecCCCCCCCCCceEEEEecc
Confidence            3446665 46677888877 5578999877544333332222221111  111223334455443      579999977


Q ss_pred             CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE
Q 004214          316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV  395 (768)
Q Consensus       316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  395 (768)
                      ...++..+. ...+|.++.+.++   .+++. ..+.|.+|.+.....      .. ........+....+++-..+..+|
T Consensus        84 k~~~i~el~-f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k------~l-~~~et~~NPkGlC~~~~~~~k~~L  151 (346)
T KOG2111|consen   84 KERCIIELS-FNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPK------LL-HVIETRSNPKGLCSLCPTSNKSLL  151 (346)
T ss_pred             cCcEEEEEE-eccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChh------he-eeeecccCCCceEeecCCCCceEE
Confidence            777776665 5688999999987   34444 457899999874211      11 111111222333333333344455


Q ss_pred             EE-EeCCCcEEEEeCCCCce--EEEEeccCCCeEEEEEccCCCEEEEeeCCCc-EEEEeCCCCceeEEeec--CCCcEEE
Q 004214          396 CT-GSQDRTACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQVVITASGDKT-IKIWSISDGSCLKTFEG--HTSSVLR  469 (768)
Q Consensus       396 ~~-~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~-i~iwd~~~~~~~~~~~~--~~~~v~~  469 (768)
                      |. |-.-|.|.|-|+...+.  ...+..|...|.|++.+-+|.++||+|..|+ |||||..+|+.+..++.  ....|.+
T Consensus       152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~  231 (346)
T KOG2111|consen  152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYC  231 (346)
T ss_pred             EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence            54 34568999999976655  5778899999999999999999999999997 79999999999999873  3457999


Q ss_pred             EEEEeCCCEEEEEeCCCcEEEEECCCCe---E---------------------EEEeccCCCcEEEEEEcCCCCEEEEEe
Q 004214          470 ASFLTRGAQIVSCGADGLVKLWTVRTGE---C---------------------IATYDKHEDKIWALAVGKKTEMFATGG  525 (768)
Q Consensus       470 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~---~---------------------~~~~~~~~~~v~~l~~s~~~~~l~s~~  525 (768)
                      ++|||++.+|++++.-|+|+||.++...   .                     +..+.-..++..-++|-.+.+.++..+
T Consensus       232 iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~  311 (346)
T KOG2111|consen  232 IAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAIC  311 (346)
T ss_pred             EEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEE
Confidence            9999999999999999999999886422   1                     111122334455567776666777777


Q ss_pred             CCCcEEEEEc
Q 004214          526 SDALVNLWHD  535 (768)
Q Consensus       526 ~dg~v~vw~~  535 (768)
                      .||.-+-+.+
T Consensus       312 ~Dgsy~k~~f  321 (346)
T KOG2111|consen  312 ADGSYYKFKF  321 (346)
T ss_pred             eCCcEEEEEe
Confidence            7887544443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=2.7e-15  Score=158.83  Aligned_cols=235  Identities=16%  Similarity=0.188  Sum_probs=164.7

Q ss_pred             CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC---CeEEEEeCCCceE--EEeeecccCcEEEEEE
Q 004214          261 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD---NSVRLWDSESRCC--VGVGTGHMGAVGAVAF  335 (768)
Q Consensus       261 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~  335 (768)
                      +..|.+||..... ...+..|...+....  ++|++.. ++.++.+   ..|++||+.+++.  +..+.+|   ...++|
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~--wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~w  255 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPA--WSPDGSK-LAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAF  255 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccce--EcCCCCE-EEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeE
Confidence            3689999987655 446677777888887  8888887 5554432   4799999988754  3333333   446899


Q ss_pred             ecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCC-c
Q 004214          336 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDL-V  413 (768)
Q Consensus       336 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~-~  413 (768)
                      +|+|+.++++.+.+|.+.+|.++...        . ....+..+...+.+..|+|||+.|+.++ .+|...+|+++.. .
T Consensus       256 SPDG~~La~~~~~~g~~~Iy~~d~~~--------~-~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~  326 (429)
T PRK01742        256 SPDGSRLAFASSKDGVLNIYVMGANG--------G-TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG  326 (429)
T ss_pred             CCCCCEEEEEEecCCcEEEEEEECCC--------C-CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            99988655555678877766443211        0 1122334556678899999999777655 5788888876432 2


Q ss_pred             eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214          414 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  493 (768)
                      ....+ .+..  .+..|+|+|+.|+.++.++ +.+||+.++........+  ....+.|+|+|++|+.++.+|.+.+|.+
T Consensus       327 ~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        327 GASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             CeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            22222 3433  4678999999998887755 666999888765333322  2356789999999999999998888876


Q ss_pred             --CCCeEEEEeccCCCcEEEEEEcCC
Q 004214          494 --RTGECIATYDKHEDKIWALAVGKK  517 (768)
Q Consensus       494 --~~~~~~~~~~~~~~~v~~l~~s~~  517 (768)
                        .+|..+..+..|.+.+...+|+|-
T Consensus       401 ~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        401 VSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EECCCCceEEccCCCCCCCCcccCCC
Confidence              368888899888888999999984

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.69  E-value=4.2e-14  Score=150.20  Aligned_cols=398  Identities=13%  Similarity=0.168  Sum_probs=218.8

Q ss_pred             CEEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEE-EecCccceeEE
Q 004214            1 MFALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA-TLDKHFSRVTS   79 (768)
Q Consensus         1 ~~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~-~l~~h~~~V~~   79 (768)
                      .++++|+.-+.|++|++..-..-..+.||.+.|.++.|+-||.+  +++.|+|.++++|++.+++... +.-+|+..|+.
T Consensus       146 ~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~--i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~  223 (967)
T KOG0974|consen  146 LYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRY--IASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA  223 (967)
T ss_pred             EEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcE--EEEEecCcceeeeecccccccCcccccccceeEE
Confidence            37899999999999999744434469999999999999999998  9999999999999999998876 67789999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecc--eeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEee
Q 004214           80 MAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY--EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG  157 (768)
Q Consensus        80 l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (768)
                      ++|.|+  +++|++.|.+.++|+....+.. .+..+  ..+..+...+..                       ...++++
T Consensus       224 ~~~~~n--~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~-----------------------~~~vT~g  277 (967)
T KOG0974|consen  224 CCFLPN--RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGV-----------------------IIKVTGG  277 (967)
T ss_pred             EEeccc--eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCc-----------------------eEEEeec
Confidence            999998  9999999999999976543332 33322  224555554443                       3789999


Q ss_pred             CCcEEEEEEcCCceeeeecCCceeecccccCccccee----EEEEccCCCceEEEEe--cCeEEEEeeccCcccceeeEE
Q 004214          158 ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFT----AATVLPSNQGLLCVTA--DQQLLLYTTVEVPEKKMELIL  231 (768)
Q Consensus       158 ~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~--dg~i~~~~~~~~~~~~~~~~~  231 (768)
                      .||.+++|++.+.......................+.    ...+...+..+...+.  ++.+......           
T Consensus       278 ~Ds~lk~~~l~~r~~e~~~~~~~~~~s~~kl~~~~f~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------  346 (967)
T KOG0974|consen  278 NDSTLKLWDLNGRGLEGHVEQSSLLSSIVKLKDDQFVKCDTLLNFANHGGKLSILGNKGEKELITFESD-----------  346 (967)
T ss_pred             cCcchhhhhhhccccccceeeeeeecchhhhcceeeeehHHHHHHHhcCCeEeecccccccceeeeeec-----------
Confidence            9999999998766221110000000000000000000    0000011111111111  1111111111           


Q ss_pred             EeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCE----EEEEEeCCC
Q 004214          232 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI----LIVTGSKDN  307 (768)
Q Consensus       232 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~----~l~~~~~dg  307 (768)
                               .-..+.+.-.+..+++.+++.+.+.+.-...........-|. .+.     ..+....    ....-.-+|
T Consensus       347 ---------s~~~i~~~~~~~~~v~~~~~k~~~~v~~~~~~~~~~~~~~h~-~~s-----~~~~~~~~~~~~~~~~~~~g  411 (967)
T KOG0974|consen  347 ---------SMLRIIFSCTNDDWVAHMSNKGDIYVAWHQNTIVITTSSLHR-KLS-----ANPISQVCEASYVASKLIDG  411 (967)
T ss_pred             ---------cCccceehccccceeeeccCCCcEEEEEeecccCccchhHHH-HHh-----hCcccceeeeeeehhhccCC
Confidence                     001122222355677778887877775544332111111111 000     1111110    112222345


Q ss_pred             eEEEEeCCC-------ceE---EEee-ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe
Q 004214          308 SVRLWDSES-------RCC---VGVG-TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV  376 (768)
Q Consensus       308 ~i~iwd~~~-------~~~---~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  376 (768)
                      ..+.|....       .-.   ...+ ......+.++.-.+.+. .++.|+.-|.+.++++..+.........  +....
T Consensus       412 ~~~~r~~~~~~~~~ad~~~i~~~~~f~~~~~~~~~~l~~~~~~~-~~l~Gs~~g~lv~~~l~~~~~~~~~~~~--~~~~~  488 (967)
T KOG0974|consen  412 SIQVRNLSGSLESFADVLNIRSLKEFRLPFAFRIPCLTSVVEDN-LILIGSRHGELVLYNLDEPNDDIVLSLS--RSHEL  488 (967)
T ss_pred             cchhhhhhcccccccceeEEeeeeeeccccCCCCcceecccCcc-eEEEccCcCcEEEecCCCCCccceeecc--Ccccc
Confidence            556664211       001   1111 12334556666666544 6889999999999999866433221111  11111


Q ss_pred             eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCce------EEEEeccCCC-----eEEEEEccCCCEEEEeeCCCc
Q 004214          377 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS------VVTFRGHKRG-----IWSVEFSPVDQVVITASGDKT  445 (768)
Q Consensus       377 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~-----v~~v~~s~~~~~l~t~~~d~~  445 (768)
                      ..| +.+....--++.-++.+.+.||...++.+.....      +..++.+..-     ...+.++| +++++.|-....
T Consensus       489 ~~~-~si~~~~~kdn~~~~~~~g~dg~~~~~~~~r~~~~n~~~~L~~~~~~s~v~~g~~~~~~~~~k-~n~~~~gf~st~  566 (967)
T KOG0974|consen  489 DTG-SSITCIRSKDNSAIFMTTGRDGYWSTIELIRGGTTNYPMELMNKKSFSTVSSGALPSKFINWK-GNLLIVGFYSTS  566 (967)
T ss_pred             ccc-ccEEEEecCCCcEEEEEecCCcEEEEEEEecCccccccceeeeeccCCeeeecchhhhhccCC-CceEEEEEEecc
Confidence            111 2344444444556677788889888887754432      2222222211     11223333 566666666666


Q ss_pred             EEEEeCCCCcee
Q 004214          446 IKIWSISDGSCL  457 (768)
Q Consensus       446 i~iwd~~~~~~~  457 (768)
                      ..+||..+...+
T Consensus       567 f~l~n~T~~~~i  578 (967)
T KOG0974|consen  567 FILWNETNETPI  578 (967)
T ss_pred             ceEeccccCcee
Confidence            777776554443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=6.5e-16  Score=147.79  Aligned_cols=195  Identities=17%  Similarity=0.224  Sum_probs=155.7

Q ss_pred             EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214          331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP  410 (768)
Q Consensus       331 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  410 (768)
                      .+++|+.+|. .+++|+.||++|+|+++..          ........|...|.++.|+|||++|++-+.| ..+||+..
T Consensus       148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~----------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~  215 (398)
T KOG0771|consen  148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSM----------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN  215 (398)
T ss_pred             eEEEEcCCCC-EeeeccccceEEEEecCcc----------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEec
Confidence            7889999976 7999999999999998743          3444556788999999999999999999999 89999999


Q ss_pred             CCceEEEEecc--CCCeEEEEEccCC-----CEEEEeeCCCcEEEEeCCCCc-----eeEEeecCCCcEEEEEEEeCCCE
Q 004214          411 DLVSVVTFRGH--KRGIWSVEFSPVD-----QVVITASGDKTIKIWSISDGS-----CLKTFEGHTSSVLRASFLTRGAQ  478 (768)
Q Consensus       411 ~~~~~~~~~~~--~~~v~~v~~s~~~-----~~l~t~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~  478 (768)
                      ++..+......  ......+.|+.++     .+++....-+.|+.|++....     ..++...-...|++++.+++|++
T Consensus       216 ~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf  295 (398)
T KOG0771|consen  216 TGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF  295 (398)
T ss_pred             cCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence            99766655532  2346678888877     333444445667777764332     12222234468999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          479 IVSCGADGLVKLWTVRTGECIATY-DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       479 l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      ++.|+.||.|-|++..+-++++-. +.|...|+.+.|+|+.+++++.+.|....|..+.-
T Consensus       296 ~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  296 LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999999999999998887766 47999999999999999999999999988887653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.68  E-value=6.6e-15  Score=135.47  Aligned_cols=236  Identities=15%  Similarity=0.160  Sum_probs=185.4

Q ss_pred             CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce---EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEe
Q 004214          280 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC---CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS  356 (768)
Q Consensus       280 ~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  356 (768)
                      ....+|+|.+  +.++... ++.+.....|.||......   ...+++.|...|+.++|+|..+ .|++++.|..-++|.
T Consensus         8 ~~~~pitchA--wn~drt~-iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~   83 (361)
T KOG1523|consen    8 RLLEPITCHA--WNSDRTQ-IAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWT   83 (361)
T ss_pred             eccCceeeee--ecCCCce-EEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC-ceeEccCCCCccccc
Confidence            3457888886  5555554 9999999999999887654   6778889999999999999965 699999999999998


Q ss_pred             CCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceE----EEEeccCCCeEEEEEcc
Q 004214          357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV----VTFRGHKRGIWSVEFSP  432 (768)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~v~~s~  432 (768)
                      ...+.       ..++...+..++...+++.|+|.++.||+|+....|.||-++....-    ..-+.+...|++++|+|
T Consensus        84 ~~~~~-------~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp  156 (361)
T KOG1523|consen   84 QPSGG-------TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP  156 (361)
T ss_pred             cCCCC-------eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC
Confidence            84332       66677788889999999999999999999999999999988654322    12234667899999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCC------------------CCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214          433 VDQVVITASGDKTIKIWSIS------------------DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR  494 (768)
Q Consensus       433 ~~~~l~t~~~d~~i~iwd~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  494 (768)
                      ++-+|++|+.|+..|||..-                  .|.++..+....+.+..+.|+|+|+.|+-.+.|+.+.+-|..
T Consensus       157 nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~  236 (361)
T KOG1523|consen  157 NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA  236 (361)
T ss_pred             CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence            99999999999999999741                  133445555567899999999999999999999999999876


Q ss_pred             CCe-EEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 004214          495 TGE-CIATYDKHEDKIWALAVGKKTEMFATGGSD  527 (768)
Q Consensus       495 ~~~-~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d  527 (768)
                      ... .+.+.....-+..++.|-.+.. +++++.|
T Consensus       237 ~p~~~v~~~~~~~lP~ls~~~ise~~-vv~ag~~  269 (361)
T KOG1523|consen  237 GPSERVQSVATAQLPLLSVSWISENS-VVAAGYD  269 (361)
T ss_pred             CCchhccchhhccCCceeeEeecCCc-eeecCCC
Confidence            654 4444444446777777765443 4444444

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.68  E-value=1.8e-16  Score=152.55  Aligned_cols=263  Identities=20%  Similarity=0.241  Sum_probs=190.6

Q ss_pred             cceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEE
Q 004214           74 FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF  153 (768)
Q Consensus        74 ~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (768)
                      .-+...+.++.+|++|+.+|.-|.|..+|+.++++...+...+.+..+.|.....                         
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq-------------------------  183 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQ-------------------------  183 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchH-------------------------
Confidence            4456788999999999999999999999999999888887766666665555442                         


Q ss_pred             EEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEe
Q 004214          154 ITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK  233 (768)
Q Consensus       154 ~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~  233 (768)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (545)
T KOG1272|consen  184 --------------------------------------------------------------------------------  183 (545)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214          234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD  313 (768)
Q Consensus       234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd  313 (768)
                                          ++|++-. ..++|||-. |..+..+..| ..|..+.  |.|. ..+|++++..|.++.-|
T Consensus       184 --------------------~~AVAQK-~y~yvYD~~-GtElHClk~~-~~v~rLe--FLPy-HfLL~~~~~~G~L~Y~D  237 (545)
T KOG1272|consen  184 --------------------FFAVAQK-KYVYVYDNN-GTELHCLKRH-IRVARLE--FLPY-HFLLVAASEAGFLKYQD  237 (545)
T ss_pred             --------------------HHHhhhh-ceEEEecCC-CcEEeehhhc-Cchhhhc--ccch-hheeeecccCCceEEEe
Confidence                                2333222 344444432 2222233222 2344444  4443 45699999999999999


Q ss_pred             CCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC
Q 004214          314 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS  393 (768)
Q Consensus       314 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  393 (768)
                      +.+|+.+..+..-.+.+..++-+|-+. ++-+|..+|+|.+|....          ..+......|.++|.++++.++|+
T Consensus       238 VS~GklVa~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~s----------kePLvKiLcH~g~V~siAv~~~G~  306 (545)
T KOG1272|consen  238 VSTGKLVASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNS----------KEPLVKILCHRGPVSSIAVDRGGR  306 (545)
T ss_pred             echhhhhHHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCCC----------cchHHHHHhcCCCcceEEECCCCc
Confidence            999999999998899999999999855 889999999999998763          335555678999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEe-CCCCc--eeEEeecC--CCcEE
Q 004214          394 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS-ISDGS--CLKTFEGH--TSSVL  468 (768)
Q Consensus       394 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd-~~~~~--~~~~~~~~--~~~v~  468 (768)
                      ++++++.|..++|||++....+.++.. ..+...++||..|. || .+....|.||. .-.+.  +-..+-.|  .++|.
T Consensus       307 YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkgl-LA-~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~  383 (545)
T KOG1272|consen  307 YMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGL-LA-LSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVE  383 (545)
T ss_pred             EEeecccccceeEeeeccccccceeec-CCCccccccccccc-ee-eecCCeeeeehhhhcCCCCCCcchhhhccCcccc
Confidence            999999999999999999887777765 56778889986553 33 34446799995 22211  11111122  34788


Q ss_pred             EEEEEeCCCEEEE
Q 004214          469 RASFLTRGAQIVS  481 (768)
Q Consensus       469 ~~~~s~~~~~l~s  481 (768)
                      .+.|.|-...|-.
T Consensus       384 ~l~FcP~EDvLGI  396 (545)
T KOG1272|consen  384 DLRFCPYEDVLGI  396 (545)
T ss_pred             cceeccHHHeeec
Confidence            8888887665544

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.68  E-value=5.7e-15  Score=139.64  Aligned_cols=273  Identities=12%  Similarity=0.135  Sum_probs=199.2

Q ss_pred             ccCCceeEEEEecCCCCEEEEEe-CCCcEEEEECCCceeeee------eeCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214          237 GYNEEILDLKFLGEEEQYLAVAT-NIEQVQVYDLSSMSCSYV------LAGHSEIVLCLDTCALSSGKILIVTGSKDNSV  309 (768)
Q Consensus       237 ~~~~~i~~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~~~~------~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i  309 (768)
                      .....+..++|......-+..+. .+..+..+......+...      ......+|..+.    ..++. |++|-.+|.+
T Consensus        53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~----~~dg~-Litc~~sG~l  127 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLK----LADGT-LITCVSSGNL  127 (412)
T ss_pred             chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchh----hcCCE-EEEEecCCcE
Confidence            34556777888655555555555 666777777766655443      344556666663    23344 8889999999


Q ss_pred             EEEeCCCce----EEEeeecccCcEEEEEEecCCCcEEEEEeCC--CeEEEEeCCCCCCCCccccccceeeEeeccCCCe
Q 004214          310 RLWDSESRC----CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI  383 (768)
Q Consensus       310 ~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i  383 (768)
                      .+|....+.    .+..+..+ ..+..+.-++..+.++++|+..  ..+++||+......... ...+.-..-..-.-.+
T Consensus       128 ~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~a-KNvpnD~L~LrVPvW~  205 (412)
T KOG3881|consen  128 QVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSA-KNVPNDRLGLRVPVWI  205 (412)
T ss_pred             EEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeec-cCCCCccccceeeeee
Confidence            999987432    22222222 4566677777777788889998  88999999865211100 0000000001112346


Q ss_pred             EEEEEccC--CCEEEEEeCCCcEEEEeCCCC-ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEE-
Q 004214          384 NSLAVAPN--DSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-  459 (768)
Q Consensus       384 ~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~-  459 (768)
                      +++.|-|.  ...||+++.-+.+++||.+.+ +++..+.-.+.+++++...|+++++++|..-|.+..||++.++.+.. 
T Consensus       206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~  285 (412)
T KOG3881|consen  206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG  285 (412)
T ss_pred             ccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence            78888887  889999999999999999865 57778888889999999999999999999999999999999998877 


Q ss_pred             eecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCC
Q 004214          460 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK  517 (768)
Q Consensus       460 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  517 (768)
                      +.+..+.|+++..+|.+++|+++|-|..|+|+|+++.+++.... -...++++-+.++
T Consensus       286 ~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~  342 (412)
T KOG3881|consen  286 LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD  342 (412)
T ss_pred             cCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence            88999999999999999999999999999999999977776654 4456666666554

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.68  E-value=3.7e-15  Score=135.05  Aligned_cols=245  Identities=16%  Similarity=0.265  Sum_probs=186.3

Q ss_pred             cceeEEEEccCCCce---EEEEecCeEEEEeeccCccc--ceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004214          191 RGFTAATVLPSNQGL---LCVTADQQLLLYTTVEVPEK--KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ  265 (768)
Q Consensus       191 ~~~~~~~~~~~~~~l---~~~~~dg~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~  265 (768)
                      -..+.+.|.|+....   +.++.+..+++|.+......  ............+..++++..|..-+.+++.+++-|-+..
T Consensus        97 YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCT  176 (364)
T KOG0290|consen   97 YPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCT  176 (364)
T ss_pred             CCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEE
Confidence            455677788877533   66777889999998854221  1111222234556779999999999999999999999999


Q ss_pred             EEECCCce---eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee---ecccCcEEEEEEecCC
Q 004214          266 VYDLSSMS---CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG---TGHMGAVGAVAFSKKL  339 (768)
Q Consensus       266 i~d~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~  339 (768)
                      |||++++.   ....+-.|...|..++  |...+..+|++.+.||.+|+||++...--..+   .....+...++|++..
T Consensus       177 iWdie~~~~~~vkTQLIAHDKEV~DIa--f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD  254 (364)
T KOG0290|consen  177 IWDIETGVSGTVKTQLIAHDKEVYDIA--FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD  254 (364)
T ss_pred             EEEEeeccccceeeEEEecCcceeEEE--eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence            99999874   3567889999999998  77777788999999999999999875433332   2335678899999998


Q ss_pred             CcEEEEEeCC-CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc----
Q 004214          340 QNFLVSGSSD-HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLV----  413 (768)
Q Consensus       340 ~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~----  413 (768)
                      .+++++...| ..|.+.|++.         ...+...+..|...|++++|.| ....|++++.|..+.+||+...-    
T Consensus       255 pnymATf~~dS~~V~iLDiR~---------P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~  325 (364)
T KOG0290|consen  255 PNYMATFAMDSNKVVILDIRV---------PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG  325 (364)
T ss_pred             chHHhhhhcCCceEEEEEecC---------CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC
Confidence            8888887765 4588999985         4456777889999999999999 57789999999999999997542    


Q ss_pred             --eEEEEeccCCCeEEEEEccC-CCEEEEeeCCCcEEE
Q 004214          414 --SVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKI  448 (768)
Q Consensus       414 --~~~~~~~~~~~v~~v~~s~~-~~~l~t~~~d~~i~i  448 (768)
                        ++..+. ....|..+.|+|. +..++.+.. +.+.|
T Consensus       326 ~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  326 EDPILAYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             CCchhhhh-ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence              222222 5678999999974 567777755 44433

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.3e-14  Score=139.08  Aligned_cols=192  Identities=17%  Similarity=0.194  Sum_probs=144.7

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccc
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK  371 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  371 (768)
                      +..++.. +++|+.||++|+|+..+...+.....|.+.|.++.|+|+|+ +|++.+.| ..++|+...+.......    
T Consensus       152 f~~~gs~-latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~~~a~~t----  224 (398)
T KOG0771|consen  152 FNGDGSK-LATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGAALARKT----  224 (398)
T ss_pred             EcCCCCE-eeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCchhhhcC----
Confidence            6666666 99999999999999888888888888999999999999977 79999999 89999998763211111    


Q ss_pred             eeeEeeccCCCeEEEEEccCC-----CEEEEEeCCCcEEEEeCCCCce-----EEEEeccCCCeEEEEEccCCCEEEEee
Q 004214          372 AKAVVAAHGKDINSLAVAPND-----SLVCTGSQDRTACVWRLPDLVS-----VVTFRGHKRGIWSVEFSPVDQVVITAS  441 (768)
Q Consensus       372 ~~~~~~~~~~~i~~~~~s~~~-----~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~v~~v~~s~~~~~l~t~~  441 (768)
                          ....+.....+.|+.++     .+++....-+.|..|++.....     ..........|++++.+++|++++.|+
T Consensus       225 ----~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT  300 (398)
T KOG0771|consen  225 ----PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT  300 (398)
T ss_pred             ----CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence                01222334566677665     3333344455677766543221     111112345799999999999999999


Q ss_pred             CCCcEEEEeCCCCceeEEee-cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214          442 GDKTIKIWSISDGSCLKTFE-GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR  494 (768)
Q Consensus       442 ~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  494 (768)
                      .||.|-|++..+-++++-++ .|...|+.+.|+|+.+++++.+.|....|..+.
T Consensus       301 ~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  301 MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            99999999998888776654 799999999999999999998888777776553

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.65  E-value=4.1e-14  Score=130.53  Aligned_cols=273  Identities=13%  Similarity=0.188  Sum_probs=193.8

Q ss_pred             ecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeeccc
Q 004214          248 LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM  327 (768)
Q Consensus       248 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  327 (768)
                      ++++++++|++... .+.|-|..+.+..+.+.. -+.|.-+.  +..+.-..+.....++.|.+|++...+-...+....
T Consensus        16 fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yie--W~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~   91 (447)
T KOG4497|consen   16 FSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIE--WKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ   91 (447)
T ss_pred             ECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhhee--eeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence            34689999999885 888888888776654433 22333343  445555667778899999999999998888888888


Q ss_pred             CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC-----
Q 004214          328 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-----  402 (768)
Q Consensus       328 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----  402 (768)
                      .++.+++|+|+|++++.+...+-.|.+|.+.+..           ..........+..++|+|+|++.+..+.-.     
T Consensus        92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~-----------~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv  160 (447)
T KOG4497|consen   92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK-----------GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYV  160 (447)
T ss_pred             CcceeeeECCCcceEeeeecceeEEEEEEeccce-----------eEEecccccCceeEEECCCCceeeeeecccHHHHH
Confidence            9999999999999999999999999999987431           111122223456778888887777665421     


Q ss_pred             -------------------------------cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214          403 -------------------------------TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI  451 (768)
Q Consensus       403 -------------------------------~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~  451 (768)
                                                     .+.+||..-.-.+. .....-++..+.|+|.+++|++|+.|+.+||.+-
T Consensus       161 ~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~-aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh  239 (447)
T KOG4497|consen  161 QISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY-AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH  239 (447)
T ss_pred             HHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee-eeeeccceeEEEeccccceEEeeccchhhhhhce
Confidence                                           12233321111111 1113357889999999999999999999988664


Q ss_pred             CCCceeEE------------------------------------------------------------ee------cCCC
Q 004214          452 SDGSCLKT------------------------------------------------------------FE------GHTS  465 (768)
Q Consensus       452 ~~~~~~~~------------------------------------------------------------~~------~~~~  465 (768)
                      -+.++...                                                            ++      ....
T Consensus       240 ~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~  319 (447)
T KOG4497|consen  240 FTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKC  319 (447)
T ss_pred             eeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccc
Confidence            32221111                                                            00      1123


Q ss_pred             cEEEEEEEeCCCEEEEEeCC--CcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          466 SVLRASFLTRGAQIVSCGAD--GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       466 ~v~~~~~s~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      .+-.++|++|..|+++-.+.  ..+-+||++..+....+. ...+|.+..|+|....|+.+.....+++|....
T Consensus       320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg  392 (447)
T KOG4497|consen  320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG  392 (447)
T ss_pred             ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence            46668999999999887653  479999998877666664 677899999999999999888888899998764

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.65  E-value=4.1e-16  Score=150.15  Aligned_cols=231  Identities=17%  Similarity=0.212  Sum_probs=192.2

Q ss_pred             eEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC
Q 004214          285 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA  364 (768)
Q Consensus       285 v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  364 (768)
                      .+.+.  +..+|.. ++.|+..|.|..+|..++.+...+.. ...|..+.|..+..  +++......+.+||-.+.    
T Consensus       132 PY~~~--ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq--~~AVAQK~y~yvYD~~Gt----  201 (545)
T KOG1272|consen  132 PYHLD--YTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQ--FFAVAQKKYVYVYDNNGT----  201 (545)
T ss_pred             Ceeee--ecCCccE-EEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchH--HHHhhhhceEEEecCCCc----
Confidence            34454  6666776 88899999999999999998877653 45678888887644  455567788999986543    


Q ss_pred             ccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCC
Q 004214          365 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK  444 (768)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~  444 (768)
                             ....+.. ...|..+.|-|..-+|++++..|.++.-|+.+|+.+..+..-.+.+..++-+|-+..+-+|...|
T Consensus       202 -------ElHClk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnG  273 (545)
T KOG1272|consen  202 -------ELHCLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNG  273 (545)
T ss_pred             -------EEeehhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCc
Confidence                   2222222 35688999999999999999999999999999999999998889999999999999999999999


Q ss_pred             cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 004214          445 TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG  524 (768)
Q Consensus       445 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~  524 (768)
                      +|.+|.....+++..+..|.++|.++++.++|+|++|++.|..++|||++....+.++.. ..+...+++|..|  +++.
T Consensus       274 tVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~  350 (545)
T KOG1272|consen  274 TVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLAL  350 (545)
T ss_pred             eEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceee
Confidence            999999999999999999999999999999999999999999999999999988887764 5667788888766  4455


Q ss_pred             eCCCcEEEEEcC
Q 004214          525 GSDALVNLWHDS  536 (768)
Q Consensus       525 ~~dg~v~vw~~~  536 (768)
                      |....|.||...
T Consensus       351 ~~G~~v~iw~d~  362 (545)
T KOG1272|consen  351 SYGDHVQIWKDA  362 (545)
T ss_pred             ecCCeeeeehhh
Confidence            555679999753

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=8.7e-13  Score=130.99  Aligned_cols=357  Identities=17%  Similarity=0.187  Sum_probs=215.6

Q ss_pred             CCcEEEEECCCCEEEEEEEcC---CCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCC
Q 004214            9 DRKVLVWDVDGGFCTHYFKGH---KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD   85 (768)
Q Consensus         9 dg~i~vwd~~~~~~~~~l~gh---~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d   85 (768)
                      .-.+.+|+...........++   .......++|++|+   ++..+.+..|+|++..++..+.+...-  .+.++.|||-
T Consensus        10 Se~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~---lfA~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~   84 (566)
T KOG2315|consen   10 SEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGR---LFAYSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPK   84 (566)
T ss_pred             cceeEEeccCCccccccccccCCCCCcceeEEEcCCCc---EEEEEcCCeEEEEEccCCcEEEEeccc--eeeeeeeccc
Confidence            445677777554333333333   34567888999887   555666788999999888655444433  6899999999


Q ss_pred             CCEEEEEe-----C-----CCeEEEEECCCCeeeeeeecceeE-eeEEecCCCCCccccccccchhhhhcccCCcceEEE
Q 004214           86 GSTLISAG-----R-----DKVVNLWDLRDYSCKLTVPTYEMV-EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI  154 (768)
Q Consensus        86 ~~~L~s~~-----~-----dg~i~vWd~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (768)
                      |.+|.+--     .     ...+.+|+++++.....+.....- ....|+.+....+                       
T Consensus        85 g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-----------------------  141 (566)
T KOG2315|consen   85 GNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-----------------------  141 (566)
T ss_pred             ccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhh-----------------------
Confidence            99998631     1     235789999986655555433221 3444444443211                       


Q ss_pred             EeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEee
Q 004214          155 TVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKR  234 (768)
Q Consensus       155 ~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~  234 (768)
                       --..+.+.+|++.+....                                                            .
T Consensus       142 -rlv~nev~f~~~~~f~~~------------------------------------------------------------~  160 (566)
T KOG2315|consen  142 -RLVSNEVQFYDLGSFKTI------------------------------------------------------------Q  160 (566)
T ss_pred             -hhhcceEEEEecCCccce------------------------------------------------------------e
Confidence             111223444444332000                                                            0


Q ss_pred             ecccCCceeEEEEecC-CCCEEEE-----EeCCCcEEEEECCCceeeeeee--C--CccceEEEeeeeecCCCEEEEEEe
Q 004214          235 LVGYNEEILDLKFLGE-EEQYLAV-----ATNIEQVQVYDLSSMSCSYVLA--G--HSEIVLCLDTCALSSGKILIVTGS  304 (768)
Q Consensus       235 ~~~~~~~i~~~~~~~~-~~~~l~~-----~~~~~~i~i~d~~~~~~~~~~~--~--~~~~v~~l~~~~~~~~~~~l~~~~  304 (768)
                      ..-+...|..+.+++. ....+|+     .+.-+.++||..........+.  .  ..+.| .+.  |...+.-+|+.++
T Consensus       161 ~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkv-qm~--WN~~gt~LLvLas  237 (566)
T KOG2315|consen  161 HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKV-QMK--WNKLGTALLVLAS  237 (566)
T ss_pred             eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccccee-EEE--eccCCceEEEEEE
Confidence            0011233444444443 2333333     2334677888765222111110  0  01111 121  4444444444433


Q ss_pred             C-----------CCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEe-CCCeEEEEeCCCCCCCCccccccce
Q 004214          305 K-----------DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKA  372 (768)
Q Consensus       305 ~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~  372 (768)
                      .           ..++++.+++...+... -.-.++|.++.|+|++..+.++-+ .-..+.|||++.             
T Consensus       238 tdVDktn~SYYGEq~Lyll~t~g~s~~V~-L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-------------  303 (566)
T KOG2315|consen  238 TDVDKTNASYYGEQTLYLLATQGESVSVP-LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-------------  303 (566)
T ss_pred             EeecCCCccccccceEEEEEecCceEEEe-cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-------------
Confidence            2           23678888774333332 235799999999999887655544 456789998873             


Q ss_pred             eeEeeccCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC------C
Q 004214          373 KAVVAAHGKDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG------D  443 (768)
Q Consensus       373 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~------d  443 (768)
                      ...+.-..++=+++-|+|.|++++.++-+   |.+-+||+.+.+.+..+...  .-+-+.|+|||++++|+..      |
T Consensus       304 ~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvd  381 (566)
T KOG2315|consen  304 KPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVD  381 (566)
T ss_pred             CEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEec
Confidence            33334455667899999999999988754   78999999998888877643  3456899999999999876      6


Q ss_pred             CcEEEEeCCCCceeEEeecCCCcEEEEEEEeC
Q 004214          444 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTR  475 (768)
Q Consensus       444 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  475 (768)
                      +.++||+. +|..+....-. .....+.|-|.
T Consensus       382 Ng~Kiwhy-tG~~l~~~~f~-sEL~qv~W~P~  411 (566)
T KOG2315|consen  382 NGIKIWHY-TGSLLHEKMFK-SELLQVEWRPF  411 (566)
T ss_pred             CCeEEEEe-cCceeehhhhh-HhHhheeeeec
Confidence            78999997 67666543311 15667788764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=1.6e-14  Score=152.97  Aligned_cols=211  Identities=14%  Similarity=0.082  Sum_probs=147.4

Q ss_pred             CCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC---CeEEEEeCCCCCCCCccccccceeeEeeccCCC
Q 004214          306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD---HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD  382 (768)
Q Consensus       306 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (768)
                      +..|.+||..... ...+..|...+.+.+|+|+|+. ++.++.+   ..|.+||+..+..        .....   ....
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~--------~~l~~---~~g~  249 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRSGAR--------KVVAS---FRGH  249 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCCCce--------EEEec---CCCc
Confidence            4689999987655 3455677888999999999885 5554432   4799999875421        11111   1223


Q ss_pred             eEEEEEccCCCEEEEEe-CCCcEEEE--eCCCCceEEEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCC-cee
Q 004214          383 INSLAVAPNDSLVCTGS-QDRTACVW--RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDG-SCL  457 (768)
Q Consensus       383 i~~~~~s~~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~-~~~  457 (768)
                      ..+++|+|||+.|+.++ .+|.+.||  |+.++. ...+..+...+.+..|+|||+.|+.++ .++...||++... ...
T Consensus       250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~  328 (429)
T PRK01742        250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA  328 (429)
T ss_pred             cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence            34689999999888765 67765555  665554 345666777788999999999776554 5788888876432 222


Q ss_pred             EEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          458 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       458 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      ..+ ++..  ....|+|+|++|+.++.++ +.+||+.+++.......+  ...++.|+|+|++|+.++.+|...+|.+.
T Consensus       329 ~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        329 SLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             EEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence            333 3443  4578999999998887765 566999988765333222  33567899999999999999988888753

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.64  E-value=1.4e-14  Score=133.33  Aligned_cols=209  Identities=16%  Similarity=0.255  Sum_probs=172.5

Q ss_pred             ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCc
Q 004214          324 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT  403 (768)
Q Consensus       324 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  403 (768)
                      ..-..+|+|.+|+++.. .++.+.....|.||.....+       ......++..|...|+.++|+|..+.|++++.|..
T Consensus         7 ~~~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~-------~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn   78 (361)
T KOG1523|consen    7 HRLLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGAD-------LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN   78 (361)
T ss_pred             eeccCceeeeeecCCCc-eEEeccCCceEEEEEecCCC-------CceeceehhhhCcceeEEeecCCCCceeEccCCCC
Confidence            33467899999999965 78999999999999987542       25577788899999999999999999999999999


Q ss_pred             EEEEeCCC---CceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce----eEEeecCCCcEEEEEEEeCC
Q 004214          404 ACVWRLPD---LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC----LKTFEGHTSSVLRASFLTRG  476 (768)
Q Consensus       404 i~i~d~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~  476 (768)
                      -++|...+   .++...+..++...+++.|+|.++.+|+|+....|.||-++...-    -+.-+.+...|+++.|+|++
T Consensus        79 ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn  158 (361)
T KOG1523|consen   79 AYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN  158 (361)
T ss_pred             ccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence            99999843   256667777999999999999999999999999999988754321    12233577899999999999


Q ss_pred             CEEEEEeCCCcEEEEEC-----C-------------CCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          477 AQIVSCGADGLVKLWTV-----R-------------TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       477 ~~l~s~~~dg~i~iwd~-----~-------------~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      -+|++|+.|+..+||..     +             -|+.+..+....+.|..+.|+|+|..|+-.+.|+.+.+=|...+
T Consensus       159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence            99999999999999863     1             13344455456678999999999999999999999999887766


Q ss_pred             HH
Q 004214          539 AE  540 (768)
Q Consensus       539 ~~  540 (768)
                      .+
T Consensus       239 ~~  240 (361)
T KOG1523|consen  239 SE  240 (361)
T ss_pred             ch
Confidence            43

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.62  E-value=3e-14  Score=139.98  Aligned_cols=211  Identities=19%  Similarity=0.279  Sum_probs=148.8

Q ss_pred             cceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 004214          191 RGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS  270 (768)
Q Consensus       191 ~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~  270 (768)
                      ..+....-.+.+-.++++-..|.+.+++....+.   .........-....++++.|.+.++..++++-.+|.+++||..
T Consensus       174 Hdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~---sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~  250 (636)
T KOG2394|consen  174 HDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEV---SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE  250 (636)
T ss_pred             ecccccccCCCCcceEEeeccCceEEecchhhHH---HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc
Confidence            3444445567777889999999999888665221   1112222233347899999999999999999999999999972


Q ss_pred             CceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCC
Q 004214          271 SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH  350 (768)
Q Consensus       271 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg  350 (768)
                      -      ..+.+.+-    +...+.+.. +.....-+      ..+..++..+.--.+.|...+|+|||+ +|++.+.||
T Consensus       251 ~------~~~~t~p~----~~~~k~~~~-f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDG  312 (636)
T KOG2394|consen  251 I------VCGATAPS----YQALKDGDQ-FAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDG  312 (636)
T ss_pred             c------cccCCCCc----ccccCCCCe-eEEeeeec------cccCCccceeEeccccccceeEcCCCc-eEEEEecCc
Confidence            1      11111111    113334433 33221111      111133333334456899999999977 899999999


Q ss_pred             eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEE
Q 004214          351 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEF  430 (768)
Q Consensus       351 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~  430 (768)
                      .++|||+..          ..........-+...|++|||||++|++|+.|.-|.||.+...+.+..-.+|...|..|+|
T Consensus       313 fLRvF~fdt----------~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaF  382 (636)
T KOG2394|consen  313 FLRIFDFDT----------QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAF  382 (636)
T ss_pred             eEEEeeccH----------HHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEee
Confidence            999999973          3334444445578899999999999999999999999999999999999999999999999


Q ss_pred             cc
Q 004214          431 SP  432 (768)
Q Consensus       431 s~  432 (768)
                      .|
T Consensus       383 Dp  384 (636)
T KOG2394|consen  383 DP  384 (636)
T ss_pred             cc
Confidence            83

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=8.5e-14  Score=130.23  Aligned_cols=227  Identities=16%  Similarity=0.197  Sum_probs=157.5

Q ss_pred             EEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcc--cccc--ceee
Q 004214          299 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ--PMNL--KAKA  374 (768)
Q Consensus       299 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~--~~~~  374 (768)
                      -++++..|-.|++|+-....+...-......|++++|-|.+..-++.|+..| |.+|..+........  -...  ....
T Consensus       112 ~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl  190 (445)
T KOG2139|consen  112 AFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVL  190 (445)
T ss_pred             hhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhhe
Confidence            3788899999999998874433333345678999999999888888888765 899987643221110  0000  0111


Q ss_pred             EeeccCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC-
Q 004214          375 VVAAHGKDINSLAVAPNDSLVCTGSQ-DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS-  452 (768)
Q Consensus       375 ~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~-  452 (768)
                      ...+| .+|+++.|.+||..+++++. |..|.|||..++..+.-.....+.++-+.||||+.+|+++.-|+..++|+.. 
T Consensus       191 ~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q  269 (445)
T KOG2139|consen  191 QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ  269 (445)
T ss_pred             eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcc
Confidence            12233 78999999999999999885 5689999999987766554456788999999999999999999999999643 


Q ss_pred             CCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC----Ce-----------EEEEe-----cc----CCCc
Q 004214          453 DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT----GE-----------CIATY-----DK----HEDK  508 (768)
Q Consensus       453 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~----~~-----------~~~~~-----~~----~~~~  508 (768)
                      +..+.+-.- ..+.|...+|+|.|++|+-+.. |.-++|.+..    +.           .+..+     ..    -.++
T Consensus       270 ~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cge  347 (445)
T KOG2139|consen  270 SWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGE  347 (445)
T ss_pred             cceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCc
Confidence            444444433 3458999999999997754443 3334444321    10           11111     11    1467


Q ss_pred             EEEEEEcCCCCEEEEEeCCCc
Q 004214          509 IWALAVGKKTEMFATGGSDAL  529 (768)
Q Consensus       509 v~~l~~s~~~~~l~s~~~dg~  529 (768)
                      +.+++|.|.|++||+....+.
T Consensus       348 aq~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  348 AQCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             cceeeECCCCCEEEEEEcCCc
Confidence            889999999999998765543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.62  E-value=1.8e-12  Score=127.18  Aligned_cols=365  Identities=16%  Similarity=0.183  Sum_probs=219.7

Q ss_pred             EEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEE
Q 004214           13 LVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISA   92 (768)
Q Consensus        13 ~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~   92 (768)
                      .+|+..+...-..+....-++..++|||.|.+  |++....| |.+|.-..+..+..+. |.. |..+.|||.++||.+-
T Consensus        15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~--l~~~~~~~-V~~~~g~~~~~l~~~~-~~~-V~~~~fSP~~kYL~tw   89 (561)
T COG5354          15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTY--LFSEHAAG-VECWGGPSKAKLVRFR-HPD-VKYLDFSPNEKYLVTW   89 (561)
T ss_pred             EeecCccccccccccccCcchhheeecCcchh--eehhhccc-eEEccccchhheeeee-cCC-ceecccCcccceeeee
Confidence            34555555433344446778999999999998  77776666 9999988877666665 444 8999999999999997


Q ss_pred             eCCCe---------------EEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEee
Q 004214           93 GRDKV---------------VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG  157 (768)
Q Consensus        93 ~~dg~---------------i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (768)
                      +..+.               +.+||..++..+..+......                                       
T Consensus        90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~---------------------------------------  130 (561)
T COG5354          90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP---------------------------------------  130 (561)
T ss_pred             ccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc---------------------------------------
Confidence            75443               555555555544444322110                                       


Q ss_pred             CCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecc
Q 004214          158 ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG  237 (768)
Q Consensus       158 ~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~  237 (768)
                                                      ..+...+.|+-+....+-. ....+.++.+...-.    ......+  
T Consensus       131 --------------------------------~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~----~~p~~~l--  171 (561)
T COG5354         131 --------------------------------YLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIE----EHPFKNL--  171 (561)
T ss_pred             --------------------------------ccccceeeeeecchhhhhh-ccCeEEEEecCCccc----cCchhhc--
Confidence                                            0122223333333333222 344555555421110    0000000  


Q ss_pred             cCCceeEEEEecC-CCCEEEE-----EeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEe-------
Q 004214          238 YNEEILDLKFLGE-EEQYLAV-----ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS-------  304 (768)
Q Consensus       238 ~~~~i~~~~~~~~-~~~~l~~-----~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~-------  304 (768)
                      ....+.+..++|. +...||.     ....+.+++|.+..+..+..-.-..-.-..+.  +.+.+..+++-.-       
T Consensus       172 r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk--W~~~g~~ll~l~~t~~ksnK  249 (561)
T COG5354         172 RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK--WQVLGKYLLVLVMTHTKSNK  249 (561)
T ss_pred             cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE--EecCCceEEEEEEEeeeccc
Confidence            1245566666664 3344444     23467888998876655433211111111222  4444444332211       


Q ss_pred             ---CCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEE-eCCCeEEEEeCCCCCCCCccccccceeeEeeccC
Q 004214          305 ---KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG-SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG  380 (768)
Q Consensus       305 ---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  380 (768)
                         ....++++++....+.... .-.++|...+|.|.++.+.+.. -.+..+.++|++..             .......
T Consensus       250 syfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-------------l~~~~Pe  315 (561)
T COG5354         250 SYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-------------LRFYFPE  315 (561)
T ss_pred             ceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-------------eEEecCC
Confidence               1346788888754443332 5689999999999987654443 56788889988742             1222233


Q ss_pred             CCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceEE-EEeccCCCeEEEEEccCCCEEEEeeC------CCcEEEEe
Q 004214          381 KDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLVSVV-TFRGHKRGIWSVEFSPVDQVVITASG------DKTIKIWS  450 (768)
Q Consensus       381 ~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~-~~~~~~~~v~~v~~s~~~~~l~t~~~------d~~i~iwd  450 (768)
                      ..=+.+.|+|.+++++.++-|   |.+-+||......+. .+.+.  ..+-+.|+|+++++.++..      |..|.|||
T Consensus       316 ~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~  393 (561)
T COG5354         316 QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWD  393 (561)
T ss_pred             cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEE
Confidence            444678899999999998765   579999987654443 55543  3455789999999888753      77899999


Q ss_pred             CCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCC
Q 004214          451 ISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG  486 (768)
Q Consensus       451 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  486 (768)
                      +.... +.       ..+.+.|.|.|++..+.+.++
T Consensus       394 v~g~~-~f-------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         394 VYGAK-VF-------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             ecCch-hh-------hhhhccccCCcccceeeccCC
Confidence            85332 22       456688999888887777665

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=1.5e-13  Score=136.18  Aligned_cols=195  Identities=16%  Similarity=0.219  Sum_probs=147.5

Q ss_pred             eEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe
Q 004214          243 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV  322 (768)
Q Consensus       243 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  322 (768)
                      .+++++.++..++++|+. ..|+-++++.|..+..+....+.+.++.  ..+-.+ +|++|+.+|.|..||.+....+..
T Consensus       137 RDm~y~~~scDly~~gsg-~evYRlNLEqGrfL~P~~~~~~~lN~v~--in~~hg-Lla~Gt~~g~VEfwDpR~ksrv~~  212 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGSG-SEVYRLNLEQGRFLNPFETDSGELNVVS--INEEHG-LLACGTEDGVVEFWDPRDKSRVGT  212 (703)
T ss_pred             ccccccCCCccEEEeecC-cceEEEEccccccccccccccccceeee--ecCccc-eEEecccCceEEEecchhhhhhee
Confidence            455565556666666655 7888899999999988888888888886  545555 599999999999999988766655


Q ss_pred             ee------cccC-----cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214          323 GT------GHMG-----AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN  391 (768)
Q Consensus       323 ~~------~~~~-----~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  391 (768)
                      +.      .|.+     .|+++.|+.+|- .+++|+.+|.|.|||++...+         ....-.....+|..+.|.+.
T Consensus       213 l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~p---------l~~kdh~~e~pi~~l~~~~~  282 (703)
T KOG2321|consen  213 LDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKP---------LLVKDHGYELPIKKLDWQDT  282 (703)
T ss_pred             eecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCc---------eeecccCCccceeeeccccc
Confidence            43      2333     499999999855 699999999999999985421         22222334567888999875


Q ss_pred             --CCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 004214          392 --DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD  453 (768)
Q Consensus       392 --~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~  453 (768)
                        +..+++ .....++|||-.+++....+.. ...+..+|+-|++.++++|-.++.+..|=+..
T Consensus       283 ~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  283 DQQNKVVS-MDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             CCCceEEe-cchHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence              344444 4457899999999999888874 45699999999999999998888777766543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=5.4e-12  Score=125.48  Aligned_cols=264  Identities=14%  Similarity=0.190  Sum_probs=171.7

Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN  341 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  341 (768)
                      ..+.+|+++++.....+......-++..  |..+. . +++--..+.+.+|+..+.+... ..-|...|+.+.++|.+..
T Consensus       105 pn~~v~~vet~~~~s~~q~k~Q~~W~~q--fs~dE-s-l~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~  179 (566)
T KOG2315|consen  105 PNVLVYNVETGVQRSQIQKKMQNGWVPQ--FSIDE-S-LAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEP  179 (566)
T ss_pred             CceeeeeeccceehhheehhhhcCcccc--cccch-h-hhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCC
Confidence            5677888877554444443332224554  33333 3 4444446789999988743332 2346788999999987443


Q ss_pred             -EEEE-----EeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE-EEE--EeCC---------Cc
Q 004214          342 -FLVS-----GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL-VCT--GSQD---------RT  403 (768)
Q Consensus       342 -~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~--~~~d---------g~  403 (768)
                       .+++     .+.-+.|++|.+.......    .......   ...+-..+.|++-|.- |+.  ..-|         .+
T Consensus       180 ~~vAvyvPe~kGaPa~vri~~~~~~~~~~----~~a~ksF---Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~  252 (566)
T KOG2315|consen  180 PFVAVYVPEKKGAPASVRIYKYPEEGQHQ----PVANKSF---FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQT  252 (566)
T ss_pred             ceEEEEccCCCCCCcEEEEeccccccccc----hhhhccc---cccceeEEEeccCCceEEEEEEEeecCCCccccccce
Confidence             3333     3456789999887321111    0001111   1123345677775542 222  2223         36


Q ss_pred             EEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEe--eCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEE
Q 004214          404 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA--SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVS  481 (768)
Q Consensus       404 i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~--~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  481 (768)
                      ++++++........+. ..++|.++.|+|+++-+++.  -.-..+.|||+ .+.++..|  ..++-+++-|+|.|++++.
T Consensus       253 Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df--~egpRN~~~fnp~g~ii~l  328 (566)
T KOG2315|consen  253 LYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDF--PEGPRNTAFFNPHGNIILL  328 (566)
T ss_pred             EEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeC--CCCCccceEECCCCCEEEE
Confidence            8888877434433333 57899999999999766654  45668999998 46666666  5677788999999999988


Q ss_pred             EeC---CCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC------CCcEEEEEcCCHHHHHH
Q 004214          482 CGA---DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS------DALVNLWHDSTAAEREE  543 (768)
Q Consensus       482 ~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~------dg~v~vw~~~~~~~~~~  543 (768)
                      +|-   -|.|-|||+.+.+++..+.....  +-+.|+|||++++|+..      |..++||+.......+.
T Consensus       329 AGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~  397 (566)
T KOG2315|consen  329 AGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEK  397 (566)
T ss_pred             eecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehh
Confidence            876   47899999999999999875544  44789999999999875      67789999876544333

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=4.3e-13  Score=133.04  Aligned_cols=282  Identities=15%  Similarity=0.184  Sum_probs=197.4

Q ss_pred             ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC
Q 004214          237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES  316 (768)
Q Consensus       237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~  316 (768)
                      .+....+.+..++++...+|+|.....|++||+........-......|.-.   ..+++-.-++.-..|.+|.+.... 
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~fe---iLsDD~SK~v~L~~DR~IefHak~-  124 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFE---ILSDDYSKSVFLQNDRTIEFHAKY-  124 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEE---EeccchhhheEeecCceeeehhhc-
Confidence            4555667788887777788899999999999998876654443333444333   333332224445556666554322 


Q ss_pred             ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214          317 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC  396 (768)
Q Consensus       317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  396 (768)
                      |.....-  -...-..++++..... |+.++....|.-+++..+.          ....+......++++.+++-..+|+
T Consensus       125 G~hy~~R--IP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGr----------fL~P~~~~~~~lN~v~in~~hgLla  191 (703)
T KOG2321|consen  125 GRHYRTR--IPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGR----------FLNPFETDSGELNVVSINEEHGLLA  191 (703)
T ss_pred             Ceeeeee--cCcCCccccccCCCcc-EEEeecCcceEEEEccccc----------cccccccccccceeeeecCccceEE
Confidence            1111110  1122244555544343 4444445567777777542          2333344457899999999999999


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEec------cCC-----CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee-cCC
Q 004214          397 TGSQDRTACVWRLPDLVSVVTFRG------HKR-----GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-GHT  464 (768)
Q Consensus       397 ~~~~dg~i~i~d~~~~~~~~~~~~------~~~-----~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~  464 (768)
                      +|+.+|.|.+||.++...+..+..      |.+     .|+++.|+.+|-.+++|..+|.|.|||++..+++..-. +..
T Consensus       192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e  271 (703)
T KOG2321|consen  192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYE  271 (703)
T ss_pred             ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCc
Confidence            999999999999988776665543      222     49999999999999999999999999999988876554 344


Q ss_pred             CcEEEEEEEeC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          465 SSVLRASFLTR--GAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       465 ~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      -+|..+.|.+.  ++.+++. ....++|||-.+|+....+. ....+..+++-|++-+++++-.++.+..|-+..
T Consensus       272 ~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  272 LPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             cceeeecccccCCCceEEec-chHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence            57888999775  3445544 34689999999999999987 566699999999999999999999887776543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.58  E-value=9.6e-12  Score=114.96  Aligned_cols=237  Identities=18%  Similarity=0.241  Sum_probs=153.8

Q ss_pred             cEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccc--eeEEEEEcCCCCEEEEEe-CC------CeEEEEE
Q 004214           32 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFS--RVTSMAITSDGSTLISAG-RD------KVVNLWD  102 (768)
Q Consensus        32 ~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~--~V~~l~fs~d~~~L~s~~-~d------g~i~vWd  102 (768)
                      ...+++|+.|...  ++.|.++| .+||+.+.-+.......+.+  .+..|-|-  .++|+-.| ..      +.|.|||
T Consensus         7 ~~lsvs~NQD~Sc--Fava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWD   81 (346)
T KOG2111|consen    7 KTLSVSFNQDHSC--FAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWD   81 (346)
T ss_pred             ceeEEEEccCCce--EEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEe
Confidence            3445899998776  77777777 89999876444333332333  23333343  45665443 22      4799999


Q ss_pred             CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214          103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI  182 (768)
Q Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~  182 (768)
                      =...+++.++....++.++.+.++.                         +++. -.+.|.+|.....            
T Consensus        82 D~k~~~i~el~f~~~I~~V~l~r~r-------------------------iVvv-l~~~I~VytF~~n------------  123 (346)
T KOG2111|consen   82 DLKERCIIELSFNSEIKAVKLRRDR-------------------------IVVV-LENKIYVYTFPDN------------  123 (346)
T ss_pred             cccCcEEEEEEeccceeeEEEcCCe-------------------------EEEE-ecCeEEEEEcCCC------------
Confidence            8888888888888888888776642                         2222 2234555544322            


Q ss_pred             cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec-CCCCEEEE-EeC
Q 004214          183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG-EEEQYLAV-ATN  260 (768)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~-~~~  260 (768)
                                                              +......   ... .....  -++..+ .+..+||. |..
T Consensus       124 ----------------------------------------~k~l~~~---et~-~NPkG--lC~~~~~~~k~~LafPg~k  157 (346)
T KOG2111|consen  124 ----------------------------------------PKLLHVI---ETR-SNPKG--LCSLCPTSNKSLLAFPGFK  157 (346)
T ss_pred             ----------------------------------------hhheeee---ecc-cCCCc--eEeecCCCCceEEEcCCCc
Confidence                                                    2100000   000 00001  111111 22233333 445


Q ss_pred             CCcEEEEECCCcee--eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCe-EEEEeCCCceEEEeeec--ccCcEEEEEE
Q 004214          261 IEQVQVYDLSSMSC--SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS-VRLWDSESRCCVGVGTG--HMGAVGAVAF  335 (768)
Q Consensus       261 ~~~i~i~d~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~--~~~~v~~~~~  335 (768)
                      -|+|+|-|+.....  ...+..|...|.|++  ..-+|. ++||++..|+ |||||..+|..+..+..  ....|.+++|
T Consensus       158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~--Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF  234 (346)
T KOG2111|consen  158 TGQVQIVDLASTKPNAPSIINAHDSDIACVA--LNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF  234 (346)
T ss_pred             cceEEEEEhhhcCcCCceEEEcccCceeEEE--EcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence            69999999887655  578899999999996  555555 5999999986 79999999999988763  4567999999


Q ss_pred             ecCCCcEEEEEeCCCeEEEEeCCCCC
Q 004214          336 SKKLQNFLVSGSSDHTIKVWSFDGLS  361 (768)
Q Consensus       336 ~~~~~~~l~s~~~dg~i~iwd~~~~~  361 (768)
                      +|+.. +|+++|..|++.++.+....
T Consensus       235 Sp~~s-~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  235 SPNSS-WLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             CCCcc-EEEEEcCCCeEEEEEeecCC
Confidence            99966 89999999999999988643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=1.5e-12  Score=137.50  Aligned_cols=236  Identities=11%  Similarity=0.072  Sum_probs=159.5

Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEe--CCCeEEEEeCCCceEEEeeecccCcEEEEEEecCC
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS--KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL  339 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  339 (768)
                      ..|.++|....... .+..+...+.+..  ++|++..++++..  .+..|.+|++.+++..... ...+.+....|+|+|
T Consensus       179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~--wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG  254 (429)
T PRK03629        179 YELRVSDYDGYNQF-VVHRSPQPLMSPA--WSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDG  254 (429)
T ss_pred             eeEEEEcCCCCCCE-EeecCCCceeeeE--EcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCC
Confidence            47888888765543 3444556777776  8888887444432  2457999999887643322 223334568999999


Q ss_pred             CcEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC-Cc--EEEEeCCCCce
Q 004214          340 QNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-RT--ACVWRLPDLVS  414 (768)
Q Consensus       340 ~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~--i~i~d~~~~~~  414 (768)
                      +.++++.+.+|  .|.+||+..+.          . .....+...+....|+|+|+.|+..+.+ +.  |+++|+.++..
T Consensus       255 ~~La~~~~~~g~~~I~~~d~~tg~----------~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~  323 (429)
T PRK03629        255 SKLAFALSKTGSLNLYVMDLASGQ----------I-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP  323 (429)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCC----------E-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence            86666656555  48888886432          1 1122233456789999999988877654 44  55557766644


Q ss_pred             EEEEeccCCCeEEEEEccCCCEEEEeeCC---CcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCc---E
Q 004214          415 VVTFRGHKRGIWSVEFSPVDQVVITASGD---KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL---V  488 (768)
Q Consensus       415 ~~~~~~~~~~v~~v~~s~~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~---i  488 (768)
                       ..+..+........|+|+|+.|+..+.+   ..|.+||+.++... .+... .......|+|||++|+.++.++.   +
T Consensus       324 -~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l  400 (429)
T PRK03629        324 -QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVL  400 (429)
T ss_pred             -EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEE
Confidence             3344344556778999999998876543   35889999887643 33321 22346789999999999888764   6


Q ss_pred             EEEECCCCeEEEEeccCCCcEEEEEEcC
Q 004214          489 KLWTVRTGECIATYDKHEDKIWALAVGK  516 (768)
Q Consensus       489 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~  516 (768)
                      .++++ +|.....+.+|.+.+...+|+|
T Consensus       401 ~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        401 NLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             EEEEC-CCCCeEECccCCCCcCCcccCC
Confidence            77777 5666677777888898899987

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.58  E-value=4.3e-13  Score=127.09  Aligned_cols=226  Identities=15%  Similarity=0.162  Sum_probs=167.8

Q ss_pred             eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce----eeeeeeCCccceEEEeeeeecCCCEEEEEEeCC--C
Q 004214          234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS----CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--N  307 (768)
Q Consensus       234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d--g  307 (768)
                      .......+|..++..   +..|++|..+|.+.+|....+.    ....+..+ ..+..+.  -.+....++++|+..  .
T Consensus       100 ~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r--~~~~~p~Iva~GGke~~n  173 (412)
T KOG3881|consen  100 TVSLGTKSIKGLKLA---DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVR--QTDTDPYIVATGGKENIN  173 (412)
T ss_pred             ccccccccccchhhc---CCEEEEEecCCcEEEEeccCCccccccceeeecC-Cceeeec--cCCCCCceEecCchhccc
Confidence            344455566666653   3578888999999999988443    22233333 3344444  445556668889999  8


Q ss_pred             eEEEEeCCCceEEEeeeccc---------CcEEEEEEecCC-CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee
Q 004214          308 SVRLWDSESRCCVGVGTGHM---------GAVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA  377 (768)
Q Consensus       308 ~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  377 (768)
                      .+.+||++..+.+..-+.-.         -.++++.|.+.. ...|++++.-+.+++||.+..         ..+...+.
T Consensus       174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q---------RRPV~~fd  244 (412)
T KOG3881|consen  174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ---------RRPVAQFD  244 (412)
T ss_pred             ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc---------CcceeEec
Confidence            99999999886665443211         235677787651 346999999999999999843         33555556


Q ss_pred             ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEE-EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce
Q 004214          378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC  456 (768)
Q Consensus       378 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~  456 (768)
                      ....+++++...|.++++++|..-|.+..||++.++.... +.+..+.|+++..+|.++++++++-|+.|||+|+.+.++
T Consensus       245 ~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  245 FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             cccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence            6678999999999999999999999999999999998887 889999999999999999999999999999999998776


Q ss_pred             eEEeecCCCcEEEEEEEeC
Q 004214          457 LKTFEGHTSSVLRASFLTR  475 (768)
Q Consensus       457 ~~~~~~~~~~v~~~~~s~~  475 (768)
                      +.... -...++++.+.++
T Consensus       325 l~kvY-vKs~lt~il~~~~  342 (412)
T KOG3881|consen  325 LHKVY-VKSRLTFILLRDD  342 (412)
T ss_pred             hhhhh-hhccccEEEecCC
Confidence            65543 2334455555443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=2.9e-14  Score=140.16  Aligned_cols=230  Identities=16%  Similarity=0.232  Sum_probs=168.1

Q ss_pred             eEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeee-eCCccceEEEeeeeecCCCEEEEEEeCCC
Q 004214          229 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSKDN  307 (768)
Q Consensus       229 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~~~l~~~~~dg  307 (768)
                      +.....+.||.+.|.++.|+. ++.+|++|+.|-.+.|||.-..+.+..+ .+|...|.|+.+.....+. ++++|..|.
T Consensus        40 L~lE~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnr-iv~sgAgDk  117 (758)
T KOG1310|consen   40 LDLEAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNR-IVLSGAGDK  117 (758)
T ss_pred             cchhhhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCe-EEEeccCcc
Confidence            344567889999999999984 8899999999999999999877777665 7899999999955444444 599999999


Q ss_pred             eEEEEeCCC----------ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee
Q 004214          308 SVRLWDSES----------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA  377 (768)
Q Consensus       308 ~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  377 (768)
                      .|+++|+..          ......+..|...|..++..|++++.+.+++.||+++-+|++...................
T Consensus       118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~  197 (758)
T KOG1310|consen  118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN  197 (758)
T ss_pred             eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence            999999984          2345556789999999999999999999999999999999986422111000000000111


Q ss_pred             ccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCC--------Cc----------eEEEE-eccC-----------CCeE
Q 004214          378 AHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPD--------LV----------SVVTF-RGHK-----------RGIW  426 (768)
Q Consensus       378 ~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~--------~~----------~~~~~-~~~~-----------~~v~  426 (768)
                      ..--...+++++| +..+|++|+.|-..++||.+.        +.          ++.-+ .+|-           ..++
T Consensus       198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t  277 (758)
T KOG1310|consen  198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCT  277 (758)
T ss_pred             hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeE
Confidence            1123467899999 567899999999999999421        11          11111 1221           1256


Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214          427 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF  460 (768)
Q Consensus       427 ~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~  460 (768)
                      -+.|+|+|.-|++.-..-.|+++|+..++....+
T Consensus       278 ~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  278 YVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             EEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            6889999977766666678999999887765544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.57  E-value=3.1e-13  Score=124.98  Aligned_cols=150  Identities=19%  Similarity=0.299  Sum_probs=113.6

Q ss_pred             EEEEEccCCCEEEEEeC---C-------CcEEEEeCCC-CceEEEEec-cCCCeEEEEEccCCCEEEEe--eCCCcEEEE
Q 004214          384 NSLAVAPNDSLVCTGSQ---D-------RTACVWRLPD-LVSVVTFRG-HKRGIWSVEFSPVDQVVITA--SGDKTIKIW  449 (768)
Q Consensus       384 ~~~~~s~~~~~l~~~~~---d-------g~i~i~d~~~-~~~~~~~~~-~~~~v~~v~~s~~~~~l~t~--~~d~~i~iw  449 (768)
                      ..+.|+|+|.+|++-..   |       |...+|.++. ......+.- ..++|.+++|+|+|+.+++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46788999987776544   1       2345555522 233444433 34579999999999987654  456799999


Q ss_pred             eCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeC---CCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC
Q 004214          450 SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA---DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS  526 (768)
Q Consensus       450 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~  526 (768)
                      |++ ++.+..+.  ...+..+.|+|+|++|++++.   .|.|.+||+++.+.+.+.. |. .++.++|+|+|++|+++..
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEe
Confidence            996 77777774  567788999999999999875   3679999999999998876 44 4789999999999999874


Q ss_pred             ------CCcEEEEEcCCH
Q 004214          527 ------DALVNLWHDSTA  538 (768)
Q Consensus       527 ------dg~v~vw~~~~~  538 (768)
                            |..++||+....
T Consensus       164 ~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             ccceeccccEEEEEecCe
Confidence                  788999998643

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=6e-12  Score=118.05  Aligned_cols=305  Identities=14%  Similarity=0.154  Sum_probs=187.9

Q ss_pred             CCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCc-cceeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe
Q 004214           30 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH-FSRVTSMAITSDGS-TLISAGRDKVVNLWDLRDYS  107 (768)
Q Consensus        30 ~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h-~~~V~~l~fs~d~~-~L~s~~~dg~i~vWd~~~~~  107 (768)
                      .-.+..++|++.-  ..+|++..|-.|++||-.. ++...++.. ...|++++|-|.+. .|+.++.. -|++|.....-
T Consensus        98 ~~dlr~~aWhqH~--~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tl  173 (445)
T KOG2139|consen   98 EIDLRGVAWHQHI--IAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTL  173 (445)
T ss_pred             hcceeeEeechhh--hhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccc
Confidence            3456778999954  4489999999999999766 666666643 34799999999654 55566654 49999764311


Q ss_pred             eeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeeccccc
Q 004214          108 CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMD  187 (768)
Q Consensus       108 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~  187 (768)
                      ....                                         -+.                                
T Consensus       174 n~~r-----------------------------------------~~~--------------------------------  180 (445)
T KOG2139|consen  174 NANR-----------------------------------------NIR--------------------------------  180 (445)
T ss_pred             cccc-----------------------------------------ccc--------------------------------
Confidence            0000                                         000                                


Q ss_pred             CcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004214          188 DSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY  267 (768)
Q Consensus       188 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~  267 (768)
                                          ....+...+                .+-.|| .+|+++.|.++...++-++-.+..|.||
T Consensus       181 --------------------~~s~~~~qv----------------l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iW  223 (445)
T KOG2139|consen  181 --------------------MMSTHHLQV----------------LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIW  223 (445)
T ss_pred             --------------------cccccchhh----------------eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEE
Confidence                                000000000                011122 5788999986544444444567899999


Q ss_pred             ECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEe
Q 004214          268 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS  347 (768)
Q Consensus       268 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  347 (768)
                      |..++..+......-+.+.-+.  ++|++.. |++++-|+..++|+....-.........+.|...+|+|.|+.+|++.+
T Consensus       224 dpdtg~~~pL~~~glgg~slLk--wSPdgd~-lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  224 DPDTGQKIPLIPKGLGGFSLLK--WSPDGDV-LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             cCCCCCcccccccCCCceeeEE--EcCCCCE-EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc
Confidence            9999988766655566676776  7787776 888899999999965433222222334459999999999998888887


Q ss_pred             CCCeEEEEeCCCCCCCCccccccceee---------Ee---eccCCCeEEEEEccCCCEEEEEeCCCc--------EEEE
Q 004214          348 SDHTIKVWSFDGLSDDAEQPMNLKAKA---------VV---AAHGKDINSLAVAPNDSLVCTGSQDRT--------ACVW  407 (768)
Q Consensus       348 ~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~--------i~i~  407 (768)
                      ....+.-............+...+...         ..   .--.+.+.+++|+|.|.++|+.-..+.        |.+|
T Consensus       301 gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~f  380 (445)
T KOG2139|consen  301 GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRF  380 (445)
T ss_pred             CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhh
Confidence            766554444332221111111111111         00   112467889999999999999766543        6677


Q ss_pred             eCCCCceEEEEe-c--cCCCeEEEEEcc---CCCEEEEeeCCCcEEEEeC
Q 004214          408 RLPDLVSVVTFR-G--HKRGIWSVEFSP---VDQVVITASGDKTIKIWSI  451 (768)
Q Consensus       408 d~~~~~~~~~~~-~--~~~~v~~v~~s~---~~~~l~t~~~d~~i~iwd~  451 (768)
                      |.+..-.+.-.. +  ...+...++|+|   ++.+|..+-..|.+.-|++
T Consensus       381 dtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  381 DTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             cccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence            765543332221 1  112244566665   4667777777788877776

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=6.8e-12  Score=124.13  Aligned_cols=232  Identities=10%  Similarity=0.112  Sum_probs=140.2

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC-----CeEEEEeCCCCCCCCcc
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQ  366 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~  366 (768)
                      ++.+++. +|--.. ..|.||+..+..++..-.-.-..|....|+|.+. +|+--+..     ..+.+-.+...      
T Consensus       313 WS~DdKy-~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~-llAYwtpe~~~~parvtL~evPs~------  383 (698)
T KOG2314|consen  313 WSHDDKY-FARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSN-LLAYWTPETNNIPARVTLMEVPSK------  383 (698)
T ss_pred             eccCCce-eEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcc-eEEEEcccccCCcceEEEEecCcc------
Confidence            4444443 554443 5788998877655554444556788889999844 44322111     12333333321      


Q ss_pred             ccccceeeEeeccCCCeEEEEEccCCCEEEEEeC----------CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCE
Q 004214          367 PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ----------DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV  436 (768)
Q Consensus       367 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~  436 (768)
                          .......-+.-.=..+-|-.+|.+|+.--.          -..+.|+.++........-.-...|...+|-|.|..
T Consensus       384 ----~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdk  459 (698)
T KOG2314|consen  384 ----REIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDK  459 (698)
T ss_pred             ----ceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCe
Confidence                122222222222234667778888876321          123556665544333222235678899999999988


Q ss_pred             EEEeeC---CCcEEEEeCCC----CceeEEeecCCCcEEEEEEEeCCCEEEEEe---CCCcEEEEECCCCeEEEEeccCC
Q 004214          437 VITASG---DKTIKIWSISD----GSCLKTFEGHTSSVLRASFLTRGAQIVSCG---ADGLVKLWTVRTGECIATYDKHE  506 (768)
Q Consensus       437 l~t~~~---d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~  506 (768)
                      +++-+.   ..++.+|.+.+    .+++..+..  ...+.+.|+|.|++++.+.   ..|.+.++|..-..+..+-....
T Consensus       460 F~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh  537 (698)
T KOG2314|consen  460 FAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH  537 (698)
T ss_pred             EEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc
Confidence            877554   35788898763    234455542  5667899999999987764   46889999987544433332233


Q ss_pred             CcEEEEEEcCCCCEEEEEeCC------CcEEEEEcCCH
Q 004214          507 DKIWALAVGKKTEMFATGGSD------ALVNLWHDSTA  538 (768)
Q Consensus       507 ~~v~~l~~s~~~~~l~s~~~d------g~v~vw~~~~~  538 (768)
                      ...+.+.|.|.|+|++|+++-      .--++|++...
T Consensus       538 ~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr  575 (698)
T KOG2314|consen  538 FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR  575 (698)
T ss_pred             cccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence            456778999999999999863      33577877653

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.55  E-value=8e-08  Score=109.45  Aligned_cols=399  Identities=15%  Similarity=0.120  Sum_probs=228.7

Q ss_pred             CCCcEEEEEEeeCCCccEEEEEeCCCcEEEE----ECCCC--eeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214           29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVW----DLLAK--KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD  102 (768)
Q Consensus        29 h~~~V~~l~~spd~~~~~l~sg~~dg~I~iW----d~~~~--~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd  102 (768)
                      ..+.|.++.|-++...  ++.+..+|.|.+.    |..+.  +.+..+   .++|.+++||||+..|+.+..++++.+-+
T Consensus        74 ~~~~ivs~~yl~d~~~--l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen   74 PNDKIVSFQYLADSES--LCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMT  148 (928)
T ss_pred             CCCcEEEEEeccCCCc--EEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence            3468999999998877  8888889999999    54433  334443   46799999999999999999998888764


Q ss_pred             CCCCeeeeeeeccee------EeeEEecCCCCCccccccc--------------------cchhhhhcccCCcceEEEEe
Q 004214          103 LRDYSCKLTVPTYEM------VEAVCAIPPGSAFDSFLSS--------------------YNQQTIKKKRRSLEIHFITV  156 (768)
Q Consensus       103 ~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~  156 (768)
                       .+...+...+....      ...+.|-.....+-...+.                    .........-+.++.+|++.
T Consensus       149 -~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs  227 (928)
T PF04762_consen  149 -RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS  227 (928)
T ss_pred             -ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence             45555544443221      1222222222211111111                    11111122233455566665


Q ss_pred             eC------CcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEe---cCeEEEEeeccCcccce
Q 004214          157 GE------RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA---DQQLLLYTTVEVPEKKM  227 (768)
Q Consensus       157 ~~------~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~~~~~~~~~~~~~  227 (768)
                      +-      ...+|+|+-++. +.....          ...+.-..+++.|.++.+++...   ...+.+|......-..+
T Consensus       228 s~~~~~~~~R~iRVy~ReG~-L~stSE----------~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF  296 (928)
T PF04762_consen  228 SVEPETGSRRVIRVYSREGE-LQSTSE----------PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEF  296 (928)
T ss_pred             EEEcCCCceeEEEEECCCce-EEeccc----------cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeE
Confidence            43      357888887733 221111          11123356678888887766654   35677776655443332


Q ss_pred             eeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee--eeeeeC-CccceEEEeeeeecCCCEEEEEEe
Q 004214          228 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC--SYVLAG-HSEIVLCLDTCALSSGKILIVTGS  304 (768)
Q Consensus       228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~-~~~~v~~l~~~~~~~~~~~l~~~~  304 (768)
                      .++.    ......|..+.|++ ++..||+...+. |++|-..+..-  .+.+.. ....+..+.  |.+.....|...+
T Consensus       297 ~l~~----~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~--Wdpe~p~~L~v~t  368 (928)
T PF04762_consen  297 TLRF----DPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVK--WDPEKPLRLHVLT  368 (928)
T ss_pred             ecCC----CCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceE--ECCCCCCEEEEEe
Confidence            2221    23456789999985 778888877644 99999877542  222221 122233344  5565555566666


Q ss_pred             CCCeEEEEeCC----Cc--------eEEEeee-----------------------cccCcEEEEEEecCCCcEEEEEeCC
Q 004214          305 KDNSVRLWDSE----SR--------CCVGVGT-----------------------GHMGAVGAVAFSKKLQNFLVSGSSD  349 (768)
Q Consensus       305 ~dg~i~iwd~~----~~--------~~~~~~~-----------------------~~~~~v~~~~~~~~~~~~l~s~~~d  349 (768)
                      .+|.+..+++.    .+        ..+....                       .-..+|.+++|++++. .+++-..|
T Consensus       369 ~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~-~~avl~~d  447 (928)
T PF04762_consen  369 SNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNS-RFAVLTSD  447 (928)
T ss_pred             cCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCC-eEEEEECC
Confidence            66666555421    10        0111111                       1346799999999866 48889999


Q ss_pred             CeEEEEeCCCCCCCCc-cc-cccce------eeEeeccCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCc---eE
Q 004214          350 HTIKVWSFDGLSDDAE-QP-MNLKA------KAVVAAHGKDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLV---SV  415 (768)
Q Consensus       350 g~i~iwd~~~~~~~~~-~~-~~~~~------~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~---~~  415 (768)
                      |.+.+|.......... .+ .....      ..........+..++|..+..+++....+   ..+.+++.....   ..
T Consensus       448 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  527 (928)
T PF04762_consen  448 GSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASV  527 (928)
T ss_pred             CCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeE
Confidence            9999998654432210 00 00000      00111234567888888887777776664   578888874332   23


Q ss_pred             EEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 004214          416 VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD  453 (768)
Q Consensus       416 ~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~  453 (768)
                      .....-...+..+...++...++.-..+|.+...+...
T Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~  565 (928)
T PF04762_consen  528 ESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDG  565 (928)
T ss_pred             EEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCC
Confidence            33333445566666666655466666788888766544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=1.4e-12  Score=138.10  Aligned_cols=238  Identities=13%  Similarity=0.097  Sum_probs=155.8

Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEe-CC--CeEEEEeCCCceEEEeeecccCcEEEEEEecC
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS-KD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK  338 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  338 (768)
                      ..|.++|... .....+..+...+.+..  ++|+++. |+..+ .+  ..|.+||+.+++.... ....+.+.+..|+|+
T Consensus       176 ~~L~~~D~dG-~~~~~l~~~~~~v~~p~--wSPDG~~-la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPD  250 (427)
T PRK02889        176 YQLQISDADG-QNAQSALSSPEPIISPA--WSPDGTK-LAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPD  250 (427)
T ss_pred             cEEEEECCCC-CCceEeccCCCCcccce--EcCCCCE-EEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCC
Confidence            4677777643 33344556667777776  7788877 54444 22  4699999998876443 333455678999999


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-CCcEEEEeC--CCCceE
Q 004214          339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRTACVWRL--PDLVSV  415 (768)
Q Consensus       339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~--~~~~~~  415 (768)
                      |+.++++.+.+|...+|.++....         ....+..+........|+|||+.|+..+. +|...+|.+  .++...
T Consensus       251 G~~la~~~~~~g~~~Iy~~d~~~~---------~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~  321 (427)
T PRK02889        251 GRTLAVALSRDGNSQIYTVNADGS---------GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ  321 (427)
T ss_pred             CCEEEEEEccCCCceEEEEECCCC---------CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE
Confidence            987667788888877776542211         11122223344567889999998886654 455566654  444332


Q ss_pred             EEEeccCCCeEEEEEccCCCEEEEeeCCC---cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCC---cEE
Q 004214          416 VTFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG---LVK  489 (768)
Q Consensus       416 ~~~~~~~~~v~~v~~s~~~~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~  489 (768)
                       .+..+.......+|+|+|++|+..+.++   .|.+||+.+++... +.. ........|+|||++|+.++.++   .+.
T Consensus       322 -~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~  398 (427)
T PRK02889        322 -RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLA  398 (427)
T ss_pred             -EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEE
Confidence             2222233345678999999998776554   69999998876543 332 23346789999999988777644   355


Q ss_pred             EEECCCCeEEEEeccCCCcEEEEEEcCC
Q 004214          490 LWTVRTGECIATYDKHEDKIWALAVGKK  517 (768)
Q Consensus       490 iwd~~~~~~~~~~~~~~~~v~~l~~s~~  517 (768)
                      +.++ +|.....+..+.+.+...+|+|-
T Consensus       399 ~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        399 AVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            5566 56666666667777788888874

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=1.8e-12  Score=137.74  Aligned_cols=235  Identities=16%  Similarity=0.097  Sum_probs=157.6

Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeC---CCeEEEEeCCCceEEEeeecccCcEEEEEEecC
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK---DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK  338 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  338 (768)
                      ..|.+||..... ...+..+...+.+..  ++++++. |+..+.   ...|++||+.+++.... ....+...+..|+|+
T Consensus       184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~--wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpD  258 (433)
T PRK04922        184 YALQVADSDGYN-PQTILRSAEPILSPA--WSPDGKK-LAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPD  258 (433)
T ss_pred             EEEEEECCCCCC-ceEeecCCCcccccc--CCCCCCE-EEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCC
Confidence            368889886443 345556666777776  7788877 555442   34799999988765433 334455567899999


Q ss_pred             CCcEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-CCc--EEEEeCCCCc
Q 004214          339 LQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRT--ACVWRLPDLV  413 (768)
Q Consensus       339 ~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~--i~i~d~~~~~  413 (768)
                      |+.++++.+.+|  .|.+||+..+.           ......+.......+|+|||+.|+.++. +|.  |+++++.+++
T Consensus       259 G~~l~~~~s~~g~~~Iy~~d~~~g~-----------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~  327 (433)
T PRK04922        259 GRRLALTLSRDGNPEIYVMDLGSRQ-----------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS  327 (433)
T ss_pred             CCEEEEEEeCCCCceEEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            987667777666  58888887542           1112233344567899999998887764 444  6777776665


Q ss_pred             eEEEEeccCCCeEEEEEccCCCEEEEeeCCC---cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCC---Cc
Q 004214          414 SVVTFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---GL  487 (768)
Q Consensus       414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~  487 (768)
                      ... +..+.......+|+|+|+.|+..+.++   .|.+||+.+++.. .+. +........|+|||++++..+.+   +.
T Consensus       328 ~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~  404 (433)
T PRK04922        328 AER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGV  404 (433)
T ss_pred             eEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceE
Confidence            432 222334455789999999998765433   6999999887654 333 33345567999999988776653   35


Q ss_pred             EEEEECCCCeEEEEeccCCCcEEEEEEcC
Q 004214          488 VKLWTVRTGECIATYDKHEDKIWALAVGK  516 (768)
Q Consensus       488 i~iwd~~~~~~~~~~~~~~~~v~~l~~s~  516 (768)
                      |.++++. |.....+..+.+.+...+|+|
T Consensus       405 L~~~~~~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        405 LAAVSTD-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EEEEECC-CCceEEcccCCCCCCCCccCC
Confidence            7888874 445566655667777778876

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.53  E-value=1.2e-12  Score=120.99  Aligned_cols=158  Identities=13%  Similarity=0.277  Sum_probs=113.7

Q ss_pred             EEEEEecCCCcEEEEEeC---------CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE--e
Q 004214          331 GAVAFSKKLQNFLVSGSS---------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG--S  399 (768)
Q Consensus       331 ~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~  399 (768)
                      ..+.|+|.|..+++....         -|...+|.++...        ............+|.+++|+|+|+.+++.  .
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~--------~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~   80 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN--------IPVESIELKKEGPIHDVAWSPNGNEFAVIYGS   80 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC--------CccceeeccCCCceEEEEECcCCCEEEEEEcc
Confidence            356788887755555441         2345566554221        11111222234579999999999987654  3


Q ss_pred             CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC---CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC
Q 004214          400 QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG---DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG  476 (768)
Q Consensus       400 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  476 (768)
                      .++.|.+||++ ++.+..+.  ...+..+.|+|+|++|++|+.   .|.|.+||.++.+.+.++. |. .++.+.|+|+|
T Consensus        81 ~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdG  155 (194)
T PF08662_consen   81 MPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDG  155 (194)
T ss_pred             CCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCC
Confidence            56799999996 66666654  567889999999999999874   3679999999999988876 33 47899999999


Q ss_pred             CEEEEEeC------CCcEEEEECCCCeEEEEe
Q 004214          477 AQIVSCGA------DGLVKLWTVRTGECIATY  502 (768)
Q Consensus       477 ~~l~s~~~------dg~i~iwd~~~~~~~~~~  502 (768)
                      ++|+++..      |..++||+. +|+.+...
T Consensus       156 r~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~  186 (194)
T PF08662_consen  156 RYLATATTSPRLRVDNGFKIWSF-QGRLLYKK  186 (194)
T ss_pred             CEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence            99998875      678899997 56666554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.51  E-value=1.9e-09  Score=105.13  Aligned_cols=220  Identities=13%  Similarity=0.089  Sum_probs=149.1

Q ss_pred             CceEEEEecCeEEEEeeccCcccceeeEEEee----ecccCCceeEEE-EecCCCCEEEEEeCCCcEEEEECCCceeeee
Q 004214          203 QGLLCVTADQQLLLYTTVEVPEKKMELILSKR----LVGYNEEILDLK-FLGEEEQYLAVATNIEQVQVYDLSSMSCSYV  277 (768)
Q Consensus       203 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~-~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~  277 (768)
                      ..-++-...|.|++|+.....-.+....+...    ....-.+.--+. |...++.+++..+. |+..+.+...+-.+. 
T Consensus       278 GkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq-  355 (668)
T COG4946         278 GKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQ-  355 (668)
T ss_pred             CcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEE-
Confidence            34456677789999988776544333221111    111111111122 45567888888877 888887766554432 


Q ss_pred             eeCCccceEEEeeeeecCCCEEEEEEeCCC-eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEe
Q 004214          278 LAGHSEIVLCLDTCALSSGKILIVTGSKDN-SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS  356 (768)
Q Consensus       278 ~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  356 (768)
                       -+|...|.-..  ...+... ++.|..|| .+-++|..+++... +...-+.|.++..+++|+ +++.+.....+.+.|
T Consensus       356 -v~~~~~VrY~r--~~~~~e~-~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK-~~vvaNdr~el~vid  429 (668)
T COG4946         356 -VGKKGGVRYRR--IQVDPEG-DVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGK-KVVVANDRFELWVID  429 (668)
T ss_pred             -cCCCCceEEEE--EccCCcc-eEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCc-EEEEEcCceEEEEEE
Confidence             24455565554  4444454 88999999 99999999886544 456778999999999987 688888888888899


Q ss_pred             CCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC----cEEEEeCCCCceEEEEeccCCCeEEEEEcc
Q 004214          357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR----TACVWRLPDLVSVVTFRGHKRGIWSVEFSP  432 (768)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~  432 (768)
                      ++++.          ....-.....-|+.++|+|+++++|-+--+|    .|++||+..++...... ....=.+-+|.|
T Consensus       430 idngn----------v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~  498 (668)
T COG4946         430 IDNGN----------VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP  498 (668)
T ss_pred             ecCCC----------eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCC
Confidence            98653          3334444567799999999999999988776    68999998887655433 333345667889


Q ss_pred             CCCEEEEee
Q 004214          433 VDQVVITAS  441 (768)
Q Consensus       433 ~~~~l~t~~  441 (768)
                      ++++|.--+
T Consensus       499 d~ryLYfLs  507 (668)
T COG4946         499 DGRYLYFLS  507 (668)
T ss_pred             CCcEEEEEe
Confidence            998876544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=1.1e-11  Score=132.03  Aligned_cols=236  Identities=12%  Similarity=0.010  Sum_probs=158.6

Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEe--CCCeEEEEeCCCceEEEeeecccCcEEEEEEecCC
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS--KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL  339 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  339 (768)
                      ..|.++|..... ...+..|...+.+..  ++++++.++++..  .+..|.+||+.+++.. .+..+.+.+.+.+|+|+|
T Consensus       182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~--wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG  257 (435)
T PRK05137        182 KRLAIMDQDGAN-VRYLTDGSSLVLTPR--FSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDG  257 (435)
T ss_pred             eEEEEECCCCCC-cEEEecCCCCeEeeE--ECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCC
Confidence            478888875444 445667777888887  7888887444332  2468999999888654 344566677889999999


Q ss_pred             CcEEEEEeCCCe--EEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCce
Q 004214          340 QNFLVSGSSDHT--IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVS  414 (768)
Q Consensus       340 ~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~  414 (768)
                      +.++++.+.++.  |.+||+..+.           ...+..+........|+|||+.|+..+. +|  .|+++|+.++..
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~-----------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~  326 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGT-----------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP  326 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCc-----------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence            877777777766  6666776431           1222334445667899999998887764 33  688888876654


Q ss_pred             EEEEeccCCCeEEEEEccCCCEEEEeeCC---CcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCC------
Q 004214          415 VVTFRGHKRGIWSVEFSPVDQVVITASGD---KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD------  485 (768)
Q Consensus       415 ~~~~~~~~~~v~~v~~s~~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------  485 (768)
                      . .+..+...+....|+|+|+.|+..+.+   ..|.+||+..+. ...+. ....+....|+|||+.|+..+.+      
T Consensus       327 ~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~  403 (435)
T PRK05137        327 R-RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGA  403 (435)
T ss_pred             E-EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCc
Confidence            3 343345566778999999999876543   368889985544 33333 22346778999999988765543      


Q ss_pred             CcEEEEECCCCeEEEEeccCCCcEEEEEEcCC
Q 004214          486 GLVKLWTVRTGECIATYDKHEDKIWALAVGKK  517 (768)
Q Consensus       486 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  517 (768)
                      ..+.++|+..+.. ..+. ..+.+...+|+|-
T Consensus       404 ~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        404 PKLYTVDLTGRNE-REVP-TPGDASDPAWSPL  433 (435)
T ss_pred             ceEEEEECCCCce-EEcc-CCCCccCcccCCC
Confidence            2577888766544 4444 3445666777763

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=1.2e-11  Score=131.67  Aligned_cols=216  Identities=9%  Similarity=-0.015  Sum_probs=147.9

Q ss_pred             CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEe--CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeE
Q 004214          307 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN  384 (768)
Q Consensus       307 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~  384 (768)
                      ..|.++|..... ...+..|...+.+.+|+|+|+.++++..  .+..|.+||+..+.           ...+..+...+.
T Consensus       182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-----------~~~l~~~~g~~~  249 (435)
T PRK05137        182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ-----------RELVGNFPGMTF  249 (435)
T ss_pred             eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc-----------EEEeecCCCccc
Confidence            378888886543 3445677889999999999885444332  34689999987542           112233455677


Q ss_pred             EEEEccCCCEEE-EEeCCCc--EEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC-C--CcEEEEeCCCCceeE
Q 004214          385 SLAVAPNDSLVC-TGSQDRT--ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-D--KTIKIWSISDGSCLK  458 (768)
Q Consensus       385 ~~~~s~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d--~~i~iwd~~~~~~~~  458 (768)
                      +.+|+|||+.|+ +.+.++.  |++||+.++.. ..+..+........|+|||+.|+..+. +  ..|++||+..+.. .
T Consensus       250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~  327 (435)
T PRK05137        250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-R  327 (435)
T ss_pred             CcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-E
Confidence            889999998776 4455554  77778887755 345556666778999999998887663 3  3688889876654 3


Q ss_pred             EeecCCCcEEEEEEEeCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC------Cc
Q 004214          459 TFEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD------AL  529 (768)
Q Consensus       459 ~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d------g~  529 (768)
                      .+..+...+....|+|+|++|+..+.+   ..|.+||+.++.. ..+. ....+....|+|||+.|+..+.+      ..
T Consensus       328 ~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~  405 (435)
T PRK05137        328 RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPK  405 (435)
T ss_pred             EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcce
Confidence            443345566778999999999876653   2688888765543 3332 23346778999999998765543      24


Q ss_pred             EEEEEcCCH
Q 004214          530 VNLWHDSTA  538 (768)
Q Consensus       530 v~vw~~~~~  538 (768)
                      |.++++...
T Consensus       406 L~~~dl~g~  414 (435)
T PRK05137        406 LYTVDLTGR  414 (435)
T ss_pred             EEEEECCCC
Confidence            677776543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=2.6e-11  Score=128.22  Aligned_cols=214  Identities=13%  Similarity=0.047  Sum_probs=144.3

Q ss_pred             eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEe--CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214          308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS  385 (768)
Q Consensus       308 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  385 (768)
                      .|.+||........ +..+...+.+.+|+|+|+.++++..  .+..+.+|++..+..           .........+..
T Consensus       180 ~l~~~d~dg~~~~~-lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-----------~~l~~~~~~~~~  247 (429)
T PRK03629        180 ELRVSDYDGYNQFV-VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-----------RQVASFPRHNGA  247 (429)
T ss_pred             eEEEEcCCCCCCEE-eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-----------EEccCCCCCcCC
Confidence            68899987654433 3446678999999999885444432  345788999875421           111112233456


Q ss_pred             EEEccCCCEEEEE-eCCC--cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCC-C--cEEEEeCCCCceeEE
Q 004214          386 LAVAPNDSLVCTG-SQDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD-K--TIKIWSISDGSCLKT  459 (768)
Q Consensus       386 ~~~s~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d-~--~i~iwd~~~~~~~~~  459 (768)
                      .+|+|||+.|+.. +.+|  .|++||+.+++... +..+...+....|+|+|+.|+..+.+ +  .|.++|+.++.. ..
T Consensus       248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~  325 (429)
T PRK03629        248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QR  325 (429)
T ss_pred             eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EE
Confidence            8999999988865 4455  58899998876544 34345567889999999988776654 4  455557766654 34


Q ss_pred             eecCCCcEEEEEEEeCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCc---EEEE
Q 004214          460 FEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL---VNLW  533 (768)
Q Consensus       460 ~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~---v~vw  533 (768)
                      +..+........|+|||++|+..+.+   ..|.+||+.+++... +.. ........|+|||++|+.++.++.   +.++
T Consensus       326 lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~  403 (429)
T PRK03629        326 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLV  403 (429)
T ss_pred             eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence            44344455678999999999876553   358889998886443 322 122346789999999999888765   6667


Q ss_pred             EcCC
Q 004214          534 HDST  537 (768)
Q Consensus       534 ~~~~  537 (768)
                      ++..
T Consensus       404 ~~~G  407 (429)
T PRK03629        404 STDG  407 (429)
T ss_pred             ECCC
Confidence            6643

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.49  E-value=1e-10  Score=125.03  Aligned_cols=395  Identities=17%  Similarity=0.197  Sum_probs=223.7

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCc--EEEE--EEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCcccee
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGV--VSSI--LFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRV   77 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~--V~~l--~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V   77 (768)
                      .++.+..+..+.+||...+.....+......  .+++  -+++  ...++++|+.-+.|.+|++..-+.-..+.+|.+.|
T Consensus       101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~--~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i  178 (967)
T KOG0974|consen  101 KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA--EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI  178 (967)
T ss_pred             eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC--cEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence            5788889999999999888866665532221  1222  2344  44569999999999999997333333689999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeee--eeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEE
Q 004214           78 TSMAITSDGSTLISAGRDKVVNLWDLRDYSCKL--TVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT  155 (768)
Q Consensus        78 ~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (768)
                      .++.|+.||.+++|++.|.++++|++++.+...  -+.+...+..+++.|.                         .+++
T Consensus       179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-------------------------~i~t  233 (967)
T KOG0974|consen  179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-------------------------RIIT  233 (967)
T ss_pred             EEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-------------------------eeEE
Confidence            999999999999999999999999999988665  3455566788888775                         6899


Q ss_pred             eeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeee
Q 004214          156 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL  235 (768)
Q Consensus       156 ~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~  235 (768)
                      +++|-+.++|+.+...+..          -.....+.+..+...+.....++++.|+.+++|+............  ...
T Consensus       234 ~gedctcrvW~~~~~~l~~----------y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~~~~--~~~  301 (967)
T KOG0974|consen  234 VGEDCTCRVWGVNGTQLEV----------YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGHVEQ--SSL  301 (967)
T ss_pred             eccceEEEEEecccceehh----------hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccccceee--eee
Confidence            9999999999776654321          1112235677788888888889999999999998765432110000  000


Q ss_pred             cccCCceeEEEEe--------cCCCCEEEEEeC--CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeC
Q 004214          236 VGYNEEILDLKFL--------GEEEQYLAVATN--IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK  305 (768)
Q Consensus       236 ~~~~~~i~~~~~~--------~~~~~~l~~~~~--~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~  305 (768)
                      ........+..|.        ...+..++..+.  .+.+...+..++         ...+.      ......+++.++.
T Consensus       302 ~~s~~kl~~~~f~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~---------~~i~~------~~~~~~~v~~~~~  366 (967)
T KOG0974|consen  302 LSSIVKLKDDQFVKCDTLLNFANHGGKLSILGNKGEKELITFESDSM---------LRIIF------SCTNDDWVAHMSN  366 (967)
T ss_pred             ecchhhhcceeeeehHHHHHHHhcCCeEeecccccccceeeeeeccC---------cccee------hccccceeeeccC
Confidence            0000000000110        001111222221  111111111110         01111      1112223555555


Q ss_pred             CCeEEEEeCCCceEEEeeeccc----CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccce-eeEeeccC
Q 004214          306 DNSVRLWDSESRCCVGVGTGHM----GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKA-KAVVAAHG  380 (768)
Q Consensus       306 dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~  380 (768)
                      .+.+.+.-............|.    .+...++.-.    +..+-..+|..++|.....-........... ........
T Consensus       367 k~~~~v~~~~~~~~~~~~~~h~~~s~~~~~~~~~~~----~~~~~~~~g~~~~r~~~~~~~~~ad~~~i~~~~~f~~~~~  442 (967)
T KOG0974|consen  367 KGDIYVAWHQNTIVITTSSLHRKLSANPISQVCEAS----YVASKLIDGSIQVRNLSGSLESFADVLNIRSLKEFRLPFA  442 (967)
T ss_pred             CCcEEEEEeecccCccchhHHHHHhhCcccceeeee----eehhhccCCcchhhhhhcccccccceeEEeeeeeeccccC
Confidence            5555554433221111111111    1111111110    1222234556666654322111111111111 11123345


Q ss_pred             CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec---c----CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 004214          381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---H----KRGIWSVEFSPVDQVVITASGDKTIKIWSISD  453 (768)
Q Consensus       381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~----~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~  453 (768)
                      ..+.++.-.+.+..++.|+.-|.+.+|++..+....+..+   |    .+.+....--++.-++.+.+.||.+.++.+..
T Consensus       443 ~~~~~l~~~~~~~~~l~Gs~~g~lv~~~l~~~~~~~~~~~~~~~~~~~~~si~~~~~kdn~~~~~~~g~dg~~~~~~~~r  522 (967)
T KOG0974|consen  443 FRIPCLTSVVEDNLILIGSRHGELVLYNLDEPNDDIVLSLSRSHELDTGSSITCIRSKDNSAIFMTTGRDGYWSTIELIR  522 (967)
T ss_pred             CCCcceecccCcceEEEccCcCcEEEecCCCCCccceeeccCcccccccccEEEEecCCCcEEEEEecCCcEEEEEEEec
Confidence            6678888888888999999999999999876543322221   1    12344444344455677778888888887754


Q ss_pred             C
Q 004214          454 G  454 (768)
Q Consensus       454 ~  454 (768)
                      +
T Consensus       523 ~  523 (967)
T KOG0974|consen  523 G  523 (967)
T ss_pred             C
Confidence            4

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.48  E-value=9.2e-11  Score=115.37  Aligned_cols=372  Identities=14%  Similarity=0.113  Sum_probs=220.1

Q ss_pred             EEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccc
Q 004214           57 RVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS  136 (768)
Q Consensus        57 ~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  136 (768)
                      .+|+..+...-..+....-++..++|||.|.+|++....| |.+|.-..+..+..+. +..+..+.|+|.+..+......
T Consensus        15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~~~V~~~~fSP~~kYL~tw~~~   92 (561)
T COG5354          15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-HPDVKYLDFSPNEKYLVTWSRE   92 (561)
T ss_pred             EeecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee-cCCceecccCcccceeeeeccC
Confidence            4566555555555555666899999999999999988766 9999988877444443 4557788888888743321111


Q ss_pred             cchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEE
Q 004214          137 YNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL  216 (768)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~  216 (768)
                      .-.        .....+.--+.+..+.+||+.++.++....                                       
T Consensus        93 pi~--------~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~---------------------------------------  125 (561)
T COG5354          93 PII--------EPEIEISPFTSKNNVFVWDIASGMIVFSFN---------------------------------------  125 (561)
T ss_pred             Ccc--------ChhhccCCccccCceeEEeccCceeEeecc---------------------------------------
Confidence            000        000011111222245566655553321110                                       


Q ss_pred             EeeccCcccceeeEEEeeecccCCc--ee-EEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCC---ccceEEEee
Q 004214          217 YTTVEVPEKKMELILSKRLVGYNEE--IL-DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH---SEIVLCLDT  290 (768)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~--i~-~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~v~~l~~  290 (768)
                                          +...+  .. -+.|+- ++.++|-- -...+.++++ +.... ....+   ...+.... 
T Consensus       126 --------------------~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~-~~p~~~lr~~gi~dFs-  180 (561)
T COG5354         126 --------------------GISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIE-EHPFKNLRPVGILDFS-  180 (561)
T ss_pred             --------------------ccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccc-cCchhhccccceeeEE-
Confidence                                00001  11 233332 33333332 2357888886 32221 11111   12333333 


Q ss_pred             eeecC--CCEEEEE-----EeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEe----------CCCeEE
Q 004214          291 CALSS--GKILIVT-----GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS----------SDHTIK  353 (768)
Q Consensus       291 ~~~~~--~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~dg~i~  353 (768)
                       ++|.  +.. |+.     ++.++.+++|.+..+..+....-....-..+.|.+.|..+++-.-          ....+.
T Consensus       181 -isP~~n~~~-la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLy  258 (561)
T COG5354         181 -ISPEGNHDE-LAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLY  258 (561)
T ss_pred             -ecCCCCCce-EEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEE
Confidence             3333  222 232     456789999999877766654433333456777777764333221          124567


Q ss_pred             EEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceEEEEeccCCCeEEEEEc
Q 004214          354 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS--QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFS  431 (768)
Q Consensus       354 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s  431 (768)
                      ++++...           .........++|...+|.|.++.+++.+  .+..+.++|++..   ..+......=..+.|+
T Consensus       259 l~~~~e~-----------~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~~Pe~~rNT~~fs  324 (561)
T COG5354         259 LLRITER-----------SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFYFPEQKRNTIFFS  324 (561)
T ss_pred             EEeeccc-----------ccceeccccccceeeeecccCCceeEEecccccceeecccccc---eEEecCCccccccccc
Confidence            7776522           1111124568899999999887776654  6778999998876   2334455566778899


Q ss_pred             cCCCEEEEeeCC---CcEEEEeCCCCc-eeEEeecCCCcEEEEEEEeCCCEEEEEeC------CCcEEEEECCCCeEEEE
Q 004214          432 PVDQVVITASGD---KTIKIWSISDGS-CLKTFEGHTSSVLRASFLTRGAQIVSCGA------DGLVKLWTVRTGECIAT  501 (768)
Q Consensus       432 ~~~~~l~t~~~d---~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~  501 (768)
                      |.+++++.++-|   |.|-+||..... ++..+.+.+...  +.|+||+.++.+...      |..++|||+.....-  
T Consensus       325 p~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~--~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--  400 (561)
T COG5354         325 PHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSY--CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--  400 (561)
T ss_pred             CcccEEEEecCCccccceEEeccCCceEEEEEeecCCceE--eeccCCceEEEecCCCcccccCcceEEEEecCchhh--
Confidence            999999998765   679999976654 444776655443  789999999877643      778999998543321  


Q ss_pred             eccCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214          502 YDKHEDKIWALAVGKKTEMFATGGSDA  528 (768)
Q Consensus       502 ~~~~~~~v~~l~~s~~~~~l~s~~~dg  528 (768)
                            ..+.+.|.|.|++..+.+.+.
T Consensus       401 ------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         401 ------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             ------hhhhccccCCcccceeeccCC
Confidence                  456678888888877777665

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.47  E-value=9.8e-12  Score=115.83  Aligned_cols=238  Identities=17%  Similarity=0.221  Sum_probs=152.4

Q ss_pred             eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce-E--EEeeec-----ccCcEEEEEEecCCCcEEEEEeCCC
Q 004214          279 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-C--VGVGTG-----HMGAVGAVAFSKKLQNFLVSGSSDH  350 (768)
Q Consensus       279 ~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~--~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~dg  350 (768)
                      ..|.-.|.++.  ..++... +++ ..|=.|.+|+++-.. .  +..+++     -+..|++..|+|...++++-.+..|
T Consensus       161 NaHtyhiNSIS--~NsD~Et-~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKG  236 (433)
T KOG1354|consen  161 NAHTYHINSIS--VNSDKET-FLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKG  236 (433)
T ss_pred             ccceeEeeeee--ecCccce-Eee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCC
Confidence            45777888886  6666665 444 457899999986321 1  112222     2456899999999888999999999


Q ss_pred             eEEEEeCCCCCC------CCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCceEEEEeccC-
Q 004214          351 TIKVWSFDGLSD------DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL-PDLVSVVTFRGHK-  422 (768)
Q Consensus       351 ~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~-  422 (768)
                      +|++.|++....      ..+.+........+..--..|..+.|+++|+++++-+. -+|++||+ ...+++.+++-|. 
T Consensus       237 tIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~  315 (433)
T KOG1354|consen  237 TIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEY  315 (433)
T ss_pred             cEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHh
Confidence            999999984321      11112222223333344567889999999999998665 58999999 5667777777663 


Q ss_pred             -----------CCe---EEEEEccCCCEEEEeeCCCcEEEEeCCCCcee-EEeecCCCc--EEEEEEEeCCCEEEEEeCC
Q 004214          423 -----------RGI---WSVEFSPVDQVVITASGDKTIKIWSISDGSCL-KTFEGHTSS--VLRASFLTRGAQIVSCGAD  485 (768)
Q Consensus       423 -----------~~v---~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~--v~~~~~s~~~~~l~s~~~d  485 (768)
                                 ..|   ..++|+.++.+++||+....+++|++..|... .++......  ...+   ..-+.+.+++..
T Consensus       316 lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r  392 (433)
T KOG1354|consen  316 LRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKR  392 (433)
T ss_pred             HHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeeecCCCc
Confidence                       222   45789999999999999999999998766432 233222111  1111   112234444443


Q ss_pred             CcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004214          486 GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW  533 (768)
Q Consensus       486 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw  533 (768)
                      ....+|       +..++ ....+...+|+|..+.+|.+..+. +++|
T Consensus       393 ~~~~~~-------vd~ld-f~kkilh~aWhp~en~ia~aatnn-lyif  431 (433)
T KOG1354|consen  393 KRDEIS-------VDALD-FRKKILHTAWHPKENSIAVAATNN-LYIF  431 (433)
T ss_pred             cccccc-------cchhh-hhhHHHhhccCCccceeeeeecCc-eEEe
Confidence            332221       11121 344566788999999998887664 4554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=1.3e-11  Score=131.22  Aligned_cols=214  Identities=15%  Similarity=0.061  Sum_probs=144.2

Q ss_pred             CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeC---CCeEEEEeCCCCCCCCccccccceeeEeeccCCCe
Q 004214          307 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS---DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI  383 (768)
Q Consensus       307 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i  383 (768)
                      ..|.+||...... ..+..+...+.+.+|+|+++. ++..+.   +..|.+||+..+..           ..........
T Consensus       184 ~~l~i~D~~g~~~-~~lt~~~~~v~~p~wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~-----------~~l~~~~g~~  250 (433)
T PRK04922        184 YALQVADSDGYNP-QTILRSAEPILSPAWSPDGKK-LAYVSFERGRSAIYVQDLATGQR-----------ELVASFRGIN  250 (433)
T ss_pred             EEEEEECCCCCCc-eEeecCCCccccccCCCCCCE-EEEEecCCCCcEEEEEECCCCCE-----------EEeccCCCCc
Confidence            3688999865443 344556778999999999884 554443   34699999875421           1112223344


Q ss_pred             EEEEEccCCCEEEE-EeCCC--cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC-CCc--EEEEeCCCCcee
Q 004214          384 NSLAVAPNDSLVCT-GSQDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKT--IKIWSISDGSCL  457 (768)
Q Consensus       384 ~~~~~s~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d~~--i~iwd~~~~~~~  457 (768)
                      .+.+|+|+|+.++. .+.+|  .|++||+.+++.. .+..+.......+|+|||+.|+.++. +|.  |+++|+.+++..
T Consensus       251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~  329 (433)
T PRK04922        251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE  329 (433)
T ss_pred             cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence            57899999987764 45555  5999999887643 45555555678899999998887664 444  777777766543


Q ss_pred             EEeecCCCcEEEEEEEeCCCEEEEEeCCC---cEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC---CcEE
Q 004214          458 KTFEGHTSSVLRASFLTRGAQIVSCGADG---LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD---ALVN  531 (768)
Q Consensus       458 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d---g~v~  531 (768)
                      . +..+.......+|+|+|++|+..+.++   .|.+||+.+++.. .+. +........|+|||++++..+.+   +.|.
T Consensus       330 ~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~  406 (433)
T PRK04922        330 R-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLA  406 (433)
T ss_pred             E-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEE
Confidence            3 222333445689999999998765433   6999999888765 333 33344567999999988876653   3467


Q ss_pred             EEEcCC
Q 004214          532 LWHDST  537 (768)
Q Consensus       532 vw~~~~  537 (768)
                      +++...
T Consensus       407 ~~~~~g  412 (433)
T PRK04922        407 AVSTDG  412 (433)
T ss_pred             EEECCC
Confidence            777653

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=3.3e-10  Score=115.60  Aligned_cols=461  Identities=13%  Similarity=0.101  Sum_probs=287.8

Q ss_pred             CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe---------------eEEEecCccceeEEEEEcCCCCEEEEEe
Q 004214           29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK---------------CVATLDKHFSRVTSMAITSDGSTLISAG   93 (768)
Q Consensus        29 h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~---------------~~~~l~~h~~~V~~l~fs~d~~~L~s~~   93 (768)
                      ......|++|+....+  +|.|+.||.++|-.+.+..               .-+++.||++.|.-+.|+.+.+.|-|+.
T Consensus        13 nnvkL~c~~WNke~gy--IAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD   90 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGY--IACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD   90 (1189)
T ss_pred             CCceEEEEEEcccCCe--EEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence            4557789999987666  9999999999999875421               1256889999999999999999999999


Q ss_pred             CCCeEEEEECCCCeeeeee---ecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCc
Q 004214           94 RDKVVNLWDLRDYSCKLTV---PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA  170 (768)
Q Consensus        94 ~dg~i~vWd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~  170 (768)
                      .+|.|.||-+-.+.=....   .....+.+++|..+|.                       .+..+-+||.|.+=.+++.
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~-----------------------kIcIvYeDGavIVGsvdGN  147 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT-----------------------KICIVYEDGAVIVGSVDGN  147 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-----------------------EEEEEEccCCEEEEeeccc
Confidence            9999999998766532222   2344578899998887                       5555666666666555555


Q ss_pred             eeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEE----EeeecccCCceeEEE
Q 004214          171 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELIL----SKRLVGYNEEILDLK  246 (768)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~  246 (768)
                      .+.......           .....+.++++...++..-.+|.+.+|+....-..++....    ...+......|..+.
T Consensus       148 RIwgKeLkg-----------~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~  216 (1189)
T KOG2041|consen  148 RIWGKELKG-----------QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIE  216 (1189)
T ss_pred             eecchhcch-----------heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcccccee
Confidence            443222111           22346678899999999999999999998776544433322    222333444566777


Q ss_pred             Ee-------cCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC---------CeEE
Q 004214          247 FL-------GEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD---------NSVR  310 (768)
Q Consensus       247 ~~-------~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d---------g~i~  310 (768)
                      |.       +|+.+.++++..+|.+++..-........+... -.+....  |.+.|.. |+.++.+         +.|.
T Consensus       217 w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg-m~~vgak--Wnh~G~v-LAvcG~~~da~~~~d~n~v~  292 (1189)
T KOG2041|consen  217 WNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG-MKIVGAK--WNHNGAV-LAVCGNDSDADEPTDSNKVH  292 (1189)
T ss_pred             eccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc-cEeecce--ecCCCcE-EEEccCcccccCccccceEE
Confidence            63       478899999999999999876554443333322 3344444  5666665 6666543         2455


Q ss_pred             EEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCC-------------CCccccccceeeEee
Q 004214          311 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD-------------DAEQPMNLKAKAVVA  377 (768)
Q Consensus       311 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~  377 (768)
                      +|. .-|..+..++.....|++++|-..|-  =++-..|+.|.+=+++..-.             ..+.+..........
T Consensus       293 Fys-p~G~i~gtlkvpg~~It~lsWEg~gL--riA~AvdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk  369 (1189)
T KOG2041|consen  293 FYS-PYGHIVGTLKVPGSCITGLSWEGTGL--RIAIAVDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTK  369 (1189)
T ss_pred             Eec-cchhheEEEecCCceeeeeEEcCCce--EEEEEecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecc
Confidence            554 34667778888888999999976643  33344566666655542200             000000000000000


Q ss_pred             ------ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCceEEEEecc-------CCCeEEE---EEccCCCEEEEe
Q 004214          378 ------AHGKDINSLAVAPNDSLVCTGSQDRTACVWRL-PDLVSVVTFRGH-------KRGIWSV---EFSPVDQVVITA  440 (768)
Q Consensus       378 ------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~-------~~~v~~v---~~s~~~~~l~t~  440 (768)
                            ..-....+++++.+.-.|++-..||.+.-++. ++...+..+.-.       ....+.+   -..-++.+++.+
T Consensus       370 ~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviA  449 (1189)
T KOG2041|consen  370 TNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIA  449 (1189)
T ss_pred             cChhhhhhhcceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEe
Confidence                  01122345666666666666666776665532 111111111100       0111111   112246677777


Q ss_pred             eCCCcEEEEeCCCCce--------------------------------eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcE
Q 004214          441 SGDKTIKIWSISDGSC--------------------------------LKTFEGHTSSVLRASFLTRGAQIVSCGADGLV  488 (768)
Q Consensus       441 ~~d~~i~iwd~~~~~~--------------------------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  488 (768)
                      |.+ .+.+|.....+.                                .+++.|...+|..++.+  .++|+.+-..|.|
T Consensus       450 S~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I  526 (1189)
T KOG2041|consen  450 SEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGI  526 (1189)
T ss_pred             ccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCce
Confidence            774 577887532210                                12344566777666665  5689999999999


Q ss_pred             EEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       489 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      .-|.+.+.-....+. -+..|.+++..-+...++....-|.+.+.++.
T Consensus       527 ~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd  573 (1189)
T KOG2041|consen  527 YRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLD  573 (1189)
T ss_pred             EEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeeeecc
Confidence            999998887776665 45678888887777777777777777777655

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=7.2e-12  Score=132.59  Aligned_cols=206  Identities=12%  Similarity=0.060  Sum_probs=134.4

Q ss_pred             CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC--CeEEEEeCCCCCCCCccccccceeeEeeccCCCeE
Q 004214          307 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN  384 (768)
Q Consensus       307 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~  384 (768)
                      ..|.++|.... ....+..+...+.+.+|+|+|+.++++...+  ..|.+||+..+.          . ..+......+.
T Consensus       176 ~~L~~~D~dG~-~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~----------~-~~l~~~~g~~~  243 (427)
T PRK02889        176 YQLQISDADGQ-NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR----------R-RVVANFKGSNS  243 (427)
T ss_pred             cEEEEECCCCC-CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC----------E-EEeecCCCCcc
Confidence            46777777443 3334456778899999999987544433232  459999987542          1 11122334556


Q ss_pred             EEEEccCCCEEEE-EeCCCcEEEEe--CCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC-CCcEEEEe--CCCCceeE
Q 004214          385 SLAVAPNDSLVCT-GSQDRTACVWR--LPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWS--ISDGSCLK  458 (768)
Q Consensus       385 ~~~~s~~~~~l~~-~~~dg~i~i~d--~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d~~i~iwd--~~~~~~~~  458 (768)
                      +.+|+|||+.|+. .+.+|...+|.  +.++. ...+..+........|+|||+.|+..+. +|...||.  +.++... 
T Consensus       244 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-  321 (427)
T PRK02889        244 APAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-  321 (427)
T ss_pred             ceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-
Confidence            8899999998874 56777766665  44443 4445555556677899999998876554 45556665  4444432 


Q ss_pred             EeecCCCcEEEEEEEeCCCEEEEEeCCC---cEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214          459 TFEGHTSSVLRASFLTRGAQIVSCGADG---LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA  528 (768)
Q Consensus       459 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg  528 (768)
                      .+..+........|+|+|++|+..+.++   .|.+||+.+++......  ........|+|||++|+.++.++
T Consensus       322 ~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        322 RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecC
Confidence            2222223344678999999998777654   69999998887543322  23346789999999988877544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.42  E-value=4.5e-08  Score=111.41  Aligned_cols=445  Identities=13%  Similarity=0.150  Sum_probs=254.1

Q ss_pred             CcEEEEEEeeCCCccEEEEEeCCC--cEEEEECCCC---eeEEEec-----CccceeEEEEEcCCCCEEEEEeCCCeEEE
Q 004214           31 GVVSSILFHPDTDKSLLFSGSDDA--TVRVWDLLAK---KCVATLD-----KHFSRVTSMAITSDGSTLISAGRDKVVNL  100 (768)
Q Consensus        31 ~~V~~l~~spd~~~~~l~sg~~dg--~I~iWd~~~~---~~~~~l~-----~h~~~V~~l~fs~d~~~L~s~~~dg~i~v  100 (768)
                      ..+...+|.+..+..+++.+....  .|.+......   +.+..+.     ...+.|.++.|-++...|+.+..+|.|.+
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~  101 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL  101 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence            467888888877776666665544  3444443322   2444443     24568999999999999999999999999


Q ss_pred             E----ECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeec
Q 004214          101 W----DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK  176 (768)
Q Consensus       101 W----d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~  176 (768)
                      .    +..+......-.....+.+++|+|++.                       .++.++.+|.+.+..-+-.-+....
T Consensus       102 ~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~E-----------------------lla~vT~~~~l~~mt~~fd~i~E~~  158 (928)
T PF04762_consen  102 VREDPDPDEDEIEIVGSVDSGILAASWSPDEE-----------------------LLALVTGEGNLLLMTRDFDPISEVP  158 (928)
T ss_pred             EEccCCCCCceeEEEEEEcCcEEEEEECCCcC-----------------------EEEEEeCCCEEEEEeccceEEEEee
Confidence            9    666666555556677899999999987                       5566666666666543222111110


Q ss_pred             CCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcc-------cceeeEEEeeecccCCceeEEEEec
Q 004214          177 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPE-------KKMELILSKRLVGYNEEILDLKFLG  249 (768)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~i~~~~~~~  249 (768)
                      ....                  .......+.++-...=.-|....++.       +.........+. .++.-..++|-+
T Consensus       159 l~~~------------------~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRG  219 (928)
T PF04762_consen  159 LDSD------------------DFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRG  219 (928)
T ss_pred             cCcc------------------ccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECC
Confidence            0000                  00011112221111111111000000       000000011122 555667888875


Q ss_pred             CCCCEEEEEeC------CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeC---CCeEEEEeCCCceEE
Q 004214          250 EEEQYLAVATN------IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK---DNSVRLWDSESRCCV  320 (768)
Q Consensus       250 ~~~~~l~~~~~------~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~  320 (768)
                       |+.++|+.+-      ...++||+-+ |.....-..-.+--.+++  |.|.|.. +|+...   ...|.+|.-+ |-.-
T Consensus       220 -DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~--WrPsG~l-IA~~q~~~~~~~VvFfErN-GLrh  293 (928)
T PF04762_consen  220 -DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALS--WRPSGNL-IASSQRLPDRHDVVFFERN-GLRH  293 (928)
T ss_pred             -CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCcc--CCCCCCE-EEEEEEcCCCcEEEEEecC-CcEe
Confidence             7888888764      2578999977 443333332222233444  6666664 766654   3456666533 3222


Q ss_pred             Eee----ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee-ccCCCeEEEEEcc-CCCE
Q 004214          321 GVG----TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA-AHGKDINSLAVAP-NDSL  394 (768)
Q Consensus       321 ~~~----~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~-~~~~  394 (768)
                      ..|    ......|..+.|++++. +|+....|. |.+|-..+.        .+-.+.... .....+..+.|+| +...
T Consensus       294 geF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NY--------HWYLKqei~~~~~~~~~~~~Wdpe~p~~  363 (928)
T PF04762_consen  294 GEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNY--------HWYLKQEIRFSSSESVNFVKWDPEKPLR  363 (928)
T ss_pred             eeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCC--------EEEEEEEEEccCCCCCCceEECCCCCCE
Confidence            222    23456899999999966 777766555 999987753        222222222 2233455589999 4556


Q ss_pred             EEEEeCCCcEEEEeCC----CC--------ceEEEEec-----------------------cCCCeEEEEEccCCCEEEE
Q 004214          395 VCTGSQDRTACVWRLP----DL--------VSVVTFRG-----------------------HKRGIWSVEFSPVDQVVIT  439 (768)
Q Consensus       395 l~~~~~dg~i~i~d~~----~~--------~~~~~~~~-----------------------~~~~v~~v~~s~~~~~l~t  439 (768)
                      |...+.+|.+..+++.    .+        ..+..+.|                       ...+|.+++|++++..+++
T Consensus       364 L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~av  443 (928)
T PF04762_consen  364 LHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAV  443 (928)
T ss_pred             EEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEE
Confidence            7777776777665431    10        11222221                       2568999999999988999


Q ss_pred             eeCCCcEEEEeCCCCce--------eEEee----------cCCCcEEEEEEEeCCCEEEEEeCC---CcEEEEECCCC--
Q 004214          440 ASGDKTIKIWSISDGSC--------LKTFE----------GHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTG--  496 (768)
Q Consensus       440 ~~~d~~i~iwd~~~~~~--------~~~~~----------~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~--  496 (768)
                      -..||.|.+|.......        ...+.          .....+..++|..+...++....+   ..+.++++...  
T Consensus       444 l~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  523 (928)
T PF04762_consen  444 LTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSEN  523 (928)
T ss_pred             EECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCC
Confidence            99999999998543221        11111          123457888888887776666554   57888877433  


Q ss_pred             -eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004214          497 -ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW  533 (768)
Q Consensus       497 -~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw  533 (768)
                       ..+.....-.+.+..+...++...++.-..+|.+...
T Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~  561 (928)
T PF04762_consen  524 SASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQL  561 (928)
T ss_pred             ceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEe
Confidence             2333333344555555555555445555567766543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.40  E-value=9e-09  Score=105.79  Aligned_cols=290  Identities=14%  Similarity=0.158  Sum_probs=176.2

Q ss_pred             CeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC----CCcEEEEECCCc--ee--eeeeeCCcc
Q 004214          212 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN----IEQVQVYDLSSM--SC--SYVLAGHSE  283 (768)
Q Consensus       212 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~--~~--~~~~~~~~~  283 (768)
                      +.|..|.+.....   .+..... .........+++++ ++++|.+...    .+.|..|.+...  ..  +........
T Consensus        13 ~gI~~~~~d~~~g---~l~~~~~-~~~~~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~   87 (345)
T PF10282_consen   13 GGIYVFRFDEETG---TLTLVQT-VAEGENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS   87 (345)
T ss_dssp             TEEEEEEEETTTT---EEEEEEE-EEESSSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred             CcEEEEEEcCCCC---CceEeee-ecCCCCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence            6777777743332   2222222 22334455566665 5566666555    578999887764  32  222332222


Q ss_pred             ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-ceEEEe---ee----------cccCcEEEEEEecCCCcEEEEEeCC
Q 004214          284 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGV---GT----------GHMGAVGAVAFSKKLQNFLVSGSSD  349 (768)
Q Consensus       284 ~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~l~s~~~d  349 (768)
                      ....++  ..++++.++++...+|.|.++++.. +.+...   ..          .......++.++|+++.++++.-..
T Consensus        88 ~p~~i~--~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~  165 (345)
T PF10282_consen   88 SPCHIA--VDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA  165 (345)
T ss_dssp             CEEEEE--ECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred             CcEEEE--EecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence            223343  6678887666666799999999986 443332   11          1234578999999988666666667


Q ss_pred             CeEEEEeCCCCCCCCccccccc-eeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCC--CCc--eEEEEecc--
Q 004214          350 HTIKVWSFDGLSDDAEQPMNLK-AKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLP--DLV--SVVTFRGH--  421 (768)
Q Consensus       350 g~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~--~~~--~~~~~~~~--  421 (768)
                      ..|.+|++......      .. ............+.++|+|+++++.+.. .++.|.+|++.  ++.  .+..+...  
T Consensus       166 D~v~~~~~~~~~~~------l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~  239 (345)
T PF10282_consen  166 DRVYVYDIDDDTGK------LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE  239 (345)
T ss_dssp             TEEEEEEE-TTS-T------EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred             CEEEEEEEeCCCce------EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence            78999998754211      11 1122234567789999999999886665 56789999987  432  22222211  


Q ss_pred             ----CCCeEEEEEccCCCEEEEee-CCCcEEEEeCC--CCc--eeEEeecCCCcEEEEEEEeCCCEEEEEeC-CCcEEEE
Q 004214          422 ----KRGIWSVEFSPVDQVVITAS-GDKTIKIWSIS--DGS--CLKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLW  491 (768)
Q Consensus       422 ----~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~--~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iw  491 (768)
                          ......++++|||++|+++. .+++|.+|++.  ++.  .+..+.........+.++|+|++|+++.. ++.|.+|
T Consensus       240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf  319 (345)
T PF10282_consen  240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF  319 (345)
T ss_dssp             TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence                12578899999999888765 46789999993  333  33444444455889999999999988875 6689998


Q ss_pred             EC--CCCeEEEEec-cCCCcEEEEEE
Q 004214          492 TV--RTGECIATYD-KHEDKIWALAV  514 (768)
Q Consensus       492 d~--~~~~~~~~~~-~~~~~v~~l~~  514 (768)
                      ++  .+|.+...-. ..-....|+.|
T Consensus       320 ~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  320 DIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             EEeCCCCcEEEecccccCCCCEEEeC
Confidence            76  4676544432 12334455554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.39  E-value=3.1e-11  Score=121.20  Aligned_cols=191  Identities=8%  Similarity=0.149  Sum_probs=153.3

Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEE------c--------------cCCCEEEEE
Q 004214          339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV------A--------------PNDSLVCTG  398 (768)
Q Consensus       339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------s--------------~~~~~l~~~  398 (768)
                      +..+++....||.+++|+........+.....       .-.+..++..|      +              .+-..++-|
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~-------~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlg   76 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA-------SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLG   76 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccch-------hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEee
Confidence            34589999999999999987653322111000       01111222222      1              234578889


Q ss_pred             eCCCcEEEEeCCCCceEEEEe--ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC
Q 004214          399 SQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG  476 (768)
Q Consensus       399 ~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  476 (768)
                      ...|.|.+|+...++....+.  .|.++|.++.++.+-..|.+++.|+.+..|+...+..++.+.+....+.+++.+|||
T Consensus        77 t~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~  156 (541)
T KOG4547|consen   77 TPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG  156 (541)
T ss_pred             cCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCC
Confidence            999999999999999888776  589999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCC-----CCEEEE-EeCCCcEEEEEcCCH
Q 004214          477 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK-----TEMFAT-GGSDALVNLWHDSTA  538 (768)
Q Consensus       477 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~-----~~~l~s-~~~dg~v~vw~~~~~  538 (768)
                      ..|++++  +.|++||+.+++.+.+|.+|.++|.++.|.-+     |.++.+ ...+..+.+|-....
T Consensus       157 ~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  157 KILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             CEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence            9999887  78999999999999999999999999999876     666655 445666888887653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.38  E-value=4.6e-11  Score=111.46  Aligned_cols=253  Identities=21%  Similarity=0.314  Sum_probs=174.6

Q ss_pred             ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce-----EEEeeeccc------------CcEEEEEEecCCC-cEE
Q 004214          282 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-----CVGVGTGHM------------GAVGAVAFSKKLQ-NFL  343 (768)
Q Consensus       282 ~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~-~~l  343 (768)
                      .+.+.++.  +...|.. |++|..+|.|.++.-....     ....++.|.            ..|..+.|.+++. ..+
T Consensus        25 adiis~ve--f~~~Ge~-LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   25 ADIISAVE--FDHYGER-LATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             hcceeeEE--eecccce-EeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            45667776  6677776 9999999999999643221     333444443            3567788877643 357


Q ss_pred             EEEeCCCeEEEEeCCCCCCCCc--------c---------c----c-----ccceeeEeeccCCCeEEEEEccCCCEEEE
Q 004214          344 VSGSSDHTIKVWSFDGLSDDAE--------Q---------P----M-----NLKAKAVVAAHGKDINSLAVAPNDSLVCT  397 (768)
Q Consensus       344 ~s~~~dg~i~iwd~~~~~~~~~--------~---------~----~-----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  397 (768)
                      +..+.|.+|++|.+........        .         +    .     .........+|.-.|+++.++.|+..+++
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS  181 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS  181 (433)
T ss_pred             EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence            7788999999999865422110        0         0    0     00011122468888999999999998888


Q ss_pred             EeCCCcEEEEeCCCCce---EEEEecc-----CCCeEEEEEccC-CCEEEEeeCCCcEEEEeCCCCcee----EEe----
Q 004214          398 GSQDRTACVWRLPDLVS---VVTFRGH-----KRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCL----KTF----  460 (768)
Q Consensus       398 ~~~dg~i~i~d~~~~~~---~~~~~~~-----~~~v~~v~~s~~-~~~l~t~~~d~~i~iwd~~~~~~~----~~~----  460 (768)
                      + .|=.|.+|+++--..   +.-++.+     ..-|++..|+|. .++++-.+..|+|++-|++...+-    +.|    
T Consensus       182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe  260 (433)
T KOG1354|consen  182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE  260 (433)
T ss_pred             c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence            6 467899999863322   2223333     235888999996 467777778899999999843211    111    


Q ss_pred             --------ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC-CCCeEEEEeccCCC------------cE---EEEEEcC
Q 004214          461 --------EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV-RTGECIATYDKHED------------KI---WALAVGK  516 (768)
Q Consensus       461 --------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~------------~v---~~l~~s~  516 (768)
                              ..--..|..+.|+++|+|+++-+. -+|++||+ ...+++.++..|..            .|   ..++|+.
T Consensus       261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg  339 (433)
T KOG1354|consen  261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG  339 (433)
T ss_pred             CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence                    122357889999999999998654 57999999 56777777766542            22   4578999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCHH
Q 004214          517 KTEMFATGGSDALVNLWHDSTAA  539 (768)
Q Consensus       517 ~~~~l~s~~~dg~v~vw~~~~~~  539 (768)
                      ++.+++||+....+++++...+.
T Consensus       340 ~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  340 NDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             CcceEecccccceEEEecCCCCc
Confidence            99999999999999999965544

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.38  E-value=7.5e-11  Score=110.17  Aligned_cols=337  Identities=14%  Similarity=0.203  Sum_probs=212.0

Q ss_pred             eeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeeeeecceeEeeEEecCCCCCccccccccchhhhh
Q 004214           65 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR-DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIK  143 (768)
Q Consensus        65 ~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  143 (768)
                      ..++.++||...|+....-|-..-+++++.|.+++||--. .++.-..+.+.                            
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~----------------------------   66 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY----------------------------   66 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh----------------------------
Confidence            3456788999999998888888889999999999999432 22211111110                            


Q ss_pred             cccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCc
Q 004214          144 KKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP  223 (768)
Q Consensus       144 ~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~  223 (768)
                                                                   .....+...+.+....|+++-.+|.+.-+.+...-
T Consensus        67 ---------------------------------------------mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf  101 (404)
T KOG1409|consen   67 ---------------------------------------------MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF  101 (404)
T ss_pred             ---------------------------------------------CCCCceEeeeeccceEEEEEEecceEEEEEhhhhh
Confidence                                                         11334556666777778888888888888776544


Q ss_pred             ccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEE
Q 004214          224 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG  303 (768)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~  303 (768)
                      +   .....+....|...+..+.|.- ....+++.+.|..+.---.+.+..+..+.- ....+++.  +.-   .+...|
T Consensus       102 n---km~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~--~d~---~~~fvG  171 (404)
T KOG1409|consen  102 N---KMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQ--FDA---LYAFVG  171 (404)
T ss_pred             h---hcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEe-eccCCCCc--eee---EEEEec
Confidence            3   2334455667788888888864 344566666655554433444332211110 00000110  000   035556


Q ss_pred             eCCCeEEEEeC--CCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC
Q 004214          304 SKDNSVRLWDS--ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK  381 (768)
Q Consensus       304 ~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  381 (768)
                      ...|.|..-.+  ..-.++..+.+|.+.+.+++|.|. +.++.+|..|..+.+||+....         .......+|.+
T Consensus       172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~---------g~~~el~gh~~  241 (404)
T KOG1409|consen  172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRK---------GTAYELQGHND  241 (404)
T ss_pred             ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEeccccCceEEEeccCCc---------ceeeeeccchh
Confidence            66666665544  345677888999999999999998 4489999999999999997532         24556678999


Q ss_pred             CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEE-----------------------------Eecc-----CCCeEE
Q 004214          382 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT-----------------------------FRGH-----KRGIWS  427 (768)
Q Consensus       382 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----------------------------~~~~-----~~~v~~  427 (768)
                      .|..+...+--+.+.+++.||.|.+|+.+.......                             ++.|     ...|..
T Consensus       242 kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~  321 (404)
T KOG1409|consen  242 KVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCG  321 (404)
T ss_pred             hhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCc
Confidence            999999888889999999999999999864321100                             0001     111211


Q ss_pred             EEEccCCCEEEEeeCCCcEEEEeCC-------CCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214          428 VEFSPVDQVVITASGDKTIKIWSIS-------DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       428 v~~s~~~~~l~t~~~d~~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  495 (768)
                      .+-+ +.....+-+..-.+|+-|.-       +..++..+..-...|+.+.+...-.+|+++|.|..|+|||+++
T Consensus       322 ~c~s-~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  322 KCSS-NRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             cccc-CccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence            1111 11122222222344444421       2234555544456788888888888999999999999999864

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.38  E-value=1.3e-09  Score=114.30  Aligned_cols=216  Identities=10%  Similarity=0.021  Sum_probs=128.9

Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeeCCccceEEE--eeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccC---
Q 004214          254 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCL--DTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMG---  328 (768)
Q Consensus       254 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---  328 (768)
                      .+++++.++.++.||..+++.+.............  ...... ++. ++.+..+|.+..+|..+++.+........   
T Consensus       147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~-v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~  224 (377)
T TIGR03300       147 LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DGG-VLVGFAGGKLVALDLQTGQPLWEQRVALPKGR  224 (377)
T ss_pred             EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CCE-EEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence            34444555666666666666555443322111000  000111 233 67788889999999998877654321100   


Q ss_pred             -c------E-EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC
Q 004214          329 -A------V-GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ  400 (768)
Q Consensus       329 -~------v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  400 (768)
                       .      + ....+.  +. .++.++.+|.+..||...+..          ..... .. ......  ..+..+++++.
T Consensus       225 ~~~~~~~~~~~~p~~~--~~-~vy~~~~~g~l~a~d~~tG~~----------~W~~~-~~-~~~~p~--~~~~~vyv~~~  287 (377)
T TIGR03300       225 TELERLVDVDGDPVVD--GG-QVYAVSYQGRVAALDLRSGRV----------LWKRD-AS-SYQGPA--VDDNRLYVTDA  287 (377)
T ss_pred             CchhhhhccCCccEEE--CC-EEEEEEcCCEEEEEECCCCcE----------EEeec-cC-CccCce--EeCCEEEEECC
Confidence             0      0 011111  22 677888899999999875521          11111 11 111112  24667888889


Q ss_pred             CCcEEEEeCCCCceEEEEeccCC-CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEE
Q 004214          401 DRTACVWRLPDLVSVVTFRGHKR-GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQI  479 (768)
Q Consensus       401 dg~i~i~d~~~~~~~~~~~~~~~-~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  479 (768)
                      +|.+..+|..+++.+........ ...+...  .+..+++++.+|.|+++|..+|+.+.++..+...+..--...+ ..|
T Consensus       288 ~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l  364 (377)
T TIGR03300       288 DGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGL  364 (377)
T ss_pred             CCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEE
Confidence            99999999999988765532211 2222222  3678899999999999999999999998866654433322334 358


Q ss_pred             EEEeCCCcEEEE
Q 004214          480 VSCGADGLVKLW  491 (768)
Q Consensus       480 ~s~~~dg~i~iw  491 (768)
                      +.++.||.|+.|
T Consensus       365 ~v~~~dG~l~~~  376 (377)
T TIGR03300       365 LVQTRDGDLYAF  376 (377)
T ss_pred             EEEeCCceEEEe
Confidence            889999998876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.38  E-value=4.9e-09  Score=104.37  Aligned_cols=125  Identities=14%  Similarity=0.068  Sum_probs=84.7

Q ss_pred             EEec-CCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe--eccCCCeEEEEEccCCCEEEEEeC----------
Q 004214          334 AFSK-KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV--AAHGKDINSLAVAPNDSLVCTGSQ----------  400 (768)
Q Consensus       334 ~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~----------  400 (768)
                      .+.+ ++. ++..... |+|.+.|+.........+.........  .-....+.-++++|+++.++++..          
T Consensus       200 ~~~~~dg~-~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~  277 (352)
T TIGR02658       200 AYSNKSGR-LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTA  277 (352)
T ss_pred             ceEcCCCc-EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCC
Confidence            3455 655 4444444 999999976442211111000000000  012334455999999998888532          


Q ss_pred             CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCC-EEEEee-CCCcEEEEeCCCCceeEEee
Q 004214          401 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ-VVITAS-GDKTIKIWSISDGSCLKTFE  461 (768)
Q Consensus       401 dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~t~~-~d~~i~iwd~~~~~~~~~~~  461 (768)
                      .+.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.|.++|..+++.++++.
T Consensus       278 ~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       278 SRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             CCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            24799999999999998874 56899999999999 888766 57889999999999999883

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.38  E-value=1.1e-09  Score=114.90  Aligned_cols=263  Identities=13%  Similarity=0.053  Sum_probs=157.8

Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEE-
Q 004214          253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG-  331 (768)
Q Consensus       253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-  331 (768)
                      ..+++++.++.++.+|..+++......... .+.+.   ....++. ++.++.+|.+..||..+++.+........... 
T Consensus       106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~---p~v~~~~-v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~  180 (377)
T TIGR03300       106 GLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSP---PLVANGL-VVVRTNDGRLTALDAATGERLWTYSRVTPALTL  180 (377)
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecC---CEEECCE-EEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence            345555556666666666666554443221 11111   1112344 66677899999999999988776654332211 


Q ss_pred             ----EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc--CCCEEEEEeCCCcEE
Q 004214          332 ----AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP--NDSLVCTGSQDRTAC  405 (768)
Q Consensus       332 ----~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~  405 (768)
                          +.... + . .++.+..+|.+..+|..++...-.........   .........+.-+|  .+..+++++.+|.++
T Consensus       181 ~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g---~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~  254 (377)
T TIGR03300       181 RGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKG---RTELERLVDVDGDPVVDGGQVYAVSYQGRVA  254 (377)
T ss_pred             cCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCC---CCchhhhhccCCccEEECCEEEEEEcCCEEE
Confidence                11122 2 2 57788888999999987653211100000000   00000000011111  355788888899999


Q ss_pred             EEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC-cEEEEEEEeCCCEEEEEeC
Q 004214          406 VWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS-SVLRASFLTRGAQIVSCGA  484 (768)
Q Consensus       406 i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~  484 (768)
                      .||..+++.+......  ......  ..+..+++++.||.+..+|..+|+.+........ .......  .+..|++++.
T Consensus       255 a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~  328 (377)
T TIGR03300       255 ALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDF  328 (377)
T ss_pred             EEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeC
Confidence            9999999877665421  112222  2467788888999999999999988766532211 1122222  4678999999


Q ss_pred             CCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004214          485 DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW  533 (768)
Q Consensus       485 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw  533 (768)
                      +|.|+++|..+|+.+.++..+...+++--...+ ..|+.++.||.|..|
T Consensus       329 ~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       329 EGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             CCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence            999999999999999998866654433222223 458889999998765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15)

Probab=99.36  E-value=4.7e-12  Score=109.73  Aligned_cols=128  Identities=16%  Similarity=0.228  Sum_probs=113.2

Q ss_pred             HhhhHHHHhhcccchHHHHHHHh-hcCCchhHHHHHHHHHhchhhHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCchHH
Q 004214          553 LRGQELENAVLDADYTKAIQVAF-ELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHV  631 (768)
Q Consensus       553 ~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~~~~~~  631 (768)
                      .+.+.++.++..++|.+|++.++ ..+.|..++.++.++    .+++.+..|+.++++..+.++|+|+.+++++|+++.+
T Consensus        20 ~kl~~~D~~Lr~F~y~~ALD~aL~~~~~p~~~vavl~EL----~~R~~L~~AL~~Rde~~L~piL~Fl~k~i~~pr~~~~   95 (148)
T PF09384_consen   20 KKLSKYDKLLRKFRYKKALDAALVKNKSPEVVVAVLEEL----IRRGALRAALAGRDEESLEPILKFLIKNITDPRYTRI   95 (148)
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHhcCCChHHHHHHHHHH----HHccHHHHHHHhCCHHHHHHHHHHHHHhCCCcccHHH
Confidence            35567889999999999999999 666675555555544    4456999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCcchhhcccChHhHHHhhccchHhHHHHHHHhHhhhhhhhee
Q 004214          632 AQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYT  685 (768)
Q Consensus       632 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~  685 (768)
                      +..++..+|++|++ .+..++.+.+.+..|...++++.+...+|+++.|+||++
T Consensus        96 l~~v~~~ildiY~~-~~~~s~~v~~~~~~L~~~v~~E~~~~~~l~~l~G~ld~L  148 (148)
T PF09384_consen   96 LVDVANIILDIYSP-VIGQSPEVDKLFQKLQRKVQEELQLQKELLELQGMLDML  148 (148)
T ss_pred             HHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhC
Confidence            99999999999976 566678899999999999999999999999999999975

This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.35  E-value=3.8e-10  Score=120.60  Aligned_cols=233  Identities=17%  Similarity=0.112  Sum_probs=151.2

Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC---CeEEEEeCCCceEEEeeecccCcEEEEEEecC
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD---NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK  338 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  338 (768)
                      ..|.++|..... ...+..+...+....  ++++++. ++.+..+   ..|++||+.++..... ..+.+.+.+++|+|+
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~--~Spdg~~-la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spD  244 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPA--WSPDGQK-LAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPD  244 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceeccc--CCCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCC
Confidence            457778875443 344555666676666  7788887 4444432   4799999998765433 335566778999999


Q ss_pred             CCcEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC-C--cEEEEeCCCCc
Q 004214          339 LQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-R--TACVWRLPDLV  413 (768)
Q Consensus       339 ~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~  413 (768)
                      ++.++++.+.++  .|.+|++....           ......+........|+|+|+.|+..+.. +  .|+++++.+++
T Consensus       245 g~~l~~~~~~~~~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~  313 (417)
T TIGR02800       245 GSKLAVSLSKDGNPDIYVMDLDGKQ-----------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE  313 (417)
T ss_pred             CCEEEEEECCCCCccEEEEECCCCC-----------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            886666666655  47778876432           11112233334567899999988776543 3  58888887765


Q ss_pred             eEEEEeccCCCeEEEEEccCCCEEEEeeCCC---cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCC---c
Q 004214          414 SVVTFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG---L  487 (768)
Q Consensus       414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~  487 (768)
                      .. .+..+...+....|+|+|++++.++.++   .|.+||+.++... .+... .......|+|+|++|+.++.++   .
T Consensus       314 ~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~  390 (417)
T TIGR02800       314 VR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGV  390 (417)
T ss_pred             EE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEE
Confidence            43 3444556678889999999999888766   7999999876543 33222 2334568999999988877654   3


Q ss_pred             EEEEECCCCeEEEEeccCCCcEEEEEE
Q 004214          488 VKLWTVRTGECIATYDKHEDKIWALAV  514 (768)
Q Consensus       488 i~iwd~~~~~~~~~~~~~~~~v~~l~~  514 (768)
                      +.+.+. ++.....+..+.+.+..++|
T Consensus       391 l~~~~~-~g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       391 LGLVST-DGRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             EEEEEC-CCceeeECCCCCCCcCCCCC
Confidence            555553 45555555544445544444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.35  E-value=1.4e-10  Score=108.39  Aligned_cols=245  Identities=16%  Similarity=0.298  Sum_probs=170.5

Q ss_pred             EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECC-Cceeeeee-eCCccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214          231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS-SMSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSKDNS  308 (768)
Q Consensus       231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~-~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~  308 (768)
                      ....+.|+.+.+++....+ .++-++..+.|.++++|--. .++.-..+ ..-..+++++.  +.+.... |+.|-..|+
T Consensus        16 ll~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~--y~~e~~~-L~vg~~ngt   91 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAME--YVSESRR-LYVGQDNGT   91 (404)
T ss_pred             hhhhhcCchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEee--eeccceE-EEEEEecce
Confidence            3455667777777766664 55678888899999999643 33322222 22234556664  5555555 899999999


Q ss_pred             EEEEeC----CCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCC-CCCCCCccccccceeeEeeccCCCe
Q 004214          309 VRLWDS----ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD-GLSDDAEQPMNLKAKAVVAAHGKDI  383 (768)
Q Consensus       309 i~iwd~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~i  383 (768)
                      +.-+.+    +.....+....|...+..+.|+.. ...+++.+.|..+. |... .+...        ....+.   ...
T Consensus        92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~~-~hc~e~~~~l--------g~Y~~~---~~~  158 (404)
T KOG1409|consen   92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLT-HEWVLSTGKDKQFA-WHCTESGNRL--------GGYNFE---TPA  158 (404)
T ss_pred             EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCC-ceeEEEeccccceE-EEeeccCCcc--------cceEee---ccC
Confidence            998864    345566677789999999999877 44788888887654 4332 21100        000000   111


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeC--CCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc-eeEEe
Q 004214          384 NSLAVAPNDSLVCTGSQDRTACVWRL--PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS-CLKTF  460 (768)
Q Consensus       384 ~~~~~s~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~-~~~~~  460 (768)
                      +++.+.-.  +...|...|.|....+  ....++.++.+|..++++++|.|...+|.+|..|..+.+||+--++ ....+
T Consensus       159 t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el  236 (404)
T KOG1409|consen  159 SALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL  236 (404)
T ss_pred             CCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee
Confidence            11111111  5556666676666554  4456788999999999999999999999999999999999986544 34567


Q ss_pred             ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214          461 EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR  494 (768)
Q Consensus       461 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  494 (768)
                      .+|...|..+...+--+.|++++.||.|.+|+.+
T Consensus       237 ~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  237 QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             ccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            7899999999998889999999999999999974

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.35  E-value=1.3e-08  Score=99.42  Aligned_cols=217  Identities=12%  Similarity=0.100  Sum_probs=153.3

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec---c---c-----CcEEEEE-EecCCCcEEEEEeCCCeEEEEeCCC
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG---H---M-----GAVGAVA-FSKKLQNFLVSGSSDHTIKVWSFDG  359 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~-----~~v~~~~-~~~~~~~~l~s~~~dg~i~iwd~~~  359 (768)
                      ..++|+..++  +..|.|.+||..+......--+   .   .     .+..-+. |++-...+++..|. |...+.+...
T Consensus       274 ~nsDGkrIvF--q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~  350 (668)
T COG4946         274 ANSDGKRIVF--QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWD  350 (668)
T ss_pred             cCCCCcEEEE--ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCC
Confidence            5567776444  3467899999887554322111   0   0     0111111 33333445666554 4455554332


Q ss_pred             CCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC-cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEE
Q 004214          360 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI  438 (768)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  438 (768)
                                  ......++...|.-..+..+++-++.|..|| .+-|||..+++.. .+...-+.|.++..+|+|+.++
T Consensus       351 ------------~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~v  417 (668)
T COG4946         351 ------------GYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVV  417 (668)
T ss_pred             ------------CeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEE
Confidence                        2233355667788888888888999999999 8999999887654 4555678899999999999999


Q ss_pred             EeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCC----cEEEEECCCCeEEEEeccCCCcEEEEEE
Q 004214          439 TASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG----LVKLWTVRTGECIATYDKHEDKIWALAV  514 (768)
Q Consensus       439 t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~l~~  514 (768)
                      ++.....+-+.|+.+|.....=+...+-|+...|+|+++++|-+--+|    .|+++|+..++....-. ..+.=.+-+|
T Consensus       418 vaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaF  496 (668)
T COG4946         418 VANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAF  496 (668)
T ss_pred             EEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCccc
Confidence            999999999999999987766666778899999999999999988877    58999998887655432 3333456689


Q ss_pred             cCCCCEEEEEe
Q 004214          515 GKKTEMFATGG  525 (768)
Q Consensus       515 s~~~~~l~s~~  525 (768)
                      .||+++|.--+
T Consensus       497 D~d~ryLYfLs  507 (668)
T COG4946         497 DPDGRYLYFLS  507 (668)
T ss_pred             CCCCcEEEEEe
Confidence            99999876544

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.35  E-value=2.5e-10  Score=104.47  Aligned_cols=272  Identities=19%  Similarity=0.210  Sum_probs=177.1

Q ss_pred             ecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec--CCCC-EEEEEeCCCcEEEEECCCceeeeeeeC---Ccc
Q 004214          210 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG--EEEQ-YLAVATNIEQVQVYDLSSMSCSYVLAG---HSE  283 (768)
Q Consensus       210 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~---~~~  283 (768)
                      ..|.+.+|++.......    .........+.+..+.|..  .++. .++.+...|.|.+|..........+.+   ..-
T Consensus        44 R~Gkl~Lys~~d~~~~~----l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki  119 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSP----LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI  119 (339)
T ss_pred             eccceEEEeecccccCc----cceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh
Confidence            45677777776554322    1111112234556666632  3333 667788889999998765544444433   222


Q ss_pred             ceE-EEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE--eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCC
Q 004214          284 IVL-CLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG--VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL  360 (768)
Q Consensus       284 ~v~-~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  360 (768)
                      .+. ++..-+...+.. ++++..+|.+.+-+........  ..+.|.-+.+...|+...++++.+|+.|+.+..||++..
T Consensus       120 ~~~~~lslD~~~~~~~-i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p  198 (339)
T KOG0280|consen  120 SVVEALSLDISTSGTK-IFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP  198 (339)
T ss_pred             hheeeeEEEeeccCce-EEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence            222 333335566665 8889899999976665554444  788999999999999888889999999999999999832


Q ss_pred             CCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCC-CceEEEEeccCCCeEEEEEccCC--CE
Q 004214          361 SDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVD--QV  436 (768)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~v~~s~~~--~~  436 (768)
                      .        .........|...|.++.-+| .+.++++|+.|-.|++||.++ ++++..-. -.++|+.+.++|.-  .+
T Consensus       199 ~--------~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~l  269 (339)
T KOG0280|consen  199 K--------TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRL  269 (339)
T ss_pred             c--------ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHH
Confidence            1        112222456888999999887 688999999999999999985 44544332 45889999999953  34


Q ss_pred             EEEeeCCCcEEEEeCCCCc-----eeEEeecCCCcEEEEEEEeCCCEEEEEeC-CCcEE-EEECCCC
Q 004214          437 VITASGDKTIKIWSISDGS-----CLKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVK-LWTVRTG  496 (768)
Q Consensus       437 l~t~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~-iwd~~~~  496 (768)
                      |+++-. .-.+|-+...+.     .......|.+-+..-.|.....+|++++- |+.++ +|-.-++
T Consensus       270 L~~CMh-~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  270 LAACMH-NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             HHHHHh-cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            444444 446777765542     33445567666666666444456777653 55544 6654444

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.35  E-value=1.4e-08  Score=104.48  Aligned_cols=292  Identities=15%  Similarity=0.149  Sum_probs=177.9

Q ss_pred             cEEEEEEc--CCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEe----cCeEEEEeeccCcccceeeEEEe
Q 004214          160 GIVRMWNA--DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA----DQQLLLYTTVEVPEKKMELILSK  233 (768)
Q Consensus       160 g~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~~~~~~~~~~~~~~~~~~~  233 (768)
                      +.|..|++  .++.+......         ........++++|++..++++..    .+.+..|.+.....   .+....
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~---------~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g---~L~~~~   80 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTV---------AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG---TLTLLN   80 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEE---------EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT---EEEEEE
T ss_pred             CcEEEEEEcCCCCCceEeeee---------cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc---eeEEee
Confidence            67888877  44443322211         12245567788899999988887    46888888876521   222222


Q ss_pred             eecccCCceeEEEEecCCCCEEEEE-eCCCcEEEEECCC-ceeeee---ee----------CCccceEEEeeeeecCCCE
Q 004214          234 RLVGYNEEILDLKFLGEEEQYLAVA-TNIEQVQVYDLSS-MSCSYV---LA----------GHSEIVLCLDTCALSSGKI  298 (768)
Q Consensus       234 ~~~~~~~~i~~~~~~~~~~~~l~~~-~~~~~i~i~d~~~-~~~~~~---~~----------~~~~~v~~l~~~~~~~~~~  298 (768)
                      ...........+++.+ ++.+++++ ..+|.|.++++.. +.....   +.          .......++.  +.|+++.
T Consensus        81 ~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~--~~pdg~~  157 (345)
T PF10282_consen   81 SVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVV--FSPDGRF  157 (345)
T ss_dssp             EEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEE--E-TTSSE
T ss_pred             eeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEE--ECCCCCE
Confidence            3332333445566664 55555555 4689999999986 433322   11          1123345555  7788888


Q ss_pred             EEEEEeCCCeEEEEeCCCce--EE--Eeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccccee
Q 004214          299 LIVTGSKDNSVRLWDSESRC--CV--GVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK  373 (768)
Q Consensus       299 ~l~~~~~dg~i~iwd~~~~~--~~--~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  373 (768)
                      ++++.-....|.+|++....  ..  ..+. .....-..++|+|+++.+.++.-.++.|.++++.....      .....
T Consensus       158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g------~~~~~  231 (345)
T PF10282_consen  158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG------SLTEI  231 (345)
T ss_dssp             EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT------EEEEE
T ss_pred             EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC------ceeEE
Confidence            66666666789999987654  32  2222 34456789999999887777777899999999872211      11111


Q ss_pred             eEee------ccCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCC--CC--ceEEEEeccCCCeEEEEEccCCCEEEEee-
Q 004214          374 AVVA------AHGKDINSLAVAPNDSLVCTGSQ-DRTACVWRLP--DL--VSVVTFRGHKRGIWSVEFSPVDQVVITAS-  441 (768)
Q Consensus       374 ~~~~------~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~--~~--~~~~~~~~~~~~v~~v~~s~~~~~l~t~~-  441 (768)
                      ....      ........++++|||++|.++.. .+.|.+|++.  ++  +.+..+.......+.++++|+|++|+++. 
T Consensus       232 ~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~  311 (345)
T PF10282_consen  232 QTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ  311 (345)
T ss_dssp             EEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred             EEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence            1111      11225788999999999888764 5679999983  23  33444444455689999999999999887 


Q ss_pred             CCCcEEEEeC--CCCceeEEee-cCCCcEEEEEE
Q 004214          442 GDKTIKIWSI--SDGSCLKTFE-GHTSSVLRASF  472 (768)
Q Consensus       442 ~d~~i~iwd~--~~~~~~~~~~-~~~~~v~~~~~  472 (768)
                      .++.|.+|++  .+|.+...-. ..-....|+.|
T Consensus       312 ~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  312 DSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             TTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             CCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            5678999976  4565443332 23344555655

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=6.3e-10  Score=118.16  Aligned_cols=235  Identities=14%  Similarity=0.085  Sum_probs=148.3

Q ss_pred             cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC--eEEEEeCCCceEEEeeecccCcEEEEEEecCCC
Q 004214          263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN--SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ  340 (768)
Q Consensus       263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  340 (768)
                      .+.++|...... +.+..+...+.+..  ++|+++.++++...++  .|++||+.+++.... ....+......|+|+|+
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~--wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~  274 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPA--WSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGK  274 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCce--ECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCC
Confidence            566677655443 34444555666666  7888887555544443  588889988765332 22233345789999998


Q ss_pred             cEEEEEeCCCe--EEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCceE
Q 004214          341 NFLVSGSSDHT--IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVSV  415 (768)
Q Consensus       341 ~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~~  415 (768)
                      .++++.+.+|.  |.++|+..+.           ......+.......+|+|||+.|+..+. ++  .|+++|+.+++..
T Consensus       275 ~La~~~~~~g~~~Iy~~dl~tg~-----------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~  343 (448)
T PRK04792        275 KLALVLSKDGQPEIYVVDIATKA-----------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS  343 (448)
T ss_pred             EEEEEEeCCCCeEEEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            77677777776  6666765431           1112223345567899999998877654 33  4777788777643


Q ss_pred             EEEeccCCCeEEEEEccCCCEEEEeeCC-C--cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCC-C--cEE
Q 004214          416 VTFRGHKRGIWSVEFSPVDQVVITASGD-K--TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-G--LVK  489 (768)
Q Consensus       416 ~~~~~~~~~v~~v~~s~~~~~l~t~~~d-~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g--~i~  489 (768)
                      . +..........+|+|+|++|+..+.+ +  .|.++|+.++... .+... .......|+|||++|+..+.+ |  .++
T Consensus       344 ~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~  420 (448)
T PRK04792        344 R-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLA  420 (448)
T ss_pred             E-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEE
Confidence            3 22222233457899999988776543 3  4566788777643 23222 122345799999988766543 3  377


Q ss_pred             EEECCCCeEEEEeccCCCcEEEEEEcC
Q 004214          490 LWTVRTGECIATYDKHEDKIWALAVGK  516 (768)
Q Consensus       490 iwd~~~~~~~~~~~~~~~~v~~l~~s~  516 (768)
                      +++. +|.....+..+.+.+...+|+|
T Consensus       421 ~~~~-~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        421 AVSI-DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             EEEC-CCCceEECcCCCCCcCCCccCC
Confidence            7776 6666777766667777888887

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=7.9e-10  Score=118.11  Aligned_cols=236  Identities=13%  Similarity=0.045  Sum_probs=150.3

Q ss_pred             cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC--CeEEEEeCCCceEEEeeecccCcEEEEEEecCCC
Q 004214          263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ  340 (768)
Q Consensus       263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  340 (768)
                      .|.++|...+.. ..+..+...+....  ++++++.++++...+  ..|.+||+.+++.... ....+.+....|+|+|+
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~--wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~  255 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPR--WSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGS  255 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeee--ECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCC
Confidence            477778775544 44555666777766  778888744444333  3689999988865443 22334456789999988


Q ss_pred             cEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCceE
Q 004214          341 NFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVSV  415 (768)
Q Consensus       341 ~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~~  415 (768)
                      .++++.+.+|  .|.+||+.++..           ..+..+........|+|||+.++..+. +|  .|+++++.+++..
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~~-----------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~  324 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQL-----------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE  324 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCCe-----------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            6666666666  577778765421           112223344566789999998876654 33  5777888777643


Q ss_pred             EEEeccCCCeEEEEEccCCCEEEEeeCC-C--cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCC-C--cEE
Q 004214          416 VTFRGHKRGIWSVEFSPVDQVVITASGD-K--TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-G--LVK  489 (768)
Q Consensus       416 ~~~~~~~~~v~~v~~s~~~~~l~t~~~d-~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g--~i~  489 (768)
                      . +...........|+|+|+.|+..+.+ +  .|.+||+.++... .+. +........|+|||++++..+.+ |  .|.
T Consensus       325 ~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~  401 (430)
T PRK00178        325 R-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLM  401 (430)
T ss_pred             E-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEE
Confidence            3 22222334467899999998877643 2  5888999887643 332 22222356899999998776653 3  467


Q ss_pred             EEECCCCeEEEEeccCCCcEEEEEEcCC
Q 004214          490 LWTVRTGECIATYDKHEDKIWALAVGKK  517 (768)
Q Consensus       490 iwd~~~~~~~~~~~~~~~~v~~l~~s~~  517 (768)
                      ++++. |.....+..+.+.+...+|+|-
T Consensus       402 ~~~~~-g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        402 LVSIN-GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             EEECC-CCceEECcCCCCCcCCCccCCC
Confidence            77774 4444455555666777778763

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.33  E-value=3.7e-10  Score=103.40  Aligned_cols=267  Identities=16%  Similarity=0.166  Sum_probs=180.4

Q ss_pred             CcEEEEECCCceeee---eeeCCccceEEEeeeeecCCCE-EEEEEeCCCeEEEEeCCCceEEEeeeccc------CcEE
Q 004214          262 EQVQVYDLSSMSCSY---VLAGHSEIVLCLDTCALSSGKI-LIVTGSKDNSVRLWDSESRCCVGVGTGHM------GAVG  331 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~---~~~~~~~~v~~l~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~  331 (768)
                      |.+.+|++...+...   ........+..+.|+..+.++. .++-+...|.|.++..........+.+-.      ....
T Consensus        46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l  125 (339)
T KOG0280|consen   46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL  125 (339)
T ss_pred             cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence            678888877654432   1122344455555555555444 56777788999999766544333333221      1234


Q ss_pred             EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCC
Q 004214          332 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLP  410 (768)
Q Consensus       332 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~  410 (768)
                      ++.|++.+. -++++-.+|.+.+-+....        ........+.|.-.+....|+. +.+++.+|+.|+.+..||++
T Consensus       126 slD~~~~~~-~i~vs~s~G~~~~v~~t~~--------~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R  196 (339)
T KOG0280|consen  126 SLDISTSGT-KIFVSDSRGSISGVYETEM--------VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR  196 (339)
T ss_pred             EEEeeccCc-eEEEEcCCCcEEEEeccee--------eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEec
Confidence            677888766 4788888888885554422        3344556788999999999987 55789999999999999998


Q ss_pred             -CCceEEE-EeccCCCeEEEEEcc-CCCEEEEeeCCCcEEEEeCCC-CceeEEeecCCCcEEEEEEEeCC--CEEEEEeC
Q 004214          411 -DLVSVVT-FRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLRASFLTRG--AQIVSCGA  484 (768)
Q Consensus       411 -~~~~~~~-~~~~~~~v~~v~~s~-~~~~l~t~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~~~  484 (768)
                       .++.+.. .+.|..+|.++.-+| .+.+++||+.|-.|++||.++ ++++..-. -.+.|.++.++|.-  ..|+++-.
T Consensus       197 ~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh  275 (339)
T KOG0280|consen  197 IPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMH  275 (339)
T ss_pred             CCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHh
Confidence             3344433 556889999998887 478999999999999999984 66665544 44889999999853  34555555


Q ss_pred             CCcEEEEECCCC--e---EEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCcEE-EEEcCCHH
Q 004214          485 DGLVKLWTVRTG--E---CIATYDKHEDKIWALAVGKKTEMFATGG-SDALVN-LWHDSTAA  539 (768)
Q Consensus       485 dg~i~iwd~~~~--~---~~~~~~~~~~~v~~l~~s~~~~~l~s~~-~dg~v~-vw~~~~~~  539 (768)
                      +| .+|-+...+  +   .......|.+-+..-.|......|+|++ .|..++ +|-..+++
T Consensus       276 ~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  276 NG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE  336 (339)
T ss_pred             cC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence            55 566665543  3   3344556776666666755556788865 677744 88766653

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=8.9e-10  Score=115.97  Aligned_cols=220  Identities=11%  Similarity=0.028  Sum_probs=137.7

Q ss_pred             CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc--EEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCC
Q 004214          307 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN--FLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD  382 (768)
Q Consensus       307 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (768)
                      ..|.+.|...+.... +........+-.|+|+|+.  ++++...+|  .|.+.++..+..           ..+......
T Consensus       165 ~~l~~~d~dG~~~~~-lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-----------~~lt~~~g~  232 (428)
T PRK01029        165 GELWSVDYDGQNLRP-LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-----------KKILALQGN  232 (428)
T ss_pred             ceEEEEcCCCCCceE-cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-----------eEeecCCCC
Confidence            467777776654433 3334556677899999876  333444444  466667764421           111222334


Q ss_pred             eEEEEEccCCCEEEEEeC-CC----cEEEEeCCCC---ceEEEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEE--eC
Q 004214          383 INSLAVAPNDSLVCTGSQ-DR----TACVWRLPDL---VSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIW--SI  451 (768)
Q Consensus       383 i~~~~~s~~~~~l~~~~~-dg----~i~i~d~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iw--d~  451 (768)
                      ....+|+|||+.|+..+. +|    .+..|++..+   .......++.......+|+|||+.|+..+ .+|...||  ++
T Consensus       233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~  312 (428)
T PRK01029        233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI  312 (428)
T ss_pred             ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence            456899999998887653 23    3444676652   33333333333456789999999777655 45654555  44


Q ss_pred             CC-CceeEEeecCCCcEEEEEEEeCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-
Q 004214          452 SD-GSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS-  526 (768)
Q Consensus       452 ~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~-  526 (768)
                      .. +.....+..+...+....|+|||++|+..+.+   ..|.+||+.+++...... ....+....|+|||+.|+..+. 
T Consensus       313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~  391 (428)
T PRK01029        313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGN  391 (428)
T ss_pred             cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECC
Confidence            32 33345555455667789999999998876543   369999999887654333 3345678899999998875443 


Q ss_pred             --CCcEEEEEcCCHH
Q 004214          527 --DALVNLWHDSTAA  539 (768)
Q Consensus       527 --dg~v~vw~~~~~~  539 (768)
                        .+.|.+|++.+++
T Consensus       392 ~g~~~L~~vdl~~g~  406 (428)
T PRK01029        392 SNESELYLISLITKK  406 (428)
T ss_pred             CCCceEEEEECCCCC
Confidence              3458888877653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.31  E-value=2.3e-08  Score=99.58  Aligned_cols=280  Identities=13%  Similarity=0.046  Sum_probs=170.3

Q ss_pred             CcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEe--------CCCcEEEEECCCCeeEEEecCccc------
Q 004214           10 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS--------DDATVRVWDLLAKKCVATLDKHFS------   75 (768)
Q Consensus        10 g~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~--------~dg~I~iWd~~~~~~~~~l~~h~~------   75 (768)
                      ++|.|.|..+++.+..+..-..+-. + +||||+..+++...        .+..|.+||..+++.+..+.-...      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            8999999999998888874333322 4 99999985555441        577899999999999988874222      


Q ss_pred             -eeEEEEEcCCCCEEEEEe-C-CCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceE
Q 004214           76 -RVTSMAITSDGSTLISAG-R-DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH  152 (768)
Q Consensus        76 -~V~~l~fs~d~~~L~s~~-~-dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (768)
                       ....++++|||++|+... . +..|.+.|+.+++.+..++......-+.....                         .
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~-------------------------~  159 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAND-------------------------T  159 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCC-------------------------c
Confidence             234789999999999776 3 68999999999999999887543222222221                         1


Q ss_pred             EEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEE
Q 004214          153 FITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS  232 (768)
Q Consensus       153 ~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~  232 (768)
                      +...+.||......++............   +..+ ...-+..-.+.+.+...+.++..|.+.+.++.............
T Consensus       160 ~~~~~~Dg~~~~v~~d~~g~~~~~~~~v---f~~~-~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~  235 (352)
T TIGR02658       160 FFMHCRDGSLAKVGYGTKGNPKIKPTEV---FHPE-DEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEA  235 (352)
T ss_pred             cEEEeecCceEEEEecCCCceEEeeeee---ecCC-ccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeee
Confidence            2233444444443332221111000000   0000 00000001345645566666666999999865433211111000


Q ss_pred             eeec----c-cCCceeEEEEecCCCCEEEEE---------eCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCC-
Q 004214          233 KRLV----G-YNEEILDLKFLGEEEQYLAVA---------TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK-  297 (768)
Q Consensus       233 ~~~~----~-~~~~i~~~~~~~~~~~~l~~~---------~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-  297 (768)
                      ....    + ..+.+.-++++++.+..++..         ...+.|.++|..+++.+..+.. ...+..+.  ++++++ 
T Consensus       236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~ia--vS~Dgkp  312 (352)
T TIGR02658       236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSIN--VSQDAKP  312 (352)
T ss_pred             ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEE--ECCCCCe
Confidence            0000    1 122233377775444444433         2235899999999999988764 23666776  788888 


Q ss_pred             EEEEEEeCCCeEEEEeCCCceEEEee
Q 004214          298 ILIVTGSKDNSVRLWDSESRCCVGVG  323 (768)
Q Consensus       298 ~~l~~~~~dg~i~iwd~~~~~~~~~~  323 (768)
                      .++++...++.|.++|..+++.+..+
T Consensus       313 ~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       313 LLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEEeCCCCCcEEEEECcCCeEEeee
Confidence            54445557889999999999888876

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=1.7e-09  Score=113.79  Aligned_cols=244  Identities=11%  Similarity=0.043  Sum_probs=149.0

Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCE--EEEEEeCCC--eEEEEeCCCceEEEeeecccCcEEEEEEec
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI--LIVTGSKDN--SVRLWDSESRCCVGVGTGHMGAVGAVAFSK  337 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  337 (768)
                      ..|.+.|...+.... +.........-.  |+|+++.  ++++...+|  .|.+.++.+++..... ...+......|+|
T Consensus       165 ~~l~~~d~dG~~~~~-lt~~~~~~~sP~--wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSP  240 (428)
T PRK01029        165 GELWSVDYDGQNLRP-LTQEHSLSITPT--WMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSP  240 (428)
T ss_pred             ceEEEEcCCCCCceE-cccCCCCcccce--EccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECC
Confidence            467777776555443 333333344444  7788765  233444443  5777788877644332 2344556789999


Q ss_pred             CCCcEEEEEeCCC----eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEE--eCC
Q 004214          338 KLQNFLVSGSSDH----TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVW--RLP  410 (768)
Q Consensus       338 ~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~--d~~  410 (768)
                      ||+.++++...+|    .+..|++..+..       .................+|+|||+.|+..+ .+|...+|  ++.
T Consensus       241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~-------g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~  313 (428)
T PRK01029        241 RKKLLAFISDRYGNPDLFIQSFSLETGAI-------GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID  313 (428)
T ss_pred             CCCEEEEEECCCCCcceeEEEeecccCCC-------CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence            9986666654433    334466553210       011122222223346789999999887765 45654444  443


Q ss_pred             C-CceEEEEeccCCCeEEEEEccCCCEEEEeeCC---CcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeC--
Q 004214          411 D-LVSVVTFRGHKRGIWSVEFSPVDQVVITASGD---KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA--  484 (768)
Q Consensus       411 ~-~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--  484 (768)
                      . +.....+..+...+....|||||+.|+..+.+   ..|.+||+.+++...... ....+....|+|||++|+....  
T Consensus       314 ~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~  392 (428)
T PRK01029        314 PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNS  392 (428)
T ss_pred             ccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCC
Confidence            2 23344455555677889999999988876543   469999998887644332 3445677899999998875443  


Q ss_pred             -CCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCC
Q 004214          485 -DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT  518 (768)
Q Consensus       485 -dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~  518 (768)
                       ...|+++|+.+++...... ..+.+...+|+|-.
T Consensus       393 g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~  426 (428)
T PRK01029        393 NESELYLISLITKKTRKIVI-GSGEKRFPSWGAFP  426 (428)
T ss_pred             CCceEEEEECCCCCEEEeec-CCCcccCceecCCC
Confidence             3468899998877554443 45556677888753

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.30  E-value=1.2e-09  Score=116.77  Aligned_cols=205  Identities=14%  Similarity=0.058  Sum_probs=139.3

Q ss_pred             CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC---CeEEEEeCCCCCCCCccccccceeeEeeccCCCe
Q 004214          307 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD---HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI  383 (768)
Q Consensus       307 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i  383 (768)
                      ..|.++|...... ..+..+...+...+|+|+|+. ++.++.+   ..|.+||+..+.           ......+...+
T Consensus       170 ~~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~-la~~~~~~~~~~i~v~d~~~g~-----------~~~~~~~~~~~  236 (417)
T TIGR02800       170 YELQVADYDGANP-QTITRSREPILSPAWSPDGQK-LAYVSFESGKPEIYVQDLATGQ-----------REKVASFPGMN  236 (417)
T ss_pred             ceEEEEcCCCCCC-EEeecCCCceecccCCCCCCE-EEEEEcCCCCcEEEEEECCCCC-----------EEEeecCCCCc
Confidence            3688888764433 334456667889999999885 4444432   479999987542           11122344556


Q ss_pred             EEEEEccCCCEEEEE-eCCC--cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC-CC--cEEEEeCCCCcee
Q 004214          384 NSLAVAPNDSLVCTG-SQDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DK--TIKIWSISDGSCL  457 (768)
Q Consensus       384 ~~~~~s~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d~--~i~iwd~~~~~~~  457 (768)
                      .+++|+|+|+.|+.. +.++  .|++|++.++... .+..+........|+|+|+.|+..+. ++  .|.++|+.+++. 
T Consensus       237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-  314 (417)
T TIGR02800       237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-  314 (417)
T ss_pred             cceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-
Confidence            678999999877654 4444  5888998876543 34445455567899999998876654 23  688888877654 


Q ss_pred             EEeecCCCcEEEEEEEeCCCEEEEEeCCC---cEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214          458 KTFEGHTSSVLRASFLTRGAQIVSCGADG---LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA  528 (768)
Q Consensus       458 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg  528 (768)
                      ..+..+...+....|+|+|++++.++.++   .|.+||+.++.... +... .......|+|+|++|+..+.++
T Consensus       315 ~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       315 RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCC
Confidence            34444556677889999999999888775   78999998865433 2222 2334568999999988877654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.29  E-value=3.4e-11  Score=134.64  Aligned_cols=198  Identities=19%  Similarity=0.288  Sum_probs=154.2

Q ss_pred             eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeC
Q 004214          279 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF  357 (768)
Q Consensus       279 ~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  357 (768)
                      ..+-..|.++.  ..|... +.++|+.||.+++|....++.+..+. .-...|+.+.|+.+|+ -+..+..||.+.+|..
T Consensus      2205 k~~v~~v~r~~--sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn-k~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2205 KHPVENVRRMT--SHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN-KFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred             ecccCceeeec--CCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC-ceeeeccCCceeeccc
Confidence            34556677775  444444 48999999999999998887776654 2337899999999987 4788889999999987


Q ss_pred             CCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe---CCCcEEEEeCCC-CceEEEEeccCCCeEEEEEccC
Q 004214          358 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS---QDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPV  433 (768)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~i~d~~~-~~~~~~~~~~~~~v~~v~~s~~  433 (768)
                      .           .++......|+.....+.|-.  ..+++++   .++.+.+||.-- +..-..-..|...++++++-|.
T Consensus      2281 ~-----------pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~ 2347 (2439)
T KOG1064|consen 2281 S-----------PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPK 2347 (2439)
T ss_pred             C-----------CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCc
Confidence            6           224455577888888888765  5666654   467999999632 1111222779999999999999


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 004214          434 DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD  503 (768)
Q Consensus       434 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  503 (768)
                      .++|++|+.+|.|++||++..+.+++++.         +. ...++++|+..|.++||++.....+.++.
T Consensus      2348 ~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2348 HQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             ceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            99999999999999999998888877764         33 56799999999999999998887777664

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=1.7e-09  Score=115.61  Aligned_cols=213  Identities=12%  Similarity=0.008  Sum_probs=137.5

Q ss_pred             eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC--CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214          308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS  385 (768)
Q Consensus       308 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  385 (768)
                      .|.++|...+.. ..+..+...+....|+|+|+.++++...+  ..|.+|++..+..           ..+......+..
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-----------~~l~~~~g~~~~  247 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-----------EQITNFEGLNGA  247 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-----------EEccCCCCCcCC
Confidence            477778776544 33445667889999999987544444333  3688889875421           111112233456


Q ss_pred             EEEccCCCEEEE-EeCCC--cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC-C--CcEEEEeCCCCceeEE
Q 004214          386 LAVAPNDSLVCT-GSQDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-D--KTIKIWSISDGSCLKT  459 (768)
Q Consensus       386 ~~~s~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d--~~i~iwd~~~~~~~~~  459 (768)
                      ..|+|||+.|+. ...+|  .|++||+.+++.. .+..+........|+|+|+.|+..+. +  ..|+++|+.+++....
T Consensus       248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l  326 (430)
T PRK00178        248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV  326 (430)
T ss_pred             eEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence            899999998874 44455  5888899887654 34445556677899999998776553 3  3588888877764332


Q ss_pred             eecCCCcEEEEEEEeCCCEEEEEeCC-C--cEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-C--cEEEE
Q 004214          460 FEGHTSSVLRASFLTRGAQIVSCGAD-G--LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD-A--LVNLW  533 (768)
Q Consensus       460 ~~~~~~~v~~~~~s~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d-g--~v~vw  533 (768)
                      .. .........|+|+|++|+..+.+ +  .|.+||+.+++... +. +........|+|+|++++..+.+ |  .|.++
T Consensus       327 t~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~  403 (430)
T PRK00178        327 TF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLV  403 (430)
T ss_pred             ec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence            21 22233457899999999877653 3  58889998876533 22 12222356899999998876643 3  35555


Q ss_pred             EcC
Q 004214          534 HDS  536 (768)
Q Consensus       534 ~~~  536 (768)
                      +..
T Consensus       404 ~~~  406 (430)
T PRK00178        404 SIN  406 (430)
T ss_pred             ECC
Confidence            554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.25  E-value=8.4e-08  Score=91.54  Aligned_cols=267  Identities=9%  Similarity=0.101  Sum_probs=171.1

Q ss_pred             CCcEEEEECCCceeee---eeeCCccceEEEeeeeecCCCEEEEEEeC---CCeEEEEeCCC--ceEEE--eeecccCcE
Q 004214          261 IEQVQVYDLSSMSCSY---VLAGHSEIVLCLDTCALSSGKILIVTGSK---DNSVRLWDSES--RCCVG--VGTGHMGAV  330 (768)
Q Consensus       261 ~~~i~i~d~~~~~~~~---~~~~~~~~v~~l~~~~~~~~~~~l~~~~~---dg~i~iwd~~~--~~~~~--~~~~~~~~v  330 (768)
                      +..|++|++.+..-..   .+..+...++-++  +.++.+. |.++..   +|.|..|.+..  |+...  .......+-
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~--~~~~~~~-LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p   91 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLA--VNPDQRH-LYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP   91 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEE--ECCCCCE-EEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence            5789999987432211   2233445556665  6666666 555543   57777776654  54332  222233344


Q ss_pred             EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCC----------eEEEEEccCCCEEEEEeC
Q 004214          331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD----------INSLAVAPNDSLVCTGSQ  400 (768)
Q Consensus       331 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~s~~~~~l~~~~~  400 (768)
                      ..++++++++.++++.-.-|.|.++-+.......       .......|...          +-...+.|++++|++.+.
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~-------~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL  164 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ-------PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL  164 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccc-------cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence            8899999987444444456899999886532111       11111122222          678889999999988764


Q ss_pred             -CCcEEEEeCCCCceEEEEe---ccCCCeEEEEEccCCCEEEEeeC-CCcEEEEeCCCC-ceeEEee---------cCCC
Q 004214          401 -DRTACVWRLPDLVSVVTFR---GHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISDG-SCLKTFE---------GHTS  465 (768)
Q Consensus       401 -dg~i~i~d~~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~t~~~-d~~i~iwd~~~~-~~~~~~~---------~~~~  465 (768)
                       --.|.+|++..++....-.   ........|.|+|++++..+.++ +++|-+|..... ..+..++         .-..
T Consensus       165 G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~  244 (346)
T COG2706         165 GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN  244 (346)
T ss_pred             CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCC
Confidence             2369999998776433211   24556789999999999887765 899999998763 2222222         1234


Q ss_pred             cEEEEEEEeCCCEEEEEeC-CCcEEEEECCC--Ce--EEEEeccCCCcEEEEEEcCCCCEEEEEeCCC-cEEEEEcCC
Q 004214          466 SVLRASFLTRGAQIVSCGA-DGLVKLWTVRT--GE--CIATYDKHEDKIWALAVGKKTEMFATGGSDA-LVNLWHDST  537 (768)
Q Consensus       466 ~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~--~~--~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg-~v~vw~~~~  537 (768)
                      +...+.+++||++|.++.. ...|-+|.+..  ++  .+.....+......+.|+|.|++|++++.++ .|.+|.++.
T Consensus       245 ~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         245 WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence            6677899999999988765 33788887754  32  2223333444467899999999999998654 588887654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=8.5e-09  Score=109.58  Aligned_cols=213  Identities=11%  Similarity=0.031  Sum_probs=133.6

Q ss_pred             eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214          308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS  385 (768)
Q Consensus       308 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  385 (768)
                      .|.++|...... ..+..+...+.+..|+|+|+.++++...++  .|.+||+..+..          . ...........
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~----------~-~lt~~~g~~~~  266 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR----------E-KVTSFPGINGA  266 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe----------E-EecCCCCCcCC
Confidence            566777765433 334456678889999999886555544444  577788765421          1 11111223346


Q ss_pred             EEEccCCCEEEE-EeCCCc--EEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC-C--CcEEEEeCCCCceeEE
Q 004214          386 LAVAPNDSLVCT-GSQDRT--ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-D--KTIKIWSISDGSCLKT  459 (768)
Q Consensus       386 ~~~s~~~~~l~~-~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d--~~i~iwd~~~~~~~~~  459 (768)
                      .+|+|||+.|+. .+.+|.  |+++|+.+++.. .+..+.......+|+|||+.|+..+. +  ..|.++|+.+++....
T Consensus       267 ~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L  345 (448)
T PRK04792        267 PRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL  345 (448)
T ss_pred             eeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE
Confidence            899999998765 455664  778888877543 34445556678899999998876553 3  3577778877765432


Q ss_pred             eecCCCcEEEEEEEeCCCEEEEEeC-CC--cEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-CCc--EEEE
Q 004214          460 FEGHTSSVLRASFLTRGAQIVSCGA-DG--LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS-DAL--VNLW  533 (768)
Q Consensus       460 ~~~~~~~v~~~~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~-dg~--v~vw  533 (768)
                       ...........|+|||++|+..+. ++  .|.++|+.+++... +... .......|+|+|++|+..+. +|.  +.++
T Consensus       346 -t~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~  422 (448)
T PRK04792        346 -TFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAV  422 (448)
T ss_pred             -ecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence             212223345789999999877655 34  45667888876533 2212 12224579999998876554 343  5556


Q ss_pred             EcC
Q 004214          534 HDS  536 (768)
Q Consensus       534 ~~~  536 (768)
                      +..
T Consensus       423 ~~~  425 (448)
T PRK04792        423 SID  425 (448)
T ss_pred             ECC
Confidence            653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.20  E-value=1.9e-08  Score=116.83  Aligned_cols=247  Identities=14%  Similarity=0.172  Sum_probs=158.5

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeCCCceEEEeee-cc------------cCcEEEEEEecCCCcEEEEEeCCCeEEEEeCC
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GH------------MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD  358 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~------------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~  358 (768)
                      ..+.++.++++-+.++.|++||........... +.            -.....+++++++..++++-..++.|+.+|+.
T Consensus       575 vd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~  654 (1057)
T PLN02919        575 IDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFV  654 (1057)
T ss_pred             EECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecC
Confidence            444556667777888999999986543322211 11            12357889998866555655667889999876


Q ss_pred             CCCCCCccc-----cccceeeE-eeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEecc----------
Q 004214          359 GLSDDAEQP-----MNLKAKAV-VAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGH----------  421 (768)
Q Consensus       359 ~~~~~~~~~-----~~~~~~~~-~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------  421 (768)
                      .........     ........ ....-.....++++| ++.++++.+.++.|++||..++... .+.+.          
T Consensus       655 ~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~  733 (1057)
T PLN02919        655 NETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSS  733 (1057)
T ss_pred             CCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCc
Confidence            431100000     00000000 000012346899999 5667777778899999998776432 22111          


Q ss_pred             -----CCCeEEEEEccCCC-EEEEeeCCCcEEEEeCCCCceeEEe-------------ecC--------CCcEEEEEEEe
Q 004214          422 -----KRGIWSVEFSPVDQ-VVITASGDKTIKIWSISDGSCLKTF-------------EGH--------TSSVLRASFLT  474 (768)
Q Consensus       422 -----~~~v~~v~~s~~~~-~l~t~~~d~~i~iwd~~~~~~~~~~-------------~~~--------~~~v~~~~~s~  474 (768)
                           -...+.++++|+++ ++++-+.++.|++||+.++......             ..+        -.....+++++
T Consensus       734 ~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~  813 (1057)
T PLN02919        734 GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK  813 (1057)
T ss_pred             cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC
Confidence                 12356799999988 4555566799999999876532111             000        11345789999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEec-------------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHH
Q 004214          475 RGAQIVSCGADGLVKLWTVRTGECIATYD-------------KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA  539 (768)
Q Consensus       475 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~  539 (768)
                      +|+.+++-..++.|++||..++.......             +.-.....++++++|+.+++-+.++.|++|++.+++
T Consensus       814 dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        814 DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            99988888889999999998877654321             111246789999999999999999999999998754

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.19  E-value=8.6e-11  Score=131.54  Aligned_cols=191  Identities=15%  Similarity=0.287  Sum_probs=154.4

Q ss_pred             ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCc
Q 004214          324 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT  403 (768)
Q Consensus       324 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  403 (768)
                      ..+-..|.++.-+|... +.++|+.||.|++|....+..         ...........|+.+.|+.+|+.+..+..||.
T Consensus      2205 k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~---------v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~ 2274 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQ---------VVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGD 2274 (2439)
T ss_pred             ecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCe---------EEEeeccCcchhhhhhhcccCCceeeeccCCc
Confidence            34556677888888755 789999999999998875421         11122223378899999999999999999999


Q ss_pred             EEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee---CCCcEEEEeCCC---CceeEEeecCCCcEEEEEEEeCCC
Q 004214          404 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS---GDKTIKIWSISD---GSCLKTFEGHTSSVLRASFLTRGA  477 (768)
Q Consensus       404 i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~---~d~~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~  477 (768)
                      +.+|... .++....+.|....+.+.|-.  ..+++++   .++.+.+||..-   ..++.  ..|.+.++++++.|..+
T Consensus      2275 l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~q 2349 (2439)
T KOG1064|consen 2275 LSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQ 2349 (2439)
T ss_pred             eeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcce
Confidence            9999987 667777888999999999984  6677765   478999999532   23444  67999999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHH
Q 004214          478 QIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA  539 (768)
Q Consensus       478 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~  539 (768)
                      .|++||.+|.|++||++..+.++++..         +. ...++++|+..|.++||++....
T Consensus      2350 llisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2350 LLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             EEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccc
Confidence            999999999999999999888877764         44 67799999999999999998754

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.19  E-value=3.6e-08  Score=114.53  Aligned_cols=253  Identities=13%  Similarity=0.087  Sum_probs=162.1

Q ss_pred             eEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeC--C------------ccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214          243 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG--H------------SEIVLCLDTCALSSGKILIVTGSKDNS  308 (768)
Q Consensus       243 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~------------~~~v~~l~~~~~~~~~~~l~~~~~dg~  308 (768)
                      ..+++.+.++.++++-+.++.|++||..... +..+.+  .            -.....++  +.++++.++++-..++.
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIa--vd~~gn~LYVaDt~n~~  647 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLA--YNAKKNLLYVADTENHA  647 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEE--EeCCCCEEEEEeCCCce
Confidence            3466666667777777888999999986543 323322  1            11234554  55666664555566688


Q ss_pred             EEEEeCCCceEEEeee-cc---------------cCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcc----cc
Q 004214          309 VRLWDSESRCCVGVGT-GH---------------MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ----PM  368 (768)
Q Consensus       309 i~iwd~~~~~~~~~~~-~~---------------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~  368 (768)
                      |+.+|..++....... +.               -..-..++++|++..++++.+.++.|++||...+......    ..
T Consensus       648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            9999988765432211 00               1123578999966667888888999999998654210000    00


Q ss_pred             ccceeeEeeccCCCeEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceEEEEec---------------------cCCCeE
Q 004214          369 NLKAKAVVAAHGKDINSLAVAPNDSL-VCTGSQDRTACVWRLPDLVSVVTFRG---------------------HKRGIW  426 (768)
Q Consensus       369 ~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~---------------------~~~~v~  426 (768)
                      ...........-.....++++|+++. +++-+.++.|++||+.++.......+                     .-....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence            00000000011234678999999884 45556678999999987653211100                     011246


Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee-------------cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214          427 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-------------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       427 ~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  493 (768)
                      .++++++|+++++-..++.|++||..++.......             +.-.....++++++|+.+++-+.++.|++||+
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            88999999999998999999999998776543221             11235678999999998888888999999999


Q ss_pred             CCCeE
Q 004214          494 RTGEC  498 (768)
Q Consensus       494 ~~~~~  498 (768)
                      .+++.
T Consensus       888 ~~~~~  892 (1057)
T PLN02919        888 NKGEA  892 (1057)
T ss_pred             CCCcc
Confidence            88764

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.18  E-value=8.1e-09  Score=93.43  Aligned_cols=225  Identities=16%  Similarity=0.059  Sum_probs=152.7

Q ss_pred             EEEEEeCCCeEEEEeCCCceE-EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee
Q 004214          299 LIVTGSKDNSVRLWDSESRCC-VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA  377 (768)
Q Consensus       299 ~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  377 (768)
                      .|+.|+..|...+|...+.+. +.....|...|+-+.-.-+...-+..++.|.++++.++.......            .
T Consensus        86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~------------~  153 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF------------A  153 (344)
T ss_pred             EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc------------e
Confidence            389999999999999986543 333333444333322222223347778899999999887542211            1


Q ss_pred             ccC--CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceE-E-EEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 004214          378 AHG--KDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSV-V-TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS  452 (768)
Q Consensus       378 ~~~--~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~-~-~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~  452 (768)
                      .|.  -.+.+++++++++++++.+....|..|.++.. +.+ . .....+..-.+..|+.....+|++..||++.|||++
T Consensus       154 ~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR  233 (344)
T KOG4532|consen  154 VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVR  233 (344)
T ss_pred             eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEec
Confidence            122  23789999999999999999999999998653 222 2 233345566788999999999999999999999998


Q ss_pred             CCc-eeE----EeecCCCcEEEEEEEeCCC--EEEEEeCCCcEEEEECCCCeEEEEecc-------CCC-cEEEEEEcCC
Q 004214          453 DGS-CLK----TFEGHTSSVLRASFLTRGA--QIVSCGADGLVKLWTVRTGECIATYDK-------HED-KIWALAVGKK  517 (768)
Q Consensus       453 ~~~-~~~----~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~-~v~~l~~s~~  517 (768)
                      ... +..    +-..|.+.+..+.|++.|.  +|+..-.-+.+.+-|++++...+.+..       |.. .|..-.|+.+
T Consensus       234 ~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~  313 (344)
T KOG4532|consen  234 NMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNE  313 (344)
T ss_pred             ccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCC
Confidence            753 322    2236899999999998665  455555557899999999876655432       222 2666777777


Q ss_pred             CCEEEEEeCCCcEEEEEcC
Q 004214          518 TEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       518 ~~~l~s~~~dg~v~vw~~~  536 (768)
                      +.-+.+..++. +.=|++.
T Consensus       314 n~s~~v~~e~~-~ae~ni~  331 (344)
T KOG4532|consen  314 NESNDVKNELQ-GAEYNIL  331 (344)
T ss_pred             Ccccccccchh-hheeecc
Confidence            66655555442 3444443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.17  E-value=1.9e-10  Score=113.81  Aligned_cols=289  Identities=16%  Similarity=0.239  Sum_probs=197.7

Q ss_pred             EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC-------ceeeeeeeCCccceEEEeeeeecCCCEEEEE
Q 004214          230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-------MSCSYVLAGHSEIVLCLDTCALSSGKILIVT  302 (768)
Q Consensus       230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-------~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~  302 (768)
                      .......||...|..+... ++++.+++++.|.+|++|.+..       ..+..+++.|..+|..+.  +..+.+. ++ 
T Consensus       726 irL~nf~GH~~~iRai~Ai-dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~ig--fL~~lr~-i~-  800 (1034)
T KOG4190|consen  726 IRLCNFTGHQEKIRAIAAI-DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIG--FLADLRS-IA-  800 (1034)
T ss_pred             eeeecccCcHHHhHHHHhc-ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCccccee--eeeccce-ee-
Confidence            3445677888888888776 4778899999999999999863       347778899999999997  5555544 44 


Q ss_pred             EeCCCeEEEEeCCCceEEEeee--cccCcEEEEEEecC-CCcEEEEE-eCCCeEEEEeCCCCCCCCccccccceeeEeec
Q 004214          303 GSKDNSVRLWDSESRCCVGVGT--GHMGAVGAVAFSKK-LQNFLVSG-SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA  378 (768)
Q Consensus       303 ~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  378 (768)
                       +.||.|++||.--++++....  ...+.+..+..-++ .+.++++| +...+|+++|.+...-..+.     ......+
T Consensus       801 -ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~-----kVcna~~  874 (1034)
T KOG4190|consen  801 -SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCEL-----KVCNAPG  874 (1034)
T ss_pred             -eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeE-----EeccCCC
Confidence             458999999988777665332  12233333333343 34455555 77899999998854311100     0111123


Q ss_pred             cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEE-EeCCCCcee
Q 004214          379 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKI-WSISDGSCL  457 (768)
Q Consensus       379 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~i-wd~~~~~~~  457 (768)
                      .+.-++++++.|.|+.++++-.+|+|.+.|.++|+.+...+........++ .|.++.|+....|.++.+ |...+|...
T Consensus       875 Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh  953 (1034)
T KOG4190|consen  875 PNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMH  953 (1034)
T ss_pred             CchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeee
Confidence            345688999999999999999999999999999999887776555444444 466778888888899999 988888776


Q ss_pred             EEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC-C---CeEEEEe--ccCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 004214          458 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR-T---GECIATY--DKHEDKIWALAVGKKTEMFATGGSDALVN  531 (768)
Q Consensus       458 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~-~---~~~~~~~--~~~~~~v~~l~~s~~~~~l~s~~~dg~v~  531 (768)
                      .+.+....+..-+  -.-|.-|+++.....+.+|.-. .   ...+..+  +...+..++++.-|-...+.+|.+.|.|.
T Consensus       954 ~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~Ia 1031 (1034)
T KOG4190|consen  954 LQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIA 1031 (1034)
T ss_pred             eccCCCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCcee
Confidence            6665443332211  1235567776666667777321 0   1112222  23567788999999888888999999887


Q ss_pred             E
Q 004214          532 L  532 (768)
Q Consensus       532 v  532 (768)
                      +
T Consensus      1032 L 1032 (1034)
T KOG4190|consen 1032 L 1032 (1034)
T ss_pred             e
Confidence            5

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.16  E-value=1.5e-08  Score=91.84  Aligned_cols=233  Identities=10%  Similarity=0.030  Sum_probs=153.1

Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeee-eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCc
Q 004214          251 EEQYLAVATNIEQVQVYDLSSMSCSY-VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA  329 (768)
Q Consensus       251 ~~~~l~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  329 (768)
                      ...+||.|+..|...+|...+.+... ....|...|.-..  -..+...-+..++.|.++++.++..+..........-.
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~--r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~  160 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK--RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLT  160 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhh--hhcccccceeeccCCcceeEEEEecCcccceeeccccc
Confidence            45689999999999999998765433 3344444443332  11122222667778888888887654433222212223


Q ss_pred             EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004214          330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL  409 (768)
Q Consensus       330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~  409 (768)
                      +.+++++++++ ++++.+....|..|.++....       ...........+.--+..|+.....+|++++||++.|||+
T Consensus       161 ~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~se-------y~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DV  232 (344)
T KOG4532|consen  161 QNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESE-------YIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDV  232 (344)
T ss_pred             eeeeEEcCCCc-eEEEecCCCcceEEEeCCccc-------eeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEe
Confidence            78899999966 888889999999999885432       1112233344455567889999999999999999999999


Q ss_pred             CCCceEE-----EEeccCCCeEEEEEccCC--CEEEEeeCCCcEEEEeCCCCceeEEee-------cCCC-cEEEEEEEe
Q 004214          410 PDLVSVV-----TFRGHKRGIWSVEFSPVD--QVVITASGDKTIKIWSISDGSCLKTFE-------GHTS-SVLRASFLT  474 (768)
Q Consensus       410 ~~~~~~~-----~~~~~~~~v~~v~~s~~~--~~l~t~~~d~~i~iwd~~~~~~~~~~~-------~~~~-~v~~~~~s~  474 (768)
                      +......     +-..|.+.+..+.|++.|  .+|+..-.=+.+.+.|++++.-.+.+.       .|.. .|..-.|+.
T Consensus       233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~  312 (344)
T KOG4532|consen  233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN  312 (344)
T ss_pred             cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC
Confidence            8654322     223488999999999865  345555555889999999987555443       2322 377777777


Q ss_pred             CCCEEEEEeCCCcEEEEECC
Q 004214          475 RGAQIVSCGADGLVKLWTVR  494 (768)
Q Consensus       475 ~~~~l~s~~~dg~i~iwd~~  494 (768)
                      ++.-+.+.+++. +.=|++.
T Consensus       313 ~n~s~~v~~e~~-~ae~ni~  331 (344)
T KOG4532|consen  313 ENESNDVKNELQ-GAEYNIL  331 (344)
T ss_pred             CCcccccccchh-hheeecc
Confidence            766665555432 3344443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=1.7e-08  Score=100.61  Aligned_cols=128  Identities=14%  Similarity=0.112  Sum_probs=81.3

Q ss_pred             eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeC--CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214          308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS--DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS  385 (768)
Q Consensus       308 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  385 (768)
                      .+.|+.++........-.-...|...+|-|.|..+.+..+.  ..++.+|.+.....      .  ...+..-.....+.
T Consensus       426 n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~------~--~~lVk~~dk~~~N~  497 (698)
T KOG2314|consen  426 NLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK------K--PSLVKELDKKFANT  497 (698)
T ss_pred             eEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC------c--hhhhhhhcccccce
Confidence            45566655443332223356788899999998876554444  35688888774211      1  11111112255788


Q ss_pred             EEEccCCCEEEEEe---CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCC
Q 004214          386 LAVAPNDSLVCTGS---QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD  443 (768)
Q Consensus       386 ~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d  443 (768)
                      +.|+|.|++++++.   ..|.+.++|+.-.....+-.......+.+.|.|.|++++|++..
T Consensus       498 vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~  558 (698)
T KOG2314|consen  498 VFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSS  558 (698)
T ss_pred             EEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeeh
Confidence            99999999988765   46889999987432222222222356789999999999998763

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.12  E-value=8e-07  Score=85.03  Aligned_cols=291  Identities=11%  Similarity=0.110  Sum_probs=175.7

Q ss_pred             cCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC--CCcEEEEECCC--ceeeee--eeCCccc
Q 004214          211 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN--IEQVQVYDLSS--MSCSYV--LAGHSEI  284 (768)
Q Consensus       211 dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--~~~i~i~d~~~--~~~~~~--~~~~~~~  284 (768)
                      +..|+.|++.......    .........+.++-+++.+....+.++...  .|.|..|.+..  |.....  ......+
T Consensus        15 s~gI~v~~ld~~~g~l----~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~   90 (346)
T COG2706          15 SQGIYVFNLDTKTGEL----SLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSP   90 (346)
T ss_pred             CCceEEEEEeCccccc----chhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCC
Confidence            5678888877443211    112233445567778887544333344333  57777777664  443321  1112222


Q ss_pred             eEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-ceEEEe--eecccCc----------EEEEEEecCCCcEEEEEeCCCe
Q 004214          285 VLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGV--GTGHMGA----------VGAVAFSKKLQNFLVSGSSDHT  351 (768)
Q Consensus       285 v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~--~~~~~~~----------v~~~~~~~~~~~~l~s~~~dg~  351 (768)
                      ...++  ...+++.++.+.-..|.|.++-++. |.+...  ...|.+.          +....+.|+++.++++.-.--.
T Consensus        91 p~yvs--vd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr  168 (346)
T COG2706          91 PCYVS--VDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR  168 (346)
T ss_pred             CeEEE--ECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce
Confidence            23343  6677777566666678999998865 433221  2234444          8889999997743333334456


Q ss_pred             EEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCC-ceEEEEec---------
Q 004214          352 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDL-VSVVTFRG---------  420 (768)
Q Consensus       352 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~---------  420 (768)
                      |.+|++..+......+..       .......+.|.|+|++++..+.+ .+++|.+|..... ..+..++.         
T Consensus       169 i~~y~~~dg~L~~~~~~~-------v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~  241 (346)
T COG2706         169 IFLYDLDDGKLTPADPAE-------VKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFT  241 (346)
T ss_pred             EEEEEcccCccccccccc-------cCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence            899999865433322211       13456678999999999887765 5889999998763 22222322         


Q ss_pred             cCCCeEEEEEccCCCEEEEeeC-CCcEEEEeCCCC-cee---EEeecCCCcEEEEEEEeCCCEEEEEeCCC-cEEEEECC
Q 004214          421 HKRGIWSVEFSPVDQVVITASG-DKTIKIWSISDG-SCL---KTFEGHTSSVLRASFLTRGAQIVSCGADG-LVKLWTVR  494 (768)
Q Consensus       421 ~~~~v~~v~~s~~~~~l~t~~~-d~~i~iwd~~~~-~~~---~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-~i~iwd~~  494 (768)
                      -.....+|.++|+|++|.++.. ...|-+|.+... ..+   .....+........|++.|++|+++..++ .|.+|.+.
T Consensus       242 g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         242 GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence            1345678999999999998754 347888877543 222   22233444577889999999999988865 78888654


Q ss_pred             --CCeEEEEec-cCCCcEEEEEE
Q 004214          495 --TGECIATYD-KHEDKIWALAV  514 (768)
Q Consensus       495 --~~~~~~~~~-~~~~~v~~l~~  514 (768)
                        +|++-.... .......|+.|
T Consensus       322 ~~TG~L~~~~~~~~~p~Pvcv~f  344 (346)
T COG2706         322 KETGRLTLLGRYAVVPEPVCVKF  344 (346)
T ss_pred             CCCceEEecccccCCCCcEEEEE
Confidence              555433322 22333445555

>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=99.11  E-value=1.6e-10  Score=96.37  Aligned_cols=93  Identities=19%  Similarity=0.229  Sum_probs=86.1

Q ss_pred             hHHHHHHHHhhcCHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHhccCCcchhhcc-cChHhHHHhhccchHhHHHHH
Q 004214          596 AELQIEKALHALGKEEIRQLLEYVREWNT--KPKLCHVAQFVLFQLFNIHPPTEIIEI-KGISDVLEGLIPYTQRHFSRI  672 (768)
Q Consensus       596 ~~~~~~~~~~~l~~~~~~~ll~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~  672 (768)
                      +...|+.++..||+.++.+||+|+..|+.  ++.+.+++..|+++|+..|+. ++... +++.+.|..|++.++++.+.+
T Consensus        14 ~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~-~l~~~~~~~~~~L~~L~~~l~~~~~~l   92 (110)
T PF04003_consen   14 PPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGS-YLSSSSPELRPVLRSLQKILRERLQNL   92 (110)
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            44589999999999999999999999886  689999999999999999966 77777 899999999999999999999


Q ss_pred             HHhHhhh-hhhheecccc
Q 004214          673 DRLVRST-FLLDYTLTGM  689 (768)
Q Consensus       673 ~~l~~~~-~~l~~~~~~~  689 (768)
                      .++++.. |.|+|+..||
T Consensus        93 ~~l~~~n~~~L~~l~~q~  110 (110)
T PF04003_consen   93 SKLLDLNLGRLDYLLSQI  110 (110)
T ss_pred             HHHHHHhHHHHHHHHHhC
Confidence            9999999 9999998875

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.06  E-value=2.2e-09  Score=110.21  Aligned_cols=284  Identities=17%  Similarity=0.272  Sum_probs=184.2

Q ss_pred             eEEEEecCCCCEEEEEeCCCcEEEEECCC-ceeeeeeeCCcc--ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC---
Q 004214          243 LDLKFLGEEEQYLAVATNIEQVQVYDLSS-MSCSYVLAGHSE--IVLCLDTCALSSGKILIVTGSKDNSVRLWDSES---  316 (768)
Q Consensus       243 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~--~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~---  316 (768)
                      ..+..+| .+.-++.++.- .+.+.|+.. +...+.+. |..  .|-...|...+.... -++......-.+|++..   
T Consensus        28 ~a~si~p-~grdi~lAsr~-gl~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~-wiVsts~qkaiiwnlA~ss~  103 (1081)
T KOG0309|consen   28 NAVSINP-SGRDIVLASRQ-GLYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPY-WIVSTSNQKAIIWNLAKSSS  103 (1081)
T ss_pred             cceeecc-ccchhhhhhhc-CeEEEeccCCCCCceeee-ccCcchhcceecccCCCCce-eEEecCcchhhhhhhhcCCc
Confidence            3334333 44455555553 345555543 23322222 211  122333333344444 34444455566888753   


Q ss_pred             ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214          317 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC  396 (768)
Q Consensus       317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  396 (768)
                      ...-..+.+|...|+.+.|+|..+.++++++.|..+..||++...         .+......-......++|+-....+.
T Consensus       104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~---------~p~ys~~~w~s~asqVkwnyk~p~vl  174 (1081)
T KOG0309|consen  104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH---------RPFYSTSSWRSAASQVKWNYKDPNVL  174 (1081)
T ss_pred             cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC---------cceeeeecccccCceeeecccCcchh
Confidence            344556779999999999999999999999999999999998642         23333333445567788887555555


Q ss_pred             EEeCCCcEEEEeCCCC-ceEEEEeccCCCeEEEEEccC-CCEEEEeeCCCcEEEEeCCCCcee-EEeecCCCcEEEEEEE
Q 004214          397 TGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCL-KTFEGHTSSVLRASFL  473 (768)
Q Consensus       397 ~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~~-~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s  473 (768)
                      +.+....|.+||++.+ .++..+++|...|..++|..- ...+.+.+.||+|+.||....... ........+|..-++.
T Consensus       175 asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~  254 (1081)
T KOG0309|consen  175 ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL  254 (1081)
T ss_pred             hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc
Confidence            5577788999999865 678889999999999998763 356788899999999998654322 2222355677777787


Q ss_pred             eCCCE--EEEEeCCCcEEE---------EECCC-CeEEEEeccCCCcEEEEEEcCCC----------CEEEEEeCCCcEE
Q 004214          474 TRGAQ--IVSCGADGLVKL---------WTVRT-GECIATYDKHEDKIWALAVGKKT----------EMFATGGSDALVN  531 (768)
Q Consensus       474 ~~~~~--l~s~~~dg~i~i---------wd~~~-~~~~~~~~~~~~~v~~l~~s~~~----------~~l~s~~~dg~v~  531 (768)
                      |-|.-  +.---.+..+.+         |++.+ .+++.+|.+|.+.|...-|-..+          -.|+|-+.|..++
T Consensus       255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr  334 (1081)
T KOG0309|consen  255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR  334 (1081)
T ss_pred             ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence            76542  211111224444         33333 46899999999998776664322          2799999999999


Q ss_pred             EEEcCCHH
Q 004214          532 LWHDSTAA  539 (768)
Q Consensus       532 vw~~~~~~  539 (768)
                      +|-+...-
T Consensus       335 lWpI~~~i  342 (1081)
T KOG0309|consen  335 LWPIDSQI  342 (1081)
T ss_pred             eeeccHHH
Confidence            99987653

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.06  E-value=7.2e-10  Score=109.76  Aligned_cols=247  Identities=15%  Similarity=0.240  Sum_probs=174.6

Q ss_pred             eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-------ceEEEeeecccCcEEEEEEecCCCcEEEEEeC
Q 004214          276 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS  348 (768)
Q Consensus       276 ~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  348 (768)
                      ..+.+|...|..+.  ...+.+. ++++++|.+|++|.++.       ..+..++..|..+|..+.|..+.+ ++  ++.
T Consensus       729 ~nf~GH~~~iRai~--AidNENS-FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i--~Sc  802 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIA--AIDNENS-FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SI--ASC  802 (1034)
T ss_pred             ecccCcHHHhHHHH--hcccccc-eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-ee--eec
Confidence            35678999998886  5555555 99999999999998753       446778889999999999998844 34  456


Q ss_pred             CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceEEEEec-----cC
Q 004214          349 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLPDLVSVVTFRG-----HK  422 (768)
Q Consensus       349 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-----~~  422 (768)
                      ||.|.+||.-.+.....     .......+....|.++. +-+..++..| +...+|+++|.+.++-...++.     ..
T Consensus       803 D~giHlWDPFigr~Laq-----~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn  876 (1034)
T KOG4190|consen  803 DGGIHLWDPFIGRLLAQ-----MEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN  876 (1034)
T ss_pred             cCcceeecccccchhHh-----hhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence            88999999653321110     00000111122233332 1134444444 7788999999999877666653     34


Q ss_pred             CCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEE-EECCCCeEEEE
Q 004214          423 RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL-WTVRTGECIAT  501 (768)
Q Consensus       423 ~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i-wd~~~~~~~~~  501 (768)
                      .-+.+++..|.|+.++++-.+|.|.+.|.++|+.+..+.........++ .|..+.|+....|.++.+ |..-+|....+
T Consensus       877 a~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q  955 (1034)
T KOG4190|consen  877 ALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQ  955 (1034)
T ss_pred             hheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeec
Confidence            5688999999999999999999999999999999998886666665554 356678888888999999 98888877776


Q ss_pred             eccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          502 YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       502 ~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      .+.+..+..-+  -.-|..|+++.....+.+|....
T Consensus       956 ~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a  989 (1034)
T KOG4190|consen  956 DKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSA  989 (1034)
T ss_pred             cCCCCcchhhh--hccCceeEEeccCcEEEEEecch
Confidence            66444433211  12466788888888889987553

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.04  E-value=2.1e-09  Score=110.42  Aligned_cols=233  Identities=18%  Similarity=0.272  Sum_probs=155.0

Q ss_pred             ceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee-eeeeeCCc
Q 004214          204 GLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-SYVLAGHS  282 (768)
Q Consensus       204 ~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~  282 (768)
                      .-++.+....-.+|.+.......    +.-.+.||...|+++.|.+.....+++++-+..+..||+.+... +.....-.
T Consensus        83 ~wiVsts~qkaiiwnlA~ss~~a----Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~  158 (1081)
T KOG0309|consen   83 YWIVSTSNQKAIIWNLAKSSSNA----IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR  158 (1081)
T ss_pred             eeEEecCcchhhhhhhhcCCccc----eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc
Confidence            33444455555566655443322    23346688999999999999999999999999999999987653 33444444


Q ss_pred             cceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc-eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCC
Q 004214          283 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS  361 (768)
Q Consensus       283 ~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  361 (768)
                      .....+.  +.-.+.. +.+.+..+.|++||.+.| .++..+++|...|..+.|+.--...+.+.+.||+|++||.....
T Consensus       159 s~asqVk--wnyk~p~-vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  159 SAASQVK--WNYKDPN-VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST  235 (1081)
T ss_pred             ccCceee--ecccCcc-hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence            4455565  4445555 555666778999999864 57788899999999999987655578999999999999987543


Q ss_pred             CCCccccccceeeEeeccCCCeEEEEEccCCC--EEEEEeCCCcEEE---------EeCCC-CceEEEEeccCCCeEEEE
Q 004214          362 DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS--LVCTGSQDRTACV---------WRLPD-LVSVVTFRGHKRGIWSVE  429 (768)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~i---------~d~~~-~~~~~~~~~~~~~v~~v~  429 (768)
                      .....         ......+|.--.+-|-|.  .+.---.+..+.+         |+..+ ..++..|.||...|...-
T Consensus       236 ~e~~~---------~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFl  306 (1081)
T KOG0309|consen  236 TESKR---------TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFL  306 (1081)
T ss_pred             cccce---------eccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHh
Confidence            22211         111223344444444222  1111111113333         33333 468899999999887666


Q ss_pred             EccCC----------CEEEEeeCCCcEEEEeCC
Q 004214          430 FSPVD----------QVVITASGDKTIKIWSIS  452 (768)
Q Consensus       430 ~s~~~----------~~l~t~~~d~~i~iwd~~  452 (768)
                      |-..+          -.|+|-+.|.++++|-+.
T Consensus       307 WR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  307 WRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             hhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence            64422          269999999999999875

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.03  E-value=2.7e-09  Score=102.44  Aligned_cols=159  Identities=20%  Similarity=0.260  Sum_probs=107.5

Q ss_pred             EecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe---CCCcEEEEeCCC
Q 004214          335 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS---QDRTACVWRLPD  411 (768)
Q Consensus       335 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~i~d~~~  411 (768)
                      .++. ..+++++..+....++++.....      ..+.. ....-....+++.+..+...+.++.   ....+.+|....
T Consensus        70 ~s~~-~~llAv~~~~K~~~~f~~~~~~~------~~kl~-~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~  141 (390)
T KOG3914|consen   70 TSDS-GRLVAVATSSKQRAVFDYRENPK------GAKLL-DVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS  141 (390)
T ss_pred             cCCC-ceEEEEEeCCCceEEEEEecCCC------cceee-eEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence            3444 33666666666666666654321      01111 1111222334455555444444444   344555565555


Q ss_pred             CceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee-cCCCcEEEEEEEeCCCEEEEEeCCCcEEE
Q 004214          412 LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-GHTSSVLRASFLTRGAQIVSCGADGLVKL  490 (768)
Q Consensus       412 ~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~i  490 (768)
                      +.. ..+-||-..++.++|+||+++++++..|..|+|-....-..+..|. ||...|..++.-++. .|++||.|++|++
T Consensus       142 ~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  142 GRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRL  219 (390)
T ss_pred             cCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEE
Confidence            333 3456799999999999999999999999999998876666666554 799999999987654 5899999999999


Q ss_pred             EECCCCeEEEEec
Q 004214          491 WTVRTGECIATYD  503 (768)
Q Consensus       491 wd~~~~~~~~~~~  503 (768)
                      ||+.+|+++.++.
T Consensus       220 Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  220 WDITSGKLLDTCD  232 (390)
T ss_pred             EecccCCcccccc
Confidence            9999999887764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.02  E-value=7.9e-07  Score=93.69  Aligned_cols=264  Identities=9%  Similarity=0.033  Sum_probs=161.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcE-
Q 004214          252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV-  330 (768)
Q Consensus       252 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-  330 (768)
                      +..+++++.++.++.+|..+++.......... +.+-   ..-.++. ++.++.+|.+..+|..+|+.+.......... 
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~ss---P~v~~~~-v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~  194 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE-ALSR---PVVSDGL-VLVHTSNGMLQALNESDGAVKWTVNLDVPSLT  194 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCc-eecC---CEEECCE-EEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence            34667777889999999999988776654332 2211   1112344 6677889999999999999887765321111 


Q ss_pred             ----EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccC-CCeEEEEEcc--CCCEEEEEeCCCc
Q 004214          331 ----GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG-KDINSLAVAP--NDSLVCTGSQDRT  403 (768)
Q Consensus       331 ----~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~--~~~~l~~~~~dg~  403 (768)
                          .+-... + . .++.++.+|.+..+|..++...-........    ..+. .....+..+|  .+..+++++.+|.
T Consensus       195 ~~~~~sP~v~-~-~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~----~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~  267 (394)
T PRK11138        195 LRGESAPATA-F-G-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPT----GATEIDRLVDVDTTPVVVGGVVYALAYNGN  267 (394)
T ss_pred             ccCCCCCEEE-C-C-EEEEEcCCCEEEEEEccCChhhheeccccCC----CccchhcccccCCCcEEECCEEEEEEcCCe
Confidence                011111 1 2 4667778898988888765422111100000    0000 0001111222  3456777788999


Q ss_pred             EEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC-cEEEEEEEeCCCEEEEE
Q 004214          404 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS-SVLRASFLTRGAQIVSC  482 (768)
Q Consensus       404 i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~  482 (768)
                      +..+|..+++.+.....  .....+..  .+..++.++.+|.+..+|..+|+.+.....-.. .......  .+.+|+.+
T Consensus       268 l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~  341 (394)
T PRK11138        268 LVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVG  341 (394)
T ss_pred             EEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEE
Confidence            99999999987765432  11112222  366777888899999999999987655432111 1111222  25678889


Q ss_pred             eCCCcEEEEECCCCeEEEEeccCCCcEEE-EEEcCCCCEEEEEeCCCcEEEEEc
Q 004214          483 GADGLVKLWTVRTGECIATYDKHEDKIWA-LAVGKKTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       483 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~s~~~~~l~s~~~dg~v~vw~~  535 (768)
                      +.+|.|.+.|..+|+.+...+.....+.+ ..+  .+..|+.++.||.|+.++.
T Consensus       342 ~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        342 DSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             eCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            99999999999999998887654443432 122  3557888999999888764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.94  E-value=1.7e-06  Score=91.23  Aligned_cols=309  Identities=11%  Similarity=0.021  Sum_probs=177.6

Q ss_pred             EEeecCCCcEEEEECCCCEEEEEEEcCC--C--------cEE-EEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEec
Q 004214            3 ALLEGADRKVLVWDVDGGFCTHYFKGHK--G--------VVS-SILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD   71 (768)
Q Consensus         3 latg~~dg~i~vwd~~~~~~~~~l~gh~--~--------~V~-~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~   71 (768)
                      +.+++.+|.|.-+|..+|+.+-...-..  .        .+. .++.  ++..  ++.++.+|.+..+|..+|+.+.+..
T Consensus        72 vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~--v~v~~~~g~l~ald~~tG~~~W~~~  147 (394)
T PRK11138         72 VYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGK--VYIGSEKGQVYALNAEDGEVAWQTK  147 (394)
T ss_pred             EEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCE--EEEEcCCCEEEEEECCCCCCccccc
Confidence            4566778999999999999876654321  0        111 1222  2234  6778889999999999999987776


Q ss_pred             CccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcce
Q 004214           72 KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEI  151 (768)
Q Consensus        72 ~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (768)
                      .......+...  .+..++.+..++.|..+|..+|+.+...+...+.....  .....              .   ....
T Consensus       148 ~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~--~~~sP--------------~---v~~~  206 (394)
T PRK11138        148 VAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR--GESAP--------------A---TAFG  206 (394)
T ss_pred             CCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc--CCCCC--------------E---EECC
Confidence            43321111122  24466777788999999999999888776432110000  00000              0   0012


Q ss_pred             EEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEE
Q 004214          152 HFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELIL  231 (768)
Q Consensus       152 ~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~  231 (768)
                      .++.++.+|.+..+|..+|......................+.. .....++.+++++.+|.+..++........     
T Consensus       207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~-sP~v~~~~vy~~~~~g~l~ald~~tG~~~W-----  280 (394)
T PRK11138        207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDT-TPVVVGGVVYALAYNGNLVALDLRSGQIVW-----  280 (394)
T ss_pred             EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCC-CcEEECCEEEEEEcCCeEEEEECCCCCEEE-----
Confidence            46667788999999998885543321110000000000000000 000125567777788888888876653211     


Q ss_pred             EeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccc-eEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214          232 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEI-VLCLDTCALSSGKILIVTGSKDNSVR  310 (768)
Q Consensus       232 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~~~l~~~~~dg~i~  310 (768)
                      ......    ...+.   ..+..+.+++.+|.+..+|..+++.+.....-... ..+.   . -.++. ++.++.+|.+.
T Consensus       281 ~~~~~~----~~~~~---~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp---~-v~~g~-l~v~~~~G~l~  348 (394)
T PRK11138        281 KREYGS----VNDFA---VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP---V-LYNGY-LVVGDSEGYLH  348 (394)
T ss_pred             eecCCC----ccCcE---EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCC---E-EECCE-EEEEeCCCEEE
Confidence            111111    11111   13457777888899999999998776543221111 1111   1 12444 78889999999


Q ss_pred             EEeCCCceEEEeeecccCcEEE-EEEecCCCcEEEEEeCCCeEEEEeC
Q 004214          311 LWDSESRCCVGVGTGHMGAVGA-VAFSKKLQNFLVSGSSDHTIKVWSF  357 (768)
Q Consensus       311 iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg~i~iwd~  357 (768)
                      ++|..+|+.+.........+.+ ..+. + . .|+.++.||.+..++.
T Consensus       349 ~ld~~tG~~~~~~~~~~~~~~s~P~~~-~-~-~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        349 WINREDGRFVAQQKVDSSGFLSEPVVA-D-D-KLLIQARDGTVYAITR  393 (394)
T ss_pred             EEECCCCCEEEEEEcCCCcceeCCEEE-C-C-EEEEEeCCceEEEEeC
Confidence            9999999988776644333332 2222 2 2 5888899999888764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=9.6e-06  Score=86.09  Aligned_cols=211  Identities=17%  Similarity=0.196  Sum_probs=138.7

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCc-EEEEEEecCCCcEEEEEeCCC-----eEEEEeCCCCCCCCc
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA-VGAVAFSKKLQNFLVSGSSDH-----TIKVWSFDGLSDDAE  365 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~  365 (768)
                      +.+.++. ++.|+.+|.|.+.+-. -+.+..++.+... |..+ +.-++.++|++.+.|+     .+++|++........
T Consensus        31 ~~s~~~~-vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   31 CSSSTGS-VVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EcCCCce-EEEeeccccEEEeccc-ceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            4466665 9999999999887643 3344666776666 4444 3444456888877765     489999986532221


Q ss_pred             ccccc--ceeeE--eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC----CCceEEEEeccCCCeEEEEEccCCCEE
Q 004214          366 QPMNL--KAKAV--VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP----DLVSVVTFRGHKRGIWSVEFSPVDQVV  437 (768)
Q Consensus       366 ~~~~~--~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~v~~v~~s~~~~~l  437 (768)
                       |.-.  .....  ......++.+++++.+-+.+|+|-.+|.|..+.-+    .+....-...-..+|+.+++..++..+
T Consensus       108 -P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~  186 (933)
T KOG2114|consen  108 -PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV  186 (933)
T ss_pred             -cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence             1111  01111  11235688999999999999999999999998532    112122222345799999999998873


Q ss_pred             EEeeCCCcEEEEeCCCCce-eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCC
Q 004214          438 ITASGDKTIKIWSISDGSC-LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHED  507 (768)
Q Consensus       438 ~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~  507 (768)
                      +-+..-..|.+|.+....+ ...+..|..++.|..|++....+++++. ..+.+|+.+.-.+-.++. +|..
T Consensus       187 lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk  257 (933)
T KOG2114|consen  187 LFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKK  257 (933)
T ss_pred             EEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeE
Confidence            3333447899999974442 4557788889999999887665666664 459999987655555555 4443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.93  E-value=6.1e-07  Score=93.89  Aligned_cols=212  Identities=10%  Similarity=-0.050  Sum_probs=128.7

Q ss_pred             CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeC---CCeEEEEeCCCCCCCCccccccceeeEeeccCCCe
Q 004214          307 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS---DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI  383 (768)
Q Consensus       307 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i  383 (768)
                      ..|.+-|...........+  +......|+|+|+..++..+.   +..|.++|+.++.          .. .+.......
T Consensus       169 ~~l~~~d~dg~~~~~~~~~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~----------~~-~lt~~~g~~  235 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVKG--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK----------KE-KIASSQGML  235 (419)
T ss_pred             ceEEEECCCCCceeEEccC--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc----------EE-EEecCCCcE
Confidence            3555555554433322232  377889999998853443332   3568888886542          11 112234445


Q ss_pred             EEEEEccCCCEEEEEe-CC--CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC-CC--cEEEEeCCCCcee
Q 004214          384 NSLAVAPNDSLVCTGS-QD--RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DK--TIKIWSISDGSCL  457 (768)
Q Consensus       384 ~~~~~s~~~~~l~~~~-~d--g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d~--~i~iwd~~~~~~~  457 (768)
                      ....|+|||+.++... .+  ..|.++|+.++... .+..+........|+|||+.|+..+. .+  .|.++|+.+++..
T Consensus       236 ~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~  314 (419)
T PRK04043        236 VVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE  314 (419)
T ss_pred             EeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence            6678999998776543 33  46888898777643 34434333445689999987776653 22  6888899877764


Q ss_pred             EEeecCCCcEEEEEEEeCCCEEEEEeCC---------CcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-
Q 004214          458 KTFEGHTSSVLRASFLTRGAQIVSCGAD---------GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD-  527 (768)
Q Consensus       458 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d-  527 (768)
                      +.... ...  ...|+|+|++|+..+..         ..|.+.|+.+++.. .+... .......|+|||+.++-...+ 
T Consensus       315 rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~  389 (419)
T PRK04043        315 QVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLG  389 (419)
T ss_pred             eCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccC
Confidence            43321 111  24899999988766653         26788898888653 33322 223357899999988765543 


Q ss_pred             Cc--EEEEEcCC
Q 004214          528 AL--VNLWHDST  537 (768)
Q Consensus       528 g~--v~vw~~~~  537 (768)
                      +.  +.+.++..
T Consensus       390 ~~~~L~~~~l~g  401 (419)
T PRK04043        390 NQSALGIIRLNY  401 (419)
T ss_pred             CcEEEEEEecCC
Confidence            33  44555443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.92  E-value=1.2e-06  Score=91.58  Aligned_cols=213  Identities=8%  Similarity=0.026  Sum_probs=127.6

Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEE-EeC--CCeEEEEeCCCceEEEeeecccCcEEEEEEecC
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVT-GSK--DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK  338 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~-~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  338 (768)
                      ..|.+-|...........+ . ......  ++++++.+++. ...  +..|.++|+.+++...... ..+......|+|+
T Consensus       169 ~~l~~~d~dg~~~~~~~~~-~-~~~~p~--wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPD  243 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVKG-G-LNIFPK--WANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKD  243 (419)
T ss_pred             ceEEEECCCCCceeEEccC-C-CeEeEE--ECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCC
Confidence            3555555544433323332 2 444444  77887753443 332  3579999998887655443 4555667889999


Q ss_pred             CCcEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC-C--cEEEEeCCCCc
Q 004214          339 LQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-R--TACVWRLPDLV  413 (768)
Q Consensus       339 ~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~  413 (768)
                      |+.++++.+.++  .|.++++..+.          . ..+..+........|+|||+.|+..+.. +  .|+++|+.+++
T Consensus       244 G~~la~~~~~~g~~~Iy~~dl~~g~----------~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~  312 (419)
T PRK04043        244 GSKLLLTMAPKGQPDIYLYDTNTKT----------L-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS  312 (419)
T ss_pred             CCEEEEEEccCCCcEEEEEECCCCc----------E-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            987777766554  46666765431          1 1111122223345799999887776643 3  58888888776


Q ss_pred             eEEEEeccCCCeEEEEEccCCCEEEEeeCC---------CcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeC
Q 004214          414 SVVTFRGHKRGIWSVEFSPVDQVVITASGD---------KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA  484 (768)
Q Consensus       414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d---------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  484 (768)
                      ....... ..  ....|+|+|+.|+..+..         ..|.+.|+.++.. +.+... .......|+|||+.++....
T Consensus       313 ~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        313 VEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             eEeCccC-CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEc
Confidence            6433221 11  124899999988776643         3688889887764 334322 23335889999998876654


Q ss_pred             CC---cEEEEECCC
Q 004214          485 DG---LVKLWTVRT  495 (768)
Q Consensus       485 dg---~i~iwd~~~  495 (768)
                      ++   .+.+.++..
T Consensus       388 ~~~~~~L~~~~l~g  401 (419)
T PRK04043        388 LGNQSALGIIRLNY  401 (419)
T ss_pred             cCCcEEEEEEecCC
Confidence            33   355666643

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.91  E-value=6.4e-08  Score=89.50  Aligned_cols=248  Identities=22%  Similarity=0.317  Sum_probs=163.5

Q ss_pred             ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce-----EEEeeecccC------------cEEEEEEec-CCCcEE
Q 004214          282 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-----CVGVGTGHMG------------AVGAVAFSK-KLQNFL  343 (768)
Q Consensus       282 ~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~------------~v~~~~~~~-~~~~~l  343 (768)
                      ...|+++.  +...|. ++++|...|.|.+|.-....     ....+++|..            .|..+.|.. .+...+
T Consensus        26 ad~ItaVe--fd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          26 ADKITAVE--FDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             cceeeEEE--eccccc-eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence            34566665  445555 49999999999999754322     2233555542            466677754 445678


Q ss_pred             EEEeCCCeEEEEeCCCCCCC----------Ccccc----------------------ccceee-EeeccCCCeEEEEEcc
Q 004214          344 VSGSSDHTIKVWSFDGLSDD----------AEQPM----------------------NLKAKA-VVAAHGKDINSLAVAP  390 (768)
Q Consensus       344 ~s~~~dg~i~iwd~~~~~~~----------~~~~~----------------------~~~~~~-~~~~~~~~i~~~~~s~  390 (768)
                      +..+.|.+|++|.+......          ...+.                      ...+.+ ....|.-.|+++.++.
T Consensus       103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns  182 (460)
T COG5170         103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS  182 (460)
T ss_pred             EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence            88889999999987643100          00000                      011111 2256788899999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCc---eEEEEeccC-----CCeEEEEEccCC-CEEEEeeCCCcEEEEeCCCCcee----
Q 004214          391 NDSLVCTGSQDRTACVWRLPDLV---SVVTFRGHK-----RGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCL----  457 (768)
Q Consensus       391 ~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~-----~~v~~v~~s~~~-~~l~t~~~d~~i~iwd~~~~~~~----  457 (768)
                      |...++++ .|-.|.+|++.-..   .+..++.|.     .-|++..|+|.. +.+.-.+..|.|++-|++...+.    
T Consensus       183 D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~  261 (460)
T COG5170         183 DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK  261 (460)
T ss_pred             chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence            98888775 46789999986432   233344443     357889999963 55556667799999999843211    


Q ss_pred             ------------EEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC-eEEEEeccCC------------CcE---
Q 004214          458 ------------KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG-ECIATYDKHE------------DKI---  509 (768)
Q Consensus       458 ------------~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~------------~~v---  509 (768)
                                  .-|.+-...|..+.|+++|+++++-+. -+|+|||+... .++.++.-|.            +.|   
T Consensus       262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk  340 (460)
T COG5170         262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK  340 (460)
T ss_pred             hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence                        112233467889999999999988654 57999999754 5777775443            233   


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214          510 WALAVGKKTEMFATGGSDALVNLWH  534 (768)
Q Consensus       510 ~~l~~s~~~~~l~s~~~dg~v~vw~  534 (768)
                      ..+.||.|...+.+|+.....-++-
T Consensus       341 FeisfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         341 FEISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             EEEEecCCcccccccccccceeeec
Confidence            3478899999999999887777765

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=2e-07  Score=89.63  Aligned_cols=261  Identities=11%  Similarity=0.104  Sum_probs=160.7

Q ss_pred             EEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEE
Q 004214          264 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL  343 (768)
Q Consensus       264 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  343 (768)
                      +++.+..+.+....+.++...|..++  +++...-++..++.+..|.|.|+++...+..+..+ ..+++++|.-+..+++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~Irdla--fSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~I  251 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLA--FSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVI  251 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhc--cCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCccee
Confidence            77777777777778899999999998  66766667899999999999999999999988888 8899999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEE------EEccCCCEEEEEeCCCcEEEEeCC--CCceE
Q 004214          344 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL------AVAPNDSLVCTGSQDRTACVWRLP--DLVSV  415 (768)
Q Consensus       344 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~s~~~~~l~~~~~dg~i~i~d~~--~~~~~  415 (768)
                      .+|-.+|.|.+||++...........       .....+|..+      ...+.|.+++....+  +..|+..  .+...
T Consensus       252 YaGl~nG~VlvyD~R~~~~~~~e~~a-------~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p  322 (463)
T KOG1645|consen  252 YAGLQNGMVLVYDMRQPEGPLMELVA-------NVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLP  322 (463)
T ss_pred             EEeccCceEEEEEccCCCchHhhhhh-------hhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCC
Confidence            99999999999999865321110000       0011222222      333445566555543  4556543  12222


Q ss_pred             EEEe-ccCCCeEEEEEccCCCEEEEeeCC-C------cEEE-EeCCCCceeEEee-cCCCc----E--EE-EEEEeCCCE
Q 004214          416 VTFR-GHKRGIWSVEFSPVDQVVITASGD-K------TIKI-WSISDGSCLKTFE-GHTSS----V--LR-ASFLTRGAQ  478 (768)
Q Consensus       416 ~~~~-~~~~~v~~v~~s~~~~~l~t~~~d-~------~i~i-wd~~~~~~~~~~~-~~~~~----v--~~-~~~s~~~~~  478 (768)
                      .++. +..+...++.+.+..+.++..... .      .|-. -|-.+|.++...+ ++.+.    +  +. +.-.++.++
T Consensus       323 ~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~  402 (463)
T KOG1645|consen  323 CVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNY  402 (463)
T ss_pred             cccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccE
Confidence            2222 124556666666654444433221 1      1111 1222333332211 12110    0  01 112345566


Q ss_pred             EEE-EeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcCC
Q 004214          479 IVS-CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK-KTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       479 l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      ++. ++..+.+.+||+.+++.++++. ...+|..++... ++.-++..-.|..++|++-++
T Consensus       403 iv~~gd~tn~lil~D~~s~evvQ~l~-~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~es  462 (463)
T KOG1645|consen  403 IVVVGDSTNELILQDPHSFEVVQTLA-LSEPVLDICPNDTNGSSYLALLTDDRVHIYKNES  462 (463)
T ss_pred             EEEecCCcceeEEeccchhheeeecc-cCcceeecceeecCCcchhhheecceEEEEecCC
Confidence            654 4445689999999999999997 557888776543 344344444566788887553

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.89  E-value=1.5e-08  Score=97.51  Aligned_cols=156  Identities=15%  Similarity=0.240  Sum_probs=113.2

Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEeCCCCce----EEEEeccCCCeEEEEEccCCCEEEE---eeCCCcEEEEeCCCCc
Q 004214          383 INSLAVAPNDSLVCTGSQDRTACVWRLPDLVS----VVTFRGHKRGIWSVEFSPVDQVVIT---ASGDKTIKIWSISDGS  455 (768)
Q Consensus       383 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~v~~s~~~~~l~t---~~~d~~i~iwd~~~~~  455 (768)
                      ...+..+|.++++|++..+....++++.....    ..... -...-+++.|..+......   ++....+.+|....+.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            34556788999999999998888887754432    22222 2223344444444444333   4455566667666544


Q ss_pred             eeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214          456 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWH  534 (768)
Q Consensus       456 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~  534 (768)
                      + ..+-||-..++.++|+||+++++++..|+.|+|-.....-.+..+. +|..-|..++.-++ ..|++||.|++|++|+
T Consensus       144 ~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  144 C-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD  221 (390)
T ss_pred             c-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence            4 4445799999999999999999999999999998877766666654 69999999998754 4599999999999999


Q ss_pred             cCCHHHH
Q 004214          535 DSTAAER  541 (768)
Q Consensus       535 ~~~~~~~  541 (768)
                      +.+++..
T Consensus       222 ~~sgk~L  228 (390)
T KOG3914|consen  222 ITSGKLL  228 (390)
T ss_pred             cccCCcc
Confidence            9987654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.88  E-value=7.6e-06  Score=80.07  Aligned_cols=216  Identities=14%  Similarity=0.043  Sum_probs=141.6

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEe-cCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccc
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS-KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL  370 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  370 (768)
                      +.+.++.++++....+.|+.|+..++....... ..  ...+++. ++ . .++.+...+ +.++|...+        ..
T Consensus         7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~~--~~G~~~~~~~-g-~l~v~~~~~-~~~~d~~~g--------~~   72 (246)
T PF08450_consen    7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-PG--PNGMAFDRPD-G-RLYVADSGG-IAVVDPDTG--------KV   72 (246)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTTEEEEEES-SS--EEEEEEECTT-S-EEEEEETTC-EEEEETTTT--------EE
T ss_pred             EECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-CC--CceEEEEccC-C-EEEEEEcCc-eEEEecCCC--------cE
Confidence            555566667777788999999999886654222 22  6677777 55 4 355555544 455587643        11


Q ss_pred             ceeeEee--c-cCCCeEEEEEccCCCEEEEEeCC--------CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEE-
Q 004214          371 KAKAVVA--A-HGKDINSLAVAPNDSLVCTGSQD--------RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI-  438 (768)
Q Consensus       371 ~~~~~~~--~-~~~~i~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-  438 (768)
                      .......  . .....+.++++|+|++.++....        |.|..++.. ++...... .-...+.++|+|+++.|+ 
T Consensus        73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv  150 (246)
T PF08450_consen   73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYV  150 (246)
T ss_dssp             EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEE
T ss_pred             EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheee
Confidence            1111111  1 34567899999999987776644        457777776 44433333 355678999999998765 


Q ss_pred             EeeCCCcEEEEeCCCCce----eE---EeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEE
Q 004214          439 TASGDKTIKIWSISDGSC----LK---TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA  511 (768)
Q Consensus       439 t~~~d~~i~iwd~~~~~~----~~---~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  511 (768)
                      +-+..+.|..|++.....    ..   .+....+..-.+++..+|+..++....+.|.+++.. |+.+..+......+++
T Consensus       151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~  229 (246)
T PF08450_consen  151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTN  229 (246)
T ss_dssp             EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEE
T ss_pred             cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEE
Confidence            556778899999853221    12   222222347789999999988887788999999987 9999988877678999


Q ss_pred             EEEc-CCCCEEEEE
Q 004214          512 LAVG-KKTEMFATG  524 (768)
Q Consensus       512 l~~s-~~~~~l~s~  524 (768)
                      ++|. ++...|...
T Consensus       230 ~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  230 CAFGGPDGKTLYVT  243 (246)
T ss_dssp             EEEESTTSSEEEEE
T ss_pred             EEEECCCCCEEEEE
Confidence            9994 665555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.86  E-value=6.4e-09  Score=97.55  Aligned_cols=160  Identities=18%  Similarity=0.254  Sum_probs=123.5

Q ss_pred             EEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-----ceEEE
Q 004214          343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-----VSVVT  417 (768)
Q Consensus       343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~  417 (768)
                      -++.+.+-.|-+-++.++-           ... ....++|.++.|...++++..|+.+|.|..+|++..     .+...
T Consensus       227 hfs~G~sqqv~L~nvetg~-----------~qs-f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  227 HFSVGLSQQVLLTNVETGH-----------QQS-FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             eecccccceeEEEEeeccc-----------ccc-cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            3556666677777876542           111 124578889999999999999999999999999864     34444


Q ss_pred             EeccCCCeEEEEEcc-CCCEEEEeeCCCcEEEEeCCCCce---eEEeecCCCcEEEEEE--EeCCCEEEEEeCCCcEEEE
Q 004214          418 FRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDGSC---LKTFEGHTSSVLRASF--LTRGAQIVSCGADGLVKLW  491 (768)
Q Consensus       418 ~~~~~~~v~~v~~s~-~~~~l~t~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~i~iw  491 (768)
                      +. |...|+++..-. ++++|.+.+.+|+|++||++.-++   +.+++||...-..+-+  .+....+++++.|...+||
T Consensus       295 ly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW  373 (425)
T KOG2695|consen  295 LY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW  373 (425)
T ss_pred             EE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence            54 899999988776 789999999999999999988777   9999999775544444  4556688999999999999


Q ss_pred             ECCCCeEEEEeccC----CCcEEEEEEc
Q 004214          492 TVRTGECIATYDKH----EDKIWALAVG  515 (768)
Q Consensus       492 d~~~~~~~~~~~~~----~~~v~~l~~s  515 (768)
                      .+++|..+.++.-.    +..+++++|.
T Consensus       374 sl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  374 SLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             ecccCceeeccCCCCccccccccceehh
Confidence            99999999888632    2345666664

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.86  E-value=1.1e-07  Score=87.92  Aligned_cols=243  Identities=17%  Similarity=0.277  Sum_probs=159.9

Q ss_pred             CceeEEEEecCCCCEEEEEeCCCcEEEEECCCce-e----eeeeeCCc------------cceEEEeeeeecCCCEEEEE
Q 004214          240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS-C----SYVLAGHS------------EIVLCLDTCALSSGKILIVT  302 (768)
Q Consensus       240 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~----~~~~~~~~------------~~v~~l~~~~~~~~~~~l~~  302 (768)
                      +.|+.+.|. ..+.++++|...|.|.+|.-.... |    ...+++|.            ..|..+.|+- +.+...++.
T Consensus        27 d~ItaVefd-~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~-~t~r~hFLl  104 (460)
T COG5170          27 DKITAVEFD-ETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFD-DTGRNHFLL  104 (460)
T ss_pred             ceeeEEEec-cccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeec-CCCcceEEE
Confidence            356666664 467899999999999999866433 1    12245543            2355666433 333344777


Q ss_pred             EeCCCeEEEEeCCCce------------------------------------------EEEee-ecccCcEEEEEEecCC
Q 004214          303 GSKDNSVRLWDSESRC------------------------------------------CVGVG-TGHMGAVGAVAFSKKL  339 (768)
Q Consensus       303 ~~~dg~i~iwd~~~~~------------------------------------------~~~~~-~~~~~~v~~~~~~~~~  339 (768)
                      .+.|.+|++|.+....                                          +.+.+ ..|.-.+.++.++.+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            7889999999754220                                          00111 3577778899998885


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeecc-----CCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc
Q 004214          340 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH-----GKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLV  413 (768)
Q Consensus       340 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~  413 (768)
                      . .++ .+.|-.|.+|++.-.....       ...-..+|     ..-|++..|+| ....+...+..|.|++-|++...
T Consensus       185 e-t~l-SaDdLrINLWnl~i~D~sF-------nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a  255 (460)
T COG5170         185 E-TLL-SADDLRINLWNLEIIDGSF-------NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA  255 (460)
T ss_pred             h-eee-eccceeeeeccccccCCce-------EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence            5 344 4567789999987442211       01111112     24578889999 45667777888999999997432


Q ss_pred             eE----------------EEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC-ceeEEeecCC------------
Q 004214          414 SV----------------VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHT------------  464 (768)
Q Consensus       414 ~~----------------~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~------------  464 (768)
                      ..                .-+.+-...|..+.|+++|+++++-+. -+|+|||++.. .|+.++.-|.            
T Consensus       256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEn  334 (460)
T COG5170         256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEN  334 (460)
T ss_pred             hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhc
Confidence            11                111123457889999999999998876 78999998754 5777775443            


Q ss_pred             CcE---EEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214          465 SSV---LRASFLTRGAQIVSCGADGLVKLWTVR  494 (768)
Q Consensus       465 ~~v---~~~~~s~~~~~l~s~~~dg~i~iwd~~  494 (768)
                      ..|   ..+.||.|.+.+++|+.....-+|-+.
T Consensus       335 DaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         335 DAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             cceeeeEEEEecCCcccccccccccceeeeccc
Confidence            222   457888899999999988888887643

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.86  E-value=1.3e-05  Score=78.49  Aligned_cols=219  Identities=11%  Similarity=0.033  Sum_probs=142.2

Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee
Q 004214          244 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG  323 (768)
Q Consensus       244 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  323 (768)
                      +..|.+.++.++++-...+.|..|+..++.... +....  ...+.  +..+++. ++.+... .+.++|..+++.....
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~--~~~~~g~-l~v~~~~-~~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMA--FDRPDGR-LYVADSG-GIAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEE--EECTTSE-EEEEETT-CEEEEETTTTEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEE--EEccCCE-EEEEEcC-ceEEEecCCCcEEEEe
Confidence            345665577777777788999999998887653 22222  33443  4434565 5555554 4556699988665544


Q ss_pred             ec-----ccCcEEEEEEecCCCcEEEEEeCC--------CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214          324 TG-----HMGAVGAVAFSKKLQNFLVSGSSD--------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP  390 (768)
Q Consensus       324 ~~-----~~~~v~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  390 (768)
                      ..     .......+++.|+|. +.++....        |.|..++.. +           ........-...+.++|+|
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~-----------~~~~~~~~~~~pNGi~~s~  143 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-G-----------KVTVVADGLGFPNGIAFSP  143 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S-----------EEEEEEEEESSEEEEEEET
T ss_pred             eccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-C-----------eEEEEecCcccccceEECC
Confidence            43     345678899999977 55555443        445556554 1           1222223345678999999


Q ss_pred             CCCEEE-EEeCCCcEEEEeCCCCce----EEEE---eccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec
Q 004214          391 NDSLVC-TGSQDRTACVWRLPDLVS----VVTF---RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG  462 (768)
Q Consensus       391 ~~~~l~-~~~~dg~i~i~d~~~~~~----~~~~---~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~  462 (768)
                      +++.|+ +-+..+.|..|++.....    ...+   ....+..-.+++.++|++.++....+.|.++|.. |+.+..+..
T Consensus       144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~  222 (246)
T PF08450_consen  144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL  222 (246)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-
T ss_pred             cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC
Confidence            998765 556678899998853221    1222   2222247789999999998888888999999986 999988887


Q ss_pred             CCCcEEEEEEE-eCCCEEEEEe
Q 004214          463 HTSSVLRASFL-TRGAQIVSCG  483 (768)
Q Consensus       463 ~~~~v~~~~~s-~~~~~l~s~~  483 (768)
                      ....+++++|. ++.+.|+..+
T Consensus       223 p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  223 PVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             SSSSEEEEEEESTTSSEEEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEe
Confidence            76789999995 5666665443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.86  E-value=3.9e-06  Score=81.94  Aligned_cols=219  Identities=12%  Similarity=0.028  Sum_probs=140.5

Q ss_pred             CCcEEEEECCCceeeeeeeCC--ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecC
Q 004214          261 IEQVQVYDLSSMSCSYVLAGH--SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK  338 (768)
Q Consensus       261 ~~~i~i~d~~~~~~~~~~~~~--~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  338 (768)
                      +|.|..||..+++.+......  .....+.   ....++. +++++.++.+..||..+|+.+............. ...+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~   76 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT---AVPDGGR-VYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDG   76 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET---EEEETTE-EEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEET
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce---EEEeCCE-EEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecc
Confidence            588999999999988877541  1222211   2234555 7777899999999999999887766422111112 2222


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE-eeccC---CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 004214          339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV-VAAHG---KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS  414 (768)
Q Consensus       339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~---~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  414 (768)
                       . .++.++.++.+..+|...+..          ... .....   ...........+..++++..++.|..+|+.+|+.
T Consensus        77 -~-~v~v~~~~~~l~~~d~~tG~~----------~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~  144 (238)
T PF13360_consen   77 -G-RVYVGTSDGSLYALDAKTGKV----------LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL  144 (238)
T ss_dssp             -T-EEEEEETTSEEEEEETTTSCE----------EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE
T ss_pred             -c-ccccccceeeeEecccCCcce----------eeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE
Confidence             2 467777888999999776532          222 11110   1112223333478888888899999999999999


Q ss_pred             EEEEeccCCC----------eEEEEEccCCCEEEEeeCCCc-EEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEe
Q 004214          415 VVTFRGHKRG----------IWSVEFSPVDQVVITASGDKT-IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG  483 (768)
Q Consensus       415 ~~~~~~~~~~----------v~~v~~s~~~~~l~t~~~d~~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  483 (768)
                      +.........          +..-....++ .++.++.++. +.+ |+.+++.+....  ...+.. ....++..|+.++
T Consensus       145 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~  219 (238)
T PF13360_consen  145 LWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTS  219 (238)
T ss_dssp             EEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEE
T ss_pred             EEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEe
Confidence            8888764422          1122222344 6666777775 555 999998664333  222222 2457788888888


Q ss_pred             CCCcEEEEECCCCeEEEE
Q 004214          484 ADGLVKLWTVRTGECIAT  501 (768)
Q Consensus       484 ~dg~i~iwd~~~~~~~~~  501 (768)
                      .++.|..||+++|+.+.+
T Consensus       220 ~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  220 SDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             TTTEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEECCCCCEEeE
Confidence            999999999999998754

...

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=8.8e-08  Score=93.25  Aligned_cols=281  Identities=17%  Similarity=0.119  Sum_probs=188.7

Q ss_pred             cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc---eeeeeeeCCccceEEEeeeeecCCCEEEEEEeC-CCeEEEEe
Q 004214          238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM---SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK-DNSVRLWD  313 (768)
Q Consensus       238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~-dg~i~iwd  313 (768)
                      |.+.|+.+..  .-.+++..++-||.++.|--..-   +.+..+..|...+.+++   .+-++.++.+++. |..++++|
T Consensus         8 hrd~i~hv~~--tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~---~S~dg~L~~Sv~d~Dhs~KvfD   82 (558)
T KOG0882|consen    8 HRDVITHVFP--TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLA---VSYDGWLFRSVEDPDHSVKVFD   82 (558)
T ss_pred             ccceeeeEee--ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhh---ccccceeEeeccCcccceeEEE
Confidence            3444444443  35568999999999999986542   33444567888888874   4445566888777 99999999


Q ss_pred             CCCceEEEeeec--ccCcEEEEEEecCCC--cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214          314 SESRCCVGVGTG--HMGAVGAVAFSKKLQ--NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA  389 (768)
Q Consensus       314 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  389 (768)
                      +.+-..+..++.  -.+.+..+ .+|...  .+.++.-.+|.+.++|-....        ........-|..+|..+.+.
T Consensus        83 vEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~--------~q~~~fkklH~sPV~~i~y~  153 (558)
T KOG0882|consen   83 VENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDF--------CQDGYFKKLHFSPVKKIRYN  153 (558)
T ss_pred             eeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCc--------CccceecccccCceEEEEee
Confidence            887554432221  11222111 122111  233344567889999866432        12334445688999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEeCCC------CceEE---------EEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214          390 PNDSLVCTGSQDRTACVWRLPD------LVSVV---------TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG  454 (768)
Q Consensus       390 ~~~~~l~~~~~dg~i~i~d~~~------~~~~~---------~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~  454 (768)
                      |.+..+++....|.|.-|..+.      .+...         .+.......+++.|+|++..+.+-+.|..|++++..+|
T Consensus       154 qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG  233 (558)
T KOG0882|consen  154 QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG  233 (558)
T ss_pred             ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc
Confidence            9999999999999999998862      11111         11223456789999999999999999999999999998


Q ss_pred             ceeEEee--------------------------------cCC-CcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 004214          455 SCLKTFE--------------------------------GHT-SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIAT  501 (768)
Q Consensus       455 ~~~~~~~--------------------------------~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~  501 (768)
                      +.++.+.                                .|. ..-+.+.|...|++|+-|+-=| |++.++.++++++.
T Consensus       234 klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri  312 (558)
T KOG0882|consen  234 KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRI  312 (558)
T ss_pred             hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence            8766543                                121 2335678888999999988776 89999999998877


Q ss_pred             eccCCC------------------cE-------EEEEEcCCCCEEEEEeCCCcEEEE
Q 004214          502 YDKHED------------------KI-------WALAVGKKTEMFATGGSDALVNLW  533 (768)
Q Consensus       502 ~~~~~~------------------~v-------~~l~~s~~~~~l~s~~~dg~v~vw  533 (768)
                      +-....                  .+       ..+.+.+|...++++-.-..++++
T Consensus       313 ~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  313 LGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             eccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence            632110                  00       112355666677777777777777

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.81  E-value=3.1e-06  Score=82.69  Aligned_cols=216  Identities=12%  Similarity=0.028  Sum_probs=138.3

Q ss_pred             CCeEEEEeCCCceEEEeeecc--cCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCe
Q 004214          306 DNSVRLWDSESRCCVGVGTGH--MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI  383 (768)
Q Consensus       306 dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i  383 (768)
                      +|.|..||..+++.+.....-  .....+..+. ++. .+++++.++.+..||...+.          ....... ...+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~~~l~~~d~~tG~----------~~W~~~~-~~~~   68 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGG-RVYVASGDGNLYALDAKTGK----------VLWRFDL-PGPI   68 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETT-EEEEEETTSEEEEEETTTSE----------EEEEEEC-SSCG
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCC-EEEEEcCCCEEEEEECCCCC----------EEEEeec-cccc
Confidence            688999999999988877531  1222222222 223 57777899999999987552          2222221 1111


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEE-eccCC---CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEE
Q 004214          384 NSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF-RGHKR---GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT  459 (768)
Q Consensus       384 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~---~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~  459 (768)
                      .... ...+..+++++.++.+..+|..+++.+... .....   ..........+..++++..++.|..+|+++|+.+..
T Consensus        69 ~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~  147 (238)
T PF13360_consen   69 SGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK  147 (238)
T ss_dssp             GSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred             ccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence            1111 224556677778889999999999998884 43211   112223333478888888899999999999999888


Q ss_pred             eecCCCc----------EEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCc
Q 004214          460 FEGHTSS----------VLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL  529 (768)
Q Consensus       460 ~~~~~~~----------v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~  529 (768)
                      .......          +..-....++ .++.++.+|.+.-+|+.+++.+....  ...+..+ ..+++..|+.++.++.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~  223 (238)
T PF13360_consen  148 YPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGR  223 (238)
T ss_dssp             EESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTE
T ss_pred             eecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCE
Confidence            8764422          1122222344 77777778854444999999775433  2333332 4567788888889999


Q ss_pred             EEEEEcCCHH
Q 004214          530 VNLWHDSTAA  539 (768)
Q Consensus       530 v~vw~~~~~~  539 (768)
                      |..||+.+++
T Consensus       224 l~~~d~~tG~  233 (238)
T PF13360_consen  224 LYALDLKTGK  233 (238)
T ss_dssp             EEEEETTTTE
T ss_pred             EEEEECCCCC
Confidence            9999999875

...

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=9.6e-08  Score=92.98  Aligned_cols=214  Identities=17%  Similarity=0.096  Sum_probs=151.8

Q ss_pred             cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-CCc
Q 004214          325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRT  403 (768)
Q Consensus       325 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~  403 (768)
                      .|...|+.+..+..  .++.+++.||.+++|.-....       -......+..|...|.+++.+-++.++++.+. |..
T Consensus         7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~is-------GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs   77 (558)
T KOG0882|consen    7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRIS-------GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHS   77 (558)
T ss_pred             cccceeeeEeeehh--heEEeeecchhhhhcCCCCcc-------ceeehhhhHHHHHHHHhhhccccceeEeeccCcccc
Confidence            47777877776653  489999999999999754311       12233345668888999999999999999777 999


Q ss_pred             EEEEeCCCCceEEEEeccCCCeE-EEEEccCC---CEEEEeeCCCcEEEEeCCCCc--eeEEeecCCCcEEEEEEEeCCC
Q 004214          404 ACVWRLPDLVSVVTFRGHKRGIW-SVEFSPVD---QVVITASGDKTIKIWSISDGS--CLKTFEGHTSSVLRASFLTRGA  477 (768)
Q Consensus       404 i~i~d~~~~~~~~~~~~~~~~v~-~v~~s~~~---~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~  477 (768)
                      ++++|+.+...+.-++-..-|=. +...+|..   .+-++...++.+.|+|-....  ....-.-|..+|..+.+++-+.
T Consensus        78 ~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D  157 (558)
T KOG0882|consen   78 VKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD  157 (558)
T ss_pred             eeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc
Confidence            99999987655433332111111 12223321   233334467899999965443  3334446999999999999999


Q ss_pred             EEEEEeCCCcEEEEECCC------CeEEEEe---------ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHHH
Q 004214          478 QIVSCGADGLVKLWTVRT------GECIATY---------DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAERE  542 (768)
Q Consensus       478 ~l~s~~~dg~i~iwd~~~------~~~~~~~---------~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~  542 (768)
                      .+++....|.|.-|....      .+....+         ..-.....++.|+|+|..+.+-+.|..|+++...+++...
T Consensus       158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq  237 (558)
T KOG0882|consen  158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ  237 (558)
T ss_pred             ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence            999999999999998762      1111111         1234557899999999999999999999999999998776


Q ss_pred             HHHHH
Q 004214          543 EAFRK  547 (768)
Q Consensus       543 ~~~~~  547 (768)
                      +..+.
T Consensus       238 eiDE~  242 (558)
T KOG0882|consen  238 EIDEV  242 (558)
T ss_pred             hhhcc
Confidence            55443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.75  E-value=2.1e-07  Score=84.24  Aligned_cols=144  Identities=19%  Similarity=0.355  Sum_probs=91.7

Q ss_pred             CCEEEEEEeCCCeEEEEeCCCceEE-Eeee-cccCcEEEEEEecCCCcEEEEEeCC------CeEEEEeCCCCCCCCccc
Q 004214          296 GKILIVTGSKDNSVRLWDSESRCCV-GVGT-GHMGAVGAVAFSKKLQNFLVSGSSD------HTIKVWSFDGLSDDAEQP  367 (768)
Q Consensus       296 ~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~  367 (768)
                      +.. ++++..||.+.+++.+.-..+ .... .|.+. .+.++...+.  ++....-      +..+.|+++...      
T Consensus       101 ~t~-V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~------  170 (319)
T KOG4714|consen  101 DNR-VCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIK------  170 (319)
T ss_pred             CCc-eEecCCCceEEEEechHHHhhhhhcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccc------
Confidence            444 899999999999987652111 1111 12111 1222223322  2232222      334555554221      


Q ss_pred             cccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCce-EEEEeccCCCeEEEEEccC-CCEEEEeeCCC
Q 004214          368 MNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVS-VVTFRGHKRGIWSVEFSPV-DQVVITASGDK  444 (768)
Q Consensus       368 ~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~v~~s~~-~~~l~t~~~d~  444 (768)
                          ...........|.+++-+| ..+++++|+.||.+.+||.+.... ...+..|+.+++.+-|+|. +..|+++++||
T Consensus       171 ----t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedG  246 (319)
T KOG4714|consen  171 ----TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDG  246 (319)
T ss_pred             ----cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCC
Confidence                1111111234488999999 567888899999999999988743 3456789999999999995 67899999999


Q ss_pred             cEEEEeCCC
Q 004214          445 TIKIWSISD  453 (768)
Q Consensus       445 ~i~iwd~~~  453 (768)
                      .+--||..+
T Consensus       247 slw~wdas~  255 (319)
T KOG4714|consen  247 SLWHWDAST  255 (319)
T ss_pred             cEEEEcCCC
Confidence            999999754

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.74  E-value=5.2e-07  Score=81.70  Aligned_cols=95  Identities=20%  Similarity=0.278  Sum_probs=71.7

Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce-EEEeeecccCcEEEEEEecCCC
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-CVGVGTGHMGAVGAVAFSKKLQ  340 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~  340 (768)
                      +..+.|+++.......-......|.+++  ..|....++++|+.||.+-+||.+... +...+..|..+++.+-|+|..+
T Consensus       159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~--~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p  236 (319)
T KOG4714|consen  159 DNFYANTLDPIKTLIPSKKALDAVTALC--SHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP  236 (319)
T ss_pred             cceeeecccccccccccccccccchhhh--CCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc
Confidence            4555666654433322222233477775  667777789999999999999998764 3445678999999999999988


Q ss_pred             cEEEEEeCCCeEEEEeCC
Q 004214          341 NFLVSGSSDHTIKVWSFD  358 (768)
Q Consensus       341 ~~l~s~~~dg~i~iwd~~  358 (768)
                      ..|++++.||.+..||-.
T Consensus       237 ~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  237 EHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             hheeEecCCCcEEEEcCC
Confidence            899999999999999865

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.74  E-value=1.4e-05  Score=74.41  Aligned_cols=201  Identities=12%  Similarity=0.147  Sum_probs=114.5

Q ss_pred             ecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec------ccCcEEEEEEecCC-----CcEEEEEeCCCeEEEEeCCCCC
Q 004214          293 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG------HMGAVGAVAFSKKL-----QNFLVSGSSDHTIKVWSFDGLS  361 (768)
Q Consensus       293 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~  361 (768)
                      ++++..+||.+...|+|++||+....+...-..      -..+|..+.|.+..     ...|++-..+|.++-|-+..+.
T Consensus        51 WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt  130 (282)
T PF15492_consen   51 WSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGT  130 (282)
T ss_pred             ECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEccc
Confidence            344555699999999999999986544322221      23467777775532     2247777788888887764321


Q ss_pred             CCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCE--EEE
Q 004214          362 DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV--VIT  439 (768)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~t  439 (768)
                      ...-  ...........+...|+++.++|..++|++|+....      +++.    -......+++-..-.+..+  .++
T Consensus       131 ~q~y--~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~  198 (282)
T PF15492_consen  131 NQGY--QENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVT  198 (282)
T ss_pred             CCcc--eeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEcc
Confidence            1000  011112222335678999999999998888875432      0000    0011122222222111111  111


Q ss_pred             eeCCC------cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccC
Q 004214          440 ASGDK------TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH  505 (768)
Q Consensus       440 ~~~d~------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  505 (768)
                      ...|+      +-.+|.+-+.+...........|..|..||||+.|++...+|.|.+|++.+-.+...+..+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  199 SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            22221      1123333322222222235678999999999999999999999999999988877766543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.73  E-value=3.6e-08  Score=64.45  Aligned_cols=39  Identities=49%  Similarity=0.929  Sum_probs=36.5

Q ss_pred             CEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEE
Q 004214           20 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD   60 (768)
Q Consensus        20 ~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd   60 (768)
                      |++++.+.+|.+.|++|+|+|++..  +++|+.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~--~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNF--LASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSE--EEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEeccccc--ceeeCCCCEEEEEC
Confidence            4678999999999999999999777  99999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.71  E-value=1.7e-06  Score=90.87  Aligned_cols=244  Identities=14%  Similarity=0.084  Sum_probs=137.0

Q ss_pred             CCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCC
Q 004214            8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGS   87 (768)
Q Consensus         8 ~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~   87 (768)
                      ..|+|.||- ++|+..+... -.-.+++++|+|.  ..+||.|-.-|.+.+|...+.+.-.....|..+|..+.|||+|.
T Consensus        39 r~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~  114 (1416)
T KOG3617|consen   39 RGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPE--EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGT  114 (1416)
T ss_pred             CCceEEEEe-cCCCCCcccc-cceehhhhccChH--HHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCC
Confidence            456666664 3333222111 1234667999994  45699999999999999988877777778999999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeeeee-----cceeEe--eEEecCCCCCc---------------cccccccchh---hh
Q 004214           88 TLISAGRDKVVNLWDLRDYSCKLTVP-----TYEMVE--AVCAIPPGSAF---------------DSFLSSYNQQ---TI  142 (768)
Q Consensus        88 ~L~s~~~dg~i~vWd~~~~~~~~~~~-----~~~~v~--~~~~~~~~~~~---------------~~~~~~~~~~---~~  142 (768)
                      .|+|+..-|.|.+|...-...+...+     ....+.  +....+++...               ....+.....   ..
T Consensus       115 ~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~  194 (1416)
T KOG3617|consen  115 VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSD  194 (1416)
T ss_pred             eEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccc
Confidence            99999999999999876332222221     122222  22233332211               1100000000   01


Q ss_pred             hcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccC
Q 004214          143 KKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV  222 (768)
Q Consensus       143 ~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~  222 (768)
                      .......+..|+.++.+|+|+-.|-.+.+....+..             ....+.|.+....+.++..+-.+.++-....
T Consensus       195 ~ksgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~d-------------S~vQmLf~~~~eai~~i~e~lr~~l~~v~~~  261 (1416)
T KOG3617|consen  195 EKSGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLD-------------SEVQMLFMGYCEAISIIIEFLRDCLIFVLAK  261 (1416)
T ss_pred             cccCCCCCcEEEEEcCCceEEEEcCCCcEEEEEEcc-------------chHHHHHhcccceEEEEeeeceeeEEEecCC
Confidence            112233566888999999998888666532211110             0011223333333444444433333322211


Q ss_pred             ccc-----------------ce--------eeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEEC
Q 004214          223 PEK-----------------KM--------ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL  269 (768)
Q Consensus       223 ~~~-----------------~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~  269 (768)
                      ...                 .+        -.+..+--......+.+++|.. .+..++.|+..|.+.+|--
T Consensus       262 G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~-~~~~l~agt~~gnv~~w~~  332 (1416)
T KOG3617|consen  262 GTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGE-KEIRLWAGTKEGNVTIWLD  332 (1416)
T ss_pred             CchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEec-cceEEEecccCCcEEEeee
Confidence            100                 00        0000011112345688888874 6678899999999999964

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.69  E-value=8.7e-09  Score=108.02  Aligned_cols=219  Identities=14%  Similarity=0.249  Sum_probs=160.1

Q ss_pred             eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCC-eEE
Q 004214          275 SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-TIK  353 (768)
Q Consensus       275 ~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~i~  353 (768)
                      .+.+..|....+|++  ++...+. |+.|+..|.|++|++.+|........|.++|+.+.-+.+|...|.+++... -..
T Consensus      1094 w~~frd~~~~fTc~a--fs~~~~h-L~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIA--FSGGTNH-LAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             chhhhccccceeeEE--eecCCce-EEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence            345677888888886  5555555 999999999999999999999999999999999999999887666666555 567


Q ss_pred             EEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEE-ec---cCCCeEEEE
Q 004214          354 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF-RG---HKRGIWSVE  429 (768)
Q Consensus       354 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~---~~~~v~~v~  429 (768)
                      +|++....         .....+    ..-.++.|+..-..-+.|+......+||+.++.++.++ .+   ....-++..
T Consensus      1171 LW~~~s~~---------~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1171 LWDASSTG---------GPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred             Hhcccccc---------Cccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence            89886421         111111    23457788876555666776678999999998776653 22   222347788


Q ss_pred             EccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcE
Q 004214          430 FSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKI  509 (768)
Q Consensus       430 ~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  509 (768)
                      |+|+..+++   .||  .+||++..+.++.|...+. -..-.|+|.|..++.-+     -|||+++.+.+++...-  .=
T Consensus      1238 FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L--dq 1304 (1516)
T KOG1832|consen 1238 FSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL--DQ 1304 (1516)
T ss_pred             cCCCcceEe---eCc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec-----hhhhhHHHHHHhcCccc--cc
Confidence            999998876   445  5899999888888875542 22456999999988765     48999999988766422  22


Q ss_pred             EEEEEcCCCCEEE
Q 004214          510 WALAVGKKTEMFA  522 (768)
Q Consensus       510 ~~l~~s~~~~~l~  522 (768)
                      ..+.|...|..+.
T Consensus      1305 c~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1305 CAVTFNSTGDVMY 1317 (1516)
T ss_pred             eEEEeccCccchh
Confidence            4567777776554

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.69  E-value=8e-05  Score=67.98  Aligned_cols=111  Identities=10%  Similarity=0.009  Sum_probs=81.1

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA   81 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~   81 (768)
                      +++.|+..+.++--|..+|.....-. -..+|-+-+.- -|++  ++.|...|.+.+-+..+|+....+..-..-=..-.
T Consensus        25 ~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdf--VV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~  100 (354)
T KOG4649|consen   25 LVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDF--VVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ  100 (354)
T ss_pred             EEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCE--EEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence            56778888999999999988654321 23344443333 3455  99999999999999999988877764333222334


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecce
Q 004214           82 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE  116 (768)
Q Consensus        82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~  116 (768)
                      ..+++..+..++.|++....|..+..++.......
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG  135 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG  135 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEecccCC
Confidence            56789999999999999999999988887755443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.67  E-value=2.3e-08  Score=104.96  Aligned_cols=266  Identities=18%  Similarity=0.195  Sum_probs=177.0

Q ss_pred             EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC-eE
Q 004214          231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN-SV  309 (768)
Q Consensus       231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg-~i  309 (768)
                      ..+.+..++...++++|+. +.++|++|+..|.|++|+..+|.......+|..+++-+.  .+.++..+|.+++... -.
T Consensus      1093 ~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~ve--Ps~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVE--PSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             cchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCcccccccccccccccccc--ccCCcceeeeeccccCchH
Confidence            3445566777888899885 778999999999999999999999999999999999998  7778887666665554 67


Q ss_pred             EEEeCCC-ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEE
Q 004214          310 RLWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV  388 (768)
Q Consensus       310 ~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  388 (768)
                      .+|++.+ +.....+.    .-.++.|+.... .-+.|+......+||+.+......      ...-..+..-.-++..|
T Consensus      1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l~t------ylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQ-FRALGTEADDALLYDVQTCSPLQT------YLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred             HHhccccccCcccccc----ccceeehhhhHH-HHHhcccccceEEEecccCcHHHH------hcCcchhhhhhcccccc
Confidence            7998864 33333333    345677876533 344555556788999986532111      00000111122267889


Q ss_pred             ccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEE
Q 004214          389 APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL  468 (768)
Q Consensus       389 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  468 (768)
                      +|+..+++-   ||  .+||++..+.+..|...+.. ..-.|+|+|.-++.-+.     |||+++.+.++....-.  -.
T Consensus      1239 sP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc 1305 (1516)
T KOG1832|consen 1239 SPCDTLILN---DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QC 1305 (1516)
T ss_pred             CCCcceEee---Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ce
Confidence            999888764   44  48999988877776654422 23359999998888765     99999998887765322  24


Q ss_pred             EEEEEeCCCEEEEEeC--C---------------CcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 004214          469 RASFLTRGAQIVSCGA--D---------------GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG  524 (768)
Q Consensus       469 ~~~~s~~~~~l~s~~~--d---------------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~  524 (768)
                      .+.|+..|+.++..-.  |               ...+-|+......+.++. -...+..++-+|...+|...
T Consensus      1306 ~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~-v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIP-VDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred             EEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeee-cccchhhhhcCCccceEEEE
Confidence            5777777765543320  0               123445555566666665 34456666667766666544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.67  E-value=7.5e-08  Score=62.89  Aligned_cols=39  Identities=38%  Similarity=0.678  Sum_probs=37.2

Q ss_pred             CeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214           64 KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD  102 (768)
Q Consensus        64 ~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd  102 (768)
                      ++++.++.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            468899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.67  E-value=0.00014  Score=70.90  Aligned_cols=278  Identities=15%  Similarity=0.117  Sum_probs=170.4

Q ss_pred             CcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEe--------CCCcEEEEECCCCeeEEEecCc---cc---
Q 004214           10 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS--------DDATVRVWDLLAKKCVATLDKH---FS---   75 (768)
Q Consensus        10 g~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~--------~dg~I~iWd~~~~~~~~~l~~h---~~---   75 (768)
                      +.+.|+|.++++.+-.+..--  .-.+..+||++..+.++.-        ..-.|.+||..+-.....+.-.   ..   
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            589999999999777665322  2236689999986655542        2345999999999887754321   21   


Q ss_pred             -eeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceE
Q 004214           76 -RVTSMAITSDGSTLISAG--RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH  152 (768)
Q Consensus        76 -~V~~l~fs~d~~~L~s~~--~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (768)
                       ....+++|.||++++..-  -...|.|-|+..++.+..++.+.-...   .|.++                      ..
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~i---yP~~~----------------------~~  149 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLI---YPSGN----------------------RG  149 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEE---EEEET----------------------TE
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEE---EecCC----------------------Cc
Confidence             234578999999988764  456899999999999888876543222   22221                      26


Q ss_pred             EEEeeCCcEEEEEEcCCc-eeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEE
Q 004214          153 FITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELIL  231 (768)
Q Consensus       153 ~~~~~~~g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~  231 (768)
                      |.+.|.||.+....++.. +.. .....   -+ .......+....+...+..++..+.+|.++-.++........   .
T Consensus       150 F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~---~F-~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~---~  221 (342)
T PF06433_consen  150 FSMLCGDGSLLTVTLDADGKEA-QKSTK---VF-DPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFG---K  221 (342)
T ss_dssp             EEEEETTSCEEEEEETSTSSEE-EEEEE---ES-STTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEE---E
T ss_pred             eEEEecCCceEEEEECCCCCEe-Eeecc---cc-CCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccccc---C
Confidence            889999999999998844 333 21111   11 112223344445556677888899999999888776642111   1


Q ss_pred             Eeeecc----c----CCceeEEEEecCCCCEEEEEeC---------CCcEEEEECCCceeeeeeeCCccceEEEeeeeec
Q 004214          232 SKRLVG----Y----NEEILDLKFLGEEEQYLAVATN---------IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALS  294 (768)
Q Consensus       232 ~~~~~~----~----~~~i~~~~~~~~~~~~l~~~~~---------~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~  294 (768)
                      ...+..    .    .+.---++++...+.+++.-..         ...|.+||+.+++.+..+... .++.++.  ...
T Consensus       222 ~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~--Vsq  298 (342)
T PF06433_consen  222 PWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIA--VSQ  298 (342)
T ss_dssp             EEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEE--EES
T ss_pred             cccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEE--Ecc
Confidence            111110    0    1122235666555554444221         125888999999999888752 3455666  667


Q ss_pred             CCCEEEEEE-eCCCeEEEEeCCCceEEEeeec
Q 004214          295 SGKILIVTG-SKDNSVRLWDSESRCCVGVGTG  325 (768)
Q Consensus       295 ~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~  325 (768)
                      ++..+|++. ..++.+.+||..+++.++....
T Consensus       299 d~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  299 DDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             SSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             CCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            777667655 4579999999999999888764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.66  E-value=2.7e-05  Score=75.79  Aligned_cols=193  Identities=15%  Similarity=0.078  Sum_probs=98.5

Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC-CceEEEe----eecccCcEE-EEEE
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-SRCCVGV----GTGHMGAVG-AVAF  335 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~----~~~~~~~v~-~~~~  335 (768)
                      ..|.|.|+...+.+..+....  +..+  ....+ .. |.+-+.||.+.-..+. .|+....    +.....++. .-++
T Consensus       118 ~SVtVVDl~~~kvv~ei~~PG--C~~i--yP~~~-~~-F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~  191 (342)
T PF06433_consen  118 TSVTVVDLAAKKVVGEIDTPG--CWLI--YPSGN-RG-FSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAY  191 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEGTS--EEEE--EEEET-TE-EEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EE
T ss_pred             CeEEEEECCCCceeeeecCCC--EEEE--EecCC-Cc-eEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccce
Confidence            356666776666665543221  1111  12222 23 6666677777776665 3333321    111112211 2223


Q ss_pred             ecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE--eeccCCCeEEEEEccCCCEEEEEeC---CC-------c
Q 004214          336 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV--VAAHGKDINSLAVAPNDSLVCTGSQ---DR-------T  403 (768)
Q Consensus       336 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~---dg-------~  403 (768)
                      ...+. .++-.+.+|.|+--|+.........+........  ..--.+.-.-+++++..+.|.+.-.   +|       .
T Consensus       192 ~~~~~-~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgte  270 (342)
T PF06433_consen  192 SRDGG-RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTE  270 (342)
T ss_dssp             ETTTT-EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEE
T ss_pred             ECCCC-eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceE
Confidence            33323 3444667777777776644211100000000000  0001123345777775555544322   11       5


Q ss_pred             EEEEeCCCCceEEEEeccCCCeEEEEEccCCC-EEEEe-eCCCcEEEEeCCCCceeEEeec
Q 004214          404 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ-VVITA-SGDKTIKIWSISDGSCLKTFEG  462 (768)
Q Consensus       404 i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~t~-~~d~~i~iwd~~~~~~~~~~~~  462 (768)
                      |-+||+.+++.+..+.. ..++.+|..+.+.+ +|++. ..++.+.+||..+|+.++++..
T Consensus       271 VWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  271 VWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             EEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            88889999999998874 35688999999875 56544 4679999999999999999874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.65  E-value=7e-05  Score=72.19  Aligned_cols=243  Identities=12%  Similarity=0.112  Sum_probs=153.0

Q ss_pred             eEEEEecCCCCEEEEEeCCCc-EEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEE----EeCCCeEEEEeCC-C
Q 004214          243 LDLKFLGEEEQYLAVATNIEQ-VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVT----GSKDNSVRLWDSE-S  316 (768)
Q Consensus       243 ~~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~----~~~dg~i~iwd~~-~  316 (768)
                      ..++..|.....++++-.-|. ..+||..+++....+....+.-..=..+|+++++.++++    .+..|.|-|||.. +
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence            445666667777777777664 567999999888766543333222223377888874444    2345899999999 6


Q ss_pred             ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC--CE
Q 004214          317 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND--SL  394 (768)
Q Consensus       317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~  394 (768)
                      -+.+..+..|.-.-..+.+.|+++.+++.-+   -|.-                                  +|+.  ..
T Consensus        88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANG---GI~T----------------------------------hpd~GR~k  130 (305)
T PF07433_consen   88 YRRIGEFPSHGIGPHELLLMPDGETLVVANG---GIET----------------------------------HPDSGRAK  130 (305)
T ss_pred             cEEEeEecCCCcChhhEEEcCCCCEEEEEcC---CCcc----------------------------------CcccCcee
Confidence            7778888877777778889999864443321   1110                                  0100  01


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEE--E--eccCCCeEEEEEccCCCEEEEeeCCCc-------EEEEeCCCCceeEEee--
Q 004214          395 VCTGSQDRTACVWRLPDLVSVVT--F--RGHKRGIWSVEFSPVDQVVITASGDKT-------IKIWSISDGSCLKTFE--  461 (768)
Q Consensus       395 l~~~~~dg~i~i~d~~~~~~~~~--~--~~~~~~v~~v~~s~~~~~l~t~~~d~~-------i~iwd~~~~~~~~~~~--  461 (768)
                      |-..+.+.++.+.|..+++.+..  +  ..|...|..+++.++|..++..-..|.       |-+++  .+..+..+.  
T Consensus       131 LNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p  208 (305)
T PF07433_consen  131 LNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAP  208 (305)
T ss_pred             cChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCC
Confidence            11122334455556666666655  3  237778999999999876665433322       33333  233233222  


Q ss_pred             -----cCCCcEEEEEEEeCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 004214          462 -----GHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD  527 (768)
Q Consensus       462 -----~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d  527 (768)
                           .-.+.+-++++++++.++++.+- .|.+.+||..+++.+....  -..+..++..+++ ++++.+..
T Consensus       209 ~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG~G  277 (305)
T PF07433_consen  209 EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSGQG  277 (305)
T ss_pred             hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCCCc
Confidence                 34467889999999998866665 5689999999999988764  3456677777777 66655543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.64  E-value=7.3e-08  Score=90.61  Aligned_cols=143  Identities=16%  Similarity=0.291  Sum_probs=115.0

Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC-----ceeEEeecCCCcEEEE
Q 004214          396 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-----SCLKTFEGHTSSVLRA  470 (768)
Q Consensus       396 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~~  470 (768)
                      ++.+.+..+-+-|+.++.... |. ..+.|.++.|...++++..|+.+|.|..+|++.+     .+...+. |...|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence            444556678888888764332 33 5677889999999999999999999999999864     4556665 99999999


Q ss_pred             EEEe-CCCEEEEEeCCCcEEEEECCCCeE---EEEeccCCCcEEE--EEEcCCCCEEEEEeCCCcEEEEEcCCHHHH
Q 004214          471 SFLT-RGAQIVSCGADGLVKLWTVRTGEC---IATYDKHEDKIWA--LAVGKKTEMFATGGSDALVNLWHDSTAAER  541 (768)
Q Consensus       471 ~~s~-~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~--l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~  541 (768)
                      .... ++++|++.+.+|.|++||.+--++   +.++.+|...-.-  +.+.+....++++|.|...+||.+..+...
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL  381 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence            9877 788999999999999999988777   8899888765433  345677888999999999999999876543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.64  E-value=7.8e-07  Score=94.41  Aligned_cols=181  Identities=14%  Similarity=0.210  Sum_probs=134.1

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEecc
Q 004214          342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH  421 (768)
Q Consensus       342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  421 (768)
                      .++-|+-...+..+|++...          ...........|.-  +..+++.+.+|...|+|.+-|..+.+.+.++..|
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~----------e~r~~~v~a~~v~i--mR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aH  216 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEK----------ETRTTNVSASGVTI--MRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAH  216 (1118)
T ss_pred             ceeecchhhheeeeecccce----------eeeeeeccCCceEE--EEecCcEEEeecccceEEeecCCcCceeeeeecc
Confidence            46777777777778887542          22222222223333  3457899999999999999999999999999999


Q ss_pred             CCCeEEEEEccCCCEEEEeeC---------CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeC-CCEEEEEeCCCcEEEE
Q 004214          422 KRGIWSVEFSPVDQVVITASG---------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR-GAQIVSCGADGLVKLW  491 (768)
Q Consensus       422 ~~~v~~v~~s~~~~~l~t~~~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iw  491 (768)
                      .+.|.++...  |++|++++.         |..|+|||++.-+.+..+.-+.++ .-+.|.|. ...+++++..|...+-
T Consensus       217 s~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~v  293 (1118)
T KOG1275|consen  217 SGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFV  293 (1118)
T ss_pred             ccceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeec
Confidence            9999887776  899999875         556899999988777666655544 44677775 4578888889999998


Q ss_pred             ECC---CC-eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          492 TVR---TG-ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       492 d~~---~~-~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      |..   +. .-+..+......+.++++|++++.++.|..+|.|.+|....
T Consensus       294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~  343 (1118)
T KOG1275|consen  294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRP  343 (1118)
T ss_pred             cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence            833   22 12233333344599999999999999999999999998543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.62  E-value=7.6e-05  Score=69.60  Aligned_cols=237  Identities=14%  Similarity=0.159  Sum_probs=132.1

Q ss_pred             cCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee
Q 004214          200 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA  279 (768)
Q Consensus       200 ~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~  279 (768)
                      .++..++++..|..|.+-...+.-.....  ...........-..++|+ ++..+||.+...|.|++||+...... .+.
T Consensus         6 ~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~--kcqVpkD~~PQWRkl~WS-pD~tlLa~a~S~G~i~vfdl~g~~lf-~I~   81 (282)
T PF15492_consen    6 SSDGKLLAILQDQCIEIRSAKDDFSSIIG--KCQVPKDPNPQWRKLAWS-PDCTLLAYAESTGTIRVFDLMGSELF-VIP   81 (282)
T ss_pred             cCCCcEEEEEeccEEEEEeccCCchheeE--EEecCCCCCchheEEEEC-CCCcEEEEEcCCCeEEEEecccceeE-EcC
Confidence            35566777888888877665544321111  111122334456778887 68899999999999999999864433 322


Q ss_pred             C-C------ccceEEEeeeeecCC---CEEEEEEeCCCeEEEEeCCC-----ceEEEeee---cccCcEEEEEEecCCCc
Q 004214          280 G-H------SEIVLCLDTCALSSG---KILIVTGSKDNSVRLWDSES-----RCCVGVGT---GHMGAVGAVAFSKKLQN  341 (768)
Q Consensus       280 ~-~------~~~v~~l~~~~~~~~---~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~---~~~~~v~~~~~~~~~~~  341 (768)
                      . +      ...|..+.+......   ...|++-...|.++-|-+..     .+....+.   .+...|.++.++|..+ 
T Consensus        82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~-  160 (282)
T PF15492_consen   82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR-  160 (282)
T ss_pred             cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC-
Confidence            2 1      234444432111111   22356666778777776432     22223332   2467899999999866 


Q ss_pred             EEEEEeC-CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEE---ccCCCEEEEEeCCC------cEEEEeCCC
Q 004214          342 FLVSGSS-DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV---APNDSLVCTGSQDR------TACVWRLPD  411 (768)
Q Consensus       342 ~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---s~~~~~l~~~~~dg------~i~i~d~~~  411 (768)
                      +|++|+. ...-..+.                     +....+++-.+   +|..+. ++...|+      +..+|.+.+
T Consensus       161 LLlVgG~~~~~~~~s~---------------------a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~  218 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSK---------------------ASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPS  218 (282)
T ss_pred             EEEEeccCCCCCcccc---------------------ccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccc
Confidence            5555543 32100000                     00111111111   111111 1111111      123444433


Q ss_pred             CceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC
Q 004214          412 LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH  463 (768)
Q Consensus       412 ~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~  463 (768)
                      .+...........|..|..||||++||+...+|.|.+|++.+-++.+.+..+
T Consensus       219 ~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  219 FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            3332222335678999999999999999999999999999888877776533

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.58  E-value=0.00055  Score=62.67  Aligned_cols=262  Identities=15%  Similarity=0.090  Sum_probs=133.0

Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEE
Q 004214          253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA  332 (768)
Q Consensus       253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  332 (768)
                      ++++.|...|.+++.+..++.....+..-. .|.+-+. ..++++ ++..|+.|++.+..|..+..++...+-..+...+
T Consensus        64 dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~-~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~s  140 (354)
T KOG4649|consen   64 DFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQ-CDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVS  140 (354)
T ss_pred             CEEEEEEccCcEEEEEecchhheeeeeehh-hhccceE-EcCCCc-eEEEecCCCcEEEecccccceEEecccCCceecc
Confidence            357777777888888888887665554321 2222221 224444 5999999999999999998888776544444444


Q ss_pred             EEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE--EEEccCCCEEEEEeCCCcEEEEeCC
Q 004214          333 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS--LAVAPNDSLVCTGSQDRTACVWRLP  410 (768)
Q Consensus       333 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~s~~~~~l~~~~~dg~i~i~d~~  410 (768)
                      -++.|... -|..+...|.+.--........        .. .......+|.+  ++   -+..+..++-||.+.-++ +
T Consensus       141 P~i~~g~~-sly~a~t~G~vlavt~~~~~~~--------~~-w~~~~~~PiF~splc---v~~sv~i~~VdG~l~~f~-~  206 (354)
T KOG4649|consen  141 PVIAPGDG-SLYAAITAGAVLAVTKNPYSST--------EF-WAATRFGPIFASPLC---VGSSVIITTVDGVLTSFD-E  206 (354)
T ss_pred             ceecCCCc-eEEEEeccceEEEEccCCCCcc--------ee-hhhhcCCccccCcee---ccceEEEEEeccEEEEEc-C
Confidence            45555323 3555555555544433322100        00 00001112211  11   133455556666666666 5


Q ss_pred             CCceEEEEeccCCCeEE-EEEc-cCCCEEEEeeCCCc--------EEEEeCCCCceeEEeecCCCcEEEEEEE-e---CC
Q 004214          411 DLVSVVTFRGHKRGIWS-VEFS-PVDQVVITASGDKT--------IKIWSISDGSCLKTFEGHTSSVLRASFL-T---RG  476 (768)
Q Consensus       411 ~~~~~~~~~~~~~~v~~-v~~s-~~~~~l~t~~~d~~--------i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~---~~  476 (768)
                      .++.+..+. ..++|.. -+-+ |..+.+..+..+..        -.+|..++|...+..-..   -....+. +   ..
T Consensus       207 sG~qvwr~~-t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p---~l~F~~h~~~~S~~  282 (354)
T KOG4649|consen  207 SGRQVWRPA-TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSP---KLRFDLHSPGISYP  282 (354)
T ss_pred             CCcEEEeec-CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCc---ccceeccCCCCcch
Confidence            555555333 2233321 1111 33344444444332        234555555333222111   0111111 1   23


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEE---E-----E-cC--CCCEEEEEeCCCcEEEEEcCC
Q 004214          477 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL---A-----V-GK--KTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       477 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l---~-----~-s~--~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      ++|..++.||.+.|.-++.  .+.....|.+.+..+   .     | ||  -+.+|+.|+.|..|+-||+.+
T Consensus       283 ~ll~~~s~dgkv~il~~~~--sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl~~  352 (354)
T KOG4649|consen  283 KLLRRSSGDGKVMILMTSK--SLAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLDT  352 (354)
T ss_pred             hhhhhhcCCCcEEEEEecc--cccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEeccc
Confidence            5677888899888874432  233444444433222   1     1 23  134688899999999999876

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=1.1e-05  Score=77.92  Aligned_cols=265  Identities=13%  Similarity=0.050  Sum_probs=152.8

Q ss_pred             EEEEECCCCeeEEEecCccceeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccc
Q 004214           56 VRVWDLLAKKCVATLDKHFSRVTSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFL  134 (768)
Q Consensus        56 I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~-~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  134 (768)
                      |++.+..+.+....+.+|...|..++|||... +|..++.+..|.|.|+++..++..+..+..+.+++|.-+...     
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h-----  249 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERH-----  249 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcc-----
Confidence            56666656666666778888999999999877 788899999999999999999999999999999999877642     


Q ss_pred             cccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeee-ecCCceeecccccCcccceeEE------EEccCCCceEE
Q 004214          135 SSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE-QKSSDVTISFEMDDSKRGFTAA------TVLPSNQGLLC  207 (768)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~  207 (768)
                                       +++.|-.+|.|.+||+....-.. ......        ....+..+      ..++.+..+++
T Consensus       250 -----------------~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~--------t~~pv~~i~~~~~n~~f~~gglLv~  304 (463)
T KOG1645|consen  250 -----------------VIYAGLQNGMVLVYDMRQPEGPLMELVANV--------TINPVHKIAPVQPNKIFTSGGLLVF  304 (463)
T ss_pred             -----------------eeEEeccCceEEEEEccCCCchHhhhhhhh--------ccCcceeecccCccccccccceEEe
Confidence                             78888999999999997762111 000000        00111111      22233333333


Q ss_pred             EEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCc------EEE-EECCCceeeee-ee
Q 004214          208 VTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ------VQV-YDLSSMSCSYV-LA  279 (768)
Q Consensus       208 ~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~------i~i-~d~~~~~~~~~-~~  279 (768)
                      ...+  +..|+.....+..    ......+..+...++.+.+..+..|++.-.+..      +-. .|...|..+.. -.
T Consensus       305 ~lt~--l~f~ei~~s~~~~----p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~  378 (463)
T KOG1645|consen  305 ALTV--LQFYEIVFSAECL----PCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRR  378 (463)
T ss_pred             eehh--hhhhhhhccccCC----CcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecc
Confidence            3322  3344433222110    111112334455666666555555555444211      111 11112221111 11


Q ss_pred             CCcc----ceEE-EeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEec-CCCcEEEEEeCCCeEE
Q 004214          280 GHSE----IVLC-LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIK  353 (768)
Q Consensus       280 ~~~~----~v~~-l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~i~  353 (768)
                      ++.+    .+.. -+....+++..++.+|+..+.+.+||..+.+.+..+... .+|..++... +++.+|++-. |..++
T Consensus       379 ~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~  456 (463)
T KOG1645|consen  379 TYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVH  456 (463)
T ss_pred             cccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecccC-cceeecceeecCCcchhhhee-cceEE
Confidence            1100    0000 000123444555667777889999999999998887654 7788777654 3444555444 55677


Q ss_pred             EEeCC
Q 004214          354 VWSFD  358 (768)
Q Consensus       354 iwd~~  358 (768)
                      +|..+
T Consensus       457 Iyk~e  461 (463)
T KOG1645|consen  457 IYKNE  461 (463)
T ss_pred             EEecC
Confidence            77643

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.50  E-value=0.0001  Score=81.60  Aligned_cols=242  Identities=12%  Similarity=0.108  Sum_probs=139.6

Q ss_pred             CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214          239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC  318 (768)
Q Consensus       239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  318 (768)
                      ++.|.++.|.. +.+.+++++..|.|.+.|.++.... ....-...|.+++  ++++... ++..+..+++.+-.. +..
T Consensus        68 d~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aas--wS~Dee~-l~liT~~~tll~mT~-~f~  141 (1265)
T KOG1920|consen   68 DDEIVSVQFLA-DTNSICVITALGDIILVDPETLELE-IVGNVDNGISAAS--WSPDEEL-LALITGRQTLLFMTK-DFE  141 (1265)
T ss_pred             CcceEEEEEec-ccceEEEEecCCcEEEEccccccee-eeeeccCceEEEe--ecCCCcE-EEEEeCCcEEEEEec-ccc
Confidence            36899999985 6667788888899999988776543 3333456677776  6666665 777777777665432 222


Q ss_pred             EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccc-cccceeeEeeccCCCeEEEEEccCCCEEEE
Q 004214          319 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP-MNLKAKAVVAAHGKDINSLAVAPNDSLVCT  397 (768)
Q Consensus       319 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  397 (768)
                      ++....-+      ..-.+.+  -++.+++...=.-+.-..+....... ...+..... ...+.=+++.|--||.++|+
T Consensus       142 ~i~E~~L~------~d~~~~s--k~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~-~~~~~~~~IsWRgDg~~fAV  212 (1265)
T KOG1920|consen  142 PIAEKPLD------ADDERKS--KFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQI-EQDDHKTSISWRGDGEYFAV  212 (1265)
T ss_pred             chhccccc------ccccccc--ccceecccccceeeecchhhhcccccccccccccch-hhccCCceEEEccCCcEEEE
Confidence            22211111      1111221  24444443322222221111000000 000000000 12223357899999999998


Q ss_pred             Ee-----CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee---CCCcEEEEeCCCCceeE----EeecCCC
Q 004214          398 GS-----QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS---GDKTIKIWSISDGSCLK----TFEGHTS  465 (768)
Q Consensus       398 ~~-----~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~---~d~~i~iwd~~~~~~~~----~~~~~~~  465 (768)
                      ..     .-+.|++||.+ +..-..-....+--.+++|-|.|..+++-.   .|+.|.+|.- +|-...    .+.....
T Consensus       213 s~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~  290 (1265)
T KOG1920|consen  213 SFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEK  290 (1265)
T ss_pred             EEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCccccc
Confidence            32     23789999976 433222222334456899999999998753   4567888873 443333    2333344


Q ss_pred             cEEEEEEEeCCCEEEE---EeCCCcEEEEECCCCe
Q 004214          466 SVLRASFLTRGAQIVS---CGADGLVKLWTVRTGE  497 (768)
Q Consensus       466 ~v~~~~~s~~~~~l~s---~~~dg~i~iwd~~~~~  497 (768)
                      .+..++|+.++..|++   ......|++|-+.+..
T Consensus       291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             chheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            5899999999999987   4444469999988764

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.48  E-value=2.6e-06  Score=90.66  Aligned_cols=187  Identities=16%  Similarity=0.211  Sum_probs=138.9

Q ss_pred             EEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEE
Q 004214            3 ALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAI   82 (768)
Q Consensus         3 latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~f   82 (768)
                      ++.||-...+..+|..+++..+...-..+.|+-|+...  +.  +++|...|+|.+-|..+.+.++++..|++.|.++..
T Consensus       150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nn--r~--lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv  225 (1118)
T KOG1275|consen  150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNN--RN--LFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV  225 (1118)
T ss_pred             eeecchhhheeeeecccceeeeeeeccCCceEEEEecC--cE--EEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence            56688888899999999987776665555688777743  55  999999999999999999999999999999987666


Q ss_pred             cCCCCEEEEEe---------CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEE
Q 004214           83 TSDGSTLISAG---------RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF  153 (768)
Q Consensus        83 s~d~~~L~s~~---------~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (768)
                      .  |+.|++||         .|..|+|||++..+.+..+..+....-+.|.|.-                      ...+
T Consensus       226 ~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl----------------------~t~~  281 (1118)
T KOG1275|consen  226 Q--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSL----------------------TTRL  281 (1118)
T ss_pred             c--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccc----------------------cceE
Confidence            4  89999998         3667899999998877776655554444555432                      2367


Q ss_pred             EEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCc
Q 004214          154 ITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP  223 (768)
Q Consensus       154 ~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~  223 (768)
                      ++++..|...+-|..+-.      ...............+..+.++++++.++.+..+|.+.+|.....+
T Consensus       282 ~V~S~sGq~q~vd~~~ls------NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~~P  345 (1118)
T KOG1275|consen  282 AVTSQSGQFQFVDTATLS------NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRPQP  345 (1118)
T ss_pred             EEEecccceeeccccccC------CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCCCC
Confidence            888888888887733220      0000001111223457888999999999999999999999844433

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=6.4e-05  Score=80.06  Aligned_cols=208  Identities=15%  Similarity=0.182  Sum_probs=137.8

Q ss_pred             ecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccc-eEEEeeeeecCCCEEEEEEeCCC-----eEEEEeCCCc----
Q 004214          248 LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEI-VLCLDTCALSSGKILIVTGSKDN-----SVRLWDSESR----  317 (768)
Q Consensus       248 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~----  317 (768)
                      ..+++..++.|+.+|.|.+++-. .+..+.++.+... +..+   +..++..+|++.+.|+     .+++|+++..    
T Consensus        31 ~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L---~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   31 CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFL---YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             EcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHh---hcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            34678899999999999988743 3333455555555 4444   4455545566666554     5899998632    


Q ss_pred             --eEE---Eeee----cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEE
Q 004214          318 --CCV---GVGT----GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV  388 (768)
Q Consensus       318 --~~~---~~~~----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  388 (768)
                        .++   +.+.    ..+.++.+++++.+-+ .+|+|-.+|.|..+.-+-...      .............+|+.+++
T Consensus       107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RD------rgsr~~~~~~~~~pITgL~~  179 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRD------RGSRQDYSHRGKEPITGLAL  179 (933)
T ss_pred             CcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhc------cccceeeeccCCCCceeeEE
Confidence              233   1111    2356788999998844 799999999999985432111      11122223345679999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEeCCCCce-EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee-cCCCc
Q 004214          389 APNDSLVCTGSQDRTACVWRLPDLVS-VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-GHTSS  466 (768)
Q Consensus       389 s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~~~  466 (768)
                      ..++..++.+..-..|.+|.+....+ ...+..|..++.|..+++...-+++++. ..+.+|+.....+-..|. ||...
T Consensus       180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~  258 (933)
T KOG2114|consen  180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKE  258 (933)
T ss_pred             ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEE
Confidence            99888733333346799999874442 4447778889999999986664555544 569999988766667776 66554


Q ss_pred             E
Q 004214          467 V  467 (768)
Q Consensus       467 v  467 (768)
                      .
T Consensus       259 ~  259 (933)
T KOG2114|consen  259 M  259 (933)
T ss_pred             E
Confidence            3

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.45  E-value=0.00022  Score=75.50  Aligned_cols=211  Identities=12%  Similarity=-0.009  Sum_probs=126.5

Q ss_pred             CCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeC---C-CeEEEEeCCCCCCCCcccccc
Q 004214          295 SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS---D-HTIKVWSFDGLSDDAEQPMNL  370 (768)
Q Consensus       295 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---d-g~i~iwd~~~~~~~~~~~~~~  370 (768)
                      +++.+..+.-..+.+.+.|..+.+....+.-.. ....+.++|+|+. +++.+.   . +++..-+....          
T Consensus       203 DGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~-afvTsyNsE~G~tl~em~a~e~----------  270 (635)
T PRK02888        203 DGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKY-AFSTCYNSEEGVTLAEMMAAER----------  270 (635)
T ss_pred             CCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCE-EEEeccCcccCcceeeeccccC----------
Confidence            444433344445677788888877666554322 4466788888774 444432   1 12222221100          


Q ss_pred             ceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-----CceEEEEeccCCCeEEEEEccCCCEEEEeeC-CC
Q 004214          371 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD-----LVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DK  444 (768)
Q Consensus       371 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d~  444 (768)
                      .....+  .-..  .-++.++|++...+  ++.|.+.|..+     .+.+..+. -....+.+.++|||+++++++. +.
T Consensus       271 d~~vvf--ni~~--iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~  343 (635)
T PRK02888        271 DWVVVF--NIAR--IEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSP  343 (635)
T ss_pred             ceEEEE--chHH--HHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCC
Confidence            000000  0000  01334577776663  57899999988     34444444 5567789999999998877664 89


Q ss_pred             cEEEEeCCCCce------------eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC----------CeEEEEe
Q 004214          445 TIKIWSISDGSC------------LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT----------GECIATY  502 (768)
Q Consensus       445 ~i~iwd~~~~~~------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~  502 (768)
                      +|.|+|+.+.+.            +.+.+- .......+|.++|+...|-.-|..|..|++.+          ...+..+
T Consensus       344 tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~  422 (635)
T PRK02888        344 TVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKL  422 (635)
T ss_pred             cEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecc
Confidence            999999987542            333332 22334578999998888888899999999876          3455555


Q ss_pred             ccCCCcEEE-----EEEcCCCCEEEEEe
Q 004214          503 DKHEDKIWA-----LAVGKKTEMFATGG  525 (768)
Q Consensus       503 ~~~~~~v~~-----l~~s~~~~~l~s~~  525 (768)
                      ..|-.+---     =.-.|+|++|++..
T Consensus       423 dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        423 DVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             cCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            544433211     12367888888764

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.43  E-value=0.00037  Score=75.31  Aligned_cols=241  Identities=11%  Similarity=0.083  Sum_probs=139.4

Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeeCCccc-----eEEEeeeeecCCCEEEEEEe---------CCCeEEEEeCCCce
Q 004214          253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEI-----VLCLDTCALSSGKILIVTGS---------KDNSVRLWDSESRC  318 (768)
Q Consensus       253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-----v~~l~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~  318 (768)
                      ..+++++.++.|+-+|..+++.+.........     +.+-   ..-.+.. ++.++         .+|.+..+|..+++
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ss---P~v~~~~-v~vg~~~~~~~~~~~~g~v~alD~~TG~  186 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGA---PTIVKKL-VIIGSSGAEFFACGVRGALRAYDVETGK  186 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCC---CEEECCE-EEEeccccccccCCCCcEEEEEECCCCc
Confidence            68888889999999999999988776543221     1110   1111233 44443         36889999999998


Q ss_pred             EEEeeecccC--------------------cE-EEEEEecCCCcEEEEEeCCC------------------eEEEEeCCC
Q 004214          319 CVGVGTGHMG--------------------AV-GAVAFSKKLQNFLVSGSSDH------------------TIKVWSFDG  359 (768)
Q Consensus       319 ~~~~~~~~~~--------------------~v-~~~~~~~~~~~~l~s~~~dg------------------~i~iwd~~~  359 (768)
                      .+..+.....                    .+ ...++.+.+. .++.++.++                  .|.-+|..+
T Consensus       187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t  265 (488)
T cd00216         187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT  265 (488)
T ss_pred             eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence            8876654211                    01 1233333333 566776555                  677777765


Q ss_pred             CCCCCccccccceeeEeeccCCCe-EEEEEccCCC---EEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCC
Q 004214          360 LSDDAEQPMNLKAKAVVAAHGKDI-NSLAVAPNDS---LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ  435 (768)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~  435 (768)
                      +...-.................++ ..+. .-++.   .+++++.+|.+..+|..+++.+......   ...++.+|  .
T Consensus       266 G~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~  339 (488)
T cd00216         266 GKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--G  339 (488)
T ss_pred             CCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--c
Confidence            532111000000000000000000 0010 11333   6788889999999999999988765422   11233344  2


Q ss_pred             EEEEe------------------eCCCcEEEEeCCCCceeEEeecCC--------CcEEEEEEEeCCCEEEEEeCCCcEE
Q 004214          436 VVITA------------------SGDKTIKIWSISDGSCLKTFEGHT--------SSVLRASFLTRGAQIVSCGADGLVK  489 (768)
Q Consensus       436 ~l~t~------------------~~d~~i~iwd~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~s~~~dg~i~  489 (768)
                      .++.+                  ..+|.+.-.|+.+|+.+-+.....        .+...-.....+..|+.++.||.|+
T Consensus       340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~  419 (488)
T cd00216         340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFR  419 (488)
T ss_pred             eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEE
Confidence            23222                  235788889999998887765321        1111111223567899999999999


Q ss_pred             EEECCCCeEEEEecc
Q 004214          490 LWTVRTGECIATYDK  504 (768)
Q Consensus       490 iwd~~~~~~~~~~~~  504 (768)
                      .+|.++|+.+.+++.
T Consensus       420 ald~~tG~~lW~~~~  434 (488)
T cd00216         420 AFDATTGKELWKFRT  434 (488)
T ss_pred             EEECCCCceeeEEEC
Confidence            999999999988864

The alignment model contains an 8-bladed beta-propeller.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=7e-06  Score=86.45  Aligned_cols=180  Identities=14%  Similarity=0.189  Sum_probs=128.1

Q ss_pred             CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 004214          328 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW  407 (768)
Q Consensus       328 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~  407 (768)
                      ..++|++++..   +++-|+.+|.|++++.....            .....|...      ..+|.++++++.||+|.|.
T Consensus        40 D~is~~av~~~---~~~~GtH~g~v~~~~~~~~~------------~~~~~~s~~------~~~Gey~asCS~DGkv~I~   98 (846)
T KOG2066|consen   40 DAISCCAVHDK---FFALGTHRGAVYLTTCQGNP------------KTNFDHSSS------ILEGEYVASCSDDGKVVIG   98 (846)
T ss_pred             hHHHHHHhhcc---eeeeccccceEEEEecCCcc------------ccccccccc------ccCCceEEEecCCCcEEEe
Confidence            45666666643   79999999999999886431            111222222      5689999999999999999


Q ss_pred             eCCCCceEEEEeccCCCeEEEEEccC-----CCEEEEeeCCCcEEEEeCC---CCceeEEeecCCCcEEEEEEEeCCCEE
Q 004214          408 RLPDLVSVVTFRGHKRGIWSVEFSPV-----DQVVITASGDKTIKIWSIS---DGSCLKTFEGHTSSVLRASFLTRGAQI  479 (768)
Q Consensus       408 d~~~~~~~~~~~~~~~~v~~v~~s~~-----~~~l~t~~~d~~i~iwd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l  479 (768)
                      .+-+.+...++. ...++.+++++|+     .+.+++|+.-| +.++.-+   ....+ .+....++|.++.|.  |+++
T Consensus        99 sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lI  173 (846)
T KOG2066|consen   99 SLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLI  173 (846)
T ss_pred             eccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEE
Confidence            998888777666 5689999999998     56888998888 7776532   11222 355567899999986  7799


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEeccCCCcE------EEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          480 VSCGADGLVKLWTVRTGECIATYDKHEDKI------WALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       480 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v------~~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      |-++.+| |+|||+.+.+.+..+......+      ..+.|.++.+.++--+  .+|.|..+.
T Consensus       174 AWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~--d~v~i~~I~  233 (846)
T KOG2066|consen  174 AWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG--DSVKICSIK  233 (846)
T ss_pred             EEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC--CeEEEEEEe
Confidence            9998888 9999999998888776443332      3577776665444322  245555554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.41  E-value=0.00013  Score=70.45  Aligned_cols=203  Identities=15%  Similarity=0.146  Sum_probs=140.0

Q ss_pred             EEEEEEecCCCcEEEEEeCCCe-EEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-----CCc
Q 004214          330 VGAVAFSKKLQNFLVSGSSDHT-IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-----DRT  403 (768)
Q Consensus       330 v~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----dg~  403 (768)
                      ...++.+|.....++.+-.-|+ ..+||..++......  ....-..+.+|      -+||+||++|++.-.     .|.
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~--~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~   78 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL--WAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGV   78 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE--cCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEE
Confidence            3456777866666677766665 556888765422111  11122233333      579999999998643     478


Q ss_pred             EEEEeCC-CCceEEEEeccCCCeEEEEEccCCCEEEEeeC------------------CCcEEEEeCCCCceeEEee---
Q 004214          404 ACVWRLP-DLVSVVTFRGHKRGIWSVEFSPVDQVVITASG------------------DKTIKIWSISDGSCLKTFE---  461 (768)
Q Consensus       404 i~i~d~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~------------------d~~i~iwd~~~~~~~~~~~---  461 (768)
                      |-|||.. +.+.+..+..|.-.-..+.+.|||+.|+++-.                  +-++...|..+|+.+.+..   
T Consensus        79 IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~  158 (305)
T PF07433_consen   79 IGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP  158 (305)
T ss_pred             EEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc
Confidence            9999998 77888899988888889999999987777632                  2346667788888887733   


Q ss_pred             -cCCCcEEEEEEEeCCCEEEEEeCCCc-------EEEEECCCCeEEEEec-------cCCCcEEEEEEcCCCCEEEEEe-
Q 004214          462 -GHTSSVLRASFLTRGAQIVSCGADGL-------VKLWTVRTGECIATYD-------KHEDKIWALAVGKKTEMFATGG-  525 (768)
Q Consensus       462 -~~~~~v~~~~~s~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~-------~~~~~v~~l~~s~~~~~l~s~~-  525 (768)
                       -|..+|..+++.++|..++..-..|.       |-+++  .++.+..+.       ...+-+-++++++++..+++.+ 
T Consensus       159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP  236 (305)
T PF07433_consen  159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP  236 (305)
T ss_pred             cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence             47789999999999987776655442       34443  333233332       2346688999999998876555 


Q ss_pred             CCCcEEEEEcCCHHHHH
Q 004214          526 SDALVNLWHDSTAAERE  542 (768)
Q Consensus       526 ~dg~v~vw~~~~~~~~~  542 (768)
                      ..|.+.+||..++....
T Consensus       237 rGg~~~~~d~~tg~~~~  253 (305)
T PF07433_consen  237 RGGRVAVWDAATGRLLG  253 (305)
T ss_pred             CCCEEEEEECCCCCEee
Confidence            67789999998876543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.41  E-value=0.00016  Score=78.13  Aligned_cols=280  Identities=11%  Similarity=0.105  Sum_probs=162.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCceeeeeeeCCcc------ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec
Q 004214          252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE------IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG  325 (768)
Q Consensus       252 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~------~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  325 (768)
                      +..+.+++.++.++-+|..+++..........      .+..-- .....++. ++.++.+|.|+.+|..+++.+..+..
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g-~~~~~~~~-V~v~~~~g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRG-VAYWDPRK-VFFGTFDGRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCC-cEEccCCe-EEEecCCCeEEEEECCCCCEeeeecC
Confidence            34667777789999999999988776643322      010000 01112144 77888899999999999998877654


Q ss_pred             ccCc-----E-EEEEEecCCCcEEEEEe---------CCCeEEEEeCCCCCCCCccccccceeeEee---------ccC-
Q 004214          326 HMGA-----V-GAVAFSKKLQNFLVSGS---------SDHTIKVWSFDGLSDDAEQPMNLKAKAVVA---------AHG-  380 (768)
Q Consensus       326 ~~~~-----v-~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------~~~-  380 (768)
                      ....     + .+..+..  . +++.++         .+|.+..+|..++...-.............         .+. 
T Consensus       139 ~~~~~~~~~i~ssP~v~~--~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g  215 (488)
T cd00216         139 NDQVPPGYTMTGAPTIVK--K-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG  215 (488)
T ss_pred             CCCcCcceEecCCCEEEC--C-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence            3221     1 1122222  2 344443         357788888776532211110000000000         000 


Q ss_pred             CCe-EEEEEccCCCEEEEEeCCC------------------cEEEEeCCCCceEEEEeccCCCeE------EEEEc----
Q 004214          381 KDI-NSLAVAPNDSLVCTGSQDR------------------TACVWRLPDLVSVVTFRGHKRGIW------SVEFS----  431 (768)
Q Consensus       381 ~~i-~~~~~s~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~v~------~v~~s----  431 (768)
                      ..+ .+.++++.+..+++++.++                  .+.-+|..+++....++.-....+      ...+.    
T Consensus       216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~  295 (488)
T cd00216         216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP  295 (488)
T ss_pred             CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence            111 2345566667788887665                  699999999999887653211111      11111    


Q ss_pred             cCCC---EEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEE------------------eCCCcEEE
Q 004214          432 PVDQ---VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSC------------------GADGLVKL  490 (768)
Q Consensus       432 ~~~~---~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~------------------~~dg~i~i  490 (768)
                      -++.   .+++++.+|.+...|..+|+.+.......   ..+..+|  ..++.+                  ..+|.+.-
T Consensus       296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~A  370 (488)
T cd00216         296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAA  370 (488)
T ss_pred             cCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEE
Confidence            1233   67888889999999999999987765211   1122333  233322                  24678999


Q ss_pred             EECCCCeEEEEeccCC--------CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHH
Q 004214          491 WTVRTGECIATYDKHE--------DKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER  541 (768)
Q Consensus       491 wd~~~~~~~~~~~~~~--------~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~  541 (768)
                      .|..+|+.+.+.....        .+...-.....+..|++++.||.|+.+|..+++..
T Consensus       371 lD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~l  429 (488)
T cd00216         371 LDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKEL  429 (488)
T ss_pred             EeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCcee
Confidence            9999999888775331        11111011125678888999999999999888654

The alignment model contains an 8-bladed beta-propeller.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=3.1e-05  Score=81.78  Aligned_cols=170  Identities=15%  Similarity=0.175  Sum_probs=118.2

Q ss_pred             EEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec
Q 004214          299 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA  378 (768)
Q Consensus       299 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  378 (768)
                      +++-|+.+|.|++++.....  .....|...      ..+|. ++++|+.||+|.+-.+-+...           .....
T Consensus        51 ~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~-----------~~~~d  110 (846)
T KOG2066|consen   51 FFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDE-----------ITQYD  110 (846)
T ss_pred             eeeeccccceEEEEecCCcc--ccccccccc------ccCCc-eEEEecCCCcEEEeeccCCcc-----------ceeEe
Confidence            59999999999999876543  233334333      44544 899999999999987764421           11233


Q ss_pred             cCCCeEEEEEccC-----CCEEEEEeCCCcEEEEeCCC--CceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214          379 HGKDINSLAVAPN-----DSLVCTGSQDRTACVWRLPD--LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI  451 (768)
Q Consensus       379 ~~~~i~~~~~s~~-----~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~  451 (768)
                      ...++.+++++|+     .+.+++|+.-| +.++.-.=  .+....+....++|.++.|.  |+++|=++.+| |+|||+
T Consensus       111 f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~  186 (846)
T KOG2066|consen  111 FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDT  186 (846)
T ss_pred             cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEec
Confidence            4578999999997     57899999888 77775321  11222455667899999998  88888887766 999999


Q ss_pred             CCCceeEEeecCCCcE------EEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214          452 SDGSCLKTFEGHTSSV------LRASFLTRGAQIVSCGADGLVKLWTVR  494 (768)
Q Consensus       452 ~~~~~~~~~~~~~~~v------~~~~~s~~~~~l~s~~~dg~i~iwd~~  494 (768)
                      .+++.+..++.....+      ..+.|.++. .|+.|-. .+|+|..++
T Consensus       187 ~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~-d~v~i~~I~  233 (846)
T KOG2066|consen  187 PTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWG-DSVKICSIK  233 (846)
T ss_pred             cccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecC-CeEEEEEEe
Confidence            9988887776433332      346676654 4555443 468888877

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.36  E-value=0.00038  Score=73.75  Aligned_cols=149  Identities=12%  Similarity=0.073  Sum_probs=98.0

Q ss_pred             CeEEEEEccCCCEEEEEeCCC----cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC----
Q 004214          382 DINSLAVAPNDSLVCTGSQDR----TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD----  453 (768)
Q Consensus       382 ~i~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~----  453 (768)
                      ....++++|+|+++++.+.+.    ++...+..+...+..+...  .+  -.+.++|++...+  ++.|.+.|..+    
T Consensus       236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~  309 (635)
T PRK02888        236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--EEAVKAGKFKTIG--GSKVPVVDGRKAANA  309 (635)
T ss_pred             CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HH--HHhhhCCCEEEEC--CCEEEEEECCccccC
Confidence            446678899999998886432    2333332222211111110  00  1234567776663  57899999988    


Q ss_pred             C-ceeEEeecCCCcEEEEEEEeCCCEEEEEeC-CCcEEEEECCCCeE------------EEEeccCCCcEEEEEEcCCCC
Q 004214          454 G-SCLKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGEC------------IATYDKHEDKIWALAVGKKTE  519 (768)
Q Consensus       454 ~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~------------~~~~~~~~~~v~~l~~s~~~~  519 (768)
                      + ..+..+. -......+.++|||+++++++. +.+|.|.|+.+.+.            +..... .......+|.++|.
T Consensus       310 ~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~  387 (635)
T PRK02888        310 GSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGN  387 (635)
T ss_pred             CcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCC
Confidence            3 4444444 5566778999999999877665 88999999987552            444433 22334578999999


Q ss_pred             EEEEEeCCCcEEEEEcCCH
Q 004214          520 MFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       520 ~l~s~~~dg~v~vw~~~~~  538 (768)
                      ...|-.-|..|..|++.+.
T Consensus       388 aytslf~dsqv~kwn~~~a  406 (635)
T PRK02888        388 AYTTLFLDSQIVKWNIEAA  406 (635)
T ss_pred             EEEeEeecceeEEEehHHH
Confidence            9999999999999998753

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.31  E-value=0.00084  Score=69.26  Aligned_cols=237  Identities=14%  Similarity=0.137  Sum_probs=119.4

Q ss_pred             cEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe-------------------------------------------eEE
Q 004214           32 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK-------------------------------------------CVA   68 (768)
Q Consensus        32 ~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~-------------------------------------------~~~   68 (768)
                      .|+++.|+++..-  |+.|...|.|.||.+...+                                           ++.
T Consensus         3 ~v~~vs~a~~t~E--lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~   80 (395)
T PF08596_consen    3 SVTHVSFAPETLE--LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT   80 (395)
T ss_dssp             -EEEEEEETTTTE--EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred             eEEEEEecCCCce--EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence            5888999997666  8999999999998653211                                           112


Q ss_pred             EecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecce---------eEeeEEecCCCCCccccccccch
Q 004214           69 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE---------MVEAVCAIPPGSAFDSFLSSYNQ  139 (768)
Q Consensus        69 ~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~~~~~~~  139 (768)
                      -++...++|++++.|.-| +++.|..+|.+.|.|++....+..-...+         .+..+.|..-.            
T Consensus        81 l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~------------  147 (395)
T PF08596_consen   81 LLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMT------------  147 (395)
T ss_dssp             EE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE------------
T ss_pred             heeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEe------------
Confidence            233346789999998544 99999999999999999888777644333         11122111000            


Q ss_pred             hhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEee
Q 004214          140 QTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTT  219 (768)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~  219 (768)
                         ...+......                                                    +++++..|.+..|.+
T Consensus       148 ---~~~D~ySSi~----------------------------------------------------L~vGTn~G~v~~fkI  172 (395)
T PF08596_consen  148 ---LGGDGYSSIC----------------------------------------------------LLVGTNSGNVLTFKI  172 (395)
T ss_dssp             ----TTSSSEEEE----------------------------------------------------EEEEETTSEEEEEEE
T ss_pred             ---cCCCcccceE----------------------------------------------------EEEEeCCCCEEEEEE
Confidence               0000011123                                                    345555555555555


Q ss_pred             ccCcccceeeEEEeeecccCCceeEEEEecC--------------------CCCEEEEEeCCCcEEEEECCCceeeeeee
Q 004214          220 VEVPEKKMELILSKRLVGYNEEILDLKFLGE--------------------EEQYLAVATNIEQVQVYDLSSMSCSYVLA  279 (768)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~~l~~~~~~~~i~i~d~~~~~~~~~~~  279 (768)
                      ..................+.++|..+.....                    .-+-+++......++++...+.+......
T Consensus       173 lp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~  252 (395)
T PF08596_consen  173 LPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF  252 (395)
T ss_dssp             EE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-
T ss_pred             ecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee
Confidence            4322222222222222334445554443311                    11234555556899999998877665544


Q ss_pred             CCccceEEEeeeee----cCCCEEEEEEeCCCeEEEEeCCCceEEEeeeccc----CcEEEEEEecCCC
Q 004214          280 GHSEIVLCLDTCAL----SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM----GAVGAVAFSKKLQ  340 (768)
Q Consensus       280 ~~~~~v~~l~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~  340 (768)
                        ...+.|-..++.    ......|++-..+|.|+++.+..-+.+....-+.    ..+...+++++|.
T Consensus       253 --~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd  319 (395)
T PF08596_consen  253 --DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD  319 (395)
T ss_dssp             --SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred             --ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence              333333322232    2345558888999999999999877776655432    2233445566655

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.27  E-value=0.00034  Score=73.17  Aligned_cols=285  Identities=15%  Similarity=0.199  Sum_probs=157.2

Q ss_pred             ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC
Q 004214          237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES  316 (768)
Q Consensus       237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~  316 (768)
                      +.......+......+.+++.|+..|.+++|+...+.....-.+-...+.+..  ..++...++|+|+..|.|.++-++.
T Consensus        30 ~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~--~vs~~e~lvAagt~~g~V~v~ql~~  107 (726)
T KOG3621|consen   30 GFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVR--SVSSVEYLVAAGTASGRVSVFQLNK  107 (726)
T ss_pred             ccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEE--EecchhHhhhhhcCCceEEeehhhc
Confidence            33334444455556888999999999999999887765544332244444443  4455556699999999999998765


Q ss_pred             ceEEE---e---eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214          317 RCCVG---V---GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP  390 (768)
Q Consensus       317 ~~~~~---~---~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  390 (768)
                      +.+..   .   -..|...|++++|++++. .+++|...|.|.+-.++...      .-......+......|..+... 
T Consensus       108 ~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~------~~~~~~q~il~~ds~IVQlD~~-  179 (726)
T KOG3621|consen  108 ELPRDLDYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQ------AFLSKSQEILSEDSEIVQLDYL-  179 (726)
T ss_pred             cCCCcceeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhh------hhccccceeeccCcceEEeecc-
Confidence            32211   1   124788999999999977 69999999999998876410      0111222223344556555544 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCc--eEEEEeccCC-CeEEEEEccC-----CCEEEEeeCCCcEEEEeCC-CCceeEEee
Q 004214          391 NDSLVCTGSQDRTACVWRLPDLV--SVVTFRGHKR-GIWSVEFSPV-----DQVVITASGDKTIKIWSIS-DGSCLKTFE  461 (768)
Q Consensus       391 ~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~-~v~~v~~s~~-----~~~l~t~~~d~~i~iwd~~-~~~~~~~~~  461 (768)
                      ++.+|++...  ...+++.+...  .+..-. ..+ .-...+|-|.     ...|+++ . -..|+|..+ .|..+++..
T Consensus       180 q~~LLVStl~--r~~Lc~tE~eti~QIG~k~-R~~~~~~GACF~~g~~~~q~~~Iyca-R-PG~RlWead~~G~V~~Thq  254 (726)
T KOG3621|consen  180 QSYLLVSTLT--RCILCQTEAETITQIGKKP-RKSLIDFGACFFPGQCKAQKPQIYCA-R-PGLRLWEADFAGEVIKTHQ  254 (726)
T ss_pred             cceehHhhhh--hhheeecchhHHHHhcCCC-cCCccccceEEeeccccCCCceEEEe-c-CCCceEEeecceeEEEeee
Confidence            3333333332  23344443322  221111 111 1223344442     2344443 3 336777654 244444332


Q ss_pred             -------------cCCC----------------cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEE
Q 004214          462 -------------GHTS----------------SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL  512 (768)
Q Consensus       462 -------------~~~~----------------~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l  512 (768)
                                   .+..                ....+.+-. +..+++-+.-| |+|+|..+...+.-.. ....|..+
T Consensus       255 fk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~-~~~vLa~te~G-iyv~d~~~~~v~l~se-~~~DI~dV  331 (726)
T KOG3621|consen  255 FKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLH-SDRVLAWTEVG-IYVFDSNNSQVYLWSE-GGHDILDV  331 (726)
T ss_pred             hhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEee-cceEEEeecce-EEEEEeccceEEEeec-CCCceeEE
Confidence                         0000                111111112 22444444445 8888887766655443 23445444


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCHHHH
Q 004214          513 AVGKKTEMFATGGSDALVNLWHDSTAAER  541 (768)
Q Consensus       513 ~~s~~~~~l~s~~~dg~v~vw~~~~~~~~  541 (768)
                      +  .+|+-|+.-..||.+++..+.+.+..
T Consensus       332 s--~~~neiFvL~~d~~l~~~sv~s~qr~  358 (726)
T KOG3621|consen  332 S--HCGNEIFVLNLDRGLKVESVASRQRK  358 (726)
T ss_pred             e--ecCceEEEEecCCceeEEEeehhHHH
Confidence            4  45666777777888888877765443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.22  E-value=0.0024  Score=66.07  Aligned_cols=297  Identities=17%  Similarity=0.126  Sum_probs=152.8

Q ss_pred             CCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEE-ecCc-------------
Q 004214            8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT-LDKH-------------   73 (768)
Q Consensus         8 ~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~-l~~h-------------   73 (768)
                      ..+.+.|||+.+++......+ ...+....|||+|+.  +|-. .++.|.+++..++...+. ..|-             
T Consensus        21 ~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~--~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvye   96 (353)
T PF00930_consen   21 FKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKY--IAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYE   96 (353)
T ss_dssp             EEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTE--EEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHH
T ss_pred             cceeEEEEecCCCceEECcCC-ccccccceeecCCCe--eEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceecc
Confidence            356789999999985544333 778899999999987  5544 357899999887754422 1220             


Q ss_pred             ---cceeEEEEEcCCCCEEEEEeCC-CeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCc
Q 004214           74 ---FSRVTSMAITSDGSTLISAGRD-KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL  149 (768)
Q Consensus        74 ---~~~V~~l~fs~d~~~L~s~~~d-g~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (768)
                         -+.-..+-|||||++|+....| ..|..+.+........  ....+..+..-..|...                   
T Consensus        97 EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~--~yp~~~~~~YPk~G~~n-------------------  155 (353)
T PF00930_consen   97 EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS--QYPEVESIRYPKAGDPN-------------------  155 (353)
T ss_dssp             HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE--SS-EEEEEE--BTTS---------------------
T ss_pred             ccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc--cCCcccccccCCCCCcC-------------------
Confidence               1123568899999999977643 3343333211100000  00112222221111100                   


Q ss_pred             ceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEec--C-eE--EEEeeccCcc
Q 004214          150 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD--Q-QL--LLYTTVEVPE  224 (768)
Q Consensus       150 ~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--g-~i--~~~~~~~~~~  224 (768)
                              ..-.+.++++.++........     ........-+..+.+.+++..+++...+  + .+  .+++...   
T Consensus       156 --------p~v~l~v~~~~~~~~~~~~~~-----~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t---  219 (353)
T PF00930_consen  156 --------PRVSLFVVDLASGKTTELDPP-----NSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST---  219 (353)
T ss_dssp             ---------EEEEEEEESSSTCCCEE--------HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT---
T ss_pred             --------CceEEEEEECCCCcEEEeeec-----cccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC---
Confidence                    011466678877744311111     0111223556677788887755444322  2 22  2333322   


Q ss_pred             cceeeEEEeeecccCCceeEEEEe-cCCCCEEEEEeCCCc--EEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEE
Q 004214          225 KKMELILSKRLVGYNEEILDLKFL-GEEEQYLAVATNIEQ--VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV  301 (768)
Q Consensus       225 ~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~--i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~  301 (768)
                      ............+.-..-....|. +.+..++.....+|.  |.+++...+... .+....-.|..+. .+...++.+.+
T Consensus       220 g~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~-~~d~~~~~iyf  297 (353)
T PF00930_consen  220 GETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSIL-GWDEDNNRIYF  297 (353)
T ss_dssp             TTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEE-EEECTSSEEEE
T ss_pred             CceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecccc-eEcCCCCEEEE
Confidence            222233333333444444456665 566667666667665  445566666644 4444445554432 25566777677


Q ss_pred             EEeCCC----eEEEEeCC-CceEEEeeecccCcEEEEEEecCCCcEEEEEeC
Q 004214          302 TGSKDN----SVRLWDSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS  348 (768)
Q Consensus       302 ~~~~dg----~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  348 (768)
                      ++..++    .+...++. .+.... +....+.-..+.|+|+++.++.+++.
T Consensus       298 ~a~~~~p~~r~lY~v~~~~~~~~~~-LT~~~~~~~~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  298 TANGDNPGERHLYRVSLDSGGEPKC-LTCEDGDHYSASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             EESSGGTTSBEEEEEETTETTEEEE-SSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred             EecCCCCCceEEEEEEeCCCCCeEe-ccCCCCCceEEEECCCCCEEEEEEcC
Confidence            777633    56666777 554443 33333333789999998866666554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.22  E-value=0.0024  Score=66.87  Aligned_cols=222  Identities=13%  Similarity=0.125  Sum_probs=121.1

Q ss_pred             ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEE-eCCCCCC
Q 004214          284 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW-SFDGLSD  362 (768)
Q Consensus       284 ~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw-d~~~~~~  362 (768)
                      ....+.  +.|.++. ++. ..+|...++.....+....     +.-...+|.+.+  .+++-...++|.++ ++.... 
T Consensus        34 ~p~~ls--~npngr~-v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~~-  101 (443)
T PF04053_consen   34 YPQSLS--HNPNGRF-VLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN--RYAVLESSSTIKIYKNFKNEV-  101 (443)
T ss_dssp             --SEEE--E-TTSSE-EEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE-T-
T ss_pred             CCeeEE--ECCCCCE-EEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCc--cEEEEECCCeEEEEEcCcccc-
Confidence            344554  6677775 444 5588888888555444332     334467788843  47777778899996 332110 


Q ss_pred             CCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC
Q 004214          363 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG  442 (768)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~  442 (768)
                               .. ... .+..+..+-.   |.+|+..+.+ .|.+||..+++.+..+...  +|..+.|+++|++++..+.
T Consensus       102 ---------~k-~i~-~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~  164 (443)
T PF04053_consen  102 ---------VK-SIK-LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK  164 (443)
T ss_dssp             ---------T-------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S
T ss_pred             ---------ce-EEc-CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC
Confidence                     00 000 1112333332   8888887655 8999999999999988743  4899999999999999876


Q ss_pred             CCcEEEEeCCCC-----------ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEE
Q 004214          443 DKTIKIWSISDG-----------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA  511 (768)
Q Consensus       443 d~~i~iwd~~~~-----------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  511 (768)
                       .++.|++....           .....+..-...|.+.+|..+ -++.+.. . .++.  +-.|+.- ++..-..++.=
T Consensus       165 -~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~-~-~lkY--l~~Ge~~-~i~~ld~~~yl  237 (443)
T PF04053_consen  165 -DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTS-N-HLKY--LVNGETG-IIAHLDKPLYL  237 (443)
T ss_dssp             --SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-T-T-EEEE--EETTEEE-EEEE-SS--EE
T ss_pred             -CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcC-C-eEEE--EEcCCcc-eEEEcCCceEE
Confidence             46888775322           033333322567888899876 3444433 3 6766  3445432 22223456777


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCHHHH
Q 004214          512 LAVGKKTEMFATGGSDALVNLWHDSTAAER  541 (768)
Q Consensus       512 l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~  541 (768)
                      +...|..+.+.....|+.+..+.+...+..
T Consensus       238 lgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~  267 (443)
T PF04053_consen  238 LGYLPKENRLYLIDRDGNVISYELDLSELE  267 (443)
T ss_dssp             EEEETTTTEEEEE-TT--EEEEE--HHHHH
T ss_pred             EEEEccCCEEEEEECCCCEEEEEECHHHHH
Confidence            788888889999999999999998876543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.12  E-value=0.0024  Score=66.06  Aligned_cols=305  Identities=12%  Similarity=0.059  Sum_probs=144.5

Q ss_pred             eeCCCccEEEEE-------eCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 004214           39 HPDTDKSLLFSG-------SDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT  111 (768)
Q Consensus        39 spd~~~~~l~sg-------~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~  111 (768)
                      |||+++.++++-       +..+.+.|||+.+++....... ...+....|||+|++++-.. ++.|.+++..++....-
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            577776444332       2346799999999776544433 66789999999999998886 57899999887743322


Q ss_pred             eecc------------------eeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEE---EcCCc
Q 004214          112 VPTY------------------EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMW---NADSA  170 (768)
Q Consensus       112 ~~~~------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iw---d~~~~  170 (768)
                      ....                  ..-..+-|+|++..++.                     +.. .+..+..+   +....
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~---------------------~~~-d~~~v~~~~~~~~~~~  136 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAF---------------------LRF-DEREVPEYPLPDYSPP  136 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEE---------------------EEE-E-TTS-EEEEEEESSS
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEE---------------------EEE-CCcCCceEEeeccCCc
Confidence            1111                  01234455555543211                     000 01111111   10000


Q ss_pred             eeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecC
Q 004214          171 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE  250 (768)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  250 (768)
                      .-                .........+...|...    ..-.+.++++......  .+...........-+..+.|.++
T Consensus       137 ~~----------------~yp~~~~~~YPk~G~~n----p~v~l~v~~~~~~~~~--~~~~~~~~~~~~~yl~~v~W~~d  194 (353)
T PF00930_consen  137 DS----------------QYPEVESIRYPKAGDPN----PRVSLFVVDLASGKTT--ELDPPNSLNPQDYYLTRVGWSPD  194 (353)
T ss_dssp             TE----------------SS-EEEEEE--BTTS-------EEEEEEEESSSTCCC--EE---HHHHTSSEEEEEEEEEET
T ss_pred             cc----------------cCCcccccccCCCCCcC----CceEEEEEECCCCcEE--EeeeccccCCCccCcccceecCC
Confidence            00                00011111111111111    1112344455433221  11111122334556778888865


Q ss_pred             CCCEEEEEeC----CCcEEEEECCCceeeeeeeCC-ccce---EEEeeeee-cCCCEEEEEEeCCCe--EEEEeCCCceE
Q 004214          251 EEQYLAVATN----IEQVQVYDLSSMSCSYVLAGH-SEIV---LCLDTCAL-SSGKILIVTGSKDNS--VRLWDSESRCC  319 (768)
Q Consensus       251 ~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~~~-~~~v---~~l~~~~~-~~~~~~l~~~~~dg~--i~iwd~~~~~~  319 (768)
                      +..+++.-.+    ...+.++|..++.+...+... ...+   ....  +. +++..++.....+|.  |.+++...+..
T Consensus       195 ~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~--~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~  272 (353)
T PF00930_consen  195 GKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPH--FLGPDGNEFLWISERDGYRHLYLYDLDGGKP  272 (353)
T ss_dssp             TEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEE--E-TTTSSEEEEEEETTSSEEEEEEETTSSEE
T ss_pred             CcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccc--cccCCCCEEEEEEEcCCCcEEEEEcccccce
Confidence            5434443332    124566777776554333211 1111   1221  33 566666777778885  44556666664


Q ss_pred             EEeeecccCcE-EEEEEecCCCcEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214          320 VGVGTGHMGAV-GAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC  396 (768)
Q Consensus       320 ~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  396 (768)
                      . .+....-.| ..+.++++++.+.+++..++  .-.+|.+...        .......+......-..+.|||++++++
T Consensus       273 ~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~--------~~~~~~~LT~~~~~~~~~~~Spdg~y~v  343 (353)
T PF00930_consen  273 R-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD--------SGGEPKCLTCEDGDHYSASFSPDGKYYV  343 (353)
T ss_dssp             E-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT--------ETTEEEESSTTSSTTEEEEE-TTSSEEE
T ss_pred             e-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC--------CCCCeEeccCCCCCceEEEECCCCCEEE
Confidence            4 444445556 44778888777777777633  3444444321        0112222222222226899999999887


Q ss_pred             EEeC
Q 004214          397 TGSQ  400 (768)
Q Consensus       397 ~~~~  400 (768)
                      ....
T Consensus       344 ~~~s  347 (353)
T PF00930_consen  344 DTYS  347 (353)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            6543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.10  E-value=0.0056  Score=63.50  Aligned_cols=77  Identities=9%  Similarity=0.157  Sum_probs=65.0

Q ss_pred             eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214          376 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG  454 (768)
Q Consensus       376 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~  454 (768)
                      .......+.+++++|+...++.|+.||.|.+||...+...  +....-..+.++|+|+|.++++|+.-|.+.+||+.-.
T Consensus       255 sipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  255 SIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            3457788999999999999999999999999998766333  2234566789999999999999999999999998543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.09  E-value=0.0041  Score=69.55  Aligned_cols=240  Identities=13%  Similarity=0.151  Sum_probs=130.1

Q ss_pred             cceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEE
Q 004214           74 FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF  153 (768)
Q Consensus        74 ~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (768)
                      ...|.++.|..++.-++.+..+|.|.+-|.++......-.....|.+++|+|++.                       .+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee-----------------------~l  124 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEE-----------------------LL  124 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCc-----------------------EE
Confidence            3579999999999999999999999999999887777667778899999999987                       44


Q ss_pred             EEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEe
Q 004214          154 ITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK  233 (768)
Q Consensus       154 ~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~  233 (768)
                      +..+..+++.+-.-.-.-+..... .     ..+.           + .+..+.++-...-.-+....+...........
T Consensus       125 ~liT~~~tll~mT~~f~~i~E~~L-~-----~d~~-----------~-~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e  186 (1265)
T KOG1920|consen  125 ALITGRQTLLFMTKDFEPIAEKPL-D-----ADDE-----------R-KSKFVNVGWGRKETQFRGSEGRQAARQKIEKE  186 (1265)
T ss_pred             EEEeCCcEEEEEeccccchhcccc-c-----cccc-----------c-ccccceecccccceeeecchhhhccccccccc
Confidence            444444444443221110100000 0     0000           0 01111111111111111111110000111111


Q ss_pred             eec---ccCCceeEEEEecCCCCEEEE-----EeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEE--
Q 004214          234 RLV---GYNEEILDLKFLGEEEQYLAV-----ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG--  303 (768)
Q Consensus       234 ~~~---~~~~~i~~~~~~~~~~~~l~~-----~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~--  303 (768)
                      ...   ...+.-+++.|-. +++++|+     .+....|++||.+ +..-..-......-.+++  |-|.|.. +++-  
T Consensus       187 k~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~Ls--WkPsgs~-iA~iq~  261 (1265)
T KOG1920|consen  187 KALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLS--WKPSGSL-IAAIQC  261 (1265)
T ss_pred             ccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCccccccccee--ecCCCCe-Eeeeee
Confidence            111   1233345677764 6778887     3334799999987 433322222223334554  5566654 5554  


Q ss_pred             -eCCCeEEEEeCCC---ceEEEeeecccCcEEEEEEecCCCcEEEE---EeCCCeEEEEeCCCC
Q 004214          304 -SKDNSVRLWDSES---RCCVGVGTGHMGAVGAVAFSKKLQNFLVS---GSSDHTIKVWSFDGL  360 (768)
Q Consensus       304 -~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~s---~~~dg~i~iwd~~~~  360 (768)
                       ++|+.|.+|.-+.   +.....+.....++..++|+.++. +|++   ......|++|-+.+.
T Consensus       262 ~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  262 KTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             cCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCe
Confidence             3456788887543   222222333445589999999866 5665   444555999987653

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.08  E-value=0.0037  Score=64.54  Aligned_cols=194  Identities=14%  Similarity=0.117  Sum_probs=105.9

Q ss_pred             ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee--C------CccceEEEeeeeec--CCC---EEEEEE
Q 004214          237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA--G------HSEIVLCLDTCALS--SGK---ILIVTG  303 (768)
Q Consensus       237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~------~~~~v~~l~~~~~~--~~~---~~l~~~  303 (768)
                      ...++|+.++.+  +-.++|+|..+|.+.|.|++....+..-.  .      ....++++.|....  .+.   .++++|
T Consensus        84 ~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   84 AKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             --S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             ccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            346788999886  66699999999999999998887766521  1      23456677644322  222   568999


Q ss_pred             eCCCeEEEEeCC--C-ceE----EEeeecccCcEEEEE-EecCCC-------------------cEEEEEeCCCeEEEEe
Q 004214          304 SKDNSVRLWDSE--S-RCC----VGVGTGHMGAVGAVA-FSKKLQ-------------------NFLVSGSSDHTIKVWS  356 (768)
Q Consensus       304 ~~dg~i~iwd~~--~-~~~----~~~~~~~~~~v~~~~-~~~~~~-------------------~~l~s~~~dg~i~iwd  356 (768)
                      +..|.+.+|.+.  . +..    ......+.++|..+. ++.+..                   +-++....+..++++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            999999999764  1 221    112224556666555 322210                   1244445567899998


Q ss_pred             CCCCCCCCccccccceeeEeeccCCCeEEEEE-----ccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC----CCeEE
Q 004214          357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV-----APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK----RGIWS  427 (768)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~v~~  427 (768)
                      .....          .............++.+     ...+..|++-..+|.+++|.++..+.+..+.-..    ..+..
T Consensus       242 ~~~~k----------~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~  311 (395)
T PF08596_consen  242 PPKSK----------GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS  311 (395)
T ss_dssp             TT-------------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred             CCCCc----------ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence            76431          11111111112233344     2356778888999999999999999988877532    23445


Q ss_pred             EEEccCCCEEEEeeC
Q 004214          428 VEFSPVDQVVITASG  442 (768)
Q Consensus       428 v~~s~~~~~l~t~~~  442 (768)
                      ..++++|..++-.+.
T Consensus       312 ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  312 SSISRNGDIFYWTGP  326 (395)
T ss_dssp             -EE-TTS-EEEE-SS
T ss_pred             cEECCCCCEEEEeCc
Confidence            666777776655543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=0.013  Score=61.18  Aligned_cols=261  Identities=16%  Similarity=0.098  Sum_probs=162.9

Q ss_pred             EEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEE
Q 004214          264 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL  343 (768)
Q Consensus       264 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  343 (768)
                      +.+++..+......+..+..+ ..+.  ..+.+..+.++-.....+...+............-...-..+++++.+....
T Consensus        13 ~~v~~~~~~~~~~~~~~~~~~-~~v~--~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vy   89 (381)
T COG3391          13 VSVINTGTNKVTAAISLGRGP-GGVA--VNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVY   89 (381)
T ss_pred             eEEEeecccEEEEEeecCCCC-ceeE--EcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEE
Confidence            444554444444343333322 2222  4455544344443333555555552222221121113345778888888777


Q ss_pred             EEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCCCceEEEEec
Q 004214          344 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ---DRTACVWRLPDLVSVVTFRG  420 (768)
Q Consensus       344 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~  420 (768)
                      ++...++.|.+.|.....          .... ..-......++++|+++.+.++..   ++++.+.|..+.+.+.....
T Consensus        90 v~~~~~~~v~vid~~~~~----------~~~~-~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v  158 (381)
T COG3391          90 VTTGDSNTVSVIDTATNT----------VLGS-IPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV  158 (381)
T ss_pred             EecCCCCeEEEEcCcccc----------eeeE-eeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec
Confidence            777778999999955321          1111 111225678999999988777766   68899999999988887554


Q ss_pred             cCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCceeE-E---eecCCCcEEEEEEEeCCCEEEEEeCC---CcEEEEE
Q 004214          421 HKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSCLK-T---FEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWT  492 (768)
Q Consensus       421 ~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd  492 (768)
                      -..+ ..++++|+|+.++.+. .++.|.+.|.......+ .   ...-......+.++|+|+++.+....   +.+...|
T Consensus       159 G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id  237 (381)
T COG3391         159 GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKID  237 (381)
T ss_pred             CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEe
Confidence            4345 8999999999666554 78999999976655543 1   01122334568899999977665543   5899999


Q ss_pred             CCCCeEEEEeccCCC-cEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCHH
Q 004214          493 VRTGECIATYDKHED-KIWALAVGKKTEMFATGGS-DALVNLWHDSTAA  539 (768)
Q Consensus       493 ~~~~~~~~~~~~~~~-~v~~l~~s~~~~~l~s~~~-dg~v~vw~~~~~~  539 (768)
                      ..++.....-..-.. ....+.++|+|..+.+... .+.+.+-+..+..
T Consensus       238 ~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         238 TATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             CCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence            998887776221222 4556889999999888744 4777877766543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.06  E-value=0.0038  Score=59.60  Aligned_cols=199  Identities=12%  Similarity=0.193  Sum_probs=116.5

Q ss_pred             eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC
Q 004214          323 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR  402 (768)
Q Consensus       323 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  402 (768)
                      +.+-...+..++|+|+.+.++++....+.|.-++..+.         . ..........+.-.+++..++.++++.-.++
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~---------v-lr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~   86 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGK---------V-LRRIPLDGFGDYEGITYLGNGRYVLSEERDQ   86 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----------E-EEEEE-SS-SSEEEEEE-STTEEEEEETTTT
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCC---------E-EEEEeCCCCCCceeEEEECCCEEEEEEcCCC
Confidence            34555669999999998878888888898888876521         1 1111122246788999988887777766789


Q ss_pred             cEEEEeCCCCc------eEEEEe-----ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC---CceeEEe--------
Q 004214          403 TACVWRLPDLV------SVVTFR-----GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD---GSCLKTF--------  460 (768)
Q Consensus       403 ~i~i~d~~~~~------~~~~~~-----~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~---~~~~~~~--------  460 (768)
                      .+.++++....      ....+.     .++..+..++|+|.++.|+.+-+..-..||.+..   ...+...        
T Consensus        87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~  166 (248)
T PF06977_consen   87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD  166 (248)
T ss_dssp             EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred             cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccc
Confidence            99999884321      111121     2456789999999988888887777777777653   2222111        


Q ss_pred             ecCCCcEEEEEEEeCC-CEEEEEeCCCcEEEEECCCCeEEEEeccCC---------CcEEEEEEcCCCCEEEEEeCCCcE
Q 004214          461 EGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRTGECIATYDKHE---------DKIWALAVGKKTEMFATGGSDALV  530 (768)
Q Consensus       461 ~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~l~~s~~~~~l~s~~~dg~v  530 (768)
                      ......+..+.+.|.. ++++.+..+..|..+| .+|+.+..+.-..         ...-.|+|.++|+..++. +-+..
T Consensus       167 ~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlf  244 (248)
T PF06977_consen  167 KLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLF  244 (248)
T ss_dssp             T--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEE
T ss_pred             cceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceE
Confidence            1233457888998864 5667777788999999 7888777664222         235689999999655554 55554


Q ss_pred             EEE
Q 004214          531 NLW  533 (768)
Q Consensus       531 ~vw  533 (768)
                      +++
T Consensus       245 y~f  247 (248)
T PF06977_consen  245 YRF  247 (248)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.05  E-value=0.005  Score=62.86  Aligned_cols=219  Identities=14%  Similarity=0.154  Sum_probs=126.4

Q ss_pred             CeEEEEeCCCceEEEeeecc-cCcEEEEEE---ecC---CCcEEEEEeC----------CCeEEEEeCCCCCCCCccccc
Q 004214          307 NSVRLWDSESRCCVGVGTGH-MGAVGAVAF---SKK---LQNFLVSGSS----------DHTIKVWSFDGLSDDAEQPMN  369 (768)
Q Consensus       307 g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~---~~~---~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~  369 (768)
                      +.|++.|..+.+.+..+.-. ...+.+++.   ..+   ...+++.|+.          .|.|.++++....   .....
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~---~~~~~   78 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP---ENNFK   78 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--------E
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccc---ccceE
Confidence            35788888777766655432 223444333   322   1457777754          2889999988530   00011


Q ss_pred             cceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eEEEEe-ccCCCeEEEEEccCCCEEEEeeCCCcEE
Q 004214          370 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-SVVTFR-GHKRGIWSVEFSPVDQVVITASGDKTIK  447 (768)
Q Consensus       370 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~-~~~~~v~~v~~s~~~~~l~t~~~d~~i~  447 (768)
                      .+.. ......++|++++-- ++. |+++. ++.|.+|++...+ ....-. .....++++...  ++++++|.....+.
T Consensus        79 l~~i-~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~  152 (321)
T PF03178_consen   79 LKLI-HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVS  152 (321)
T ss_dssp             EEEE-EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEE
T ss_pred             EEEE-EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEE
Confidence            1122 223456788888866 444 44433 4789999998777 333222 122345555544  77999999888888


Q ss_pred             EEeCCC-CceeEEee--cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC-------Ce----EEEEeccCCCcEEEE-
Q 004214          448 IWSISD-GSCLKTFE--GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT-------GE----CIATYDKHEDKIWAL-  512 (768)
Q Consensus       448 iwd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-------~~----~~~~~~~~~~~v~~l-  512 (768)
                      ++..+. +..+..+.  .....++++.|.++++.++.++.+|.+.++....       +.    .+..+. ....|+++ 
T Consensus       153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~  231 (321)
T PF03178_consen  153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFR  231 (321)
T ss_dssp             EEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEE
T ss_pred             EEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEE
Confidence            885543 33233332  2456789999997778999999999999998752       22    233343 45667777 


Q ss_pred             --EEcCC--C------CEEEEEeCCCcEEEEEc
Q 004214          513 --AVGKK--T------EMFATGGSDALVNLWHD  535 (768)
Q Consensus       513 --~~s~~--~------~~l~s~~~dg~v~vw~~  535 (768)
                        .+.|.  +      ..++-++.+|.|.+.-.
T Consensus       232 ~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p  264 (321)
T PF03178_consen  232 RGSLIPRSGSSESPNRPQILYGTVDGSIGVLIP  264 (321)
T ss_dssp             E--SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred             EEEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence              54552  2      24888889999885544

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.04  E-value=0.0052  Score=58.70  Aligned_cols=209  Identities=9%  Similarity=0.134  Sum_probs=117.9

Q ss_pred             eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecc-cCcEEEEEEecCCCcEEEEEeCCCeEEEE
Q 004214          277 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVGAVAFSKKLQNFLVSGSSDHTIKVW  355 (768)
Q Consensus       277 ~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~dg~i~iw  355 (768)
                      .+.+-...+..++  +.++++.++++....+.|..++.. |+.++.+.-. .+..-.+++..++. ++++.-.++.+.++
T Consensus        16 ~l~g~~~e~SGLT--y~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~~L~~~   91 (248)
T PF06977_consen   16 PLPGILDELSGLT--YNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGR-YVLSEERDQRLYIF   91 (248)
T ss_dssp             E-TT--S-EEEEE--EETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTE-EEEEETTTTEEEEE
T ss_pred             ECCCccCCccccE--EcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCE-EEEEEcCCCcEEEE
Confidence            4555566688998  888888888889999999999975 6777766533 35678888877643 55555568999999


Q ss_pred             eCCCCCCCCcccc-ccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC---CceEEEE--e------ccCC
Q 004214          356 SFDGLSDDAEQPM-NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD---LVSVVTF--R------GHKR  423 (768)
Q Consensus       356 d~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~--~------~~~~  423 (768)
                      ++........... ..........++..+-.++|+|.++.|+++-...-..+|.+..   ...+...  .      ....
T Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred             EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence            8854322111100 0001111123556789999999887777777776677776643   2121111  1      1334


Q ss_pred             CeEEEEEccC-CCEEEEeeCCCcEEEEeCCCCceeEEeecCC---------CcEEEEEEEeCCCEEEEEeCCCcEEEE
Q 004214          424 GIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTFEGHT---------SSVLRASFLTRGAQIVSCGADGLVKLW  491 (768)
Q Consensus       424 ~v~~v~~s~~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~s~~~dg~i~iw  491 (768)
                      .+.++.++|. +++++.+..+..|..+| .+|+.+..+.-..         ...-.++|.++|+..++ ++-+..++|
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            5788999996 56777788889999999 6788776655222         24678999999855444 455555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.03  E-value=1.6e-06  Score=88.61  Aligned_cols=197  Identities=19%  Similarity=0.245  Sum_probs=129.8

Q ss_pred             cEEEEEEecCC-CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEe----CCC
Q 004214          329 AVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGS----QDR  402 (768)
Q Consensus       329 ~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~----~dg  402 (768)
                      .+.|+++.-+. +.++++|..+|.|.+-.++.....        ......++..+.++++|++ |.+.||+|-    .|.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds  129 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDS  129 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccc--------cceecccccccccccccccccHHHHHhhhhhhcccC
Confidence            34555554333 357888999999999888754221        2344566778899999999 566777764    355


Q ss_pred             cEEEEeCCCC--ceE--EEEec-cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc-eeEEeecCCCcEEEEEEEe-C
Q 004214          403 TACVWRLPDL--VSV--VTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS-CLKTFEGHTSSVLRASFLT-R  475 (768)
Q Consensus       403 ~i~i~d~~~~--~~~--~~~~~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~-~  475 (768)
                      .+.|||+.++  .+.  ..+.+ ......+++|-.+.+++.+|...+.++++|++... ....+  .+..+..+...| .
T Consensus       130 ~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~  207 (783)
T KOG1008|consen  130 SLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFS  207 (783)
T ss_pred             CccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCC
Confidence            7999999876  221  12222 34456689999999999999999999999997321 11111  334555677778 6


Q ss_pred             CCEEEEEeCCCcEEEEE-CCCCe-EEEEeccC----CCcEEEEEEcCCCC-EEEEEeC-CCcEEEEEcC
Q 004214          476 GAQIVSCGADGLVKLWT-VRTGE-CIATYDKH----EDKIWALAVGKKTE-MFATGGS-DALVNLWHDS  536 (768)
Q Consensus       476 ~~~l~s~~~dg~i~iwd-~~~~~-~~~~~~~~----~~~v~~l~~s~~~~-~l~s~~~-dg~v~vw~~~  536 (768)
                      ++|+++.. ||.|.+|| ..+-+ ++..+...    ...+..++|+|... .+++.+. .++|+++++.
T Consensus       208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            77887766 99999999 43332 22222211    22489999999643 4555554 4568888764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.02  E-value=0.00017  Score=76.44  Aligned_cols=265  Identities=11%  Similarity=0.104  Sum_probs=147.0

Q ss_pred             CCCCEEEEEeC----CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec
Q 004214          250 EEEQYLAVATN----IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG  325 (768)
Q Consensus       250 ~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  325 (768)
                      |..+++++++-    .|.|.||- .+|++.+-.   +.++.....||.| ...+|+.|-.-|.+.+|...+.+.-.....
T Consensus        25 PsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V---t~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv~~t   99 (1416)
T KOG3617|consen   25 PSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV---TYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTVVET   99 (1416)
T ss_pred             CCCceeEEEEecCCCCceEEEEe-cCCCCCccc---ccceehhhhccCh-HHHHHhhccccceeEEEecCCceeeeeccC
Confidence            56677777653    57787774 333322211   1222222233554 445589999999999999999888888889


Q ss_pred             ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCC--eEEEEEccCCC------EEEE
Q 004214          326 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD--INSLAVAPNDS------LVCT  397 (768)
Q Consensus       326 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~~~------~l~~  397 (768)
                      |+.+|..+.|+++|. .++++..-|.|.+|...........+.-.      ..-...  ..|...++++.      ..++
T Consensus       100 h~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d~~g~~q~~~~~~------hel~~~ltl~cfRL~~~~Ee~~~laKaaV  172 (1416)
T KOG3617|consen  100 HPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYDVIGEIQTSNIMQ------HELNDQLTLWCFRLSYDREEKFKLAKAAV  172 (1416)
T ss_pred             CCCCceeEEecCCCC-eEEEcCCCceeEEEEeeeccccccchhhh------hHhhceeeEEEEecCCChHHhhhhhhhhc
Confidence            999999999999977 79999999999999887432211111000      001122  23445555532      2333


Q ss_pred             EeCCCcEE-EEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC
Q 004214          398 GSQDRTAC-VWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG  476 (768)
Q Consensus       398 ~~~dg~i~-i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  476 (768)
                      .+.+..+- .++.+....-.... |.       =.|+|..++.++.+|+|+-.|- .|++....+..+.  ..+-|.+..
T Consensus       173 tgDe~alD~~fnwk~~~a~rs~~-ks-------gv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~--vQmLf~~~~  241 (1416)
T KOG3617|consen  173 TGDESALDEPFNWKESLAERSDE-KS-------GVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE--VQMLFMGYC  241 (1416)
T ss_pred             cCchhhhcccccCccchhhcccc-cc-------CCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch--HHHHHhccc
Confidence            34443332 33322111111111 11       1467888888899999988874 4554443331111  111122211


Q ss_pred             CEEEEEeCCCcEEEEEC-C----------------------------CC----eEEEEeccCCCcEEEEEEcCCCCEEEE
Q 004214          477 AQIVSCGADGLVKLWTV-R----------------------------TG----ECIATYDKHEDKIWALAVGKKTEMFAT  523 (768)
Q Consensus       477 ~~l~s~~~dg~i~iwd~-~----------------------------~~----~~~~~~~~~~~~v~~l~~s~~~~~l~s  523 (768)
                      .-++..-.+-.+.++-+ .                            +|    .....+ .....+++++++..+..|.+
T Consensus       242 eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~-e~ge~~~c~cY~~~~~~l~a  320 (1416)
T KOG3617|consen  242 EAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGL-ELGEGILCMCYGEKEIRLWA  320 (1416)
T ss_pred             ceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhh-hcCCceEEEEEeccceEEEe
Confidence            11111111111111110 0                            01    000011 13456899999999999999


Q ss_pred             EeCCCcEEEEEcCCH
Q 004214          524 GGSDALVNLWHDSTA  538 (768)
Q Consensus       524 ~~~dg~v~vw~~~~~  538 (768)
                      |...|.+.+|.....
T Consensus       321 gt~~gnv~~w~~v~~  335 (1416)
T KOG3617|consen  321 GTKEGNVTIWLDVNK  335 (1416)
T ss_pred             cccCCcEEEeeecCc
Confidence            999999999986543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.01  E-value=0.024  Score=61.62  Aligned_cols=62  Identities=13%  Similarity=0.064  Sum_probs=44.0

Q ss_pred             CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC
Q 004214          401 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH  463 (768)
Q Consensus       401 dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~  463 (768)
                      -|.+.-+|+.+++.............+. +.-.+.+++.++.||.++.+|.++|+.+..++-.
T Consensus       440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       440 MGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             ceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            3678889999998887665322212222 1224567778888999999999999999888743

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.00  E-value=0.031  Score=58.69  Aligned_cols=214  Identities=12%  Similarity=0.058  Sum_probs=109.5

Q ss_pred             cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce------EEEeeecccCcEEEEEEe
Q 004214          263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC------CVGVGTGHMGAVGAVAFS  336 (768)
Q Consensus       263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~  336 (768)
                      .|.+|+...... ..+.-..+.+.++.  |.. +.. |+.-..||.+++||+....      .+....-....+....+.
T Consensus        62 ~I~iys~sG~ll-~~i~w~~~~iv~~~--wt~-~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~  136 (410)
T PF04841_consen   62 SIQIYSSSGKLL-SSIPWDSGRIVGMG--WTD-DEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFY  136 (410)
T ss_pred             EEEEECCCCCEe-EEEEECCCCEEEEE--ECC-CCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccC
Confidence            377777655443 33333337787875  444 555 6677799999999987443      011111111112222233


Q ss_pred             cCCCcEEEEEeCCCeEEEEeCCCCCCCCc-cccccceeeEe--eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 004214          337 KKLQNFLVSGSSDHTIKVWSFDGLSDDAE-QPMNLKAKAVV--AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV  413 (768)
Q Consensus       337 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  413 (768)
                      ..|   ++.-..++.+.+.  ........ ......+....  ..+........++.+....+....++.+.+.+-...+
T Consensus       137 ~~G---ivvLt~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~  211 (410)
T PF04841_consen  137 KNG---IVVLTGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK  211 (410)
T ss_pred             CCC---EEEECCCCeEEEE--eCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc
Confidence            232   3333344444333  22211100 00000000000  0011111112344455555555556666644433221


Q ss_pred             eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC-CCcEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214          414 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH-TSSVLRASFLTRGAQIVSCGADGLVKLWT  492 (768)
Q Consensus       414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  492 (768)
                      .   +. ..+++..+++||+++++|.-..+|.+.+.+..-.+.+..+... ......+.|..+...++.-  ...|.+..
T Consensus       212 ~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg  285 (410)
T PF04841_consen  212 Q---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG  285 (410)
T ss_pred             c---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence            1   21 2468999999999999999999999999987766777666643 3456678887664333332  33455554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.95  E-value=0.001  Score=69.31  Aligned_cols=181  Identities=16%  Similarity=0.102  Sum_probs=108.3

Q ss_pred             eecCCCEEEEEEe--CC-CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccc
Q 004214          292 ALSSGKILIVTGS--KD-NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM  368 (768)
Q Consensus       292 ~~~~~~~~l~~~~--~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  368 (768)
                      +.+++..+....-  .. ..+.++++.++....... ..+.-..-.|+|+|+.++++...||...+|-++.....     
T Consensus       200 ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-----  273 (425)
T COG0823         200 WSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-----  273 (425)
T ss_pred             cCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-----
Confidence            5555555333322  22 458999998876554443 23334456899999999999999988776655432111     


Q ss_pred             ccceeeEeeccCCCeEEEEEccCCCEEEEEeCC-C--cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCC-C
Q 004214          369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-R--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD-K  444 (768)
Q Consensus       369 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d-~  444 (768)
                          ...+......-+.=.|+|||+.++..+.. |  .|.+++.+.... ..+......-..-.|+|||++++..+.. |
T Consensus       274 ----~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g  348 (425)
T COG0823         274 ----LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGG  348 (425)
T ss_pred             ----ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCC
Confidence                11111112222256789999998877643 3  477777766654 3333333333377899999998877643 4


Q ss_pred             c--EEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeC
Q 004214          445 T--IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA  484 (768)
Q Consensus       445 ~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  484 (768)
                      .  |.+.|+.++...+.+. +......-.|.++|+.+...+.
T Consensus       349 ~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         349 QWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             ceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence            4  6777776665444443 3334445667788877655443

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.94  E-value=0.00017  Score=75.30  Aligned_cols=153  Identities=10%  Similarity=0.141  Sum_probs=98.7

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeCCCceEEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccc
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL  370 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  370 (768)
                      ....++. ++.|+.-|.+++|+-..+.....-. +-.+.+..++++++ ..+++.|+..|.|.++-+........    .
T Consensus        41 ~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~p~~~----~  114 (726)
T KOG3621|consen   41 VDATEEY-LAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKELPRDL----D  114 (726)
T ss_pred             eecCCce-EEEecccceEEEEecCchhhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccCCCcc----e
Confidence            3355555 9999999999999987776544332 34455556667776 55889999999999998876322111    1


Q ss_pred             ceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcE
Q 004214          371 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL----VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI  446 (768)
Q Consensus       371 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i  446 (768)
                      .....-..|...|++++|++++..+++|...|.|..-.+.+.    .....+......|-.+.+.. +.+|++...  .-
T Consensus       115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~~LLVStl~--r~  191 (726)
T KOG3621|consen  115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-SYLLVSTLT--RC  191 (726)
T ss_pred             eeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc-ceehHhhhh--hh
Confidence            111112337889999999999999999999999999888762    11222233455666666653 333333332  23


Q ss_pred             EEEeCCC
Q 004214          447 KIWSISD  453 (768)
Q Consensus       447 ~iwd~~~  453 (768)
                      .+++.+.
T Consensus       192 ~Lc~tE~  198 (726)
T KOG3621|consen  192 ILCQTEA  198 (726)
T ss_pred             heeecch
Confidence            3455543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.94  E-value=0.00086  Score=70.16  Aligned_cols=146  Identities=16%  Similarity=0.110  Sum_probs=86.8

Q ss_pred             ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCcee
Q 004214          378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL  457 (768)
Q Consensus       378 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~  457 (768)
                      .....+..+.++|+|+++++ +.||.-.+|.....+...     .+.-..++|.+.++ +|+-...++|.|+.--+....
T Consensus        30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~  102 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVV  102 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT
T ss_pred             CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccc
Confidence            34556789999999999999 557888888854444332     23345688998554 666666889999743233333


Q ss_pred             EEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          458 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       458 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      ..+... ..+..+-.   |..|+..+.+ .|.+||+.+++.+.++...  +|..+.|+++|++++..+.+ .+.+++.+.
T Consensus       103 k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~  174 (443)
T PF04053_consen  103 KSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNL  174 (443)
T ss_dssp             -----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred             eEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence            344322 23433332   8877777654 7999999999999999733  48999999999999998866 578887665


Q ss_pred             H
Q 004214          538 A  538 (768)
Q Consensus       538 ~  538 (768)
                      .
T Consensus       175 ~  175 (443)
T PF04053_consen  175 E  175 (443)
T ss_dssp             H
T ss_pred             h
Confidence            4

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.92  E-value=0.013  Score=63.55  Aligned_cols=285  Identities=11%  Similarity=0.097  Sum_probs=160.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCceeeeeeeCCc-cceEEEeee-e-----ecCCCEEEEEEeCCCeEEEEeCCCceEEEeee
Q 004214          252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHS-EIVLCLDTC-A-----LSSGKILIVTGSKDNSVRLWDSESRCCVGVGT  324 (768)
Q Consensus       252 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~-~-----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  324 (768)
                      +..+++++.++.|+-+|..+++.+..+.... ..+.....| .     .-.++. ++.++.|+.+.-.|..+|+.+....
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~-v~v~t~dg~l~ALDa~TGk~~W~~~  147 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGK-VFFGTLDARLVALDAKTGKVVWSKK  147 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCE-EEEEcCCCEEEEEECCCCCEEeecc
Confidence            3477777778899999999998887654321 111110000 0     011234 6778889999999999999887654


Q ss_pred             cc--c--CcEEE-EEEecCCCcEEEEEeC------CCeEEEEeCCCCCCCCccccccc---------------e------
Q 004214          325 GH--M--GAVGA-VAFSKKLQNFLVSGSS------DHTIKVWSFDGLSDDAEQPMNLK---------------A------  372 (768)
Q Consensus       325 ~~--~--~~v~~-~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~---------------~------  372 (768)
                      ..  .  ..+++ -.+. + . .++.+..      +|.|..+|..++...-.......               .      
T Consensus       148 ~~~~~~~~~~tssP~v~-~-g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~  224 (527)
T TIGR03075       148 NGDYKAGYTITAAPLVV-K-G-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP  224 (527)
T ss_pred             cccccccccccCCcEEE-C-C-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence            21  1  11111 1111 2 2 3444432      67888888776532211000000               0      


Q ss_pred             -eeEeeccCCCeEEEEEccCCCEEEEEeCC-----C-----------cEEEEeCCCCceEEEEeccCCCeE---------
Q 004214          373 -KAVVAAHGKDINSLAVAPNDSLVCTGSQD-----R-----------TACVWRLPDLVSVVTFRGHKRGIW---------  426 (768)
Q Consensus       373 -~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~~v~---------  426 (768)
                       .....+....=..++++|...++..+..+     +           .|.-.|+++++..-.++.....++         
T Consensus       225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~  304 (527)
T TIGR03075       225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI  304 (527)
T ss_pred             CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence             00000111112245777777777776632     2           577778899998888775333222         


Q ss_pred             EEEEccCCC---EEEEeeCCCcEEEEeCCCCceeEE--------ee---c-CC-CcE-----------------------
Q 004214          427 SVEFSPVDQ---VVITASGDKTIKIWSISDGSCLKT--------FE---G-HT-SSV-----------------------  467 (768)
Q Consensus       427 ~v~~s~~~~---~l~t~~~d~~i~iwd~~~~~~~~~--------~~---~-~~-~~v-----------------------  467 (768)
                      -+.+..+|+   .++.+..+|.+.+.|-.+|+++..        +.   . .. .++                       
T Consensus       305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~  384 (527)
T TIGR03075       305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFL  384 (527)
T ss_pred             EEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCc
Confidence            223334665   788999999999999999988622        10   0 00 000                       


Q ss_pred             -----EEEEEEeCCCEEEEEeC---------------------------------CCcEEEEECCCCeEEEEeccCCCcE
Q 004214          468 -----LRASFLTRGAQIVSCGA---------------------------------DGLVKLWTVRTGECIATYDKHEDKI  509 (768)
Q Consensus       468 -----~~~~~s~~~~~l~s~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~~v  509 (768)
                           ..++++|+..+++....                                 -|.|.-+|+.+|+............
T Consensus       385 Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~  464 (527)
T TIGR03075       385 GGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLW  464 (527)
T ss_pred             CCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCC
Confidence                 01344444444433222                                 2457788888888877665322111


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHH
Q 004214          510 WALAVGKKTEMFATGGSDALVNLWHDSTAAER  541 (768)
Q Consensus       510 ~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~  541 (768)
                      .+. +.-.+..++.++.||.++.+|..|++..
T Consensus       465 ~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~l  495 (527)
T TIGR03075       465 GGV-LATAGDLVFYGTLEGYFKAFDAKTGEEL  495 (527)
T ss_pred             Ccc-eEECCcEEEEECCCCeEEEEECCCCCEe
Confidence            121 1224557777888999999999998654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=0.019  Score=59.94  Aligned_cols=213  Identities=16%  Similarity=0.153  Sum_probs=144.0

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEe--CCCeEEEEeCCCCCCCCccccc
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFDGLSDDAEQPMN  369 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~  369 (768)
                      ..+.+....+....++.|.+.|..+.........-. ....++++|+++.+.++-.  .++++.+.|-....        
T Consensus        81 v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~--------  151 (381)
T COG3391          81 VNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK--------  151 (381)
T ss_pred             eCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe--------
Confidence            666777667777778999999987776666544322 5578899999876666666  36888888766432        


Q ss_pred             cceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceEE-E---EeccCCCeEEEEEccCCCEEEEeeCC-
Q 004214          370 LKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVV-T---FRGHKRGIWSVEFSPVDQVVITASGD-  443 (768)
Q Consensus       370 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~---~~~~~~~v~~v~~s~~~~~l~t~~~d-  443 (768)
                        .......-..+ ..++++|+|..+.+.. .++.|.++|........ .   ...-......+.++|+|..+.+.... 
T Consensus       152 --~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~  228 (381)
T COG3391         152 --VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS  228 (381)
T ss_pred             --EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccC
Confidence              22222211223 8899999999666655 78899999977665543 1   11122344678999999977666544 


Q ss_pred             --CcEEEEeCCCCceeEEeecCCC-cEEEEEEEeCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCCC---cEEEEEEcC
Q 004214          444 --KTIKIWSISDGSCLKTFEGHTS-SVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYDKHED---KIWALAVGK  516 (768)
Q Consensus       444 --~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~---~v~~l~~s~  516 (768)
                        +.+...|..++.....-..-.. ....+.++|+|+++.+... .+.+.+.|..+......+.....   .+..+++.+
T Consensus       229 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~  308 (381)
T COG3391         229 GSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP  308 (381)
T ss_pred             CCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence              5899999988877765221112 4566899999999988755 47899999998887777654332   344555544

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.91  E-value=0.043  Score=57.21  Aligned_cols=152  Identities=9%  Similarity=0.075  Sum_probs=99.9

Q ss_pred             ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeE-
Q 004214          420 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC-  498 (768)
Q Consensus       420 ~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-  498 (768)
                      .....|.+++++|+...++.|+.||+|.+||...+...  +....-.++.++|+|+|..+++|+..|.+.+||+.-+.. 
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~  334 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK  334 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence            36778999999999999999999999999998766433  223456678899999999999999999999999853211 


Q ss_pred             ------------EE---EeccCCCcEEEEEEcCCCC-------------EEEEEeCCCcEEEEEcCCHHHHHHHHHHHHH
Q 004214          499 ------------IA---TYDKHEDKIWALAVGKKTE-------------MFATGGSDALVNLWHDSTAAEREEAFRKEEE  550 (768)
Q Consensus       499 ------------~~---~~~~~~~~v~~l~~s~~~~-------------~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~  550 (768)
                                  +.   .+..+...+..+.|.+...             .|+..-+.|-+.+-.+..+....-...    
T Consensus       335 ~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~~~~~~~~~~~~~~L~l~f~~GPl~vl~~~~G~~~~G~l~----  410 (545)
T PF11768_consen  335 MQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQLSSQGEFYADTYDLLLLVFERGPLAVLRFKLGVFTRGDLG----  410 (545)
T ss_pred             eeeccccCCCccEEeeehhccCcchhheeEeccCCCccccCCCcCCccceEEEEEcCCCeEEEEEeeccccCCccc----
Confidence                        11   1123455667788874322             444444555555555443322111000    


Q ss_pred             HHHhhhHHHHhhcccchHHHHHHHhhcCCc
Q 004214          551 AVLRGQELENAVLDADYTKAIQVAFELRRP  580 (768)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  580 (768)
                         ...-...+++..+..+|+.+...++-.
T Consensus       411 ---~~eL~~~yl~~~qi~eAi~lL~smnW~  437 (545)
T PF11768_consen  411 ---LVELISQYLRCDQIEEAINLLLSMNWN  437 (545)
T ss_pred             ---HHHHHHHHHhcCCHHHHHHHHHhCCcc
Confidence               001122466666777888877776643

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.87  E-value=0.025  Score=56.42  Aligned_cols=231  Identities=16%  Similarity=0.174  Sum_probs=131.1

Q ss_pred             CCCEEEEEeCCCcEEEEECC-CceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe-------
Q 004214          251 EEQYLAVATNIEQVQVYDLS-SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV-------  322 (768)
Q Consensus       251 ~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------  322 (768)
                      .++.+++|+++| +.+++.. .........  ...|..+.  ..+.-+.+++.+  |+.++++++..-.....       
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~--vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLS--VLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEE--EecccCEEEEEc--CCccEEEEchhhcccccccccccc
Confidence            567899999988 9999983 233332222  22277776  666666544443  59999999875433321       


Q ss_pred             -------eecccCcEEEEE--EecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC
Q 004214          323 -------GTGHMGAVGAVA--FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS  393 (768)
Q Consensus       323 -------~~~~~~~v~~~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  393 (768)
                             .-.....+...+  -.+.+...+++ .....|.+|..........     ..... ..-...+.+++|.  ++
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v-a~kk~i~i~~~~~~~~~f~-----~~~ke-~~lp~~~~~i~~~--~~  149 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCV-AVKKKILIYEWNDPRNSFS-----KLLKE-ISLPDPPSSIAFL--GN  149 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccceEEEE-EECCEEEEEEEECCccccc-----ceeEE-EEcCCCcEEEEEe--CC
Confidence                   111223344444  12333334444 4445899988765311000     11111 2234778889998  56


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEecc------------CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeE--E
Q 004214          394 LVCTGSQDRTACVWRLPDLVSVVTFRGH------------KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK--T  459 (768)
Q Consensus       394 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~--~  459 (768)
                      .++.|..+ ...+.|+.++.....+...            ..++..+... ++.+|++-  |..-.+.|. .|++.+  .
T Consensus       150 ~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~  224 (275)
T PF00780_consen  150 KICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKST  224 (275)
T ss_pred             EEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccE
Confidence            77777754 4888899876554433211            1234444443 35666643  333333443 555443  2


Q ss_pred             eecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCC
Q 004214          460 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE  506 (768)
Q Consensus       460 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  506 (768)
                      +. -...+..+++.  ..||+..+.++ |-||++.++++++++..+.
T Consensus       225 i~-W~~~p~~~~~~--~pyli~~~~~~-iEV~~~~~~~lvQ~i~~~~  267 (275)
T PF00780_consen  225 IQ-WSSAPQSVAYS--SPYLIAFSSNS-IEVRSLETGELVQTIPLPN  267 (275)
T ss_pred             EE-cCCchhEEEEE--CCEEEEECCCE-EEEEECcCCcEEEEEECCC
Confidence            22 22344555553  45888777654 9999999999999987443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.87  E-value=4.6e-06  Score=85.40  Aligned_cols=204  Identities=16%  Similarity=0.280  Sum_probs=133.4

Q ss_pred             ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce--EEEeeecccCcEEEEEEecCCCcEEEEEe----CCCeEEEE
Q 004214          282 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC--CVGVGTGHMGAVGAVAFSKKLQNFLVSGS----SDHTIKVW  355 (768)
Q Consensus       282 ~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----~dg~i~iw  355 (768)
                      ...+.|+++.+..+ +.+++.|..+|.|.+-..+...  -.....++..+.++++|++-..+.|++|-    .|..+.+|
T Consensus        56 tqy~kcva~~y~~d-~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   56 TQYVKCVASFYGND-RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             CCCceeehhhcCCc-hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence            34556666333332 4568899999999998776432  12345578889999999997677777773    36789999


Q ss_pred             eCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceEEEEeccCCCeEEEEEcc-C
Q 004214          356 SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSP-V  433 (768)
Q Consensus       356 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~-~  433 (768)
                      |+...-..+.......     .+......+++|..+.+++.+|.....++++|++.. .....+  .+..+..+..+| .
T Consensus       135 di~s~ltvPke~~~fs-----~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~  207 (783)
T KOG1008|consen  135 DINSLLTVPKESPLFS-----SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFS  207 (783)
T ss_pred             ecccccCCCccccccc-----cccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCC
Confidence            9987633221111111     123445668889889999999999999999998732 222222  234566777888 6


Q ss_pred             CCEEEEeeCCCcEEEEe-CCCC-ceeEEeecCC----CcEEEEEEEeCCC-EEEEEeC-CCcEEEEECC
Q 004214          434 DQVVITASGDKTIKIWS-ISDG-SCLKTFEGHT----SSVLRASFLTRGA-QIVSCGA-DGLVKLWTVR  494 (768)
Q Consensus       434 ~~~l~t~~~d~~i~iwd-~~~~-~~~~~~~~~~----~~v~~~~~s~~~~-~l~s~~~-dg~i~iwd~~  494 (768)
                      ++++++.. ||.|.+|| ..+- .++..+....    ..+..++|+|... .+++... .++|+.+|+.
T Consensus       208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            77777665 89999999 3332 2333333222    2488999999644 4444444 5689999875

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.85  E-value=0.0011  Score=69.24  Aligned_cols=191  Identities=12%  Similarity=0.013  Sum_probs=111.6

Q ss_pred             EEeeecccCcEEEEEEecCCCcEEEEEeCC---CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214          320 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSD---HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC  396 (768)
Q Consensus       320 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  396 (768)
                      ...+......+..-+|+|++..+....-..   ..+.++++..+....        ...   ....-..-+|+|||+.|+
T Consensus       185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~--------i~~---~~g~~~~P~fspDG~~l~  253 (425)
T COG0823         185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV--------ILN---FNGNNGAPAFSPDGSKLA  253 (425)
T ss_pred             eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce--------eec---cCCccCCccCCCCCCEEE
Confidence            333444455566678888887644443222   358888888653211        111   223334568999998877


Q ss_pred             EEe-CCC--cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC-CC--cEEEEeCCCCceeEEeecCCCcEEEE
Q 004214          397 TGS-QDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DK--TIKIWSISDGSCLKTFEGHTSSVLRA  470 (768)
Q Consensus       397 ~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~~  470 (768)
                      ... .||  .|+++|+....... +....+.-+.=.|+|||+.++-.+. .|  .|.++|...+.. ..+......-..-
T Consensus       254 f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p  331 (425)
T COG0823         254 FSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNP  331 (425)
T ss_pred             EEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCc
Confidence            654 455  46777877766333 4433333346689999998876654 33  477777765554 3333222222267


Q ss_pred             EEEeCCCEEEEEeC-CCc--EEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 004214          471 SFLTRGAQIVSCGA-DGL--VKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG  524 (768)
Q Consensus       471 ~~s~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~  524 (768)
                      .|+|||++++..+. +|.  |.+.|+.++..+..+. +......-.|.+++..+...
T Consensus       332 ~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~  387 (425)
T COG0823         332 VWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFS  387 (425)
T ss_pred             cCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEe
Confidence            89999999887764 344  6777776666444433 23333344566666655543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.85  E-value=0.012  Score=60.19  Aligned_cols=177  Identities=18%  Similarity=0.203  Sum_probs=109.3

Q ss_pred             CcEEEEECCCceeeeeeeC-CccceEEEeeeeecCC----CEEEEEEeC----------CCeEEEEeCCCc-----eEEE
Q 004214          262 EQVQVYDLSSMSCSYVLAG-HSEIVLCLDTCALSSG----KILIVTGSK----------DNSVRLWDSESR-----CCVG  321 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~----~~~l~~~~~----------dg~i~iwd~~~~-----~~~~  321 (768)
                      ..|+++|..+.+.+..+.- ....+.++..+....+    ..+++.|+.          .|.|.++++...     +...
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            4688888888877665432 3455666665555542    566777753          289999999884     2221


Q ss_pred             e-eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC
Q 004214          322 V-GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ  400 (768)
Q Consensus       322 ~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  400 (768)
                      . -....++|++++-..  . .++++. .+.|.+|++....       ........ .....+.++...  ++++++|+.
T Consensus        82 i~~~~~~g~V~ai~~~~--~-~lv~~~-g~~l~v~~l~~~~-------~l~~~~~~-~~~~~i~sl~~~--~~~I~vgD~  147 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSFN--G-RLVVAV-GNKLYVYDLDNSK-------TLLKKAFY-DSPFYITSLSVF--KNYILVGDA  147 (321)
T ss_dssp             EEEEEESS-EEEEEEET--T-EEEEEE-TTEEEEEEEETTS-------SEEEEEEE--BSSSEEEEEEE--TTEEEEEES
T ss_pred             EEEEeecCcceEhhhhC--C-EEEEee-cCEEEEEEccCcc-------cchhhhee-cceEEEEEEecc--ccEEEEEEc
Confidence            1 124578899988773  3 344433 4789999987542       11122221 122345555544  669999998


Q ss_pred             CCcEEEEeCCC-CceEEEEec--cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 004214          401 DRTACVWRLPD-LVSVVTFRG--HKRGIWSVEFSPVDQVVITASGDKTIKIWSIS  452 (768)
Q Consensus       401 dg~i~i~d~~~-~~~~~~~~~--~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~  452 (768)
                      ...+.++..+. ...+..+..  ....++++.|-++++.++++..+|.+.++...
T Consensus       148 ~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  148 MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            88888885543 222322222  34568888898777799999999999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=97.84  E-value=6.2e-05  Score=71.00  Aligned_cols=114  Identities=20%  Similarity=0.316  Sum_probs=90.8

Q ss_pred             chHHHHHHHhhcCCchhHHHHHHHHHhchhhHHHHHHHHhhcC------HHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 004214          566 DYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALG------KEEIRQLLEYVREWNTKPKLCHVAQFVLFQL  639 (768)
Q Consensus       566 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~ll~~l~~~~~~~~~~~~~~~~l~~~  639 (768)
                      .+.+.+..+...++...++..+..+...     .++-.|+.|.      ..++..+++++..++...+.++++|.||..+
T Consensus       112 ~f~~lL~~~~~~~dy~~~~~~LkslsPS-----~iDlEIRsL~~~~~~~~~~l~~Fl~~l~~~L~~~~dfElvQa~l~vF  186 (237)
T PF04192_consen  112 EFTRLLRSASESEDYSEFLEYLKSLSPS-----AIDLEIRSLSPESGGSYEELVSFLRFLTYRLKSRRDFELVQAYLSVF  186 (237)
T ss_pred             HHHHHHHhhcccccHHHHHHHHHhCChh-----HHHHHHHhccCccCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            4455555555555555555655555443     7888888888      7889999999999999999999999999999


Q ss_pred             hccCCcchhhcccC---hHhHHHhhccchHhHHHHHHHhHhhhhhhheecccccC
Q 004214          640 FNIHPPTEIIEIKG---ISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSV  691 (768)
Q Consensus       640 l~~~~~~~~~~~~~---~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~  691 (768)
                      |++|+. .+...+.   +...|..|....++...+|+.|.      +|+..-+++
T Consensus       187 Lk~Hgd-~i~~~~~~~~L~~~l~~l~~~q~~~w~~L~~l~------~~~~cvv~f  234 (237)
T PF04192_consen  187 LKVHGD-VIMESEEEEELREALEELREAQESEWKRLDDLF------QYCSCVVSF  234 (237)
T ss_pred             HHHHHH-HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHH------hhhhhhhhh
Confidence            999965 6777788   99999999999999999999999      555554444

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.80  E-value=0.097  Score=57.88  Aligned_cols=216  Identities=11%  Similarity=0.137  Sum_probs=129.5

Q ss_pred             eEEEEeCCCceEEEeeecc----cCcEEEEEEecCCCcEEEEEeC----------CCeEEEEeCCCCCCCCcccccccee
Q 004214          308 SVRLWDSESRCCVGVGTGH----MGAVGAVAFSKKLQNFLVSGSS----------DHTIKVWSFDGLSDDAEQPMNLKAK  373 (768)
Q Consensus       308 ~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~  373 (768)
                      .++++|-++.+.+...+..    .-.+.++.|..+...++++|+.          .|.|.+|.+....       +.+..
T Consensus       751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~-------~L~~v  823 (1096)
T KOG1897|consen  751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN-------SLELV  823 (1096)
T ss_pred             EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC-------ceeee
Confidence            4677777776655443321    1234455577775667777753          4666666665311       11111


Q ss_pred             eEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC--
Q 004214          374 AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI--  451 (768)
Q Consensus       374 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~--  451 (768)
                      ... .-.+.+.++.. -+|+++|.  -+..|++|+..+.+.++.-..+..++..+...-.|..+++|.-=+++.+--.  
T Consensus       824 ~e~-~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~  899 (1096)
T KOG1897|consen  824 AET-VVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG  899 (1096)
T ss_pred             eee-eeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence            110 11122333322 16776664  4568999999998777777778899999999999999999988777766544  


Q ss_pred             CCCceeEEe-ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC-------------------CeEEEEeccCCCcEEE
Q 004214          452 SDGSCLKTF-EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT-------------------GECIATYDKHEDKIWA  511 (768)
Q Consensus       452 ~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-------------------~~~~~~~~~~~~~v~~  511 (768)
                      ..|...-.- .-+..+++++.+-.+..++ .+..+|.+.+-..++                   |+.+..+. |..-|..
T Consensus       900 ~eg~f~evArD~~p~Wmtaveil~~d~yl-gae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~-hg~lv~~  977 (1096)
T KOG1897|consen  900 DEGNFEEVARDYNPNWMTAVEILDDDTYL-GAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFR-HGSLVMQ  977 (1096)
T ss_pred             cCCceEEeehhhCccceeeEEEecCceEE-eecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeee-ecceEee
Confidence            333333222 2467788888887666555 445567776654432                   23333443 4444444


Q ss_pred             E--EEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          512 L--AVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       512 l--~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      +  ..+|-+..+.-|..+|.|-+--.-
T Consensus       978 ~~~s~~~~~~~vlfgTv~GsIG~i~sl 1004 (1096)
T KOG1897|consen  978 LGDSMIPLEPKVLFGTVNGSIGIIVSL 1004 (1096)
T ss_pred             ccccccCCCCcEEEEEccceEEEEEec
Confidence            2  345666678889999998665433

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.76  E-value=0.022  Score=56.71  Aligned_cols=229  Identities=13%  Similarity=0.157  Sum_probs=127.5

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeC-CCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccc
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDS-ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL  370 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  370 (768)
                      ....+.. |+.|+.+| +.+++. ..........  ...|..+...|+-+ .+++-+ |+.+.++++.............
T Consensus         3 ~~~~~~~-L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~~   76 (275)
T PF00780_consen    3 ADSWGDR-LLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPLA   76 (275)
T ss_pred             cccCCCE-EEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccC-EEEEEc-CCccEEEEchhhcccccccccc
Confidence            3344555 88889888 899998 3333333322  23399999999855 344433 4999999998654333111000


Q ss_pred             ce----eeEeeccCCCeEEEE--EccC-CCEEEEEeCCCcEEEEeCCCC-----ceEEEEeccCCCeEEEEEccCCCEEE
Q 004214          371 KA----KAVVAAHGKDINSLA--VAPN-DSLVCTGSQDRTACVWRLPDL-----VSVVTFRGHKRGIWSVEFSPVDQVVI  438 (768)
Q Consensus       371 ~~----~~~~~~~~~~i~~~~--~s~~-~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~v~~v~~s~~~~~l~  438 (768)
                      ..    ..........+...+  -.+. +..|+++ ....|.+|.....     +....+. -...+.+++|.  ++.++
T Consensus        77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~  152 (275)
T PF00780_consen   77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKIC  152 (275)
T ss_pred             ccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEE
Confidence            00    001112233444444  1223 3445544 4458888887553     3445554 34778899998  66777


Q ss_pred             EeeCCCcEEEEeCCCCceeEEeecCC------------CcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEE--Eecc
Q 004214          439 TASGDKTIKIWSISDGSCLKTFEGHT------------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA--TYDK  504 (768)
Q Consensus       439 t~~~d~~i~iwd~~~~~~~~~~~~~~------------~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~  504 (768)
                      .|.. +...+.|+.++.....+....            .++. +.-.+++.+|++..  . +-+|=-..|++.+  .+. 
T Consensus       153 v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~Ll~~~--~-~g~fv~~~G~~~r~~~i~-  226 (275)
T PF00780_consen  153 VGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLG-IFQLSDNEFLLCYD--N-IGVFVNKNGEPSRKSTIQ-  226 (275)
T ss_pred             EEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceE-EEEeCCceEEEEec--c-eEEEEcCCCCcCcccEEE-
Confidence            7765 458888998776544432111            1232 22234456666532  2 3333223554433  222 


Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHH
Q 004214          505 HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA  539 (768)
Q Consensus       505 ~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~  539 (768)
                      -...+.++++  ...+|++.+.++ |.||++.+++
T Consensus       227 W~~~p~~~~~--~~pyli~~~~~~-iEV~~~~~~~  258 (275)
T PF00780_consen  227 WSSAPQSVAY--SSPYLIAFSSNS-IEVRSLETGE  258 (275)
T ss_pred             cCCchhEEEE--ECCEEEEECCCE-EEEEECcCCc
Confidence            2234455555  345888877655 9999998874

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.75  E-value=0.022  Score=59.83  Aligned_cols=197  Identities=14%  Similarity=0.081  Sum_probs=101.8

Q ss_pred             eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEE
Q 004214          308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA  387 (768)
Q Consensus       308 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  387 (768)
                      .|++|+.... .+..+.-..+.+.++.|+.+.  .|++-..||.+++||+.+.. ....   .............+....
T Consensus        62 ~I~iys~sG~-ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~-~fsl---~~~i~~~~v~e~~i~~~~  134 (410)
T PF04841_consen   62 SIQIYSSSGK-LLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF-QFSL---GEEIEEEKVLECRIFAIW  134 (410)
T ss_pred             EEEEECCCCC-EeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCce-eech---hhhccccCcccccccccc
Confidence            4777765544 334333333889999998863  47788899999999986432 0000   000000111112222223


Q ss_pred             EccCCCEEEEEeCCCcEEEEeCCCCc-eEEEE---ec-----cCC-CeEE-EEEccCCCEEEEeeCCCcEEEEeCCCCce
Q 004214          388 VAPNDSLVCTGSQDRTACVWRLPDLV-SVVTF---RG-----HKR-GIWS-VEFSPVDQVVITASGDKTIKIWSISDGSC  456 (768)
Q Consensus       388 ~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~---~~-----~~~-~v~~-v~~s~~~~~l~t~~~d~~i~iwd~~~~~~  456 (768)
                      +..+|  ++.-+.++.+.+.+--... ....+   .+     +.. ..+. ..++.+....+....++.+.+.+-...+.
T Consensus       135 ~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~  212 (410)
T PF04841_consen  135 FYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ  212 (410)
T ss_pred             cCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc
Confidence            33355  3333344444444322211 11111   11     000 0111 22444444444444445555444322211


Q ss_pred             eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccC-CCcEEEEEEcCC
Q 004214          457 LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH-EDKIWALAVGKK  517 (768)
Q Consensus       457 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~  517 (768)
                         +. ..+++..++.||+|+++|.-..+|.+.+.+.+-.+.+..+... ......|.|.-+
T Consensus       213 ---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~  270 (410)
T PF04841_consen  213 ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN  270 (410)
T ss_pred             ---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence               22 3468999999999999999999999999987666666655433 234445555543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.74  E-value=0.12  Score=57.16  Aligned_cols=413  Identities=10%  Similarity=0.056  Sum_probs=209.7

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeee--eecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEE
Q 004214           77 VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT--VPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI  154 (768)
Q Consensus        77 V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (768)
                      ++....+.+...++.++.++.+...++..+.....  ......+.++.++|-+....                 ....++
T Consensus       490 ~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~-----------------~s~~~a  552 (1096)
T KOG1897|consen  490 ITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPN-----------------KSRLLA  552 (1096)
T ss_pred             eEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCC-----------------cceEEE
Confidence            44444445555667777777777777766552222  22334466777776543110                 111333


Q ss_pred             EeeCCcEEE-EEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEe
Q 004214          155 TVGERGIVR-MWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK  233 (768)
Q Consensus       155 ~~~~~g~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~  233 (768)
                      .|.-+..+. +.-....++......      ....-.+.+....+-.+...|+++..||.+..|.+......   +...+
T Consensus       553 VG~Ws~~~~~l~~~pd~~~~~~~~l------~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~---lsd~K  623 (1096)
T KOG1897|consen  553 VGLWSDISMILTFLPDLILITHEQL------SGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQ---LSDRK  623 (1096)
T ss_pred             EEeecceEEEEEECCCcceeeeecc------CCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccce---Ecccc
Confidence            333332222 222222222211100      11122355666667677888999999999998876654321   11111


Q ss_pred             eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214          234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD  313 (768)
Q Consensus       234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd  313 (768)
                      ...--..++.--.|.......+.+++. .-..+|.....-+...+...  .+..++-..++.....++++. .+.+++.-
T Consensus       624 k~~lGt~P~~Lr~f~sk~~t~vfa~sd-rP~viY~~n~kLv~spls~k--ev~~~c~f~s~a~~d~l~~~~-~~~l~i~t  699 (1096)
T KOG1897|consen  624 KVTLGTQPISLRTFSSKSRTAVFALSD-RPTVIYSSNGKLVYSPLSLK--EVNHMCPFNSDAYPDSLASAN-GGALTIGT  699 (1096)
T ss_pred             ccccCCCCcEEEEEeeCCceEEEEeCC-CCEEEEecCCcEEEeccchH--HhhhhcccccccCCceEEEec-CCceEEEE
Confidence            111112234444444444444444443 44444443332222222111  111111001122222244443 34566554


Q ss_pred             CCCce--EEEeeecccCcEEEEEEecCCCcEEEEEeCC--------------CeEEEEeCCCCCCCCccccccceeeEee
Q 004214          314 SESRC--CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--------------HTIKVWSFDGLSDDAEQPMNLKAKAVVA  377 (768)
Q Consensus       314 ~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~  377 (768)
                      +..-+  .+++.. -......+++.+... .+.+.+..              ..++++|-.+             ...+.
T Consensus       700 id~iqkl~irtvp-l~~~prrI~~q~~sl-~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT-------------f~vl~  764 (1096)
T KOG1897|consen  700 IDEIQKLHIRTVP-LGESPRRICYQESSL-TFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT-------------FEVLS  764 (1096)
T ss_pred             ecchhhcceeeec-CCCChhheEecccce-EEEEEecccccchhhcCCcceEEEEEEecCCc-------------eeEEe
Confidence            44321  122222 223445666666322 23332221              1233343321             11122


Q ss_pred             ccC-------CCeEEEEEccC-CCEEEEEeC----------CCcEEEEeCCCCceEEEEecc--CCCeEEEEEccCCCEE
Q 004214          378 AHG-------KDINSLAVAPN-DSLVCTGSQ----------DRTACVWRLPDLVSVVTFRGH--KRGIWSVEFSPVDQVV  437 (768)
Q Consensus       378 ~~~-------~~i~~~~~s~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l  437 (768)
                      .|.       ..+.++.|..| +.++++|+.          .|.|.+|.+..+..+.....+  .+.+.++..- +|+++
T Consensus       765 ~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkll  843 (1096)
T KOG1897|consen  765 SHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLL  843 (1096)
T ss_pred             eccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEE
Confidence            221       23455557766 778888763          467888877664333333222  2344444322 36666


Q ss_pred             EEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEE--ECCCCeEEEEe-ccCCCcEEEEEE
Q 004214          438 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW--TVRTGECIATY-DKHEDKIWALAV  514 (768)
Q Consensus       438 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~-~~~~~~v~~l~~  514 (768)
                      |.-  ...|++|++.+.+.++.-..|..++..+...-.|..+++|..-+.+.+.  +-..|.....- +-++...+++.+
T Consensus       844 A~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtavei  921 (1096)
T KOG1897|consen  844 AGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEI  921 (1096)
T ss_pred             Eec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEE
Confidence            544  3689999999988888888899999999999999999999988876654  44444343332 235667777777


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          515 GKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       515 s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      -.+. .++.+-.+|.+.+-..++.
T Consensus       922 l~~d-~ylgae~~gNlf~v~~d~~  944 (1096)
T KOG1897|consen  922 LDDD-TYLGAENSGNLFTVRKDSD  944 (1096)
T ss_pred             ecCc-eEEeecccccEEEEEecCC
Confidence            6544 4555667888888776644

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.70  E-value=0.0094  Score=66.08  Aligned_cols=142  Identities=11%  Similarity=0.072  Sum_probs=99.6

Q ss_pred             EeCCCeEEEEeCCCceEEEeeecccCc-EEEEEEecC----CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee
Q 004214          303 GSKDNSVRLWDSESRCCVGVGTGHMGA-VGAVAFSKK----LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA  377 (768)
Q Consensus       303 ~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  377 (768)
                      ......|+-.|++.|+.+..+..|... |..++-...    ...-.+.|-.+..+..||.+-......     .......
T Consensus       500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v-----~~~~k~Y  574 (794)
T PF08553_consen  500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV-----DSQSKQY  574 (794)
T ss_pred             CCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee-----ecccccc
Confidence            345678999999999999999887654 555543211    112356777888999999885321000     0011112


Q ss_pred             ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214          378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI  451 (768)
Q Consensus       378 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~  451 (768)
                      ......+|++-+.+| +||+|+.+|.|++||--..+....+.+-..+|..|+.+.||+++++.+. ..+.+++.
T Consensus       575 ~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  575 SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            345667888887777 7899999999999995433444456677899999999999999988776 67777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.59  E-value=0.029  Score=55.75  Aligned_cols=222  Identities=13%  Similarity=0.047  Sum_probs=131.1

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccc
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK  371 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  371 (768)
                      +.+..+.++.+--..+.|.-|+..++..... . +.+.+.++.....+. .|+++..  .+.+++.......      ..
T Consensus        32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~-~-~p~~~~~~~~~d~~g-~Lv~~~~--g~~~~~~~~~~~~------t~  100 (307)
T COG3386          32 WDPDRGALLWVDILGGRIHRLDPETGKKRVF-P-SPGGFSSGALIDAGG-RLIACEH--GVRLLDPDTGGKI------TL  100 (307)
T ss_pred             CcCCCCEEEEEeCCCCeEEEecCCcCceEEE-E-CCCCcccceeecCCC-eEEEEcc--ccEEEeccCCcee------EE
Confidence            5566666677777788899998876643322 2 223334444433333 3444432  2455555322110      00


Q ss_pred             eeeEe-eccCCCeEEEEEccCCCEEEEEeC-----C----CcEEEEeCC-CCceEEEEeccCCCeEEEEEccCCCEEEEe
Q 004214          372 AKAVV-AAHGKDINSLAVAPNDSLVCTGSQ-----D----RTACVWRLP-DLVSVVTFRGHKRGIWSVEFSPVDQVVITA  440 (768)
Q Consensus       372 ~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~-----d----g~i~i~d~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~  440 (768)
                      ..... .......+.+.+.|+|.+.+....     .    ..-.+|.+. .+.....+..+-..-+.++||||++.|+.+
T Consensus       101 ~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~a  180 (307)
T COG3386         101 LAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVA  180 (307)
T ss_pred             eccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEE
Confidence            00000 111245567888999887766544     1    112344444 556666666666667889999999888877


Q ss_pred             eCC-CcEEEEeCCC--Cce-----eEEeecCCCcEEEEEEEeCCCEEEEEeCCC-cEEEEECCCCeEEEEeccCCCcEEE
Q 004214          441 SGD-KTIKIWSISD--GSC-----LKTFEGHTSSVLRASFLTRGAQIVSCGADG-LVKLWTVRTGECIATYDKHEDKIWA  511 (768)
Q Consensus       441 ~~d-~~i~iwd~~~--~~~-----~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~  511 (768)
                      ... +.|.-|++..  +..     ...+....+..-.++...+|++.+++..+| .|.+|+.+ |+.+..+..+...+++
T Consensus       181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~  259 (307)
T COG3386         181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN  259 (307)
T ss_pred             eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence            654 7788887752  211     112222345555677778888776555554 89999988 9999999877788888


Q ss_pred             EEEc-CCCCEEEEEe
Q 004214          512 LAVG-KKTEMFATGG  525 (768)
Q Consensus       512 l~~s-~~~~~l~s~~  525 (768)
                      ++|- |+.+.|...+
T Consensus       260 ~~FgG~~~~~L~iTs  274 (307)
T COG3386         260 PAFGGPDLNTLYITS  274 (307)
T ss_pred             ceEeCCCcCEEEEEe
Confidence            8885 4455554443

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=0.00035  Score=72.15  Aligned_cols=93  Identities=16%  Similarity=0.236  Sum_probs=80.0

Q ss_pred             CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeE-EEEEccCCCEEEEeeCCCcEEEEeCCCCceeE
Q 004214          380 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIW-SVEFSPVDQVVITASGDKTIKIWSISDGSCLK  458 (768)
Q Consensus       380 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~  458 (768)
                      ...+.-+.|+|.-.++|.+..+|.+.+..+. ...+.++..|..+++ +++|.|||++||+|-.||+|++.|+.++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3567889999999999999999999999988 888888887888888 99999999999999999999999999998777


Q ss_pred             Eee-cCCCcEEEEEEE
Q 004214          459 TFE-GHTSSVLRASFL  473 (768)
Q Consensus       459 ~~~-~~~~~v~~~~~s  473 (768)
                      .+. .....|.++.|.
T Consensus        99 ~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWD  114 (665)
T ss_pred             ccccccccchheeecc
Confidence            632 245567777775

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.53  E-value=0.18  Score=53.68  Aligned_cols=239  Identities=11%  Similarity=0.099  Sum_probs=130.3

Q ss_pred             eecCCCEEEEEEeCCC----eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC----------CeEEEEeC
Q 004214          292 ALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD----------HTIKVWSF  357 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----------g~i~iwd~  357 (768)
                      ++++++.++++-+..|    .++++|+.+++.+...-... ....+.|.+++..++.+...+          ..|..|.+
T Consensus       131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~  209 (414)
T PF02897_consen  131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKL  209 (414)
T ss_dssp             ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEET
T ss_pred             ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEEC
Confidence            6677887666655555    59999999998765422111 122399999988666666443          23677777


Q ss_pred             CCCCCCCccccccceeeEeeccCCC--eEEEEEccCCCEEEEEeCC----CcEEEEeCCCC----ceEEEEeccCCCeEE
Q 004214          358 DGLSDDAEQPMNLKAKAVVAAHGKD--INSLAVAPNDSLVCTGSQD----RTACVWRLPDL----VSVVTFRGHKRGIWS  427 (768)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~----~~~~~~~~~~~~v~~  427 (768)
                      ....        ......+......  ...+..++++++++.....    ..+.+.++..+    .....+......+..
T Consensus       210 gt~~--------~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~  281 (414)
T PF02897_consen  210 GTPQ--------SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY  281 (414)
T ss_dssp             TS-G--------GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred             CCCh--------HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence            5431        1112333332222  5678899999998765433    34788888764    233444444444444


Q ss_pred             EEEccCCCEEEEee---CCCcEEEEeCCCCce---eEEeecCCCcEEEEEEEeCCCEEEEEe-CCC--cEEEEECCCCeE
Q 004214          428 VEFSPVDQVVITAS---GDKTIKIWSISDGSC---LKTFEGHTSSVLRASFLTRGAQIVSCG-ADG--LVKLWTVRTGEC  498 (768)
Q Consensus       428 v~~s~~~~~l~t~~---~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg--~i~iwd~~~~~~  498 (768)
                      ..-+..+.+++...   ..+.|.-.++.+...   ...+..+...+.-..+...+.+|+... .++  .|+++++..+..
T Consensus       282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~  361 (414)
T PF02897_consen  282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE  361 (414)
T ss_dssp             EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred             EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence            33333444444332   346677778877653   235555666444444555566665544 444  689999984444


Q ss_pred             EEEecc-CCCcEEEEEEcCCCCEEE-EEe---CCCcEEEEEcCCHH
Q 004214          499 IATYDK-HEDKIWALAVGKKTEMFA-TGG---SDALVNLWHDSTAA  539 (768)
Q Consensus       499 ~~~~~~-~~~~v~~l~~s~~~~~l~-s~~---~dg~v~vw~~~~~~  539 (768)
                      ...+.. -.+.|..+...+++..+. +.+   .-+.+..||+.+++
T Consensus       362 ~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  362 SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence            444432 344566666556555433 222   23456777776653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.52  E-value=0.059  Score=53.60  Aligned_cols=217  Identities=11%  Similarity=0.040  Sum_probs=122.0

Q ss_pred             ecCCCCEEEEEeCCCcEEEEECCCceee-eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec-
Q 004214          248 LGEEEQYLAVATNIEQVQVYDLSSMSCS-YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-  325 (768)
Q Consensus       248 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~-~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-  325 (768)
                      .+..+.++.+--..+.|.-|+..++... .......   .++.  ....++. |+++.  ..+.+++..++..+..+.. 
T Consensus        33 ~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~---~~~~--~~d~~g~-Lv~~~--~g~~~~~~~~~~~~t~~~~~  104 (307)
T COG3386          33 DPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGF---SSGA--LIDAGGR-LIACE--HGVRLLDPDTGGKITLLAEP  104 (307)
T ss_pred             cCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCc---ccce--eecCCCe-EEEEc--cccEEEeccCCceeEEeccc
Confidence            3334445566666788888888766433 2222222   3332  3344544 44443  3356666665544222221 


Q ss_pred             ----ccCcEEEEEEecCCCcEEEEEeCCC----------eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214          326 ----HMGAVGAVAFSKKLQNFLVSGSSDH----------TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN  391 (768)
Q Consensus       326 ----~~~~v~~~~~~~~~~~~l~s~~~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  391 (768)
                          .......+.+.|+|.  +..+....          .-.+|.++.         ..........+-..-+.++||||
T Consensus       105 ~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p---------~g~~~~l~~~~~~~~NGla~SpD  173 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDP---------DGGVVRLLDDDLTIPNGLAFSPD  173 (307)
T ss_pred             cCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcC---------CCCEEEeecCcEEecCceEECCC
Confidence                113345667778766  33332221          012333321         01122222333345678999999


Q ss_pred             CCEEEEEeCC-CcEEEEeCCC--C----ce-EEEEeccCCCeEEEEEccCCCEEEEeeCCC-cEEEEeCCCCceeEEeec
Q 004214          392 DSLVCTGSQD-RTACVWRLPD--L----VS-VVTFRGHKRGIWSVEFSPVDQVVITASGDK-TIKIWSISDGSCLKTFEG  462 (768)
Q Consensus       392 ~~~l~~~~~d-g~i~i~d~~~--~----~~-~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~-~i~iwd~~~~~~~~~~~~  462 (768)
                      ++.+..+... +.|.-|++..  +    +. ...+....+..-.++...+|.+.+++...| .|.+|+.. |+++..+.-
T Consensus       174 g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l  252 (307)
T COG3386         174 GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL  252 (307)
T ss_pred             CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence            9877777654 7788887752  1    11 122222345556677888888886555554 89999987 999999998


Q ss_pred             CCCcEEEEEEE-eCCCEEEEEeC
Q 004214          463 HTSSVLRASFL-TRGAQIVSCGA  484 (768)
Q Consensus       463 ~~~~v~~~~~s-~~~~~l~s~~~  484 (768)
                      +...+++++|- ++.+.|+..+.
T Consensus       253 P~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         253 PVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CCCCCccceEeCCCcCEEEEEec
Confidence            87888999995 45555544443

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.0004  Score=71.74  Aligned_cols=93  Identities=17%  Similarity=0.164  Sum_probs=78.1

Q ss_pred             CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEE-EEEEEeCCCEEEEEeCCCcEEEEECCCCeEEE
Q 004214          422 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL-RASFLTRGAQIVSCGADGLVKLWTVRTGECIA  500 (768)
Q Consensus       422 ~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  500 (768)
                      ...+.-+.|+|.-.++|++..+|.|-+..+. .+.+.++.-|...++ +++|.|||+.|+.|-.||+|++.|+.++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3467789999999999999999999999987 888888887777777 99999999999999999999999999998777


Q ss_pred             Ee-ccCCCcEEEEEEc
Q 004214          501 TY-DKHEDKIWALAVG  515 (768)
Q Consensus       501 ~~-~~~~~~v~~l~~s  515 (768)
                      .. .....+|.++-|+
T Consensus        99 ~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWD  114 (665)
T ss_pred             ccccccccchheeecc
Confidence            62 1234556666554

>smart00320 WD40 WD40 repeats

Probab=97.45  E-value=0.00036  Score=44.72  Aligned_cols=39  Identities=46%  Similarity=0.788  Sum_probs=34.5

Q ss_pred             CEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEE
Q 004214           20 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD   60 (768)
Q Consensus        20 ~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd   60 (768)
                      +.+...+.+|...|.++.|+|++..  +++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKY--LASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCE--EEEecCCCeEEEcC
Confidence            4567888899999999999998755  99999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.44  E-value=0.17  Score=51.11  Aligned_cols=269  Identities=12%  Similarity=0.068  Sum_probs=121.9

Q ss_pred             CCCEEEEEeC---CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeeccc
Q 004214          251 EEQYLAVATN---IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM  327 (768)
Q Consensus       251 ~~~~l~~~~~---~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  327 (768)
                      +++.|+.++.   ...+.+.|+.+++..+.-.+........  +..++++. ++-......++-.|+.+.+....+....
T Consensus        46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~--~~s~~~~~-~~Yv~~~~~l~~vdL~T~e~~~vy~~p~  122 (386)
T PF14583_consen   46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGG--FLSPDDRA-LYYVKNGRSLRRVDLDTLEERVVYEVPD  122 (386)
T ss_dssp             TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT---EE-TTSSE-EEEEETTTEEEEEETTT--EEEEEE--T
T ss_pred             CCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccce--EEecCCCe-EEEEECCCeEEEEECCcCcEEEEEECCc
Confidence            4544444443   4567778999998876655432211111  14466665 4444455688999999988777777666


Q ss_pred             CcEEEEEEecCCCcEEEEEeC-----------------------CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeE
Q 004214          328 GAVGAVAFSKKLQNFLVSGSS-----------------------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN  384 (768)
Q Consensus       328 ~~v~~~~~~~~~~~~l~s~~~-----------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~  384 (768)
                      .-+....|..+.....+++..                       ...|.--|+.++           ...........+.
T Consensus       123 ~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG-----------~~~~v~~~~~wlg  191 (386)
T PF14583_consen  123 DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG-----------ERKVVFEDTDWLG  191 (386)
T ss_dssp             TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-------------EEEEEEESS-EE
T ss_pred             ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC-----------ceeEEEecCcccc
Confidence            666555554221111233321                       011122222211           2233333455678


Q ss_pred             EEEEccCCC-EEEEEeC---CC-cEEEEeCCC-CceEEEEeccC--CCeEEEEEccCCCEEEEe-----eCCCcEEEEeC
Q 004214          385 SLAVAPNDS-LVCTGSQ---DR-TACVWRLPD-LVSVVTFRGHK--RGIWSVEFSPVDQVVITA-----SGDKTIKIWSI  451 (768)
Q Consensus       385 ~~~~s~~~~-~l~~~~~---dg-~i~i~d~~~-~~~~~~~~~~~--~~v~~v~~s~~~~~l~t~-----~~d~~i~iwd~  451 (768)
                      .+.|+|... +|+.|-.   +. .-+||-+++ +.....+..+.  ..+..=-|.|||..|.--     +.+..|.-+|+
T Consensus       192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~  271 (386)
T PF14583_consen  192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP  271 (386)
T ss_dssp             EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred             CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence            899999544 4444332   22 235665532 33333333332  234445689999866542     23556778888


Q ss_pred             CCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCC----------------cEEEEECCCCeEEEEe---------ccCC
Q 004214          452 SDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG----------------LVKLWTVRTGECIATY---------DKHE  506 (768)
Q Consensus       452 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----------------~i~iwd~~~~~~~~~~---------~~~~  506 (768)
                      .+++.......  .+.....-++||++++-=+.|.                -|+++++..+......         .++.
T Consensus       272 ~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~  349 (386)
T PF14583_consen  272 DTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDR  349 (386)
T ss_dssp             TT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBS
T ss_pred             CCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCC
Confidence            88765432221  2333445567888776544332                4667888776643211         1111


Q ss_pred             C-cEEEEEEcCCCCEEE-EEeCCCcEEEEEc
Q 004214          507 D-KIWALAVGKKTEMFA-TGGSDALVNLWHD  535 (768)
Q Consensus       507 ~-~v~~l~~s~~~~~l~-s~~~dg~v~vw~~  535 (768)
                      . .=....|+|||++++ ++...|...||-.
T Consensus       350 q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  350 QVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             STT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             ccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence            1 124578999999866 5556787777754

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.43  E-value=0.13  Score=53.16  Aligned_cols=85  Identities=16%  Similarity=0.303  Sum_probs=59.7

Q ss_pred             eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEE-EE-EccCC----------------C-EE
Q 004214          377 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS-VE-FSPVD----------------Q-VV  437 (768)
Q Consensus       377 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~-v~-~s~~~----------------~-~l  437 (768)
                      ......+.+++.+|++++.|+...=|.|.++|+.++..++.++|....-.. +. ..+..                . ++
T Consensus       304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv  383 (415)
T PF14655_consen  304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV  383 (415)
T ss_pred             ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence            344556889999999999999888899999999999888877765432111 10 01100                1 23


Q ss_pred             EEeeCCCcEEEEeCCCCceeEEee
Q 004214          438 ITASGDKTIKIWSISDGSCLKTFE  461 (768)
Q Consensus       438 ~t~~~d~~i~iwd~~~~~~~~~~~  461 (768)
                      +-+-.-|.|.||+++.|..+..+.
T Consensus       384 IyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  384 IYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             EEeccCCeEEEEecCCCCEEEEEE
Confidence            345567899999999888877765

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.42  E-value=0.016  Score=63.38  Aligned_cols=209  Identities=14%  Similarity=0.118  Sum_probs=114.1

Q ss_pred             CCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEe-----CCCeEEEEeCCCCCCCCccccccceeeEeeccC
Q 004214          306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS-----SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG  380 (768)
Q Consensus       306 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  380 (768)
                      +|.+.-.+-..-.++.-..+....+.+.+++|+|....++..     .|..-.+|-...+..         ......  .
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~---------~~~lt~--g  396 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV---------AVQVLE--G  396 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc---------ceeeec--C
Confidence            666655443332333222233346788999999886555542     244334443321110         111111  2


Q ss_pred             CCeEEEEEccCCCEEEEEeCC------------CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEE
Q 004214          381 KDINSLAVAPNDSLVCTGSQD------------RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKI  448 (768)
Q Consensus       381 ~~i~~~~~s~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~i  448 (768)
                      ...+.-.|+|+|..+++....            +.+.+.++..+....   .....|..+.|||||..++... ++.|.+
T Consensus       397 ~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        397 HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             CCCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            236788999998877776533            223333443332222   2356799999999999888766 477777


Q ss_pred             ---EeCCCCce-e---EEee-cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC-CeEEEEecc--CCCcEEEEEEcCC
Q 004214          449 ---WSISDGSC-L---KTFE-GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT-GECIATYDK--HEDKIWALAVGKK  517 (768)
Q Consensus       449 ---wd~~~~~~-~---~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~--~~~~v~~l~~s~~  517 (768)
                         -....|.. +   ..+. +-...+.++.|.+++.++ ++..++.-.+|.+.- |.....+..  ...++.+++-++.
T Consensus       473 a~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~  551 (591)
T PRK13616        473 AVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS  551 (591)
T ss_pred             EEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc
Confidence               44445541 1   1122 233346889999999854 555555445554431 322222222  3567777877763


Q ss_pred             CCEEEEEeCCCcEEE
Q 004214          518 TEMFATGGSDALVNL  532 (768)
Q Consensus       518 ~~~l~s~~~dg~v~v  532 (768)
                        .++....+|.+.+
T Consensus       552 --~iyv~~~~g~~~l  564 (591)
T PRK13616        552 --TVYVTDARAVLQL  564 (591)
T ss_pred             --eEEEEcCCceEEe
Confidence              4556666765443

>smart00320 WD40 WD40 repeats

Probab=97.36  E-value=0.00054  Score=43.84  Aligned_cols=39  Identities=41%  Similarity=0.616  Sum_probs=34.9

Q ss_pred             CeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214           64 KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD  102 (768)
Q Consensus        64 ~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd  102 (768)
                      ++++..+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456677788999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.01  Score=60.50  Aligned_cols=147  Identities=12%  Similarity=0.133  Sum_probs=104.4

Q ss_pred             cCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc------EEEEEeCCCeEEEEeCCCCCCCCccc
Q 004214          294 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN------FLVSGSSDHTIKVWSFDGLSDDAEQP  367 (768)
Q Consensus       294 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~l~s~~~dg~i~iwd~~~~~~~~~~~  367 (768)
                      .+.+.++.++.....++-.|++.|+.+.....+.. |.-+.+.|+.+.      --+.|-.|..|.-||.+-....    
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~----  417 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN----  417 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc----
Confidence            34455567777778899999999999999988776 777777776531      2345667888999998732210    


Q ss_pred             cccceeeEeec----cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCC
Q 004214          368 MNLKAKAVVAA----HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD  443 (768)
Q Consensus       368 ~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d  443 (768)
                          .......    ......|.+-..+| ++++|+.+|.|++||--.......+++-..+|..|..+.+|++|++.+. 
T Consensus       418 ----kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-  491 (644)
T KOG2395|consen  418 ----KLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-  491 (644)
T ss_pred             ----eeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-
Confidence                1111122    22345566655555 8999999999999997444444567788899999999999999887765 


Q ss_pred             CcEEEEeC
Q 004214          444 KTIKIWSI  451 (768)
Q Consensus       444 ~~i~iwd~  451 (768)
                      ..+.+-++
T Consensus       492 tyLlLi~t  499 (644)
T KOG2395|consen  492 TYLLLIDT  499 (644)
T ss_pred             cEEEEEEE
Confidence            66666664

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.31  E-value=0.0024  Score=70.37  Aligned_cols=98  Identities=28%  Similarity=0.471  Sum_probs=75.7

Q ss_pred             EEEeecCCCcEEEEECCCCEEE-EEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCT-HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM   80 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~-~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l   80 (768)
                      ++|.|++.|.|...|+.+.-+. +.=..-.++|++++|+.+|+.  ++.|-.+|.|.+||+.+++.++.+..|..+.+++
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~--l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSL--LLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCce--eccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            5888999999999998765322 111224679999999999988  9999999999999999999999888776655554


Q ss_pred             EE---cCCCCEEEEEeCCCeEEEEEC
Q 004214           81 AI---TSDGSTLISAGRDKVVNLWDL  103 (768)
Q Consensus        81 ~f---s~d~~~L~s~~~dg~i~vWd~  103 (768)
                      -+   ..++..++++..-|.  +|.+
T Consensus       179 i~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCc--eEEE
Confidence            43   456667888877775  6654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.29  E-value=0.016  Score=64.39  Aligned_cols=139  Identities=11%  Similarity=0.078  Sum_probs=95.5

Q ss_pred             CCEEEEE-eCCCcEEEEeCCCCceEEEEeccCCC-eEEEEEccC-------CCEEEEeeCCCcEEEEeCCCC-ceeEEee
Q 004214          392 DSLVCTG-SQDRTACVWRLPDLVSVVTFRGHKRG-IWSVEFSPV-------DQVVITASGDKTIKIWSISDG-SCLKTFE  461 (768)
Q Consensus       392 ~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~v~~s~~-------~~~l~t~~~d~~i~iwd~~~~-~~~~~~~  461 (768)
                      .++|+.. .....|+-.|+..|+.+..+..|... |..+  .|+       ..-.+.|-.+..+..||.+-. ..+..-.
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~  570 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ  570 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence            3344433 34578999999999999999987654 5544  443       234456777789999998753 2221111


Q ss_pred             ----cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeE-EEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214          462 ----GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC-IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       462 ----~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~  535 (768)
                          ......+|++-+.+| +||+|+.+|.||+||- .|.. -..+.+-..+|.+|..+.||+++++.+.. .|.+++.
T Consensus       571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t  646 (794)
T PF08553_consen  571 SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT  646 (794)
T ss_pred             ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence                133455666666666 8999999999999994 4433 33455678999999999999999887755 4556553

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.29  E-value=0.25  Score=49.88  Aligned_cols=280  Identities=15%  Similarity=0.105  Sum_probs=130.4

Q ss_pred             eEEEEccCCCceEEEEe-cCe--EEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 004214          194 TAATVLPSNQGLLCVTA-DQQ--LLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS  270 (768)
Q Consensus       194 ~~~~~~~~~~~l~~~~~-dg~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~  270 (768)
                      ..-+|.+++..|+..+. +|.  ++..++.+..  ..++   .  .+..........+ ++.+.++...+...++-.|+.
T Consensus        39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QL---T--dg~g~~~~g~~~s-~~~~~~~Yv~~~~~l~~vdL~  110 (386)
T PF14583_consen   39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQL---T--DGPGDNTFGGFLS-PDDRALYYVKNGRSLRRVDLD  110 (386)
T ss_dssp             TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE--------SS-B-TTT-EE--TTSSEEEEEETTTEEEEEETT
T ss_pred             cCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--EEEC---c--cCCCCCccceEEe-cCCCeEEEEECCCeEEEEECC
Confidence            34456788888876664 554  4444444332  1111   1  1111112223334 445665555555789999999


Q ss_pred             CceeeeeeeCCccceEEEeeeeecCCCEEEEEEe----------------------CCCeEEEEeCCCceEEEeeecccC
Q 004214          271 SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS----------------------KDNSVRLWDSESRCCVGVGTGHMG  328 (768)
Q Consensus       271 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~----------------------~dg~i~iwd~~~~~~~~~~~~~~~  328 (768)
                      +.+....+......+....+...+++.. ++..-                      ....|.-.|+.+|+....+. ...
T Consensus       111 T~e~~~vy~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~  188 (386)
T PF14583_consen  111 TLEERVVYEVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTD  188 (386)
T ss_dssp             T--EEEEEE--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS
T ss_pred             cCcEEEEEECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCc
Confidence            9887666666666554444334444444 32211                      11235556777777655544 455


Q ss_pred             cEEEEEEecCCCcEEEEEeC---CCe-EEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC----
Q 004214          329 AVGAVAFSKKLQNFLVSGSS---DHT-IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ----  400 (768)
Q Consensus       329 ~v~~~~~~~~~~~~l~s~~~---dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----  400 (768)
                      .+..+.|+|..+.+++-|-+   +.. -++|-++......      +.... ......+..=-|.|||..|..-+.    
T Consensus       189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~------~~v~~-~~~~e~~gHEfw~~DG~~i~y~~~~~~~  261 (386)
T PF14583_consen  189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV------KKVHR-RMEGESVGHEFWVPDGSTIWYDSYTPGG  261 (386)
T ss_dssp             -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---------EESS----TTEEEEEEEE-TTSS-EEEEEEETTT
T ss_pred             cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc------eeeec-CCCCcccccccccCCCCEEEEEeecCCC
Confidence            67788999987765555432   322 3667665332111      11111 111234555678999987765332    


Q ss_pred             -CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCC----------------cEEEEeCCCCceeEEe---
Q 004214          401 -DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK----------------TIKIWSISDGSCLKTF---  460 (768)
Q Consensus       401 -dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~----------------~i~iwd~~~~~~~~~~---  460 (768)
                       +..|.-+|+.+++......  ......+-.++||++++-=+.|.                -|+++++..+....-.   
T Consensus       262 ~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~  339 (386)
T PF14583_consen  262 QDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHD  339 (386)
T ss_dssp             --EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE--
T ss_pred             CceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeecc
Confidence             3467778888876543222  22455666788898876544432                4667888766543211   


Q ss_pred             ------ecCCC-cEEEEEEEeCCCEEE-EEeCCCcEEEEE
Q 004214          461 ------EGHTS-SVLRASFLTRGAQIV-SCGADGLVKLWT  492 (768)
Q Consensus       461 ------~~~~~-~v~~~~~s~~~~~l~-s~~~dg~i~iwd  492 (768)
                            .++.. .=....|+|||++++ ++...|...||-
T Consensus       340 ~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  340 TSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             -----BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             CcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence                  11111 124578999999865 555577666664

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.22  E-value=0.09  Score=50.05  Aligned_cols=178  Identities=13%  Similarity=0.160  Sum_probs=120.8

Q ss_pred             cCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecce--eEeeEEecCCCCCccccccccchhhhhcccCC
Q 004214           71 DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE--MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRS  148 (768)
Q Consensus        71 ~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (768)
                      .+-...+.++.|+|+.+.|++......-.||=..+|..+.++|...  ..+.+.+..++.                    
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~--------------------  141 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ--------------------  141 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE--------------------
Confidence            3444559999999999999999999988999889999999988543  355666665553                    


Q ss_pred             cceEEEEeeCCcEEEEEEcCCce-eeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccc-
Q 004214          149 LEIHFITVGERGIVRMWNADSAC-LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK-  226 (768)
Q Consensus       149 ~~~~~~~~~~~g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~-  226 (768)
                         +.++--.++.+.++.++... ............. ......++-.+++.|.+..++.+-..+-+.+|.....+... 
T Consensus       142 ---fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~-~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~  217 (316)
T COG3204         142 ---FVIVDERDRALYLFTVDADTTVISAKVQKIPLGT-TNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLS  217 (316)
T ss_pred             ---EEEEehhcceEEEEEEcCCccEEeccceEEeccc-cCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccc
Confidence               44555556777777766652 2222221111111 12226788999999999999999998888888877544211 


Q ss_pred             --eeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc
Q 004214          227 --MELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM  272 (768)
Q Consensus       227 --~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~  272 (768)
                        ..........-.-..+.++.|.+..+.+++.+..++.+.-.|....
T Consensus       218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence              0111111111223467788888888899999999898888887655

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.15  E-value=0.016  Score=63.39  Aligned_cols=148  Identities=16%  Similarity=0.132  Sum_probs=91.1

Q ss_pred             CCeEEEEEccCCCEEEEEe------CCC--cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCC---------
Q 004214          381 KDINSLAVAPNDSLVCTGS------QDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD---------  443 (768)
Q Consensus       381 ~~i~~~~~s~~~~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d---------  443 (768)
                      ..+.+.+++|+|+.++...      .|.  .|.+++.. +.......+  ...+.-.|+|+|..|++....         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4678899999999887765      243  45555542 222222232  347888999998877776432         


Q ss_pred             ---CcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEE---EECCCCeE-E---EEe-ccCCCcEEEE
Q 004214          444 ---KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL---WTVRTGEC-I---ATY-DKHEDKIWAL  512 (768)
Q Consensus       444 ---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i---wd~~~~~~-~---~~~-~~~~~~v~~l  512 (768)
                         +.+.+.++..+....   .....|..+.|||||..++... +|.|++   -....|+. +   ..+ ..-...+.++
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL  502 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence               233333444443322   2356799999999999987766 477777   44445541 1   112 1233346889


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          513 AVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       513 ~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      .|.+++..+ ++..++.-.+|.+.
T Consensus       503 ~W~~~~~L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        503 DWRTGDSLV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             eEecCCEEE-EEecCCCCceEEEe
Confidence            999999854 55555555667654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.11  E-value=0.77  Score=52.05  Aligned_cols=111  Identities=15%  Similarity=0.148  Sum_probs=69.6

Q ss_pred             EEeecCCCcEEEEECCCCEEEEEEEcCCCc--------EEEEEEeeC--C------------CccEEEEEeCCCcEEEEE
Q 004214            3 ALLEGADRKVLVWDVDGGFCTHYFKGHKGV--------VSSILFHPD--T------------DKSLLFSGSDDATVRVWD   60 (768)
Q Consensus         3 latg~~dg~i~vwd~~~~~~~~~l~gh~~~--------V~~l~~spd--~------------~~~~l~sg~~dg~I~iWd   60 (768)
                      |..++.++.|.-.|..+|+.+-++......        ...+++...  +            ....++.++.|+.+.-.|
T Consensus       197 lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALD  276 (764)
T TIGR03074       197 LYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALD  276 (764)
T ss_pred             EEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEE
Confidence            445667899999999999988877643221        122333211  0            111378888999999999


Q ss_pred             CCCCeeEEEecCccceeE-------------EEEEcC--CCCEEEEEeC----------CCeEEEEECCCCeeeeeeec
Q 004214           61 LLAKKCVATLDKHFSRVT-------------SMAITS--DGSTLISAGR----------DKVVNLWDLRDYSCKLTVPT  114 (768)
Q Consensus        61 ~~~~~~~~~l~~h~~~V~-------------~l~fs~--d~~~L~s~~~----------dg~i~vWd~~~~~~~~~~~~  114 (768)
                      ..+|+.+..+.. .+.|.             .+.-+|  .+..++.++.          +|.|+-+|..+|+.+-.+..
T Consensus       277 A~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~  354 (764)
T TIGR03074       277 ADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP  354 (764)
T ss_pred             CCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence            999999877642 22121             111112  1335555532          57899999999988777653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.10  E-value=0.05  Score=43.83  Aligned_cols=101  Identities=18%  Similarity=0.189  Sum_probs=66.8

Q ss_pred             EEEEEE---ecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 004214          330 VGAVAF---SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV  406 (768)
Q Consensus       330 v~~~~~---~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  406 (768)
                      |+++++   ..+|.+-|++|+.|..|++|+-..             ..........|++++-... ..++.+..+|+|-+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------------~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGv   67 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------------IVAEITETDKVTSLCSLGG-GRFAYALANGTVGV   67 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------------EEEEEecccceEEEEEcCC-CEEEEEecCCEEEE
Confidence            455555   446667899999999999997542             2222233456777777665 56899999999999


Q ss_pred             EeCCCCceEEEEeccCCCeEEEEEcc-CC---CEEEEeeCCCcEE
Q 004214          407 WRLPDLVSVVTFRGHKRGIWSVEFSP-VD---QVVITASGDKTIK  447 (768)
Q Consensus       407 ~d~~~~~~~~~~~~~~~~v~~v~~s~-~~---~~l~t~~~d~~i~  447 (768)
                      |+-  ...+...+. ...++++++.. ++   .-|++|-.+|.|-
T Consensus        68 Y~~--~~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   68 YDR--SQRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EeC--cceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            975  334444443 33366665544 22   3688888888764

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=97.08  E-value=0.48  Score=49.19  Aligned_cols=280  Identities=16%  Similarity=0.202  Sum_probs=141.7

Q ss_pred             CCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEE---ec-CCCCEEEEEeCCCcEEEEECCCc--e-
Q 004214          201 SNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKF---LG-EEEQYLAVATNIEQVQVYDLSSM--S-  273 (768)
Q Consensus       201 ~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~-~~~~~l~~~~~~~~i~i~d~~~~--~-  273 (768)
                      ..+.+++++..|.+++|...........+.....+   ..+|..+..   .+ .+...||+ -.-..+.+|.+...  . 
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l---~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~  111 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL---KDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTV  111 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEec---CCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCc
Confidence            34678889999999999986554333333333333   356666654   22 23345555 44478888887321  1 


Q ss_pred             ------eeeeeeCCccceEEEeeee--ec--CCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEE
Q 004214          274 ------CSYVLAGHSEIVLCLDTCA--LS--SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL  343 (768)
Q Consensus       274 ------~~~~~~~~~~~v~~l~~~~--~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  343 (768)
                            .+..+..|.-.-.+..+|.  +.  .+..++..-+.||.+.+|+-+.......+.. .--...+++.+... .+
T Consensus       112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tD-sf  189 (418)
T PF14727_consen  112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTD-SF  189 (418)
T ss_pred             ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCC-EE
Confidence                  1222333332222222222  22  2346789999999999999877654444443 22223456666634 68


Q ss_pred             EEEeCCCeEEEEeCCCCCCCCc-------------cccccceeeEeeccCCCeEEEEE---ccCCCEEEEEeCCCcEEEE
Q 004214          344 VSGSSDHTIKVWSFDGLSDDAE-------------QPMNLKAKAVVAAHGKDINSLAV---APNDSLVCTGSQDRTACVW  407 (768)
Q Consensus       344 ~s~~~dg~i~iwd~~~~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~~~---s~~~~~l~~~~~dg~i~i~  407 (768)
                      ++++.+..+..|..........             ......+...+ .-+..+..+..   +.....+++-+. .++...
T Consensus       190 vt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~-nlGE~~l~i~v~~~~~~~~~IvvLge-r~Lf~l  267 (418)
T PF14727_consen  190 VTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSF-NLGEQALDIQVVRFSSSESDIVVLGE-RSLFCL  267 (418)
T ss_pred             EEecCceeEEEecHHHhhhccccccccccccccccccccccceeEE-ECCceeEEEEEEEcCCCCceEEEEec-ceEEEE
Confidence            8888888999987643321111             11111122222 22333333333   323333333333 455555


Q ss_pred             eCCCCceEEEEeccCCCeEEEE-Ecc----CC---CEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEE---EeCC
Q 004214          408 RLPDLVSVVTFRGHKRGIWSVE-FSP----VD---QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF---LTRG  476 (768)
Q Consensus       408 d~~~~~~~~~~~~~~~~v~~v~-~s~----~~---~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~---s~~~  476 (768)
                      +. +|......+ ......|++ |..    .+   ..++.++.++++.||.  +.+++..-.....+| ++..   ..-.
T Consensus       268 ~~-~G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PV-al~v~~~~~~~  342 (418)
T PF14727_consen  268 KD-NGSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPV-ALSVANFNGLK  342 (418)
T ss_pred             cC-CCeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCE-EEEecccCCCC
Confidence            54 343333322 222222222 211    22   2578888889999986  334443333222332 2322   2223


Q ss_pred             CEEEEEeCCCcEEEEEC
Q 004214          477 AQIVSCGADGLVKLWTV  493 (768)
Q Consensus       477 ~~l~s~~~dg~i~iwd~  493 (768)
                      ..|++-+.+|.+.+-=+
T Consensus       343 G~IV~Ls~~G~L~v~YL  359 (418)
T PF14727_consen  343 GLIVSLSDEGQLSVSYL  359 (418)
T ss_pred             ceEEEEcCCCcEEEEEe
Confidence            35666666676665443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.07  E-value=0.00082  Score=60.80  Aligned_cols=140  Identities=11%  Similarity=0.114  Sum_probs=82.8

Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEE-eccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC-CceeEEeecCCCcEEE-EE
Q 004214          395 VCTGSQDRTACVWRLPDLVSVVTF-RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLR-AS  471 (768)
Q Consensus       395 l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~-~~  471 (768)
                      +..-+.||.|.-++++..+....- .-+...   ...-.-+..+++|+.+|.|.+|+..- |.....+..-...|.+ +.
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            344466777777766543221110 111111   11122356789999999999998762 2222222222222322 22


Q ss_pred             EEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCC-CcEEEEEEcCCCCEEEEE--eCCCcEEEEEcCC
Q 004214          472 FLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE-DKIWALAVGKKTEMFATG--GSDALVNLWHDST  537 (768)
Q Consensus       472 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~s~--~~dg~v~vw~~~~  537 (768)
                      -..++.+..+++.||.|+.|++..++.+.....|. .++..+..+..+++++.+  |.|..++.|++..
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            23355688999999999999999999888877777 555555555566666666  6666666666554

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.06  E-value=0.041  Score=44.32  Aligned_cols=102  Identities=17%  Similarity=0.197  Sum_probs=64.2

Q ss_pred             eeEEEEec---CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214          242 ILDLKFLG---EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC  318 (768)
Q Consensus       242 i~~~~~~~---~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  318 (768)
                      |.++++..   +..+.|++|+.|..|++|+-..  .+..+. ..+.|.++.  .... .. ++.+..+|+|-+|+-... 
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~-e~~~v~~L~--~~~~-~~-F~Y~l~NGTVGvY~~~~R-   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEIT-ETDKVTSLC--SLGG-GR-FAYALANGTVGVYDRSQR-   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEe-cccceEEEE--EcCC-CE-EEEEecCCEEEEEeCcce-
Confidence            44555543   4558999999999999998653  333333 245566664  3333 44 999999999999976432 


Q ss_pred             EEEeeecccCcEEEEEE---ecCCCcEEEEEeCCCeEE
Q 004214          319 CVGVGTGHMGAVGAVAF---SKKLQNFLVSGSSDHTIK  353 (768)
Q Consensus       319 ~~~~~~~~~~~v~~~~~---~~~~~~~l~s~~~dg~i~  353 (768)
                       +...+... .+.++++   ..+|..-|++|-.+|.|-
T Consensus        74 -lWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 -LWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -eeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence             22223222 2444444   334455689998888774

>PHA02713 hypothetical protein; Provisional

Probab=97.04  E-value=0.052  Score=59.69  Aligned_cols=144  Identities=10%  Similarity=0.093  Sum_probs=76.6

Q ss_pred             cCCCEEEEEeCCC-----cEEEEeCCCCce--EEEEeccCCCeEEEEEccCCCEEEEeeCCC------------------
Q 004214          390 PNDSLVCTGSQDR-----TACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQVVITASGDK------------------  444 (768)
Q Consensus       390 ~~~~~l~~~~~dg-----~i~i~d~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~------------------  444 (768)
                      -+|++.+.|+.++     .+..||..+.+-  +..+.........+.  -+|.+.+.|+.++                  
T Consensus       350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence            3678888888764     478899876532  111111111122222  2577777777542                  


Q ss_pred             -----cEEEEeCCCCc--eeEEeecCCCcEEEEEEEeCCCEEEEEeCCC------cEEEEECCC-Ce--EEEEeccCCCc
Q 004214          445 -----TIKIWSISDGS--CLKTFEGHTSSVLRASFLTRGAQIVSCGADG------LVKLWTVRT-GE--CIATYDKHEDK  508 (768)
Q Consensus       445 -----~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~~-~~--~~~~~~~~~~~  508 (768)
                           .+..||..+.+  .+..+..  .........-+|+..+.||.++      .+..||..+ .+  .+..+..+...
T Consensus       428 ~~~~~~ve~YDP~td~W~~v~~m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~  505 (557)
T PHA02713        428 THSSNKVIRYDTVNNIWETLPNFWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA  505 (557)
T ss_pred             ccccceEEEECCCCCeEeecCCCCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence                 46778876543  2222211  1111112234566666676542      467899887 43  33333322222


Q ss_pred             EEEEEEcCCCCEEEEEeCCC--cEEEEEcCCHH
Q 004214          509 IWALAVGKKTEMFATGGSDA--LVNLWHDSTAA  539 (768)
Q Consensus       509 v~~l~~s~~~~~l~s~~~dg--~v~vw~~~~~~  539 (768)
                      .....+  +|...++||.||  .+..||..+.+
T Consensus       506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        506 LHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             ceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            222333  788889999888  56666666543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.00  E-value=0.24  Score=45.38  Aligned_cols=136  Identities=13%  Similarity=0.043  Sum_probs=82.1

Q ss_pred             CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC--------CCeEEEEEccCCCEEE-EeeCCCcEEEEe-
Q 004214          381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK--------RGIWSVEFSPVDQVVI-TASGDKTIKIWS-  450 (768)
Q Consensus       381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~v~~v~~s~~~~~l~-t~~~d~~i~iwd-  450 (768)
                      ...+.-..+|+|++++-.-.|-. -.+....+....-+.+|.        .--+.++|+.+.+.+. +-+.+-+|.-|| 
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~-~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy  187 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFG-DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY  187 (310)
T ss_pred             cccccCccCCCCceeeeeecccc-ccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence            44566778999998443222211 122222222222233332        2235678887765544 455566776677 


Q ss_pred             -CCCCce-----eEEeec---CC-CcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCC
Q 004214          451 -ISDGSC-----LKTFEG---HT-SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK  517 (768)
Q Consensus       451 -~~~~~~-----~~~~~~---~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  517 (768)
                       ..+|..     +..++.   .. ...-.++...+|++.++.-..|+|...|..+|+.+..+.-+...|++++|--.
T Consensus       188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence             555532     222221   11 11123445567888888888899999999999999999988999999999643

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.97  E-value=0.31  Score=50.46  Aligned_cols=92  Identities=11%  Similarity=0.077  Sum_probs=61.5

Q ss_pred             EeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecC----------------
Q 004214          232 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS----------------  295 (768)
Q Consensus       232 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~----------------  295 (768)
                      ...+......+.++...| .+.+.|+..+-|.|.++|+.++..++.++|..+.-..--......                
T Consensus       300 r~~l~D~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~  378 (415)
T PF14655_consen  300 RFGLPDSKREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF  378 (415)
T ss_pred             EEeeccCCceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence            334444455677777775 588999998999999999999998888877655432211001111                


Q ss_pred             CCEEEEEEeCCCeEEEEeCCCceEEEeee
Q 004214          296 GKILIVTGSKDNSVRLWDSESRCCVGVGT  324 (768)
Q Consensus       296 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  324 (768)
                      ...+++-+-.-|.|.||.++++..+..+.
T Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  379 ALFLVIYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             eEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence            12345556778999999999887766554

>PHA02713 hypothetical protein; Provisional

Probab=96.91  E-value=0.074  Score=58.50  Aligned_cols=225  Identities=14%  Similarity=0.140  Sum_probs=108.6

Q ss_pred             cEEEEECCCceeeeeeeCCccce-EEEeeeeecCCCEEEEEEeCC------CeEEEEeCCCceEEEeeecccCcE-EEEE
Q 004214          263 QVQVYDLSSMSCSYVLAGHSEIV-LCLDTCALSSGKILIVTGSKD------NSVRLWDSESRCCVGVGTGHMGAV-GAVA  334 (768)
Q Consensus       263 ~i~i~d~~~~~~~~~~~~~~~~v-~~l~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~v-~~~~  334 (768)
                      .+..||..+..-...-....... .++   ..- ++.+++.|+.+      ..+..||..++.......-....- .+++
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~---a~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~  348 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYAS---AIV-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA  348 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEE---EEE-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE
Confidence            56778877765332111111110 111   122 34456777653      347788988775433222111111 1222


Q ss_pred             EecCCCcEEEEEeCCC-----eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC-------
Q 004214          335 FSKKLQNFLVSGSSDH-----TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-------  402 (768)
Q Consensus       335 ~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-------  402 (768)
                      . -+ ..+.+.||.++     ++..||.....-        ...............+  .-+|++.+.|+.++       
T Consensus       349 ~-~~-g~IYviGG~~~~~~~~sve~Ydp~~~~W--------~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~  416 (557)
T PHA02713        349 V-ID-DTIYAIGGQNGTNVERTIECYTMGDDKW--------KMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSV  416 (557)
T ss_pred             E-EC-CEEEEECCcCCCCCCceEEEEECCCCeE--------EECCCCCcccccccEE--EECCEEEEEeCCCcccccccc
Confidence            2 23 33667777654     477788764311        1100000000111112  23678888887653       


Q ss_pred             ----------------cEEEEeCCCCce--EEEEeccCCCeEEEEEccCCCEEEEeeCC------CcEEEEeCCC-C--c
Q 004214          403 ----------------TACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQVVITASGD------KTIKIWSISD-G--S  455 (768)
Q Consensus       403 ----------------~i~i~d~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~t~~~d------~~i~iwd~~~-~--~  455 (768)
                                      .+..||..+.+-  +..+....... ++ ..-++++.+.|+.+      ..+..||..+ .  .
T Consensus       417 ~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~  494 (557)
T PHA02713        417 HHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GV-VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE  494 (557)
T ss_pred             cccccccccccccccceEEEECCCCCeEeecCCCCcccccC-cE-EEECCEEEEEeCCCCCCccceeEEEecCCCCCCee
Confidence                            467788765432  22221111111 12 22246777777654      2467899876 3  3


Q ss_pred             eeEEeecCCCcEEEEEEEeCCCEEEEEeCCC--cEEEEECCCCeEEEEeccCCC
Q 004214          456 CLKTFEGHTSSVLRASFLTRGAQIVSCGADG--LVKLWTVRTGECIATYDKHED  507 (768)
Q Consensus       456 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~  507 (768)
                      .+..+.........+  .-+|+..++||.+|  .+-.||+.+++-......|..
T Consensus       495 ~~~~m~~~r~~~~~~--~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~  546 (557)
T PHA02713        495 LITTTESRLSALHTI--LHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSN  546 (557)
T ss_pred             EccccCcccccceeE--EECCEEEEEeeecceeehhhcCcccccccchhhhcCC
Confidence            334433222222212  23677888898888  778888887775554444543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.80  E-value=0.13  Score=56.56  Aligned_cols=224  Identities=15%  Similarity=0.164  Sum_probs=116.3

Q ss_pred             CEEEEEEeCC------CeEEEEeCCCceEEEeeec-ccCcEEEEEEecCCCcEEEEEeCC------CeEEEEeCCCCCCC
Q 004214          297 KILIVTGSKD------NSVRLWDSESRCCVGVGTG-HMGAVGAVAFSKKLQNFLVSGSSD------HTIKVWSFDGLSDD  363 (768)
Q Consensus       297 ~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~  363 (768)
                      +.+++.|+.+      ..+..||..++.......- ....-.++++..+  .+.++|+.|      .++..||.....- 
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W-  361 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQW-  361 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC--EEEEEccccCCCcccceEEEecCCCCce-
Confidence            4456777666      3678888887754433222 2222334444443  478888888      3466677654321 


Q ss_pred             CccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCce--EEEEeccCCCeEEEEEccCCCE
Q 004214          364 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-----TACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQV  436 (768)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~--~~~~~~~~~~v~~v~~s~~~~~  436 (768)
                             .............  -...-+|.+.|+|+.||     ++-.||..+.+-  +..+.........+.  -+|.+
T Consensus       362 -------~~~a~M~~~R~~~--~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~i  430 (571)
T KOG4441|consen  362 -------TPVAPMNTKRSDF--GVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKL  430 (571)
T ss_pred             -------eccCCccCccccc--eeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEE
Confidence                   1111011111111  11122788999999997     477788765432  221211111222222  24777


Q ss_pred             EEEeeCCC------cEEEEeCCCCcee--EEeecCCCcEEEEEEEeCCCEEEEEeCCCc-----EEEEECCCCeEEEE--
Q 004214          437 VITASGDK------TIKIWSISDGSCL--KTFEGHTSSVLRASFLTRGAQIVSCGADGL-----VKLWTVRTGECIAT--  501 (768)
Q Consensus       437 l~t~~~d~------~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~--  501 (768)
                      .++|+.++      ++..||..+++-.  ..+........  .-.-++...+.||.||.     |..||..+.+....  
T Consensus       431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~  508 (571)
T KOG4441|consen  431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP  508 (571)
T ss_pred             EEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEccc
Confidence            88887554      4678887665422  22211111111  22346677788887763     77788877654433  


Q ss_pred             eccCCCcEEEEEEcCCCCEEEEEeCCCc-----EEEEEcCCH
Q 004214          502 YDKHEDKIWALAVGKKTEMFATGGSDAL-----VNLWHDSTA  538 (768)
Q Consensus       502 ~~~~~~~v~~l~~s~~~~~l~s~~~dg~-----v~vw~~~~~  538 (768)
                      .......+....+  ++...++||.||.     |..||..+.
T Consensus       509 m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  509 MTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             CccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence            2222222222222  6777788888775     566666554

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.76  E-value=0.18  Score=55.45  Aligned_cols=228  Identities=14%  Similarity=0.101  Sum_probs=114.0

Q ss_pred             CCCEEEEEeCC------CcEEEEECCCceeeeeeeC-CccceEEEeeeeecCCCEEEEEEeCC------CeEEEEeCCCc
Q 004214          251 EEQYLAVATNI------EQVQVYDLSSMSCSYVLAG-HSEIVLCLDTCALSSGKILIVTGSKD------NSVRLWDSESR  317 (768)
Q Consensus       251 ~~~~l~~~~~~------~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~  317 (768)
                      .+.++++|+..      ..+..||..++.-.....- ....-.++   ... ++.+.++|+.|      ..+..||..++
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~---~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGV---AVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccE---EEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence            45566777665      3577888877643322211 11112222   222 33568888888      36778888877


Q ss_pred             eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCe-----EEEEeCCCCCCCCccccccceeeEeeccCCCeEEEE-EccC
Q 004214          318 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT-----IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA-VAPN  391 (768)
Q Consensus       318 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~s~~  391 (768)
                      +......-.... .......-+..+.++|+.||.     +..||.....-..        ..   .........+ ..-+
T Consensus       360 ~W~~~a~M~~~R-~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~--------va---~m~~~r~~~gv~~~~  427 (571)
T KOG4441|consen  360 QWTPVAPMNTKR-SDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP--------VA---PMLTRRSGHGVAVLG  427 (571)
T ss_pred             ceeccCCccCcc-ccceeEEECCEEEEEeccccccccccEEEecCCCCcccc--------cC---CCCcceeeeEEEEEC
Confidence            654422211111 111111212447888888865     5566655432111        11   0111112222 2237


Q ss_pred             CCEEEEEeCCC------cEEEEeCCCCc--eEEEEeccCCCeEEEEEccCCCEEEEeeCCCc-----EEEEeCCCCceeE
Q 004214          392 DSLVCTGSQDR------TACVWRLPDLV--SVVTFRGHKRGIWSVEFSPVDQVVITASGDKT-----IKIWSISDGSCLK  458 (768)
Q Consensus       392 ~~~l~~~~~dg------~i~i~d~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~-----i~iwd~~~~~~~~  458 (768)
                      |.+.++|+.++      ++..||..+..  .+..+...........  -++.+.+.|+.|+.     |..||..+.+-..
T Consensus       428 g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~  505 (571)
T KOG4441|consen  428 GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQWTM  505 (571)
T ss_pred             CEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence            88888888665      46778876653  2222222222222222  24778888887763     6778876554322


Q ss_pred             EeecCCCcEEEEEE-EeCCCEEEEEeCCC-----cEEEEECCCCe
Q 004214          459 TFEGHTSSVLRASF-LTRGAQIVSCGADG-----LVKLWTVRTGE  497 (768)
Q Consensus       459 ~~~~~~~~v~~~~~-s~~~~~l~s~~~dg-----~i~iwd~~~~~  497 (768)
                      . ..-..+...+.. .-++...++|+.||     +|-.||..+.+
T Consensus       506 v-~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  506 V-APMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             c-ccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence            2 111112222222 23456667777776     45666665544

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.74  E-value=0.36  Score=45.72  Aligned_cols=231  Identities=16%  Similarity=0.190  Sum_probs=133.9

Q ss_pred             cCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCe-EEEEeCCCCCCCCccccccce
Q 004214          294 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT-IKVWSFDGLSDDAEQPMNLKA  372 (768)
Q Consensus       294 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~  372 (768)
                      .++...+++.+.+|.+.-          ... -...-..++++|..+.-++.+-.-|+ ..++|..........  ....
T Consensus        45 ~dgs~g~a~~~eaGk~v~----------~~~-lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~--~s~~  111 (366)
T COG3490          45 RDGSFGAATLSEAGKIVF----------ATA-LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTL--VSQE  111 (366)
T ss_pred             cCCceeEEEEccCCceee----------eee-cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEE--eccc
Confidence            455555666666665532          110 11223356677766655666655555 356777654322111  1111


Q ss_pred             eeEeeccCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCC-ceEEEEeccCCCeEEEEEccCCCEEEEeeCC---
Q 004214          373 KAVVAAHGKDINSLAVAPNDSLVCTGSQD-----RTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGD---  443 (768)
Q Consensus       373 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d---  443 (768)
                      ..-+.+|      -.|||||.+|...-.|     |.|-|||.+.+ ..+..+..|.-....+.+.+||+.++.+...   
T Consensus       112 ~RHfyGH------Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIet  185 (366)
T COG3490         112 GRHFYGH------GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIET  185 (366)
T ss_pred             Cceeecc------cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceec
Confidence            1222334      3689999998876443     67999998754 5677888898888999999999999887541   


Q ss_pred             ---------------CcEEEEeCCCCceeEEe--e--cCCCcEEEEEEEeCCCEEEEEeCCCc-----EEEEECCCCeEE
Q 004214          444 ---------------KTIKIWSISDGSCLKTF--E--GHTSSVLRASFLTRGAQIVSCGADGL-----VKLWTVRTGECI  499 (768)
Q Consensus       444 ---------------~~i~iwd~~~~~~~~~~--~--~~~~~v~~~~~s~~~~~l~s~~~dg~-----i~iwd~~~~~~~  499 (768)
                                     -++.+.|..+|.++.+.  .  -+.-+|..+..-+||+.++-+-..|.     -.+=-...|+.+
T Consensus       186 hpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l  265 (366)
T COG3490         186 HPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPL  265 (366)
T ss_pred             ccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcC
Confidence                           12334444455544332  2  34456777888788876665544331     111111234444


Q ss_pred             EEecc-------CCCcEEEEEEcCCCCEEEEEeC-CCcEEEEEcCCHHHHHH
Q 004214          500 ATYDK-------HEDKIWALAVGKKTEMFATGGS-DALVNLWHDSTAAEREE  543 (768)
Q Consensus       500 ~~~~~-------~~~~v~~l~~s~~~~~l~s~~~-dg~v~vw~~~~~~~~~~  543 (768)
                      .-+..       ...-|-+++.+.+..+++..+- .+...+||..++....+
T Consensus       266 ~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~  317 (366)
T COG3490         266 EFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE  317 (366)
T ss_pred             cccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence            44332       2234667888776666665554 44578899998876543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.72  E-value=0.0036  Score=56.81  Aligned_cols=102  Identities=17%  Similarity=0.269  Sum_probs=68.0

Q ss_pred             EEeecCCCcEEEEECCC-CEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCcc-ceeEEE
Q 004214            3 ALLEGADRKVLVWDVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-SRVTSM   80 (768)
Q Consensus         3 latg~~dg~i~vwd~~~-~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~-~~V~~l   80 (768)
                      +++|+.+|.|.+|++.. |........-...|.++.-.-+ ...+..+++.||.|+-|++..++.+.....|. .++..+
T Consensus        73 ~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~-~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~  151 (238)
T KOG2444|consen   73 LMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGR-DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL  151 (238)
T ss_pred             EEeecccceEEEecCCccchHHHhhhcccccceecccccc-ccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence            67899999999999852 1111112222333444332222 22358899999999999999999988888787 566666


Q ss_pred             EEcCCCCEEEEE--eCCCeEEEEECCC
Q 004214           81 AITSDGSTLISA--GRDKVVNLWDLRD  105 (768)
Q Consensus        81 ~fs~d~~~L~s~--~~dg~i~vWd~~~  105 (768)
                      ..+..+..++++  |.|..++.|++..
T Consensus       152 ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  152 IVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             EEecCCceEEeeccccchhhhhcchhh
Confidence            666666666666  6677777777754

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.69  E-value=1.1  Score=47.59  Aligned_cols=74  Identities=23%  Similarity=0.275  Sum_probs=47.3

Q ss_pred             cEEEEEEeeCCCccEEEEEeCCC----cEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeC-----------CC
Q 004214           32 VVSSILFHPDTDKSLLFSGSDDA----TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR-----------DK   96 (768)
Q Consensus        32 ~V~~l~~spd~~~~~l~sg~~dg----~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~-----------dg   96 (768)
                      .+...++||||++ ++++-+..|    .|++.|+.+|+.+...- .......+.|.+|++.|+-...           ..
T Consensus       125 ~~~~~~~Spdg~~-la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  125 SLGGFSVSPDGKR-LAYSLSDGGSEWYTLRVFDLETGKFLPDGI-ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEEETTTSSE-EEEEEEETTSSEEEEEEEETTTTEEEEEEE-EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             EeeeeeECCCCCE-EEEEecCCCCceEEEEEEECCCCcCcCCcc-cccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            4446788999987 223334444    49999999998765321 1122234999999988776543           23


Q ss_pred             eEEEEECCCCe
Q 004214           97 VVNLWDLRDYS  107 (768)
Q Consensus        97 ~i~vWd~~~~~  107 (768)
                      .|..|.+.+..
T Consensus       203 ~v~~~~~gt~~  213 (414)
T PF02897_consen  203 QVYRHKLGTPQ  213 (414)
T ss_dssp             EEEEEETTS-G
T ss_pred             EEEEEECCCCh
Confidence            47778876654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.64  E-value=0.0076  Score=66.65  Aligned_cols=97  Identities=13%  Similarity=0.252  Sum_probs=75.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCC-ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEE
Q 004214          391 NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLR  469 (768)
Q Consensus       391 ~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  469 (768)
                      .+..++.|+..|.+...|.... .+...=..-.++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+.-|..+.+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            4567888998899988887653 221221224579999999999999999999999999999999999998877777666


Q ss_pred             EEE---EeCCCEEEEEeCCCc
Q 004214          470 ASF---LTRGAQIVSCGADGL  487 (768)
Q Consensus       470 ~~~---s~~~~~l~s~~~dg~  487 (768)
                      +-+   ..++..++++...|.
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc
Confidence            554   345667888888785

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.61  E-value=0.72  Score=44.92  Aligned_cols=147  Identities=14%  Similarity=0.099  Sum_probs=88.7

Q ss_pred             cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 004214          329 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR  408 (768)
Q Consensus       329 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d  408 (768)
                      .+.+.++++++..+.+....++.-.+|-......         .....  ....+..-.|++++...++...+....++.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~---------~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~   93 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP---------VRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVR   93 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc---------ceeec--cCCccccccccCCCCEEEEEcCCCceEEEE
Confidence            6888999999886555553333334443332211         11111  234677889999988877777666667664


Q ss_pred             -CCCCceE-EEEecc--CCCeEEEEEccCCCEEEEee---CCCcEEEEeCC---CC------ceeEEeecCCCcEEEEEE
Q 004214          409 -LPDLVSV-VTFRGH--KRGIWSVEFSPVDQVVITAS---GDKTIKIWSIS---DG------SCLKTFEGHTSSVLRASF  472 (768)
Q Consensus       409 -~~~~~~~-~~~~~~--~~~v~~v~~s~~~~~l~t~~---~d~~i~iwd~~---~~------~~~~~~~~~~~~v~~~~~  472 (768)
                       ..++... ..+...  ...|+++.+||||..++...   .++.|.+--+.   .+      ..+.........++.+.|
T Consensus        94 ~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W  173 (253)
T PF10647_consen   94 DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW  173 (253)
T ss_pred             ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeee
Confidence             3333221 112211  12899999999998877665   34777776543   23      112222234568899999


Q ss_pred             EeCCCEEEEEeCCC
Q 004214          473 LTRGAQIVSCGADG  486 (768)
Q Consensus       473 s~~~~~l~s~~~dg  486 (768)
                      .+++.+++.+...+
T Consensus       174 ~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  174 SDDSTLVVLGRSAG  187 (253)
T ss_pred             cCCCEEEEEeCCCC
Confidence            99998877766544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.50  E-value=0.8  Score=43.49  Aligned_cols=244  Identities=14%  Similarity=0.126  Sum_probs=134.8

Q ss_pred             eeEEEEecCCCCEEEEEeCCCc-EEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEe----CCCeEEEEeCCC
Q 004214          242 ILDLKFLGEEEQYLAVATNIEQ-VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS----KDNSVRLWDSES  316 (768)
Q Consensus       242 i~~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~----~dg~i~iwd~~~  316 (768)
                      -..++|+|....-++.+-.-|+ ..++|....+...++...++.-.-=..++++++..+.+|-.    .-|.|-+||...
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence            3457777777777888777665 45689888877666544333222222337777776444321    237899999875


Q ss_pred             c-eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEE--------eCCCCCCCCc----cccccceeeEee--ccCC
Q 004214          317 R-CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW--------SFDGLSDDAE----QPMNLKAKAVVA--AHGK  381 (768)
Q Consensus       317 ~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw--------d~~~~~~~~~----~~~~~~~~~~~~--~~~~  381 (768)
                      + +.+..+..|.-.-..+.+.+||..++++.+   -|..-        +++.++....    ..-....+.++.  .+..
T Consensus       150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG---GIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l  226 (366)
T COG3490         150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANG---GIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL  226 (366)
T ss_pred             ccceecccccCCcCcceeEEecCCcEEEEeCC---ceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence            3 456677778777788999999885444332   23332        2221111000    000111111122  3455


Q ss_pred             CeEEEEEccCCCEEEEEeCCCcE-----EEEeCCCCceEEEEe-------ccCCCeEEEEEccCCCEEEEee-CCCcEEE
Q 004214          382 DINSLAVAPNDSLVCTGSQDRTA-----CVWRLPDLVSVVTFR-------GHKRGIWSVEFSPVDQVVITAS-GDKTIKI  448 (768)
Q Consensus       382 ~i~~~~~s~~~~~l~~~~~dg~i-----~i~d~~~~~~~~~~~-------~~~~~v~~v~~s~~~~~l~t~~-~d~~i~i  448 (768)
                      .|..++..+||..++-+-..|.-     .+=-...++++.-+.       .....|-+++.+.+..+++..+ ..+...+
T Consensus       227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi  306 (366)
T COG3490         227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI  306 (366)
T ss_pred             ceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence            68888988888877665544321     111112223332222       1234577888887665555544 4456779


Q ss_pred             EeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214          449 WSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT  492 (768)
Q Consensus       449 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  492 (768)
                      ||..+|..+..-.-..  .  .-..+...-++..+.+|.+.++.
T Consensus       307 ~da~tG~vv~~a~l~d--a--aGva~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         307 WDAATGAVVSEAALPD--A--AGVAAAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             EEcCCCcEEecccccc--c--ccceeccCceEEecCCceEEecc
Confidence            9999998765432111  1  11223344455666678777763

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=96.45  E-value=1.9  Score=47.21  Aligned_cols=403  Identities=13%  Similarity=0.142  Sum_probs=173.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCC-------Ceeeeeeec--ceeEeeEEecC--CCCCccccccccchhhhhcc
Q 004214           77 VTSMAITSDGSTLISAGRDKVVNLWDLRD-------YSCKLTVPT--YEMVEAVCAIP--PGSAFDSFLSSYNQQTIKKK  145 (768)
Q Consensus        77 V~~l~fs~d~~~L~s~~~dg~i~vWd~~~-------~~~~~~~~~--~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~  145 (768)
                      -..++..|.|+.++.+..++.+.++-+..       .......+.  ...+..++|..  .+.....             
T Consensus        46 G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~-------------  112 (504)
T PF10433_consen   46 GQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPT-------------  112 (504)
T ss_dssp             --EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-E-------------
T ss_pred             CcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCce-------------
Confidence            45688999999999999999999999887       111111222  44567778876  1111000             


Q ss_pred             cCCcceEEEEeeCC--cEEEE--EEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeecc
Q 004214          146 RRSLEIHFITVGER--GIVRM--WNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE  221 (768)
Q Consensus       146 ~~~~~~~~~~~~~~--g~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~  221 (768)
                           ..++-....  ..+..  |+...+-..............  ........+.-.|.+...+.++.++.+.+-+...
T Consensus       113 -----la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~--~~~~~p~~LIPlp~~~ggllV~~~~~i~y~~~~~  185 (504)
T PF10433_consen  113 -----LAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLP--NEDELPSFLIPLPNPPGGLLVGGENIIIYKNHLI  185 (504)
T ss_dssp             -----EEEEEEETT-EEEEEEEE--------EETTTTEEEE--E--EEE-TTEEEEEE-TTT-SEEEEESSEEEEEE---
T ss_pred             -----EEEEEEEecccceeEEEeeecccccceeeeecccccccc--ccCCCccEEEEcCCCCcEEEEECCEEEEEecccc
Confidence                 011111121  12333  444443111111111110000  0001113344445555555566666555543222


Q ss_pred             CcccceeeEEEeeecccCCceeEEEE------ecCCCCEEEEEeCCCcEEEEECCCcee--eeeeeCC-ccceEEEeeee
Q 004214          222 VPEKKMELILSKRLVGYNEEILDLKF------LGEEEQYLAVATNIEQVQVYDLSSMSC--SYVLAGH-SEIVLCLDTCA  292 (768)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~-~~~v~~l~~~~  292 (768)
                      ...................-+.....      ...+...++.+..+|.+....+.....  ....-+. .....++.  +
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~--~  263 (504)
T PF10433_consen  186 GSGDYSFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLT--Y  263 (504)
T ss_dssp             ---TTEEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEE--E
T ss_pred             cccccccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEE--E
Confidence            11100011111000111222233322      345678899999999999987765441  1122222 34444554  4


Q ss_pred             ecCCCEEEEEEeCC--CeEEEEeCCCceEEEeeecccCcEEEEEEecC---CCc------EEEEEe---CCCeEEEEeCC
Q 004214          293 LSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK---LQN------FLVSGS---SDHTIKVWSFD  358 (768)
Q Consensus       293 ~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~------~l~s~~---~dg~i~iwd~~  358 (768)
                      ..+++.+++.|+.-  +.+..|....-+.+..+. .-+||..+++.+.   +..      .+++++   .+|.+++..-.
T Consensus       264 l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~G  342 (504)
T PF10433_consen  264 LKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNG  342 (504)
T ss_dssp             ESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEES
T ss_pred             EcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEecc
Confidence            44443346667654  455556644445555544 4578888888532   221      345554   46788887532


Q ss_pred             CCCCCCccccccceeeEeecc--CCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCC---CCceEEEEe--ccC---CCeEE
Q 004214          359 GLSDDAEQPMNLKAKAVVAAH--GKDINSLAVAP-NDSLVCTGSQDRTACVWRLP---DLVSVVTFR--GHK---RGIWS  427 (768)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~--~~~---~~v~~  427 (768)
                      -.       .. .........  -..+..+.... ++.+++.+..+. -+++.+.   ..+.+..+.  +..   ..+.+
T Consensus       343 i~-------~~-~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~  413 (504)
T PF10433_consen  343 IG-------IE-GLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAA  413 (504)
T ss_dssp             BE-------EE---EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSE-EEEEEES----SSEEEEE---TS-SSS-EEEE
T ss_pred             CC-------ce-eeeeeccCCCCceEEEEeeecCCCceEEEEEcCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEE
Confidence            10       00 001111111  12233333222 245676666554 3455443   233332221  111   12222


Q ss_pred             EEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC-CCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec---
Q 004214          428 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH-TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD---  503 (768)
Q Consensus       428 v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---  503 (768)
                      -.+.  +..++=... ..|++.+...++....+... ...|.+.+  -++.+++.+..+|.+.++.+..........   
T Consensus       414 ~~~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~--~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~  488 (504)
T PF10433_consen  414 GNVG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAAS--INDPQVLVALSGGELVYFELDDNKISVSDNDET  488 (504)
T ss_dssp             EEET--TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEE--ESSSEEEEEE-TTEEEEEEEETTEEEEEEE---
T ss_pred             EEcC--CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEE--ECCCEEEEEEeCCcEEEEEEECCceeeeeeccc
Confidence            2222  334443333 45888888777777666433 33443333  345677777778999999988776643322   


Q ss_pred             --cCCCcEEEEEEcC
Q 004214          504 --KHEDKIWALAVGK  516 (768)
Q Consensus       504 --~~~~~v~~l~~s~  516 (768)
                        .....|.|+...|
T Consensus       489 ~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  489 ILELDNEISCLSIEP  503 (504)
T ss_dssp             -EE-SS-EEEEE---
T ss_pred             cccCCCceEEEEeCC
Confidence              1467788888776

...

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.40  E-value=1.5  Score=45.58  Aligned_cols=154  Identities=16%  Similarity=0.204  Sum_probs=86.6

Q ss_pred             eEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccC-CCceEEEEecCeEEEEeeccCccc----
Q 004214          151 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPS-NQGLLCVTADQQLLLYTTVEVPEK----  225 (768)
Q Consensus       151 ~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~~~~~~~~~~~----  225 (768)
                      ..+++|+..|.+++|++..+...   ..+.........+--.+....|.+. ....+++-.-..+.+|.+......    
T Consensus        38 d~IivGS~~G~LrIy~P~~~~~~---~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   38 DKIIVGSYSGILRIYDPSGNEFQ---PEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             cEEEEeccccEEEEEccCCCCCC---CccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence            48999999999999999554211   0111111111111122222233333 445677788888888888443221    


Q ss_pred             ---ceeeEEEeeecccCCceeEEEE---ecCC-CCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCE
Q 004214          226 ---KMELILSKRLVGYNEEILDLKF---LGEE-EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI  298 (768)
Q Consensus       226 ---~~~~~~~~~~~~~~~~i~~~~~---~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~  298 (768)
                         ...+.....+   ......+++   -... ..++++-+-||.+.+|+-+.......+++ .--..++.  +.+....
T Consensus       115 ~~~~L~~~yeh~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~--Y~~~tDs  188 (418)
T PF14727_consen  115 NQYQLELIYEHSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLC--YCPRTDS  188 (418)
T ss_pred             cEEEEEEEEEEec---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeE--EeecCCE
Confidence               1122222222   222333333   2222 57899999999999999888776655554 22222333  3444554


Q ss_pred             EEEEEeCCCeEEEEeC
Q 004214          299 LIVTGSKDNSVRLWDS  314 (768)
Q Consensus       299 ~l~~~~~dg~i~iwd~  314 (768)
                       |++++.+..+..|..
T Consensus       189 -fvt~sss~~l~~Yky  203 (418)
T PF14727_consen  189 -FVTASSSWTLECYKY  203 (418)
T ss_pred             -EEEecCceeEEEecH
Confidence             888888888888864

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.23  E-value=0.068  Score=54.78  Aligned_cols=137  Identities=12%  Similarity=0.089  Sum_probs=93.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCC-------EEEEeeCCCcEEEEeCCCCc--eeEEeecCC
Q 004214          394 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ-------VVITASGDKTIKIWSISDGS--CLKTFEGHT  464 (768)
Q Consensus       394 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~-------~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~  464 (768)
                      ++..+.....++-.|++.|+.+....-+.. |+-+.+.|+.+       --+.|-.|..|.-||.+-..  .+..-++|.
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            344455556788899999999999887666 77788888653       12346677889999986322  232333332


Q ss_pred             ----CcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEE-EEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214          465 ----SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI-ATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  534 (768)
Q Consensus       465 ----~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~  534 (768)
                          ....|.+-..+| ++++|+.+|.|++||- .+... ..+.+...+|..+..+.+|.+|++.+..- +.+-+
T Consensus       427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ty-LlLi~  498 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTY-LLLID  498 (644)
T ss_pred             cccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccE-EEEEE
Confidence                123333333444 8999999999999996 55433 34567888999999999999988777554 44433

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.22  E-value=0.31  Score=47.46  Aligned_cols=145  Identities=16%  Similarity=0.104  Sum_probs=92.3

Q ss_pred             CeEEEEEccCCCEEEEEe---CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEe-CCCCcee
Q 004214          382 DINSLAVAPNDSLVCTGS---QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS-ISDGSCL  457 (768)
Q Consensus       382 ~i~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd-~~~~~~~  457 (768)
                      .+.+.++++++..++...   ....++++..  +....... ....++.-.|++++...+....+...+++. ..++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            678999999999887766   2234555543  33222221 233778889999988888777777777774 3333322


Q ss_pred             -EEeec--CCCcEEEEEEEeCCCEEEEEe---CCCcEEEEECC---CC------eEEEEeccCCCcEEEEEEcCCCCEEE
Q 004214          458 -KTFEG--HTSSVLRASFLTRGAQIVSCG---ADGLVKLWTVR---TG------ECIATYDKHEDKIWALAVGKKTEMFA  522 (768)
Q Consensus       458 -~~~~~--~~~~v~~~~~s~~~~~l~s~~---~dg~i~iwd~~---~~------~~~~~~~~~~~~v~~l~~s~~~~~l~  522 (768)
                       ..+..  -...|+.+.+||||..++...   .++.|.+=-+.   .+      ..+.........+.+++|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence             12221  112899999999999887665   34677776543   23      12222223356789999999998877


Q ss_pred             EEeCCCc
Q 004214          523 TGGSDAL  529 (768)
Q Consensus       523 s~~~dg~  529 (768)
                      .+...+.
T Consensus       182 ~~~~~~~  188 (253)
T PF10647_consen  182 LGRSAGG  188 (253)
T ss_pred             EeCCCCC
Confidence            7665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.19  E-value=2.1  Score=48.66  Aligned_cols=207  Identities=12%  Similarity=0.064  Sum_probs=115.1

Q ss_pred             CCEEEEEEeCCCeEEEEeCCCceEEEeeecccCc--------EEEEEEecC---------------CCcEEEEEeCCCeE
Q 004214          296 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA--------VGAVAFSKK---------------LQNFLVSGSSDHTI  352 (768)
Q Consensus       296 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~~---------------~~~~l~s~~~dg~i  352 (768)
                      ++. ++.++.++.|.-.|..+|+.+..+......        ...+++...               ....++.++.|+.+
T Consensus       194 gg~-lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       194 GDT-LYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             CCE-EEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            444 666777888999999988887776533211        112222211               12257788889998


Q ss_pred             EEEeCCCCCCCCccccccceee--EeeccCCCeEEEEEcc--CCCEEEEEeC----------CCcEEEEeCCCCceEEEE
Q 004214          353 KVWSFDGLSDDAEQPMNLKAKA--VVAAHGKDINSLAVAP--NDSLVCTGSQ----------DRTACVWRLPDLVSVVTF  418 (768)
Q Consensus       353 ~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~s~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~  418 (768)
                      .-.|..++..............  ........-..+.-+|  .+..+++|+.          +|.|+-+|..+++.+-.+
T Consensus       273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            8888876643211100000000  0000000001112222  2345666643          688999999999988776


Q ss_pred             ecc---------C--------CCe-EEEEEccCCCEEEEeeC------------------CCcEEEEeCCCCceeEEeec
Q 004214          419 RGH---------K--------RGI-WSVEFSPVDQVVITASG------------------DKTIKIWSISDGSCLKTFEG  462 (768)
Q Consensus       419 ~~~---------~--------~~v-~~v~~s~~~~~l~t~~~------------------d~~i~iwd~~~~~~~~~~~~  462 (768)
                      ..-         .        ..+ ..+++.|...+++.+..                  .+.|.-.|.++|+..-.++.
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            521         0        011 23445555444444221                  24566678888888877764


Q ss_pred             CCCc---------EEEEEEEe-CCC---EEEEEeCCCcEEEEECCCCeEEEEec
Q 004214          463 HTSS---------VLRASFLT-RGA---QIVSCGADGLVKLWTVRTGECIATYD  503 (768)
Q Consensus       463 ~~~~---------v~~~~~s~-~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~  503 (768)
                      ....         ..-+.+.. +|+   .++.++.+|.+.++|.++|+.+....
T Consensus       433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            2111         11122322 563   78999999999999999999887664

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.17  E-value=1.3  Score=42.43  Aligned_cols=181  Identities=13%  Similarity=0.107  Sum_probs=111.1

Q ss_pred             EEEEEEecCCCcEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 004214          330 VGAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW  407 (768)
Q Consensus       330 v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~  407 (768)
                      ...+.|..++. ++-+.+.-|  .|+.+|+.++.....         ......----.++.. ++++....-.++...+|
T Consensus        47 TQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~---------~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~y  115 (264)
T PF05096_consen   47 TQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQS---------VPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVY  115 (264)
T ss_dssp             EEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEEEE---------EE-TTT--EEEEEEE-TTEEEEEESSSSEEEEE
T ss_pred             CccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEE---------EECCccccceeEEEE-CCEEEEEEecCCeEEEE
Confidence            45677766644 667777666  688888876531111         111111111233333 34455555678999999


Q ss_pred             eCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC-----CcEEEEEEEeCCCEEEEE
Q 004214          408 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIVSC  482 (768)
Q Consensus       408 d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~s~  482 (768)
                      |..+.+.+.++.- ...=+.++  .+++.|+.+.....++++|..+.+..+++.-..     ..++-+-|. +|...|=.
T Consensus       116 d~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANV  191 (264)
T PF05096_consen  116 DPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANV  191 (264)
T ss_dssp             ETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEE
T ss_pred             ccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEe
Confidence            9999999988863 45667777  557778887778899999999988887776322     234556664 66666656


Q ss_pred             eCCCcEEEEECCCCeEEEEecc------------C---CCcEEEEEEcCCCCEEEEEe
Q 004214          483 GADGLVKLWTVRTGECIATYDK------------H---EDKIWALAVGKKTEMFATGG  525 (768)
Q Consensus       483 ~~dg~i~iwd~~~~~~~~~~~~------------~---~~~v~~l~~s~~~~~l~s~~  525 (768)
                      -....|...|..+|+++..++.            +   .+-.+.+|+.|....|...|
T Consensus       192 W~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  192 WQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            5667788889999999887631            1   24478999998766655544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.16  E-value=0.65  Score=44.48  Aligned_cols=171  Identities=15%  Similarity=0.186  Sum_probs=105.3

Q ss_pred             EEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecC-ccceeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004214           26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK-HFSRVTSMAITSDGSTLISAGRDKVVNLWDLR  104 (768)
Q Consensus        26 l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~-h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~  104 (768)
                      +.|-...|+++.|+|+.+.  |++-...+.-.||=...|+.+.++.- .-+..-.|.+..+|++.++--+++.+.+..+.
T Consensus        81 i~g~~~nvS~LTynp~~rt--LFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          81 ILGETANVSSLTYNPDTRT--LFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             cccccccccceeeCCCcce--EEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence            3455666999999999887  77777888888888889999988752 12235567888889888888889999888876


Q ss_pred             CCeeeeeeec-----------ceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCce-e
Q 004214          105 DYSCKLTVPT-----------YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC-L  172 (768)
Q Consensus       105 ~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~-~  172 (768)
                      .......+..           ....+.+++.|...                       .|+.+-+..-+.++....+. .
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-----------------------~l~~aKEr~P~~I~~~~~~~~~  215 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-----------------------RLFVAKERNPIGIFEVTQSPSS  215 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCCc-----------------------eEEEEEccCCcEEEEEecCCcc
Confidence            6543322211           23356666666654                       56666666666666655331 1


Q ss_pred             eeecCCceeecccccCcccceeEEEEccCCCceEEEEe-cCeEEEEeeccC
Q 004214          173 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA-DQQLLLYTTVEV  222 (768)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~~~~~~~~  222 (768)
                      ..... ........+-....+..+.+.+..+.+++.+. ++.+...+....
T Consensus       216 l~~~~-~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         216 LSVHA-SLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             ccccc-ccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence            00000 00000111111245566777777777766664 455555555544

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.99  E-value=0.82  Score=46.74  Aligned_cols=193  Identities=11%  Similarity=0.117  Sum_probs=94.4

Q ss_pred             CcEEEEEe-CCCeEEEEeCCCCCCCCccccccceeeEeec---cC----CCeEEEEEccCCCEEEEEeC--C----CcEE
Q 004214          340 QNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA---HG----KDINSLAVAPNDSLVCTGSQ--D----RTAC  405 (768)
Q Consensus       340 ~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~----~~i~~~~~s~~~~~l~~~~~--d----g~i~  405 (768)
                      +++|+..+ ..+.|.+.|+......+.      ...+...   +.    .....+-.-|+|++++++-.  +    |-+.
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~------l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~  160 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPR------LHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFV  160 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-E------EEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEE
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCc------eEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEE
Confidence            44666665 778899999875432221      1111111   10    11223444578888877532  2    4588


Q ss_pred             EEeCCCCceEEEEeccCC---CeEEEEEccCCCEEEEeeC--------------------CCcEEEEeCCCCceeEEeec
Q 004214          406 VWRLPDLVSVVTFRGHKR---GIWSVEFSPVDQVVITASG--------------------DKTIKIWSISDGSCLKTFEG  462 (768)
Q Consensus       406 i~d~~~~~~~~~~~~~~~---~v~~v~~s~~~~~l~t~~~--------------------d~~i~iwd~~~~~~~~~~~~  462 (768)
                      ++|-++.+..........   --..+-|.|..+.++|+..                    -.++.+||+.+.+.++++.-
T Consensus       161 llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL  240 (461)
T PF05694_consen  161 LLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL  240 (461)
T ss_dssp             EE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred             EEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence            888888877776654322   3456778888888887642                    35799999999999999874


Q ss_pred             CC--CcEEEEEEEeC--CCEEEEEe-CCCcEEEE-ECCCCe----EEEEeccC-----------------CCcEEEEEEc
Q 004214          463 HT--SSVLRASFLTR--GAQIVSCG-ADGLVKLW-TVRTGE----CIATYDKH-----------------EDKIWALAVG  515 (768)
Q Consensus       463 ~~--~~v~~~~~s~~--~~~l~s~~-~dg~i~iw-d~~~~~----~~~~~~~~-----------------~~~v~~l~~s  515 (768)
                      -.  .....+.|..+  ..+=++++ -.++|..| ....++    .+..+...                 ..-|+.+.+|
T Consensus       241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS  320 (461)
T PF05694_consen  241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS  320 (461)
T ss_dssp             -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred             CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence            33  24567777654  44433333 33444444 334443    22233211                 2447899999


Q ss_pred             CCCCEEEEEe-CCCcEEEEEcCCH
Q 004214          516 KKTEMFATGG-SDALVNLWHDSTA  538 (768)
Q Consensus       516 ~~~~~l~s~~-~dg~v~vw~~~~~  538 (768)
                      .|.++|.... .+|.|+.||+..+
T Consensus       321 lDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  321 LDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             cCCCEEEEEcccCCcEEEEecCCC
Confidence            9999987665 7999999999874

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.81  E-value=0.0071  Score=65.37  Aligned_cols=188  Identities=18%  Similarity=0.271  Sum_probs=109.8

Q ss_pred             CCeEEEEeCCCceE-EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeE
Q 004214          306 DNSVRLWDSESRCC-VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN  384 (768)
Q Consensus       306 dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~  384 (768)
                      .+.+++-+..+... -...++..+.+..+.|.......+.  -.-|.+.+|+++.......   .............++.
T Consensus       110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq---~~l~v~~~~p~gs~~~  184 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQ---PQLEVTPITPYGSDPQ  184 (1283)
T ss_pred             hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccc---cceEEeecCcCCCCcc
Confidence            34566655443221 1234556677777777432211122  2336788999875321111   1112222233344555


Q ss_pred             EEEEcc---CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEE-----------EEccCCCEEEEeeCCCcEEEEe
Q 004214          385 SLAVAP---NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV-----------EFSPVDQVVITASGDKTIKIWS  450 (768)
Q Consensus       385 ~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v-----------~~s~~~~~l~t~~~d~~i~iwd  450 (768)
                      -+.|.|   +.-++..+..++++++........ ..+.+|...++.+           ..||||..++.++.||.++.|.
T Consensus       185 ~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q  263 (1283)
T KOG1916|consen  185 LVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ  263 (1283)
T ss_pred             eeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence            566665   667888888899998887655432 2344576655543           3689999999999999988887


Q ss_pred             CC-----CCceeEEeecCCC-cEEEEEEEeCC---------CEEEEEeC-CCcEEEEECCCCeEE
Q 004214          451 IS-----DGSCLKTFEGHTS-SVLRASFLTRG---------AQIVSCGA-DGLVKLWTVRTGECI  499 (768)
Q Consensus       451 ~~-----~~~~~~~~~~~~~-~v~~~~~s~~~---------~~l~s~~~-dg~i~iwd~~~~~~~  499 (768)
                      +.     .-.|+...+.|++ +-.|..|..+.         .++++++. +..+++|.....+|+
T Consensus       264 iyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  264 IYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            53     3457777888874 33333333221         13455554 457999988877776

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.78  E-value=0.11  Score=58.24  Aligned_cols=144  Identities=11%  Similarity=0.080  Sum_probs=93.7

Q ss_pred             CCCeEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceEE-----EEecc------CCCeEEEEEccCC-CEEEEeeCCCc
Q 004214          380 GKDINSLAVAPNDSLVCTGS--QDRTACVWRLPDLVSVV-----TFRGH------KRGIWSVEFSPVD-QVVITASGDKT  445 (768)
Q Consensus       380 ~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~-----~~~~~------~~~v~~v~~s~~~-~~l~t~~~d~~  445 (768)
                      ..++..+...+|+...++..  .+-.|..||+++.....     -+..|      ..-..++.|.|.- -..++...|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            34566777777866555443  33378999987542211     11112      2234677888853 33556677899


Q ss_pred             EEEEeCCCCce-eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc----CCCcEEEEEEcCCCCE
Q 004214          446 IKIWSISDGSC-LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK----HEDKIWALAVGKKTEM  520 (768)
Q Consensus       446 i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~l~~s~~~~~  520 (768)
                      |++..+..... +.++ ......++++|+|.|++++.|-..|++.-|.. +++....+..    ....|.+++|-....+
T Consensus       180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~ef  257 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEF  257 (1405)
T ss_pred             hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeE
Confidence            98887754332 2222 25667899999999999999999999998864 4444444432    2467999999887777


Q ss_pred             EEEEe
Q 004214          521 FATGG  525 (768)
Q Consensus       521 l~s~~  525 (768)
                      +++-+
T Consensus       258 lvvy~  262 (1405)
T KOG3630|consen  258 LVVYG  262 (1405)
T ss_pred             EEEec
Confidence            76543

>PHA03098 kelch-like protein; Provisional

Probab=95.74  E-value=0.74  Score=50.95  Aligned_cols=185  Identities=11%  Similarity=0.119  Sum_probs=86.4

Q ss_pred             CEEEEEEeCCC------eEEEEeCCCceEEEeeecc--cCcEEEEEEecCCCcEEEEEeCC-----CeEEEEeCCCCCCC
Q 004214          297 KILIVTGSKDN------SVRLWDSESRCCVGVGTGH--MGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDD  363 (768)
Q Consensus       297 ~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~  363 (768)
                      +.+++.|+.++      .+..||..+++........  ......+.  -+ ..+++.||.+     ..+..||.....-.
T Consensus       295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FN-NRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--EC-CEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            34466666442      5778888877654332211  11112222  23 3467777765     34666776543211


Q ss_pred             CccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC------CcEEEEeCCCCceEE--EEeccCCCeEEEEEccCCC
Q 004214          364 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD------RTACVWRLPDLVSVV--TFRGHKRGIWSVEFSPVDQ  435 (768)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~~~~v~~v~~s~~~~  435 (768)
                      ...+.        . +...-.++ ..-++++.+.|+.+      ..+..||+.+.+-..  .+...... .++ ...++.
T Consensus       372 ~~~~l--------p-~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~-~~~~~~  439 (534)
T PHA03098        372 EEPPL--------I-FPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCA-IYHDGK  439 (534)
T ss_pred             eCCCc--------C-cCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceE-EEECCE
Confidence            10000        0 00101111 22367777777742      357888887643221  11111111 122 223466


Q ss_pred             EEEEeeCC--------CcEEEEeCCCCcee--EEeecCCCcEEEEEEEeCCCEEEEEeCC-----CcEEEEECCCCeE
Q 004214          436 VVITASGD--------KTIKIWSISDGSCL--KTFEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGEC  498 (768)
Q Consensus       436 ~l~t~~~d--------~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~  498 (768)
                      +.+.|+.+        ..+.+||..+++-.  ..+....... ++ ..-+++.++.||.+     ..+.+||+.+.+-
T Consensus       440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA-SL-CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccc-eE-EEECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence            66777643        23888898765422  2111111111 11 12366666777654     3678888776643

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.73  E-value=0.033  Score=37.24  Aligned_cols=34  Identities=6%  Similarity=0.233  Sum_probs=30.0

Q ss_pred             CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce
Q 004214          422 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC  456 (768)
Q Consensus       422 ~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~  456 (768)
                      ...|.+++|+|...+||.+..+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456999999999999999999999999998 5544

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.66  E-value=2.1  Score=40.94  Aligned_cols=270  Identities=13%  Similarity=0.083  Sum_probs=148.4

Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC---ce
Q 004214          242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES---RC  318 (768)
Q Consensus       242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~  318 (768)
                      +.++.+   .+++..++..+.-++++|+.+......+..-.-  ...+.++.-.|+. ...+..|.-+-+.|+.+   ..
T Consensus        89 ~~Dv~v---se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt--~gyaygv~vsGn~-aYVadlddgfLivdvsdpssP~  162 (370)
T COG5276          89 FADVRV---SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNT--DGYAYGVYVSGNY-AYVADLDDGFLIVDVSDPSSPQ  162 (370)
T ss_pred             hheeEe---cccEEEEEcCCCceEEEeccCCCCcceeccccC--CceEEEEEecCCE-EEEeeccCcEEEEECCCCCCce
Confidence            344444   456888888889999999987765543322111  0222334455666 55555454555667654   34


Q ss_pred             EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE
Q 004214          319 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG  398 (768)
Q Consensus       319 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  398 (768)
                      ....+.........++++-+   +...+..|+-+.+-|+.....        ............+.++..+++.-+++..
T Consensus       163 lagrya~~~~d~~~v~ISGn---~AYvA~~d~GL~ivDVSnp~s--------Pvli~~~n~g~g~~sv~vsdnr~y~vvy  231 (370)
T COG5276         163 LAGRYALPGGDTHDVAISGN---YAYVAWRDGGLTIVDVSNPHS--------PVLIGSYNTGPGTYSVSVSDNRAYLVVY  231 (370)
T ss_pred             eeeeeccCCCCceeEEEecC---eEEEEEeCCCeEEEEccCCCC--------CeEEEEEecCCceEEEEecCCeeEEEEc
Confidence            44455555555567777754   577778899999999985421        0111111223367778888776666654


Q ss_pred             eCCCcEEEEeCCCCceEEEEec--cCCC--eEEEEEccCCCEEEEeeCCCcEEEEeCCCCce---eEEeecCCCcEEEEE
Q 004214          399 SQDRTACVWRLPDLVSVVTFRG--HKRG--IWSVEFSPVDQVVITASGDKTIKIWSISDGSC---LKTFEGHTSSVLRAS  471 (768)
Q Consensus       399 ~~dg~i~i~d~~~~~~~~~~~~--~~~~--v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~  471 (768)
                      .  --+.+-|..+.+....+..  ...+  ++.+..+  +++...+..+.-+.+-|+.+..-   ...+......-..+.
T Consensus       232 ~--egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs--~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~  307 (370)
T COG5276         232 D--EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVS--GEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIR  307 (370)
T ss_pred             c--cceEEEecCCCCCceEeeccccCCcccccceecc--cceeeeeccccCceeEeccCCCCCchhccccCCCccccceE
Confidence            3  3477777776654433322  2222  2223333  77777777777777777764321   111111111111122


Q ss_pred             EEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214          472 FLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       472 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~  535 (768)
                        ..+.++..+..+ +..+-+....+......+....+.+.+.+-+.+.+.+...++-+.+|+.
T Consensus       308 --ay~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~  368 (370)
T COG5276         308 --AYGNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY  368 (370)
T ss_pred             --EecCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence              224455444443 3444444443333333333333444555556667888888999999975

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.60  E-value=0.045  Score=36.60  Aligned_cols=34  Identities=21%  Similarity=0.227  Sum_probs=29.9

Q ss_pred             cceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 004214           74 FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC  108 (768)
Q Consensus        74 ~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~  108 (768)
                      ...|.+++|+|....||.+..+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456999999999999999999999999998 5543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.56  E-value=2.8  Score=41.61  Aligned_cols=152  Identities=15%  Similarity=0.189  Sum_probs=81.0

Q ss_pred             ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC-CCCce
Q 004214          378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI-SDGSC  456 (768)
Q Consensus       378 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~-~~~~~  456 (768)
                      .....+..+..+++|++++++.......-||.-...-...-+.....|.+|.|.|++.+.+.+ ..|.|+.=+. ...+.
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET  220 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence            344678888999999999998766666677754322222233356789999999998877766 6688887762 22221


Q ss_pred             eEE----eecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec---cCCCcEEEEEEcCCCCEEEEEeCCCc
Q 004214          457 LKT----FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD---KHEDKIWALAVGKKTEMFATGGSDAL  529 (768)
Q Consensus       457 ~~~----~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~s~~~dg~  529 (768)
                      -..    +....-.+..++|.+++...++|+. |.+ +...+.|+.-....   .-...+..+.|.++.+ -.+.+.+|.
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~-gf~lG~~G~  297 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK-GFVLGQDGV  297 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE-EEEE-STTE
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc-eEEECCCcE
Confidence            111    1112334789999988777776654 533 34556666554443   2345678888875544 445567887


Q ss_pred             EEEE
Q 004214          530 VNLW  533 (768)
Q Consensus       530 v~vw  533 (768)
                      |.-|
T Consensus       298 ll~~  301 (302)
T PF14870_consen  298 LLRY  301 (302)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7655

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=95.46  E-value=6.1  Score=44.87  Aligned_cols=132  Identities=11%  Similarity=0.134  Sum_probs=77.5

Q ss_pred             CCcEEEEeCC-CCceEEEEec--cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC--CCcEEEEEEEeC
Q 004214          401 DRTACVWRLP-DLVSVVTFRG--HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH--TSSVLRASFLTR  475 (768)
Q Consensus       401 dg~i~i~d~~-~~~~~~~~~~--~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~  475 (768)
                      +|.++.|++- .++.+.-+..  -.++|  .+..|...++++|-+ ..+++||+...++++..+..  ...|+.+++  .
T Consensus       911 ~g~~ytyk~~~~g~~lellh~T~~~~~v--~Ai~~f~~~~LagvG-~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~  985 (1205)
T KOG1898|consen  911 SGFVYTYKFVRNGDKLELLHKTEIPGPV--GAICPFQGRVLAGVG-RFLRLYDLGKKKLLRKCELKFIPNRISSIQT--Y  985 (1205)
T ss_pred             CCceEEEEEEecCceeeeeeccCCCccc--eEEeccCCEEEEecc-cEEEEeeCChHHHHhhhhhccCceEEEEEee--c
Confidence            4557777653 3332222221  12233  455676667776655 78999999888877765532  345666655  4


Q ss_pred             CCEEEEEeCCCcEEE--EECCCCeEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          476 GAQIVSCGADGLVKL--WTVRTGECIATYDK-HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       476 ~~~l~s~~~dg~i~i--wd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      +..+++|..--.|.+  |+...++.+.-... -+..|+++.+- |...+|.+..=|.+.+-++...
T Consensus       986 ~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen  986 GARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred             ceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCCc
Confidence            668888877555544  55444444433322 22345555544 5556788888888888777654

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.43  E-value=0.01  Score=64.26  Aligned_cols=214  Identities=18%  Similarity=0.208  Sum_probs=116.3

Q ss_pred             eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECC--Cceee-----eeeeCCccceEEEeeeeecCCCEEEEEEeCC
Q 004214          234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS--SMSCS-----YVLAGHSEIVLCLDTCALSSGKILIVTGSKD  306 (768)
Q Consensus       234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~-----~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d  306 (768)
                      ...|+.+.+.++.|-+.+...+.  ..-|.+.+|++.  .|+..     .........+.-+.||.+.....++..+-++
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            35677888888888665555444  444778888865  33322     2223344455666677776666668888888


Q ss_pred             CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEE
Q 004214          307 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL  386 (768)
Q Consensus       307 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  386 (768)
                      +.|++.+...... ..+.+|...+..++|...|-..+..                                         
T Consensus       205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~-----------------------------------------  242 (1283)
T KOG1916|consen  205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS-----------------------------------------  242 (1283)
T ss_pred             CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-----------------------------------------
Confidence            9998887765433 3445577776666655443211111                                         


Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCC-----CCceEEEEeccC-CCeEEEEEccC---------CCEEEEe-eCCCcEEEEe
Q 004214          387 AVAPNDSLVCTGSQDRTACVWRLP-----DLVSVVTFRGHK-RGIWSVEFSPV---------DQVVITA-SGDKTIKIWS  450 (768)
Q Consensus       387 ~~s~~~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~-~~v~~v~~s~~---------~~~l~t~-~~d~~i~iwd  450 (768)
                       +||||..++.++.||.+++|.+.     ...+....+.|. .+-.|.-|+.+         -.+++++ ..+..+++|.
T Consensus       243 -lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~  321 (1283)
T KOG1916|consen  243 -LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWA  321 (1283)
T ss_pred             -eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEee
Confidence             45666666666666666555431     222333333444 22222222221         1234443 4466799999


Q ss_pred             CCCCceeEEee--------cCCCcEEEEEEEeC-CCEEEEEeCCCcEEEEE
Q 004214          451 ISDGSCLKTFE--------GHTSSVLRASFLTR-GAQIVSCGADGLVKLWT  492 (768)
Q Consensus       451 ~~~~~~~~~~~--------~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd  492 (768)
                      ....+|+-.+.        .|.+.|+.+....- -..+++.+-+|.|.+|-
T Consensus       322 ~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~q  372 (1283)
T KOG1916|consen  322 EAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQ  372 (1283)
T ss_pred             ccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhh
Confidence            88888772221        22223322111100 01234556678888884

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.33  E-value=0.63  Score=48.43  Aligned_cols=145  Identities=12%  Similarity=0.089  Sum_probs=83.3

Q ss_pred             CCeEEEEEccCCCEEEEEe-----------CCC-cEEEEeCCC--Cc--eEEEEeccCCCeEEEEEccCCCEEEEeeCCC
Q 004214          381 KDINSLAVAPNDSLVCTGS-----------QDR-TACVWRLPD--LV--SVVTFRGHKRGIWSVEFSPVDQVVITASGDK  444 (768)
Q Consensus       381 ~~i~~~~~s~~~~~l~~~~-----------~dg-~i~i~d~~~--~~--~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~  444 (768)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  ++  ....+.......+.+++.+++ +++ ++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            3467899999999887753           223 677776543  32  223444334456889999988 444 44443


Q ss_pred             cEEEEeCCC-C----c--ee-EEeec----CCCcEEEEEEEeCCCEEEEEeCC-------------------CcEEEEEC
Q 004214          445 TIKIWSISD-G----S--CL-KTFEG----HTSSVLRASFLTRGAQIVSCGAD-------------------GLVKLWTV  493 (768)
Q Consensus       445 ~i~iwd~~~-~----~--~~-~~~~~----~~~~v~~~~~s~~~~~l~s~~~d-------------------g~i~iwd~  493 (768)
                      ..++.|... +    +  .+ ..+..    +......+.|.|||.+.++-+..                   |.|.-++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            333435421 1    1  11 22322    23457789999999866654421                   34555565


Q ss_pred             CCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214          494 RTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA  528 (768)
Q Consensus       494 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg  528 (768)
                      .+++.. .+.......+.++|+|+|+.+++-..++
T Consensus       172 dg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~~~  205 (367)
T TIGR02604       172 DGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDNDDP  205 (367)
T ss_pred             CCCeEE-EEecCcCCCccceECCCCCEEEEccCCC
Confidence            554432 2222223456899999999887755443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PHA03098 kelch-like protein; Provisional

Probab=95.13  E-value=0.76  Score=50.86  Aligned_cols=142  Identities=12%  Similarity=0.129  Sum_probs=70.9

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCceEE--EEeccCCCeEEEEEccCCCEEEEeeCC------CcEEEEeCCCCcee
Q 004214          391 NDSLVCTGSQDR-----TACVWRLPDLVSVV--TFRGHKRGIWSVEFSPVDQVVITASGD------KTIKIWSISDGSCL  457 (768)
Q Consensus       391 ~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~t~~~d------~~i~iwd~~~~~~~  457 (768)
                      ++++++.|+.++     .+..||..+.+-..  .+...... .+++ .-++++.+.|+.+      ..+..||..+++-.
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            677888888653     47778876653211  11111111 1222 2346777777632      45888998765321


Q ss_pred             --EEeecCCCcEEEEEEEeCCCEEEEEeCCC--------cEEEEECCCCeEEEE--eccCCCcEEEEEEcCCCCEEEEEe
Q 004214          458 --KTFEGHTSSVLRASFLTRGAQIVSCGADG--------LVKLWTVRTGECIAT--YDKHEDKIWALAVGKKTEMFATGG  525 (768)
Q Consensus       458 --~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--------~i~iwd~~~~~~~~~--~~~~~~~v~~l~~s~~~~~l~s~~  525 (768)
                        ..+......  ..+...++...+.||.++        .+.+||..+++....  +..+......+.+  ++..++.||
T Consensus       420 ~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG  495 (534)
T PHA03098        420 KGSPLPISHYG--GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGG  495 (534)
T ss_pred             ecCCCCccccC--ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcC
Confidence              111111111  112234566666666432        388899887654332  1111111112222  677777777


Q ss_pred             CC-----CcEEEEEcCCH
Q 004214          526 SD-----ALVNLWHDSTA  538 (768)
Q Consensus       526 ~d-----g~v~vw~~~~~  538 (768)
                      .+     ..+.+||..+.
T Consensus       496 ~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        496 DKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CcCCcccceeEEEeCCCC
Confidence            54     35777776654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.13  E-value=0.74  Score=50.19  Aligned_cols=111  Identities=11%  Similarity=0.212  Sum_probs=74.5

Q ss_pred             CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe-ccCCCeEEEEEc--cCCCEEEEeeCCCcEEEEeCC-----
Q 004214          381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWSVEFS--PVDQVVITASGDKTIKIWSIS-----  452 (768)
Q Consensus       381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~v~~s--~~~~~l~t~~~d~~i~iwd~~-----  452 (768)
                      ..+.-+.-+.-++..++.+....+.|||...+.....-. .....|.+++|.  |+++.+++.|-.+.|.+|.-.     
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            344455555555555555555689999998876443322 346789999886  578888888888999998642     


Q ss_pred             ----CCceeEEee--cCC-CcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214          453 ----DGSCLKTFE--GHT-SSVLRASFLTRGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       453 ----~~~~~~~~~--~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  493 (768)
                          +..+++.+.  .|+ .+|.+..|.++|..++.+|  ..+.|+|-
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence                123444432  344 6899999999997766554  46777763

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.09  E-value=3.3  Score=39.71  Aligned_cols=95  Identities=12%  Similarity=0.127  Sum_probs=56.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeeeeeeC--CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec---
Q 004214          251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAG--HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG---  325 (768)
Q Consensus       251 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---  325 (768)
                      ++..|+....+..++.+|..+.+....+.-  ...++..+.-.-.-+ +.+.|=.-....|...|..+|+....+..   
T Consensus       138 dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~-G~IyANVW~td~I~~Idp~tG~V~~~iDls~L  216 (264)
T PF05096_consen  138 DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYIN-GKIYANVWQTDRIVRIDPETGKVVGWIDLSGL  216 (264)
T ss_dssp             CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEET-TEEEEEETTSSEEEEEETTT-BEEEEEE-HHH
T ss_pred             CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEc-CEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHh
Confidence            556777777778899999888776665532  223333222112223 33355455566788889999988876531   


Q ss_pred             ------------ccCcEEEEEEecCCCcEEEEE
Q 004214          326 ------------HMGAVGAVAFSKKLQNFLVSG  346 (768)
Q Consensus       326 ------------~~~~v~~~~~~~~~~~~l~s~  346 (768)
                                  .......+++.|....+++||
T Consensus       217 ~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  217 RPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             HHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             hhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence                        135689999999988888887

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA02790 Kelch-like protein; Provisional

Probab=94.83  E-value=2.3  Score=46.08  Aligned_cols=183  Identities=8%  Similarity=0.062  Sum_probs=83.5

Q ss_pred             CCEEEEEEeCCC-----eEEEEeCCCceEEEeeecccCcE-EEEEEecCCCcEEEEEeCC--CeEEEEeCCCCCCCCccc
Q 004214          296 GKILIVTGSKDN-----SVRLWDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQP  367 (768)
Q Consensus       296 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~  367 (768)
                      ++.++++|+.++     .+..||..++............. .+++ .-+ +.+.+.|+.+  .++..||.....      
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~-~~iYviGG~~~~~sve~ydp~~n~------  342 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PAN-NKLYVVGGLPNPTSVERWFHGDAA------  342 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EEC-CEEEEECCcCCCCceEEEECCCCe------
Confidence            344567776543     57778888776544322221111 1122 223 3366777653  356777754321      


Q ss_pred             cccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC---cEEEEeCCCCceEE--EEeccCCCeEEEEEccCCCEEEEeeC
Q 004214          368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR---TACVWRLPDLVSVV--TFRGHKRGIWSVEFSPVDQVVITASG  442 (768)
Q Consensus       368 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~t~~~  442 (768)
                        ........ ... ....+..-+|++.+.|+.++   .+..||..+.+-..  .+....... ++ ..-++.+.+.|  
T Consensus       343 --W~~~~~l~-~~r-~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~G--  414 (480)
T PHA02790        343 --WVNMPSLL-KPR-CNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVG--  414 (480)
T ss_pred             --EEECCCCC-CCC-cccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEEC--
Confidence              11110000 000 01112233678888887654   46778876543211  111111111 22 22346666666  


Q ss_pred             CCcEEEEeCCCCce--eEEeecCCCcEEEEEEEeCCCEEEEEeCC-----CcEEEEECCCCe
Q 004214          443 DKTIKIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGE  497 (768)
Q Consensus       443 d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~  497 (768)
                       |.+.+||..+++=  +..+....... ++ ..-+|+..+.||.+     ..+..||..+++
T Consensus       415 -G~~e~ydp~~~~W~~~~~m~~~r~~~-~~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        415 -RNAEFYCESSNTWTLIDDPIYPRDNP-EL-IIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             -CceEEecCCCCcEeEcCCCCCCcccc-EE-EEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence             3577888866532  22221111111 12 23466677777654     235566655443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.79  E-value=1.6  Score=46.04  Aligned_cols=159  Identities=12%  Similarity=0.139  Sum_probs=89.0

Q ss_pred             ccceEEEeeeeecCCCEEEEEEe--CCCeEEEEeCCCceEEEeeecccCcEEEEEEecCC---CcEEEEEeCCCeEEEEe
Q 004214          282 SEIVLCLDTCALSSGKILIVTGS--KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL---QNFLVSGSSDHTIKVWS  356 (768)
Q Consensus       282 ~~~v~~l~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~s~~~dg~i~iwd  356 (768)
                      -.++..+   +|.+|+.++.+.-  .+|.+++=|   ...+    +.-..|..++|.|-+   ..-+++.-....|.+|.
T Consensus        19 iHPvhGl---aWTDGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq   88 (671)
T PF15390_consen   19 IHPVHGL---AWTDGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ   88 (671)
T ss_pred             hccccce---EecCCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence            3456666   5677777566542  233332211   1222    334568889998853   12355566678899999


Q ss_pred             CCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC--ceEEEEeccCCCeEEEEEccCC
Q 004214          357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKRGIWSVEFSPVD  434 (768)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~v~~s~~~  434 (768)
                      +.......................--...+.|+|....|++-+....-.++++...  +....+ ...+-|.|.+|.+||
T Consensus        89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG  167 (671)
T PF15390_consen   89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDG  167 (671)
T ss_pred             eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcC
Confidence            87432221111000000000111112345789999888888776655555665432  233334 356789999999999


Q ss_pred             CEEEEeeCC-CcEEEEeC
Q 004214          435 QVVITASGD-KTIKIWSI  451 (768)
Q Consensus       435 ~~l~t~~~d-~~i~iwd~  451 (768)
                      +.|+++-+. =.-+|||-
T Consensus       168 ~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  168 QRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             CEEEEEeCCeEEEEEecC
Confidence            988776543 34568874

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.44  E-value=4.1  Score=37.69  Aligned_cols=101  Identities=10%  Similarity=0.103  Sum_probs=69.9

Q ss_pred             EEEEEEecCCCcEEEEEeCCCeEEEEeCC--CCCCCCcc-ccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 004214          330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFD--GLSDDAEQ-PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV  406 (768)
Q Consensus       330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  406 (768)
                      -..++|+.+.+.+.++-+.+-+|.-||.+  ++...... ....+...  ....-..-.+++..+|++.++.-..++|.-
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~--~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~  237 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ--PFESLEPDGMTIDTEGNLYVATFNGGTVQK  237 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC--CcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence            35688888878788888888899888844  33211110 00111000  001112235666778999999889999999


Q ss_pred             EeCCCCceEEEEeccCCCeEEEEEcc
Q 004214          407 WRLPDLVSVVTFRGHKRGIWSVEFSP  432 (768)
Q Consensus       407 ~d~~~~~~~~~~~~~~~~v~~v~~s~  432 (768)
                      +|..+++.+..+.-....|+|++|--
T Consensus       238 ~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  238 VDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             ECCCCCcEEEEEEcCCCceEEEEecC
Confidence            99999999999998899999999974

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.43  E-value=5.8  Score=39.43  Aligned_cols=108  Identities=17%  Similarity=0.196  Sum_probs=59.3

Q ss_pred             eccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEE-CCCCe
Q 004214          419 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT-VRTGE  497 (768)
Q Consensus       419 ~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd-~~~~~  497 (768)
                      ......+..+..+++|++++++..-....-||--...-...-..-...|..+.|.|++...+.+ ..|.|++=+ ...++
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~  219 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE  219 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence            3445678889999999999998775555677753221122222356789999999998776654 778888776 22333


Q ss_pred             EEEE----eccCCCcEEEEEEcCCCCEEEEEeCC
Q 004214          498 CIAT----YDKHEDKIWALAVGKKTEMFATGGSD  527 (768)
Q Consensus       498 ~~~~----~~~~~~~v~~l~~s~~~~~l~s~~~d  527 (768)
                      ....    +..-.-.+..++|.+++..+++|+..
T Consensus       220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             EE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             ccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence            2222    11123347899999998888877654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.42  E-value=7.1  Score=42.73  Aligned_cols=72  Identities=17%  Similarity=0.273  Sum_probs=48.8

Q ss_pred             CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004214           29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD  105 (768)
Q Consensus        29 h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~  105 (768)
                      .-+..-++..+|.... -+.  +.-..|+|++. +|+.+.++.-..+.+..|.|+.+. -|+....+|++.++++..
T Consensus        42 p~gGpIAV~r~p~~~~-~~~--~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   42 PFGGPIAVTRSPSKLV-PLY--SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG  113 (829)
T ss_pred             ccCCceEEEecccccc-ccc--ccceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence            3344456666663211 111  33456999997 788777766555588999998665 677788999999999854

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.40  E-value=0.6  Score=52.83  Aligned_cols=153  Identities=13%  Similarity=0.046  Sum_probs=93.7

Q ss_pred             cEEEEEEecCCCcEEEEE-eCCCeEEEEeCCCCCCCCccc-cccceeeEeeccCCCeEEEEEccCC-CEEEEEeCCCcEE
Q 004214          329 AVGAVAFSKKLQNFLVSG-SSDHTIKVWSFDGLSDDAEQP-MNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTAC  405 (768)
Q Consensus       329 ~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~  405 (768)
                      ++..+...+|+....+.. +.+-.|..||+.......... ..+....+......-..++.|+|.- ...++...|+.|.
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            455566666654333333 334468889988654322111 1111112222233455678888853 3456677888888


Q ss_pred             EEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec----CCCcEEEEEEEeCCCEEEE
Q 004214          406 VWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG----HTSSVLRASFLTRGAQIVS  481 (768)
Q Consensus       406 i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s  481 (768)
                      +..+........--......+|++|+|.|+.++.|-..|++.-|-. .++....+.+    ....|.+++|.....++++
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            8876543332222234567899999999999999999999998875 3343333332    1468999999887777765


Q ss_pred             E
Q 004214          482 C  482 (768)
Q Consensus       482 ~  482 (768)
                      -
T Consensus       261 y  261 (1405)
T KOG3630|consen  261 Y  261 (1405)
T ss_pred             e
Confidence            3

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=94.39  E-value=13  Score=43.36  Aligned_cols=30  Identities=10%  Similarity=0.031  Sum_probs=22.6

Q ss_pred             ceEEEEeeCCcEEEEEEcCCceeeeecCCc
Q 004214          150 EIHFITVGERGIVRMWNADSACLYEQKSSD  179 (768)
Q Consensus       150 ~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~  179 (768)
                      ..+++..--+|++++-|..+.++++.....
T Consensus       409 ~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~  438 (1899)
T KOG4659|consen  409 SYYIAVSPVDGTLYVSDPLSKQVWRVSSLE  438 (1899)
T ss_pred             eeEEEecCcCceEEecCCCcceEEEeccCC
Confidence            457777778899999988888777665543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.24  E-value=1.3  Score=48.27  Aligned_cols=112  Identities=14%  Similarity=0.164  Sum_probs=76.7

Q ss_pred             CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee-cCCCcEEEEEEE--eCCCEEEEEeCCCcEEEEECC----
Q 004214          422 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-GHTSSVLRASFL--TRGAQIVSCGADGLVKLWTVR----  494 (768)
Q Consensus       422 ~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s--~~~~~l~s~~~dg~i~iwd~~----  494 (768)
                      -...+-+.-|.-++..++-+...++.|||.+.+.....-. ...+.|.++.|.  |+|+.+++.|-.+.|.+|.-.    
T Consensus        29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            3344555555556666665556789999998887543332 357889999995  689999999999999998542    


Q ss_pred             -----CCeEEEEe--ccCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214          495 -----TGECIATY--DKHE-DKIWALAVGKKTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       495 -----~~~~~~~~--~~~~-~~v~~l~~s~~~~~l~s~~~dg~v~vw~~  535 (768)
                           +..++..+  ..|. .+|.+..|.++|..++++|  ..+.|++-
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence                 22334433  2333 6789999999998776654  35777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA02790 Kelch-like protein; Provisional

Probab=94.13  E-value=2.5  Score=45.88  Aligned_cols=140  Identities=9%  Similarity=0.016  Sum_probs=69.7

Q ss_pred             cCCCEEEEEeCCC--cEEEEeCCCCce--EEEEeccCCCeEEEEEccCCCEEEEeeCCC---cEEEEeCCCCceeE--Ee
Q 004214          390 PNDSLVCTGSQDR--TACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLK--TF  460 (768)
Q Consensus       390 ~~~~~l~~~~~dg--~i~i~d~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~---~i~iwd~~~~~~~~--~~  460 (768)
                      -++.+.++|+.++  .+..||..+.+-  +..+.........+  .-+|++.+.|+.++   .+..||..+.+-..  .+
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m  394 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST  394 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence            4677888887643  577888765422  11121111111122  23477777777553   46778876543211  11


Q ss_pred             ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEE--eccCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEE
Q 004214          461 EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIAT--YDKHEDKIWALAVGKKTEMFATGGSD-----ALVNLW  533 (768)
Q Consensus       461 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~s~~~~~l~s~~~d-----g~v~vw  533 (768)
                      ......  ..+..-+|+..+.|   |.+.+||..+++-...  +........ ++ .-+|+..+.||.+     ..+..|
T Consensus       395 ~~~r~~--~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~-~~-v~~~~IYviGG~~~~~~~~~ve~Y  467 (480)
T PHA02790        395 YYPHYK--SCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPE-LI-IVDNKLLLIGGFYRGSYIDTIEVY  467 (480)
T ss_pred             CCcccc--ceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccE-EE-EECCEEEEECCcCCCcccceEEEE
Confidence            101111  11223455555555   4577899877654322  221111222 22 2367778888754     346777


Q ss_pred             EcCCH
Q 004214          534 HDSTA  538 (768)
Q Consensus       534 ~~~~~  538 (768)
                      |..+.
T Consensus       468 d~~~~  472 (480)
T PHA02790        468 NNRTY  472 (480)
T ss_pred             ECCCC
Confidence            76654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.04  E-value=2.9  Score=46.19  Aligned_cols=113  Identities=12%  Similarity=0.271  Sum_probs=77.5

Q ss_pred             CCeEEEEEcc--CCCEEEEEeCCCcEEEEeCCC-------C-------------ceEEEEeccCCCeEEEEEc--cCCCE
Q 004214          381 KDINSLAVAP--NDSLVCTGSQDRTACVWRLPD-------L-------------VSVVTFRGHKRGIWSVEFS--PVDQV  436 (768)
Q Consensus       381 ~~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~-------~-------------~~~~~~~~~~~~v~~v~~s--~~~~~  436 (768)
                      ..|+.|.+..  +...|+.+..||.|.+|.+++       .             ++...+. ....++.++++  ...++
T Consensus       101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rl  179 (717)
T PF08728_consen  101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRL  179 (717)
T ss_pred             ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceE
Confidence            4466666555  556889999999999997521       0             0112222 34578999999  88899


Q ss_pred             EEEeeCCCcEEEEeCCCC--c-eeEEeecCCCcEEEEEEEeCC-----C-EEEEEeCCCcEEEEECC
Q 004214          437 VITASGDKTIKIWSISDG--S-CLKTFEGHTSSVLRASFLTRG-----A-QIVSCGADGLVKLWTVR  494 (768)
Q Consensus       437 l~t~~~d~~i~iwd~~~~--~-~~~~~~~~~~~v~~~~~s~~~-----~-~l~s~~~dg~i~iwd~~  494 (768)
                      ||+++....|.||-....  + ....-..|...|-+++|.++.     . ++++++-.|.+.+|++.
T Consensus       180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            999998888888865432  1 111111266678889997653     2 78888899999998873

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=93.87  E-value=8  Score=38.87  Aligned_cols=235  Identities=11%  Similarity=0.099  Sum_probs=117.6

Q ss_pred             CEEEEEeCCCcEEEEECCC--ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE-----------
Q 004214          253 QYLAVATNIEQVQVYDLSS--MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-----------  319 (768)
Q Consensus       253 ~~l~~~~~~~~i~i~d~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----------  319 (768)
                      .+++.|+++|...+. ...  ....+.  .+...|.++.  .....+.+++.++....++.+++..-..           
T Consensus        14 ~~lL~GTe~Gly~~~-~~~~~~~~~kl--~~~~~v~q~~--v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~   88 (302)
T smart00036       14 KWLLVGTEEGLYVLN-ISDQPGTLEKL--IGRRSVTQIW--VLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV   88 (302)
T ss_pred             cEEEEEeCCceEEEE-cccCCCCeEEe--cCcCceEEEE--EEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence            589999997766665 443  222222  3456888887  6677777677777777799998732211           


Q ss_pred             ----EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccccee-eEeeccCCCeEEEEEccC--C
Q 004214          320 ----VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK-AVVAAHGKDINSLAVAPN--D  392 (768)
Q Consensus       320 ----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~--~  392 (768)
                          ....-+|.......+........++++....+|.++..........   ..+.. ........++..+..+++  .
T Consensus        89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~---~~k~~~~~~~~~~~~~~~~~~~~~~~~  165 (302)
T smart00036       89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFK---LFKSKFLFPLISPVPVFVELVSSSFER  165 (302)
T ss_pred             ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhh---hhcccccccCCCCccceEeeecccccc
Confidence                0111234443344444333223445555566777765432210000   00000 000011223334444443  5


Q ss_pred             CEEEEEeCCCcEEEEeCCC--CceEE-----EEeccC-CCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC-ceeE--Eee
Q 004214          393 SLVCTGSQDRTACVWRLPD--LVSVV-----TFRGHK-RGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLK--TFE  461 (768)
Q Consensus       393 ~~l~~~~~dg~i~i~d~~~--~~~~~-----~~~~~~-~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~-~~~~--~~~  461 (768)
                      ..+++|+..+...++++..  .....     ...... .++..+.+ +++.+|++-.  ....+-|.. | ...+  .+.
T Consensus       166 ~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc~~--~~~v~Vn~~-G~~~~r~~~l~  241 (302)
T smart00036      166 PGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLCYD--EFGVFVNLY-GKRRSRNPILH  241 (302)
T ss_pred             eEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEEEC--cEEEEEeCC-CCccccceEEE
Confidence            6777777653344444432  11000     011111 34433343 3455555433  334444543 3 2211  122


Q ss_pred             cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 004214          462 GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD  503 (768)
Q Consensus       462 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  503 (768)
                       -.....++++.  ..+|+.-+.++ |.|+++.+++.++++.
T Consensus       242 -w~~~p~~~~~~--~pyll~~~~~~-ievr~l~~~~l~q~i~  279 (302)
T smart00036      242 -WEFMPESFAYH--SPYLLAFHDNG-IEIRSIKTGELLQELA  279 (302)
T ss_pred             -cCCcccEEEEE--CCEEEEEcCCc-EEEEECCCCceEEEEe
Confidence             23445566666  45777766554 9999999999998886

Unpublished observations.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.73  E-value=3.6  Score=37.38  Aligned_cols=171  Identities=8%  Similarity=-0.009  Sum_probs=89.8

Q ss_pred             EEEEEEeC--CCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE
Q 004214          298 ILIVTGSK--DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV  375 (768)
Q Consensus       298 ~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  375 (768)
                      .++.+.+.  ...|++||+.+++.+...+-....+..=-...-+..+..-.-.+|.-..+|.+....          ...
T Consensus        57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~----------lg~  126 (262)
T COG3823          57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE----------LGR  126 (262)
T ss_pred             EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhh----------hcc
Confidence            44555443  347999999999887665433222222112222233334444566667777663321          111


Q ss_pred             eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec--cCCCe---EEEEEccCCCEEEEeeCCCcEEEEe
Q 004214          376 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--HKRGI---WSVEFSPVDQVVITASGDKTIKIWS  450 (768)
Q Consensus       376 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v---~~v~~s~~~~~l~t~~~d~~i~iwd  450 (768)
                      + ...+.-..++  .|+.-|+.++...+++.-|..+.....++.-  ...+|   +.+.|- +|.+.|-.-.+..|...+
T Consensus       127 ~-~y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~  202 (262)
T COG3823         127 F-SYEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARID  202 (262)
T ss_pred             c-ccCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEc
Confidence            1 1112223333  3455566666566777777766544433321  12222   233333 355555555556666667


Q ss_pred             CCCCceeEEee------------cCCCcEEEEEEEeCCCE-EEEE
Q 004214          451 ISDGSCLKTFE------------GHTSSVLRASFLTRGAQ-IVSC  482 (768)
Q Consensus       451 ~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~-l~s~  482 (768)
                      ..+|+.+..+.            .|....+.+++.|++.. +++|
T Consensus       203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            77777666554            34556778899888754 4443

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.45  E-value=3  Score=35.05  Aligned_cols=110  Identities=12%  Similarity=0.147  Sum_probs=71.4

Q ss_pred             CCccEEEEEeCCCcEEEEECCCC--------eeEEEecCccceeEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCee
Q 004214           42 TDKSLLFSGSDDATVRVWDLLAK--------KCVATLDKHFSRVTSMAITS-----DGSTLISAGRDKVVNLWDLRDYSC  108 (768)
Q Consensus        42 ~~~~~l~sg~~dg~I~iWd~~~~--------~~~~~l~~h~~~V~~l~fs~-----d~~~L~s~~~dg~i~vWd~~~~~~  108 (768)
                      |..+-|+.++.-|.|.|++....        ..+..|. -...|++|+-.+     +...|+.|+ ...+..||+....-
T Consensus         8 G~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d   85 (136)
T PF14781_consen    8 GVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSD   85 (136)
T ss_pred             CCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCch
Confidence            34445888888999999997643        2344454 344577776443     233455554 56799999999888


Q ss_pred             eeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceee
Q 004214          109 KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY  173 (768)
Q Consensus       109 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~  173 (768)
                      +......+.+.++.+-.-+.                    ....++..|.+..|.-||.++..++
T Consensus        86 ~Fyke~~DGvn~i~~g~~~~--------------------~~~~l~ivGGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   86 LFYKEVPDGVNAIVIGKLGD--------------------IPSPLVIVGGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             hhhhhCccceeEEEEEecCC--------------------CCCcEEEECceEEEEEeCCCCcEEE
Confidence            87777777777776643322                    1125666677777887777766443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.43  E-value=10  Score=38.73  Aligned_cols=237  Identities=12%  Similarity=0.128  Sum_probs=115.4

Q ss_pred             EEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE---EEee----ecccCcEEEEEEecC---CCcEEEEEeCC------
Q 004214          286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC---VGVG----TGHMGAVGAVAFSKK---LQNFLVSGSSD------  349 (768)
Q Consensus       286 ~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~~l~s~~~d------  349 (768)
                      +.|+  +.+++.  ++++...|.|++++ ..+..   +...    .........++++|+   ...+.++.+..      
T Consensus         5 ~~~a--~~pdG~--l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    5 RSMA--FLPDGR--LLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             EEEE--EETTSC--EEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             eEEE--EeCCCc--EEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence            4555  666654  45567799999999 33332   2222    234456889999994   12233333321      


Q ss_pred             --CeEEEEeCCCCCCCCccccccceeeEee---ccCCCeEEEEEccCCCEEEEEeCCCc-------------EEEEeCCC
Q 004214          350 --HTIKVWSFDGLSDDAEQPMNLKAKAVVA---AHGKDINSLAVAPNDSLVCTGSQDRT-------------ACVWRLPD  411 (768)
Q Consensus       350 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~-------------i~i~d~~~  411 (768)
                        ..|.-|..........  ..........   ........|+|.|+|.+.++.+..+.             |.-.+...
T Consensus        80 ~~~~v~r~~~~~~~~~~~--~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG  157 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLS--SEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG  157 (331)
T ss_dssp             EEEEEEEEEEETTSCEEE--EEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred             cceeeEEEeccCCccccc--cceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC
Confidence              2333344432200000  0000111111   12345577999999987777665432             22223211


Q ss_pred             C-------------ceEEEEeccCCCeEEEEEccC-CCEEEEe-eCCCcEEEEeCCCC----------------------
Q 004214          412 L-------------VSVVTFRGHKRGIWSVEFSPV-DQVVITA-SGDKTIKIWSISDG----------------------  454 (768)
Q Consensus       412 ~-------------~~~~~~~~~~~~v~~v~~s~~-~~~l~t~-~~d~~i~iwd~~~~----------------------  454 (768)
                      .             ....--.++. ....++|+|. |+++++= +.|+.=.|.-+..|                      
T Consensus       158 ~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~  236 (331)
T PF07995_consen  158 SIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA  236 (331)
T ss_dssp             SB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred             cCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence            0             0000011222 3457899998 6655542 22222222222111                      


Q ss_pred             -------ceeEEeecCCCcEEEEEEEeC-------CCEEEEEeCCCcEEEEECCCCeEEE---E-eccCCCcEEEEEEcC
Q 004214          455 -------SCLKTFEGHTSSVLRASFLTR-------GAQIVSCGADGLVKLWTVRTGECIA---T-YDKHEDKIWALAVGK  516 (768)
Q Consensus       455 -------~~~~~~~~~~~~v~~~~~s~~-------~~~l~s~~~dg~i~iwd~~~~~~~~---~-~~~~~~~v~~l~~s~  516 (768)
                             .++..+. +...++.+.|...       |.++++.-..+.|....+..+..+.   . +.....++..+++.|
T Consensus       237 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p  315 (331)
T PF07995_consen  237 PSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP  315 (331)
T ss_dssp             SS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred             cCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence                   1223333 4466777888643       4466665556688888877553322   2 233455899999999


Q ss_pred             CCCEEEEEeCCCcEE
Q 004214          517 KTEMFATGGSDALVN  531 (768)
Q Consensus       517 ~~~~l~s~~~dg~v~  531 (768)
                      ||.+.++...+|.|.
T Consensus       316 DG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  316 DGALYVSDDSDGKIY  330 (331)
T ss_dssp             TSEEEEEE-TTTTEE
T ss_pred             CCeEEEEECCCCeEe
Confidence            999999988888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.38  E-value=4.3  Score=34.20  Aligned_cols=122  Identities=16%  Similarity=0.119  Sum_probs=72.2

Q ss_pred             EccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec----CCCCEEEEEeCCCcEEEEECCCce
Q 004214          198 VLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG----EEEQYLAVATNIEQVQVYDLSSMS  273 (768)
Q Consensus       198 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~~~~~~i~i~d~~~~~  273 (768)
                      |......|++++..|++.+++....................+..|++++--+    .+...|++|+. ..+..||+....
T Consensus         6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~   84 (136)
T PF14781_consen    6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNS   84 (136)
T ss_pred             eCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCc
Confidence            4455667899999999999987655432211222234455667778776643    34556666666 889999998776


Q ss_pred             eeeeeeCCccceEEEeeeeecC-CCEEEEEEeCCCeEEEEeCCCceEEEe
Q 004214          274 CSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSVRLWDSESRCCVGV  322 (768)
Q Consensus       274 ~~~~~~~~~~~v~~l~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~  322 (768)
                      .+..- .-.+.+.++.+..... ... ++..+.+..|.=||....+...+
T Consensus        85 d~Fyk-e~~DGvn~i~~g~~~~~~~~-l~ivGGncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   85 DLFYK-EVPDGVNAIVIGKLGDIPSP-LVIVGGNCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             hhhhh-hCccceeEEEEEecCCCCCc-EEEECceEEEEEeCCCCcEEEEE
Confidence            55332 2235566654333333 333 44444456676666665554443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=93.30  E-value=2.9  Score=45.17  Aligned_cols=77  Identities=10%  Similarity=0.201  Sum_probs=46.3

Q ss_pred             cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEE-ECCCCeEE
Q 004214          421 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW-TVRTGECI  499 (768)
Q Consensus       421 ~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw-d~~~~~~~  499 (768)
                      |.+.|--+..+..+..|+--...-.+.++|+.+.+....+    ...+.+.|.|....++.-+.|. +.|| ++.-.+.+
T Consensus       336 h~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil----nfcsymqwvp~sdvivaqn~dn-l~iwyn~d~peqv  410 (1636)
T KOG3616|consen  336 HEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL----NFCSYMQWVPGSDVIVAQNGDN-LCIWYNIDAPEQV  410 (1636)
T ss_pred             ccccccceeccchhhhhhcccccceeEEEEcccchHHHHH----HHhhhheeccCcceEEecCCCc-eEEEecCCcchhh
Confidence            6667666666666655655555566788888764322111    1234578888877777666555 5665 56555544


Q ss_pred             EEe
Q 004214          500 ATY  502 (768)
Q Consensus       500 ~~~  502 (768)
                      ..+
T Consensus       411 t~~  413 (1636)
T KOG3616|consen  411 TMF  413 (1636)
T ss_pred             eee
Confidence            443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.30  E-value=1.8  Score=44.65  Aligned_cols=149  Identities=9%  Similarity=0.097  Sum_probs=93.2

Q ss_pred             cCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCC------cEEEEEeCCCeEEEEeCCCCCCCCccc
Q 004214          294 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ------NFLVSGSSDHTIKVWSFDGLSDDAEQP  367 (768)
Q Consensus       294 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~  367 (768)
                      .+...++..|+....++-.|++.|+.+.....|...  -+.|.|..+      ..-+.|-.+..|.-.|.+....     
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN-----  549 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN-----  549 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCC-----
Confidence            344444556677778888899999999998887765  566776532      1123444455554445442210     


Q ss_pred             cccceeeEe-eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcE
Q 004214          368 MNLKAKAVV-AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI  446 (768)
Q Consensus       368 ~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i  446 (768)
                       ........ ........|..-. ...++|+|+..|-|++||--.......+.+-...|..+..+.+|.++++.|. ..+
T Consensus       550 -Ki~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yl  626 (776)
T COG5167         550 -KIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYL  626 (776)
T ss_pred             -ceeeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceE
Confidence             00000000 0011122222222 3458999999999999997655555567777889999999999999888877 667


Q ss_pred             EEEeCC
Q 004214          447 KIWSIS  452 (768)
Q Consensus       447 ~iwd~~  452 (768)
                      .+-|+.
T Consensus       627 lL~d~~  632 (776)
T COG5167         627 LLTDVP  632 (776)
T ss_pred             EEEecc
Confidence            777763

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.23  E-value=0.1  Score=53.03  Aligned_cols=237  Identities=14%  Similarity=0.143  Sum_probs=135.5

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccc
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK  371 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  371 (768)
                      +.+.+.. ++.++.+..+..||-........  ..++..-.++|..++...++.+-..+.+.+||+.......       
T Consensus        42 w~~e~~n-lavaca~tiv~~YD~agq~~le~--n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-------  111 (615)
T KOG2247|consen   42 WRPEGHN-LAVACANTIVIYYDKAGQVILEL--NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-------  111 (615)
T ss_pred             EecCCCc-eehhhhhhHHHhhhhhcceeccc--CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-------
Confidence            6677777 77777777888888544322221  2345566788888888778888889999999997532110       


Q ss_pred             eeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214          372 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI  451 (768)
Q Consensus       372 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~  451 (768)
                       ...-..|...  -+.|++.+..++.+...|.+.|++..+.+.+...-.|...++++++.+.+.. +.++.|..+.+-..
T Consensus       112 -LE~gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v-il~dcd~~L~v~~q  187 (615)
T KOG2247|consen  112 -LESGGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV-ILCDCDNTLSVTTQ  187 (615)
T ss_pred             -HhccCcchHH--HHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccccee-eecCcHHHHHHhhh
Confidence             0000111122  2678999999999999999999999888777766669999999999996654 44445554443322


Q ss_pred             CCCceeEEee--cCCCcEE--EE---EEEeCCCEEEEEeCCCcEEEE----ECCCCeEEEEeccCCCcEEEEEEcCCCCE
Q 004214          452 SDGSCLKTFE--GHTSSVL--RA---SFLTRGAQIVSCGADGLVKLW----TVRTGECIATYDKHEDKIWALAVGKKTEM  520 (768)
Q Consensus       452 ~~~~~~~~~~--~~~~~v~--~~---~~s~~~~~l~s~~~dg~i~iw----d~~~~~~~~~~~~~~~~v~~l~~s~~~~~  520 (768)
                      . ++.....+  +......  .+   .|..-|..+.+.-. |.+.+.    +-..+..-..+..-.+.+.+..|--||. 
T Consensus       188 e-geta~ltevggepdnm~~~y~k~n~w~kage~m~sVvs-gKkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg~-  264 (615)
T KOG2247|consen  188 E-GETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVS-GKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDGY-  264 (615)
T ss_pred             c-cceeeeeeccCccchhhhheeeeeccccccceeeeeee-cHHHHHHHhhcCCCCccceEeeecCCceeEEEEecccc-
Confidence            1 12111111  1111000  11   12223333333221 111111    0011111124555567788888888875 


Q ss_pred             EEEEeCCCcEEEEEcCCHHHHHHHH
Q 004214          521 FATGGSDALVNLWHDSTAAEREEAF  545 (768)
Q Consensus       521 l~s~~~dg~v~vw~~~~~~~~~~~~  545 (768)
                      |.-+..-|.|..-...+++...+-.
T Consensus       265 i~igf~ag~iV~iS~h~aeLgaeff  289 (615)
T KOG2247|consen  265 ILIGFDAGYIVSISAHNAELGAEFF  289 (615)
T ss_pred             ccccccceeEEEEeccchHHHHHHH
Confidence            3445555555555566665554433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.20  E-value=18  Score=40.96  Aligned_cols=33  Identities=21%  Similarity=0.283  Sum_probs=24.8

Q ss_pred             cceeEEEEccC---CCceEEEEecCeEEEEeeccCc
Q 004214          191 RGFTAATVLPS---NQGLLCVTADQQLLLYTTVEVP  223 (768)
Q Consensus       191 ~~~~~~~~~~~---~~~l~~~~~dg~i~~~~~~~~~  223 (768)
                      ..+..+.|+|.   +..+++.+.|+.+++|++....
T Consensus       147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             ceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence            34556667766   5788999999999999987544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK13684 Ycf48-like protein; Provisional

Probab=92.74  E-value=13  Score=38.03  Aligned_cols=151  Identities=14%  Similarity=0.128  Sum_probs=87.4

Q ss_pred             CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEE-EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeE
Q 004214          380 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK  458 (768)
Q Consensus       380 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~  458 (768)
                      ...+.++.+.|++.+++++. .|.+..-.-..++.-.. ...-...++++.+.|+++.++++. .|.+++=....|..-.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW~  249 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESWS  249 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCccc
Confidence            45678899999987766654 45444321112222222 223446789999999998877764 4766532344443322


Q ss_pred             Eeec----CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec---cCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 004214          459 TFEG----HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD---KHEDKIWALAVGKKTEMFATGGSDALVN  531 (768)
Q Consensus       459 ~~~~----~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~s~~~dg~v~  531 (768)
                      ....    ....+..+.+.+++..++ ++.+|.+. .....|+.-....   .-......+.|..+++.++ .|..|.|.
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il  326 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLL  326 (334)
T ss_pred             cccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEE
Confidence            2221    123577888988876554 55567554 4455555444432   2223577777776666554 56678887


Q ss_pred             EEEc
Q 004214          532 LWHD  535 (768)
Q Consensus       532 vw~~  535 (768)
                      -|+-
T Consensus       327 ~~~~  330 (334)
T PRK13684        327 RYVG  330 (334)
T ss_pred             EecC
Confidence            7764

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.72  E-value=4.5  Score=45.65  Aligned_cols=71  Identities=21%  Similarity=0.353  Sum_probs=44.0

Q ss_pred             CCeEEEEEccCCCEEEEEeCCCcEEEEeCCC----------Cce---EEEE--------eccCCCeEEEEEccC---CCE
Q 004214          381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPD----------LVS---VVTF--------RGHKRGIWSVEFSPV---DQV  436 (768)
Q Consensus       381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~----------~~~---~~~~--------~~~~~~v~~v~~s~~---~~~  436 (768)
                      -.|..+.++|+|++++..|..| |.|..+..          ++.   ..++        ..+...|..+.|+|.   +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            4688999999999999988865 44444432          111   0111        012345666777775   356


Q ss_pred             EEEeeCCCcEEEEeCC
Q 004214          437 VITASGDKTIKIWSIS  452 (768)
Q Consensus       437 l~t~~~d~~i~iwd~~  452 (768)
                      |++-..|+++|+||+.
T Consensus       164 l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDIS  179 (717)
T ss_pred             EEEEecCCEEEEEecC
Confidence            6666677777777763

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK10115 protease 2; Provisional

Probab=92.41  E-value=24  Score=40.26  Aligned_cols=234  Identities=9%  Similarity=0.019  Sum_probs=111.6

Q ss_pred             eecCCCEEEEEEeCCC----eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC-----CeEEEEeCCCCCC
Q 004214          292 ALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSD  362 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~  362 (768)
                      ++++++.+.++...+|    .|++.|+.++..+...-..  .-..++|.++++.++++...+     ..|..+++.+...
T Consensus       134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~  211 (686)
T PRK10115        134 ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPAS  211 (686)
T ss_pred             ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChh
Confidence            5666676444444333    6888899887643221111  125689999988766665533     3566677664411


Q ss_pred             CCccccccceeeEeeccCCCeE-EEEEccCCCEEEEEeC---CCcEEEEeCC--CCceEEEEeccCCCeEEEEEccCCCE
Q 004214          363 DAEQPMNLKAKAVVAAHGKDIN-SLAVAPNDSLVCTGSQ---DRTACVWRLP--DLVSVVTFRGHKRGIWSVEFSPVDQV  436 (768)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~---dg~i~i~d~~--~~~~~~~~~~~~~~v~~v~~s~~~~~  436 (768)
                              .....+........ ....+.++++++..+.   ++.+.+++..  ++.....+.........+. +..+.+
T Consensus       212 --------~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l  282 (686)
T PRK10115        212 --------QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF  282 (686)
T ss_pred             --------HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence                    11112222222222 3334447777665543   3468888843  3332222222222222222 333333


Q ss_pred             EEEeeC---CCcEEEEeCCCCceeEEeecC-C-CcEEEEEEEeCCCEEEEEeCCCcEEE--EECCCCeEEEEec-cCCCc
Q 004214          437 VITASG---DKTIKIWSISDGSCLKTFEGH-T-SSVLRASFLTRGAQIVSCGADGLVKL--WTVRTGECIATYD-KHEDK  508 (768)
Q Consensus       437 l~t~~~---d~~i~iwd~~~~~~~~~~~~~-~-~~v~~~~~s~~~~~l~s~~~dg~i~i--wd~~~~~~~~~~~-~~~~~  508 (768)
                      ++....   ...|...++.+......+..+ . ..+..+.+. .+..+++...+|.-++  ++..++ .+..+. .....
T Consensus       283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~  360 (686)
T PRK10115        283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAY  360 (686)
T ss_pred             EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCce
Confidence            333222   223444444421222344444 3 367777776 3345556666775444  454333 334433 22223


Q ss_pred             EEEEEEc--CCC-CEEEEEe---CCCcEEEEEcCCH
Q 004214          509 IWALAVG--KKT-EMFATGG---SDALVNLWHDSTA  538 (768)
Q Consensus       509 v~~l~~s--~~~-~~l~s~~---~dg~v~vw~~~~~  538 (768)
                      +..+.++  +++ .++++.+   .-+.+..++..++
T Consensus       361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~  396 (686)
T PRK10115        361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG  396 (686)
T ss_pred             EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence            3334444  333 3444433   2455777777664

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.22  E-value=21  Score=39.28  Aligned_cols=54  Identities=15%  Similarity=0.182  Sum_probs=39.9

Q ss_pred             CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee--cCCCcEEEEEEEeCC
Q 004214          422 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE--GHTSSVLRASFLTRG  476 (768)
Q Consensus       422 ~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~  476 (768)
                      ...+..+..||+.++|+--..+|.|.+-+.+..++...+.  .|.. ...++|..+.
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~-p~qm~Wcgnd  271 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDP-PKQMAWCGND  271 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCc-hHhceeecCC
Confidence            3567788999999999999999999999988777777666  2322 2256665443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.94  E-value=1.2  Score=41.99  Aligned_cols=66  Identities=11%  Similarity=0.226  Sum_probs=51.2

Q ss_pred             EEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEe-------c-------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214          470 ASFLTRGAQIVSCGADGLVKLWTVRTGECIATY-------D-------KHEDKIWALAVGKKTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       470 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~-------~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~  535 (768)
                      +.+..++++|++.+.+|.+++||+.+++++..-       .       .....|..+.++.+|.-+++-+ +|..+.|+.
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            345678899999999999999999998765432       1       2556788999999998877765 577888875


Q ss_pred             C
Q 004214          536 S  536 (768)
Q Consensus       536 ~  536 (768)
                      .
T Consensus        95 ~   95 (219)
T PF07569_consen   95 D   95 (219)
T ss_pred             c
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=91.91  E-value=7.1  Score=40.64  Aligned_cols=99  Identities=12%  Similarity=0.121  Sum_probs=54.6

Q ss_pred             CCeEEEEEccCCCEEEEEeCCCcEEEE-eCCC-----Cce--EE-EEec----cCCCeEEEEEccCCCEEEEeeCC----
Q 004214          381 KDINSLAVAPNDSLVCTGSQDRTACVW-RLPD-----LVS--VV-TFRG----HKRGIWSVEFSPVDQVVITASGD----  443 (768)
Q Consensus       381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~-d~~~-----~~~--~~-~~~~----~~~~v~~v~~s~~~~~l~t~~~d----  443 (768)
                      .....+++.++| +++ +... .|..| |...     ++.  +. .+..    +......++|.|||.+.++-+..    
T Consensus        72 ~~p~Gi~~~~~G-lyV-~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~  148 (367)
T TIGR02604        72 SMVTGLAVAVGG-VYV-ATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASK  148 (367)
T ss_pred             CCccceeEecCC-EEE-eCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCce
Confidence            456889999988 444 4444 34444 4421     121  11 1222    12347789999999877655421    


Q ss_pred             ---------------CcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEe
Q 004214          444 ---------------KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG  483 (768)
Q Consensus       444 ---------------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  483 (768)
                                     |.|.-++...++. ..+...-.....++|+++|+++++-.
T Consensus       149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       149 VTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             eccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence                           3455555544432 22322223345789999998876644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.85  E-value=6.9  Score=40.62  Aligned_cols=140  Identities=14%  Similarity=0.137  Sum_probs=87.2

Q ss_pred             CCCEEE-EEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCC--------CEEEEeeCCCcEEEEeCC-CCceeEEe
Q 004214          391 NDSLVC-TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD--------QVVITASGDKTIKIWSIS-DGSCLKTF  460 (768)
Q Consensus       391 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~--------~~l~t~~~d~~i~iwd~~-~~~~~~~~  460 (768)
                      +..+|. .|+....++-.|++.|+.+.....|...  -+.|.|+.        +.|+-- .+..|.-.|.+ .|..+...
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGl-S~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGL-SDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEee-cccceEEecccccCCceeee
Confidence            444443 3445557788888999999888877665  56777753        344433 44445444543 33333322


Q ss_pred             ecCCCcEEEEEEEe----CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214          461 EGHTSSVLRASFLT----RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       461 ~~~~~~v~~~~~s~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~  535 (768)
                      + ...-++.-.|+.    ...|++.++..|.|++||--.-.--..+.+....|-.+..+.+|.++++.+.. .+.+-+.
T Consensus       555 e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~  631 (776)
T COG5167         555 E-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDV  631 (776)
T ss_pred             e-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEec
Confidence            2 222233333332    34499999999999999954433334456677889999999999998887765 3455443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.76  E-value=13  Score=37.87  Aligned_cols=152  Identities=14%  Similarity=0.207  Sum_probs=87.0

Q ss_pred             cCcEEEEEEecCCCcEEEEEeCCCe------EEEEeCCCCCCCCccccccceeeEeec--------cCCCeEEEEEccCC
Q 004214          327 MGAVGAVAFSKKLQNFLVSGSSDHT------IKVWSFDGLSDDAEQPMNLKAKAVVAA--------HGKDINSLAVAPND  392 (768)
Q Consensus       327 ~~~v~~~~~~~~~~~~l~s~~~dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~s~~~  392 (768)
                      -+.+..+.+.+++. .+++.+.+|.      +..+++......... ........+..        ..-+.-+|++.++|
T Consensus        19 ~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g   96 (326)
T PF13449_consen   19 FGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGG-VTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG   96 (326)
T ss_pred             cCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccc-eEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence            45677888886544 4666677776      555555431110000 00000000111        11255688887788


Q ss_pred             CEEEEEeCC------CcEEEEeCCCCceEEEEe---------------ccCCCeEEEEEccCCCEEEEeeC-----CC--
Q 004214          393 SLVCTGSQD------RTACVWRLPDLVSVVTFR---------------GHKRGIWSVEFSPVDQVVITASG-----DK--  444 (768)
Q Consensus       393 ~~l~~~~~d------g~i~i~d~~~~~~~~~~~---------------~~~~~v~~v~~s~~~~~l~t~~~-----d~--  444 (768)
                      .++++.-.+      ..|..++.. ++....+.               ..+....+++++|+|+.|+++.+     |+  
T Consensus        97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~  175 (326)
T PF13449_consen   97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR  175 (326)
T ss_pred             CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence            888877666      678888866 55443331               13457889999999997766543     22  


Q ss_pred             c-------EEEE--eCCC-CceeEEe----ec-----CCCcEEEEEEEeCCCEEEE
Q 004214          445 T-------IKIW--SISD-GSCLKTF----EG-----HTSSVLRASFLTRGAQIVS  481 (768)
Q Consensus       445 ~-------i~iw--d~~~-~~~~~~~----~~-----~~~~v~~~~~s~~~~~l~s  481 (768)
                      .       ++|+  |..+ +.....+    ..     ....++.+.+.+++++|+.
T Consensus       176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            1       4554  4444 3233322    22     4567889999999987764

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.58  E-value=0.82  Score=29.65  Aligned_cols=31  Identities=19%  Similarity=0.199  Sum_probs=25.8

Q ss_pred             ceeEEEEEcCCC---CEEEEEeCCCeEEEEECCC
Q 004214           75 SRVTSMAITSDG---STLISAGRDKVVNLWDLRD  105 (768)
Q Consensus        75 ~~V~~l~fs~d~---~~L~s~~~dg~i~vWd~~~  105 (768)
                      +.|.++.|||+.   .+|+.+-.-|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999854   4788888889999999985

It contains a characteristic DLL sequence motif.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.54  E-value=4.1  Score=38.50  Aligned_cols=70  Identities=13%  Similarity=0.282  Sum_probs=51.5

Q ss_pred             EccCCCEEEEeeCCCcEEEEeCCCCceeEEe-------e-------cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214          430 FSPVDQVVITASGDKTIKIWSISDGSCLKTF-------E-------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       430 ~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  495 (768)
                      +..++.+|++-+.+|.+++||+.+++++..-       .       .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4456888999999999999999988765332       1       2556788888888888776655 57888998655


Q ss_pred             CeEEE
Q 004214          496 GECIA  500 (768)
Q Consensus       496 ~~~~~  500 (768)
                      +.-+.
T Consensus        97 ~~W~~  101 (219)
T PF07569_consen   97 GCWIR  101 (219)
T ss_pred             ceeEE
Confidence            44333

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.51  E-value=13  Score=37.85  Aligned_cols=155  Identities=15%  Similarity=0.280  Sum_probs=95.3

Q ss_pred             CCeEEEEEccCCCEEEEEeCCCc------EEEEeCCC--C--ceE-----EEEeccCC--------CeEEEEEccCCCEE
Q 004214          381 KDINSLAVAPNDSLVCTGSQDRT------ACVWRLPD--L--VSV-----VTFRGHKR--------GIWSVEFSPVDQVV  437 (768)
Q Consensus       381 ~~i~~~~~s~~~~~l~~~~~dg~------i~i~d~~~--~--~~~-----~~~~~~~~--------~v~~v~~s~~~~~l  437 (768)
                      +.+..+.+.|++..+++.+.+|.      +..+++..  .  ..+     ..+....+        ...+|++.++|.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            56788999976666666677777      66666543  1  111     11111111        34478887888888


Q ss_pred             EEeeCC------CcEEEEeCCCCceeEEee---------------cCCCcEEEEEEEeCCCEEEEEeC-----CC--c--
Q 004214          438 ITASGD------KTIKIWSISDGSCLKTFE---------------GHTSSVLRASFLTRGAQIVSCGA-----DG--L--  487 (768)
Q Consensus       438 ~t~~~d------~~i~iwd~~~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~s~~~-----dg--~--  487 (768)
                      ++.-.+      ..|+.++.. |+.+..+.               ..+...-.++++|+|+.|+++..     |+  .  
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~  178 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP  178 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence            887777      789999976 76655542               13456788999999997766543     22  1  


Q ss_pred             -----EEE--EECCC-CeEEE----Eecc-----CCCcEEEEEEcCCCCEEEEE-----eCCCcEEEEEcC
Q 004214          488 -----VKL--WTVRT-GECIA----TYDK-----HEDKIWALAVGKKTEMFATG-----GSDALVNLWHDS  536 (768)
Q Consensus       488 -----i~i--wd~~~-~~~~~----~~~~-----~~~~v~~l~~s~~~~~l~s~-----~~dg~v~vw~~~  536 (768)
                           +++  ||..+ ++...    .+..     ....|..+.+-+++++|+--     +....++|+.+.
T Consensus       179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence                 444  45544 32332    2222     34678889999999877642     123456666654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.30  E-value=8.3  Score=42.82  Aligned_cols=142  Identities=9%  Similarity=0.063  Sum_probs=88.5

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceEE------EEe----------------ccCCCeEEEEEcc--CCCEEEEeeCCCcEE
Q 004214          392 DSLVCTGSQDRTACVWRLPDLVSVV------TFR----------------GHKRGIWSVEFSP--VDQVVITASGDKTIK  447 (768)
Q Consensus       392 ~~~l~~~~~dg~i~i~d~~~~~~~~------~~~----------------~~~~~v~~v~~s~--~~~~l~t~~~d~~i~  447 (768)
                      ..+++++. .+.|.||++.......      .+.                .....|+.|....  ....|+.+..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            56666655 6789999976432211      110                0112344444333  346889999999999


Q ss_pred             EEeCCC-------C-------------ceeEEeecCCCcEEEEEEE--eCCCEEEEEeCCCcEEEEECCCC--eEEE-Ee
Q 004214          448 IWSISD-------G-------------SCLKTFEGHTSSVLRASFL--TRGAQIVSCGADGLVKLWTVRTG--ECIA-TY  502 (768)
Q Consensus       448 iwd~~~-------~-------------~~~~~~~~~~~~v~~~~~s--~~~~~l~s~~~dg~i~iwd~~~~--~~~~-~~  502 (768)
                      +|.+++       .             ++...+. -...++++++.  ...++||+++....|.||-....  +... .-
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s  206 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS  206 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence            996521       0             0112222 34578889988  77778888888888888755432  1111 11


Q ss_pred             ccCCCcEEEEEEcCCC---C---EEEEEeCCCcEEEEEc
Q 004214          503 DKHEDKIWALAVGKKT---E---MFATGGSDALVNLWHD  535 (768)
Q Consensus       503 ~~~~~~v~~l~~s~~~---~---~l~s~~~dg~v~vw~~  535 (768)
                      ..|...|.+++|-++.   .   .|++++-.|.+.+|++
T Consensus       207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            1256678889887643   2   7888999999988887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=91.06  E-value=7.2  Score=42.34  Aligned_cols=68  Identities=15%  Similarity=0.371  Sum_probs=46.0

Q ss_pred             CCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214           30 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD  102 (768)
Q Consensus        30 ~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd  102 (768)
                      ...++++.-+|.|+.  ++++..||+|++|++...+.-.... ...+-..+.|...|  |+++..|..+.-|.
T Consensus        14 ~e~~~aiqshp~~~s--~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQS--FVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWK   81 (1636)
T ss_pred             cceeeeeeecCCCce--EEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheee
Confidence            445778888898877  9999999999999987665522221 22334456676555  56666666666664

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=91.06  E-value=22  Score=37.16  Aligned_cols=40  Identities=10%  Similarity=0.239  Sum_probs=19.2

Q ss_pred             EEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 004214          488 VKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD  527 (768)
Q Consensus       488 i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d  527 (768)
                      +.+||+.+.+....-..+...-...+..-++..++.||..
T Consensus       314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~  353 (376)
T PRK14131        314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET  353 (376)
T ss_pred             hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence            4578887765322111111111222334467777887753

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.95  E-value=1.1  Score=29.07  Aligned_cols=31  Identities=16%  Similarity=0.247  Sum_probs=25.9

Q ss_pred             CCeEEEEEccCC---CEEEEeeCCCcEEEEeCCC
Q 004214          423 RGIWSVEFSPVD---QVVITASGDKTIKIWSISD  453 (768)
Q Consensus       423 ~~v~~v~~s~~~---~~l~t~~~d~~i~iwd~~~  453 (768)
                      +.|.++.|||..   .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            368899999854   5888888889999999985

It contains a characteristic DLL sequence motif.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=90.95  E-value=15  Score=35.11  Aligned_cols=187  Identities=10%  Similarity=0.017  Sum_probs=113.5

Q ss_pred             EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004214          330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL  409 (768)
Q Consensus       330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~  409 (768)
                      -..++-.|+|. .-+++...+.|--.|-.++          +......+.......+.+.|||..-++-+.. -|.-+|-
T Consensus        64 p~dvapapdG~-VWft~qg~gaiGhLdP~tG----------ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dp  131 (353)
T COG4257          64 PFDVAPAPDGA-VWFTAQGTGAIGHLDPATG----------EVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDP  131 (353)
T ss_pred             ccccccCCCCc-eEEecCccccceecCCCCC----------ceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecC
Confidence            34556666655 5566666666655555433          3444445555666788889988877664433 4555666


Q ss_pred             CCCceEE-E--EeccCCCeEEEEEccCCCEEEEeeC---------CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCC
Q 004214          410 PDLVSVV-T--FRGHKRGIWSVEFSPVDQVVITASG---------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA  477 (768)
Q Consensus       410 ~~~~~~~-~--~~~~~~~v~~v~~s~~~~~l~t~~~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  477 (768)
                      ++.+... .  ...-........|.+.|++-+++..         .+.|++|+.-          ....-..++..|+|.
T Consensus       132 kt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGs  201 (353)
T COG4257         132 KTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGS  201 (353)
T ss_pred             cccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCc
Confidence            5554322 1  1223446778899999999998763         1234444432          223455688889998


Q ss_pred             EEEEEeCCCcEEEEECCCCeE--EEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          478 QIVSCGADGLVKLWTVRTGEC--IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       478 ~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      .-++.-.+..|-..|..++..  +-.-......-..+-.+|.|+..+|....+.+.-+|....
T Consensus       202 vwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~  264 (353)
T COG4257         202 VWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT  264 (353)
T ss_pred             EEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence            888777777777778776621  1111111222334455778888888888888877776543

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=90.84  E-value=16  Score=35.04  Aligned_cols=223  Identities=10%  Similarity=0.114  Sum_probs=132.4

Q ss_pred             cCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccccee
Q 004214          294 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK  373 (768)
Q Consensus       294 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  373 (768)
                      +++.. -+++...|.|--.|..+++.....-+....-..+...|++...+.-++ . .|.-.|-.+...       ....
T Consensus        71 pdG~V-Wft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~-~-aI~R~dpkt~ev-------t~f~  140 (353)
T COG4257          71 PDGAV-WFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTG-L-AIGRLDPKTLEV-------TRFP  140 (353)
T ss_pred             CCCce-EEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCc-c-eeEEecCcccce-------EEee
Confidence            44433 566666777777788888777666666666667778888764433222 2 333333322110       0001


Q ss_pred             eEeeccCCCeEEEEEccCCCEEEEEeCC---------CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCC
Q 004214          374 AVVAAHGKDINSLAVAPNDSLVCTGSQD---------RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK  444 (768)
Q Consensus       374 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~  444 (768)
                      .....-........|++.|++-+++...         +.|++|+..          ....-..|+..|+|..-++.-.+.
T Consensus       141 lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslagn  210 (353)
T COG4257         141 LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAGN  210 (353)
T ss_pred             cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEecccc
Confidence            1112234567788999999998887532         234444432          233456788899999888877778


Q ss_pred             cEEEEeCCCCceeEEee---cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEE-EEeccCCCcEEEEEEcCCCCE
Q 004214          445 TIKIWSISDGSCLKTFE---GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI-ATYDKHEDKIWALAVGKKTEM  520 (768)
Q Consensus       445 ~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~l~~s~~~~~  520 (768)
                      .|-..|..++.. ..+.   +....-..+--+|.|+.-++....+.+..||..+..-. ..+.+....-.++.+...++.
T Consensus       211 aiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grV  289 (353)
T COG4257         211 AIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRV  289 (353)
T ss_pred             ceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcE
Confidence            888878766632 2222   11223334445677888888777888988887654421 223334445566777777777


Q ss_pred             EEEEeCCCcEEEEEcCC
Q 004214          521 FATGGSDALVNLWHDST  537 (768)
Q Consensus       521 l~s~~~dg~v~vw~~~~  537 (768)
                      ..+--.-|.|.-+|..+
T Consensus       290 W~sea~agai~rfdpet  306 (353)
T COG4257         290 WLSEADAGAIGRFDPET  306 (353)
T ss_pred             EeeccccCceeecCccc
Confidence            76655566666666544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=90.56  E-value=27  Score=37.40  Aligned_cols=165  Identities=14%  Similarity=0.117  Sum_probs=91.4

Q ss_pred             ceeEEEEEcCCCCEE-EEEe--CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcce
Q 004214           75 SRVTSMAITSDGSTL-ISAG--RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEI  151 (768)
Q Consensus        75 ~~V~~l~fs~d~~~L-~s~~--~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (768)
                      .+|..++|. ||+.+ +|.-  ..|.+++=|-      ..+...+.+..+.|.|.+..                   ...
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds------~viGqFEhV~GlsW~P~~~~-------------------~~p   73 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS------KVIGQFEHVHGLSWAPPCTA-------------------DTP   73 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCc------cEeeccceeeeeeecCcccC-------------------CCC
Confidence            478899997 55544 3432  2333333221      23444566888888887542                   123


Q ss_pred             EEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCc-ccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeE
Q 004214          152 HFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDS-KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI  230 (768)
Q Consensus       152 ~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~  230 (768)
                      .+++.-....|.+|.+....... ........++...+ .--...+.|+|....+.+.+....-.+++......      
T Consensus        74 aLLAVQHkkhVtVWqL~~s~~e~-~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s------  146 (671)
T PF15390_consen   74 ALLAVQHKKHVTVWQLCPSTTER-NKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS------  146 (671)
T ss_pred             ceEEEeccceEEEEEeccCcccc-ccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc------
Confidence            67777788899999886431111 11111111222111 12334567888888887777666555555543321      


Q ss_pred             EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc
Q 004214          231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM  272 (768)
Q Consensus       231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~  272 (768)
                      ..+.-....+-|.|.+|..++.+++++.++.=.-++||-...
T Consensus       147 rVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  147 RVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             eEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            112223556789999999744444444455567788986544

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=90.29  E-value=40  Score=38.90  Aligned_cols=195  Identities=11%  Similarity=0.079  Sum_probs=110.7

Q ss_pred             CEEEEEeCCCcEEEEECCCceeeee--------eeCCccceEEEeeeeecCCCEEEEEEeC--CCeEEEEeCC----C--
Q 004214          253 QYLAVATNIEQVQVYDLSSMSCSYV--------LAGHSEIVLCLDTCALSSGKILIVTGSK--DNSVRLWDSE----S--  316 (768)
Q Consensus       253 ~~l~~~~~~~~i~i~d~~~~~~~~~--------~~~~~~~v~~l~~~~~~~~~~~l~~~~~--dg~i~iwd~~----~--  316 (768)
                      .-+++-+.+|.+.+|-.+.......        +......++..+.++..+|..+++++..  .+.|++|.+.    .  
T Consensus        63 ~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~  142 (753)
T PF11635_consen   63 SACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKP  142 (753)
T ss_pred             eEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcC
Confidence            4455566679999987733222111        2224456666666667777765555544  5788887431    0  


Q ss_pred             ----ceEEEeee------------c-----------ccCcEEEEEEec------CCCcEEEEEeC----CCeEEEEeCCC
Q 004214          317 ----RCCVGVGT------------G-----------HMGAVGAVAFSK------KLQNFLVSGSS----DHTIKVWSFDG  359 (768)
Q Consensus       317 ----~~~~~~~~------------~-----------~~~~v~~~~~~~------~~~~~l~s~~~----dg~i~iwd~~~  359 (768)
                          .+....+.            .           ....++.+.|-+      ....++++.+.    ...|.-|.+..
T Consensus       143 ~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~  222 (753)
T PF11635_consen  143 QQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE  222 (753)
T ss_pred             ccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence                00000000            0           113566676654      12234544443    34688899875


Q ss_pred             CCCCCccc-----------cccceeeE-----eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEE----e
Q 004214          360 LSDDAEQP-----------MNLKAKAV-----VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF----R  419 (768)
Q Consensus       360 ~~~~~~~~-----------~~~~~~~~-----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~  419 (768)
                      ........           ........     .....+.|.+++...-+..++....||+|.++|..+.+.+...    .
T Consensus       223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~  302 (753)
T PF11635_consen  223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGE  302 (753)
T ss_pred             cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccC
Confidence            42111000           00011111     1123467888888888889999999999999998877555444    1


Q ss_pred             c---------------cCCCeEEEEEccCCCEEEEeeCCCcEE
Q 004214          420 G---------------HKRGIWSVEFSPVDQVVITASGDKTIK  447 (768)
Q Consensus       420 ~---------------~~~~v~~v~~s~~~~~l~t~~~d~~i~  447 (768)
                      .               +-.++..++|||.+..++.-..+|.+.
T Consensus       303 ~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  303 PPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK  345 (753)
T ss_pred             CccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence            0               111344578999998888888888765

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=90.19  E-value=42  Score=38.94  Aligned_cols=167  Identities=7%  Similarity=0.070  Sum_probs=93.6

Q ss_pred             cccCcEEEEEEe---cC---CCcEEEEEeCCCeEEEEeCCCCCC-----CCccccccceeeEee---ccCCCeEEEEEcc
Q 004214          325 GHMGAVGAVAFS---KK---LQNFLVSGSSDHTIKVWSFDGLSD-----DAEQPMNLKAKAVVA---AHGKDINSLAVAP  390 (768)
Q Consensus       325 ~~~~~v~~~~~~---~~---~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~---~~~~~i~~~~~s~  390 (768)
                      ....+|..|+|.   ..   ...+|+ .-....+.|+...-...     .........+...+.   ..+.+...++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~-Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLA-VRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEE-EEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            356788888887   21   123444 44455666766221110     000001112222222   2345678899999


Q ss_pred             -CCCEEEEEeCCCcEEEEeCCCC----c-eEEEEeccC----------CCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214          391 -NDSLVCTGSQDRTACVWRLPDL----V-SVVTFRGHK----------RGIWSVEFSPVDQVVITASGDKTIKIWSISDG  454 (768)
Q Consensus       391 -~~~~l~~~~~dg~i~i~d~~~~----~-~~~~~~~~~----------~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~  454 (768)
                       +.+.||+....|...||++...    . .......+.          ..-..+.|.++.+.|+.++. ..+.++|+.+.
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~  234 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN  234 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence             5678999999999999999211    1 111111111          22347889888888888766 67999999877


Q ss_pred             ceeE--EeecCCCcEEEEEEEeC--CCEEEEEeCCCcEEEEECCC
Q 004214          455 SCLK--TFEGHTSSVLRASFLTR--GAQIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       455 ~~~~--~~~~~~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~  495 (768)
                      ....  ........|..+.-++.  +..++..+  ..|...++..
T Consensus       235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~  277 (765)
T PF10214_consen  235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS  277 (765)
T ss_pred             CccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence            6533  12234567888877776  22222222  4565556554

These proteins are found in fungi.

>PRK13684 Ycf48-like protein; Provisional

Probab=90.09  E-value=24  Score=36.06  Aligned_cols=151  Identities=15%  Similarity=0.126  Sum_probs=85.1

Q ss_pred             cCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 004214          327 MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV  406 (768)
Q Consensus       327 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  406 (768)
                      .+.+..+.+.|++.  ++..+..|.+..- .+.+..      ..  ..........++++.+.|+++.++++ ..|.+.+
T Consensus       172 ~g~~~~i~~~~~g~--~v~~g~~G~i~~s-~~~gg~------tW--~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~  239 (334)
T PRK13684        172 AGVVRNLRRSPDGK--YVAVSSRGNFYST-WEPGQT------AW--TPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRF  239 (334)
T ss_pred             cceEEEEEECCCCe--EEEEeCCceEEEE-cCCCCC------eE--EEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEE
Confidence            45788899988753  4455556655431 111100      11  11112334678899999999887765 4576643


Q ss_pred             EeCCCCceEEEEec----cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee---cCCCcEEEEEEEeCCCEE
Q 004214          407 WRLPDLVSVVTFRG----HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE---GHTSSVLRASFLTRGAQI  479 (768)
Q Consensus       407 ~d~~~~~~~~~~~~----~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l  479 (768)
                      =..+.+..-.....    ....+.++.+.|++..++++ .+|.+. .....|+.-....   +-......+.|..+++.+
T Consensus       240 ~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~  317 (334)
T PRK13684        240 NDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGF  317 (334)
T ss_pred             ccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceE
Confidence            23344332221111    22457889999988766655 557554 4445454433332   223457778887776665


Q ss_pred             EEEeCCCcEEEEE
Q 004214          480 VSCGADGLVKLWT  492 (768)
Q Consensus       480 ~s~~~dg~i~iwd  492 (768)
                      + .+..|.|.-|+
T Consensus       318 ~-~G~~G~il~~~  329 (334)
T PRK13684        318 V-LGQRGVLLRYV  329 (334)
T ss_pred             E-ECCCceEEEec
Confidence            5 55568877765

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=90.05  E-value=26  Score=36.35  Aligned_cols=125  Identities=14%  Similarity=0.062  Sum_probs=65.0

Q ss_pred             EEeecCCCcEEEEECC----CCEEEEEEEc---CC----CcEEEEEEeeCCCccEEEEEeCC----CcEEEEECCCCeeE
Q 004214            3 ALLEGADRKVLVWDVD----GGFCTHYFKG---HK----GVVSSILFHPDTDKSLLFSGSDD----ATVRVWDLLAKKCV   67 (768)
Q Consensus         3 latg~~dg~i~vwd~~----~~~~~~~l~g---h~----~~V~~l~~spd~~~~~l~sg~~d----g~I~iWd~~~~~~~   67 (768)
                      ++-|=..+.|.|.|+.    ..+..+.+.+   +.    ..-..+.--|+|+..+-+-|..+    |-+.+.|-++.+..
T Consensus        91 i~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~  170 (461)
T PF05694_consen   91 ILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVK  170 (461)
T ss_dssp             EEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EE
T ss_pred             EeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccccc
Confidence            3344478999999996    4455555553   21    12222333467765333334443    45888898888887


Q ss_pred             EEecCccc---eeEEEEEcCCCCEEEEEe--------------------CCCeEEEEECCCCeeeeeeecce---eEeeE
Q 004214           68 ATLDKHFS---RVTSMAITSDGSTLISAG--------------------RDKVVNLWDLRDYSCKLTVPTYE---MVEAV  121 (768)
Q Consensus        68 ~~l~~h~~---~V~~l~fs~d~~~L~s~~--------------------~dg~i~vWd~~~~~~~~~~~~~~---~v~~~  121 (768)
                      ........   --..+-+.|..+.++|+.                    ...++.+||+.+.+.++++...+   .+..+
T Consensus       171 g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEv  250 (461)
T PF05694_consen  171 GRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEV  250 (461)
T ss_dssp             EE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEE
T ss_pred             ceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEE
Confidence            77654322   345677788888888875                    23589999999999999987653   35566


Q ss_pred             EecCCC
Q 004214          122 CAIPPG  127 (768)
Q Consensus       122 ~~~~~~  127 (768)
                      .|.++.
T Consensus       251 RflH~P  256 (461)
T PF05694_consen  251 RFLHDP  256 (461)
T ss_dssp             EE-SST
T ss_pred             EecCCC
Confidence            666554

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=89.94  E-value=21  Score=37.26  Aligned_cols=15  Identities=13%  Similarity=0.149  Sum_probs=10.6

Q ss_pred             CeEEEEeCCCceEEE
Q 004214          307 NSVRLWDSESRCCVG  321 (768)
Q Consensus       307 g~i~iwd~~~~~~~~  321 (768)
                      ..+.+||..+.....
T Consensus       189 ~~v~~YD~~t~~W~~  203 (376)
T PRK14131        189 KEVLSYDPSTNQWKN  203 (376)
T ss_pred             ceEEEEECCCCeeeE
Confidence            358889988776544

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.48  E-value=16  Score=37.59  Aligned_cols=124  Identities=11%  Similarity=0.128  Sum_probs=78.2

Q ss_pred             CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCce----EEEEeccCC
Q 004214          348 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS----VVTFRGHKR  423 (768)
Q Consensus       348 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~  423 (768)
                      ..|.+.-|-+.......       +........++|.++.||+|.+.+|+--.+.+|.+++....+.    ..+.+..+.
T Consensus        41 rSggatgvvvkgpndDV-------piSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~  113 (657)
T KOG2377|consen   41 RSGGATGVVVKGPNDDV-------PISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNA  113 (657)
T ss_pred             ecCCeeEEEEeCCCCCC-------CceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcc
Confidence            34455666665443211       2223334556999999999999999999999999999843322    222233345


Q ss_pred             CeEEEEEccCCCEEEEeeCCCcEEEEeCCC-CceeEEeecCCCcEEEEEEEeCCCEEE
Q 004214          424 GIWSVEFSPVDQVVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLRASFLTRGAQIV  480 (768)
Q Consensus       424 ~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~  480 (768)
                      .|...+|+.+. -+|.-...| +-+|-... .+.++..+.|...|.--.|.++.+.++
T Consensus       114 ~IlGF~W~~s~-e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  114 NILGFCWTSST-EIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             eeEEEEEecCe-eEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence            68888998763 444444433 66666433 344555666777787778888776543

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.43  E-value=6.2  Score=43.78  Aligned_cols=73  Identities=21%  Similarity=0.319  Sum_probs=46.5

Q ss_pred             CCCccEEEEEeCCCcEEEEECCC----CeeEEE-e-cC--------------------ccceeEEEEEcC----CCCEEE
Q 004214           41 DTDKSLLFSGSDDATVRVWDLLA----KKCVAT-L-DK--------------------HFSRVTSMAITS----DGSTLI   90 (768)
Q Consensus        41 d~~~~~l~sg~~dg~I~iWd~~~----~~~~~~-l-~~--------------------h~~~V~~l~fs~----d~~~L~   90 (768)
                      +...  ++.+..||.+.......    +..... + ..                    ..+.+..+++++    +..+|+
T Consensus       157 ~~~~--l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (547)
T PF11715_consen  157 SEAN--LVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLF  234 (547)
T ss_dssp             SSSB--EEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEE
T ss_pred             CCCE--EEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEE
Confidence            4455  77778888888877654    222111 1 11                    123456666666    778999


Q ss_pred             EEeCCCeEEEEECCCCeeeeeeecc
Q 004214           91 SAGRDKVVNLWDLRDYSCKLTVPTY  115 (768)
Q Consensus        91 s~~~dg~i~vWd~~~~~~~~~~~~~  115 (768)
                      +.+.|+++++||+.+++++.+....
T Consensus       235 tl~~D~~LRiW~l~t~~~~~~~~~~  259 (547)
T PF11715_consen  235 TLSRDHTLRIWSLETGQCLATIDLL  259 (547)
T ss_dssp             EEETTSEEEEEETTTTCEEEEEETT
T ss_pred             EEeCCCeEEEEECCCCeEEEEeccc
Confidence            9999999999999999998877554

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=88.99  E-value=50  Score=38.13  Aligned_cols=66  Identities=15%  Similarity=0.180  Sum_probs=40.9

Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEec---CccceeEEEEEcCCC------CEEEEEeCCCeEEEEECCCCeeeeee
Q 004214           47 LFSGSDDATVRVWDLLAKKCVATLD---KHFSRVTSMAITSDG------STLISAGRDKVVNLWDLRDYSCKLTV  112 (768)
Q Consensus        47 l~sg~~dg~I~iWd~~~~~~~~~l~---~h~~~V~~l~fs~d~------~~L~s~~~dg~i~vWd~~~~~~~~~~  112 (768)
                      ++.+-..|.+.-+-......+..+.   .-...|.|+++.++.      ++++.++.|+++++..+.-..++..+
T Consensus       552 iVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~l  626 (1205)
T KOG1898|consen  552 IVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPL  626 (1205)
T ss_pred             EEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEc
Confidence            4444445554444443222222332   234578899998865      57999999999999988755554444

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=88.94  E-value=24  Score=34.51  Aligned_cols=80  Identities=20%  Similarity=0.331  Sum_probs=53.2

Q ss_pred             EEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc------CCCEEEEEeCCCcEEEEeCCCCceEEE
Q 004214          344 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP------NDSLVCTGSQDRTACVWRLPDLVSVVT  417 (768)
Q Consensus       344 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~------~~~~l~~~~~dg~i~i~d~~~~~~~~~  417 (768)
                      +.|..-|.|-+||....         ...+....+.-.....|+..|      .+.+|+---.||+|..||..+++.+..
T Consensus       216 v~G~G~G~VdvFd~~G~---------l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~  286 (336)
T TIGR03118       216 VAGAGLGYVNVFTLNGQ---------LLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQ  286 (336)
T ss_pred             ccCCCcceEEEEcCCCc---------EEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeee
Confidence            44555678888887642         111111223334556777766      567777777899999999999998888


Q ss_pred             EeccCC------CeEEEEEcc
Q 004214          418 FRGHKR------GIWSVEFSP  432 (768)
Q Consensus       418 ~~~~~~------~v~~v~~s~  432 (768)
                      +....+      ..+.+.|..
T Consensus       287 L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       287 LLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             ecCCCCCeEEecCeEEeeeCC
Confidence            775433      467777765

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=88.76  E-value=30  Score=35.33  Aligned_cols=69  Identities=13%  Similarity=0.069  Sum_probs=43.8

Q ss_pred             cCCCeEEEEEcc-------CCCEEEEEeCCCcEEEEeCCCCceEEE----EeccCCCeEEEEEccCCCEEEEeeCCCcEE
Q 004214          379 HGKDINSLAVAP-------NDSLVCTGSQDRTACVWRLPDLVSVVT----FRGHKRGIWSVEFSPVDQVVITASGDKTIK  447 (768)
Q Consensus       379 ~~~~i~~~~~s~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~  447 (768)
                      +...+..+.|.+       .|.++++.-..+.|....+.....+..    +......+..+++.|||.+.++...+|.|.
T Consensus       251 ~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  251 PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            446677777764       455666666667888888765533221    223444799999999999998888888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.16  E-value=7.3  Score=45.56  Aligned_cols=145  Identities=19%  Similarity=0.273  Sum_probs=88.2

Q ss_pred             eCCCeEEEEeCCCceEEEeeecccCcEEEEEEec--------CCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE
Q 004214          304 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK--------KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV  375 (768)
Q Consensus       304 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  375 (768)
                      +.|+.+.+|+.+++.....+.+-...|..+..-.        .-+++|+.++ --.|.++-+.......... .......
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~-~f~~~~~  173 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELS-IFNTSFK  173 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCccc-cccccee
Confidence            4578899999999877777777777776665532        2233344333 3345555443221111110 0001122


Q ss_pred             eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC----CCC---c-----------------eEEEEe-ccCCCeEEEEE
Q 004214          376 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL----PDL---V-----------------SVVTFR-GHKRGIWSVEF  430 (768)
Q Consensus       376 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~----~~~---~-----------------~~~~~~-~~~~~v~~v~~  430 (768)
                      ....+..|+++....+|+.+++| .||.  +|.+    .++   +                 .+..+. .+..+|..+.+
T Consensus       174 i~~dg~~V~~I~~t~nGRIF~~G-~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I  250 (1311)
T KOG1900|consen  174 ISVDGVSVNCITYTENGRIFFAG-RDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI  250 (1311)
T ss_pred             eecCCceEEEEEeccCCcEEEee-cCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence            23346678899977788877765 5553  4432    111   0                 011222 45679999999


Q ss_pred             ccCCCEEEEeeCCCcEEEEeCCC
Q 004214          431 SPVDQVVITASGDKTIKIWSISD  453 (768)
Q Consensus       431 s~~~~~l~t~~~d~~i~iwd~~~  453 (768)
                      ....+++.+-+..|+|.+||+..
T Consensus       251 D~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  251 DNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccccceeeeeccCceEEEEEccC
Confidence            99999999999999999999965

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.97  E-value=11  Score=38.73  Aligned_cols=101  Identities=13%  Similarity=0.201  Sum_probs=69.2

Q ss_pred             ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce----eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214          420 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC----LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       420 ~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  495 (768)
                      ...++|.++.||+|.+.||+--.|++|.+++....+.    ..+.+..+..|...+|+.+ .-++.....| +-+|-+..
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p  141 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP  141 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence            3567999999999999999999999999999743322    2233344556888899876 5565555555 55665433


Q ss_pred             C-eEEEEeccCCCcEEEEEEcCCCCEEE
Q 004214          496 G-ECIATYDKHEDKIWALAVGKKTEMFA  522 (768)
Q Consensus       496 ~-~~~~~~~~~~~~v~~l~~s~~~~~l~  522 (768)
                      . ..++..+.|...|.-..|.++.+.+.
T Consensus       142 ekrslRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  142 EKRSLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             hhhhhhhhhhcccCccEEEEccccceEe
Confidence            2 33444456777777777888776543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=87.91  E-value=0.075  Score=53.99  Aligned_cols=143  Identities=10%  Similarity=0.119  Sum_probs=97.2

Q ss_pred             CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEE-EeeCCCcEEEEeCCCCceeE-
Q 004214          381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI-TASGDKTIKIWSISDGSCLK-  458 (768)
Q Consensus       381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-t~~~d~~i~iwd~~~~~~~~-  458 (768)
                      .......|-|.+.-++.++.+..+..||-. ++...... ..+....++|..++..++ .+-..+.+.+||+.+..... 
T Consensus        35 v~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL  112 (615)
T KOG2247|consen   35 VGPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL  112 (615)
T ss_pred             cccceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence            334456777877778898988888888843 33332222 334455677877765444 45567899999996532211 


Q ss_pred             Eee-cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214          459 TFE-GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA  528 (768)
Q Consensus       459 ~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg  528 (768)
                      .+. .|....  +.|++.+..++.+...|.+.|++-.+...+...-.|..++++++|.+.+..+ .++.|.
T Consensus       113 E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi-l~dcd~  180 (615)
T KOG2247|consen  113 ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI-LCDCDN  180 (615)
T ss_pred             hccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee-ecCcHH
Confidence            111 122333  7899999999999999999999988887777776699999999998877543 344333

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=87.45  E-value=31  Score=33.88  Aligned_cols=218  Identities=15%  Similarity=0.202  Sum_probs=118.0

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeCC------Cc-eEEEeeec-----ccCcEEEEEEecCCC-----------cEEEEEeC
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDSE------SR-CCVGVGTG-----HMGAVGAVAFSKKLQ-----------NFLVSGSS  348 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~-----------~~l~s~~~  348 (768)
                      +.+.+ .+-++....+...+||..      .. .++..+..     .....+.+.|+....           ..++.+++
T Consensus        30 ~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tE  108 (336)
T TIGR03118        30 YRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVTE  108 (336)
T ss_pred             ecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEeC
Confidence            44444 335666667888899876      11 22222221     223566677764321           23677889


Q ss_pred             CCeEEEEeCCCCCCCCccccccceeeEee-ccCCC-eEEEEEcc--CCCEEEE-EeCCCcEEEEeCCCCceE--EEEecc
Q 004214          349 DHTIKVWSFDGLSDDAEQPMNLKAKAVVA-AHGKD-INSLAVAP--NDSLVCT-GSQDRTACVWRLPDLVSV--VTFRGH  421 (768)
Q Consensus       349 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~-i~~~~~s~--~~~~l~~-~~~dg~i~i~d~~~~~~~--~~~~~~  421 (768)
                      ||+|.-|.........    . ....... ..... -..+++..  .+.+|.. --..++|.+||-.=.+..  ..+...
T Consensus       109 dGTisaW~p~v~~t~~----~-~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       109 DGTLSGWAPALGTTRM----T-RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             CceEEeecCcCCcccc----c-ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            9999999854221100    0 0111111 11122 23455543  2444444 446788999985322111  001100


Q ss_pred             -----CC-----------CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee--cCCCcEEEEEEEe------CCC
Q 004214          422 -----KR-----------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE--GHTSSVLRASFLT------RGA  477 (768)
Q Consensus       422 -----~~-----------~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~------~~~  477 (768)
                           -.           .|+-..-.++.+.=+.|..-|.|-+||+ +|..++++.  +.-...+.++..|      .|.
T Consensus       184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~  262 (336)
T TIGR03118       184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA  262 (336)
T ss_pred             CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence                 00           0111111222222233445588999997 688888885  2334456677655      356


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeccCCC------cEEEEEEcC
Q 004214          478 QIVSCGADGLVKLWTVRTGECIATYDKHED------KIWALAVGK  516 (768)
Q Consensus       478 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~l~~s~  516 (768)
                      +|+---.||+|..||..+|+.+..+....+      .+|.|.|..
T Consensus       263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            676666799999999999998888765443      468888875

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=87.28  E-value=63  Score=37.34  Aligned_cols=68  Identities=24%  Similarity=0.253  Sum_probs=51.1

Q ss_pred             CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe----e-----------c----CCCcEEEEEEEeCCCEEEEE
Q 004214          422 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF----E-----------G----HTSSVLRASFLTRGAQIVSC  482 (768)
Q Consensus       422 ~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~----~-----------~----~~~~v~~~~~s~~~~~l~s~  482 (768)
                      ...|.+++...-+.+++.+..||+|.++|-.+.+.+...    .           |    +-.++..++|||.+.-++.-
T Consensus       259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~  338 (753)
T PF11635_consen  259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI  338 (753)
T ss_pred             CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence            356778888888889999999999999998776554433    1           1    11234458899999999999


Q ss_pred             eCCCcEE
Q 004214          483 GADGLVK  489 (768)
Q Consensus       483 ~~dg~i~  489 (768)
                      ..+|.+.
T Consensus       339 ~~~~~~~  345 (753)
T PF11635_consen  339 DEDGKTK  345 (753)
T ss_pred             ecCCCce
Confidence            9998865

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=86.80  E-value=41  Score=34.66  Aligned_cols=42  Identities=10%  Similarity=0.241  Sum_probs=20.5

Q ss_pred             cEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214          487 LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA  528 (768)
Q Consensus       487 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg  528 (768)
                      .+.+||..+.+-...-.-....-...+..-+++.++.||.+.
T Consensus       291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~  332 (346)
T TIGR03547       291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS  332 (346)
T ss_pred             EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence            466888776543221111111112223344777788887653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.76  E-value=2.9  Score=26.94  Aligned_cols=40  Identities=20%  Similarity=0.222  Sum_probs=29.6

Q ss_pred             CCCCEEEEEe-CCCeEEEEECCCCeeeeeeecceeEeeEEe
Q 004214           84 SDGSTLISAG-RDKVVNLWDLRDYSCKLTVPTYEMVEAVCA  123 (768)
Q Consensus        84 ~d~~~L~s~~-~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~  123 (768)
                      |++++|+++. .++.|.++|..+++.+..++.......+++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            6778777655 578999999999998888876554444443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=86.14  E-value=35  Score=33.19  Aligned_cols=222  Identities=14%  Similarity=0.059  Sum_probs=107.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCceee---eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce---EEEeee
Q 004214          251 EEQYLAVATNIEQVQVYDLSSMSCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC---CVGVGT  324 (768)
Q Consensus       251 ~~~~l~~~~~~~~i~i~d~~~~~~~---~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~  324 (768)
                      .+++..++.-+.-+.++|+.+.+..   ..+.........+.    -.|+. ...+..|+-+.+.|+....   .+....
T Consensus       137 sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~----ISGn~-AYvA~~d~GL~ivDVSnp~sPvli~~~n  211 (370)
T COG5276         137 SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVA----ISGNY-AYVAWRDGGLTIVDVSNPHSPVLIGSYN  211 (370)
T ss_pred             cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEE----EecCe-EEEEEeCCCeEEEEccCCCCCeEEEEEe
Confidence            3456666665566666676554322   12222222212221    22443 5566678888899887542   222221


Q ss_pred             cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEE-EEccCCCEEEEEeCCCc
Q 004214          325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL-AVAPNDSLVCTGSQDRT  403 (768)
Q Consensus       325 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~dg~  403 (768)
                       ....+.++..+++ ..+++  -.+--+.+-|.......       ..... . ....+.++ .+.-.+++...+..+.-
T Consensus       212 -~g~g~~sv~vsdn-r~y~v--vy~egvlivd~s~~ssp-------~~~gs-y-et~~p~~~s~v~Vs~~~~Yvadga~g  278 (370)
T COG5276         212 -TGPGTYSVSVSDN-RAYLV--VYDEGVLIVDVSGPSSP-------TVFGS-Y-ETSNPVSISTVPVSGEYAYVADGAKG  278 (370)
T ss_pred             -cCCceEEEEecCC-eeEEE--EcccceEEEecCCCCCc-------eEeec-c-ccCCcccccceecccceeeeeccccC
Confidence             2236777777776 32333  33334566666543210       01111 1 11112222 23334666666666666


Q ss_pred             EEEEeCCCCce---EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEE
Q 004214          404 ACVWRLPDLVS---VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV  480 (768)
Q Consensus       404 i~i~d~~~~~~---~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  480 (768)
                      +.+-|+.+...   ...+......-..+..+  +.++..+..+ +..+-+....+......+....+.+...+-+.+.+.
T Consensus       279 l~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y  355 (370)
T COG5276         279 LPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIY  355 (370)
T ss_pred             ceeEeccCCCCCchhccccCCCccccceEEe--cCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEE
Confidence            66766654321   11111111122223322  4555555544 455556554444444444444445555555666888


Q ss_pred             EEeCCCcEEEEEC
Q 004214          481 SCGADGLVKLWTV  493 (768)
Q Consensus       481 s~~~dg~i~iwd~  493 (768)
                      +...++-+.||+.
T Consensus       356 ~~d~~~gl~i~~~  368 (370)
T COG5276         356 STDYNGGLSIIEY  368 (370)
T ss_pred             EeecCCCEEEEEe
Confidence            8888888888875

>KOG3380 consensus Actin-related protein Arp2/3 complex, subunit ARPC5 [Cytoskeleton]

Probab=85.78  E-value=9.7  Score=32.36  Aligned_cols=91  Identities=19%  Similarity=0.173  Sum_probs=64.8

Q ss_pred             hhhHHHHhhcccchHHHHHHHhhcCCch--------hHHHHHHHHHhchhhHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 004214          554 RGQELENAVLDADYTKAIQVAFELRRPH--------KLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTK  625 (768)
Q Consensus       554 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~  625 (768)
                      ...+++.++..++...|+..++....+.        +-+.++..++.. .+...|+.++..|+.++...|++||-+=+..
T Consensus        38 ~~~ev~sll~qg~~~~AL~~aL~~~P~~t~~q~vK~~a~~~v~~vL~~-ik~adI~~~v~~Ls~e~~DiLmKYiYkGm~~  116 (152)
T KOG3380|consen   38 DEREVRSLLTQGKSLEALQTALLNPPYGTKDQEVKDRALNVVLKVLTS-IKQADIEAAVKKLSTEEIDILMKYIYKGMEI  116 (152)
T ss_pred             ChHHHHHHHHcccHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence            4568889999999999999998754322        112222222221 1233799999999999999999999887876


Q ss_pred             C---CchHHHHHHHHHHhccCCc
Q 004214          626 P---KLCHVAQFVLFQLFNIHPP  645 (768)
Q Consensus       626 ~---~~~~~~~~~l~~~l~~~~~  645 (768)
                      |   ..+..++.|...++...|.
T Consensus       117 p~d~~s~~~LL~WHEk~~~~~Gv  139 (152)
T KOG3380|consen  117 PSDNSSCVSLLQWHEKLVAKSGV  139 (152)
T ss_pred             ccccchHHHHHHHHHHHHHhcCC
Confidence            4   4566677888877777654

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.63  E-value=9.8  Score=44.58  Aligned_cols=136  Identities=16%  Similarity=0.257  Sum_probs=88.5

Q ss_pred             eCCCcEEEEeCCCCceEEEEeccCCCeEEEEE--------ccCCCEEEEeeCCCcEEEEeCCCCce---e------EEee
Q 004214          399 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEF--------SPVDQVVITASGDKTIKIWSISDGSC---L------KTFE  461 (768)
Q Consensus       399 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~--------s~~~~~l~t~~~d~~i~iwd~~~~~~---~------~~~~  461 (768)
                      +-|..+.+|+.+++.....+.+-...|..|..        -|.=++++.-+.--.|.++-+...+.   .      .++.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            45788999999998777777776666666543        33334444444446677776533221   1      2222


Q ss_pred             cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC----CC---e-E----------------EEEec-cCCCcEEEEEEcC
Q 004214          462 GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR----TG---E-C----------------IATYD-KHEDKIWALAVGK  516 (768)
Q Consensus       462 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~----~~---~-~----------------~~~~~-~~~~~v~~l~~s~  516 (768)
                      .....|+++....+|+.+++|- ||  .+|.+.    +|   + |                +..+. .+.++|..+.+..
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence            3355788888777887666554 55  444431    11   1 1                11222 4677999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCC
Q 004214          517 KTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       517 ~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      ....+.+-++.|+|.+|++..
T Consensus       253 SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccceeeeeccCceEEEEEccC
Confidence            999999999999999999987

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=85.32  E-value=9.1  Score=42.50  Aligned_cols=72  Identities=22%  Similarity=0.277  Sum_probs=46.2

Q ss_pred             cCCCEEEEEeCCCcEEEEeCCC----CceEEEE--ec--------------------cCCCeEEEEEcc----CCCEEEE
Q 004214          390 PNDSLVCTGSQDRTACVWRLPD----LVSVVTF--RG--------------------HKRGIWSVEFSP----VDQVVIT  439 (768)
Q Consensus       390 ~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~--~~--------------------~~~~v~~v~~s~----~~~~l~t  439 (768)
                      ++...++++..||.+.......    +......  ..                    ....+.++++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4677888889999888887654    2111111  10                    113455666666    6789999


Q ss_pred             eeCCCcEEEEeCCCCceeEEee
Q 004214          440 ASGDKTIKIWSISDGSCLKTFE  461 (768)
Q Consensus       440 ~~~d~~i~iwd~~~~~~~~~~~  461 (768)
                      .+.|+++|+||+.+++++.+..
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999976653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=85.04  E-value=16  Score=35.91  Aligned_cols=115  Identities=18%  Similarity=0.299  Sum_probs=72.5

Q ss_pred             CCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEe------CCCcEEEEECCCCeeEEEecC-----cccee
Q 004214            9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS------DDATVRVWDLLAKKCVATLDK-----HFSRV   77 (768)
Q Consensus         9 dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~------~dg~I~iWd~~~~~~~~~l~~-----h~~~V   77 (768)
                      -..|++||..+.+-..--.+-.+.|++|.|..+.+  +++.|.      ....+..||+.+..- ..+.+     -.++|
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~--Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv   91 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQ--LLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPV   91 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCE--EEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcE
Confidence            56799999998886655556778999999985433  366663      456789999877653 23333     24778


Q ss_pred             EEEEEcC-CCCEEEEEe----CCCeEEEEECCCCeeeee--eecceeEeeEEecCC
Q 004214           78 TSMAITS-DGSTLISAG----RDKVVNLWDLRDYSCKLT--VPTYEMVEAVCAIPP  126 (768)
Q Consensus        78 ~~l~fs~-d~~~L~s~~----~dg~i~vWd~~~~~~~~~--~~~~~~v~~~~~~~~  126 (768)
                      +.+.+.. |+..+..+|    .+..|..||=.....+..  +.....+..+.+.+-
T Consensus        92 ~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l  147 (281)
T PF12768_consen   92 TALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPL  147 (281)
T ss_pred             EEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEec
Confidence            8888743 444444333    234677787666655544  222334555555443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=84.41  E-value=5.8  Score=35.99  Aligned_cols=31  Identities=13%  Similarity=0.114  Sum_probs=25.8

Q ss_pred             CcEEEEEEcCCC------CEEEEEeCCCcEEEEEcCC
Q 004214          507 DKIWALAVGKKT------EMFATGGSDALVNLWHDST  537 (768)
Q Consensus       507 ~~v~~l~~s~~~------~~l~s~~~dg~v~vw~~~~  537 (768)
                      ..+.+++|||.|      .+|++...+|.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            478899999954      3788999999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=84.40  E-value=39  Score=35.98  Aligned_cols=31  Identities=10%  Similarity=0.359  Sum_probs=24.9

Q ss_pred             CcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214          465 SSVLRASFLTRGAQIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       465 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  495 (768)
                      ..|.+++..+..+.|++...+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3488899988889999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=84.03  E-value=4.8  Score=25.91  Aligned_cols=40  Identities=20%  Similarity=0.238  Sum_probs=28.3

Q ss_pred             eCCCEEEEEe-CCCcEEEEECCCCeEEEEeccCCCcEEEEEE
Q 004214          474 TRGAQIVSCG-ADGLVKLWTVRTGECIATYDKHEDKIWALAV  514 (768)
Q Consensus       474 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~  514 (768)
                      |++++|+++. .++.|.++|..+++.+..+.. ......++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence            5677776655 478999999999998888765 333344544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=83.96  E-value=15  Score=37.59  Aligned_cols=164  Identities=11%  Similarity=0.083  Sum_probs=88.0

Q ss_pred             CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC----CeE-EEEEccCCCEEEEEeCCC
Q 004214          328 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK----DIN-SLAVAPNDSLVCTGSQDR  402 (768)
Q Consensus       328 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~i~-~~~~s~~~~~l~~~~~dg  402 (768)
                      ..+..+-..|+|+. +..-+. ..+.++++........        .......+    .|+ ++..-..|.-+.+++.||
T Consensus       221 ~~v~qllL~Pdg~~-LYv~~g-~~~~v~~L~~r~l~~r--------kl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG  290 (733)
T COG4590         221 SDVSQLLLTPDGKT-LYVRTG-SELVVALLDKRSLQIR--------KLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG  290 (733)
T ss_pred             cchHhhEECCCCCE-EEEecC-CeEEEEeecccccchh--------hhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence            45667778888774 444333 5677887764321111        00000011    111 111223456678888899


Q ss_pred             cEEEE-eCCCC-c----eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC
Q 004214          403 TACVW-RLPDL-V----SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG  476 (768)
Q Consensus       403 ~i~i~-d~~~~-~----~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  476 (768)
                      .|.-| |.+.. .    .++.++-...++..+.-..+.+-+++-+..|++.++.....+.+- ++.-...+.-+.+||++
T Consensus       291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~  369 (733)
T COG4590         291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQ  369 (733)
T ss_pred             ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCccc
Confidence            88877 44322 1    111222122333333323334567777778888877654333322 22222355568999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEec
Q 004214          477 AQIVSCGADGLVKLWTVRTGECIATYD  503 (768)
Q Consensus       477 ~~l~s~~~dg~i~iwd~~~~~~~~~~~  503 (768)
                      .+|++-. .|.++++.+++..+--++.
T Consensus       370 ~~Ll~e~-~gki~~~~l~Nr~Peisws  395 (733)
T COG4590         370 AYLLSED-QGKIRLAQLENRNPEISWS  395 (733)
T ss_pred             chheeec-CCceEEEEecCCCCCccHH
Confidence            9998754 4679999887765544443

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.87  E-value=43  Score=39.83  Aligned_cols=72  Identities=15%  Similarity=0.188  Sum_probs=42.3

Q ss_pred             cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeE
Q 004214          421 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC  498 (768)
Q Consensus       421 ~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~  498 (768)
                      +..++.+..+......+... .-+.+-+|+.........+...     ....++++..++++..||.+..||...+..
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  197 IEYESLQVLYYSPTKILIGF-NRGLVVIKDRASKYVQSAYLPN-----GQLESRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             cccccceeeeecCCCcceee-eeeeeeehhcccccchhhcccc-----cccCccCCceEEEEEecCCEEeeecCCCce
Confidence            44555555555444444333 3366666665443333333211     111277888999999999999999888754

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=83.51  E-value=68  Score=34.40  Aligned_cols=71  Identities=15%  Similarity=0.266  Sum_probs=50.1

Q ss_pred             CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCcc-ceeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004214           29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-SRVTSMAITSDGSTLISAGRDKVVNLWDLRD  105 (768)
Q Consensus        29 h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~-~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~  105 (768)
                      -...|.++.+...|.   +..|+.|| +..+|..+++.++.-.... .+|..+..+-.| .|..++.+| |.+.+.+.
T Consensus       163 ~d~~V~aLv~D~~g~---lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G  234 (671)
T COG3292         163 KDTPVVALVFDANGR---LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEG  234 (671)
T ss_pred             cCccceeeeeeccCc---EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhh
Confidence            356788888888765   78889999 7778888888877655444 567666666555 566677666 66666554

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=83.39  E-value=72  Score=34.57  Aligned_cols=117  Identities=15%  Similarity=0.105  Sum_probs=62.4

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCC---eEEEEEccCCCEEEEeeC-------------CCcEEEE
Q 004214          386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRG---IWSVEFSPVDQVVITASG-------------DKTIKIW  449 (768)
Q Consensus       386 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---v~~v~~s~~~~~l~t~~~-------------d~~i~iw  449 (768)
                      +..-++|.+++...  ..+..+|+. |+.+.........   =..+..-|+|++|+.+..             .-.|..+
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev  229 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV  229 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred             eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence            56678888887665  778888874 5554444322211   246778899999888771             1225555


Q ss_pred             eCCCCceeEEee--cCC-------------------------CcEEEEEEEe-CCCEEEEEeCCCcEEEEECCCCeEEEE
Q 004214          450 SISDGSCLKTFE--GHT-------------------------SSVLRASFLT-RGAQIVSCGADGLVKLWTVRTGECIAT  501 (768)
Q Consensus       450 d~~~~~~~~~~~--~~~-------------------------~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~  501 (768)
                      | .+|+.+..+.  .|-                         -.+.++.+.+ ++..++|+-.-..|...|.++++....
T Consensus       230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi  308 (477)
T PF05935_consen  230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI  308 (477)
T ss_dssp             --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred             C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence            6 6666655432  010                         2478889988 444555544445788889889988887


Q ss_pred             eccCC
Q 004214          502 YDKHE  506 (768)
Q Consensus       502 ~~~~~  506 (768)
                      +..|.
T Consensus       309 lg~~~  313 (477)
T PF05935_consen  309 LGPPG  313 (477)
T ss_dssp             ES-ST
T ss_pred             eCCCC
Confidence            76543

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=82.92  E-value=6.6  Score=40.08  Aligned_cols=172  Identities=11%  Similarity=0.020  Sum_probs=93.7

Q ss_pred             eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe--eecccC----cEE-EEEEecCCCcEEEEEeCC
Q 004214          277 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV--GTGHMG----AVG-AVAFSKKLQNFLVSGSSD  349 (768)
Q Consensus       277 ~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~----~v~-~~~~~~~~~~~l~s~~~d  349 (768)
                      .+......+..+-  ..|+++. +..-+. ..+.++++.+......  .....+    .|+ ++..-. |..-+.+++.|
T Consensus       215 ~L~~~~~~v~qll--L~Pdg~~-LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~d  289 (733)
T COG4590         215 LLSVPFSDVSQLL--LTPDGKT-LYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHED  289 (733)
T ss_pred             hcCCCccchHhhE--ECCCCCE-EEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCC
Confidence            3444455555553  5566665 444333 6778887765432111  111111    111 111112 23347778888


Q ss_pred             CeEEEE-eCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEE
Q 004214          350 HTIKVW-SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV  428 (768)
Q Consensus       350 g~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v  428 (768)
                      |.|.-| |++.... +    .......+.-...++..+.-..+.+-+++-+..|++.++.....+.+.. ..-...+.-+
T Consensus       290 G~vsQWFdvr~~~~-p----~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~  363 (733)
T COG4590         290 GLVSQWFDVRRDGQ-P----HLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLV  363 (733)
T ss_pred             CceeeeeeeecCCC-C----cceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCccee
Confidence            888877 4443221 1    1122222222334444444444566778888888888887655444332 2223366778


Q ss_pred             EEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214          429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTF  460 (768)
Q Consensus       429 ~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~  460 (768)
                      ++||++.++++-.. |.|+++.+++..+--++
T Consensus       364 ~~Sp~~~~Ll~e~~-gki~~~~l~Nr~Peisw  394 (733)
T COG4590         364 AMSPNQAYLLSEDQ-GKIRLAQLENRNPEISW  394 (733)
T ss_pred             eeCcccchheeecC-CceEEEEecCCCCCccH
Confidence            99999999988655 78999998766544333

>TIGR01063 gyrA DNA gyrase, A subunit

Probab=82.62  E-value=1e+02  Score=35.83  Aligned_cols=206  Identities=10%  Similarity=0.004  Sum_probs=98.3

Q ss_pred             ccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeec-ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECC---Cc--
Q 004214          199 LPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV-GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS---SM--  272 (768)
Q Consensus       199 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~---~~--  272 (768)
                      .+....++..+.+|.++.............-.-..... ...+.+..+ +.......++..++.|.+......   ..  
T Consensus       493 i~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~-~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r  571 (800)
T TIGR01063       493 IARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQL-LVASTHDYLLFFTNRGKVYWLKVYQIPEASR  571 (800)
T ss_pred             cCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCCCCeeEEE-EEecCCCeEEEEeCCCcEEEEEhhhCcCCCc
Confidence            44556678899999988776553321000000000000 012222222 233455667777777887776542   21  


Q ss_pred             ----eee---eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE-------EEeeecccCcEEEEEEecC
Q 004214          273 ----SCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-------VGVGTGHMGAVGAVAFSKK  338 (768)
Q Consensus       273 ----~~~---~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~  338 (768)
                          ..+   ..+......+.++...-..++. .++..+.+|.++-.++..-..       ...+.. .+.+..+.....
T Consensus       572 ~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~-~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~~~  649 (800)
T TIGR01063       572 TAKGKPIVNLLPLQPDERITAILSVKEFDDGL-YLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLTSG  649 (800)
T ss_pred             CCCCcCHHHhccCCCCCeEEEEEEeccCCCCC-EEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEEEEeCC
Confidence                111   1122223333333211123344 488889999999887643211       111222 233434333333


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214          339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP  410 (768)
Q Consensus       339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  410 (768)
                      .. .++..+..|.+..+............ ..... .....+..|.++..-.++..++..+..|.++...+.
T Consensus       650 ~d-~lll~Ts~Gr~~r~~v~eIp~~gr~~-~Gv~~-i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~  718 (800)
T TIGR01063       650 DD-EVMLGSKNGKAVRFPEEDVRPMGRAA-RGVRG-IKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIE  718 (800)
T ss_pred             CC-EEEEEECCCcEEEEEhhhcCCcCCCC-CCeec-ccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHH
Confidence            23 46667777776666554321111000 00000 111223345555444455578888899988888754

This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=82.38  E-value=82  Score=34.52  Aligned_cols=260  Identities=15%  Similarity=0.121  Sum_probs=119.3

Q ss_pred             ccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeeccc-CCceeEEEEecCCCCEEEEEeCCCcEEE--EECCCceee
Q 004214          199 LPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY-NEEILDLKFLGEEEQYLAVATNIEQVQV--YDLSSMSCS  275 (768)
Q Consensus       199 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~~~~i~i--~d~~~~~~~  275 (768)
                      ..++..++.+..+|.++...+.....     .......+. .....++.+...++.++.+|+..|.=.+  |.....+.+
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~-----~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~  293 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGG-----SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVL  293 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEE-----EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEE
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCC-----eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEE
Confidence            45567789999999999888765432     122223333 5556777777555558888887655444  443333444


Q ss_pred             eeeeCCccceEEEeeeee-cCCCE------EEEEEe---CCCeEEEEeCCCceE--EEeeecc--cCcEEEEEEecCCCc
Q 004214          276 YVLAGHSEIVLCLDTCAL-SSGKI------LIVTGS---KDNSVRLWDSESRCC--VGVGTGH--MGAVGAVAFSKKLQN  341 (768)
Q Consensus       276 ~~~~~~~~~v~~l~~~~~-~~~~~------~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~  341 (768)
                      ..+.. -+++..+...-. ..+..      .+++++   .+|.+++..-.-+-.  ......-  ...++.+........
T Consensus       294 ~~~~N-~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~  372 (504)
T PF10433_consen  294 DSLPN-WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHS  372 (504)
T ss_dssp             EEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBS
T ss_pred             EeccC-cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCce
Confidence            44443 355666553211 11121      244443   567888875322211  1111111  234445544432244


Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCccccccceee--EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 004214          342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA--VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR  419 (768)
Q Consensus       342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  419 (768)
                      +++.+..+.+ +++.+.......    ......  .+......+.+-.+.  +..++=.+.. .|++.+....+......
T Consensus       373 ~lv~S~~~~T-~vl~~~~~d~~e----~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~  444 (504)
T PF10433_consen  373 YLVLSFPNET-RVLQISEGDDGE----EVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWK  444 (504)
T ss_dssp             EEEEEESSEE-EEEEES----SS----EEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE
T ss_pred             EEEEEcCCce-EEEEEecccCCc----chhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEe
Confidence            6666655544 455553100000    000000  001111112222222  4444444443 48888877776666543


Q ss_pred             c-cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee-----cCCCcEEEEEEEe
Q 004214          420 G-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-----GHTSSVLRASFLT  474 (768)
Q Consensus       420 ~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~  474 (768)
                      . ....|.+.+..  +..++.+..++.+..+.+..........     .....|.|+...|
T Consensus       445 ~~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  445 PPAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             -TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             CCCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            3 34456565555  4566666667889999887766543322     1456777776655

...

>PLN02193 nitrile-specifier protein

Probab=82.37  E-value=78  Score=34.26  Aligned_cols=135  Identities=11%  Similarity=0.067  Sum_probs=64.7

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCceEE--EEe--ccCCCeEEEEEccCCCEEEEeeCCC-----cEEEEeCCCCce
Q 004214          391 NDSLVCTGSQDR-----TACVWRLPDLVSVV--TFR--GHKRGIWSVEFSPVDQVVITASGDK-----TIKIWSISDGSC  456 (768)
Q Consensus       391 ~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~--~~~~~v~~v~~s~~~~~l~t~~~d~-----~i~iwd~~~~~~  456 (768)
                      ++.+++.|+.++     .+..||+.+.+-..  .+.  .....-.+++. -++++.+.|+.++     .+..||+.+.+-
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence            566777777653     57888887653221  110  01111112222 2466667776543     467788766432


Q ss_pred             eEEeec----CCCcEEEEEEEeCCCEEEEEeCC----CcEEEEECCCCeEEEEecc---CCCcEEEEEEcCCCCEEEEEe
Q 004214          457 LKTFEG----HTSSVLRASFLTRGAQIVSCGAD----GLVKLWTVRTGECIATYDK---HEDKIWALAVGKKTEMFATGG  525 (768)
Q Consensus       457 ~~~~~~----~~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~s~~  525 (768)
                      .. +..    ...........-+++..+.++.+    ..+.+||+.+.+....-..   +......-+..-+++.++.||
T Consensus       307 ~~-~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG  385 (470)
T PLN02193        307 FH-CSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGG  385 (470)
T ss_pred             Ee-CCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECC
Confidence            11 110    00000011122356777777655    3589999988764332110   111111112223567777777


Q ss_pred             CC
Q 004214          526 SD  527 (768)
Q Consensus       526 ~d  527 (768)
                      .+
T Consensus       386 ~~  387 (470)
T PLN02193        386 EI  387 (470)
T ss_pred             cc
Confidence            53

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.90  E-value=33  Score=36.14  Aligned_cols=74  Identities=18%  Similarity=0.224  Sum_probs=45.4

Q ss_pred             CeEEEEEccCCCEEEEEeCCCcEEEEeC---------CCCceEEEEec-----------cCCCeEEEEEccCC---CEEE
Q 004214          382 DINSLAVAPNDSLVCTGSQDRTACVWRL---------PDLVSVVTFRG-----------HKRGIWSVEFSPVD---QVVI  438 (768)
Q Consensus       382 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~---------~~~~~~~~~~~-----------~~~~v~~v~~s~~~---~~l~  438 (768)
                      .|..+..++.|..++.++.+|.+..+=.         ++++.....+.           ..-.+..++|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            4677888999999999999986555431         23332221110           11134456777764   5666


Q ss_pred             EeeCCCcEEEEeCCCCc
Q 004214          439 TASGDKTIKIWSISDGS  455 (768)
Q Consensus       439 t~~~d~~i~iwd~~~~~  455 (768)
                      .-+.|..||+||+...+
T Consensus       185 iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EEecCcEEEEEecCCcc
Confidence            66677888888876544

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.87  E-value=1e+02  Score=35.76  Aligned_cols=269  Identities=15%  Similarity=0.043  Sum_probs=0.0

Q ss_pred             CCceEEEEecCeEEEEeeccCcccceeeE----EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeee
Q 004214          202 NQGLLCVTADQQLLLYTTVEVPEKKMELI----LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV  277 (768)
Q Consensus       202 ~~~l~~~~~dg~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~  277 (768)
                      ++.+++|+.+|.+..|.+...........    ......-...+|..+...  ...-++..-.++.+.++++.+.+....
T Consensus        26 ~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~--~~~~~ll~l~dsqi~~~~l~~~~~~~~  103 (877)
T KOG2063|consen   26 GNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVC--ASLELLLILSDSQIAVHKLPELEPVPS  103 (877)
T ss_pred             CCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhc--chhcchheecCCcceeeecCccccccc


Q ss_pred             eeCCccceEEEeeeeecCCC----EEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEE
Q 004214          278 LAGHSEIVLCLDTCALSSGK----ILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIK  353 (768)
Q Consensus       278 ~~~~~~~v~~l~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~  353 (768)
                      ...-.+...-........++    .+.+....-.....|+-+.+.....--+-.....+++|.-.   .++++-.+....
T Consensus       104 ~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---~~c~~~~~~~~i  180 (877)
T KOG2063|consen  104 GTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAWCGH---IVCLGLKKSYYI  180 (877)
T ss_pred             ccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhcccce---eEEEeecceeEE


Q ss_pred             EEeCCCCCCCCccccccceeeEeecc-CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eEEEEeccCCCeEEEEEc
Q 004214          354 VWSFDGLSDDAEQPMNLKAKAVVAAH-GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-SVVTFRGHKRGIWSVEFS  431 (768)
Q Consensus       354 iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~v~~s  431 (768)
                      +|.-..+        ........... ...-..+.--+++..++.| .|+...+-|..... ...++.-...+..-+.-+
T Consensus       181 i~~~~~~--------~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~-kd~~gv~vd~~G~~~~~~~l~ws~~P~~v~~~~  251 (877)
T KOG2063|consen  181 INNTSKG--------VGPNLFPSSMDNESRKPLIKSLSDQSELLLG-KDNIGVVVDLNGIIAQRGTLVWSEVPLSVVVES  251 (877)
T ss_pred             EecCCCc--------cccceeeeccccccCCCeEEEecCCceEEEc-cCceEEEEecCCcccCCCceEecccchhhcccC


Q ss_pred             cCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEE
Q 004214          432 PVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL  490 (768)
Q Consensus       432 ~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i  490 (768)
                      |    .+.|-.++.|.||+..++.+++++.  .-.-..--++.+.+.+++.+..+...+
T Consensus       252 P----YlIa~~~~~veI~s~~~~qlvQSI~--~~~~~~~l~s~~~~i~~~~~~s~v~~L  304 (877)
T KOG2063|consen  252 P----YLIALLDRSVEIRSKLDGQLVQSIT--PLSNGRSLLSAHNGIIFVASLSNVWIL  304 (877)
T ss_pred             c----eEEEEccccEEEEeccCHHHhhccc--cccccceeeecCCcEEEEEeccceEEE

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=81.70  E-value=1.2e+02  Score=35.91  Aligned_cols=186  Identities=15%  Similarity=0.203  Sum_probs=96.2

Q ss_pred             eCCCeEEEEeCCCceEEEeeecc-cCcEEEEEE---ec----CC-CcEEEEEeC---------CCeEEEEeCCCCCCCCc
Q 004214          304 SKDNSVRLWDSESRCCVGVGTGH-MGAVGAVAF---SK----KL-QNFLVSGSS---------DHTIKVWSFDGLSDDAE  365 (768)
Q Consensus       304 ~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~---~~----~~-~~~l~s~~~---------dg~i~iwd~~~~~~~~~  365 (768)
                      +..+.|.+.+..+++.+..+.-. ...+.++..   ..    .+ +.++++|..         .|.+.++|+-.--+.+.
T Consensus      1001 ~~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepg 1080 (1366)
T KOG1896|consen 1001 GEQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPG 1080 (1366)
T ss_pred             cccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCC
Confidence            34556777766666655443321 122333322   21    11 347777743         48899999764322222


Q ss_pred             ccccc-ceeeEe-eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCceEEEEeccCCCeEEEEEccCCCEEEEeeC
Q 004214          366 QPMNL-KAKAVV-AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP-DLVSVVTFRGHKRGIWSVEFSPVDQVVITASG  442 (768)
Q Consensus       366 ~~~~~-~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~  442 (768)
                      .|... +..... ....++|.+++ .-+|.++.+  ....|.+|+++ ....+.. .--.-++.-....--.++|+.|.-
T Consensus      1081 kP~t~~KlKel~~eE~KGtVsavc-eV~G~l~~~--~GqKI~v~~l~r~~~ligV-aFiD~~~yv~s~~~vknlIl~gDV 1156 (1366)
T KOG1896|consen 1081 KPFTKNKLKELYIEEQKGTVSAVC-EVRGHLLSS--QGQKIIVRKLDRDSELIGV-AFIDLPLYVHSMKVVKNLILAGDV 1156 (1366)
T ss_pred             CCcccceeeeeehhhcccceEEEE-EeccEEEEc--cCcEEEEEEeccCCcceee-EEeccceeEEehhhhhhheehhhh
Confidence            22221 122222 23345555544 346654443  33579999994 4333322 112223333333334667777776


Q ss_pred             CCcEEEEeCCCCc-eeEEee--cCCCcEEEEEEEeCCC--EEEEEeCCCcEEEEEC
Q 004214          443 DKTIKIWSISDGS-CLKTFE--GHTSSVLRASFLTRGA--QIVSCGADGLVKLWTV  493 (768)
Q Consensus       443 d~~i~iwd~~~~~-~~~~~~--~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iwd~  493 (768)
                      -..|.+.-....- .+.-+.  ...-.+.++.|.-+|.  +++++..+++|++|-.
T Consensus      1157 ~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1157 MKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred             hhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEe
Confidence            6667766554322 222222  1223577788888876  5688889999988754

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=81.60  E-value=68  Score=33.06  Aligned_cols=199  Identities=12%  Similarity=0.155  Sum_probs=108.3

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEE-EEEEe-CC---CeEEEEeCC--CceEEEe
Q 004214          250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKIL-IVTGS-KD---NSVRLWDSE--SRCCVGV  322 (768)
Q Consensus       250 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-l~~~~-~d---g~i~iwd~~--~~~~~~~  322 (768)
                      +...+++.....+-+.+||+........-.+.-..| .+...+.-.++.. |+.++ .+   ..|++|.+.  ++.....
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNV-Dvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v  144 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNV-DVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV  144 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEE-EEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred             cccceEEEEeCCCCEEEEcCCCcEEEeecCCCccee-eeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence            344577777778999999998766544323333333 2222222233332 33443 32   468999664  4443222


Q ss_pred             ee------cccCcEEEEEEe--c-CCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC
Q 004214          323 GT------GHMGAVGAVAFS--K-KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS  393 (768)
Q Consensus       323 ~~------~~~~~v~~~~~~--~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  393 (768)
                      ..      .....+..+|+-  | ++..+++....+|.+..|.+.......   ......+.+. -...+..+.......
T Consensus       145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~---v~~~lVR~f~-~~sQ~EGCVVDDe~g  220 (381)
T PF02333_consen  145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK---VSATLVREFK-VGSQPEGCVVDDETG  220 (381)
T ss_dssp             CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS---EEEEEEEEEE--SS-EEEEEEETTTT
T ss_pred             CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc---EeeEEEEEec-CCCcceEEEEecccC
Confidence            11      112346677763  3 355678888899999999886322111   1112233332 245788999999888


Q ss_pred             EEEEEeCCCcEEEEeCCCC-----ceEEEEec--cCCCeEEEEEcc--CC--CEEEEeeCCCcEEEEeCCC
Q 004214          394 LVCTGSQDRTACVWRLPDL-----VSVVTFRG--HKRGIWSVEFSP--VD--QVVITASGDKTIKIWSISD  453 (768)
Q Consensus       394 ~l~~~~~dg~i~i~d~~~~-----~~~~~~~~--~~~~v~~v~~s~--~~--~~l~t~~~d~~i~iwd~~~  453 (768)
                      .|..+-.+.-|.-|+.+..     ..+....+  ....|..+++-.  ++  -+|++.-.+++..||+...
T Consensus       221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred             CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence            9999999988888887522     22222222  334677777643  33  2445555678899999764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=81.25  E-value=47  Score=30.91  Aligned_cols=176  Identities=13%  Similarity=0.104  Sum_probs=0.0

Q ss_pred             EEeeCC-CccEEEEEeCCCcEEEEECC--CCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEE-------EEECCCC
Q 004214           37 LFHPDT-DKSLLFSGSDDATVRVWDLL--AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN-------LWDLRDY  106 (768)
Q Consensus        37 ~~spd~-~~~~l~sg~~dg~I~iWd~~--~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~-------vWd~~~~  106 (768)
                      ++.+.| +.  |+.+...+.|.+|++.  ..+.+.+|..- +.|..|.++..|+||+|.-.+....       ..+|+..
T Consensus        22 ~~c~~g~d~--Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~   98 (215)
T PF14761_consen   22 AVCCGGPDA--LFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ   98 (215)
T ss_pred             eeeccCCce--EEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh


Q ss_pred             ----eeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214          107 ----SCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI  182 (768)
Q Consensus       107 ----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~  182 (768)
                          .++........+.....-+.+..+...--...........-.....++.++.+ .+.+|.+.........-.-...
T Consensus        99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~-~l~lf~l~~~~~~~~~~~~lDF  177 (215)
T PF14761_consen   99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN-KLVLFTLKYQTIQSEKFSFLDF  177 (215)
T ss_pred             cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC-EEEEEEEEEEEEecccccEEec


Q ss_pred             cccccCcccceeEEEEccCCCceEEEEecCeEEE
Q 004214          183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL  216 (768)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~  216 (768)
                      .........++......--++.+++.+......+
T Consensus       178 e~~l~~~~~~~~p~~v~ic~~yiA~~s~~ev~Vl  211 (215)
T PF14761_consen  178 ERSLIDHIDNFKPTQVAICEGYIAVMSDLEVLVL  211 (215)
T ss_pred             hhhhhheecCceEEEEEEEeeEEEEecCCEEEEE

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=81.25  E-value=96  Score=34.51  Aligned_cols=247  Identities=15%  Similarity=0.156  Sum_probs=119.5

Q ss_pred             CCCCEEEEEeCCCcEEEEECC-Cceeeeeee-CCccceEEEeeeeecCCCEEEEEEeCCCe-EEEEeCCCc---------
Q 004214          250 EEEQYLAVATNIEQVQVYDLS-SMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNS-VRLWDSESR---------  317 (768)
Q Consensus       250 ~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~-~~~~~v~~l~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~---------  317 (768)
                      ++.+.+-.|-+...|.-|=+. +.+.+..++ ..+..|.|++.....++..+.+.|-.++. -++-.+..+         
T Consensus        37 ~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~  116 (670)
T PF10395_consen   37 PDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTV  116 (670)
T ss_pred             CCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcccccccc
Confidence            344555555554555555443 445555543 34567788875554454444555544432 343332221         


Q ss_pred             --e--EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC
Q 004214          318 --C--CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS  393 (768)
Q Consensus       318 --~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  393 (768)
                        +  ....++ -...|..+.+.++++ .+++.-.+|.|.+||................... ..+..-|..........
T Consensus       117 ~~e~~~~~~~k-l~~kvv~Ik~~~~~~-~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~-v~ys~fv~~~~~~~~~~  193 (670)
T PF10395_consen  117 NSETTNEFELK-LDDKVVGIKFSSDGK-IIYVVLENGSIQIYDFSENSLEKVPQLKLKSSIN-VSYSKFVNDFELENGKD  193 (670)
T ss_pred             CccccceEEEE-cccceEEEEEecCCC-EEEEEEcCCcEEEEeccccccccccccccccccc-eehhhhhcccccccCCc
Confidence              1  011111 356788999998766 7888999999999999332211100000000000 00112222222112233


Q ss_pred             EEEEEeC-CC---cEEEEeC-CCCceEEEEe---ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC--
Q 004214          394 LVCTGSQ-DR---TACVWRL-PDLVSVVTFR---GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH--  463 (768)
Q Consensus       394 ~l~~~~~-dg---~i~i~d~-~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~--  463 (768)
                      ++++.+. ++   ..+++.+ .+...+..+.   .+........|......|..- .+++|.+|++...+..+++.-.  
T Consensus       194 ~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~i  272 (670)
T PF10395_consen  194 LLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSI  272 (670)
T ss_pred             eEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechh
Confidence            4444443 32   4666776 1222333332   122223333333333333333 6689999999888877766522  


Q ss_pred             ---C-CcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 004214          464 ---T-SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY  502 (768)
Q Consensus       464 ---~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  502 (768)
                         . ..+.++.- |..++++.+. +..|++.|+.-...+..+
T Consensus       273 i~~~~~~~vSl~~-~s~nRvLLs~-~nkIyLld~~~~siLse~  313 (670)
T PF10395_consen  273 IDKESDDLVSLKP-PSPNRVLLSV-NNKIYLLDLKFESILSEF  313 (670)
T ss_pred             hccccccceEeec-CCCCeEEEEc-CCEEEEEeehhhhhhhhh
Confidence               1 12333322 3333443332 468999998654444433

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=80.81  E-value=69  Score=32.59  Aligned_cols=64  Identities=13%  Similarity=0.188  Sum_probs=34.8

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCce--EEEEeccCCCeEEEEEccCCCEEEEeeCCC----cEEEEeCCCCc
Q 004214          391 NDSLVCTGSQD-----RTACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQVVITASGDK----TIKIWSISDGS  455 (768)
Q Consensus       391 ~~~~l~~~~~d-----g~i~i~d~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~----~i~iwd~~~~~  455 (768)
                      ++++.+.|+..     ..+..||+.+.+=  +..+... ......+...++++.+.|+.++    .+.+||..+.+
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            56777777642     3578888776532  2222211 1112222334577777777654    35688887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02153 epithiospecifier protein

Probab=80.52  E-value=73  Score=32.71  Aligned_cols=23  Identities=17%  Similarity=0.263  Sum_probs=15.0

Q ss_pred             cCCCEEEEEeCC-----------CcEEEEeCCCC
Q 004214          390 PNDSLVCTGSQD-----------RTACVWRLPDL  412 (768)
Q Consensus       390 ~~~~~l~~~~~d-----------g~i~i~d~~~~  412 (768)
                      -++++++.|+.+           ..+.+||..+.
T Consensus       136 ~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~  169 (341)
T PLN02153        136 DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG  169 (341)
T ss_pred             ECCEEEEECCccCCCccCCCcccceEEEEECCCC
Confidence            356777777754           14677887764

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=80.46  E-value=65  Score=32.07  Aligned_cols=177  Identities=11%  Similarity=0.096  Sum_probs=88.1

Q ss_pred             CcEEEEECCCceeeeeeeCC------ccceEEEeeeeecC---CCEEEEEEeCCCeEEEEeCCCceEEEeeecccC----
Q 004214          262 EQVQVYDLSSMSCSYVLAGH------SEIVLCLDTCALSS---GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMG----  328 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~------~~~v~~l~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----  328 (768)
                      ..|.+||+.+.+.++.+.-.      .+....+..-..+.   +....++-+..+.|.++|+.+++..+....+..    
T Consensus        34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD  113 (287)
T ss_dssp             -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred             cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence            46778888888877665432      34445554212121   134344545557899999999887766543221    


Q ss_pred             ---------------cEEEEEEec---CCCcEEEEEeCCCeEEEEeCCCC--CCCCccccc--cceeeEeeccCCCeEEE
Q 004214          329 ---------------AVGAVAFSK---KLQNFLVSGSSDHTIKVWSFDGL--SDDAEQPMN--LKAKAVVAAHGKDINSL  386 (768)
Q Consensus       329 ---------------~v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~--~~~~~~~~~~~~~i~~~  386 (768)
                                     .+..++.+|   +++ .|.-..-.+ -++|.++..  .........  ......+.........+
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r-~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~  191 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGR-WLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGM  191 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS--EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEE
T ss_pred             ccceeccCceEecCCCccccccCCCCCCcc-EEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceE
Confidence                           244444444   322 232222111 123332211  000000000  01111111122466789


Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCCCCc---eEEEE-ecc--CCCeEEEEEcc--CCCEEEEe
Q 004214          387 AVAPNDSLVCTGSQDRTACVWRLPDLV---SVVTF-RGH--KRGIWSVEFSP--VDQVVITA  440 (768)
Q Consensus       387 ~~s~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~-~~~--~~~v~~v~~s~--~~~~l~t~  440 (768)
                      +++++|.++++--..+.|..|+..+.-   ....+ ...  -..+..+.+.+  +|.+.+.+
T Consensus       192 ~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  192 AIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             EECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            999999999999999999999987621   11112 222  24567888888  66655554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=80.31  E-value=69  Score=34.13  Aligned_cols=31  Identities=26%  Similarity=0.353  Sum_probs=25.5

Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          507 DKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       507 ~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      ..|.+++..+..+.+++...+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3499999999999999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PRK05560 DNA gyrase subunit A; Validated

Probab=80.11  E-value=1.3e+02  Score=35.19  Aligned_cols=276  Identities=8%  Similarity=-0.003  Sum_probs=0.0

Q ss_pred             cCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEEC---------C
Q 004214          200 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL---------S  270 (768)
Q Consensus       200 ~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~---------~  270 (768)
                      ++.+.++..+.+|.++.............-.-.....--.+......+.......++..++.|.+.....         .
T Consensus       496 ~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~  575 (805)
T PRK05560        496 PEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTA  575 (805)
T ss_pred             CCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCC


Q ss_pred             Cceee---eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-------ceEEEeeecccCcEEEEEEecCCC
Q 004214          271 SMSCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-------RCCVGVGTGHMGAVGAVAFSKKLQ  340 (768)
Q Consensus       271 ~~~~~---~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~  340 (768)
                      .|..+   ..+......+.++..--..+... ++..+.+|.++--++..       +.....+......+.....+....
T Consensus       576 ~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~-lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~d~  654 (805)
T PRK05560        576 RGRPIVNLLPLEPGEKITAILPVREFDDDKY-LFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGDDD  654 (805)
T ss_pred             CCeEHHHhcCCCCCceEEEEEeccCCCCCCE-EEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCCCCE


Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC---------CC
Q 004214          341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL---------PD  411 (768)
Q Consensus       341 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~---------~~  411 (768)
                        ++..+..|.+..+.................... .....-+..+.+.+++..++..+..|.++...+         ..
T Consensus       655 --lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L-~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~k  731 (805)
T PRK05560        655 --ILLATKNGKAIRFPESDVRPMGRTARGVRGIKL-REGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGK  731 (805)
T ss_pred             --EEEEECCCcEEEEEhhhcCccCcccCCcccccC-CCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCC


Q ss_pred             CceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEE
Q 004214          412 LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSC  482 (768)
Q Consensus       412 ~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  482 (768)
                      +.....+......+..+........++..+.+|.+..++...   +.........|..+.+..++..+...
T Consensus       732 G~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~e---I~~~gR~a~GVk~I~L~~~D~V~~~~  799 (805)
T PRK05560        732 GVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSE---ISITGRNTQGVRLIRLDEGDKVVSVA  799 (805)
T ss_pred             cEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHH---CCccccCCCCeeeEecCCCCEEEEEE

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	768
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-41
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-21
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-25
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-22
2h9l_A	329	Wdr5delta23 Length = 329		1e-22
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-22
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-22
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-22
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-22
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-22
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-22
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-22
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-22
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-22
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-22
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-22
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-22
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-22
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-22
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-21
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-21
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		4e-21
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-12
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-20
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		7e-20
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-20
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		6e-11
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-08
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		8e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		8e-20
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		6e-11
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-08
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		8e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		5e-19
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-18
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-18
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-11
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-17
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		9e-17
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		5e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-16
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-16
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-04
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-16
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-04
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		9e-16
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-15
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-15
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-15
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-15
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		2e-15
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-15
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-15
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		5e-15
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		5e-15
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		7e-14
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-14
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-14
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		4e-13
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		5e-14
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-14
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-13
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		8e-14
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		1e-11
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		8e-05
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		3e-11
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		3e-11
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		6e-11
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		6e-11
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		6e-11
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		7e-11
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-10
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-10
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-10
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-08
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-08
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-08
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		2e-08
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		3e-08
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-08
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		4e-08
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		9e-08
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		1e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-07
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		2e-07
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-07
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		4e-07
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		4e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		5e-07
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		1e-06
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		1e-06
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		1e-06
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		1e-06
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		1e-06
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		1e-06
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		5e-06
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		3e-04
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		6e-05

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  168 bits (425), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 147/551 (26%), Positives = 242/551 (43%), Gaps = 76/551 (13%)
Query: 9   DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 68
           D+ V +W+ +G        GH   V  + F PD     + S SDD TV++W+   +  + 
Sbjct: 78  DKTVKLWNRNGQLL-QTLTGHSSSVRGVAFSPD--GQTIASASDDKTVKLWNRNGQ-LLQ 133
Query: 69  TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGS 128
           TL  H S V  +A + DG T+ SA  DK V LW+      +        V  V   P G 
Sbjct: 134 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG- 192
Query: 129 AFDSFLSSYNQQTIKKKRRSLEIHFITVGE----RGI-----------------VRMWNA 167
              +  S+ + +T+K   R+ ++     G     RG+                 V++WN 
Sbjct: 193 --QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 250
Query: 168 DSACLYE---QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPE 224
           +   L       SS   ++F               P  Q +   + D+      TV++  
Sbjct: 251 NGQLLQTLTGHSSSVNGVAFR--------------PDGQTIASASDDK------TVKLWN 290
Query: 225 KKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEI 284
           +  +L+  + L G++  +  + F   + Q +A A++ + V++++ +       L GHS  
Sbjct: 291 RNGQLL--QTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLWNRNGQHL-QTLTGHSSS 346
Query: 285 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 344
           V  +   A S     I + S D +V+LW+   +    + TGH  +V  VAFS   Q  + 
Sbjct: 347 VWGV---AFSPDGQTIASASDDKTVKLWNRNGQLLQTL-TGHSSSVRGVAFSPDGQT-IA 401
Query: 345 SGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTA 404
           S S D T+K+W+ +G           +    +  H   +  +A +P+D  + + S D+T 
Sbjct: 402 SASDDKTVKLWNRNG-----------QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV 450
Query: 405 CVW-RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH 463
            +W R   L+  +T  GH   +  V FSP  Q + +AS DKT+K+W+  +G  L+T  GH
Sbjct: 451 KLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH 507
Query: 464 TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFAT 523
           +SSV   +F   G  I S   D  VKLW  R G+ + T   H   +W +A     +  A+
Sbjct: 508 SSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 566
Query: 524 GGSDALVNLWH 534
             SD  V LW+
Sbjct: 567 ASSDKTVKLWN 577

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 5/168 (2%)
Query: 368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW-RLPDLVSVVTFRGHKRGIW 426
           M +K +  + AH   +  +A +P+   + + S D+T  +W R   L+  +T  GH   +W
Sbjct: 4   MGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--GHSSSVW 61
Query: 427 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 486
            V FSP  Q + +AS DKT+K+W+  +G  L+T  GH+SSV   +F   G  I S   D 
Sbjct: 62  GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 120
Query: 487 LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
            VKLW  R G+ + T   H   +W +A     +  A+   D  V LW+
Sbjct: 121 TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 21/244 (8%)
Query: 248 LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 307
           L  ++Q +        ++++D +++ C  +L GH+  VLCL        + +I+TGS D+
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL-----QYDERVIITGSSDS 193
Query: 308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 367
           +VR+WD  +   +     H  AV  + F+  +   +V+ S D +I VW       D   P
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM---MVTCSKDRSIAVW-------DMASP 243
Query: 368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 427
            ++  + V+  H   +N   V  +D  + + S DRT  VW       V T  GHKRGI  
Sbjct: 244 TDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 301
Query: 428 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL 487
           +++   D++V++ S D TI++W I  G+CL+  EGH   V    F  +  +IVS   DG 
Sbjct: 302 LQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK--RIVSGAYDGK 357
Query: 488 VKLW 491
           +K+W
Sbjct: 358 IKVW 361

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 121/237 (51%), Gaps = 24/237 (10%)
Query: 300 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 359
           IV+G +DN++++WD  +  C  + TGH G+V  + + +++   +++GSSD T++VW  + 
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV---IITGSSDSTVRVWDVN- 201
Query: 360 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR 419
            + +    +    +AV          L +  N+ ++ T S+DR+  VW +     +   R
Sbjct: 202 -TGEMLNTLIHHCEAV----------LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 250
Query: 420 ---GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476
              GH+  +  V+F   D+ +++ASGD+TIK+W+ S    ++T  GH   +  A    R 
Sbjct: 251 VLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRD 306
Query: 477 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
             +VS  +D  ++LW +  G C+   + HE+ +  +    K     +G  D  + +W
Sbjct: 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK--RIVSGAYDGKIKVW 361

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 29  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 88
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 89  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 148
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 149 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 34  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 93
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 94  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 153
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 36  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 95
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 96  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 155
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 156 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 18  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 8   NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 67
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 68  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 127
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 128 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 12  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 13  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 72
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 73  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 132
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 133 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 12  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 11  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 70
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 71  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 130
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 131 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 18  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 18  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
           N   K  +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V
Sbjct: 17  NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 76
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 77  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 136
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 137 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 86/165 (52%)
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSV 428
           N   K  +A H K ++S+  +PN   +   S D+   +W   D     T  GHK GI  V
Sbjct: 15  NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 488
            +S    ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           ++W V+TG+C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 84/159 (52%)
Query: 375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 434
            +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V +S   
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 435 QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 494
            ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V++W V+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 495 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           TG C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 84/159 (52%)
Query: 375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 434
            +A H K ++S+  +PN   + + S D+   +W   D     T  GHK GI  V +S   
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 435 QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 494
            ++++AS DKT+KIW +S G CLKT +GH++ V   +F  +   IVS   D  V++W V+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 495 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           TG C+ T   H D + A+   +   +  +   D L  +W
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score =  100 bits (248), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 27/258 (10%)
Query: 277 VLAGHSE-IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 335
           VL GH + ++ CL  C        IV+GS DN++++W + +  C+    GH G V +   
Sbjct: 113 VLKGHDDHVITCLQFCGNR-----IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS--- 164
Query: 336 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 395
           S+   N ++SGS+D T+KVW+ +              + +   +G       +  ++  V
Sbjct: 165 SQMRDNIIISGSTDRTLKVWNAE------------TGECIHTLYGHTSTVRCMHLHEKRV 212
Query: 396 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 455
            +GS+D T  VW +     +    GH   +  V++    + V++ + D  +K+W     +
Sbjct: 213 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETET 270
Query: 456 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVG 515
           CL T +GHT+ V    F   G  +VS   D  +++W V TG CI T   H+     + + 
Sbjct: 271 CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL- 327
Query: 516 KKTEMFATGGSDALVNLW 533
            K  +  +G +D+ V +W
Sbjct: 328 -KDNILVSGNADSTVKIW 344

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Query: 370 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVE 429
           LK+  V+  H   + +      + +V +GS D T  VW       + T  GH  G+WS +
Sbjct: 108 LKSPKVLKGHDDHVITCLQFCGNRIV-SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 166
Query: 430 FSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVK 489
               D ++I+ S D+T+K+W+   G C+ T  GHTS+V R   L    ++VS   D  ++
Sbjct: 167 MR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV-RCMHLHE-KRVVSGSRDATLR 222
Query: 490 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537
           +W + TG+C+     H   +    V        +G  D +V +W   T
Sbjct: 223 VWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPET 268

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 138/300 (46%), Gaps = 28/300 (9%)
Query: 251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 310
           E+ Y+    + + ++VYD  +      L+GH   V  L     + G IL V+GS D +VR
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL---KYAHGGIL-VSGSTDRTVR 186
Query: 311 LWDSESRCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIKVWSF---DGLSDDAEQ 366
           +WD +  CC  V  GH   V  +   + K   ++V+GS D+T+ VW       + D  E+
Sbjct: 187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246
Query: 367 ---PM-------NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV 416
              P+       N     V+  H   + +  V+ + ++V +GS D T  VW +  +  + 
Sbjct: 247 HDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLY 304
Query: 417 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV--LRASFLT 474
              GH   I+S  +    +  I+AS D TI+IW + +G  + T +GHT+ V  LR S   
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--- 361
Query: 475 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
               +VS  ADG ++ W         +Y  H   + A+     ++     GS+   N+++
Sbjct: 362 -DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGSENQFNIYN 418

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 136/300 (45%), Gaps = 28/300 (9%)
Query: 251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 310
           E+ Y+    + + ++VYD  +      L+GH   V  L     + G IL V+GS D +VR
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWAL---KYAHGGIL-VSGSTDRTVR 186
Query: 311 LWDSESRCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIKVWSF---DGLSDDAEQ 366
           +WD +  CC  V  GH   V  +   + K   ++V+GS D+T+ VW       + D  E+
Sbjct: 187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246
Query: 367 ---PM-------NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV 416
              P+       N     V+  H   + +  V+ + ++V +GS D T  VW +     + 
Sbjct: 247 HDYPLVFHTPEENPYFVGVLRGHXASVRT--VSGHGNIVVSGSYDNTLIVWDVAQXKCLY 304
Query: 417 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV--LRASFLT 474
              GH   I+S  +    +  I+AS D TI+IW + +G    T +GHT+ V  LR S   
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS--- 361
Query: 475 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
               +VS  ADG ++ W         +Y  H   + A+     ++     GS+   N+++
Sbjct: 362 -DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGSENQFNIYN 418

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 120/557 (21%), Positives = 218/557 (39%), Gaps = 108/557 (19%)
Query: 7    GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
            GAD+ + V+  + G      K H+  V    F   +D S + + S D  V++WD    K 
Sbjct: 634  GADKTLQVFKAETGEKLLDIKAHEDEVLCCAF--SSDDSYIATCSADKKVKIWDSATGKL 691
Query: 67   VATLDKHFSRVTSMAITSDGSTLI--SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 124
            V T D+H  +V     T+  + L+  +   D  + LWDL    C+ T+  +      C  
Sbjct: 692  VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRF 751
Query: 125  PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 184
             P    D  L+S                       G +R+W+  SA   E+KS +V    
Sbjct: 752  SPD---DELLAS-------------------CSADGTLRLWDVRSA--NERKSINV---- 783
Query: 185  EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILD 244
                 KR F ++                        E P + +E+I+             
Sbjct: 784  -----KRFFLSS------------------------EDPPEDVEVIVKC----------- 803
Query: 245  LKFLGEEEQYLAVATNIEQVQVYDL-SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 303
              +  + ++ +  A N  +V ++D+ +S   + +  GH   +     C  S    L V  
Sbjct: 804  CSWSADGDKIIVAAKN--KVLLFDIHTSGLLAEIHTGHHSTI---QYCDFSPYDHLAVIA 858
Query: 304  SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 363
                 V LW+ +SR  V    GH+  V  V FS    +FL + S D TI+VW    +  +
Sbjct: 859  LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL-TASDDQTIRVWETKKVCKN 917
Query: 364  AEQPM-------------------NLKAKAVVAAHGKDINSL--------AVAPNDSLVC 396
            +   +                   N++   ++A     I+ L         ++P+   V 
Sbjct: 918  SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVA 977
Query: 397  TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 456
             G +D    +  LP+     +  GHK+ +  ++F+   + +I++S D  I++W+   G  
Sbjct: 978  FGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY 1037
Query: 457  LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK 516
            +   + H  +V +   L + ++++S   DG VK+W V TG     +  H+  + + A+  
Sbjct: 1038 V-FLQAHQETV-KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS 1095
Query: 517  KTEMFATGGSDALVNLW 533
                F++  +D    +W
Sbjct: 1096 DATKFSSTSADKTAKIW 1112

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 128/341 (37%), Gaps = 30/341 (8%)
Query: 248 LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 307
             ++ Q +A     + +QV+   +      +  H + VLC   CA SS    I T S D 
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLC---CAFSSDDSYIATCSADK 679
Query: 308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV-SGSSDHTIKVWSFDGLSDDAEQ 366
            V++WDS +   V     H   V    F+ K  + L+ +GS+D  +K+W  +        
Sbjct: 680 KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-------- 731
Query: 367 PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIW 426
               + +  +  H   +N    +P+D L+ + S D T  +W +       +    KR   
Sbjct: 732 --QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV-KRFFL 788
Query: 427 SVEFSPVDQVVI------TASGDKTI-------KIWSI-SDGSCLKTFEGHTSSVLRASF 472
           S E  P D  VI      +A GDK I        ++ I + G   +   GH S++    F
Sbjct: 789 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDF 848
Query: 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL 532
                  V   +   V+LW + +   +A    H   +  +        F T   D  + +
Sbjct: 849 SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 908
Query: 533 WHDSTXXXXXXXXXXXXXXVLRGQELENAVLDADYTKAIQV 573
           W                  V+  QE E  VL  D  + +Q+
Sbjct: 909 WETKKVCKNSAIVLKQEIDVVF-QENETMVLAVDNIRGLQL 948

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 69/164 (42%), Gaps = 2/164 (1%)
Query: 372 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFS 431
           ++ VV  H   +     + +   + +   D+T  V++      ++  + H+  +    FS
Sbjct: 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS 666
Query: 432 PVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV--SCGADGLVK 489
             D  + T S DK +KIW  + G  + T++ H+  V    F  +   ++  +   D  +K
Sbjct: 667 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726
Query: 490 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           LW +   EC  T   H + +         E+ A+  +D  + LW
Sbjct: 727 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 463 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFA 522
           HT +V  A F   G +I SCGAD  ++++   TGE +     HED++   A        A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 523 TGGSDALVNLWHDST 537
           T  +D  V +W  +T
Sbjct: 674 TCSADKKVKIWDSAT 688

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 95.9 bits (237), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 120/557 (21%), Positives = 218/557 (39%), Gaps = 108/557 (19%)
Query: 7    GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
            GAD+ + V+  + G      K H+  V    F   +D S + + S D  V++WD    K 
Sbjct: 641  GADKTLQVFKAETGEKLLDIKAHEDEVLCCAF--SSDDSYIATCSADKKVKIWDSATGKL 698
Query: 67   VATLDKHFSRVTSMAITSDGSTLI--SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 124
            V T D+H  +V     T+  + L+  +   D  + LWDL    C+ T+  +      C  
Sbjct: 699  VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRF 758
Query: 125  PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 184
             P    D  L+S                       G +R+W+  SA   E+KS +V    
Sbjct: 759  SPD---DELLAS-------------------CSADGTLRLWDVRSA--NERKSINV---- 790
Query: 185  EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILD 244
                 KR F ++                        E P + +E+I+             
Sbjct: 791  -----KRFFLSS------------------------EDPPEDVEVIVKC----------- 810
Query: 245  LKFLGEEEQYLAVATNIEQVQVYDL-SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 303
              +  + ++ +  A N  +V ++D+ +S   + +  GH   +     C  S    L V  
Sbjct: 811  CSWSADGDKIIVAAKN--KVLLFDIHTSGLLAEIHTGHHSTI---QYCDFSPYDHLAVIA 865
Query: 304  SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 363
                 V LW+ +SR  V    GH+  V  V FS    +FL + S D TI+VW    +  +
Sbjct: 866  LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL-TASDDQTIRVWETKKVCKN 924
Query: 364  AEQPM-------------------NLKAKAVVAAHGKDINSL--------AVAPNDSLVC 396
            +   +                   N++   ++A     I+ L         ++P+   V 
Sbjct: 925  SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVA 984
Query: 397  TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 456
             G +D    +  LP+     +  GHK+ +  ++F+   + +I++S D  I++W+   G  
Sbjct: 985  FGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY 1044
Query: 457  LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK 516
            +   + H  +V +   L + ++++S   DG VK+W V TG     +  H+  + + A+  
Sbjct: 1045 V-FLQAHQETV-KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS 1102
Query: 517  KTEMFATGGSDALVNLW 533
                F++  +D    +W
Sbjct: 1103 DATKFSSTSADKTAKIW 1119

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 128/341 (37%), Gaps = 30/341 (8%)
Query: 248 LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 307
             ++ Q +A     + +QV+   +      +  H + VLC   CA SS    I T S D 
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLC---CAFSSDDSYIATCSADK 686
Query: 308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV-SGSSDHTIKVWSFDGLSDDAEQ 366
            V++WDS +   V     H   V    F+ K  + L+ +GS+D  +K+W  +        
Sbjct: 687 KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-------- 738
Query: 367 PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIW 426
               + +  +  H   +N    +P+D L+ + S D T  +W +       +    KR   
Sbjct: 739 --QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV-KRFFL 795
Query: 427 SVEFSPVDQVVI------TASGDKTI-------KIWSI-SDGSCLKTFEGHTSSVLRASF 472
           S E  P D  VI      +A GDK I        ++ I + G   +   GH S++    F
Sbjct: 796 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDF 855
Query: 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL 532
                  V   +   V+LW + +   +A    H   +  +        F T   D  + +
Sbjct: 856 SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 915
Query: 533 WHDSTXXXXXXXXXXXXXXVLRGQELENAVLDADYTKAIQV 573
           W                  V+  QE E  VL  D  + +Q+
Sbjct: 916 WETKKVCKNSAIVLKQEIDVVF-QENETMVLAVDNIRGLQL 955

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 69/164 (42%), Gaps = 2/164 (1%)
Query: 372 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFS 431
           ++ VV  H   +     + +   + +   D+T  V++      ++  + H+  +    FS
Sbjct: 614 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS 673
Query: 432 PVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV--SCGADGLVK 489
             D  + T S DK +KIW  + G  + T++ H+  V    F  +   ++  +   D  +K
Sbjct: 674 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 733
Query: 490 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           LW +   EC  T   H + +         E+ A+  +D  + LW
Sbjct: 734 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 463 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFA 522
           HT +V  A F   G +I SCGAD  ++++   TGE +     HED++   A        A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 523 TGGSDALVNLWHDST 537
           T  +D  V +W  +T
Sbjct: 681 TCSADKKVKIWDSAT 695

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 34/299 (11%)
Query: 255 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 314
           +  A+    ++V+D  +      L GH++ V   D     SGK+L  + S D +++LWD 
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQ--DISFDHSGKLL-ASCSADMTIKLWDF 179
Query: 315 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 374
           +   C+    GH   V +V+      + +VS S D TIK+W       + +    +K   
Sbjct: 180 QGFECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMW-------EVQTGYCVK--- 228
Query: 375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 434
               H + +  +    + +L+ + S D+T  VW +         R H+  +  + ++P  
Sbjct: 229 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 288
Query: 435 Q--------------------VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT 474
                                 +++ S DKTIK+W +S G CL T  GH + V    F +
Sbjct: 289 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 348
Query: 475 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
            G  I+SC  D  +++W  +   C+ T + HE  + +L   K      TG  D  V +W
Sbjct: 349 GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 96/234 (41%), Gaps = 31/234 (13%)
Query: 324 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 383
           +GH   V  V F     + +VS S D TIKVW ++  + D E+ +          H   +
Sbjct: 105 SGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYE--TGDFERTLK--------GHTDSV 153
Query: 384 NSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 443
             ++   +  L+ + S D T  +W       + T  GH   + SV   P    +++AS D
Sbjct: 154 QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 213
Query: 444 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 503
           KTIK+W +  G C+KTF GH   V        G  I SC  D  V++W V T EC A   
Sbjct: 214 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 273
Query: 504 KHEDKI----WAL----------------AVGKKTEMFATGGSDALVNLWHDST 537
           +H   +    WA                   GK      +G  D  + +W  ST
Sbjct: 274 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 86.7 bits (213), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 120/271 (44%), Gaps = 43/271 (15%)
Query: 291 CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH 350
           C    GK L  TG++D  +R+WD E+R  V +  GH   + ++ +     + LVSGS D 
Sbjct: 130 CFSPDGKFL-ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS-GDKLVSGSGDR 187
Query: 351 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVW-- 407
           T+++W            +     ++  +    + ++AV+P D   +  GS DR   VW  
Sbjct: 188 TVRIWD-----------LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236
Query: 408 -------RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD------- 453
                  RL       T  GHK  ++SV F+   Q V++ S D+++K+W++ +       
Sbjct: 237 ETGFLVERLDSENESGT--GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 294
Query: 454 -----GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 508
                G+C  T+ GH   VL  +       I+S   D  V  W  ++G  +     H + 
Sbjct: 295 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 354
Query: 509 IWALAV------GKKTEMFATGGSDALVNLW 533
           + ++AV      G +  +FATG  D    +W
Sbjct: 355 VISVAVANGSSLGPEYNVFATGSGDCKARIW 385

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 14/221 (6%)
Query: 297 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356
           K  I+ GS D  +R+++  +   V     H   + ++A     + +++SGS D T+K+W+
Sbjct: 67  KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWN 125
Query: 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSV 415
           ++          N   +     H   +  +A  P D S   +G  DRT  VW L      
Sbjct: 126 WEN---------NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 416 VTFR-GHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472
            T   G +RG+  V++ P+     +ITAS D TIKIW     SC+ T EGH S+V  A F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 513
                 I+S   DG +K+W   T +   T +   ++ W +A
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 52/118 (44%)
Query: 417 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476
           TF      +  ++F P +  V+T      ++IW+      +++ +   + V    F+ R 
Sbjct: 8   TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 477 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
             I+    D  ++++   TGE +  ++ H D I ++AV        +G  D  V LW+
Sbjct: 68  NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 14/221 (6%)
Query: 297 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356
           K  I+ GS D  +R+++  +   V     H   + ++A     + +++SGS D T+K+W+
Sbjct: 67  KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-HPTKPYVLSGSDDLTVKLWN 125
Query: 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSV 415
           ++          N   +     H   +  +A  P D S   +G  DRT  VW L      
Sbjct: 126 WEN---------NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 416 VTFR-GHKRGIWSVEFSPVD--QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472
            T   G +RG+  V++ P+     +ITAS D TIKIW     SC+ T EGH S+V  A F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 513
                 I+S   DG +K+W   T +   T +   ++ W +A
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/118 (21%), Positives = 52/118 (44%)
Query: 417 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476
           TF      +  ++F P +  V+T      +++W+      +++ +   + V    F+ R 
Sbjct: 8   TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 477 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
             I+    D  ++++   TGE +  ++ H D I ++AV        +G  D  V LW+
Sbjct: 68  NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 14/221 (6%)
Query: 297 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356
           K  I+ GS D  +R+++  +   V     H   + ++A     + +++SGS D T+K+W+
Sbjct: 67  KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-HPTKPYVLSGSDDLTVKLWN 125
Query: 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSV 415
           ++          N   +     H   +  +A  P D S   +G  DRT  VW L      
Sbjct: 126 WEN---------NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 416 VTFR-GHKRGIWSVEFSPVD--QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472
            T   G +RG+  V++ P+     +ITAS D TIKIW     SC+ T EGH S+V  A F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 513
                 I+S   DG +K+W   T +   T +   ++ W +A
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/118 (21%), Positives = 52/118 (44%)
Query: 417 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476
           TF      +  ++F P +  V+T      +++W+      +++ +   + V    F+ R 
Sbjct: 8   TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 477 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
             I+    D  ++++   TGE +  ++ H D I ++AV        +G  D  V LW+
Sbjct: 68  NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 14/221 (6%)
Query: 297 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356
           K  I+ GS D  +R+++  +   V     H   + ++A     + +++SGS D T+K+W+
Sbjct: 67  KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-HPTKPYVLSGSDDLTVKLWN 125
Query: 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSV 415
           ++          N   +     H   +  +A  P D S   +G  DRT  VW L      
Sbjct: 126 WEN---------NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 416 VTFR-GHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472
            T   G +RG+  V++ P+     +ITAS D TIKIW     SC+ T EGH S+V  A F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 513
                 I+S   DG +K+W   T +   T +   ++ W +A
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/118 (21%), Positives = 52/118 (44%)
Query: 417 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476
           TF      +  ++F P +  V+T      +++W+      +++ +   + V    F+ R 
Sbjct: 8   TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 477 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
             I+    D  ++++   TGE +  ++ H D I ++AV        +G  D  V LW+
Sbjct: 68  NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 82.4 bits (202), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380
           G   GH G V ++A S    N L+S S D T+  W   G  DD +  + +++      H 
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 65
Query: 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440
             +    +  + +   + S D+T  +W +    +   F GHK  + SV+      ++I+ 
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 441 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 494
           S DKTIK+W+I  G CL T  GH   V +   +           I+S G D +VK W + 
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 495 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
             +  A +  H   I  L       + A+ G D  + LW+
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380
           G   GH G V ++A S    N L+S S D T+  W   G  DD +  + +++      H 
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 65
Query: 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440
             +    +  + +   + S D+T  +W +    +   F GHK  + SV+      ++I+ 
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 441 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 494
           S DKTIK+W+I  G CL T  GH   V +   +           I+S G D +VK W + 
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 495 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
             +  A +  H   I  L       + A+ G D  + LW+
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380
           G   GH G V ++A S    N L+S S D T+  W   G  DD +  + +++      H 
Sbjct: 5   GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 59
Query: 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440
             +    +  + +   + S D+T  +W +    +   F GHK  + SV+      ++I+ 
Sbjct: 60  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 119
Query: 441 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 494
           S DKTIK+W+I  G CL T  GH   V +   +           I+S G D +VK W + 
Sbjct: 120 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 495 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
             +  A +  H   I  L       + A+ G D  + LW+
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380
           G   GH G V ++A S    N L+S S D T+  W   G  DD +  + +++      H 
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 65
Query: 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440
             +    +  + +   + S D+T  +W +    +   F GHK  + SV+      ++I+ 
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 441 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 494
           S DKTIK+W+I  G CL T  GH   V +   +           I+S G D +VK W + 
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 495 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
             +  A +  H   I  L       + A+ G D  + LW+
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380
           G   GH G V ++A S    N L+S S D T+  W   G  DD +  + +++      H 
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 65
Query: 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440
             +    +  + +   + S D+T  +W +    +   F GHK  + SV+      ++I+ 
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 441 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 494
           S DKTIK+W+I  G CL T  GH   V +   +           I+S G D +VK W + 
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 495 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
             +  A +  H   I  L       + A+ G D  + LW+
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 20/233 (8%)
Query: 304 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 363
           S+D +VRLW  + +    V     G + +V +  + +  L+ G  D  I        +  
Sbjct: 36  SRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSE-KELLLFGGKDTXIN--GVPLFATS 92
Query: 364 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR 423
            E P+       +  H  ++ SL+    D +V +GS D+TA VW+   LV     + H  
Sbjct: 93  GEDPL-----YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLV--YNLQAHNA 143
Query: 424 GIWS---VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 480
            +W    V FS  +   +TAS DKTIK+W   +   +KTF G  + V+R   +      +
Sbjct: 144 SVWDAKVVSFS--ENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFI 199
Query: 481 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           SC  DGL+KL    TG+ + TY+ HE  ++ + +    ++ +  G D  V +W
Sbjct: 200 SCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSC-GEDRTVRIW 251

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 10/217 (4%)
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380
           G   GH G V  +A + +  + ++S S D TI +W    L+ D E    +  +A+   H 
Sbjct: 32  GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWK---LTRD-ETNYGIPQRAL-RGHS 86
Query: 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440
             ++ + ++ +     +GS D T  +W L    +   F GH + + SV FS  ++ +++ 
Sbjct: 87  HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 146
Query: 441 SGDKTIKIWSISDGSCLKTF--EGHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVRTG 496
           S DKTIK+W+ + G C  T   E H+   S +R S  +    IVSCG D LVK+W +   
Sbjct: 147 SRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 205
Query: 497 ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           +    +  H   +  + V     + A+GG D    LW
Sbjct: 206 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 10/217 (4%)
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380
           G   GH G V  +A + +  + ++S S D TI +W    L+ D E    +  +A+   H 
Sbjct: 9   GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWK---LTRD-ETNYGIPQRAL-RGHS 63
Query: 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440
             ++ + ++ +     +GS D T  +W L    +   F GH + + SV FS  ++ +++ 
Sbjct: 64  HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 123
Query: 441 SGDKTIKIWSISDGSCLKTF--EGHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVRTG 496
           S DKTIK+W+ + G C  T   E H+   S +R S  +    IVSCG D LVK+W +   
Sbjct: 124 SRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 182
Query: 497 ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           +    +  H   +  + V     + A+GG D    LW
Sbjct: 183 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 94/220 (42%), Gaps = 12/220 (5%)
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380
           G   GH G V ++A S    N L+S S D T+  W   G  DD +  + +++      H 
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG--DDQKFGVPVRS---FKGHS 65
Query: 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440
             +    +  + +   + S D+T  +W +    +   F GHK  + SV+       +I+ 
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISG 125
Query: 441 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR------GAQIVSCGADGLVKLWTVR 494
           S DKTIK+W+I  G CL T  GH   V +   +           I+S G D  VK W + 
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLN 184
Query: 495 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
             +  A +  H   I  L       + A+ G D  + LW+
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 80.1 bits (196), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 103/235 (43%), Gaps = 23/235 (9%)
Query: 278 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-----SRCCVGVG----TGHMG 328
           L GH   V  L           +V+ S+D ++  W        S C  G+      GH  
Sbjct: 9   LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 329 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 388
            V  VA S    NF VS S DH++++W+            N + +     H KD+ S+A 
Sbjct: 69  FVSDVALSNN-GNFAVSASWDHSLRLWNL----------QNGQCQYKFLGHTKDVLSVAF 117
Query: 389 APNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSP-VDQVVITASG-DKT 445
           +P++  + +G +D    VW +         RG H   +  V FSP +D  VI + G D  
Sbjct: 118 SPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 446 IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 500
           +K+W ++ G  +   +GHT+ V   +    G+   S   DG+ +LW +  GE ++
Sbjct: 178 VKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALS 232

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 8/216 (3%)
Query: 324 TGHMGAVGAVAFSKKLQNF--LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 381
           TGH G V ++A  +  +    +VS S D T+  W  +     +E    L  + +   H  
Sbjct: 10  TGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRL-EGHSA 68
Query: 382 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 441
            ++ +A++ N +   + S D +  +W L +      F GH + + SV FSP ++ +++  
Sbjct: 69  FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG 128
Query: 442 GDKTIKIWSISDGSCLKTFE--GHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 497
            D  +++W++  G C+ T     HT   S +R S       IVS G D LVK+W + TG 
Sbjct: 129 RDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGR 187
Query: 498 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
            +     H + + ++ V     + A+   D +  LW
Sbjct: 188 LVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 123/263 (46%), Gaps = 16/263 (6%)
Query: 272 MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGHMGAV 330
           +   + L GH   V+ +D   +S    +  + S D  +RLWD E+ +    +  G + A 
Sbjct: 70  LDLQWSLEGHQLGVVSVD---ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW 126
Query: 331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 390
             +AFS   Q +L +G+  H  KV  F   S   E  ++ +        GK I S+A +P
Sbjct: 127 -TLAFSPDSQ-YLATGT--HVGKVNIFGVESGKKEYSLDTR--------GKFILSIAYSP 174
Query: 391 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 450
           +   + +G+ D    ++ +     + T  GH   I S+ FSP  Q+++TAS D  IKI+ 
Sbjct: 175 DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 234
Query: 451 ISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIW 510
           +   +   T  GH S VL  +F       VS  +D  VK+W V T  C+ T+  H+D++W
Sbjct: 235 VQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVW 294
Query: 511 ALAVGKKTEMFATGGSDALVNLW 533
            +          + G D  ++++
Sbjct: 295 GVKYNGNGSKIVSVGDDQEIHIY 317

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 107/276 (38%), Gaps = 43/276 (15%)
Query: 253 QYLAVATNIEQVQVY--DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 310
            YLA A+      ++  +     C   L GH   V    + A +    L+ T S+D SV 
Sbjct: 74  NYLASASFDATTCIWKKNQDDFECVTTLEGHENEV---KSVAWAPSGNLLATCSRDKSVW 130
Query: 311 LW--DSESRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 367
           +W  D E    CV V   H   V  V +    Q  L S S D T+K++         E+ 
Sbjct: 131 VWEVDEEDEYECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYR--------EEE 181
Query: 368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL---------------PDL 412
            +    A +  H   + SLA  P+   + + S DRT  +WR                P  
Sbjct: 182 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241
Query: 413 VSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK--TF-------EG 462
             + T  G H R I+ + +  +   + TA GD  I+++     S  +  TF       + 
Sbjct: 242 KCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQA 301
Query: 463 HTSSVLRASFLTRGAQIV-SCGADGLVKLWTVRTGE 497
           H+  V   ++  +   ++ SC  DG V  W  +  E
Sbjct: 302 HSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 16/200 (8%)
Query: 342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQ 400
            L S   D  I++W  +G S           K+V++  H + +  +A +P  + + + S 
Sbjct: 30  LLASCGGDRRIRIWGTEGDS--------WICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 401 DRTACVWR--LPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG---S 455
           D T C+W+    D   V T  GH+  + SV ++P   ++ T S DK++ +W + +     
Sbjct: 82  DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 456 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE--CIATYDKHEDKIWALA 513
           C+     HT  V    +      + S   D  VKL+     +  C AT + HE  +W+LA
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 514 VGKKTEMFATGGSDALVNLW 533
                +  A+   D  V +W
Sbjct: 202 FDPSGQRLASCSDDRTVRIW 221

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 425 IWSVEFSPVDQVVITASGDKTIKIWSISDGS--CLKTF-EGHTSSVLRASFLTRGAQIVS 481
            W + ++P   ++ +  GD+ I+IW     S  C     EGH  +V + ++   G  + S
Sbjct: 19  CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLAS 78
Query: 482 CGADGLVKLWTVRTG--ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
              D    +W       EC+ T + HE+++ ++A      + AT   D  V +W
Sbjct: 79  ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 23/231 (9%)
Query: 321 GVGTGHMGAVGAV--AFSKKLQN---FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 375
           G+  GH   V ++   FS+K       L+SGS D T+ +W      ++      +  KA+
Sbjct: 15  GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKL--YEEEQNGYFGIPHKAL 72
Query: 376 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ 435
              H   ++ LA++  +    + S D+T  +W L    +   F GH+  ++SV FSP ++
Sbjct: 73  TG-HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 436 VVITASGDKTIKIWSISDGSCLKTF---EGHTS--SVLRASFLTRGAQIV--------SC 482
            +++A  ++ IK+W+I  G C  +    E H+   S +R S + + A  V        S 
Sbjct: 132 QILSAGAEREIKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV 190
Query: 483 GADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           G DG +K+W     +   T+  HE  +  L++    +  ATGG D  + +W
Sbjct: 191 GWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 23/230 (10%)
Query: 278 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD-SESRCCVGVG----TGHMGAVGA 332
           +  H+++V  + T   ++   +IV+ S+D S+ LW  ++     GV     TGH   V  
Sbjct: 378 MRAHTDMVTAIATPIDNAD--IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVED 435
Query: 333 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 392
           V  S   Q F +SGS D  +++W              +  +  V  H KD+ S+A + ++
Sbjct: 436 VVLSSDGQ-FALSGSWDGELRLWDL---------AAGVSTRRFVG-HTKDVLSVAFSLDN 484
Query: 393 SLVCTGSQDRTACVWR-LPDLVSVVT--FRGHKRGIWSVEFSP--VDQVVITASGDKTIK 447
             + + S+DRT  +W  L +    ++    GH+  +  V FSP  +   +++AS DKT+K
Sbjct: 485 RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544
Query: 448 IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 497
           +W++S+     T  GHT  V   +    G+   S G DG+V LW +  G+
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 12/219 (5%)
Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 380
           G    H   V A+A      + +VS S D +I +W      DD    +   A+  +  H 
Sbjct: 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKL--TKDDKAYGV---AQRRLTGHS 430
Query: 381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 440
             +  + ++ +     +GS D    +W L   VS   F GH + + SV FS  ++ +++A
Sbjct: 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA 490
Query: 441 SGDKTIKIWSISDGSCLKTF----EGHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVR 494
           S D+TIK+W+ + G C  T     EGH    S +R S  T    IVS   D  VK+W + 
Sbjct: 491 SRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 495 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
             +  +T   H   +  +AV     + A+GG D +V LW
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 75.9 bits (185), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 115/276 (41%), Gaps = 12/276 (4%)
Query: 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG 321
           E+V+      M     L GH   VLC+D C     K  IV+ S+D  V +WDS +     
Sbjct: 44  ERVEALGQFVMKTRRTLKGHGNKVLCMDWC---KDKRRIVSSSQDGKVIVWDSFTTNKEH 100
Query: 322 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 381
             T     V A A++      +  G  D+   V+    L+ D  + M  K K+V A H  
Sbjct: 101 AVTMPCTWVMACAYAPS-GCAIACGGLDNKCSVYP---LTFDKNENMAAKKKSV-AMHTN 155
Query: 382 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD--QVVIT 439
            +++ +   +D  + T S D T  +W +     + +F GH   +  ++ +P +     ++
Sbjct: 156 YLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215
Query: 440 ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 499
              DK   +W +  G C++ FE H S V    +   G    S   D   +L+ +R    +
Sbjct: 216 GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275
Query: 500 ATYDKHEDKIWALAV--GKKTEMFATGGSDALVNLW 533
           A Y K      A +V       +   G +D  +N+W
Sbjct: 276 AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW 311

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 112/264 (42%), Gaps = 40/264 (15%)
Query: 299 LIVTGSKDNSVRLWDSESRC-------CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT 351
           L+  GS D++V +W  E           + +  GH   V  VA+S     +L + S D +
Sbjct: 72  LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND-GYYLATCSRDKS 130
Query: 352 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL-- 409
           + +W  D      E     +  +V+  H +D+  +   P+++L+ + S D T  +W+   
Sbjct: 131 VWIWETD------ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD 184
Query: 410 PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG--DKTIKIWSI--------SDGSCLKT 459
            D   V    GH+  +WS +F   + V    SG  D T+++W           +  C   
Sbjct: 185 DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAI 244
Query: 460 F-EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE---------CIATYDKHEDKI 509
             + H   V   ++   G  I S GADG++ ++    GE         C   Y+ +  K 
Sbjct: 245 LPDVHKRQVYNVAWGFNGL-IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKW 303
Query: 510 WALAVGKKTEMFATGGSDALVNLW 533
             L +  KT + ATGG D +VN W
Sbjct: 304 --LELNGKT-ILATGGDDGIVNFW 324

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 15/157 (9%)
Query: 394 LVCTGSQDR----TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIW 449
           ++ TGS DR     +  +    L+ V+    HK+ I SV + P   ++   S D T+ IW
Sbjct: 26  ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85
Query: 450 SISDGS-------CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW-TVRTGE---C 498
           +  + +        L   EGH + V   ++   G  + +C  D  V +W T  +GE   C
Sbjct: 86  AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYEC 145
Query: 499 IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 535
           I+   +H   +  +       + A+   D  V +W D
Sbjct: 146 ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD 182

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 419 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 478
           + H   I  ++F P  + +I++S D  +KIWS+ DGS  +T  GH ++V   + + RG  
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 479 IVSCGADGLVKLWTVRTGECIATYDKHED 507
           ++S   DG ++LW   TG  I T+++ E+
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKEN 221

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 419 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 478
           + H   I  ++F P  + +I++S D  +KIWS+ DGS  +T  GH ++V   + + RG  
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 479 IVSCGADGLVKLWTVRTGECIATYDKHED 507
           ++S   DG ++LW   TG  I T+++ E+
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKEN 224

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 27/231 (11%)
Query: 318 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 377
           CC  +  GH G V ++ ++ + +N++VS S D  + VW  + L+      + L    V+ 
Sbjct: 58  CCRTL-QGHSGKVYSLDWTPE-KNWIVSASQDGRLIVW--NALTSQKTHAIKLHCPWVME 113
Query: 378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP-------DLVSVVTFRGHKRGIWSVEF 430
                    A APN   V  G  D    ++ L        ++       GHK    S ++
Sbjct: 114 C--------AFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQY 165
Query: 431 SPVDQV-VITASGDKTIKIWSISDGSCLKTF-----EGHTSSVLRASFLTRGAQI-VSCG 483
            P  +  +IT SGD+T  +W ++ G  +  F      GHT+ VL  S  +  A + +S  
Sbjct: 166 VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225
Query: 484 ADGLVKLWTVR-TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
            D  V+LW +R T   + TY  HE  I ++      + F TG  D    L+
Sbjct: 226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF 276

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 22/331 (6%)
Query: 210 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 269
           AD  L   T    P  ++++   + L G+  +I  + + G + + L  A+   ++ ++D 
Sbjct: 26  ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDS 84
Query: 270 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVG---TG 325
            + +  + +   S  V+   TCA +     +  G  DN   +++ ++R   V V     G
Sbjct: 85  YTTNKVHAIPLRSSWVM---TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 326 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385
           H G +    F     N +V+ S D T  +W  +            +       H  D+ S
Sbjct: 142 HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIE----------TGQQTTTFTGHTGDVMS 189
Query: 386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 445
           L++AP+  L  +G+ D +A +W + + +   TF GH+  I ++ F P      T S D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 446 IKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 503
            +++ +     L T+  +     +   SF   G  +++   D    +W     +      
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 504 KHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
            H++++  L V       ATG  D+ + +W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 22/331 (6%)
Query: 210 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 269
           AD  L   T    P  ++++   + L G+  +I  + + G + + L  A+   ++ ++D 
Sbjct: 26  ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDS 84
Query: 270 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVG---TG 325
            + +  + +   S  V+   TCA +     +  G  DN   +++ ++R   V V     G
Sbjct: 85  YTTNKVHAIPLRSSWVM---TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 326 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385
           H G +    F     N +V+ S D T  +W  +            +       H  D+ S
Sbjct: 142 HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIE----------TGQQTTTFTGHTGDVMS 189
Query: 386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 445
           L++AP+  L  +G+ D +A +W + + +   TF GH+  I ++ F P      T S D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 446 IKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 503
            +++ +     L T+  +     +   SF   G  +++   D    +W     +      
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 504 KHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
            H++++  L V       ATG  D+ + +W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 22/331 (6%)
Query: 210 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 269
           AD  L   T    P  ++++   + L G+  +I  + + G + + L  A+   ++ ++D 
Sbjct: 37  ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDS 95
Query: 270 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVG---TG 325
            + +  + +   S  V+   TCA +     +  G  DN   +++ ++R   V V     G
Sbjct: 96  YTTNKVHAIPLRSSWVM---TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 152
Query: 326 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385
           H G +    F     N +V+ S D T  +W  +            +       H  D+ S
Sbjct: 153 HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIE----------TGQQTTTFTGHTGDVMS 200
Query: 386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 445
           L++AP+  L  +G+ D +A +W + + +   TF GH+  I ++ F P      T S D T
Sbjct: 201 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 260
Query: 446 IKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 503
            +++ +     L T+  +     +   SF   G  +++   D    +W     +      
Sbjct: 261 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 320
Query: 504 KHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
            H++++  L V       ATG  D+ + +W+
Sbjct: 321 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 22/331 (6%)
Query: 210 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 269
           AD  L   T    P  ++++   + L G+  +I  + + G + + L  A+   ++ ++D 
Sbjct: 26  ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLLSASQDGKLIIWDS 84
Query: 270 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVG---TG 325
            + +  + +   S  V+   TCA +     +  G  DN   +++ ++R   V V     G
Sbjct: 85  YTTNKVHAIPLRSSWVM---TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 326 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385
           H G +    F     N +V+ S D T  +W  +            +       H  D+ S
Sbjct: 142 HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIE----------TGQQTTTFTGHTGDVMS 189
Query: 386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 445
           L++AP+  L  +G+ D +A +W + + +   TF GH+  I ++ F P      T S D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 446 IKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 503
            +++ +     L T+  +     +   SF   G  +++   D    +W     +      
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 504 KHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
            H++++  L V       ATG  D+ + +W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 22/331 (6%)
Query: 210 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 269
           AD  L   T    P  ++++   + L G+  +I  + + G + + L  A+   ++ ++D 
Sbjct: 26  ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLLSASQDGKLIIWDS 84
Query: 270 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVG---TG 325
            + +  + +   S  V+   TCA +     +  G  DN   +++ ++R   V V     G
Sbjct: 85  YTTNKVHAIPLRSSWVM---TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 326 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385
           H G +    F     N +V+ S D T  +W  +            +       H  D+ S
Sbjct: 142 HTGYLSCCRFLD--DNQIVTSSGDTTCALWDIE----------TGQQTTTFTGHTGDVMS 189
Query: 386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 445
           L++AP+  L  +G+ D +A +W + + +   TF GH+  I ++ F P      T S D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 446 IKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 503
            +++ +     L T+  +     +   SF   G  +++   D    +W     +      
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 504 KHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
            H++++  L V       ATG  D+ + +W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 116/241 (48%), Gaps = 13/241 (5%)
Query: 300 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 359
           IVTG ++  +RLW+ ++   + V   H   + +V ++K     ++S   ++   +W+   
Sbjct: 123 IVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKD-GTHIISMDVENVTILWNV-- 178
Query: 360 LSDDAEQPMNLK---AKAVVAAHGKDINSLAV----APNDSLVCTGSQDRTACVWRLPDL 412
           +S    Q   LK     ++ A +     SL V      +D  V  G +     V+++ + 
Sbjct: 179 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKG-AIFVYQITEK 237
Query: 413 VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472
                  GH   I  +EF+  ++++++AS D T++IW   +G+    F GH+ S++ AS+
Sbjct: 238 TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW 297
Query: 473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL 532
           +    +++SC  DG V+LW+++    +A        I+A  + +  + +A    D  VN+
Sbjct: 298 VGD-DKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV 356
Query: 533 W 533
           +
Sbjct: 357 Y 357

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 61/230 (26%)
Query: 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 356
           GH      ++++  L  +L+S S DHTI +W                             
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 238
Query: 357 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 400
                   F  ++DD +            K    V AH  ++N L+  P ++ ++ TGS 
Sbjct: 239 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 298
Query: 401 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 452
           D+T  +W L +L + + +F  HK  I+ V++SP ++ ++ +SG D+ + +W +S      
Sbjct: 299 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358
Query: 453 ------DGS--CLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTV 493
                 DG    L    GHT+ +   S+      I+ S   D ++++W +
Sbjct: 359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 61/230 (26%)
Query: 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 356
           GH      ++++  L  +L+S S DHTI +W                             
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 240
Query: 357 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 400
                   F  ++DD +            K    V AH  ++N L+  P ++ ++ TGS 
Sbjct: 241 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 300
Query: 401 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 452
           D+T  +W L +L + + +F  HK  I+ V++SP ++ ++ +SG D+ + +W +S      
Sbjct: 301 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 360
Query: 453 ------DGS--CLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTV 493
                 DG    L    GHT+ +   S+      I+ S   D ++++W +
Sbjct: 361 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 61/230 (26%)
Query: 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 356
           GH      ++++  L  +L+S S DHTI +W                             
Sbjct: 183 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 242
Query: 357 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 400
                   F  ++DD +            K    V AH  ++N L+  P ++ ++ TGS 
Sbjct: 243 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 302
Query: 401 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 452
           D+T  +W L +L + + +F  HK  I+ V++SP ++ ++ +SG D+ + +W +S      
Sbjct: 303 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 362
Query: 453 ------DGS--CLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTV 493
                 DG    L    GHT+ +   S+      I+ S   D ++++W +
Sbjct: 363 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 12/148 (8%)
Query: 371 KAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPD--LV-----SVVTFRGHK 422
           K   +V  H   +  +A  P ND+++ +GS+D T  VW +PD  LV      V+T  GH 
Sbjct: 72  KNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131
Query: 423 RGIWSVEFSPVDQ-VVITASGDKTIKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQI 479
           + +  V + P  Q V+++A  D  I +W +  G+ + T   + H  ++    +   GA I
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191
Query: 480 VSCGADGLVKLWTVRTGECIATYDK-HE 506
            +   D  V++   R G  +A  D+ HE
Sbjct: 192 CTSCRDKRVRVIEPRKGTVVAEKDRPHE 219

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 12/148 (8%)
Query: 371 KAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPD--LV-----SVVTFRGHK 422
           K   +V  H   +  +A  P ND+++ +GS+D T  VW +PD  LV      V+T  GH 
Sbjct: 72  KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131
Query: 423 RGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCLKTF--EGHTSSVLRASFLTRGAQI 479
           + +  V + P  Q V+ ++G D  I +W +  G+ + T   + H  ++    +   GA I
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191
Query: 480 VSCGADGLVKLWTVRTGECIATYDK-HE 506
            +   D  V++   R G  +A  D+ HE
Sbjct: 192 CTSCRDKRVRVIEPRKGTVVAEKDRPHE 219

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 19/248 (7%)
Query: 250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 309
           +E  YLAV T+  +VQ++D+        +  HS  V      +LS    ++ +GS+   +
Sbjct: 157 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV-----GSLSWNSYILSSGSRSGHI 211
Query: 310 RLWDSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 368
              D   +   V   +GH   V  + ++   ++ L SG +D+ + VW      +    P+
Sbjct: 212 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWP-SAPGEGGWVPL 269
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCT---GSQDRTACVWRLPDLVSVVTFRGHKRGI 425
                     H   + ++A  P  S V     G+ DR   +W +     +     H + +
Sbjct: 270 Q-----TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-V 323
Query: 426 WSVEFSPVDQVVITASG--DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 483
            S+ +SP  + +I+  G     + IW     + +   +GHTS VL  +    GA + S  
Sbjct: 324 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 383
Query: 484 ADGLVKLW 491
           AD  ++LW
Sbjct: 384 ADETLRLW 391

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 19/248 (7%)
Query: 250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 309
           +E  YLAV T+  +VQ++D+        +  HS  V      +LS    ++ +GS+   +
Sbjct: 168 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV-----GSLSWNSYILSSGSRSGHI 222
Query: 310 RLWDSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 368
              D   +   V   +GH   V  + ++   ++ L SG +D+ + VW      +    P+
Sbjct: 223 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWP-SAPGEGGWVPL 280
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCT---GSQDRTACVWRLPDLVSVVTFRGHKRGI 425
                     H   + ++A  P  S V     G+ DR   +W +     +     H + +
Sbjct: 281 Q-----TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-V 334
Query: 426 WSVEFSPVDQVVITASG--DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 483
            S+ +SP  + +I+  G     + IW     + +   +GHTS VL  +    GA + S  
Sbjct: 335 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 394
Query: 484 ADGLVKLW 491
           AD  ++LW
Sbjct: 395 ADETLRLW 402

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 95/230 (41%), Gaps = 61/230 (26%)
Query: 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 356
           GH      ++++  L   L+S S DHT+ +W                             
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 357 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 400
                   F  ++DD +            K   +V AH  ++N L+  P ++ ++ TGS 
Sbjct: 237 WHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 401 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 452
           D+T  +W L +L + + TF  HK  I+ V +SP ++ ++ +SG D+ + +W +S      
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQ 356
Query: 453 ------DGS--CLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTV 493
                 DG    L    GHT+ +   S+      ++ S   D ++++W +
Sbjct: 357 SAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 74/187 (39%), Gaps = 20/187 (10%)
Query: 278 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 337
           L GHS  V  L   A  S  + + +G  DN V++WD+ S       T H  AV AVA+  
Sbjct: 213 LQGHSSEVCGL---AWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269
Query: 338 KLQNFLVSGSS--DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 395
              N L +G    D  I  W+               A+      G  + SL  +P+   +
Sbjct: 270 WQSNLLATGGGTMDKQIHFWN-----------AATGARVNTVDAGSQVTSLIWSPHSKEI 318
Query: 396 CT--GSQDRTACVWRLPD--LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 451
            +  G  D    +W      L   V    H   +     SP  +++ TA+ D+ +K W +
Sbjct: 319 MSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378
Query: 452 SDGSCLK 458
            DG  +K
Sbjct: 379 YDGDHVK 385

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 61/228 (26%)
Query: 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 356
           GH      ++++  L   L+S S DHT+ +W                             
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 357 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 400
                   F  ++DD +            K   +V AH  ++N L+  P ++ ++ TGS 
Sbjct: 237 WHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 401 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 452
           D+T  +W L +L + + TF  HK  I+ V +SP ++ ++ +SG D+ + +W +S      
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQ 356
Query: 453 ------DGS--CLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLW 491
                 DG    L    GHT+ +   S+      ++ S   D + ++W
Sbjct: 357 SAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 96/255 (37%), Gaps = 39/255 (15%)
Query: 312 WDSESRCCVGVG---------------------TGHMGAVGAVAFSKKLQNFLVSGSSDH 350
           WDSES+    VG                     TG   A+ +V F       ++SGS D+
Sbjct: 111 WDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 170
Query: 351 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 410
           T+ +  F+G           K K+    H K ++S+   P+ SL  +   D T  ++   
Sbjct: 171 TVAI--FEGPP--------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 220
Query: 411 DLVSVVTFR-------GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-G 462
           D      F         H   ++ + +SP    + +AS DKTIKIW+++     KT   G
Sbjct: 221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280
Query: 463 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFA 522
                 +   +     +VS  A+G +       G        H   I AL+     +   
Sbjct: 281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLF 340
Query: 523 TGGSDALVNLWHDST 537
           +  ++  +N W  ST
Sbjct: 341 SADAEGHINSWDIST 355

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 95/230 (41%), Gaps = 61/230 (26%)
Query: 325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---------------------------- 356
           GH      ++++  L   L+S S DHTI +W                             
Sbjct: 175 GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 234
Query: 357 --------FDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQ 400
                   F  ++DD +            K    V AH  ++N L+  P ++ ++ TGS 
Sbjct: 235 WHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSA 294
Query: 401 DRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS------ 452
           D+T  +W L +L + + +F  HK  I+ V++SP ++ ++ +SG D+ + +W +S      
Sbjct: 295 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQ 354
Query: 453 ------DGSCLKTF--EGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTV 493
                 DG     F   GHT+ +   S+      ++ S   D ++++W +
Sbjct: 355 SPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 17/108 (15%)
Query: 11  KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL-LAKKCVAT 69
           KV + D+  G C+H  +GH+  + ++ + P  D  +L + S D+ V++WD+  A  C+ T
Sbjct: 167 KVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY-ILATASADSRVKLWDVRRASGCLIT 225
Query: 70  LDK---------------HFSRVTSMAITSDGSTLISAGRDKVVNLWD 102
           LD+               H  +V  +  TSDG  L++ G D  + LW+
Sbjct: 226 LDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 25/189 (13%)
Query: 326 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 385
           H  +V  V +         S S D T+KVW  + L        N + + V + H      
Sbjct: 98  HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ--TADVFNFE-ETVYSHHMS---- 150
Query: 386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP-VDQVVITASGDK 444
             V+    LV  G++     +  L         +GH++ I +V +SP  D ++ TAS D 
Sbjct: 151 -PVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADS 209
Query: 445 TIKIWSISDGS-CLKTFEGHTSSVLRA---------------SFLTRGAQIVSCGADGLV 488
            +K+W +   S CL T + H     +A                F + G  +++ G D  +
Sbjct: 210 RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM 269
Query: 489 KLWTVRTGE 497
           +LW    GE
Sbjct: 270 RLWNSSNGE 278

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 19/248 (7%)
Query: 250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 309
           +E  YLAV T+  +VQ++D+        +  HS  V      +LS    ++ +GS+   +
Sbjct: 77  KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV-----GSLSWNSYILSSGSRSGHI 131
Query: 310 RLWDSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 368
              D   +   V   +GH   V  + ++   ++ L SG +D+ + VW      +    P+
Sbjct: 132 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWP-SAPGEGGWVPL 189
Query: 369 NLKAKAVVAAHGKDINSLAVAPNDSLVCT---GSQDRTACVWRLPDLVSVVTFRGHKRGI 425
                     H   + ++A  P  S V     G+ DR   +W +     +     H + +
Sbjct: 190 Q-----TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-V 243
Query: 426 WSVEFSPVDQVVITASG--DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 483
            S+ +SP  + +I+  G     + IW     + +   +GHTS VL  +    GA + S  
Sbjct: 244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 303
Query: 484 ADGLVKLW 491
           AD  ++LW
Sbjct: 304 ADETLRLW 311

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 418 FRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFL 473
           + GH   I  ++F P D  ++++ S D  +++W+I   + +  F   EGH   VL A + 
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 206
Query: 474 TRGAQIVSCGADGLVKLWTVRTGECI----ATYDKHEDK 508
             G +I+SCG D  +KLW + +   +     +YD + +K
Sbjct: 207 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 245

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 418 FRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFL 473
           + GH   I  ++F P D  ++++ S D  +++W+I   + +  F   EGH   VL A + 
Sbjct: 106 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 165
Query: 474 TRGAQIVSCGADGLVKLWTVRTGECI----ATYDKHEDK 508
             G +I+SCG D  +KLW + +   +     +YD + +K
Sbjct: 166 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 204

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 418 FRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFL 473
           + GH   I  ++F P D  ++++ S D  +++W+I   + +  F   EGH   VL A + 
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170
Query: 474 TRGAQIVSCGADGLVKLWTVRTGECI----ATYDKHEDK 508
             G +I+SCG D  +KLW + +   +     +YD + +K
Sbjct: 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 209

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 418 FRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFL 473
           + GH   I  ++F P D  ++++ S D  +++W+I   + +  F   EGH   VL A + 
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 474 TRGAQIVSCGADGLVKLWTVRTGECI----ATYDKHEDK 508
             G +I+SCG D  +KLW + +   +     +YD + +K
Sbjct: 170 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 208

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 418 FRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTF---EGHTSSVLRASFL 473
           + GH   I  ++F P D  ++++ S D  +++W+I   + +  F   EGH   VL A + 
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 474 TRGAQIVSCGADGLVKLWTVRTGECI----ATYDKHEDK 508
             G +I+SCG D  +KLW + +   +     +YD + +K
Sbjct: 170 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 208

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 81/213 (38%), Gaps = 14/213 (6%)
Query: 326 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD--I 383
           H   V AV  S   ++    G     +KVW       D   P N    + +    +D  I
Sbjct: 50  HGEVVCAVTISNPTRHVYTGGKG--CVKVW-------DISHPGNKSPVSQLDCLNRDNYI 100
Query: 384 NSLAVAPNDSLVCTGSQDRTACVWRL--PDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 441
            S  + P+   +  G +  T  +W L  P               +++  SP  +V  +  
Sbjct: 101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC 160
Query: 442 GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIAT 501
            D  I +W + + + ++ F+GHT           G ++ + G D  V+ W +R G  +  
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220
Query: 502 YDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
           +D    +I++L      E  A G   + V + H
Sbjct: 221 HD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLH 252

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 413 VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 472
           +  +   GH+R +  V+++    ++ + S D +  +W   +G  L T +GHT ++     
Sbjct: 23  MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV 82
Query: 473 LTRGAQIVSCGADGLVKLWTVRTGECIATY 502
                  V+  AD  +KLW V  G+C+AT+
Sbjct: 83  DCFTKYCVTGSADYSIKLWDVSNGQCVATW 112

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 454 GSCLKTFE--GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA 511
           GS +K  +  GH   + +  +   G  + SC  D    +W    GE + T D H   IW+
Sbjct: 20  GSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWS 79
Query: 512 LAVGKKTEMFATGGSDALVNLW 533
           + V   T+   TG +D  + LW
Sbjct: 80  IDVDCFTKYCVTGSADYSIKLW 101

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 103/275 (37%), Gaps = 52/275 (18%)
Query: 300 IVTGSKDNSVRLWD--SESRCCVGVGTGHMGAVGAVAFS-KKLQNFLVSGSSDHTIKVWS 356
           + T S D ++++++   E+   +   TGH G V  V ++  K    L S S D  + +W 
Sbjct: 24  LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND--SLVCTGSQDRTACVWRLPD--L 412
                   E+       AV A H   +NS+  AP++   L+   S D    V    +   
Sbjct: 84  --------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135
Query: 413 VSVVTFRGHKRGIWSVEFSPV-------------DQVVITASGDKTIKIWSI-SDGSCL- 457
            S +    H  G+ S  ++P               +  +T   D  +KIW   SD     
Sbjct: 136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195
Query: 458 --KTFEGHT---------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-----CIAT 501
              T EGH+          +VL  S+L   +Q  +C       +WT    +      +  
Sbjct: 196 LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC------IIWTQDNEQGPWKKTLLK 249
Query: 502 YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536
            +K  D +W  +      + A  G D  V LW ++
Sbjct: 250 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	768
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.98
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.85
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.84
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.83
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.82
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.81
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.8
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.79
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.77
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.76
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.75
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.75
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.74
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.73
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.69
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.68
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.66
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.66
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.65
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.64
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.63
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.63
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.61
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.61
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.61
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.6
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.6
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.58
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.58
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.58
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.57
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.57
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.56
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.55
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.55
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.53
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.52
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.52
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.5
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.5
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.49
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.48
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.46
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.46
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.46
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.46
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.43
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.43
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.42
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.4
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.38
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.37
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.36
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.36
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.36
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.36
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.35
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.33
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.33
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.32
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.31
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.31
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.3
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.28
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.27
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.27
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.25
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.25
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.22
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.21
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.14
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.14
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.13
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.12
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.1
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.1
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.07
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.03
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.01
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.97
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.94
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.94
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.92
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.88
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.88
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.81
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.81
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.8
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.79
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.79
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.77
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.74
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.74
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.73
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.71
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.69
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.67
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.66
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.65
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.65
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.65
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.63
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.61
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.6
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.57
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.57
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.55
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.54
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.5
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.48
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.48
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.47
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.46
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.46
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.46
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.44
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.4
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.37
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.31
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.31
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.25
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.24
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.17
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.1
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.07
3ott_A	758	Two-component system sensor histidine kinase; beta	98.07
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.04
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.03
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.03
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.02
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.0
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.97
3ott_A	758	Two-component system sensor histidine kinase; beta	97.93
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.88
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.86
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.85
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.83
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.83
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.76
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.75
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.74
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.68
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.68
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.54
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.49
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.45
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.43
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.39
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.33
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.22
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.12
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.1
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.06
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.01
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.94
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.9
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.87
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.86
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.81
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.75
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.72
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.69
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.65
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.59
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.47
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.39
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.35
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.34
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.27
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.83
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.64
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.53
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.51
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.46
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.24
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.95
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.82
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.72
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.71
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.26
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.14
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	92.4
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	92.26
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	91.48
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	90.8
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	87.33
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	86.62
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	85.66
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	84.23
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	83.47
3dwl_G	152	Actin-related protein 2/3 complex subunit 5; prope	82.74
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	82.32
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	81.42
1k8k_G	151	P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-	81.35
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	81.28
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	80.75

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.9e-60  Score=530.53  Aligned_cols=489  Identities=27%  Similarity=0.463  Sum_probs=406.1

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA   81 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~   81 (768)
                      +||+|+.|+.|+|||. ++++++.|.||.+.|++|+|+||+++  ||+++.|++|+|||+ +++++..+.+|.+.|.+++
T Consensus        30 ~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~--las~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~  105 (577)
T 2ymu_A           30 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQT--IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA  105 (577)
T ss_dssp             CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSE--EEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEE
T ss_pred             EEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCE--EEEEeCCCEEEEEEC-CCCEEEEEECCCCCEEEEE
Confidence            6899999999999995 77889999999999999999999987  999999999999996 7889999999999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEee-----------------------------------------
Q 004214           82 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEA-----------------------------------------  120 (768)
Q Consensus        82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~-----------------------------------------  120 (768)
                      |+|++++|++++.|+.+++|+...............+..                                         
T Consensus       106 ~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  185 (577)
T 2ymu_A          106 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG  185 (577)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEE
T ss_pred             ECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceee
Confidence            999999999999999999999866544333333333333                                         


Q ss_pred             EEecCCCCCccccccc-----cchh-------------hhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214          121 VCAIPPGSAFDSFLSS-----YNQQ-------------TIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI  182 (768)
Q Consensus       121 ~~~~~~~~~~~~~~~~-----~~~~-------------~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~  182 (768)
                      +.+.|++..++.....     +...             .......+.+..+++++.+|.|++|+.....+..        
T Consensus       186 ~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~--------  257 (577)
T 2ymu_A          186 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT--------  257 (577)
T ss_dssp             EEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE--------
T ss_pred             eeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEE--------
Confidence            4444444332211000     0000             0000111223456666667777777654432211        


Q ss_pred             cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214          183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE  262 (768)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~  262 (768)
                         ...+...+..+.+.|++..+++++.++.+++|+....        ....+.+|...|.+++|++ ++..+++++.++
T Consensus       258 ---~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~--------~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~  325 (577)
T 2ymu_A          258 ---LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVWGVAFSP-DGQTIASASDDK  325 (577)
T ss_dssp             ---ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--------EEEEECCCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred             ---EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--------EEEEEecCCCCeEEEEECC-CCCEEEEEeCCC
Confidence               1223466788999999999999999999999986432        3345678999999999985 778999999999


Q ss_pred             cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcE
Q 004214          263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF  342 (768)
Q Consensus       263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  342 (768)
                      .|++||.... ....+.+|...+.+++  +.+++.. +++|+.||.|++||. +++.+..+.+|...|.+++|+|+++ +
T Consensus       326 ~i~~w~~~~~-~~~~~~~~~~~v~~~~--~s~~g~~-l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~-~  399 (577)
T 2ymu_A          326 TVKLWNRNGQ-HLQTLTGHSSSVWGVA--FSPDGQT-IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ-T  399 (577)
T ss_dssp             CEEEEETTSC-EEEEECCCSSCEEEEE--ECTTSSE-EEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSS-C
T ss_pred             eEEEEeCCCC-eeEEEeCCCCCEEEEE--ECCCCCE-EEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCC-E
Confidence            9999997654 4557889999999997  7777776 999999999999995 5677888899999999999999976 7


Q ss_pred             EEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC
Q 004214          343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK  422 (768)
Q Consensus       343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  422 (768)
                      |++++.|+.|++||...           ........|...|++++|+|++++|++++.|+.|++||. +++.+..+.+|.
T Consensus       400 l~~~~~d~~v~~~~~~~-----------~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~  467 (577)
T 2ymu_A          400 IASASDDKTVKLWNRNG-----------QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHS  467 (577)
T ss_dssp             EEEEETTSEEEEECTTC-----------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCS
T ss_pred             EEEEeCCCEEEEEeCCC-----------CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCC
Confidence            99999999999999642           245567789999999999999999999999999999996 567888899999


Q ss_pred             CCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 004214          423 RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY  502 (768)
Q Consensus       423 ~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  502 (768)
                      ..|++++|+|++++|++++.|+.|++||. +++++..+.+|...|++++|+|+|++|++++.||.|++||. +++++.++
T Consensus       468 ~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~  545 (577)
T 2ymu_A          468 SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL  545 (577)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE
Confidence            99999999999999999999999999995 78999999999999999999999999999999999999995 78999999


Q ss_pred             ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214          503 DKHEDKIWALAVGKKTEMFATGGSDALVNLWH  534 (768)
Q Consensus       503 ~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~  534 (768)
                      .+|.+.|++++|+|||++|+|++.||.|++||
T Consensus       546 ~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          546 TGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            99999999999999999999999999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5e-59  Score=522.08  Aligned_cols=490  Identities=16%  Similarity=0.217  Sum_probs=398.4

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC--eeEEEecCccceeEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK--KCVATLDKHFSRVTS   79 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~--~~~~~l~~h~~~V~~   79 (768)
                      +||+++ ++.|++||+.++.....|.+|...|++++|+|+|++  ||+|+.||+|+|||+.++  .....+.+|.++|.+
T Consensus        32 ~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~--lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~  108 (611)
T 1nr0_A           32 KIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYY--CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD  108 (611)
T ss_dssp             EEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSE--EEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEE
T ss_pred             EEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcE--EEEEeCCCCEEEeECCCCcceeeEeecccCCceEE
Confidence            567776 679999999999889999999999999999999988  999999999999999754  345678899999999


Q ss_pred             EEEcCCCCEEEEEeCC----CeEEEEECCCCeeeeeeecc-eeEeeEEecCCCCCccccccccchhhhhcccCCcceEEE
Q 004214           80 MAITSDGSTLISAGRD----KVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI  154 (768)
Q Consensus        80 l~fs~d~~~L~s~~~d----g~i~vWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (768)
                      ++|+|+|++|++++.+    +.|++||  .++....+..+ ..+.+++|+|++.                      ..++
T Consensus       109 v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~----------------------~~l~  164 (611)
T 1nr0_A          109 ISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRP----------------------FRII  164 (611)
T ss_dssp             EEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSS----------------------CEEE
T ss_pred             EEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCC----------------------eEEE
Confidence            9999999999999865    3677776  45555555544 4689999999864                      1589


Q ss_pred             EeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEee
Q 004214          155 TVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKR  234 (768)
Q Consensus       155 ~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~  234 (768)
                      +++.|+.|++||..++.....          ...+...+..+.|+|++..+++++.|+.+++|+................
T Consensus       165 s~s~D~~v~lwd~~~~~~~~~----------l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~  234 (611)
T 1nr0_A          165 SGSDDNTVAIFEGPPFKFKST----------FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK  234 (611)
T ss_dssp             EEETTSCEEEEETTTBEEEEE----------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS
T ss_pred             EEeCCCeEEEEECCCCeEeee----------eccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccc
Confidence            999999999999877643321          2234567899999999999999999999999997654311000000001


Q ss_pred             ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeee--------------------------------------
Q 004214          235 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY--------------------------------------  276 (768)
Q Consensus       235 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~--------------------------------------  276 (768)
                      ..+|.+.|.+++|+| ++.+|++++.|+.|++||+.++++..                                      
T Consensus       235 ~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~  313 (611)
T 1nr0_A          235 NVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL  313 (611)
T ss_dssp             SCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT
T ss_pred             ccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC
Confidence            127899999999985 78899999999999999998876543                                      


Q ss_pred             -----eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee-ecccCcEEEEEEecCCCcEEEEEeCCC
Q 004214          277 -----VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG-TGHMGAVGAVAFSKKLQNFLVSGSSDH  350 (768)
Q Consensus       277 -----~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg  350 (768)
                           .+.+|...|.+++  +.+++.. |++++.||.|++||+.++.....+ .+|...|.+++|++++  .+++++.|+
T Consensus       314 ~~~~~~~~gh~~~v~~l~--~spdg~~-l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~--~l~s~s~d~  388 (611)
T 1nr0_A          314 GSIDQVRYGHNKAITALS--SSADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG--DLFTVSWDD  388 (611)
T ss_dssp             TEEEEEECCCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS--CEEEEETTT
T ss_pred             CCcceEEcCCCCCEEEEE--EeCCCCE-EEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC--cEEEEEcCC
Confidence                 3457889999997  7777775 999999999999999999887765 6799999999999875  488999999


Q ss_pred             eEEEEeCCCCCCCCccc----cccc--------------------------eeeEeeccCCCeEEEEEccCCCEEEEEeC
Q 004214          351 TIKVWSFDGLSDDAEQP----MNLK--------------------------AKAVVAAHGKDINSLAVAPNDSLVCTGSQ  400 (768)
Q Consensus       351 ~i~iwd~~~~~~~~~~~----~~~~--------------------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  400 (768)
                      ++++|++..........    ....                          .......|...+.+++|+|+|++|++|+.
T Consensus       389 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~  468 (611)
T 1nr0_A          389 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ  468 (611)
T ss_dssp             EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred             ceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCC
Confidence            99999987543211000    0000                          00011235677899999999999999999


Q ss_pred             CCcEEEEeCCCCce--EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC-CceeEE--eecCCCcEEEEEEEeC
Q 004214          401 DRTACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD-GSCLKT--FEGHTSSVLRASFLTR  475 (768)
Q Consensus       401 dg~i~i~d~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~-~~~~~~--~~~~~~~v~~~~~s~~  475 (768)
                      |++|++||+.++..  ... .+|...|++++|+|+|++|++++.|++|++||+.+ ++++..  +.+|...|++++|+|+
T Consensus       469 D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspd  547 (611)
T 1nr0_A          469 DSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD  547 (611)
T ss_dssp             TSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT
T ss_pred             CCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCC
Confidence            99999999987643  233 67999999999999999999999999999999987 666554  3459999999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCe-EE-EEeccC-CCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          476 GAQIVSCGADGLVKLWTVRTGE-CI-ATYDKH-EDKIWALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       476 ~~~l~s~~~dg~i~iwd~~~~~-~~-~~~~~~-~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      |++|++|+.|++|++||+.++. +. ..+.+| ...|++++|+|+++ |++++.||.|++|++.
T Consensus       548 g~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          548 NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             SSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred             CCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence            9999999999999999998875 33 567789 89999999999998 9999999999999973

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.8e-57  Score=508.93  Aligned_cols=471  Identities=27%  Similarity=0.455  Sum_probs=400.5

Q ss_pred             EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004214           22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW  101 (768)
Q Consensus        22 ~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vW  101 (768)
                      ..+.|.||++.|+||+|||||++  ||+|+.|++|+|||. +++++.++.+|.+.|++++|+||+++|++++.|++|++|
T Consensus         8 e~~~L~GH~~~V~~~a~spdg~~--las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vW   84 (577)
T 2ymu_A            8 ERNRLEAHSSSVRGVAFSPDGQT--IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW   84 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSC--EEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EeeEECCCCCcEEEEEECCCCCE--EEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            46789999999999999999998  999999999999995 789999999999999999999999999999999999999


Q ss_pred             ECCCCeeeeeeec-ceeEeeEEecCCCCCccccccccc---------------------------h--------------
Q 004214          102 DLRDYSCKLTVPT-YEMVEAVCAIPPGSAFDSFLSSYN---------------------------Q--------------  139 (768)
Q Consensus       102 d~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~---------------------------~--------------  139 (768)
                      |+ +++++..+.. ...+.+++|+|++..++.......                           .              
T Consensus        85 d~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  163 (577)
T 2ymu_A           85 NR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV  163 (577)
T ss_dssp             ET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred             EC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccce
Confidence            96 4566666654 456899999998875432110000                           0              


Q ss_pred             ------------------hhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccC
Q 004214          140 ------------------QTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPS  201 (768)
Q Consensus       140 ------------------~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (768)
                                        ........+.+..+++++.+|.|++|+.....+...           ..+...+..++++|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~-----------~~~~~~v~~~~~s~d  232 (577)
T 2ymu_A          164 KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL-----------TGHSSSVRGVAFSPD  232 (577)
T ss_dssp             EEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE-----------ECCSSCEEEEEECTT
T ss_pred             eccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEE-----------ecCCCCEEEEEECCC
Confidence                              000001112344688999999999999755432211           123466788999999


Q ss_pred             CCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCC
Q 004214          202 NQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH  281 (768)
Q Consensus       202 ~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~  281 (768)
                      +..+++++.|+.+++|+....        ....+.+|...|.+++|.+ ++..+++++.++.|++|+.. ++....+.+|
T Consensus       233 g~~l~~~~~d~~i~~w~~~~~--------~~~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h  302 (577)
T 2ymu_A          233 GQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRN-GQLLQTLTGH  302 (577)
T ss_dssp             SSCEEEEETTSCEEEECTTSC--------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETT-SCEEEEECCC
T ss_pred             CCEEEEEeCCCEEEEEeCCCC--------EEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeCC-CcEEEEEecC
Confidence            999999999999999985432        3345678899999999985 77899999999999999964 5667788999


Q ss_pred             ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCC
Q 004214          282 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS  361 (768)
Q Consensus       282 ~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  361 (768)
                      ...|.+++  +.+++.. +++++.||.|++||.... .+..+.+|...+.+++|+|++. ++++++.||.|++|+...  
T Consensus       303 ~~~v~~~~--~~~~~~~-l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~v~~~~~~~--  375 (577)
T 2ymu_A          303 SSSVWGVA--FSPDGQT-IASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNG--  375 (577)
T ss_dssp             SSCEEEEE--ECTTSSE-EEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTC--
T ss_pred             CCCeEEEE--ECCCCCE-EEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEcCCC--
Confidence            99999997  6677665 999999999999998755 4566788999999999999976 799999999999999642  


Q ss_pred             CCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee
Q 004214          362 DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS  441 (768)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~  441 (768)
                               ........|...|++++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++
T Consensus       376 ---------~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~  445 (577)
T 2ymu_A          376 ---------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASAS  445 (577)
T ss_dssp             ---------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ---------CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEc
Confidence                     245566789999999999999999999999999999995 6778888999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEE
Q 004214          442 GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF  521 (768)
Q Consensus       442 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l  521 (768)
                      .|+.|++||. +++++..+.+|...|++++|+|++++|++++.|+.|++||. +++++..+.+|...|++++|+|++++|
T Consensus       446 ~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l  523 (577)
T 2ymu_A          446 DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTI  523 (577)
T ss_dssp             TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred             CCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEE
Confidence            9999999996 67889999999999999999999999999999999999994 789999999999999999999999999


Q ss_pred             EEEeCCCcEEEEEcC
Q 004214          522 ATGGSDALVNLWHDS  536 (768)
Q Consensus       522 ~s~~~dg~v~vw~~~  536 (768)
                      ++++.||.|++|+..
T Consensus       524 ~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          524 ASASDDKTVKLWNRN  538 (577)
T ss_dssp             EEEETTSEEEEECTT
T ss_pred             EEEECcCEEEEEeCC
Confidence            999999999999964

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.6e-54  Score=483.86  Aligned_cols=448  Identities=18%  Similarity=0.212  Sum_probs=372.3

Q ss_pred             cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 004214           28 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS  107 (768)
Q Consensus        28 gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~  107 (768)
                      .+++.+.+++|+|||+.  ||+++ +++|++||+.+++....+.+|...|++++|+|+|++|++++.|++|++||+.+++
T Consensus        16 ~~~g~~~~~~~spdg~~--l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~   92 (611)
T 1nr0_A           16 TARGTAVVLGNTPAGDK--IQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT   92 (611)
T ss_dssp             CCTTCCCCCEECTTSSE--EEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred             cccCceeEEeeCCCCCE--EEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc
Confidence            36888999999999987  88887 5699999999999999999999999999999999999999999999999997654


Q ss_pred             e--eeeee-cceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCC----cEEEEEEcCCceeeeecCCce
Q 004214          108 C--KLTVP-TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER----GIVRMWNADSACLYEQKSSDV  180 (768)
Q Consensus       108 ~--~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~i~iwd~~~~~~~~~~~~~~  180 (768)
                      .  ...+. +...+.+++|+|++.                       .+++++.+    +.|++||....  .       
T Consensus        93 ~~~~~~~~~~~~~v~~v~fs~dg~-----------------------~l~~~~~~~~~~~~v~~wd~~~~--~-------  140 (611)
T 1nr0_A           93 HILKTTIPVFSGPVKDISWDSESK-----------------------RIAAVGEGRERFGHVFLFDTGTS--N-------  140 (611)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTSC-----------------------EEEEEECCSSCSEEEEETTTCCB--C-------
T ss_pred             ceeeEeecccCCceEEEEECCCCC-----------------------EEEEEECCCCceeEEEEeeCCCC--c-------
Confidence            3  33444 345799999999986                       67777654    57888884321  1       


Q ss_pred             eecccccCcccceeEEEEccCCCc-eEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEe
Q 004214          181 TISFEMDDSKRGFTAATVLPSNQG-LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT  259 (768)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  259 (768)
                         .....+...+..+.|+|++.. +++++.|+.+++|+....       .....+.+|...|.+++|+| ++++|++++
T Consensus       141 ---~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-------~~~~~l~~H~~~V~~v~fsp-dg~~las~s  209 (611)
T 1nr0_A          141 ---GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-------KFKSTFGEHTKFVHSVRYNP-DGSLFASTG  209 (611)
T ss_dssp             ---BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-------EEEEEECCCSSCEEEEEECT-TSSEEEEEE
T ss_pred             ---ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-------eEeeeeccccCceEEEEECC-CCCEEEEEE
Confidence               112345578899999999874 899999999999996532       23456788999999999986 788999999


Q ss_pred             CCCcEEEEECCCceeeeeee-------CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE-----------
Q 004214          260 NIEQVQVYDLSSMSCSYVLA-------GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG-----------  321 (768)
Q Consensus       260 ~~~~i~i~d~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------  321 (768)
                      .|+.|++||..+++....+.       +|...|.+++  +.+++.. |++++.|++|++||+.+++++.           
T Consensus       210 ~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~--~spdg~~-l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~  286 (611)
T 1nr0_A          210 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT--WSPDGTK-IASASADKTIKIWNVATLKVEKTIPVGTRIEDQ  286 (611)
T ss_dssp             TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE--ECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred             CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEE--ECCCCCE-EEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence            99999999999998887774       7999999998  7777765 9999999999999998876543           


Q ss_pred             --------------------------------eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccc
Q 004214          322 --------------------------------VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN  369 (768)
Q Consensus       322 --------------------------------~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  369 (768)
                                                      .+.+|...|.+++|+|+++ +|++++.|++|++||+..+.        
T Consensus       287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~--------  357 (611)
T 1nr0_A          287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGI--------  357 (611)
T ss_dssp             EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCC--------
T ss_pred             eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCc--------
Confidence                                            3357899999999999976 89999999999999998542        


Q ss_pred             cceeeE-eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCce----------------------------------
Q 004214          370 LKAKAV-VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS----------------------------------  414 (768)
Q Consensus       370 ~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~----------------------------------  414 (768)
                        .... ...|...|.+++|++++ .+++++.|+.+++|++.+...                                  
T Consensus       358 --~~~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v  434 (611)
T 1nr0_A          358 --SNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI  434 (611)
T ss_dssp             --EEECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEE
T ss_pred             --eeeecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceE
Confidence              1111 24688899999999765 678889999999999754321                                  


Q ss_pred             -------EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce--eEEeecCCCcEEEEEEEeCCCEEEEEeCC
Q 004214          415 -------VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGAD  485 (768)
Q Consensus       415 -------~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  485 (768)
                             +..+ .|...+.+++|+|+|++|++|+.|++|++||+.++..  +.. .+|...|++++|+|+|++|++++.|
T Consensus       435 ~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d  512 (611)
T 1nr0_A          435 AIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQS  512 (611)
T ss_dssp             EEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCC
Confidence                   1112 2556789999999999999999999999999987653  344 6799999999999999999999999


Q ss_pred             CcEEEEECCC-CeEEEE--eccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          486 GLVKLWTVRT-GECIAT--YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       486 g~i~iwd~~~-~~~~~~--~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      ++|++|++.+ ++++..  +..|...|++++|+|+|++|++|+.|+.|++|++.++
T Consensus       513 ~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~  568 (611)
T 1nr0_A          513 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP  568 (611)
T ss_dssp             SCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred             CCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCc
Confidence            9999999988 666554  3449999999999999999999999999999998764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.5e-55  Score=534.59  Aligned_cols=485  Identities=20%  Similarity=0.292  Sum_probs=409.6

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA   81 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~   81 (768)
                      +||+|+.||.|+|||+.+++.+..+.+|.+.|++++|+|++++  +++|+.||+|+|||+.+++++..+.+|...|.+++
T Consensus       629 ~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~--l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~  706 (1249)
T 3sfz_A          629 RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY--IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCH  706 (1249)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE--EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCE--EEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEE
Confidence            6899999999999999999999999999999999999999987  99999999999999999999999999999999999


Q ss_pred             EcC--CCCEEEEEeCCCeEEEEECCCCeeeeeeecc-eeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeC
Q 004214           82 ITS--DGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE  158 (768)
Q Consensus        82 fs~--d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (768)
                      |+|  ++.++++++.|+.|++||+.++++...+..+ ..+.+++|+|++.                       .+++++.
T Consensus       707 ~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-----------------------~l~s~s~  763 (1249)
T 3sfz_A          707 FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-----------------------LLASCSA  763 (1249)
T ss_dssp             ECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT-----------------------EEEEEES
T ss_pred             EecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCC-----------------------EEEEEEC
Confidence            999  5568999999999999999999988887654 5689999999886                       8899999


Q ss_pred             CcEEEEEEcCCceeeeecCCce---------------------------------------------eecccccCcccce
Q 004214          159 RGIVRMWNADSACLYEQKSSDV---------------------------------------------TISFEMDDSKRGF  193 (768)
Q Consensus       159 ~g~i~iwd~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~~  193 (768)
                      ||.|++||+.++..........                                             ........+...+
T Consensus       764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v  843 (1249)
T 3sfz_A          764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI  843 (1249)
T ss_dssp             SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred             CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence            9999999988773221110000                                             0000011344667


Q ss_pred             eEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec------------------------
Q 004214          194 TAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG------------------------  249 (768)
Q Consensus       194 ~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------------  249 (768)
                      ..+.++|++..+++++.+|.+.+|+.....       ....+.+|...|.+++|++                        
T Consensus       844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~-------~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~  916 (1249)
T 3sfz_A          844 QYCDFSPYDHLAVIALSQYCVELWNIDSRL-------KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK  916 (1249)
T ss_dssp             CEEEECSSTTEEEEECSSSCEEEEETTTTE-------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHS
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-------eeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccce
Confidence            788999999999999999999999987542       2233345555555555543                        


Q ss_pred             ------------------------------------------------------CCCCEEEEEeCCCcEEEEECCCceee
Q 004214          250 ------------------------------------------------------EEEQYLAVATNIEQVQVYDLSSMSCS  275 (768)
Q Consensus       250 ------------------------------------------------------~~~~~l~~~~~~~~i~i~d~~~~~~~  275 (768)
                                                                            +++.++++|+.+|.|++|++.++...
T Consensus       917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~  996 (1249)
T 3sfz_A          917 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF  996 (1249)
T ss_dssp             CCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCE
T ss_pred             eeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCcee
Confidence                                                                  23334444444555555555555666


Q ss_pred             eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEE
Q 004214          276 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW  355 (768)
Q Consensus       276 ~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw  355 (768)
                      ..+.+|...|.++.  +.+++.. +++++.||.|++||+.++.... ...|...|.+++|+|++  .+++++.||.|++|
T Consensus       997 ~~~~~h~~~v~~l~--~s~dg~~-l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~--~l~~~~~dg~v~vw 1070 (1249)
T 3sfz_A          997 SSGVGHKKAVRHIQ--FTADGKT-LISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDS--RLLSWSFDGTVKVW 1070 (1249)
T ss_dssp             EECCCCSSCCCCEE--ECSSSSC-EEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSS--EEEEEESSSEEEEE
T ss_pred             eecccCCCceEEEE--ECCCCCE-EEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCC--cEEEEECCCcEEEE
Confidence            66778999999997  7777776 9999999999999999998774 56899999999999974  58999999999999


Q ss_pred             eCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCC
Q 004214          356 SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ  435 (768)
Q Consensus       356 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~  435 (768)
                      |+..+          .....+..|...|.+++|+|+++++++++.||+|++||+.+++.+..+.+|..+|++++|+|+++
T Consensus      1071 d~~~~----------~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~ 1140 (1249)
T 3sfz_A         1071 NVITG----------RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1140 (1249)
T ss_dssp             ETTTT----------CCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSS
T ss_pred             ECCCC----------ceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCC
Confidence            99854          24456678999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCceeEEe---------ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCC
Q 004214          436 VVITASGDKTIKIWSISDGSCLKTF---------EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE  506 (768)
Q Consensus       436 ~l~t~~~d~~i~iwd~~~~~~~~~~---------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  506 (768)
                      +|++|+.||.|++||+.+++++..+         .+|...|++++|+|+|++|++++  |.|++||+.+++++..+..|.
T Consensus      1141 ~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~ 1218 (1249)
T 3sfz_A         1141 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNG 1218 (1249)
T ss_dssp             EEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSS
T ss_pred             EEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeeccC
Confidence            9999999999999999999887766         67999999999999999999886  899999999999999999999


Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          507 DKIWALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       507 ~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      ..|++++|+|++.+|++++.||.|++|++.
T Consensus      1219 ~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A         1219 TNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp             CCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred             CcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence            999999999999999999999999999874

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.4e-53  Score=481.60  Aligned_cols=480  Identities=16%  Similarity=0.210  Sum_probs=397.2

Q ss_pred             EEEeecCCCcEEEEECCCC----EEEEEEEcCCCc-EEEEEEee--CCCccEEEEEeCCCcEEEEECCCC--------ee
Q 004214            2 FALLEGADRKVLVWDVDGG----FCTHYFKGHKGV-VSSILFHP--DTDKSLLFSGSDDATVRVWDLLAK--------KC   66 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~----~~~~~l~gh~~~-V~~l~~sp--d~~~~~l~sg~~dg~I~iWd~~~~--------~~   66 (768)
                      +||+++ ++.|+|||+.++    ..+..+.+|.+. |++++|+|  ++++  |++|+.||+|+|||+.++        +.
T Consensus        32 ~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~--l~s~~~dg~v~vw~~~~~~~~~~~~~~~  108 (615)
T 1pgu_A           32 AIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY--LCSGDESGKVIVWGWTFDKESNSVEVNV  108 (615)
T ss_dssp             EEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCE--EEEEETTSEEEEEEEEEEGGGTEEEEEE
T ss_pred             EEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCE--EEEecCCCEEEEEeCCCCcccccccccc
Confidence            577777 899999999999    889999999999 99999999  9987  999999999999999755        77


Q ss_pred             EEEecCccceeEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeeeeeeec-ceeEeeEEecCCCCCccccccccchhh
Q 004214           67 VATLDKHFSRVTSMAITSDGSTLISAGRD----KVVNLWDLRDYSCKLTVPT-YEMVEAVCAIPPGSAFDSFLSSYNQQT  141 (768)
Q Consensus        67 ~~~l~~h~~~V~~l~fs~d~~~L~s~~~d----g~i~vWd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~  141 (768)
                      +..+..|..+|.+++|+|++++|++++.+    +.|.+||  .++.+..+.. ...+.++.|+|++..            
T Consensus       109 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~------------  174 (615)
T 1pgu_A          109 KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPM------------  174 (615)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSC------------
T ss_pred             cchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCc------------
Confidence            88899999999999999999999999987    6888888  5555555554 446889999998742            


Q ss_pred             hhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCccc---ceeEEEEccC-CCceEEEEecCeEEEE
Q 004214          142 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKR---GFTAATVLPS-NQGLLCVTADQQLLLY  217 (768)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~l~~~~~dg~i~~~  217 (768)
                                .+++++.+|.|++||+.++.......          .+..   .+..+.++|+ +..+++++.++.+.+|
T Consensus       175 ----------~l~~~~~d~~v~vwd~~~~~~~~~~~----------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw  234 (615)
T 1pgu_A          175 ----------RSMTVGDDGSVVFYQGPPFKFSASDR----------THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF  234 (615)
T ss_dssp             ----------EEEEEETTTEEEEEETTTBEEEEEEC----------SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEE
T ss_pred             ----------EEEEEeCCCcEEEEeCCCcceeeeec----------ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence                      68999999999999998875433221          1234   6889999999 8999999999999999


Q ss_pred             eeccCcccceeeEEEeee-c---ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCC----ccceEEEe
Q 004214          218 TTVEVPEKKMELILSKRL-V---GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH----SEIVLCLD  289 (768)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~----~~~v~~l~  289 (768)
                      +.....       ....+ .   +|...|.+++|+  ++.++++++.++.|++||+.+++....+..+    ...+.++.
T Consensus       235 d~~~~~-------~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  305 (615)
T 1pgu_A          235 DGKSGE-------FLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV  305 (615)
T ss_dssp             ETTTCC-------EEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEE
T ss_pred             ECCCCC-------EeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEE
Confidence            987543       22233 3   788999999998  8889999999999999999999998888776    35666664


Q ss_pred             eeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecC-------------------------------
Q 004214          290 TCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK-------------------------------  338 (768)
Q Consensus       290 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-------------------------------  338 (768)
                        + +++.. +++++.||.|++||+.+++.+..+.+|...|.+++| |+                               
T Consensus       306 --~-~~~~~-l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~  380 (615)
T 1pgu_A          306 --A-TGNGR-IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN  380 (615)
T ss_dssp             --E-EETTE-EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEEC
T ss_pred             --e-CCCCe-EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEE
Confidence              3 45555 999999999999999999998888888888888877 54                               


Q ss_pred             --CCcEEEEEeCCCeEEEEeCCCCCCCCc------------------------cccccceeeEeeccCCCeEEEEEccCC
Q 004214          339 --LQNFLVSGSSDHTIKVWSFDGLSDDAE------------------------QPMNLKAKAVVAAHGKDINSLAVAPND  392 (768)
Q Consensus       339 --~~~~l~s~~~dg~i~iwd~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~i~~~~~s~~~  392 (768)
                        +. .+++++.|+.|++|++........                        ......... ...+...+.+++|+  +
T Consensus       381 ~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~  456 (615)
T 1pgu_A          381 SKAQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK-SVRLNSPGSAVSLS--Q  456 (615)
T ss_dssp             CSTT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEE-EEECSSCEEEEEEC--S
T ss_pred             CCCc-EEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceee-ecccCCCceEEEEc--C
Confidence              12 344445555555554432110000                        000001111 12367789999999  8


Q ss_pred             CEEEEEeC-CCcEEEEeCCCCceE-EEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec-CCCcEEE
Q 004214          393 SLVCTGSQ-DRTACVWRLPDLVSV-VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG-HTSSVLR  469 (768)
Q Consensus       393 ~~l~~~~~-dg~i~i~d~~~~~~~-~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~  469 (768)
                      +++++++. ||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++++..+.+ |...|++
T Consensus       457 ~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~  536 (615)
T 1pgu_A          457 NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINA  536 (615)
T ss_dssp             SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEE
T ss_pred             CEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeE
Confidence            89999999 999999999987665 66778999999999999999999999999999999999999999998 9999999


Q ss_pred             EEEEe----------CCCEEEEEeCCCcEEEEECCCC-eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          470 ASFLT----------RGAQIVSCGADGLVKLWTVRTG-ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       470 ~~~s~----------~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      ++|+|          ++++|++++.||.|++||+.++ +++..+.+|...|++++|+|+++ |++++.||.|++|++.+
T Consensus       537 ~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          537 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             EEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             EEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            99999          9999999999999999999998 89999999999999999999999 99999999999999875

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.6e-51  Score=502.37  Aligned_cols=465  Identities=20%  Similarity=0.300  Sum_probs=399.5

Q ss_pred             EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214           23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD  102 (768)
Q Consensus        23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd  102 (768)
                      ...+.+|.+.|++++|+|+|++  +++|+.||+|+|||+.+++.+..+.+|.+.|++++|+|+|++|++++.|+.|++||
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~--l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd  685 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD  685 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSE--EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             eEEEecccccEEEEEECCCCCE--EEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence            4577899999999999999987  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeeeeeecc-eeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCcee
Q 004214          103 LRDYSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT  181 (768)
Q Consensus       103 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~  181 (768)
                      +.+++++..+..+ ..+.+++|+|++..                     ..+++++.||.|++||+.++......     
T Consensus       686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------------------~~l~sg~~d~~v~vwd~~~~~~~~~~-----  739 (1249)
T 3sfz_A          686 SATGKLVHTYDEHSEQVNCCHFTNKSNH---------------------LLLATGSNDFFLKLWDLNQKECRNTM-----  739 (1249)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSC---------------------CEEEEEETTSCEEEEETTSSSEEEEE-----
T ss_pred             CCCCceEEEEcCCCCcEEEEEEecCCCc---------------------eEEEEEeCCCeEEEEECCCcchhhee-----
Confidence            9999999888654 45889999886542                     27899999999999999988433221     


Q ss_pred             ecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCccccee---------------------------------
Q 004214          182 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKME---------------------------------  228 (768)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~---------------------------------  228 (768)
                           ..+...+..+.++|++..+++++.||.+.+|+..........                                 
T Consensus       740 -----~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  814 (1249)
T 3sfz_A          740 -----FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII  814 (1249)
T ss_dssp             -----CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred             -----cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEE
Confidence                 234467889999999999999999999999998654311000                                 


Q ss_pred             ---------------eEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeee
Q 004214          229 ---------------LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCAL  293 (768)
Q Consensus       229 ---------------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~  293 (768)
                                     ........++...+.+++|++ ++.++++++.+|.|++||+.++.....+.+|...|.++.  +.
T Consensus       815 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~--~s  891 (1249)
T 3sfz_A          815 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM--FS  891 (1249)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEE--EC
T ss_pred             EEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEE--EC
Confidence                           001112236788899999985 778999999999999999999999999999999999997  66


Q ss_pred             cCCCEEEEEEeCCCeEEEEeCC----------------------------------------------------------
Q 004214          294 SSGKILIVTGSKDNSVRLWDSE----------------------------------------------------------  315 (768)
Q Consensus       294 ~~~~~~l~~~~~dg~i~iwd~~----------------------------------------------------------  315 (768)
                      +++.. +++++.||.|++|++.                                                          
T Consensus       892 pdg~~-l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  970 (1249)
T 3sfz_A          892 PDGSS-FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS  970 (1249)
T ss_dssp             TTSSE-EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEEC
T ss_pred             CCCCE-EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEc
Confidence            66665 7888888888877632                                                          


Q ss_pred             ---------------------CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceee
Q 004214          316 ---------------------SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA  374 (768)
Q Consensus       316 ---------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  374 (768)
                                           ++.....+.+|...|.+++|+|+++ ++++++.||.|++||+..+.           ..
T Consensus       971 p~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~i~vwd~~~~~-----------~~ 1038 (1249)
T 3sfz_A          971 PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK-TLISSSEDSVIQVWNWQTGD-----------YV 1038 (1249)
T ss_dssp             TTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSS-CEEEECSSSBEEEEETTTTE-----------EE
T ss_pred             CCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCc-----------eE
Confidence                                 3334445567889999999999976 79999999999999997542           22


Q ss_pred             EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214          375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG  454 (768)
Q Consensus       375 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~  454 (768)
                      ....|...|.+++|+|++ .+++++.||.|++||+.+++....+.+|...|++++|+|+++++++++.||+|++||+.++
T Consensus      1039 ~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~ 1117 (1249)
T 3sfz_A         1039 FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117 (1249)
T ss_dssp             CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSS
T ss_pred             EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCc
Confidence            345788999999999976 5788899999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEe---------ccCCCcEEEEEEcCCCCEEEEEe
Q 004214          455 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY---------DKHEDKIWALAVGKKTEMFATGG  525 (768)
Q Consensus       455 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------~~~~~~v~~l~~s~~~~~l~s~~  525 (768)
                      +++..+.+|...|++++|+|+|++|++|+.||.|++||+.+++++..+         ..|.+.|++++|+|+|++|++++
T Consensus      1118 ~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A         1118 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197 (1249)
T ss_dssp             SCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES
T ss_pred             ceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC
Confidence            999999999999999999999999999999999999999999887765         56899999999999999999986


Q ss_pred             CCCcEEEEEcCCHH
Q 004214          526 SDALVNLWHDSTAA  539 (768)
Q Consensus       526 ~dg~v~vw~~~~~~  539 (768)
                        |.|++|++.+++
T Consensus      1198 --g~v~vwd~~~g~ 1209 (1249)
T 3sfz_A         1198 --GYLKWWNVATGD 1209 (1249)
T ss_dssp             --SSEEEBCSSSCB
T ss_pred             --CeEEEEECCCCc
Confidence              899999988754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-51  Score=473.80  Aligned_cols=493  Identities=10%  Similarity=0.065  Sum_probs=372.0

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA   81 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~   81 (768)
                      +||+|+.||.|+|||..++++...+ .|...|++++|+| |++  |++++.|++|+|||+.+++++..+. |.+.|++++
T Consensus        31 ~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~--L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~  105 (902)
T 2oaj_A           31 LLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIY--LVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSID  105 (902)
T ss_dssp             EEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTE--EEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEE
T ss_pred             EEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCE--EEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEE
Confidence            7999999999999999998876654 4889999999999 665  9999999999999999999998886 778899999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeeee-e----------e-ecceeEeeEEecCCCCCccccccccchhhhhcccCCc
Q 004214           82 ITSDGSTLISAGRDKVVNLWDLRDYSCKL-T----------V-PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL  149 (768)
Q Consensus        82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~-~----------~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (768)
                      |+|++++|++++.||.|++||+.++++.. .          . .+...+.+++|+|.+.                     
T Consensus       106 ~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~---------------------  164 (902)
T 2oaj_A          106 TDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI---------------------  164 (902)
T ss_dssp             CCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE---------------------
T ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC---------------------
Confidence            99999999999999999999999987641 1          1 1234578888888532                     


Q ss_pred             ceEEEEeeCCcEEEEEEcCCceeeeecCCceeec--------ccccCcccceeEEEEccCCCceEEEEecCeEEEEeecc
Q 004214          150 EIHFITVGERGIVRMWNADSACLYEQKSSDVTIS--------FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE  221 (768)
Q Consensus       150 ~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~  221 (768)
                       ..+++++.+|.| +||+.++.............        .....+...+..+.|+|++..+++++.||.+++|+...
T Consensus       165 -~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~  242 (902)
T 2oaj_A          165 -GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANS  242 (902)
T ss_dssp             -EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred             -CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence             278899999999 99999885443222110000        00112235689999999999999999999999999876


Q ss_pred             CcccceeeEEEeee---c-------------ccCCceeEEEEecC---C-CCEEEEEeCC-----CcEEEEECC------
Q 004214          222 VPEKKMELILSKRL---V-------------GYNEEILDLKFLGE---E-EQYLAVATNI-----EQVQVYDLS------  270 (768)
Q Consensus       222 ~~~~~~~~~~~~~~---~-------------~~~~~i~~~~~~~~---~-~~~l~~~~~~-----~~i~i~d~~------  270 (768)
                      ....     ..+.+   .             .+...|.+++|.+.   + ..++++|+.+     ..+.+|++.      
T Consensus       243 g~~~-----~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~  317 (902)
T 2oaj_A          243 GHMI-----MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS  317 (902)
T ss_dssp             CCEE-----EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred             CcEE-----EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence            4311     11111   1             13457999999752   2 3567777554     378888842      


Q ss_pred             ------------Cceeeeeee-CCccceEEEeeeeec---------CCCEEEEEEeCCCeEEEEeCCCceEEEe------
Q 004214          271 ------------SMSCSYVLA-GHSEIVLCLDTCALS---------SGKILIVTGSKDNSVRLWDSESRCCVGV------  322 (768)
Q Consensus       271 ------------~~~~~~~~~-~~~~~v~~l~~~~~~---------~~~~~l~~~~~dg~i~iwd~~~~~~~~~------  322 (768)
                                  +......+. .+...+..+.  +.+         .+...+++++.||.|++||+.++.....      
T Consensus       318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~  395 (902)
T 2oaj_A          318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNIL--PIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQ  395 (902)
T ss_dssp             GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEE--ECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCG
T ss_pred             ccchhhhhhhhcCccceEEEecCCCCceEEEE--ECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCC
Confidence                        222333343 3566666665  322         1222488888999999999977754322      


Q ss_pred             -eecccCcEEEE----------------------------------EEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccc
Q 004214          323 -GTGHMGAVGAV----------------------------------AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP  367 (768)
Q Consensus       323 -~~~~~~~v~~~----------------------------------~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  367 (768)
                       +..|...|+++                                  +|+|+++ ++++|+.|++|++||+..+....   
T Consensus       396 ~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~-~laSgs~DgtVrlWd~~~g~~~~---  471 (902)
T 2oaj_A          396 NLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGT-AFITGHSNGSVRIYDASHGDIQD---  471 (902)
T ss_dssp             GGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEE-EEEEEETTSEEEEEESSCCTTTT---
T ss_pred             cccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCc-EEEEecCCCcEEEEECCCccccC---
Confidence             22333444444                                  4567644 89999999999999998663110   


Q ss_pred             cccceeeE-e-----eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc----------------------------
Q 004214          368 MNLKAKAV-V-----AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV----------------------------  413 (768)
Q Consensus       368 ~~~~~~~~-~-----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~----------------------------  413 (768)
                        ...... .     .+|...|.+++|+|++++||+|+.||+|++||+.+++                            
T Consensus       472 --~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (902)
T 2oaj_A          472 --NASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGV  549 (902)
T ss_dssp             --TBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCS
T ss_pred             --CceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccc
Confidence              000110 1     2788999999999999999999999999999997652                            


Q ss_pred             -----------------eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeE-----Eee-cCCCcEEEE
Q 004214          414 -----------------SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK-----TFE-GHTSSVLRA  470 (768)
Q Consensus       414 -----------------~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~-----~~~-~~~~~v~~~  470 (768)
                                       ++..+.+|..+|++++|||+| +||+|+.|++|+|||++++..+.     .+. +|...|+++
T Consensus       550 ~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv  628 (902)
T 2oaj_A          550 LVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCI  628 (902)
T ss_dssp             EEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEE
T ss_pred             cccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEE
Confidence                             367788999999999999999 99999999999999998877654     233 899999999


Q ss_pred             EEE-----eCC---CEEEEEeCCCcEEEEEC---CCCeEEEEeccC-----CCcEEEEE-Ec------------------
Q 004214          471 SFL-----TRG---AQIVSCGADGLVKLWTV---RTGECIATYDKH-----EDKIWALA-VG------------------  515 (768)
Q Consensus       471 ~~s-----~~~---~~l~s~~~dg~i~iwd~---~~~~~~~~~~~~-----~~~v~~l~-~s------------------  515 (768)
                      +|+     |||   ++|++|+.||+|++||+   .+|++...+.+|     .++|.+++ |+                  
T Consensus       629 ~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~  708 (902)
T 2oaj_A          629 EFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLS  708 (902)
T ss_dssp             EEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGG
T ss_pred             EEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccC
Confidence            999     885   89999999999999999   889988888776     47787776 65                  


Q ss_pred             ----CCCCEEEEEeCCCcEEEEEcCCH
Q 004214          516 ----KKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       516 ----~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                          +++..|+++  +..|+||++.++
T Consensus       709 ~~~~~~~~~l~~~--~~~ir~~~~~~~  733 (902)
T 2oaj_A          709 KGLCIPGIVLITG--FDDIRLITLGKS  733 (902)
T ss_dssp             GTCCCCEEEEEEC--SSEEEEECTTCC
T ss_pred             CCCCCCeEEEEEe--ccceEEEeCccc
Confidence                445444444  778999999874

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-50  Score=469.78  Aligned_cols=480  Identities=10%  Similarity=0.030  Sum_probs=369.9

Q ss_pred             EEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004214           25 YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR  104 (768)
Q Consensus        25 ~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~  104 (768)
                      ...||.+.|++++|+|++++  ||+|+.||+|+|||..+++.+..+. |..+|.+++|+| |++|++++.|+.|++||+.
T Consensus        12 ~~~gh~~~V~~lafspdg~~--lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~   87 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNL--LAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY   87 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTE--EEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred             cccCCCCCcEEEEECCCCCE--EEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence            34589999999999999987  9999999999999998888877665 788999999999 8899999999999999999


Q ss_pred             CCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeec-
Q 004214          105 DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS-  183 (768)
Q Consensus       105 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~-  183 (768)
                      +++++..+.....+.+++|+|++.                       ++++++.+|.|++||+.++.+........... 
T Consensus        88 ~~~~~~~~~~~~~V~~v~~sp~g~-----------------------~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~  144 (902)
T 2oaj_A           88 SQKVLTTVFVPGKITSIDTDASLD-----------------------WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSS  144 (902)
T ss_dssp             TCSEEEEEECSSCEEEEECCTTCS-----------------------EEEEEETTSCEEEEETTTTEEEEEEECCHHHHH
T ss_pred             CCcEEEEEcCCCCEEEEEECCCCC-----------------------EEEEEcCCCcEEEEECCCCccccceeccccccc
Confidence            999998888778899999999887                       89999999999999999885431111000000 


Q ss_pred             ccccCcccceeEEEEccCC-CceEEEEecCeEEEEeeccCcccceeeEEE------------eeecccCCceeEEEEecC
Q 004214          184 FEMDDSKRGFTAATVLPSN-QGLLCVTADQQLLLYTTVEVPEKKMELILS------------KRLVGYNEEILDLKFLGE  250 (768)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~~i~~~~~~~~  250 (768)
                      .....+...+..++|+|.+ ..+++++.||.+ +|++....... .+...            ....+|...|.+++|++ 
T Consensus       145 ~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-  221 (902)
T 2oaj_A          145 FFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQ-SFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-  221 (902)
T ss_dssp             TCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEE-EECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-
T ss_pred             cccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEE-EEecccCCcCCCcccccccccccCCCeEEEEEcC-
Confidence            1223455678999999964 677888899999 99987653210 00000            00123357899999986 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeeee--e---eC-------------CccceEEEeeeee--cCCCEEEEEEeCC----
Q 004214          251 EEQYLAVATNIEQVQVYDLSSMSCSYV--L---AG-------------HSEIVLCLDTCAL--SSGKILIVTGSKD----  306 (768)
Q Consensus       251 ~~~~l~~~~~~~~i~i~d~~~~~~~~~--~---~~-------------~~~~v~~l~~~~~--~~~~~~l~~~~~d----  306 (768)
                      ++.+|++++.|+.|++||+.+++++..  +   ..             |...|.+++|+..  +++..++++|+.+    
T Consensus       222 dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~  301 (902)
T 2oaj_A          222 NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGD  301 (902)
T ss_dssp             TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSS
T ss_pred             CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCC
Confidence            688999999999999999999887643  2   12             3457999985432  3344668888765    


Q ss_pred             -CeEEEEeCC------------------CceEEEeee-cccCcEEEEEEecC---------CCcEEEEEeCCCeEEEEeC
Q 004214          307 -NSVRLWDSE------------------SRCCVGVGT-GHMGAVGAVAFSKK---------LQNFLVSGSSDHTIKVWSF  357 (768)
Q Consensus       307 -g~i~iwd~~------------------~~~~~~~~~-~~~~~v~~~~~~~~---------~~~~l~s~~~dg~i~iwd~  357 (768)
                       +.+.+|++.                  +.+....+. .+.+.|..+.+.++         +...+++++.||.|++|++
T Consensus       302 ~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~  381 (902)
T 2oaj_A          302 NQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLY  381 (902)
T ss_dssp             CCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEET
T ss_pred             CceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEEC
Confidence             378899842                  122333333 46778888888662         2336888999999999998


Q ss_pred             CCCCCCCcc---cc-------c---------------------cceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 004214          358 DGLSDDAEQ---PM-------N---------------------LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV  406 (768)
Q Consensus       358 ~~~~~~~~~---~~-------~---------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  406 (768)
                      ..+......   ..       .                     ......+.+|...+.+++|+|++++|++|+.|++|++
T Consensus       382 ~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrl  461 (902)
T 2oaj_A          382 PSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRI  461 (902)
T ss_dssp             TTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEE
T ss_pred             CCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEE
Confidence            654211100   00       0                     0011123456666777888999999999999999999


Q ss_pred             EeCCCCceE----EEE--e-----ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC---------------------
Q 004214          407 WRLPDLVSV----VTF--R-----GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG---------------------  454 (768)
Q Consensus       407 ~d~~~~~~~----~~~--~-----~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~---------------------  454 (768)
                      ||+.++...    ...  .     +|...|++++|+|++++||+|+.||+|+|||+.++                     
T Consensus       462 Wd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~  541 (902)
T 2oaj_A          462 YDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRF  541 (902)
T ss_dssp             EESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSC
T ss_pred             EECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeec
Confidence            999876421    111  1     78899999999999999999999999999999766                     


Q ss_pred             ------------------------ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEE-----Eec-c
Q 004214          455 ------------------------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA-----TYD-K  504 (768)
Q Consensus       455 ------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~-~  504 (768)
                                              +++..+.+|.+.|++++|+|+| +||+|+.||+|++||++++..+.     .+. +
T Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~g  620 (902)
T 2oaj_A          542 SLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGA  620 (902)
T ss_dssp             CGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSS
T ss_pred             cccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccc
Confidence                                    2477888999999999999999 99999999999999998887764     232 7


Q ss_pred             CCCcEEEEEEc-----CCC---CEEEEEeCCCcEEEEEc
Q 004214          505 HEDKIWALAVG-----KKT---EMFATGGSDALVNLWHD  535 (768)
Q Consensus       505 ~~~~v~~l~~s-----~~~---~~l~s~~~dg~v~vw~~  535 (768)
                      |.+.|++++|+     |||   ++|++|+.||+|++|++
T Consensus       621 h~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          621 QSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             CCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             cccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence            89999999999     885   89999999999999998

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.8e-48  Score=439.71  Aligned_cols=446  Identities=17%  Similarity=0.163  Sum_probs=375.7

Q ss_pred             cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC----eeEEEecCccce-eEEEEEcC--CCCEEEEEeCCCeEEE
Q 004214           28 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK----KCVATLDKHFSR-VTSMAITS--DGSTLISAGRDKVVNL  100 (768)
Q Consensus        28 gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~----~~~~~l~~h~~~-V~~l~fs~--d~~~L~s~~~dg~i~v  100 (768)
                      .|.+.|++++|+|+|++  |++++ ++.|+|||+.++    +.+..+.+|... |++++|+|  ++++|++++.||.|++
T Consensus        16 ~~~~~v~~~~~spdg~~--l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v   92 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNA--IAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV   92 (615)
T ss_dssp             CCTTCCCCCEEETTTTE--EEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred             CccCceeEEEECCCCCE--EEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence            58999999999999987  88887 889999999999    899999999999 99999999  9999999999999999


Q ss_pred             EECCCC--------eeeeeee-cceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCC----cEEEEEEc
Q 004214          101 WDLRDY--------SCKLTVP-TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER----GIVRMWNA  167 (768)
Q Consensus       101 Wd~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~i~iwd~  167 (768)
                      ||+.++        +....+. +...+..++|+|++.                       .+++++.+    +.|++|+.
T Consensus        93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----------------------~l~~~~~~~~~~~~v~~~d~  149 (615)
T 1pgu_A           93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR-----------------------RLCVVGEGRDNFGVFISWDS  149 (615)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS-----------------------EEEEEECCSSCSEEEEETTT
T ss_pred             EeCCCCcccccccccccchhhcccccEEEEEEeCCCC-----------------------EEEEeccCCCCccEEEEEEC
Confidence            999855        5555555 455699999999886                       77888877    78999983


Q ss_pred             CCceeeeecCCceeecccccCcccceeEEEEccCCC-ceEEEEecCeEEEEeeccCcccceeeEEEeeecccCC---cee
Q 004214          168 DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQ-GLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE---EIL  243 (768)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~  243 (768)
                      ..  ...          ....+...+..+.|+|++. .+++++.|+.+.+|+....       .....+.+|..   .|.
T Consensus       150 ~~--~~~----------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-------~~~~~~~~~~~~~~~v~  210 (615)
T 1pgu_A          150 GN--SLG----------EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-------KFSASDRTHHKQGSFVR  210 (615)
T ss_dssp             CC--EEE----------ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-------EEEEEECSSSCTTCCEE
T ss_pred             CC--cce----------eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-------ceeeeecccCCCCceEE
Confidence            22  111          1223456788999999998 6889999999999997643       23445667888   899


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEECCCceeeeee-e---CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE
Q 004214          244 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL-A---GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC  319 (768)
Q Consensus       244 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~---~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  319 (768)
                      +++|++.++.++++++.++.|++||+.+++....+ .   .|...|.++.  +. ++. ++++++.||.|++||+.+++.
T Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~--~~-~~~-~l~~~~~d~~i~~wd~~~~~~  286 (615)
T 1pgu_A          211 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS--WL-DSQ-KFATVGADATIRVWDVTTSKC  286 (615)
T ss_dssp             EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEE--ES-SSS-EEEEEETTSEEEEEETTTTEE
T ss_pred             EEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEE--Ec-CCC-EEEEEcCCCcEEEEECCCCcE
Confidence            99999754899999999999999999999999888 6   8999999997  55 555 499999999999999999999


Q ss_pred             EEeeecc----cCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe-------------------
Q 004214          320 VGVGTGH----MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-------------------  376 (768)
Q Consensus       320 ~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-------------------  376 (768)
                      +..+..+    ...+.++.+. + ..++++++.||.|++||+....          ....+                   
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~-~-~~~l~~~~~~g~i~~~d~~~~~----------~~~~~~~~~~~v~~~~~~~l~~~~  354 (615)
T 1pgu_A          287 VQKWTLDKQQLGNQQVGVVAT-G-NGRIISLSLDGTLNFYELGHDE----------VLKTISGHNKGITALTVNPLISGS  354 (615)
T ss_dssp             EEEEECCTTCGGGCEEEEEEE-E-TTEEEEEETTSCEEEEETTEEE----------EEEEECCCSSCEEEEETTTTEEEE
T ss_pred             EEEEcCCCCcccCceeEEEeC-C-CCeEEEEECCCCEEEEECCCCc----------EEEEEeCCCCCEEEEEecCcEEEC
Confidence            9888876    4678888886 4 3489999999999999987421          11222                   


Q ss_pred             --------------eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC--------------------------------
Q 004214          377 --------------AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP--------------------------------  410 (768)
Q Consensus       377 --------------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~--------------------------------  410 (768)
                                    ..|...|.+++| +++..+++++.|+.+++|++.                                
T Consensus       355 ~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  433 (615)
T 1pgu_A          355 YDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQ  433 (615)
T ss_dssp             TTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEE
T ss_pred             CCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEe
Confidence                          345666777777 457788888888888888765                                


Q ss_pred             --CCceEEEEeccCCCeEEEEEccCCCEEEEeeC-CCcEEEEeCCCCcee-EEeecCCCcEEEEEEEeCCCEEEEEeCCC
Q 004214          411 --DLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCL-KTFEGHTSSVLRASFLTRGAQIVSCGADG  486 (768)
Q Consensus       411 --~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  486 (768)
                        +++.+..+. |...+++++|+  +++|++++. |+.|++||+.++... ..+.+|...|++++|+|+|++|++++.||
T Consensus       434 ~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  510 (615)
T 1pgu_A          434 SFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG  510 (615)
T ss_dssp             TTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCC
Confidence              334444444 77889999999  899999999 999999999888766 67788999999999999999999999999


Q ss_pred             cEEEEECCCCeEEEEecc-CCCcEEEEEEcC----------CCCEEEEEeCCCcEEEEEcCCH
Q 004214          487 LVKLWTVRTGECIATYDK-HEDKIWALAVGK----------KTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       487 ~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~----------~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      .|++||+.+++++..+.+ |...|++++|+|          ++++|++++.||.|++|++.++
T Consensus       511 ~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  573 (615)
T 1pgu_A          511 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP  573 (615)
T ss_dssp             CEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred             eEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence            999999999999999988 999999999999          9999999999999999999875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.4e-46  Score=433.76  Aligned_cols=452  Identities=13%  Similarity=0.170  Sum_probs=376.4

Q ss_pred             EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004214           22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW  101 (768)
Q Consensus        22 ~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vW  101 (768)
                      ..+.+.+|.+.|++++|+|++++  ||+|+.||.|+|||+.+++.+..+.+|.++|++++|+|++++|++++.||.|++|
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~~--la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw   82 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEPW--VLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSE--EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             cceeeecCCCceEEEEECCCCCE--EEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            46789999999999999999987  9999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCeeeeeee-cceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCc-eeeeecCCc
Q 004214          102 DLRDYSCKLTVP-TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSD  179 (768)
Q Consensus       102 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~-~~~~~~~~~  179 (768)
                      |+.+++.+..+. +...+.+++|+|++.                       .+++++.+|.|++|++.++ .....    
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----------------------~l~~~~~dg~i~vw~~~~~~~~~~~----  135 (814)
T 3mkq_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKP-----------------------YVLSGSDDLTVKLWNWENNWALEQT----  135 (814)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSS-----------------------EEEEEETTSEEEEEEGGGTSEEEEE----
T ss_pred             ECCCCcEEEEEecCCCCEEEEEEeCCCC-----------------------EEEEEcCCCEEEEEECCCCceEEEE----
Confidence            999999988887 445699999999886                       8899999999999999876 22211    


Q ss_pred             eeecccccCcccceeEEEEcc-CCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec-CCCCEEEE
Q 004214          180 VTISFEMDDSKRGFTAATVLP-SNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG-EEEQYLAV  257 (768)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~  257 (768)
                            ...+...+..+.++| ++..+++++.||.+.+|+.......      ......+...+..++|++ +++.++++
T Consensus       136 ------~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~l~~  203 (814)
T 3mkq_A          136 ------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN------FTLTTGQERGVNYVDYYPLPDKPYMIT  203 (814)
T ss_dssp             ------EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS------EEEECCCTTCCCEEEECCSTTCCEEEE
T ss_pred             ------EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce------eEEecCCCCCEEEEEEEECCCCCEEEE
Confidence                  112345688899999 7788999999999999998654321      112234457899999986 37789999


Q ss_pred             EeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEec
Q 004214          258 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK  337 (768)
Q Consensus       258 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  337 (768)
                      ++.+|.|++||..++.....+.+|...|.++.  +.+++.. +++++.||.|++||+.+++....+..|...+.+++|+|
T Consensus       204 ~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~  280 (814)
T 3mkq_A          204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV--FHPTLPI-IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP  280 (814)
T ss_dssp             ECTTSEEEEEETTTTEEEEEEECCSSCEEEEE--ECSSSSE-EEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECT
T ss_pred             EeCCCEEEEEECCCCcEEEEEcCCCCCEEEEE--EcCCCCE-EEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEcc
Confidence            99999999999999999999999999999997  7777765 99999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCCCCCccccc---------------------------------cceeeEeeccCCCeE
Q 004214          338 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN---------------------------------LKAKAVVAAHGKDIN  384 (768)
Q Consensus       338 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~i~  384 (768)
                      ++..++++++.++.+.+|++............                                 .........+...+.
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (814)
T 3mkq_A          281 TGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQ  360 (814)
T ss_dssp             TCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCS
T ss_pred             CCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCc
Confidence            98765566666778889987653211100000                                 001112234556789


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC
Q 004214          385 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT  464 (768)
Q Consensus       385 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~  464 (768)
                      +++|+|+|+++++++ ++.+.+|++......     +.+.+.+++|+|+++++++++.+|.|++|+.        +.+|.
T Consensus       361 ~~~~spdg~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~  426 (814)
T 3mkq_A          361 SLAHSPNGRFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVT  426 (814)
T ss_dssp             EEEECTTSSEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECT
T ss_pred             eeEECCCCCEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCcc
Confidence            999999999999998 899999998755432     3457889999999999999999999999963        45688


Q ss_pred             CcEEEEEEEeCC---CEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE------eCCCcEEEEE
Q 004214          465 SSVLRASFLTRG---AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG------GSDALVNLWH  534 (768)
Q Consensus       465 ~~v~~~~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~------~~dg~v~vw~  534 (768)
                      ..+.++.|+|+|   .+|++++.||.|++||+.+++++..+..|..   .+.|+|+|++|+++      +.++.+.+|.
T Consensus       427 ~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~  502 (814)
T 3mkq_A          427 SWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLF  502 (814)
T ss_dssp             TCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred             ceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence            889999999998   6889999999999999999999999987764   89999999999999      6655555554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=7.7e-44  Score=415.60  Aligned_cols=467  Identities=12%  Similarity=0.133  Sum_probs=375.7

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA   81 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~   81 (768)
                      +||+|+.||.|+|||+.++..+..+.+|.+.|++++|+|++++  |++|+.||.|+|||+.+++.+..+.+|.+.|++++
T Consensus        27 ~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~  104 (814)
T 3mkq_A           27 WVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNW--IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA  104 (814)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTE--EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCE--EEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEE
Confidence            6899999999999999999999999999999999999999887  99999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCC-eeeeeeec-ceeEeeEEecC-CCCCccccccccchhhhhcccCCcceEEEEeeC
Q 004214           82 ITSDGSTLISAGRDKVVNLWDLRDY-SCKLTVPT-YEMVEAVCAIP-PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE  158 (768)
Q Consensus        82 fs~d~~~L~s~~~dg~i~vWd~~~~-~~~~~~~~-~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (768)
                      |+|++++|++++.||.|++||+.++ .....+.. ...+.+++|+| ++.                       .+++++.
T Consensus       105 ~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-----------------------~l~~~~~  161 (814)
T 3mkq_A          105 VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS-----------------------TFASGCL  161 (814)
T ss_dssp             ECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE-----------------------EEEEEET
T ss_pred             EeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC-----------------------EEEEEeC
Confidence            9999999999999999999999987 55555553 45688999998 443                       8999999


Q ss_pred             CcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEcc--CCCceEEEEecCeEEEEeeccCcccceeeEEEeeec
Q 004214          159 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLP--SNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV  236 (768)
Q Consensus       159 ~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~  236 (768)
                      +|.|++||+.++.......         ......+..+.++|  ++..+++++.+|.+.+|+.....       ....+.
T Consensus       162 dg~v~vwd~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-------~~~~~~  225 (814)
T 3mkq_A          162 DRTVKVWSLGQSTPNFTLT---------TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-------CVATLE  225 (814)
T ss_dssp             TSEEEEEETTCSSCSEEEE---------CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-------EEEEEE
T ss_pred             CCeEEEEECCCCcceeEEe---------cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-------EEEEEc
Confidence            9999999997763221111         11225677888888  88889999999999999987542       344556


Q ss_pred             ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC
Q 004214          237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES  316 (768)
Q Consensus       237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~  316 (768)
                      +|...|.+++|++ +++++++++.+|.|++||+.++.....+..|...+.+++  +.+++..++++++.++.+.+|++..
T Consensus       226 ~~~~~v~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  302 (814)
T 3mkq_A          226 GHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA--THPTGRKNYIASGFDNGFTVLSLGN  302 (814)
T ss_dssp             CCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEE--ECTTCGGGEEEEEETTEEEEEECSC
T ss_pred             CCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEE--EccCCCceEEEEEeCCCEEEEEcCC
Confidence            7889999999985 677999999999999999999999999999999999998  7788775445555577788888654


Q ss_pred             ce----------EEE---------------------------------eeecccCcEEEEEEecCCCcEEEEEeCCCeEE
Q 004214          317 RC----------CVG---------------------------------VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIK  353 (768)
Q Consensus       317 ~~----------~~~---------------------------------~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~  353 (768)
                      ..          .+.                                 ....+...+.+++|+|++. ++++++ ++.+.
T Consensus       303 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~la~~~-~~~~~  380 (814)
T 3mkq_A          303 DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGR-FVTVVG-DGEYV  380 (814)
T ss_dssp             CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSS-EEEEEE-TTEEE
T ss_pred             CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCC-EEEEec-CCEEE
Confidence            22          111                                 1123445678999999977 677777 89999


Q ss_pred             EEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccC
Q 004214          354 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV  433 (768)
Q Consensus       354 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~  433 (768)
                      +|++...          .     ..+...+.+++|+|+++++++++.+|.|++|+.        +.+|...+.+++|+|+
T Consensus       381 i~~~~~~----------~-----~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~s~d  437 (814)
T 3mkq_A          381 IYTALAW----------R-----NKAFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHSAID  437 (814)
T ss_dssp             EEETTTT----------E-----EEEEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSSCCC
T ss_pred             EEECccc----------c-----ccCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCcCcc
Confidence            9997522          0     123456889999999999999999999999963        4568888999999999


Q ss_pred             C---CEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEE------eCCCcEEEEE------------
Q 004214          434 D---QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSC------GADGLVKLWT------------  492 (768)
Q Consensus       434 ~---~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~------~~dg~i~iwd------------  492 (768)
                      +   ..|++++.|+.|++||+.+++++..+..|..   .+.|+|+|++|+++      +.++.+.+|-            
T Consensus       438 g~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (814)
T 3mkq_A          438 RLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNG  514 (814)
T ss_dssp             EEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHT
T ss_pred             ceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhcc
Confidence            8   6888999999999999999999999987765   89999999999999      5555444432            


Q ss_pred             -----------------------------------CCCCe-------EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 004214          493 -----------------------------------VRTGE-------CIATYDKHEDKIWALAVGKKTEMFATGGSDALV  530 (768)
Q Consensus       493 -----------------------------------~~~~~-------~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v  530 (768)
                                                         ...+.       ....+.....++..+.|.+++..++....++.+
T Consensus       515 ~~~~~~~~~~~~~~~~~~~~~i~s~~w~~~~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  594 (814)
T 3mkq_A          515 NIDDSEGVDEAFDVLYELSESITSGKWVGDVFIFTTATNRLNYFVGGKTYNLAHYTKEMYLLGYLARDNKVYLADREVHV  594 (814)
T ss_dssp             CCBTTTBCTTTEEEEEEECSCCSEEEEETTEEEEECTTSEEEEEETTEEEEEEECSSCCEEEEEEGGGTEEEEECTTCCE
T ss_pred             CCccccchhhheeeeeEeccEEEeeEEeCCEEEEEcCCCeEEEEeCCeeEEEEECCccEEEEEEEecCCEEEEEcCCCCE
Confidence                                               10000       001111233455556677888899999999999


Q ss_pred             EEEEcCCHHH
Q 004214          531 NLWHDSTAAE  540 (768)
Q Consensus       531 ~vw~~~~~~~  540 (768)
                      ..|.+.....
T Consensus       595 ~~~~l~~~~~  604 (814)
T 3mkq_A          595 YGYEISLEVL  604 (814)
T ss_dssp             EEEECCHHHH
T ss_pred             EEEEECcHHH
Confidence            9999876543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=6.2e-44  Score=379.18  Aligned_cols=290  Identities=27%  Similarity=0.547  Sum_probs=263.2

Q ss_pred             EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214           23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD  102 (768)
Q Consensus        23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd  102 (768)
                      ...+.||.+.|++++|+|++..  +++|+.||+|+|||+.+++....+.+|...|++++|+|++++|++++.|++|++||
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~--l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSV--MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD  178 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSE--EEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             eEeecccCCcEEEEEEcCCCCE--EEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence            4578899999999999999877  99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214          103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI  182 (768)
Q Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~  182 (768)
                      +.+++++                                                                         
T Consensus       179 ~~~~~~~-------------------------------------------------------------------------  185 (410)
T 1vyh_C          179 FQGFECI-------------------------------------------------------------------------  185 (410)
T ss_dssp             TTSSCEE-------------------------------------------------------------------------
T ss_pred             CCCCcee-------------------------------------------------------------------------
Confidence            8654321                                                                         


Q ss_pred             cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214          183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE  262 (768)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~  262 (768)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (410)
T 1vyh_C          186 --------------------------------------------------------------------------------  185 (410)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcE
Q 004214          263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF  342 (768)
Q Consensus       263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  342 (768)
                                   ..+.+|...|.++.  +.+++.. +++|+.|+.|++||+.++.++..+.+|...|.++.++|++. +
T Consensus       186 -------------~~~~~h~~~V~~v~--~~p~~~~-l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~-~  248 (410)
T 1vyh_C          186 -------------RTMHGHDHNVSSVS--IMPNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT-L  248 (410)
T ss_dssp             -------------ECCCCCSSCEEEEE--ECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS-E
T ss_pred             -------------EEEcCCCCCEEEEE--EeCCCCE-EEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC-E
Confidence                         13345666777776  6666665 99999999999999999999999999999999999999966 8


Q ss_pred             EEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC--------------------CCEEEEEeCCC
Q 004214          343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--------------------DSLVCTGSQDR  402 (768)
Q Consensus       343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--------------------~~~l~~~~~dg  402 (768)
                      +++|+.|++|++||+...          .....+..|...|.+++|+|+                    +.+|++|+.|+
T Consensus       249 l~s~s~D~~v~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~  318 (410)
T 1vyh_C          249 IASCSNDQTVRVWVVATK----------ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK  318 (410)
T ss_dssp             EEEEETTSCEEEEETTTC----------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred             EEEEcCCCeEEEEECCCC----------ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence            999999999999999743          355567789999999999996                    67899999999


Q ss_pred             cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEE
Q 004214          403 TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSC  482 (768)
Q Consensus       403 ~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  482 (768)
                      +|++||+.++..+..+.+|...|++++|+|++++|++|+.||+|++||+.+++++.++.+|...|++++|+|++.+|++|
T Consensus       319 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg  398 (410)
T 1vyh_C          319 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG  398 (410)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEE
T ss_pred             eEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEECC
Q 004214          483 GADGLVKLWTVR  494 (768)
Q Consensus       483 ~~dg~i~iwd~~  494 (768)
                      +.||+|++|+++
T Consensus       399 s~D~~i~vW~~r  410 (410)
T 1vyh_C          399 SVDQTVKVWECR  410 (410)
T ss_dssp             ETTSEEEEEC--
T ss_pred             eCCCcEEEEeCC
Confidence            999999999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.8e-43  Score=360.50  Aligned_cols=291  Identities=24%  Similarity=0.383  Sum_probs=266.8

Q ss_pred             EeeecccCCceeEEEEecC---CCCEEEEEeCCCcEEEEECCCcee--eeeeeCCccceEEEeeeeecCCCEEEEEEeCC
Q 004214          232 SKRLVGYNEEILDLKFLGE---EEQYLAVATNIEQVQVYDLSSMSC--SYVLAGHSEIVLCLDTCALSSGKILIVTGSKD  306 (768)
Q Consensus       232 ~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d  306 (768)
                      .+...+|.+.|.+++|++.   ++.+|++|+.|+.|++|++..+..  ...+.+|...|.+++  +.+++.. +++++.|
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~--~~~~~~~-l~s~s~D  101 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVD--ISHTLPI-AASSSLD  101 (321)
T ss_dssp             EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE--ECSSSSE-EEEEETT
T ss_pred             eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEE--ECCCCCE-EEEEeCC
Confidence            3566789999999999864   567999999999999999887654  446899999999997  6666665 9999999


Q ss_pred             CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEE
Q 004214          307 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL  386 (768)
Q Consensus       307 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  386 (768)
                      +.|++||+.+++.+..+..|...+.+++|+|+++ ++++++.||.|++|++...          ........|...|.++
T Consensus       102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~----------~~~~~~~~~~~~v~~~  170 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESG----------KKEYSLDTRGKFILSI  170 (321)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTC----------SEEEEEECSSSCEEEE
T ss_pred             CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCC----------ceeEEecCCCceEEEE
Confidence            9999999999999999999999999999999976 8999999999999999743          2445566788899999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCc
Q 004214          387 AVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS  466 (768)
Q Consensus       387 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~  466 (768)
                      +|+|++++|++|+.||.|++||+.+++.+..+.+|..+|++++|+|++++|++|+.|++|++||++++.++..+.+|...
T Consensus       171 ~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~  250 (321)
T 3ow8_A          171 AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASW  250 (321)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          467 VLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       467 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      |++++|+|++++|++++.||+|++||+.+++++.++.+|...|++++|+|++.+|++++.||.|++|+..
T Consensus       251 v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          251 VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999963

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.9e-43  Score=362.08  Aligned_cols=294  Identities=24%  Similarity=0.412  Sum_probs=260.6

Q ss_pred             CEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEE
Q 004214           20 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN   99 (768)
Q Consensus        20 ~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~   99 (768)
                      ......+.||.+.|++++|+|++++  |++|+.||+|+|||+.+++.+..+..|...|.+++|+|++++|++++.|+.|+
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~--l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~  122 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRL--LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS  122 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSE--EEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             chhheeecCCCCceEEEEECCCCCE--EEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence            4567889999999999999999887  99999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCc
Q 004214          100 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD  179 (768)
Q Consensus       100 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~  179 (768)
                      +|++.+....                                                                      
T Consensus       123 iw~~~~~~~~----------------------------------------------------------------------  132 (340)
T 1got_B          123 IYNLKTREGN----------------------------------------------------------------------  132 (340)
T ss_dssp             EEETTTCSBS----------------------------------------------------------------------
T ss_pred             EEECccCCCc----------------------------------------------------------------------
Confidence            9998653100                                                                      


Q ss_pred             eeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEe
Q 004214          180 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT  259 (768)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  259 (768)
                                                                                                      
T Consensus       133 --------------------------------------------------------------------------------  132 (340)
T 1got_B          133 --------------------------------------------------------------------------------  132 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCC
Q 004214          260 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL  339 (768)
Q Consensus       260 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  339 (768)
                                  ......+.+|...+.++.  +.++ +. +++++.||.|++||+.+++.+..+.+|.+.|.+++|+|++
T Consensus       133 ------------~~~~~~~~~h~~~v~~~~--~~~~-~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~  196 (340)
T 1got_B          133 ------------VRVSRELAGHTGYLSCCR--FLDD-NQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             ------------CEEEEEEECCSSCEEEEE--EEET-TE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             ------------ceeEEEecCCCccEEEEE--ECCC-Cc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC
Confidence                        001113445677777775  4443 44 8999999999999999999999999999999999999996


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 004214          340 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR  419 (768)
Q Consensus       340 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  419 (768)
                      . ++++|+.||+|++||+...          .....+..|...|++++|+|++++|++|+.||+|++||+++++.+..+.
T Consensus       197 ~-~l~sg~~d~~v~~wd~~~~----------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  265 (340)
T 1got_B          197 R-LFVSGACDASAKLWDVREG----------MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS  265 (340)
T ss_dssp             S-EEEEEETTSCEEEEETTTC----------SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             C-EEEEEeCCCcEEEEECCCC----------eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence            6 8999999999999999743          3556677899999999999999999999999999999999988877765


Q ss_pred             c--cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214          420 G--HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT  492 (768)
Q Consensus       420 ~--~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  492 (768)
                      .  +...|++++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|++++|+|+|.+|++|+.||.|+|||
T Consensus       266 ~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            3  334799999999999999999999999999999999999999999999999999999999999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.5e-44  Score=377.38  Aligned_cols=317  Identities=21%  Similarity=0.381  Sum_probs=271.6

Q ss_pred             CCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCE
Q 004214            9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGST   88 (768)
Q Consensus         9 dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~   88 (768)
                      +..+..|+.....+.+.|.||.+.|++++|+|++++  |++|+.||+|+|||+.+++.+..+.+|...|.+++|+|+|++
T Consensus        45 ~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~--l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~  122 (380)
T 3iz6_a           45 GRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNW--IVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQS  122 (380)
T ss_dssp             GGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSC--EEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSE
T ss_pred             cccccccccceeEEeecccccccEEEEEEEcCCCCE--EEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCE
Confidence            345667889999999999999999999999999988  999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcC
Q 004214           89 LISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNAD  168 (768)
Q Consensus        89 L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~  168 (768)
                      |++++.|+.+++||+.+....                .+                                         
T Consensus       123 las~~~d~~v~iw~~~~~~~~----------------~~-----------------------------------------  145 (380)
T 3iz6_a          123 VACGGLDSACSIFNLSSQADR----------------DG-----------------------------------------  145 (380)
T ss_dssp             EEECCSSSCCEEEECCCCSSC----------------CC-----------------------------------------
T ss_pred             EEEeeCCCcEEEEECCCCccc----------------cC-----------------------------------------
Confidence            999999999999998653100                00                                         


Q ss_pred             CceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEe
Q 004214          169 SACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFL  248 (768)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  248 (768)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (380)
T 3iz6_a          146 --------------------------------------------------------------------------------  145 (380)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee-----
Q 004214          249 GEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG-----  323 (768)
Q Consensus       249 ~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----  323 (768)
                                            .......+.+|...+.++.  +.+++...|++|+.|++|++||+.+++.+..+     
T Consensus       146 ----------------------~~~~~~~~~gh~~~v~~~~--~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~  201 (380)
T 3iz6_a          146 ----------------------NMPVSRVLTGHKGYASSCQ--YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP  201 (380)
T ss_dssp             ----------------------SSTTCCBCCCCSSCCCCCB--CCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS
T ss_pred             ----------------------CccceeeccCCCcceEEEE--EecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC
Confidence                                  0001113455666666665  55655545889999999999999988887766     


Q ss_pred             ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCc
Q 004214          324 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT  403 (768)
Q Consensus       324 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  403 (768)
                      .+|...|.++++++....++++|+.|++|++||++..         ......+.+|...|++++|+|++++|++|+.||+
T Consensus       202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~---------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~  272 (380)
T 3iz6_a          202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT---------SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT  272 (380)
T ss_dssp             SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT---------CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC
T ss_pred             CCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC---------CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe
Confidence            6799999999998855669999999999999999732         1245566789999999999999999999999999


Q ss_pred             EEEEeCCCCceEEEEeccCC-------CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe----ecCCCcEEEEEE
Q 004214          404 ACVWRLPDLVSVVTFRGHKR-------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF----EGHTSSVLRASF  472 (768)
Q Consensus       404 i~i~d~~~~~~~~~~~~~~~-------~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~~~~v~~~~~  472 (768)
                      |++||++++..+..+..+..       .|++++|+|+|++|++|+.||.|++||+..++.+..+    .+|.+.|++++|
T Consensus       273 i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~  352 (380)
T 3iz6_a          273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL  352 (380)
T ss_dssp             EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE
T ss_pred             EEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEE
Confidence            99999999998888765432       4899999999999999999999999999999988887    689999999999


Q ss_pred             EeCCCEEEEEeCCCcEEEEECCCCe
Q 004214          473 LTRGAQIVSCGADGLVKLWTVRTGE  497 (768)
Q Consensus       473 s~~~~~l~s~~~dg~i~iwd~~~~~  497 (768)
                      +|+|++|++|+.||+|++|++...+
T Consensus       353 s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          353 SSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             CSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             CCCCCEEEEeeCCCCEEEEecCCCc
Confidence            9999999999999999999987653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.1e-43  Score=373.81  Aligned_cols=288  Identities=26%  Similarity=0.448  Sum_probs=270.4

Q ss_pred             eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEE
Q 004214          233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW  312 (768)
Q Consensus       233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iw  312 (768)
                      ..+.+|..+|.+++|+| ++.++++|+.||.|++||+.+++....+.+|...|.+++  +.+++.. |++|+.||+|++|
T Consensus       102 ~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~--~~~~~~~-l~sgs~D~~i~iw  177 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS--FDHSGKL-LASCSADMTIKLW  177 (410)
T ss_dssp             CEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEE--ECTTSSE-EEEEETTSCCCEE
T ss_pred             EeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEE--EcCCCCE-EEEEeCCCeEEEE
Confidence            34668999999999986 678999999999999999999999999999999999997  6676665 9999999999999


Q ss_pred             eCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214          313 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND  392 (768)
Q Consensus       313 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  392 (768)
                      |+.+++++..+.+|...|.+++|+|++. ++++|+.|++|++||+..+          .....+.+|...|.+++++|++
T Consensus       178 d~~~~~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~----------~~~~~~~~h~~~v~~~~~~~~g  246 (410)
T 1vyh_C          178 DFQGFECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTG----------YCVKTFTGHREWVRMVRPNQDG  246 (410)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTC----------CEEEEEECCSSCEEEEEECTTS
T ss_pred             eCCCCceeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCC----------cEEEEEeCCCccEEEEEECCCC
Confidence            9999999999999999999999999966 8999999999999999843          3556678899999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccC--------------------CCEEEEeeCCCcEEEEeCC
Q 004214          393 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV--------------------DQVVITASGDKTIKIWSIS  452 (768)
Q Consensus       393 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~--------------------~~~l~t~~~d~~i~iwd~~  452 (768)
                      .++++|+.|++|++||+.+++....+.+|...|.+++|+|+                    +.+|++|+.|++|++||+.
T Consensus       247 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~  326 (410)
T 1vyh_C          247 TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS  326 (410)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred             CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence            99999999999999999999999999999999999999996                    6799999999999999999


Q ss_pred             CCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 004214          453 DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL  532 (768)
Q Consensus       453 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~v  532 (768)
                      ++.++..+.+|...|++++|+|+|++|++|+.||.|++||+.+++++.++.+|...|++++|+|++.+|++|+.||.|++
T Consensus       327 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~v  406 (410)
T 1vyh_C          327 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV  406 (410)
T ss_dssp             TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEc
Q 004214          533 WHD  535 (768)
Q Consensus       533 w~~  535 (768)
                      |+.
T Consensus       407 W~~  409 (410)
T 1vyh_C          407 WEC  409 (410)
T ss_dssp             EC-
T ss_pred             EeC
Confidence            985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.7e-42  Score=354.71  Aligned_cols=295  Identities=22%  Similarity=0.345  Sum_probs=256.3

Q ss_pred             CEEEEEEEcCCCcEEEEEEeeCCC--ccEEEEEeCCCcEEEEECCCCee--EEEecCccceeEEEEEcCCCCEEEEEeCC
Q 004214           20 GFCTHYFKGHKGVVSSILFHPDTD--KSLLFSGSDDATVRVWDLLAKKC--VATLDKHFSRVTSMAITSDGSTLISAGRD   95 (768)
Q Consensus        20 ~~~~~~l~gh~~~V~~l~~spd~~--~~~l~sg~~dg~I~iWd~~~~~~--~~~l~~h~~~V~~l~fs~d~~~L~s~~~d   95 (768)
                      +.....+.+|.+.|++++|+|++.  ..+|+||+.|++|+|||+.+++.  ...+.+|...|.+++|+|++.++++++.|
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D  101 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD  101 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence            344566779999999999998632  23599999999999999987754  45789999999999999999999999999


Q ss_pred             CeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeee
Q 004214           96 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ  175 (768)
Q Consensus        96 g~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~  175 (768)
                      ++|++||+.+++++..+.                                                              
T Consensus       102 ~~i~lWd~~~~~~~~~~~--------------------------------------------------------------  119 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKSID--------------------------------------------------------------  119 (321)
T ss_dssp             SEEEEEETTTTEEEEEEE--------------------------------------------------------------
T ss_pred             CcEEEEECCCCCEEEEEe--------------------------------------------------------------
Confidence            999999998765432221                                                              


Q ss_pred             cCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEE
Q 004214          176 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL  255 (768)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  255 (768)
                                                                                                      
T Consensus       120 --------------------------------------------------------------------------------  119 (321)
T 3ow8_A          120 --------------------------------------------------------------------------------  119 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEE
Q 004214          256 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF  335 (768)
Q Consensus       256 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  335 (768)
                                              .|...+.+++  +.+++.. |++|+.||.|++|++.++.....+..|...|.+++|
T Consensus       120 ------------------------~~~~~~~~~~--~spdg~~-l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~  172 (321)
T 3ow8_A          120 ------------------------AGPVDAWTLA--FSPDSQY-LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY  172 (321)
T ss_dssp             ------------------------CCTTCCCCEE--ECTTSSE-EEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEE
T ss_pred             ------------------------CCCccEEEEE--ECCCCCE-EEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEE
Confidence                                    1122223333  5566665 999999999999999999999999999999999999


Q ss_pred             ecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceE
Q 004214          336 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV  415 (768)
Q Consensus       336 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~  415 (768)
                      +|+++ +|++|+.||.|++||+..+          .....+..|..+|++++|+|++++|++|+.||.|++||+++++..
T Consensus       173 spdg~-~lasg~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~  241 (321)
T 3ow8_A          173 SPDGK-YLASGAIDGIINIFDIATG----------KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA  241 (321)
T ss_dssp             CTTSS-EEEEEETTSCEEEEETTTT----------EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE
T ss_pred             CCCCC-EEEEEcCCCeEEEEECCCC----------cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee
Confidence            99976 8999999999999999743          355667789999999999999999999999999999999999999


Q ss_pred             EEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214          416 VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR  494 (768)
Q Consensus       416 ~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  494 (768)
                      ..+.+|...|.+++|+|++++|++++.|++|++||+.+++++.++.+|...|.+++|+|++++|++++.||.|++||..
T Consensus       242 ~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          242 GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999963

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-42  Score=372.98  Aligned_cols=342  Identities=18%  Similarity=0.198  Sum_probs=285.8

Q ss_pred             CcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCC-ccEEEEEeCCCcEEEEEC----CCCe------eEEEecC------
Q 004214           10 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTD-KSLLFSGSDDATVRVWDL----LAKK------CVATLDK------   72 (768)
Q Consensus        10 g~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~-~~~l~sg~~dg~I~iWd~----~~~~------~~~~l~~------   72 (768)
                      ..+.+|++...........|.+.|++++|+|+++ +  ||+|+.||.|++||+    .+++      ....+..      
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (425)
T 1r5m_A           25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESI--LAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA  102 (425)
T ss_dssp             ---------CCCEECEEEEECSCCSEEEECSSCTTE--EEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-
T ss_pred             cccccccchhhhhheeeeeccCceEEEEECCCCCcE--EEEecCCceEEEEEEecccCCccccccccccccccccccccc
Confidence            3466888877766666667889999999999988 6  999999999999999    8888      4555554      


Q ss_pred             ----ccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCC
Q 004214           73 ----HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRS  148 (768)
Q Consensus        73 ----h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (768)
                          |.+.|++++|+|++++|++++.||.|++||. +++.                                        
T Consensus       103 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~~----------------------------------------  141 (425)
T 1r5m_A          103 SSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGAL----------------------------------------  141 (425)
T ss_dssp             -----CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSCE----------------------------------------
T ss_pred             cccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCe----------------------------------------
Confidence                6779999999999999999999999999983 2211                                        


Q ss_pred             cceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCccccee
Q 004214          149 LEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKME  228 (768)
Q Consensus       149 ~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~  228 (768)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (425)
T 1r5m_A          142 --------------------------------------------------------------------------------  141 (425)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214          229 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS  308 (768)
Q Consensus       229 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~  308 (768)
                                                                    ...+.+|...|.++.  +.+++.. |++++.||.
T Consensus       142 ----------------------------------------------~~~~~~~~~~v~~~~--~~~~~~~-l~~~~~d~~  172 (425)
T 1r5m_A          142 ----------------------------------------------LNVLNFHRAPIVSVK--WNKDGTH-IISMDVENV  172 (425)
T ss_dssp             ----------------------------------------------EEEECCCCSCEEEEE--ECTTSSE-EEEEETTCC
T ss_pred             ----------------------------------------------eeeccCCCccEEEEE--ECCCCCE-EEEEecCCe
Confidence                                                          112334566677775  5566655 888999999


Q ss_pred             EEEEeCCCceEEEeeecccCc---------------EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccccee
Q 004214          309 VRLWDSESRCCVGVGTGHMGA---------------VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK  373 (768)
Q Consensus       309 i~iwd~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  373 (768)
                      |++||+.+++.+..+..+...               +.+++|+|++  .+++++.+|.|++||+...          ...
T Consensus       173 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~----------~~~  240 (425)
T 1r5m_A          173 TILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEK----------TPT  240 (425)
T ss_dssp             EEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCS----------SCS
T ss_pred             EEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCC----------cee
Confidence            999999999888888877776               8999999974  5899999999999999853          244


Q ss_pred             eEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 004214          374 AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD  453 (768)
Q Consensus       374 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~  453 (768)
                      .....|...|.+++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++ ++++++.|+.|++||+.+
T Consensus       241 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~  319 (425)
T 1r5m_A          241 GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ  319 (425)
T ss_dssp             EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT
T ss_pred             eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC
Confidence            4556789999999999999999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             CceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe--------------------EEEEeccCCC--cEEE
Q 004214          454 GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE--------------------CIATYDKHED--KIWA  511 (768)
Q Consensus       454 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~--~v~~  511 (768)
                      ++++..+..|...|.+++|+|++++|++++.||.|++||+.+++                    ++..+..|..  .|++
T Consensus       320 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  399 (425)
T 1r5m_A          320 NTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFD  399 (425)
T ss_dssp             TEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEE
T ss_pred             CcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEE
Confidence            99999999999999999999999999999999999999999988                    8999999977  9999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          512 LAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       512 l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      ++|+|++++|++++.||.|++|++.
T Consensus       400 ~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          400 LSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEECTTSSEEEEEESSSCCEEEECC
T ss_pred             EEccCCCceEEEEecCceEEEEeec
Confidence            9999999999999999999999975

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=8.1e-42  Score=347.50  Aligned_cols=293  Identities=21%  Similarity=0.309  Sum_probs=255.5

Q ss_pred             EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004214           22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW  101 (768)
Q Consensus        22 ~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vW  101 (768)
                      ..++|.+|.+.|++++|+|+++.  |++|+.||+|++||+.++..+..+..|..+|.+++|+|++++|++++.|+.|++|
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~--l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPW--VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSE--EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             eEEeecCCCCceEEEEECCCCCE--EEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence            45789999999999999999987  9999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCcee
Q 004214          102 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT  181 (768)
Q Consensus       102 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~  181 (768)
                      |+.+++++                                                                        
T Consensus        83 d~~~~~~~------------------------------------------------------------------------   90 (304)
T 2ynn_A           83 NYNTGEKV------------------------------------------------------------------------   90 (304)
T ss_dssp             ETTTCCEE------------------------------------------------------------------------
T ss_pred             ECCCCcEE------------------------------------------------------------------------
Confidence            98764321                                                                        


Q ss_pred             ecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCC
Q 004214          182 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI  261 (768)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~  261 (768)
                                                                                                      
T Consensus        91 --------------------------------------------------------------------------------   90 (304)
T 2ynn_A           91 --------------------------------------------------------------------------------   90 (304)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc-eEEEeeecccCcEEEEEEecCCC
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVGTGHMGAVGAVAFSKKLQ  340 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~  340 (768)
                                    ..+.+|...|.+++  +.+++.. +++|+.||+|++||+.++ .....+.+|...|.+++|+|.+.
T Consensus        91 --------------~~~~~h~~~v~~~~--~~~~~~~-l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~  153 (304)
T 2ynn_A           91 --------------VDFEAHPDYIRSIA--VHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP  153 (304)
T ss_dssp             --------------EEEECCSSCEEEEE--ECSSSSE-EEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCT
T ss_pred             --------------EEEeCCCCcEEEEE--EcCCCCE-EEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCC
Confidence                          13445667777776  6666665 999999999999999877 56677889999999999999666


Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 004214          341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP--NDSLVCTGSQDRTACVWRLPDLVSVVTF  418 (768)
Q Consensus       341 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~  418 (768)
                      .++++|+.|++|++||+.....         .......|...+..+.|+|  ++.+|++|+.|++|++||+++++++..+
T Consensus       154 ~~l~sgs~D~~v~iwd~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~  224 (304)
T 2ynn_A          154 STFASGCLDRTVKVWSLGQSTP---------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL  224 (304)
T ss_dssp             TEEEEEETTSEEEEEETTCSSC---------SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCCc---------cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee
Confidence            6899999999999999974321         2223345667899999987  7789999999999999999999999999


Q ss_pred             eccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCC--EEEEEeCCCcEEEEECCC
Q 004214          419 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA--QIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       419 ~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iwd~~~  495 (768)
                      .+|...|.+++|+|++++|++|+.||+|++||+.+++++.++..|...+.+++|+|++.  ++++|+.|| +.+|++.+
T Consensus       225 ~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~  302 (304)
T 2ynn_A          225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN  302 (304)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred             CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999875  577777665 77777654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=8.8e-42  Score=354.89  Aligned_cols=297  Identities=23%  Similarity=0.333  Sum_probs=260.6

Q ss_pred             EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEE
Q 004214           21 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL  100 (768)
Q Consensus        21 ~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~v  100 (768)
                      .....|.||.+.|++++|+|++++  |+||+.||+|+|||..+++....+..|...|.+++|+|+|.+|++++.|+.+++
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~--l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v  132 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRR--IVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV  132 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSE--EEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCE--EEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence            457889999999999999999887  999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCce
Q 004214          101 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV  180 (768)
Q Consensus       101 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~  180 (768)
                      |++......                                                                       
T Consensus       133 ~~~~~~~~~-----------------------------------------------------------------------  141 (354)
T 2pbi_B          133 YPLTFDKNE-----------------------------------------------------------------------  141 (354)
T ss_dssp             EECCCCTTC-----------------------------------------------------------------------
T ss_pred             EEEeccccc-----------------------------------------------------------------------
Confidence            987532100                                                                       


Q ss_pred             eecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC
Q 004214          181 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN  260 (768)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  260 (768)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (354)
T 2pbi_B          142 --------------------------------------------------------------------------------  141 (354)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCC-
Q 004214          261 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL-  339 (768)
Q Consensus       261 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-  339 (768)
                               ........+.+|...|.++.  +.+++.. +++++.||+|++||+.+++++..+.+|...|.+++++|.. 
T Consensus       142 ---------~~~~~~~~~~~h~~~v~~~~--~~~~~~~-l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  209 (354)
T 2pbi_B          142 ---------NMAAKKKSVAMHTNYLSACS--FTNSDMQ-ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET  209 (354)
T ss_dssp             ---------CSGGGCEEEEECSSCEEEEE--ECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSS
T ss_pred             ---------cccccceeeeccCCcEEEEE--EeCCCCE-EEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCC
Confidence                     00001113345777777776  6666665 9999999999999999999999999999999999998853 


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 004214          340 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR  419 (768)
Q Consensus       340 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  419 (768)
                      ..++++|+.||.|++||++.+          .....+..|...|++++|+|++.+|++|+.|++|++||+++.+.+..+.
T Consensus       210 g~~l~sgs~Dg~v~~wd~~~~----------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~  279 (354)
T 2pbi_B          210 GNTFVSGGCDKKAMVWDMRSG----------QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS  279 (354)
T ss_dssp             CCEEEEEETTSCEEEEETTTC----------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             CCEEEEEeCCCeEEEEECCCC----------cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence            358999999999999999843          3556677899999999999999999999999999999999988777666


Q ss_pred             cc--CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214          420 GH--KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT  492 (768)
Q Consensus       420 ~~--~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  492 (768)
                      .+  ...+.+++|+|++++|++|+.|++|++||+.+++++..+.+|...|++++|+|+|++|++|+.||+|++|+
T Consensus       280 ~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          280 KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            43  34789999999999999999999999999999999999999999999999999999999999999999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2e-41  Score=350.61  Aligned_cols=289  Identities=21%  Similarity=0.348  Sum_probs=265.2

Q ss_pred             EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214          230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV  309 (768)
Q Consensus       230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i  309 (768)
                      .....+.+|.+.|.+++|++ +++++++++.||.|++||..++.....+..|...|.+++  +.+++.. +++|+.|+.|
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~--~s~~~~~-l~s~~~d~~v  121 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA--YAPSGNY-VACGGLDNIC  121 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEE--ECTTSSE-EEEEETTCEE
T ss_pred             hhheeecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEE--ECCCCCE-EEEEeCCCeE
Confidence            34567889999999999985 788999999999999999999999999999999999997  7777765 9999999999


Q ss_pred             EEEeCCCc----eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214          310 RLWDSESR----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS  385 (768)
Q Consensus       310 ~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  385 (768)
                      ++|++.++    .....+.+|.+.|.++.|++++  .+++++.|++|++||+..+          .....+.+|...|.+
T Consensus       122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~----------~~~~~~~~h~~~v~~  189 (340)
T 1got_B          122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETG----------QQTTTFTGHTGDVMS  189 (340)
T ss_dssp             EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTT----------EEEEEECCCSSCEEE
T ss_pred             EEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCC----------cEEEEEcCCCCceEE
Confidence            99999865    4566788999999999999985  4899999999999999743          355667789999999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec--C
Q 004214          386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG--H  463 (768)
Q Consensus       386 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--~  463 (768)
                      ++|+|+++++++|+.||.|++||++++.....+.+|...|++++|+|++++|++|+.||+|++||+++++.+..+..  +
T Consensus       190 ~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~  269 (340)
T 1got_B          190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI  269 (340)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTC
T ss_pred             EEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988887763  3


Q ss_pred             CCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214          464 TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  534 (768)
Q Consensus       464 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~  534 (768)
                      ...|++++|+|+|++|++|+.||.|++||+.+++.+..+.+|.++|++++|+|++.+|++|+.||.|++|+
T Consensus       270 ~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            35799999999999999999999999999999999999999999999999999999999999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.8e-41  Score=342.55  Aligned_cols=293  Identities=24%  Similarity=0.369  Sum_probs=263.2

Q ss_pred             EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214          230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV  309 (768)
Q Consensus       230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i  309 (768)
                      ...+.+.+|.+.|.+++|+| +++++++++.||.|++||+.++..+..+..|..+|.++.  +.+++.. |++|+.|+.|
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~s~s~d~~i   79 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK--FIARKNW-IIVGSDDFRI   79 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE--EEGGGTE-EEEEETTSEE
T ss_pred             eeEEeecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEE--EeCCCCE-EEEECCCCEE
Confidence            34566788999999999985 778999999999999999999999999999999999997  7777776 9999999999


Q ss_pred             EEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214          310 RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA  389 (768)
Q Consensus       310 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  389 (768)
                      ++||+.+++.+..+.+|...|.+++|+|+++ ++++|+.|++|++||+...         ......+.+|...|.+++|+
T Consensus        80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~---------~~~~~~~~~h~~~v~~v~~~  149 (304)
T 2ynn_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENN---------WALEQTFEGHEHFVMCVAFN  149 (304)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGT---------TEEEEEECCCCSCEEEEEEC
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCC---------cchhhhhcccCCcEEEEEEC
Confidence            9999999999999999999999999999966 8999999999999998742         12445677899999999999


Q ss_pred             c-CCCEEEEEeCCCcEEEEeCCCCceEEEEe-ccCCCeEEEEEcc--CCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC
Q 004214          390 P-NDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWSVEFSP--VDQVVITASGDKTIKIWSISDGSCLKTFEGHTS  465 (768)
Q Consensus       390 ~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~v~~s~--~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~  465 (768)
                      | ++.+|++|+.|++|++||+.+......+. +|...+..++|+|  ++.+|++|+.|++|++||+++++++.++.+|..
T Consensus       150 p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~  229 (304)
T 2ynn_A          150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS  229 (304)
T ss_dssp             TTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC
Confidence            9 67899999999999999998887666554 4668899999987  678999999999999999999999999999999


Q ss_pred             cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCC--EEEEEeCCCcEEEEEcCC
Q 004214          466 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTE--MFATGGSDALVNLWHDST  537 (768)
Q Consensus       466 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~--~l~s~~~dg~v~vw~~~~  537 (768)
                      .|.+++|+|++++|++|+.||+|++||+.+++++.++..|...+++++|+|++.  ++++|+.|| +.+|++..
T Consensus       230 ~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~  302 (304)
T 2ynn_A          230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN  302 (304)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred             CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence            999999999999999999999999999999999999999999999999999875  577777666 67777664

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.1e-42  Score=358.56  Aligned_cols=310  Identities=18%  Similarity=0.227  Sum_probs=240.8

Q ss_pred             cCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeC------CCcEEEEECCCCeeE----EEecCccce
Q 004214            7 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD------DATVRVWDLLAKKCV----ATLDKHFSR   76 (768)
Q Consensus         7 ~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~------dg~I~iWd~~~~~~~----~~l~~h~~~   76 (768)
                      +.+.....|++...    ...+|...|++++|||||++  ||+|+.      |+.|++|+..++...    ....+|...
T Consensus        23 ~g~~~~~~w~~p~~----~p~~H~~~V~~v~fSpDG~~--las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~   96 (357)
T 4g56_B           23 NGSSKGSAWGRPVT----APACMEVQIGAVRYRRDGAL--LLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAG   96 (357)
T ss_dssp             ---------------------CCCSEEEEEEECSSSCE--EEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSC
T ss_pred             CCCccccccCCCCC----CcccccCCEEEEEECCCCCE--EEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCC
Confidence            33566677776533    34579999999999999998  999997      788999998877643    334568889


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEe
Q 004214           77 VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITV  156 (768)
Q Consensus        77 V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (768)
                      |++++|+|++. +++++.||+|++||+.+++.....                                            
T Consensus        97 V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~--------------------------------------------  131 (357)
T 4g56_B           97 VTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVN--------------------------------------------  131 (357)
T ss_dssp             EEEEEEETTTE-EEEEETTSCEEEC--------CCC--------------------------------------------
T ss_pred             EEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEE--------------------------------------------
Confidence            99999999985 556788999999998765321100                                            


Q ss_pred             eCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeec
Q 004214          157 GERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV  236 (768)
Q Consensus       157 ~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~  236 (768)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (357)
T 4g56_B          132 --------------------------------------------------------------------------------  131 (357)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC
Q 004214          237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES  316 (768)
Q Consensus       237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~  316 (768)
                                                            .....+|...|.+++  +.+++.. |++|+.||.|++||+.+
T Consensus       132 --------------------------------------~~~~~~h~~~V~~v~--~spdg~~-l~sgs~dg~v~iwd~~~  170 (357)
T 4g56_B          132 --------------------------------------KFAKYEHDDIVKTLS--VFSDGTQ-AVSGGKDFSVKVWDLSQ  170 (357)
T ss_dssp             --------------------------------------CEEECCCSSCEEEEE--ECSSSSE-EEEEETTSCEEEEETTT
T ss_pred             --------------------------------------eeccCCCCCCEEEEE--ECCCCCE-EEEEeCCCeEEEEECCC
Confidence                                                  002335777888887  6677765 99999999999999999


Q ss_pred             ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC-CCEE
Q 004214          317 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLV  395 (768)
Q Consensus       317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l  395 (768)
                      ++++..+.+|...|.+++|+|++..++++++.||.|++||++.+...        .......+...+.+++|+|+ +.+|
T Consensus       171 ~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~--------~~~~~~~~~~~v~~v~~sp~~~~~l  242 (357)
T 4g56_B          171 KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA--------TRIDFCASDTIPTSVTWHPEKDDTF  242 (357)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB--------CBCCCTTCCSCEEEEEECTTSTTEE
T ss_pred             CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee--------eeeeeccccccccchhhhhcccceE
Confidence            99999999999999999999998778999999999999999864321        11223446678999999997 5789


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCC-CEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEe
Q 004214          396 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT  474 (768)
Q Consensus       396 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  474 (768)
                      ++|+.|+.|++||+.+++.+..+.+|...|++++|+|++ ++|++|+.|++|+|||+++++++..+ +|...|++++|+|
T Consensus       243 a~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP  321 (357)
T 4g56_B          243 ACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSP  321 (357)
T ss_dssp             EEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECS
T ss_pred             EEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeC
Confidence            999999999999999999999999999999999999987 68999999999999999999888765 6999999999998


Q ss_pred             -CCCEEEEEeCCCcEEEEECCCCe
Q 004214          475 -RGAQIVSCGADGLVKLWTVRTGE  497 (768)
Q Consensus       475 -~~~~l~s~~~dg~i~iwd~~~~~  497 (768)
                       ++++|++++.||+|++|++.+..
T Consensus       322 ~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          322 LDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             SSTTEEEEEETTSCEEEEECC---
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCC
Confidence             79999999999999999997643

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.4e-41  Score=353.67  Aligned_cols=247  Identities=18%  Similarity=0.217  Sum_probs=202.5

Q ss_pred             CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE----eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEE
Q 004214          280 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG----VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW  355 (768)
Q Consensus       280 ~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw  355 (768)
                      +|...|.+++  +.+++ . +++++.||.|++||+.+++...    ...+|...|.+++|+|++. +|++++.|+.|++|
T Consensus        92 ~~~~~V~~~~--~s~d~-~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iw  166 (357)
T 4g56_B           92 QTEAGVTDVA--WVSEK-G-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVW  166 (357)
T ss_dssp             ECSSCEEEEE--EETTT-E-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEE
T ss_pred             CCCCCEEEEE--EcCCC-C-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEE
Confidence            4556667765  55544 3 5567778888888887766543    2347999999999999976 89999999999999


Q ss_pred             eCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceEEEEe--ccCCCeEEEEEcc
Q 004214          356 SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSP  432 (768)
Q Consensus       356 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~v~~s~  432 (768)
                      |+..          ......+..|...|++++|+|++. ++++++.||.|++||+++++....+.  .|...+++++|+|
T Consensus       167 d~~~----------~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp  236 (357)
T 4g56_B          167 DLSQ----------KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHP  236 (357)
T ss_dssp             ETTT----------TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECT
T ss_pred             ECCC----------CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhh
Confidence            9974          345666788999999999999874 78999999999999999988766544  4677899999999


Q ss_pred             C-CCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC-CEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEE
Q 004214          433 V-DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIW  510 (768)
Q Consensus       433 ~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  510 (768)
                      + +.+|++|+.|+.|++||+++++++.++.+|...|++++|+|++ ++|++|+.||+|+|||+++++++..+ +|.+.|+
T Consensus       237 ~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~  315 (357)
T 4g56_B          237 EKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVT  315 (357)
T ss_dssp             TSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEE
T ss_pred             cccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEE
Confidence            7 5789999999999999999999999999999999999999987 57999999999999999999988776 6999999


Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEEcCCHHHHH
Q 004214          511 ALAVGK-KTEMFATGGSDALVNLWHDSTAAERE  542 (768)
Q Consensus       511 ~l~~s~-~~~~l~s~~~dg~v~vw~~~~~~~~~  542 (768)
                      +++|+| ++.+|++|+.||.|++|++.+.....
T Consensus       316 ~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~  348 (357)
T 4g56_B          316 GVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTE  348 (357)
T ss_dssp             EEEECSSSTTEEEEEETTSCEEEEECC------
T ss_pred             EEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc
Confidence            999998 79999999999999999998754433

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.2e-40  Score=339.33  Aligned_cols=294  Identities=23%  Similarity=0.370  Sum_probs=263.0

Q ss_pred             eeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC-----ceeeeeeeCCccceEEEeeeeecCCCEEEEE
Q 004214          228 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-----MSCSYVLAGHSEIVLCLDTCALSSGKILIVT  302 (768)
Q Consensus       228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~  302 (768)
                      .+.+...+.+|.+.|.+++|++.++++|++++.|+.|++|++..     +..+..+.+|...|.++.  +.+++.. +++
T Consensus         6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~--~s~dg~~-l~s   82 (319)
T 3frx_A            6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT--LTADGAY-ALS   82 (319)
T ss_dssp             EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEE--ECTTSSE-EEE
T ss_pred             EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEE--ECCCCCE-EEE
Confidence            34556778899999999999988889999999999999999864     345667899999999997  6677765 999


Q ss_pred             EeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCC
Q 004214          303 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD  382 (768)
Q Consensus       303 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (768)
                      |+.|++|++||+.+++.+..+.+|...|.+++|+|++. ++++|+.|++|++||++..           ......+|...
T Consensus        83 ~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~-----------~~~~~~~h~~~  150 (319)
T 3frx_A           83 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQ-----------CLATLLGHNDW  150 (319)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSC-----------EEEEECCCSSC
T ss_pred             EeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-----------eEEEEeccCCc
Confidence            99999999999999999999999999999999999966 8999999999999998632           45566789999


Q ss_pred             eEEEEEccC------CCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce
Q 004214          383 INSLAVAPN------DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC  456 (768)
Q Consensus       383 i~~~~~s~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~  456 (768)
                      |.+++++|.      +..+++++.|+.|++||+.+.+....+.+|..+|++++|+|++++|++|+.||+|++||+.++++
T Consensus       151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~  230 (319)
T 3frx_A          151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA  230 (319)
T ss_dssp             EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred             EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            999999995      44899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec--------cCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214          457 LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD--------KHEDKIWALAVGKKTEMFATGGSDA  528 (768)
Q Consensus       457 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~l~~s~~~~~l~s~~~dg  528 (768)
                      +..+.. ...|.+++|+|++.+|++++.++ +++|++..+..+..+.        .|...+.+++|+|+|++|++|+.||
T Consensus       231 ~~~~~~-~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg  308 (319)
T 3frx_A          231 MYTLSA-QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN  308 (319)
T ss_dssp             EEEEEC-CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEecC-CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCc
Confidence            999985 46899999999999999888655 9999999888777664        2456799999999999999999999


Q ss_pred             cEEEEEcCCH
Q 004214          529 LVNLWHDSTA  538 (768)
Q Consensus       529 ~v~vw~~~~~  538 (768)
                      .|++|++.++
T Consensus       309 ~i~vWd~~t~  318 (319)
T 3frx_A          309 VIRVWQVMTA  318 (319)
T ss_dssp             CEEEEEEEEC
T ss_pred             eEEEEEEeec
Confidence            9999998763

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.8e-41  Score=347.23  Aligned_cols=305  Identities=24%  Similarity=0.386  Sum_probs=248.9

Q ss_pred             CEEEEEEEcCCC-cEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEE---EecCccceeEEEEEcCCCCEEEEEeCC
Q 004214           20 GFCTHYFKGHKG-VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA---TLDKHFSRVTSMAITSDGSTLISAGRD   95 (768)
Q Consensus        20 ~~~~~~l~gh~~-~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~---~l~~h~~~V~~l~fs~d~~~L~s~~~d   95 (768)
                      ..++..+.+|.+ .|.+++|+|+|++  ||+|+.|++|+|||+.++....   ...+|...|.+++|+|+|++|++++.|
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~--las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D   82 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTL--LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD   82 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSC--EEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCE--EEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC
Confidence            456788999988 9999999999988  9999999999999998886432   236899999999999999999999999


Q ss_pred             CeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeee
Q 004214           96 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ  175 (768)
Q Consensus        96 g~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~  175 (768)
                      +.|++||+.++.                                                                    
T Consensus        83 ~~v~iw~~~~~~--------------------------------------------------------------------   94 (345)
T 3fm0_A           83 ATTCIWKKNQDD--------------------------------------------------------------------   94 (345)
T ss_dssp             SCEEEEEECCC---------------------------------------------------------------------
T ss_pred             CcEEEEEccCCC--------------------------------------------------------------------
Confidence            999999865321                                                                    


Q ss_pred             cCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEE
Q 004214          176 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL  255 (768)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  255 (768)
                                                                                                      
T Consensus        95 --------------------------------------------------------------------------------   94 (345)
T 3fm0_A           95 --------------------------------------------------------------------------------   94 (345)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc---eEEEeeecccCcEEE
Q 004214          256 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGVGTGHMGAVGA  332 (768)
Q Consensus       256 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~  332 (768)
                                      ..+...+.+|...|.+++  +.+++.. |++|+.|+.|++||+.++   .++..+.+|...|.+
T Consensus        95 ----------------~~~~~~~~~h~~~v~~v~--~sp~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~  155 (345)
T 3fm0_A           95 ----------------FECVTTLEGHENEVKSVA--WAPSGNL-LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH  155 (345)
T ss_dssp             ----------------EEEEEEECCCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEE
T ss_pred             ----------------eEEEEEccCCCCCceEEE--EeCCCCE-EEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEE
Confidence                            001124556778888887  6666665 999999999999999765   456678899999999


Q ss_pred             EEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 004214          333 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL  412 (768)
Q Consensus       333 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~  412 (768)
                      ++|+|++. +|++++.|++|++|++...        .......+.+|...|.+++|+|++++|++|+.|++|++|+....
T Consensus       156 ~~~~p~~~-~l~s~s~d~~i~~w~~~~~--------~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~  226 (345)
T 3fm0_A          156 VVWHPSQE-LLASASYDDTVKLYREEED--------DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLP  226 (345)
T ss_dssp             EEECSSSS-CEEEEETTSCEEEEEEETT--------EEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECT
T ss_pred             EEECCCCC-EEEEEeCCCcEEEEEecCC--------CEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccC
Confidence            99999976 7999999999999998643        22244567789999999999999999999999999999996321


Q ss_pred             ---------------ceEEEEec-cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc----e-----eEEeecCCCcE
Q 004214          413 ---------------VSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS----C-----LKTFEGHTSSV  467 (768)
Q Consensus       413 ---------------~~~~~~~~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~----~-----~~~~~~~~~~v  467 (768)
                                     +.+..+.+ |...|.+++|+|++..|++++.|+.|++|+...+.    +     .....+|...|
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V  306 (345)
T 3fm0_A          227 GNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDV  306 (345)
T ss_dssp             TCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCE
T ss_pred             CCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcE
Confidence                           23445555 88899999999999999999999999999987543    1     12345899999


Q ss_pred             EEEEEEeCC-CEEEEEeCCCcEEEEECCCCeEEEEe
Q 004214          468 LRASFLTRG-AQIVSCGADGLVKLWTVRTGECIATY  502 (768)
Q Consensus       468 ~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~  502 (768)
                      ++++|+|++ .+|++|+.||.|++|++.+++.....
T Consensus       307 ~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          307 NCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             EEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred             eEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence            999999998 49999999999999999988766544

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.1e-41  Score=346.83  Aligned_cols=208  Identities=23%  Similarity=0.275  Sum_probs=177.0

Q ss_pred             eeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeC
Q 004214          278 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF  357 (768)
Q Consensus       278 ~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  357 (768)
                      +.+|...|.+++  +.+++.. |++|+.||+|++||+.+++++..+.+|...|.+++|+|++..++++++.|++|++||+
T Consensus       123 ~~~H~~~V~~v~--~spdg~~-l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~  199 (344)
T 4gqb_B          123 KYEHDDIVSTVS--VLSSGTQ-AVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT  199 (344)
T ss_dssp             EECCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             ccCCCCCEEEEE--ECCCCCE-EEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccc
Confidence            446788888887  6677765 9999999999999999999999999999999999999998889999999999999999


Q ss_pred             CCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCC-C
Q 004214          358 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD-Q  435 (768)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~-~  435 (768)
                      +.....        .......+...+.+++|+| ++++|++|+.||+|++||+++++++..+.+|...|++++|+|++ +
T Consensus       200 ~~~~~~--------~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~  271 (344)
T 4gqb_B          200 RCPKPA--------SQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVP  271 (344)
T ss_dssp             TSSSCE--------EECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSC
T ss_pred             ccccee--------eeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCe
Confidence            854211        1112234566799999999 56788999999999999999999999999999999999999998 5


Q ss_pred             EEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCC-EEEEEeCCCcEEEEECCCCe
Q 004214          436 VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTGE  497 (768)
Q Consensus       436 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~  497 (768)
                      +|++|+.|++|+|||+.+++++ .+.+|...|++++|+|++. +|++++.||+|++|++.+..
T Consensus       272 ~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          272 FLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             CEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             EEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            8999999999999999988765 5688999999999999986 56799999999999997653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.1e-40  Score=336.60  Aligned_cols=293  Identities=23%  Similarity=0.448  Sum_probs=249.2

Q ss_pred             EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCC-----CeeEEEecCccceeEEEEEcCCCCEEEEEeCC
Q 004214           21 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-----KKCVATLDKHFSRVTSMAITSDGSTLISAGRD   95 (768)
Q Consensus        21 ~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~-----~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~d   95 (768)
                      .+..+|.||.+.|++++|+|++. .+|++|+.|++|++||+.+     +.++..+.+|...|.+++|+|++++|++++.|
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~-~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D   86 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQP-NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD   86 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCT-TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEccccceEEEEEccCCCc-cEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence            34568999999999999999752 2499999999999999854     45678899999999999999999999999999


Q ss_pred             CeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeee
Q 004214           96 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ  175 (768)
Q Consensus        96 g~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~  175 (768)
                      ++|++||+.+++++                                                                  
T Consensus        87 ~~v~~wd~~~~~~~------------------------------------------------------------------  100 (319)
T 3frx_A           87 KTLRLWDVATGETY------------------------------------------------------------------  100 (319)
T ss_dssp             SEEEEEETTTTEEE------------------------------------------------------------------
T ss_pred             CEEEEEECCCCCee------------------------------------------------------------------
Confidence            99999998765422                                                                  


Q ss_pred             cCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEE
Q 004214          176 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL  255 (768)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  255 (768)
                                                                                                      
T Consensus       101 --------------------------------------------------------------------------------  100 (319)
T 3frx_A          101 --------------------------------------------------------------------------------  100 (319)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEE
Q 004214          256 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF  335 (768)
Q Consensus       256 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  335 (768)
                                          ..+.+|...|.+++  +.+++.. +++|+.||.|++||+.. .++..+.+|...|.++.+
T Consensus       101 --------------------~~~~~h~~~v~~~~--~~~~~~~-l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~  156 (319)
T 3frx_A          101 --------------------QRFVGHKSDVMSVD--IDKKASM-IISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRV  156 (319)
T ss_dssp             --------------------EEEECCSSCEEEEE--ECTTSCE-EEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEE
T ss_pred             --------------------EEEccCCCcEEEEE--EcCCCCE-EEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEE
Confidence                                13345667777776  5565554 99999999999999974 567778899999999999


Q ss_pred             ecCC-----CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214          336 SKKL-----QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP  410 (768)
Q Consensus       336 ~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  410 (768)
                      .|..     ..++++++.|+.|++||+..          ......+.+|...|.+++|+|++++|++|+.||.|++||+.
T Consensus       157 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~----------~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~  226 (319)
T 3frx_A          157 VPNEKADDDSVTIISAGNDKMVKAWNLNQ----------FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA  226 (319)
T ss_dssp             CCC------CCEEEEEETTSCEEEEETTT----------TEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             ccCCCCCCCccEEEEEeCCCEEEEEECCc----------chhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            9853     23799999999999999974          23455667899999999999999999999999999999999


Q ss_pred             CCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee--------cCCCcEEEEEEEeCCCEEEEE
Q 004214          411 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE--------GHTSSVLRASFLTRGAQIVSC  482 (768)
Q Consensus       411 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~s~  482 (768)
                      +++.+..+.. ..+|.+++|+|++.+|++++.+ .+++|++..+..+..+.        .|...+.+++|+|+|++|++|
T Consensus       227 ~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg  304 (319)
T 3frx_A          227 AKKAMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG  304 (319)
T ss_dssp             TTEEEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEE
T ss_pred             CCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEe
Confidence            9999988875 4689999999999999988764 59999998887777664        346679999999999999999


Q ss_pred             eCCCcEEEEECCCC
Q 004214          483 GADGLVKLWTVRTG  496 (768)
Q Consensus       483 ~~dg~i~iwd~~~~  496 (768)
                      +.||.|++||+.++
T Consensus       305 ~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          305 YTDNVIRVWQVMTA  318 (319)
T ss_dssp             ETTSCEEEEEEEEC
T ss_pred             ecCceEEEEEEeec
Confidence            99999999998764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.1e-40  Score=341.57  Aligned_cols=289  Identities=19%  Similarity=0.312  Sum_probs=262.3

Q ss_pred             EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214          231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR  310 (768)
Q Consensus       231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~  310 (768)
                      ....+.+|...|.+++|++ ++.+|++|+.|+.|++||..++.....+..|...|.+++  +.|++.. +++|+.|+.++
T Consensus        56 ~~~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~--~sp~g~~-lasg~~d~~i~  131 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA--YAPSGCA-IACGGLDNKCS  131 (354)
T ss_dssp             EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEE--ECTTSSE-EEEESTTSEEE
T ss_pred             EEEEecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEE--ECCCCCE-EEEeeCCCCEE
Confidence            4467789999999999985 678999999999999999999999989999999999987  7777775 99999999999


Q ss_pred             EEeCCCc------eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeE
Q 004214          311 LWDSESR------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN  384 (768)
Q Consensus       311 iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~  384 (768)
                      +|++...      .....+.+|...|.+++|+|++. .+++++.|++|++||+..+          .....+.+|...|.
T Consensus       132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~----------~~~~~~~~h~~~v~  200 (354)
T 2pbi_B          132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESG----------QLLQSFHGHGADVL  200 (354)
T ss_dssp             EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTC----------CEEEEEECCSSCEE
T ss_pred             EEEEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCC----------eEEEEEcCCCCCeE
Confidence            9998643      23455678999999999999966 7999999999999999743          35667788999999


Q ss_pred             EEEEcc--CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec
Q 004214          385 SLAVAP--NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG  462 (768)
Q Consensus       385 ~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~  462 (768)
                      +++++|  ++++|++|+.||.|++||+++++.+..+.+|...|++++|+|++.+|++|+.|++|++||++.+..+..+..
T Consensus       201 ~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~  280 (354)
T 2pbi_B          201 CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK  280 (354)
T ss_dssp             EEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence            999988  578999999999999999999999999999999999999999999999999999999999999988877764


Q ss_pred             C--CCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214          463 H--TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  534 (768)
Q Consensus       463 ~--~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~  534 (768)
                      +  ...+.+++|+|+|++|++|+.||.|++||+.+++++..+.+|.+.|++++|+|+|++|++|+.||.|++|+
T Consensus       281 ~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          281 ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            4  35789999999999999999999999999999999999999999999999999999999999999999995

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.4e-40  Score=342.90  Aligned_cols=243  Identities=19%  Similarity=0.209  Sum_probs=208.2

Q ss_pred             CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE----eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEe
Q 004214          281 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG----VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS  356 (768)
Q Consensus       281 ~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  356 (768)
                      +...|.+++  +.++ +. +++|+.||.|++||+.+++.+.    ...+|.+.|++++|+|+++ +|++|+.|++|++||
T Consensus        81 ~~~~v~~~~--~s~d-~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd  155 (344)
T 4gqb_B           81 TEAGVADLT--WVGE-RG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWD  155 (344)
T ss_dssp             ESSCEEEEE--EETT-TE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEE
T ss_pred             cCCCEEEEE--EeCC-Ce-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEE
Confidence            345677775  5554 44 8899999999999999876543    3458999999999999976 899999999999999


Q ss_pred             CCCCCCCCccccccceeeEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceEEEEe--ccCCCeEEEEEccC
Q 004214          357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPV  433 (768)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~v~~s~~  433 (768)
                      +..          ......+.+|...|++++|+|++ .+|++++.|++|++||+++++....+.  .|...+.+++|+|+
T Consensus       156 ~~~----------~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~  225 (344)
T 4gqb_B          156 LAQ----------QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ  225 (344)
T ss_dssp             TTT----------TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSS
T ss_pred             CCC----------CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCC
Confidence            974          34667778899999999999987 478999999999999999999888764  35567999999995


Q ss_pred             -CCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC-CEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEE
Q 004214          434 -DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA  511 (768)
Q Consensus       434 -~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  511 (768)
                       +++|++|+.||+|++||+++++++.++.+|...|++++|+|++ ++|++|+.||+|+|||+.+++++ .+.+|.+.|++
T Consensus       226 ~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~  304 (344)
T 4gqb_B          226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRD  304 (344)
T ss_dssp             CTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEE
T ss_pred             CCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEE
Confidence             5789999999999999999999999999999999999999998 57999999999999999999876 46789999999


Q ss_pred             EEEcCCCC-EEEEEeCCCcEEEEEcCCHH
Q 004214          512 LAVGKKTE-MFATGGSDALVNLWHDSTAA  539 (768)
Q Consensus       512 l~~s~~~~-~l~s~~~dg~v~vw~~~~~~  539 (768)
                      ++|+|+++ +|++||.||.|++|++.++.
T Consensus       305 v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          305 ATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             EEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             EEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            99999986 57799999999999998754

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=9.9e-40  Score=338.29  Aligned_cols=326  Identities=17%  Similarity=0.235  Sum_probs=276.5

Q ss_pred             CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 004214           29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC  108 (768)
Q Consensus        29 h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~  108 (768)
                      |.+.|.+++|+|||+.  ++++..++.+.+|+...........+|...|++++|+|++++|++++ ||.|++||+.++..
T Consensus         8 ~~~~v~~~~~s~dg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~   84 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQM--QPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN   84 (337)
T ss_dssp             EEEECCEEEECSSSCE--EECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred             cCCceeEEEECCCCCE--EEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence            5678999999999987  88888777777887666555555557999999999999999999999 99999999876431


Q ss_pred             eeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccC
Q 004214          109 KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDD  188 (768)
Q Consensus       109 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~  188 (768)
                      ...+.                                                                           
T Consensus        85 ~~~~~---------------------------------------------------------------------------   89 (337)
T 1gxr_A           85 KSPVS---------------------------------------------------------------------------   89 (337)
T ss_dssp             CSCSE---------------------------------------------------------------------------
T ss_pred             eeeee---------------------------------------------------------------------------
Confidence            10000                                                                           


Q ss_pred             cccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEE
Q 004214          189 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYD  268 (768)
Q Consensus       189 ~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d  268 (768)
                                                                                                      
T Consensus        90 --------------------------------------------------------------------------------   89 (337)
T 1gxr_A           90 --------------------------------------------------------------------------------   89 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce--EEEeeecccCcEEEEEEecCCCcEEEEE
Q 004214          269 LSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC--CVGVGTGHMGAVGAVAFSKKLQNFLVSG  346 (768)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~  346 (768)
                            .....+|...+.++.  +.+++.. +++++.||.|++||+.+++  ....+..|...|.+++|+|++. +++++
T Consensus        90 ------~~~~~~~~~~v~~~~--~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~  159 (337)
T 1gxr_A           90 ------QLDCLNRDNYIRSCK--LLPDGCT-LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSC  159 (337)
T ss_dssp             ------EEECSCTTSBEEEEE--ECTTSSE-EEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEE
T ss_pred             ------cccccCCCCcEEEEE--EcCCCCE-EEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCC-EEEEE
Confidence                  001113556667765  5566654 8888999999999998876  5667788999999999999865 89999


Q ss_pred             eCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeE
Q 004214          347 SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIW  426 (768)
Q Consensus       347 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~  426 (768)
                      +.||.|++||+...          ........|...|.+++|+|+++++++++.||.|++||+++++.+..+. +..++.
T Consensus       160 ~~dg~v~~~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~  228 (337)
T 1gxr_A          160 CSDGNIAVWDLHNQ----------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIF  228 (337)
T ss_dssp             ETTSCEEEEETTTT----------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEE
T ss_pred             eCCCcEEEEeCCCC----------ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceE
Confidence            99999999999743          3455667799999999999999999999999999999999998888775 788999


Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCC
Q 004214          427 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE  506 (768)
Q Consensus       427 ~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  506 (768)
                      +++|+|+++++++++.|+.|++||+.+++. ..+..|...|.+++|+|++++|++++.||.|++||+.+++.+.... |.
T Consensus       229 ~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-~~  306 (337)
T 1gxr_A          229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ES  306 (337)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CS
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec-CC
Confidence            999999999999999999999999988775 4667899999999999999999999999999999999999886654 88


Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214          507 DKIWALAVGKKTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       507 ~~v~~l~~s~~~~~l~s~~~dg~v~vw~~  535 (768)
                      ..|.+++|+|++++|++++.||.|++|++
T Consensus       307 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          307 SSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            99999999999999999999999999986

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.5e-41  Score=351.92  Aligned_cols=300  Identities=22%  Similarity=0.353  Sum_probs=263.1

Q ss_pred             EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214          230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV  309 (768)
Q Consensus       230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i  309 (768)
                      .....+.+|.+.|.+++|+| ++++|++|+.|+.|++||..+++....+..|...|.+++  +.+++.. +++|+.|+.+
T Consensus        57 ~~~~~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~--~s~~g~~-las~~~d~~v  132 (380)
T 3iz6_a           57 VCCRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECA--FAPNGQS-VACGGLDSAC  132 (380)
T ss_dssp             EEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCE--ECTTSSE-EEECCSSSCC
T ss_pred             EEeecccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEE--ECCCCCE-EEEeeCCCcE
Confidence            35567889999999999986 778999999999999999999999999999999999987  7777765 9999999999


Q ss_pred             EEEeCCCce-------EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCC
Q 004214          310 RLWDSESRC-------CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD  382 (768)
Q Consensus       310 ~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (768)
                      ++||+.+..       ....+.+|.+.|.++.|.|++...+++|+.|++|++||+..+.....     .......+|...
T Consensus       133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~-----~~~~~~~~h~~~  207 (380)
T 3iz6_a          133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI-----FGSEFPSGHTAD  207 (380)
T ss_dssp             EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE-----ECCCSSSSCCSC
T ss_pred             EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE-----eecccCCCCccC
Confidence            999987532       34567799999999999998777899999999999999985431100     000112568899


Q ss_pred             eEEEEEcc-CCCEEEEEeCCCcEEEEeCC-CCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214          383 INSLAVAP-NDSLVCTGSQDRTACVWRLP-DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF  460 (768)
Q Consensus       383 i~~~~~s~-~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~  460 (768)
                      |.+++++| ++.+|++|+.||+|++||++ ....+..+.+|...|++++|+|++++|++|+.||+|++||++++.++..+
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~  287 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY  287 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEe
Confidence            99999987 88999999999999999998 55788889999999999999999999999999999999999999999888


Q ss_pred             ecCC-------CcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEe----ccCCCcEEEEEEcCCCCEEEEEeCCCc
Q 004214          461 EGHT-------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY----DKHEDKIWALAVGKKTEMFATGGSDAL  529 (768)
Q Consensus       461 ~~~~-------~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~l~~s~~~~~l~s~~~dg~  529 (768)
                      ..+.       ..|++++|+|+|++|++|+.||.|++||+.+++.+..+    .+|.+.|++++|+|+|.+|++|+.||.
T Consensus       288 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~  367 (380)
T 3iz6_a          288 NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN  367 (380)
T ss_dssp             CCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred             cccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCC
Confidence            7543       24899999999999999999999999999999988887    679999999999999999999999999


Q ss_pred             EEEEEcCCH
Q 004214          530 VNLWHDSTA  538 (768)
Q Consensus       530 v~vw~~~~~  538 (768)
                      |++|++...
T Consensus       368 i~iW~~~~~  376 (380)
T 3iz6_a          368 LKIWAFSGH  376 (380)
T ss_dssp             EEEEECCSS
T ss_pred             EEEEecCCC
Confidence            999998754

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-39  Score=337.93  Aligned_cols=301  Identities=20%  Similarity=0.364  Sum_probs=253.6

Q ss_pred             EEEeeecccCC-ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeee---eeeCCccceEEEeeeeecCCCEEEEEEeC
Q 004214          230 ILSKRLVGYNE-EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY---VLAGHSEIVLCLDTCALSSGKILIVTGSK  305 (768)
Q Consensus       230 ~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~---~~~~~~~~v~~l~~~~~~~~~~~l~~~~~  305 (768)
                      .....+.+|.. .+..++|+| ++.+|++|+.|+.|++||+.++....   ...+|...|.+++  +.+++.. |++|+.
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~--~sp~g~~-l~s~s~   81 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVA--WSPCGNY-LASASF   81 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEE--ECTTSSE-EEEEET
T ss_pred             EEeeeecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEE--ECCCCCE-EEEEEC
Confidence            44566778877 899999985 78899999999999999998876432   2368999999998  7777765 999999


Q ss_pred             CCeEEEEeCCCc--eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCe
Q 004214          306 DNSVRLWDSESR--CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI  383 (768)
Q Consensus       306 dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i  383 (768)
                      |+.+++|+...+  .++..+.+|...|.+++|+|++. +|++++.|++|++||+....       ..........|...|
T Consensus        82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~-------~~~~~~~~~~h~~~v  153 (345)
T 3fm0_A           82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEED-------EYECVSVLNSHTQDV  153 (345)
T ss_dssp             TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTS-------CEEEEEEECCCCSCE
T ss_pred             CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCC-------CeEEEEEecCcCCCe
Confidence            999999998776  46778899999999999999966 89999999999999997542       223455667899999


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC-------
Q 004214          384 NSLAVAPNDSLVCTGSQDRTACVWRLPDLV--SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-------  454 (768)
Q Consensus       384 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~-------  454 (768)
                      .+++|+|++++|++|+.|++|++||..++.  ....+.+|...|++++|+|++++|++++.|++|++||....       
T Consensus       154 ~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~  233 (345)
T 3fm0_A          154 KHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVA  233 (345)
T ss_dssp             EEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCC
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccce
Confidence            999999999999999999999999998775  45678899999999999999999999999999999996321       


Q ss_pred             --------ceeEEeec-CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe---------EEEEeccCCCcEEEEEEcC
Q 004214          455 --------SCLKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE---------CIATYDKHEDKIWALAVGK  516 (768)
Q Consensus       455 --------~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~l~~s~  516 (768)
                              .++.++.+ |...|.+++|+|++..|++++.|+.|++|+...+.         ......+|...|++++|+|
T Consensus       234 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p  313 (345)
T 3fm0_A          234 CSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP  313 (345)
T ss_dssp             CC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECS
T ss_pred             eeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeC
Confidence                    34455555 88999999999999999999999999999987542         1223467999999999999


Q ss_pred             CC-CEEEEEeCCCcEEEEEcCCHHHHH
Q 004214          517 KT-EMFATGGSDALVNLWHDSTAAERE  542 (768)
Q Consensus       517 ~~-~~l~s~~~dg~v~vw~~~~~~~~~  542 (768)
                      ++ .+||+|+.||.|++|+..+++...
T Consensus       314 ~~~~~laS~s~Dg~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          314 KEPGLLASCSDDGEVAFWKYQRPEGLH  340 (345)
T ss_dssp             SSTTEEEEEETTSCEEEEEECC-----
T ss_pred             CCceEEEEcCCCCcEEEEEecCCCCcc
Confidence            98 599999999999999999876543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3e-39  Score=330.52  Aligned_cols=295  Identities=26%  Similarity=0.459  Sum_probs=255.6

Q ss_pred             CCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeE
Q 004214           19 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVV   98 (768)
Q Consensus        19 ~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i   98 (768)
                      .......+.||.+.|++++|+|++++  |++|+.||.|++||+.+++....+.+|...|.+++|+|++++|++++.|+.|
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i   89 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL   89 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSE--EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CceeEEEEcccCCcEEEEEECCCCCE--EEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence            34567789999999999999999887  9999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCC
Q 004214           99 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS  178 (768)
Q Consensus        99 ~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~  178 (768)
                      ++||+.+++++.                                                                    
T Consensus        90 ~vwd~~~~~~~~--------------------------------------------------------------------  101 (312)
T 4ery_A           90 KIWDVSSGKCLK--------------------------------------------------------------------  101 (312)
T ss_dssp             EEEETTTCCEEE--------------------------------------------------------------------
T ss_pred             EEEECCCCcEEE--------------------------------------------------------------------
Confidence            999987643221                                                                    


Q ss_pred             ceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEE
Q 004214          179 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA  258 (768)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  258 (768)
                                                                                                      
T Consensus       102 --------------------------------------------------------------------------------  101 (312)
T 4ery_A          102 --------------------------------------------------------------------------------  101 (312)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecC
Q 004214          259 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK  338 (768)
Q Consensus       259 ~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  338 (768)
                                        .+.+|...|.++.  +.+++.. +++|+.||.|++||+.+++.+..+..|..+|.+++|+|+
T Consensus       102 ------------------~~~~~~~~v~~~~--~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (312)
T 4ery_A          102 ------------------TLKGHSNYVFCCN--FNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD  160 (312)
T ss_dssp             ------------------EEECCSSCEEEEE--ECSSSSE-EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             ------------------EEcCCCCCEEEEE--EcCCCCE-EEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCC
Confidence                              2334555666665  5566655 999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 004214          339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF  418 (768)
Q Consensus       339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  418 (768)
                      +. ++++++.||.|++||+....         ........+...+.+++|+|++++|++++.||.|++||+.+++.+..+
T Consensus       161 ~~-~l~~~~~d~~i~~wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  230 (312)
T 4ery_A          161 GS-LIVSSSYDGLCRIWDTASGQ---------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY  230 (312)
T ss_dssp             SS-EEEEEETTSCEEEEETTTCC---------EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE
T ss_pred             CC-EEEEEeCCCcEEEEECCCCc---------eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence            66 89999999999999997532         112223456678999999999999999999999999999999999999


Q ss_pred             eccCCCeEE---EEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEe--CCCcEEEEEC
Q 004214          419 RGHKRGIWS---VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG--ADGLVKLWTV  493 (768)
Q Consensus       419 ~~~~~~v~~---v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~  493 (768)
                      .+|...+.+   ....+++.+|++|+.||.|++||+.+++++..+.+|...|.+++|+|++++|++++  .||.|++|+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence            988765433   23346789999999999999999999999999999999999999999999999987  6999999986


Q ss_pred             C
Q 004214          494 R  494 (768)
Q Consensus       494 ~  494 (768)
                      +
T Consensus       311 d  311 (312)
T 4ery_A          311 D  311 (312)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-42  Score=365.13  Aligned_cols=334  Identities=16%  Similarity=0.234  Sum_probs=282.2

Q ss_pred             CcEEEEEEeeCCCccEEEEE----------eCCCcEEEEECCCCe---eEEEecCccceeEEEEEcCCCCEEEEEeCCCe
Q 004214           31 GVVSSILFHPDTDKSLLFSG----------SDDATVRVWDLLAKK---CVATLDKHFSRVTSMAITSDGSTLISAGRDKV   97 (768)
Q Consensus        31 ~~V~~l~~spd~~~~~l~sg----------~~dg~I~iWd~~~~~---~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~   97 (768)
                      ..|.+++|+|+++ .++++|          +.|+.|+|||+.++.   .+..+ .|...|++++|+|++++|++++.||.
T Consensus        13 ~~v~~~~~sp~g~-~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~   90 (416)
T 2pm9_A           13 SRTATFAWSHDKI-PLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGS   90 (416)
T ss_dssp             EESCBCCBCSSSS-CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred             hhcceEeeCCCCC-CEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCe
Confidence            4688999999987 248999          899999999998876   44444 58899999999999999999999999


Q ss_pred             EEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecC
Q 004214           98 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS  177 (768)
Q Consensus        98 i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~  177 (768)
                      |++||+.+....                                                                    
T Consensus        91 v~vw~~~~~~~~--------------------------------------------------------------------  102 (416)
T 2pm9_A           91 LELYSTNEANNA--------------------------------------------------------------------  102 (416)
T ss_dssp             EEEECCSSTTSC--------------------------------------------------------------------
T ss_pred             EEEeeccccccc--------------------------------------------------------------------
Confidence            999998752100                                                                    


Q ss_pred             CceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEE
Q 004214          178 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV  257 (768)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  257 (768)
                                                                         ......+.+|...|.+++|++.++.++++
T Consensus       103 ---------------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  131 (416)
T 2pm9_A          103 ---------------------------------------------------INSMARFSNHSSSVKTVKFNAKQDNVLAS  131 (416)
T ss_dssp             ---------------------------------------------------CCEEEECCCSSSCCCEEEECSSSTTBEEE
T ss_pred             ---------------------------------------------------ccchhhccCCccceEEEEEcCCCCCEEEE
Confidence                                                               00112344577789999998776899999


Q ss_pred             EeCCCcEEEEECCCce------eeee---eeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecc--
Q 004214          258 ATNIEQVQVYDLSSMS------CSYV---LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH--  326 (768)
Q Consensus       258 ~~~~~~i~i~d~~~~~------~~~~---~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--  326 (768)
                      ++.++.|++||+.++.      ....   +..|...|.++.  +.+++..++++++.||.|++||+.+++.+..+..|  
T Consensus       132 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  209 (416)
T 2pm9_A          132 GGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA--WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSP  209 (416)
T ss_dssp             ECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE--ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCC
T ss_pred             EcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE--eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccc
Confidence            9999999999999886      3333   467999999998  77775556999999999999999999999888876  


Q ss_pred             ----cCcEEEEEEecCCCcEEEEEeCCC---eEEEEeCCCCCCCCccccccceeeEee-ccCCCeEEEEEcc-CCCEEEE
Q 004214          327 ----MGAVGAVAFSKKLQNFLVSGSSDH---TIKVWSFDGLSDDAEQPMNLKAKAVVA-AHGKDINSLAVAP-NDSLVCT  397 (768)
Q Consensus       327 ----~~~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~-~~~~l~~  397 (768)
                          ...|.+++|+|++..++++++.|+   .|++||++...         ....... .|...|.+++|+| ++++|++
T Consensus       210 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s  280 (416)
T 2pm9_A          210 NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN---------TPLQTLNQGHQKGILSLDWCHQDEHLLLS  280 (416)
T ss_dssp             SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT---------SCSBCCCSCCSSCEEEEEECSSCSSCEEE
T ss_pred             ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC---------CCcEEeecCccCceeEEEeCCCCCCeEEE
Confidence                789999999999877999999999   99999998542         1233344 7889999999999 9999999


Q ss_pred             EeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCC-CEEEEeeCCCcEEEEeCCCCceeEEeec--------------
Q 004214          398 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEG--------------  462 (768)
Q Consensus       398 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~--------------  462 (768)
                      ++.||.|++||+.+++.+..+.+|...|++++|+|++ .+|++++.|+.|++||+.++........              
T Consensus       281 ~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (416)
T 2pm9_A          281 SGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWN  360 (416)
T ss_dssp             EESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------
T ss_pred             EeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccc
Confidence            9999999999999999999999999999999999999 8999999999999999987764332211              


Q ss_pred             ---------------------CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC
Q 004214          463 ---------------------HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG  496 (768)
Q Consensus       463 ---------------------~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  496 (768)
                                           |..++.+++|+|+|++|++++.||.|+||++.+.
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          361 NVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             ------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             cccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence                                 6678889999999999999999999999998764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-39  Score=332.79  Aligned_cols=302  Identities=22%  Similarity=0.343  Sum_probs=240.2

Q ss_pred             CCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC--eeEEEe-cC-ccceeEEEEEcCCCCEEEEEe
Q 004214           18 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK--KCVATL-DK-HFSRVTSMAITSDGSTLISAG   93 (768)
Q Consensus        18 ~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~--~~~~~l-~~-h~~~V~~l~fs~d~~~L~s~~   93 (768)
                      .+.++++.+.+|.+.|.+++|+|+    +||+|+.|++|++||+.++  ..+..+ .+ |...|.+++|+|++++|++++
T Consensus         2 ~~~~~~~~~~~h~~~v~~~~~s~~----~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s   77 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIWSFDFSQG----ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS   77 (330)
T ss_dssp             -CCEEEEEEECCSSCEEEEEEETT----EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred             cccccceeeccCCCceeeeccCCC----EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence            356678899999999999999996    4999999999999999875  556666 45 999999999999999999999


Q ss_pred             CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceee
Q 004214           94 RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY  173 (768)
Q Consensus        94 ~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~  173 (768)
                      .|++|++||+......                                                                
T Consensus        78 ~D~~v~iw~~~~~~~~----------------------------------------------------------------   93 (330)
T 2hes_X           78 FDSTVSIWAKEESADR----------------------------------------------------------------   93 (330)
T ss_dssp             TTSCEEEEEC----------------------------------------------------------------------
T ss_pred             CCCcEEEEEcccCcCc----------------------------------------------------------------
Confidence            9999999997531100                                                                


Q ss_pred             eecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCC
Q 004214          174 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ  253 (768)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  253 (768)
                                                                                                      
T Consensus        94 --------------------------------------------------------------------------------   93 (330)
T 2hes_X           94 --------------------------------------------------------------------------------   93 (330)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC----ceEEEeeecccCc
Q 004214          254 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----RCCVGVGTGHMGA  329 (768)
Q Consensus       254 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~  329 (768)
                                     .........+.+|...|.+++  +.+++.. |++|+.|+.|++||+..    .+++..+.+|...
T Consensus        94 ---------------~~~~~~~~~~~~h~~~V~~v~--~sp~g~~-las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~  155 (330)
T 2hes_X           94 ---------------TFEMDLLAIIEGHENEVKGVA--WSNDGYY-LATCSRDKSVWIWETDESGEEYECISVLQEHSQD  155 (330)
T ss_dssp             ----------------CCCEEEEEEC----CEEEEE--ECTTSCE-EEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred             ---------------cccceeEEEEcCCCCcEEEEE--ECCCCCE-EEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence                           001122335667888888887  6676665 99999999999999943    3567788999999


Q ss_pred             EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEE
Q 004214          330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVW  407 (768)
Q Consensus       330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~  407 (768)
                      |.+++|+|++. +|++++.|++|++||....        .......+.+|...|.+++|+|+  +.+|++|+.|++|++|
T Consensus       156 v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw  226 (330)
T 2hes_X          156 VKHVIWHPSEA-LLASSSYDDTVRIWKDYDD--------DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW  226 (330)
T ss_dssp             EEEEEECSSSS-EEEEEETTSCEEEEEEETT--------EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred             eEEEEECCCCC-EEEEEcCCCeEEEEECCCC--------CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence            99999999965 8999999999999997632        22355667889999999999998  7789999999999999


Q ss_pred             eCCCC--------ceEEEEec-cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc--eeEE-eecCCC-cEEEEEEEe
Q 004214          408 RLPDL--------VSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS--CLKT-FEGHTS-SVLRASFLT  474 (768)
Q Consensus       408 d~~~~--------~~~~~~~~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~--~~~~-~~~~~~-~v~~~~~s~  474 (768)
                      |+.++        .....+.+ |...|.+++|++++ +|++++.||.|++||..++.  +... +.+|.. .|.+++|+|
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~  305 (330)
T 2hes_X          227 KYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE  305 (330)
T ss_dssp             EEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-
T ss_pred             EecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEec
Confidence            98654        34445554 89999999999755 89999999999999998774  3333 357887 899999999


Q ss_pred             --CCCEEEEEeCCCcEEEEECCC
Q 004214          475 --RGAQIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       475 --~~~~l~s~~~dg~i~iwd~~~  495 (768)
                        ++++|++|+.||+|++|++.+
T Consensus       306 ~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          306 LNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             ----CCEEEEETTSEEEEEEC--
T ss_pred             CCCceEEEEecCCCcEEEEEecc
Confidence              789999999999999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.9e-39  Score=335.02  Aligned_cols=296  Identities=20%  Similarity=0.272  Sum_probs=250.6

Q ss_pred             eeEEEeeecccCCceeEEEE-----ecCCCCEEEEEeCCCcEEEEECCCc-------eeeeeeeCCccceEEEeeeeecC
Q 004214          228 ELILSKRLVGYNEEILDLKF-----LGEEEQYLAVATNIEQVQVYDLSSM-------SCSYVLAGHSEIVLCLDTCALSS  295 (768)
Q Consensus       228 ~~~~~~~~~~~~~~i~~~~~-----~~~~~~~l~~~~~~~~i~i~d~~~~-------~~~~~~~~~~~~v~~l~~~~~~~  295 (768)
                      .......+.+|.+.|.+++|     .++++++|++|+.|+.|++||+.+.       .....+.+|...|.+++  +.++
T Consensus        10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~--~~~~   87 (343)
T 2xzm_R           10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLA--LSQE   87 (343)
T ss_dssp             EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEE--ECSS
T ss_pred             EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEE--ECCC
Confidence            34455678899999999999     6668899999999999999998753       45667899999999997  6676


Q ss_pred             CCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE
Q 004214          296 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV  375 (768)
Q Consensus       296 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  375 (768)
                      +.. +++|+.||+|++||+.+++.+..+.+|...|.+++|+|++. ++++++.|++|++||+....        ......
T Consensus        88 ~~~-l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~--------~~~~~~  157 (343)
T 2xzm_R           88 NCF-AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGEC--------KFSSAE  157 (343)
T ss_dssp             TTE-EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCE--------EEECCT
T ss_pred             CCE-EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCc--------eeeeec
Confidence            665 99999999999999999999999999999999999999976 79999999999999986320        001111


Q ss_pred             eeccCCCeEEEEEccCC----------CEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCc
Q 004214          376 VAAHGKDINSLAVAPND----------SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT  445 (768)
Q Consensus       376 ~~~~~~~i~~~~~s~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~  445 (768)
                      ...|...|.+++|+|++          .++++++.||.|++|| .+......+.+|...|++++|+|+|++|++|+.||.
T Consensus       158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~  236 (343)
T 2xzm_R          158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK  236 (343)
T ss_dssp             TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe
Confidence            23688899999999987          7899999999999999 456777888999999999999999999999999999


Q ss_pred             EEEEeCCC-CceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEE--Eec-----------cCCCcEEE
Q 004214          446 IKIWSISD-GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA--TYD-----------KHEDKIWA  511 (768)
Q Consensus       446 i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~-----------~~~~~v~~  511 (768)
                      |++||+.. ..+...+. +...|.+++|+|++.+++++ .|+.|++|++.+++...  .+.           +|...|++
T Consensus       237 v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  314 (343)
T 2xzm_R          237 LLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTS  314 (343)
T ss_dssp             EEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEE
T ss_pred             EEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEE
Confidence            99999954 44555553 56779999999999887655 57889999998876543  443           67888999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          512 LAVGKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       512 l~~s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      ++|+|+|++|++|+.||.|++|++.++
T Consensus       315 ~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          315 LAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             EEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             EEECCCCCeEEEecCCceEEEEEEEcc
Confidence            999999999999999999999998754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.9e-39  Score=333.25  Aligned_cols=293  Identities=24%  Similarity=0.429  Sum_probs=241.9

Q ss_pred             EEEEEEEcCCCcEEEEEE-----ee-CCCccEEEEEeCCCcEEEEECCC-------CeeEEEecCccceeEEEEEcCCCC
Q 004214           21 FCTHYFKGHKGVVSSILF-----HP-DTDKSLLFSGSDDATVRVWDLLA-------KKCVATLDKHFSRVTSMAITSDGS   87 (768)
Q Consensus        21 ~~~~~l~gh~~~V~~l~~-----sp-d~~~~~l~sg~~dg~I~iWd~~~-------~~~~~~l~~h~~~V~~l~fs~d~~   87 (768)
                      .+...|.||.+.|++++|     +| +++.  |++|+.|++|++||+.+       +.+...+.+|...|.+++|+|++.
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~--l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~   89 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPV--LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC   89 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCE--EEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCE--EEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence            456789999999999999     66 7766  99999999999999974       356778999999999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEc
Q 004214           88 TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA  167 (768)
Q Consensus        88 ~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~  167 (768)
                      +|++++.|++|++||+.+++++                                                          
T Consensus        90 ~l~s~s~D~~v~lwd~~~~~~~----------------------------------------------------------  111 (343)
T 2xzm_R           90 FAISSSWDKTLRLWDLRTGTTY----------------------------------------------------------  111 (343)
T ss_dssp             EEEEEETTSEEEEEETTSSCEE----------------------------------------------------------
T ss_pred             EEEEEcCCCcEEEEECCCCcEE----------------------------------------------------------
Confidence            9999999999999998764321                                                          


Q ss_pred             CCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEE
Q 004214          168 DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKF  247 (768)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  247 (768)
                                                                                                      
T Consensus       112 --------------------------------------------------------------------------------  111 (343)
T 2xzm_R          112 --------------------------------------------------------------------------------  111 (343)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee--ec
Q 004214          248 LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG--TG  325 (768)
Q Consensus       248 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~  325 (768)
                                                  ..+.+|...|.+++  +.+++.. |++|+.|+.|++||+.........  .+
T Consensus       112 ----------------------------~~~~~h~~~v~~v~--~sp~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~  160 (343)
T 2xzm_R          112 ----------------------------KRFVGHQSEVYSVA--FSPDNRQ-ILSAGAEREIKLWNILGECKFSSAEKEN  160 (343)
T ss_dssp             ----------------------------EEEECCCSCEEEEE--ECSSTTE-EEEEETTSCEEEEESSSCEEEECCTTTS
T ss_pred             ----------------------------EEEcCCCCcEEEEE--ECCCCCE-EEEEcCCCEEEEEeccCCceeeeecccC
Confidence                                        13345667777776  6676665 899999999999999854433322  27


Q ss_pred             ccCcEEEEEEecCCC---------cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214          326 HMGAVGAVAFSKKLQ---------NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC  396 (768)
Q Consensus       326 ~~~~v~~~~~~~~~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  396 (768)
                      |...|.+++|+|++.         .++++++.||.|++||..           ......+..|...|.+++|+|+|++|+
T Consensus       161 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-----------~~~~~~~~~h~~~v~~~~~s~~g~~l~  229 (343)
T 2xzm_R          161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-----------FQIRYTFKAHESNVNHLSISPNGKYIA  229 (343)
T ss_dssp             CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-----------TEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-----------CceeEEEcCccccceEEEECCCCCEEE
Confidence            889999999999862         489999999999999943           124456678999999999999999999


Q ss_pred             EEeCCCcEEEEeCCC-CceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeE--Eee-----------c
Q 004214          397 TGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK--TFE-----------G  462 (768)
Q Consensus       397 ~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~--~~~-----------~  462 (768)
                      +|+.||.|++||+.+ ......+ .+...|.+++|+|++.+++++ .|+.|++||+.+++...  .+.           +
T Consensus       230 sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (343)
T 2xzm_R          230 TGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG  307 (343)
T ss_dssp             EEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC
T ss_pred             EEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcC
Confidence            999999999999954 3444444 356679999999999988755 57889999998876544  443           6


Q ss_pred             CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe
Q 004214          463 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE  497 (768)
Q Consensus       463 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  497 (768)
                      |...|++++|+|+|++|++|+.||.|++|++.+++
T Consensus       308 ~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          308 KNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             SCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             CCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence            88899999999999999999999999999987654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.1e-39  Score=349.13  Aligned_cols=343  Identities=14%  Similarity=0.175  Sum_probs=290.0

Q ss_pred             cEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 004214           32 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT  111 (768)
Q Consensus        32 ~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~  111 (768)
                      .+++++|+|++++  |++|+.||.|++||+.+++....+..| ..+....|+|++++|++++.||.|++||+.+++... 
T Consensus        58 ~~~~~~~s~~g~~--l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-  133 (420)
T 3vl1_A           58 AGKGNTFEKVGSH--LYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE-  133 (420)
T ss_dssp             CCTTCEEEEEETT--EEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE-
T ss_pred             cccceeeeecCCe--EEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee-
Confidence            3458999999999  999999999999999998887777777 456666789999999999999999999987654321 


Q ss_pred             eecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCccc
Q 004214          112 VPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKR  191 (768)
Q Consensus       112 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  191 (768)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (420)
T 3vl1_A          134 --------------------------------------------------------------------------------  133 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004214          192 GFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS  271 (768)
Q Consensus       192 ~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~  271 (768)
                                                                .+.+|...|.+++|++ ++.+|++++.|+.|++||+.+
T Consensus       134 ------------------------------------------~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~  170 (420)
T 3vl1_A          134 ------------------------------------------IDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKD  170 (420)
T ss_dssp             ------------------------------------------ETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred             ------------------------------------------ecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCC
Confidence                                                      1234667888888885 677999999999999999999


Q ss_pred             ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec---ccCcEEEEEEecCCCcEEEEEeC
Q 004214          272 MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG---HMGAVGAVAFSKKLQNFLVSGSS  348 (768)
Q Consensus       272 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~  348 (768)
                      ++....+.+|...|.+++  +.+++.. |++++.||.|++||+.+++.+..+..   |...+.++++.|.+...      
T Consensus       171 ~~~~~~~~~h~~~v~~~~--~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------  241 (420)
T 3vl1_A          171 GSNPRTLIGHRATVTDIA--IIDRGRN-VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ------  241 (420)
T ss_dssp             CCCCEEEECCSSCEEEEE--EETTTTE-EEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS------
T ss_pred             CcCceEEcCCCCcEEEEE--EcCCCCE-EEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce------
Confidence            999999999999999998  7777776 99999999999999999999888874   66778888887764421      


Q ss_pred             CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe-ccCCCeEE
Q 004214          349 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWS  427 (768)
Q Consensus       349 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~  427 (768)
                                                ....+...+.+++|+|++++|++|+.||.|++||+.+++.+..+. .|...|++
T Consensus       242 --------------------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  295 (420)
T 3vl1_A          242 --------------------------LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNS  295 (420)
T ss_dssp             --------------------------CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEE
T ss_pred             --------------------------eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCcee
Confidence                                      012345678889999999999999999999999999998877765 47889999


Q ss_pred             EEEccCCC-EEEEeeCCCcEEEEeCCCCce-eEEeec-CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC--------
Q 004214          428 VEFSPVDQ-VVITASGDKTIKIWSISDGSC-LKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG--------  496 (768)
Q Consensus       428 v~~s~~~~-~l~t~~~d~~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--------  496 (768)
                      ++|+|+++ +|++|+.||.|++||+++++. +..+.+ |...|.++ +.+++++|++++.||.|++|++...        
T Consensus       296 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~  374 (420)
T 3vl1_A          296 LTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIE  374 (420)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEEC
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCcccee
Confidence            99999998 999999999999999998754 778877 56677777 5568889999999999999998763        


Q ss_pred             -eEEEEeccCCCcEEEEEEcCCCC---EEEEEeCCCcEEEEEcCC
Q 004214          497 -ECIATYDKHEDKIWALAVGKKTE---MFATGGSDALVNLWHDST  537 (768)
Q Consensus       497 -~~~~~~~~~~~~v~~l~~s~~~~---~l~s~~~dg~v~vw~~~~  537 (768)
                       .....+..|.+.|.+++|+|++.   .+++++.+|.+.+|++..
T Consensus       375 ~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          375 FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             ccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence             22234557889999999999999   888888999999999865

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.5e-38  Score=342.85  Aligned_cols=322  Identities=29%  Similarity=0.542  Sum_probs=277.0

Q ss_pred             EEEEEEEcCCCcE-EEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEE
Q 004214           21 FCTHYFKGHKGVV-SSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN   99 (768)
Q Consensus        21 ~~~~~l~gh~~~V-~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~   99 (768)
                      .....+.+|.+.| +|+  +++|++  +++|+.||+|++||+.+++++..+.+|.+.|++++|+  +++|++++.||.|+
T Consensus       109 ~~~~~l~~h~~~v~~~~--~~~g~~--l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~  182 (445)
T 2ovr_B          109 KSPKVLKGHDDHVITCL--QFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLK  182 (445)
T ss_dssp             CCCEEEECSTTSCEEEE--EEETTE--EEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred             ceeEEecccCCCcEEEE--EEcCCE--EEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEE
Confidence            3457889999875 554  455676  9999999999999999999999999999999999998  66999999999999


Q ss_pred             EEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCc
Q 004214          100 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD  179 (768)
Q Consensus       100 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~  179 (768)
                      +||+.+++++.                                                                     
T Consensus       183 vwd~~~~~~~~---------------------------------------------------------------------  193 (445)
T 2ovr_B          183 VWNAETGECIH---------------------------------------------------------------------  193 (445)
T ss_dssp             EEETTTTEEEE---------------------------------------------------------------------
T ss_pred             EEECCcCcEEE---------------------------------------------------------------------
Confidence            99987654221                                                                     


Q ss_pred             eeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEe
Q 004214          180 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT  259 (768)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  259 (768)
                                                                                                      
T Consensus       194 --------------------------------------------------------------------------------  193 (445)
T 2ovr_B          194 --------------------------------------------------------------------------------  193 (445)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCC
Q 004214          260 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL  339 (768)
Q Consensus       260 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  339 (768)
                                       .+.+|...|.++.  +.  +.. +++|+.||.|++||+.+++.+..+.+|...|.++++  ++
T Consensus       194 -----------------~~~~h~~~v~~~~--~~--~~~-l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~  249 (445)
T 2ovr_B          194 -----------------TLYGHTSTVRCMH--LH--EKR-VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG  249 (445)
T ss_dssp             -----------------EECCCSSCEEEEE--EE--TTE-EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred             -----------------EECCCCCcEEEEE--ec--CCE-EEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence                             2234555666664  32  333 888999999999999999888888999999999998  33


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 004214          340 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR  419 (768)
Q Consensus       340 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  419 (768)
                      . ++++++.||.|++||+..          .........|...|.+++|  ++.++++|+.||.|++||+.+++.+..+.
T Consensus       250 ~-~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  316 (445)
T 2ovr_B          250 R-RVVSGAYDFMVKVWDPET----------ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT  316 (445)
T ss_dssp             S-CEEEEETTSCEEEEEGGG----------TEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             C-EEEEEcCCCEEEEEECCC----------CcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc
Confidence            3 689999999999999873          3355566788899999998  78899999999999999999999999999


Q ss_pred             ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec---CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC
Q 004214          420 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG  496 (768)
Q Consensus       420 ~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  496 (768)
                      +|...+.++.++  ++++++|+.||.|++||+.+++++..+.+   |...|++++|+  +++|++|+.||.|++||+.++
T Consensus       317 ~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~  392 (445)
T 2ovr_B          317 GHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG  392 (445)
T ss_dssp             CCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred             CCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCC
Confidence            999999988875  67999999999999999999999999986   88899999985  679999999999999999999


Q ss_pred             eEEEEe-----ccCCCcEEEEEEcCCCCEEEEEeCCCc----EEEEEcCCH
Q 004214          497 ECIATY-----DKHEDKIWALAVGKKTEMFATGGSDAL----VNLWHDSTA  538 (768)
Q Consensus       497 ~~~~~~-----~~~~~~v~~l~~s~~~~~l~s~~~dg~----v~vw~~~~~  538 (768)
                      +.+..+     ..|.+.|++++|+|++.++++|+.||.    |.+||+...
T Consensus       393 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          393 EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            999888     468899999999999999999999998    999998753

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.6e-38  Score=325.17  Aligned_cols=292  Identities=25%  Similarity=0.454  Sum_probs=263.2

Q ss_pred             EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214          230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV  309 (768)
Q Consensus       230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i  309 (768)
                      .....+.+|...|.+++|++ +++++++++.||.|++|+..+++....+.+|...|.+++  +.+++.. |++|+.||.|
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~-l~s~~~d~~i   89 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA--WSSDSNL-LVSASDDKTL   89 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE--ECTTSSE-EEEEETTSEE
T ss_pred             eeEEEEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEE--EcCCCCE-EEEECCCCEE
Confidence            34566789999999999986 778999999999999999999999999999999999997  7777765 9999999999


Q ss_pred             EEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214          310 RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA  389 (768)
Q Consensus       310 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  389 (768)
                      ++||+.+++.+..+.+|...|.+++|+|++. ++++++.||.|++||+...          .....+..|...|.+++|+
T Consensus        90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~  158 (312)
T 4ery_A           90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTG----------KCLKTLPAHSDPVSAVHFN  158 (312)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTC----------CEEEEECCCSSCEEEEEEC
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC----------EEEEEecCCCCcEEEEEEc
Confidence            9999999999999999999999999999965 8999999999999999743          3455667889999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCceEEEEe-ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEE
Q 004214          390 PNDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL  468 (768)
Q Consensus       390 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  468 (768)
                      |+++++++++.||.|++||+.+++.+..+. .+..++.+++|+|++++|++++.|+.|++||+.+++++..+.+|...+.
T Consensus       159 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  238 (312)
T 4ery_A          159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY  238 (312)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSS
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceE
Confidence            999999999999999999999998877764 4667899999999999999999999999999999999999998876543


Q ss_pred             E--EEEE-eCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe--CCCcEEEEEcC
Q 004214          469 R--ASFL-TRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGG--SDALVNLWHDS  536 (768)
Q Consensus       469 ~--~~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~--~dg~v~vw~~~  536 (768)
                      .  ..++ +++.+|++|+.||.|++||+.+++++..+.+|...|.+++|+|++++|++++  .||.|++|+..
T Consensus       239 ~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            2  3344 6788999999999999999999999999999999999999999999999987  69999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-39  Score=329.29  Aligned_cols=293  Identities=25%  Similarity=0.423  Sum_probs=241.1

Q ss_pred             EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc--eeeeee-eC-CccceEEEeeeeecCCCEEEEEEeCC
Q 004214          231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM--SCSYVL-AG-HSEIVLCLDTCALSSGKILIVTGSKD  306 (768)
Q Consensus       231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--~~~~~~-~~-~~~~v~~l~~~~~~~~~~~l~~~~~d  306 (768)
                      ....+.+|.+.|.+++|++.   +|++++.|+.|++||+..+  .....+ .+ |...|.+++  +.+++.. |++|+.|
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~--~sp~~~~-las~s~D   79 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVA--WRPHTSL-LAAGSFD   79 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEE--ECTTSSE-EEEEETT
T ss_pred             cceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEE--ECCCCCE-EEEEeCC
Confidence            44567799999999999864   9999999999999999875  444455 44 999999998  7777765 9999999


Q ss_pred             CeEEEEeCCC-------ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeecc
Q 004214          307 NSVRLWDSES-------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH  379 (768)
Q Consensus       307 g~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  379 (768)
                      +.|++||+..       ..++..+.+|...|.+++|+|++. +|++++.|++|++||+.....      .......+..|
T Consensus        80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~------~~~~~~~~~~h  152 (330)
T 2hes_X           80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGE------EYECISVLQEH  152 (330)
T ss_dssp             SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCC------CCEEEEEECCC
T ss_pred             CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCC------CeEEEEEeccC
Confidence            9999999853       456778889999999999999966 899999999999999953211      22345567789


Q ss_pred             CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC--ceEEEEeccCCCeEEEEEccC--CCEEEEeeCCCcEEEEeCCCC-
Q 004214          380 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKRGIWSVEFSPV--DQVVITASGDKTIKIWSISDG-  454 (768)
Q Consensus       380 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~v~~s~~--~~~l~t~~~d~~i~iwd~~~~-  454 (768)
                      ...|.+++|+|++.+|++|+.|++|++||..++  +++..+.+|...|++++|+|+  +.+|++|+.|++|++||+..+ 
T Consensus       153 ~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~  232 (330)
T 2hes_X          153 SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD  232 (330)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEEC
T ss_pred             CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCC
Confidence            999999999999999999999999999998766  678889999999999999998  679999999999999998764 


Q ss_pred             -------ceeEEeec-CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe--EEEE-eccCCC-cEEEEEEcC--CCCE
Q 004214          455 -------SCLKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE--CIAT-YDKHED-KIWALAVGK--KTEM  520 (768)
Q Consensus       455 -------~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~-~~~~~~-~v~~l~~s~--~~~~  520 (768)
                             .+...+.+ |...|.+++|++++ +|++++.||.|++|+..+++  +... ..+|.. .|++++|+|  ++++
T Consensus       233 ~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~  311 (330)
T 2hes_X          233 EDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTI  311 (330)
T ss_dssp             TTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CC
T ss_pred             ccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceE
Confidence                   45556655 99999999999665 89999999999999998874  3433 356877 899999999  7899


Q ss_pred             EEEEeCCCcEEEEEcCC
Q 004214          521 FATGGSDALVNLWHDST  537 (768)
Q Consensus       521 l~s~~~dg~v~vw~~~~  537 (768)
                      |++|+.||.|++|++.+
T Consensus       312 las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          312 LATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEEETTSEEEEEEC--
T ss_pred             EEEecCCCcEEEEEecc
Confidence            99999999999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-39  Score=346.60  Aligned_cols=323  Identities=15%  Similarity=0.224  Sum_probs=269.4

Q ss_pred             EEEeecCCCcEEEEEC----CCCE------EEEEEEc----------CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEEC
Q 004214            2 FALLEGADRKVLVWDV----DGGF------CTHYFKG----------HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL   61 (768)
Q Consensus         2 ~latg~~dg~i~vwd~----~~~~------~~~~l~g----------h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~   61 (768)
                      +||+|+.||.|++||+    .++.      ....+..          |.+.|++++|+|++++  |++|+.||.|++|| 
T Consensus        60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg~i~i~~-  136 (425)
T 1r5m_A           60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS--IVTGVENGELRLWN-  136 (425)
T ss_dssp             EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE--EEEEETTSCEEEEE-
T ss_pred             EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE--EEEEeCCCeEEEEe-
Confidence            7999999999999999    8888      5666665          7889999999999887  99999999999999 


Q ss_pred             CCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhh
Q 004214           62 LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT  141 (768)
Q Consensus        62 ~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  141 (768)
                      .+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..+.....                     
T Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------------------  195 (425)
T 1r5m_A          137 KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS---------------------  195 (425)
T ss_dssp             TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------------------
T ss_pred             CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc---------------------
Confidence            68889999999999999999999999999999999999999998876655432111000                     


Q ss_pred             hhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeecc
Q 004214          142 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE  221 (768)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~  221 (768)
                                                                                                      
T Consensus       196 --------------------------------------------------------------------------------  195 (425)
T 1r5m_A          196 --------------------------------------------------------------------------------  195 (425)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEE
Q 004214          222 VPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV  301 (768)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~  301 (768)
                                         .+...                               ........+.++.  +.++ +. ++
T Consensus       196 -------------------~~~~~-------------------------------~~~~~~~~~~~~~--~~~~-~~-~~  221 (425)
T 1r5m_A          196 -------------------SINAE-------------------------------NHSGDGSLGVDVE--WVDD-DK-FV  221 (425)
T ss_dssp             ------------------------------------------------------------CCCBSCCE--EEET-TE-EE
T ss_pred             -------------------ceeec-------------------------------cccCCcceeeEEE--EcCC-CE-EE
Confidence                               00000                               0000111133333  3333 44 88


Q ss_pred             EEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC
Q 004214          302 TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK  381 (768)
Q Consensus       302 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  381 (768)
                      +++.+|.|++||+.+++.+..+..|...|.+++|+|++. ++++++.||.|++||+...          ........|..
T Consensus       222 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~----------~~~~~~~~~~~  290 (425)
T 1r5m_A          222 IPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNG----------NSQNCFYGHSQ  290 (425)
T ss_dssp             EECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEECSSSB----------SCSEEECCCSS
T ss_pred             EEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCC----------ccceEecCCCc
Confidence            889999999999999888888889999999999999976 8999999999999998743          34455567899


Q ss_pred             CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc------
Q 004214          382 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS------  455 (768)
Q Consensus       382 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~------  455 (768)
                      .|.+++|+|++ ++++++.||.|++||+.+++.+..+..|..+|.+++|+|++++|++++.||.|++||+.++.      
T Consensus       291 ~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~  369 (425)
T 1r5m_A          291 SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSL  369 (425)
T ss_dssp             CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----
T ss_pred             cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeee
Confidence            99999999999 99999999999999999999999999999999999999999999999999999999999888      


Q ss_pred             --------------eeEEeecCCC--cEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214          456 --------------CLKTFEGHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVR  494 (768)
Q Consensus       456 --------------~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  494 (768)
                                    ++..+.+|..  .|++++|+|++++|++++.||.|++|+++
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          370 YGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             ---------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             ecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence                          8999999977  99999999999999999999999999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.8e-38  Score=335.40  Aligned_cols=239  Identities=23%  Similarity=0.416  Sum_probs=190.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcE
Q 004214          251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV  330 (768)
Q Consensus       251 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  330 (768)
                      +++++++++.|+.|++||+.+++....+.+|...|.+++  +.+++.. |++|+.|+.|++||+.++++...+. +...+
T Consensus       134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~--~~p~~~~-l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v  209 (393)
T 1erj_A          134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD--YFPSGDK-LVSGSGDRTVRIWDLRTGQCSLTLS-IEDGV  209 (393)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE--ECTTSSE-EEEEETTSEEEEEETTTTEEEEEEE-CSSCE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEE--EcCCCCE-EEEecCCCcEEEEECCCCeeEEEEE-cCCCc
Confidence            334444444445555555555555556677888888887  6677765 9999999999999999998887765 56789


Q ss_pred             EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214          331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP  410 (768)
Q Consensus       331 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  410 (768)
                      .+++++|....++++|+.||.|++||+..+......   ........+|...|.+++|+|++++|++|+.||.|++||+.
T Consensus       210 ~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~---~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~  286 (393)
T 1erj_A          210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL---DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ  286 (393)
T ss_dssp             EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE---C------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee---cccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            999999944558999999999999998754211000   00011225688999999999999999999999999999997


Q ss_pred             CC------------ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEe----
Q 004214          411 DL------------VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT----  474 (768)
Q Consensus       411 ~~------------~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~----  474 (768)
                      +.            .....+.+|...|.+++|+|++.+|++|+.|+.|++||+.+++++..+.+|...|.+++|++    
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~  366 (393)
T 1erj_A          287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL  366 (393)
T ss_dssp             --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred             CCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCc
Confidence            53            34567889999999999999999999999999999999999999999999999999999986    


Q ss_pred             --CCCEEEEEeCCCcEEEEECCCC
Q 004214          475 --RGAQIVSCGADGLVKLWTVRTG  496 (768)
Q Consensus       475 --~~~~l~s~~~dg~i~iwd~~~~  496 (768)
                        ++++|++|+.||+|++|++...
T Consensus       367 ~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          367 GPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             CTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CCCCCEEEEECCCCcEEECccccc
Confidence              6889999999999999998653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-41  Score=360.69  Aligned_cols=288  Identities=14%  Similarity=0.254  Sum_probs=247.3

Q ss_pred             cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC----ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214          238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD  313 (768)
Q Consensus       238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd  313 (768)
                      +...|.+++|++ ++.+|++++.+|.|++||+.+    ......+.+|...|.++.  +.++++.+|++++.||.|++||
T Consensus        66 ~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~l~s~~~dg~v~iwd  142 (416)
T 2pm9_A           66 VDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK--FNAKQDNVLASGGNNGEIFIWD  142 (416)
T ss_dssp             CSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEE--ECSSSTTBEEEECSSSCEEBCB
T ss_pred             cCCceEEEEECC-CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEE--EcCCCCCEEEEEcCCCeEEEEE
Confidence            455778888874 677899999999999999987    457778899999999998  7777444599999999999999


Q ss_pred             CCCce------EEE---eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeecc-----
Q 004214          314 SESRC------CVG---VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH-----  379 (768)
Q Consensus       314 ~~~~~------~~~---~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----  379 (768)
                      +.++.      ...   ....|...|.+++|+|++..++++++.||.|++||+...          ........+     
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----------~~~~~~~~~~~~~~  212 (416)
T 2pm9_A          143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK----------KEVIHLSYTSPNSG  212 (416)
T ss_dssp             TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT----------EEEEEECCCCCSSC
T ss_pred             CCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC----------CcceEEeccccccc
Confidence            99876      322   346799999999999997779999999999999999853          233333333     


Q ss_pred             -CCCeEEEEEccCC-CEEEEEeCCC---cEEEEeCCCC-ceEEEEe-ccCCCeEEEEEcc-CCCEEEEeeCCCcEEEEeC
Q 004214          380 -GKDINSLAVAPND-SLVCTGSQDR---TACVWRLPDL-VSVVTFR-GHKRGIWSVEFSP-VDQVVITASGDKTIKIWSI  451 (768)
Q Consensus       380 -~~~i~~~~~s~~~-~~l~~~~~dg---~i~i~d~~~~-~~~~~~~-~~~~~v~~v~~s~-~~~~l~t~~~d~~i~iwd~  451 (768)
                       ...|.+++|+|++ .++++++.|+   .|++||++++ .+...+. +|...|++++|+| ++++|++++.|+.|++||+
T Consensus       213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~  292 (416)
T 2pm9_A          213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP  292 (416)
T ss_dssp             CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred             cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence             7889999999997 6899999999   9999999986 6677777 8999999999999 8999999999999999999


Q ss_pred             CCCceeEEeecCCCcEEEEEEEeCC-CEEEEEeCCCcEEEEECCCCeEEEEec---------------------------
Q 004214          452 SDGSCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRTGECIATYD---------------------------  503 (768)
Q Consensus       452 ~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~---------------------------  503 (768)
                      .+++++..+.+|...|++++|+|++ .+|++++.||.|++|++.++.......                           
T Consensus       293 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (416)
T 2pm9_A          293 ESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPS  372 (416)
T ss_dssp             SSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCC
T ss_pred             CCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccc
Confidence            9999999999999999999999999 899999999999999998765332211                           


Q ss_pred             --------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          504 --------KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       504 --------~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                              .|..++.+++|+|+|++|++++.||.|+||++.++
T Consensus       373 ~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          373 VFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             SSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             cccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence                    15677889999999999999999999999999874

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.8e-38  Score=332.96  Aligned_cols=285  Identities=27%  Similarity=0.471  Sum_probs=250.2

Q ss_pred             cccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCcc------------------ceEEEeeeeecCCC
Q 004214          236 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE------------------IVLCLDTCALSSGK  297 (768)
Q Consensus       236 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~------------------~v~~l~~~~~~~~~  297 (768)
                      .+|...|.+++|++ ++++|++++ ++.+++|++.++..+..+..|..                  .|.+++  +.+++.
T Consensus        61 ~~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~--~s~dg~  136 (393)
T 1erj_A           61 LDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC--FSPDGK  136 (393)
T ss_dssp             EECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEE--ECTTSS
T ss_pred             cCCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEE--ECCCCC
Confidence            36899999999986 677888876 58999999999988877765542                  377886  777776


Q ss_pred             EEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee
Q 004214          298 ILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA  377 (768)
Q Consensus       298 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  377 (768)
                      . |++|+.||.|++||+.+++.+..+.+|...|.+++|+|++. +|++++.|++|++||+..+.          ... ..
T Consensus       137 ~-l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~----------~~~-~~  203 (393)
T 1erj_A          137 F-LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQ----------CSL-TL  203 (393)
T ss_dssp             E-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTE----------EEE-EE
T ss_pred             E-EEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCe----------eEE-EE
Confidence            5 99999999999999999999999999999999999999976 79999999999999997531          222 23


Q ss_pred             ccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEE-------eccCCCeEEEEEccCCCEEEEeeCCCcEEEE
Q 004214          378 AHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTF-------RGHKRGIWSVEFSPVDQVVITASGDKTIKIW  449 (768)
Q Consensus       378 ~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iw  449 (768)
                      .+...+.+++|+| ++++|++|+.||.|++||+.++..+..+       .+|...|++++|+|++++|++|+.|++|++|
T Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~w  283 (393)
T 1erj_A          204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW  283 (393)
T ss_dssp             ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            4667899999999 8999999999999999999999887776       5799999999999999999999999999999


Q ss_pred             eCCC------------CceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcC-
Q 004214          450 SISD------------GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK-  516 (768)
Q Consensus       450 d~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-  516 (768)
                      |+.+            +.+...+.+|...|.+++|+|++.+|++|+.||.|++||+.+++++..+.+|...|.+++|++ 
T Consensus       284 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~  363 (393)
T 1erj_A          284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG  363 (393)
T ss_dssp             EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred             ECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCC
Confidence            9975            345678889999999999999999999999999999999999999999999999999999986 


Q ss_pred             -----CCCEEEEEeCCCcEEEEEcCC
Q 004214          517 -----KTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       517 -----~~~~l~s~~~dg~v~vw~~~~  537 (768)
                           ++++|++|+.||.|++|+...
T Consensus       364 ~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          364 SSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             CTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             cCcCCCCCEEEEECCCCcEEECcccc
Confidence                 688999999999999999764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.3e-38  Score=327.37  Aligned_cols=297  Identities=28%  Similarity=0.450  Sum_probs=244.2

Q ss_pred             CCCEEEEEEEcCCCcEEEEEEeeCC-CccEEEEEeCCCcEEEEECCCC-----eeEEEecCccceeEEEEEcCCCCEEEE
Q 004214           18 DGGFCTHYFKGHKGVVSSILFHPDT-DKSLLFSGSDDATVRVWDLLAK-----KCVATLDKHFSRVTSMAITSDGSTLIS   91 (768)
Q Consensus        18 ~~~~~~~~l~gh~~~V~~l~~spd~-~~~~l~sg~~dg~I~iWd~~~~-----~~~~~l~~h~~~V~~l~fs~d~~~L~s   91 (768)
                      ++..+..+|+||.+.|++|+|+|++ ++  |+||+.||+|+|||+.++     .+...+.+|...|.+++|+|++++|++
T Consensus        26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~--l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s  103 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWVTQIATTPQFPDM--ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS  103 (340)
T ss_dssp             CEEEEEEEECCCSSCEEEEEECTTCTTE--EEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             CceEEEEEECCccCCEEEEEEeCCCCCE--EEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence            4555667899999999999999984 44  999999999999998754     357788999999999999999999999


Q ss_pred             EeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCce
Q 004214           92 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC  171 (768)
Q Consensus        92 ~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~  171 (768)
                      ++.|+.|++|+..........                                                           
T Consensus       104 ~~~d~~i~~~~~~~~~~~~~~-----------------------------------------------------------  124 (340)
T 4aow_A          104 GSWDGTLRLWDLTTGTTTRRF-----------------------------------------------------------  124 (340)
T ss_dssp             EETTSEEEEEETTTTEEEEEE-----------------------------------------------------------
T ss_pred             EcccccceEEeecccceeeee-----------------------------------------------------------
Confidence            999999999998764322111                                                           


Q ss_pred             eeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCC
Q 004214          172 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE  251 (768)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  251 (768)
                                                                                                      
T Consensus       125 --------------------------------------------------------------------------------  124 (340)
T 4aow_A          125 --------------------------------------------------------------------------------  124 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE-EEeeecccCcE
Q 004214          252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTGHMGAV  330 (768)
Q Consensus       252 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v  330 (768)
                                                 ..+...+.+..  +.+.+.. +++|+.|+.+++||...... .....+|...+
T Consensus       125 ---------------------------~~~~~~~~~~~--~~~~~~~-l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v  174 (340)
T 4aow_A          125 ---------------------------VGHTKDVLSVA--FSSDNRQ-IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV  174 (340)
T ss_dssp             ---------------------------ECCSSCEEEEE--ECTTSSC-EEEEETTSCEEEECTTSCEEEEECSSSCSSCE
T ss_pred             ---------------------------cCCCCceeEEE--EeecCcc-ceeecCCCeEEEEEeCCCceEEEEeccccCcc
Confidence                                       01111222222  3344554 89999999999999976554 44566899999


Q ss_pred             EEEEEecCCC-cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004214          331 GAVAFSKKLQ-NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL  409 (768)
Q Consensus       331 ~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~  409 (768)
                      ..++|++++. .++++++.|+.|++||+..          ......+.+|...|++++|+|++++|++|+.||.|++||+
T Consensus       175 ~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~----------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~  244 (340)
T 4aow_A          175 SCVRFSPNSSNPIIVSCGWDKLVKVWNLAN----------CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL  244 (340)
T ss_dssp             EEEEECSCSSSCEEEEEETTSCEEEEETTT----------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             cceEEccCCCCcEEEEEcCCCEEEEEECCC----------CceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEe
Confidence            9999998754 3678999999999999984          3456667789999999999999999999999999999999


Q ss_pred             CCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee---------cCCCcEEEEEEEeCCCEEE
Q 004214          410 PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE---------GHTSSVLRASFLTRGAQIV  480 (768)
Q Consensus       410 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~---------~~~~~v~~~~~s~~~~~l~  480 (768)
                      .+.+.+..+.. ...|.+++|+|++.++ +++.|+.|++||++++.++..+.         +|...|++++|+|+|++|+
T Consensus       245 ~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~  322 (340)
T 4aow_A          245 NEGKHLYTLDG-GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF  322 (340)
T ss_dssp             TTTEEEEEEEC-SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEE
T ss_pred             ccCceeeeecC-CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEE
Confidence            99999988875 4689999999987655 55578999999999887776654         6889999999999999999


Q ss_pred             EEeCCCcEEEEECCCCe
Q 004214          481 SCGADGLVKLWTVRTGE  497 (768)
Q Consensus       481 s~~~dg~i~iwd~~~~~  497 (768)
                      +|+.||.|+|||+.+|+
T Consensus       323 sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          323 AGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEETTSCEEEEEEEC--
T ss_pred             EEeCCCEEEEEeCCCcC
Confidence            99999999999999885

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.2e-37  Score=335.90  Aligned_cols=324  Identities=27%  Similarity=0.457  Sum_probs=271.5

Q ss_pred             EEEEEEEcCCCc-EEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEE
Q 004214           21 FCTHYFKGHKGV-VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN   99 (768)
Q Consensus        21 ~~~~~l~gh~~~-V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~   99 (768)
                      .....+.+|.+. ++++.|+  +++  +++|+.||+|++||+.+++.+..+.+|.+.|++++|+|++ +|++++.||.|+
T Consensus       112 ~~~~~l~~h~~~v~~~~~~~--~~~--l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~  186 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQFE--DNY--VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVR  186 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEEE--TTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEE
T ss_pred             cceEEEcCCCCCcEEEEEEC--CCE--EEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEE
Confidence            456789999887 5666664  455  9999999999999999999999999999999999999988 999999999999


Q ss_pred             EEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCc
Q 004214          100 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD  179 (768)
Q Consensus       100 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~  179 (768)
                      +||+.+++++.                                                                     
T Consensus       187 vwd~~~~~~~~---------------------------------------------------------------------  197 (464)
T 3v7d_B          187 VWDIKKGCCTH---------------------------------------------------------------------  197 (464)
T ss_dssp             EEETTTTEEEE---------------------------------------------------------------------
T ss_pred             EEECCCCcEEE---------------------------------------------------------------------
Confidence            99987654221                                                                     


Q ss_pred             eeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEe
Q 004214          180 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT  259 (768)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  259 (768)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (464)
T 3v7d_B          198 --------------------------------------------------------------------------------  197 (464)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce---------------------
Q 004214          260 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC---------------------  318 (768)
Q Consensus       260 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------------  318 (768)
                                       .+.+|...|.++++...+++ .++++|+.||.|++||+.++.                     
T Consensus       198 -----------------~~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (464)
T 3v7d_B          198 -----------------VFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN  259 (464)
T ss_dssp             -----------------EECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGC
T ss_pred             -----------------EECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCC
Confidence                             23345566666653333333 459999999999999998764                     


Q ss_pred             --EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214          319 --CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC  396 (768)
Q Consensus       319 --~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  396 (768)
                        ....+.+|...+.++.  +++. ++++++.||.|++||+..          ........+|...|.+++|+|++++++
T Consensus       260 ~~~~~~~~~~~~~v~~~~--~~~~-~l~~~~~d~~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~  326 (464)
T 3v7d_B          260 PYFVGVLRGHMASVRTVS--GHGN-IVVSGSYDNTLIVWDVAQ----------MKCLYILSGHTDRIYSTIYDHERKRCI  326 (464)
T ss_dssp             TTEEEEECCCSSCEEEEE--EETT-EEEEEETTSCEEEEETTT----------TEEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred             eEEEEEccCccceEEEEc--CCCC-EEEEEeCCCeEEEEECCC----------CcEEEEecCCCCCEEEEEEcCCCCEEE
Confidence              2556778999998885  4433 899999999999999973          335666778999999999999999999


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC
Q 004214          397 TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG  476 (768)
Q Consensus       397 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  476 (768)
                      +|+.||.|++||+.+++.+..+.+|...|.+++|+  +.+|++++.||.|++||+.++.....+. |...+..++|++++
T Consensus       327 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~  403 (464)
T 3v7d_B          327 SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSD  403 (464)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECS
T ss_pred             EEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCC
Confidence            99999999999999999999999999999999998  6899999999999999999988776665 77778889999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEE-eccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214          477 AQIVSCGADGLVKLWTVRTGECIAT-YDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  534 (768)
Q Consensus       477 ~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~  534 (768)
                      +++++|+ ||.|++||+.+++++.. +..|...|++++|+ ....+++++.||.+.+|-
T Consensus       404 ~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          404 NILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             SEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             CEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence            9999998 89999999999999986 66789999999997 445556666777666553

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-40  Score=355.24  Aligned_cols=283  Identities=13%  Similarity=0.118  Sum_probs=217.9

Q ss_pred             ccCCceeEEEEecC-----CCCEEEEEeCCCcEEEEECCCcee-----------eeeeeCCccceEEEeeeeecCCCEEE
Q 004214          237 GYNEEILDLKFLGE-----EEQYLAVATNIEQVQVYDLSSMSC-----------SYVLAGHSEIVLCLDTCALSSGKILI  300 (768)
Q Consensus       237 ~~~~~i~~~~~~~~-----~~~~l~~~~~~~~i~i~d~~~~~~-----------~~~~~~~~~~v~~l~~~~~~~~~~~l  300 (768)
                      ++.+.|.+++|+|.     ++.+||+++.||.|++||+.++..           ...+.+|...|.+++  +.++ . .|
T Consensus       205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~--~s~~-~-~l  280 (524)
T 2j04_B          205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFD--FLSP-T-TV  280 (524)
T ss_dssp             ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEE--ESSS-S-EE
T ss_pred             ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEE--ecCC-C-eE
Confidence            34567788888874     357999999999999999987642           236788999999997  5554 4 49


Q ss_pred             EEEeCCCeEEEEeCCCc-eEEEeeecccCcEEEE--EEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee
Q 004214          301 VTGSKDNSVRLWDSESR-CCVGVGTGHMGAVGAV--AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA  377 (768)
Q Consensus       301 ~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  377 (768)
                      ++|+.||+|++||+.++ .+...+.+|...|.++  +|+|++..+|++++.|++|++||++..          .......
T Consensus       281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~----------~~~~~~~  350 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI----------ATTKTTV  350 (524)
T ss_dssp             EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH----------HHHCEEE
T ss_pred             EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC----------Ccccccc
Confidence            99999999999999876 3455678999999999  567776468999999999999998732          2233334


Q ss_pred             ccCC--CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 004214          378 AHGK--DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS  455 (768)
Q Consensus       378 ~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~  455 (768)
                      +|..  .|.+++|+|+++.+++++.|++|++||++++..+..+.+|...|++++|+|++++|++|+.||+|++||+..+ 
T Consensus       351 ~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-  429 (524)
T 2j04_B          351 SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-  429 (524)
T ss_dssp             EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-
T ss_pred             cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-
Confidence            4543  5889999999999999999999999999999988889999999999999999999999999999999998654 


Q ss_pred             eeEEeec-----CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC-CCeEEEEeccCCCcEEEEEEcCCCC---EEEEEeC
Q 004214          456 CLKTFEG-----HTSSVLRASFLTRGAQIVSCGADGLVKLWTVR-TGECIATYDKHEDKIWALAVGKKTE---MFATGGS  526 (768)
Q Consensus       456 ~~~~~~~-----~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~s~~~~---~l~s~~~  526 (768)
                      .+..+..     +...+.+++|+|+|..+. ..  +.+.+|+.. ++.++.++.+|...|++++|+|+++   .+|+|+.
T Consensus       430 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~--~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~  506 (524)
T 2j04_B          430 LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-ID--SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNS  506 (524)
T ss_dssp             TTTCC------CCCCEEEECBCCSSSCEEE-EC--CCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECT
T ss_pred             hccccccCccceeeeEEEEeccCCCCCeEE-cc--CCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhcc
Confidence            3332221     122577999999998553 22  234445443 5778889999999999999999964   9999999


Q ss_pred             CCcEEEEEcCC
Q 004214          527 DALVNLWHDST  537 (768)
Q Consensus       527 dg~v~vw~~~~  537 (768)
                      ||.|+||++.-
T Consensus       507 ~g~vrlw~l~~  517 (524)
T 2j04_B          507 AGLLTLEYLSL  517 (524)
T ss_dssp             TSEEEEEECSC
T ss_pred             CceEEEEEccc
Confidence            99999999864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.3e-37  Score=318.24  Aligned_cols=297  Identities=22%  Similarity=0.348  Sum_probs=261.0

Q ss_pred             eeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce-----eeeeeeCCccceEEEeeeeecCCCEEEEE
Q 004214          228 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS-----CSYVLAGHSEIVLCLDTCALSSGKILIVT  302 (768)
Q Consensus       228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~~~~l~~  302 (768)
                      .+.+...+.||.+.|.+++|+|.++++|++|+.|+.|++||+.+.+     +...+.+|...|.++.  +.+++.. |++
T Consensus        27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~--~s~dg~~-l~s  103 (340)
T 4aow_A           27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV--ISSDGQF-ALS  103 (340)
T ss_dssp             EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEE--ECTTSSE-EEE
T ss_pred             ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEE--ECCCCCE-EEE
Confidence            4455667899999999999998888999999999999999987653     4567889999999997  7777765 999


Q ss_pred             EeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCC
Q 004214          303 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD  382 (768)
Q Consensus       303 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (768)
                      |+.||.|++|+............+...+..+.+++++. ++++++.|+.+++||+...         .........|...
T Consensus       104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~---------~~~~~~~~~~~~~  173 (340)
T 4aow_A          104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGV---------CKYTVQDESHSEW  173 (340)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSC---------EEEEECSSSCSSC
T ss_pred             EcccccceEEeecccceeeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCC---------ceEEEEeccccCc
Confidence            99999999999999999999999999999999999866 7999999999999998642         2233445678899


Q ss_pred             eEEEEEccCC--CEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214          383 INSLAVAPND--SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF  460 (768)
Q Consensus       383 i~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~  460 (768)
                      +..++|++++  .++++++.|+.|++||+.+++....+.+|..+|++++|+|++++|++|+.||.|++||+.+++++..+
T Consensus       174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  253 (340)
T 4aow_A          174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL  253 (340)
T ss_dssp             EEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             ccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee
Confidence            9999999864  57889999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec---------cCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 004214          461 EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD---------KHEDKIWALAVGKKTEMFATGGSDALVN  531 (768)
Q Consensus       461 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~l~~s~~~~~l~s~~~dg~v~  531 (768)
                      .+ ...|.++.|+|++.++ +++.|+.|++||++++.++..+.         +|...|++++|+|++++|++|+.||.|+
T Consensus       254 ~~-~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~  331 (340)
T 4aow_A          254 DG-GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR  331 (340)
T ss_dssp             EC-SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cC-CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence            84 4689999999987654 56679999999999988777654         5888999999999999999999999999


Q ss_pred             EEEcCCHH
Q 004214          532 LWHDSTAA  539 (768)
Q Consensus       532 vw~~~~~~  539 (768)
                      ||++.++.
T Consensus       332 iW~~~tGt  339 (340)
T 4aow_A          332 VWQVTIGT  339 (340)
T ss_dssp             EEEEEC--
T ss_pred             EEeCCCcC
Confidence            99999875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-37  Score=315.75  Aligned_cols=300  Identities=22%  Similarity=0.307  Sum_probs=256.4

Q ss_pred             ECCC-CEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeC
Q 004214           16 DVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR   94 (768)
Q Consensus        16 d~~~-~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~   94 (768)
                      |..+ .+.++.+.+|.+.|++++| |++.+  |++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.
T Consensus         3 d~~~~~~~~~~l~~h~~~v~~~~~-~~~~~--l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   79 (313)
T 3odt_A            3 DPFTGYQLSATLKGHDQDVRDVVA-VDDSK--VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK   79 (313)
T ss_dssp             --CCCCEEEEEECCCSSCEEEEEE-EETTE--EEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET
T ss_pred             CccccHHHHHHhhCCCCCcEEEEe-cCCCE--EEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC
Confidence            3433 3778899999999999999 88887  999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeee
Q 004214           95 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE  174 (768)
Q Consensus        95 dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~  174 (768)
                      ||.|++|++....                                                                   
T Consensus        80 dg~i~~~~~~~~~-------------------------------------------------------------------   92 (313)
T 3odt_A           80 DTMINGVPLFATS-------------------------------------------------------------------   92 (313)
T ss_dssp             TSCEEEEETTCCT-------------------------------------------------------------------
T ss_pred             CCeEEEEEeeecC-------------------------------------------------------------------
Confidence            9999999985421                                                                   


Q ss_pred             ecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCE
Q 004214          175 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY  254 (768)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  254 (768)
                                                                                                      
T Consensus        93 --------------------------------------------------------------------------------   92 (313)
T 3odt_A           93 --------------------------------------------------------------------------------   92 (313)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEE
Q 004214          255 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA  334 (768)
Q Consensus       255 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  334 (768)
                                      .......+.+|...+.++.  +  ++. ++++++.||.|++||  .+.....+..|...+.+++
T Consensus        93 ----------------~~~~~~~~~~~~~~i~~~~--~--~~~-~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~  149 (313)
T 3odt_A           93 ----------------GEDPLYTLIGHQGNVCSLS--F--QDG-VVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAK  149 (313)
T ss_dssp             ----------------TSCC-CEECCCSSCEEEEE--E--ETT-EEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEE
T ss_pred             ----------------CCCcccchhhcccCEEEEE--e--cCC-EEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEE
Confidence                            0011123445777777776  3  344 499999999999999  7778888899999999999


Q ss_pred             EecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec-cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 004214          335 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV  413 (768)
Q Consensus       335 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  413 (768)
                      +.|....++++++.||.|++||...            ....... |...+.+++|+|++. +++++.||.|++||+++++
T Consensus       150 ~~~~~~~~l~~~~~d~~i~i~d~~~------------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~  216 (313)
T 3odt_A          150 VVSFSENKFLTASADKTIKLWQNDK------------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD  216 (313)
T ss_dssp             EEETTTTEEEEEETTSCEEEEETTE------------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC
T ss_pred             EccCCCCEEEEEECCCCEEEEecCc------------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh
Confidence            9984456899999999999999431            2333344 889999999999998 9999999999999999999


Q ss_pred             eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214          414 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  493 (768)
                      .+..+.+|..+|++++|+|++ .|++++.||.|++||+.+++++..+..|...|.+++|+|+++ +++++.||.|++||+
T Consensus       217 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~  294 (313)
T 3odt_A          217 VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQ  294 (313)
T ss_dssp             EEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred             hhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence            999999999999999999999 588999999999999999999999999999999999999998 667999999999999


Q ss_pred             CCCeEEEEec
Q 004214          494 RTGECIATYD  503 (768)
Q Consensus       494 ~~~~~~~~~~  503 (768)
                      .+++.+....
T Consensus       295 ~~~~~~~~~~  304 (313)
T 3odt_A          295 EKSRWASEDE  304 (313)
T ss_dssp             CGGGCCC---
T ss_pred             CCCceeehhh
Confidence            9887665443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.4e-39  Score=344.60  Aligned_cols=366  Identities=14%  Similarity=0.237  Sum_probs=279.1

Q ss_pred             EEECCCCEEEEEE-EcCCCcEEEEEEee-CCCccEEEEEeCCCcEEEEECCC---Ce---eEEEecCccceeEEEEEcCC
Q 004214           14 VWDVDGGFCTHYF-KGHKGVVSSILFHP-DTDKSLLFSGSDDATVRVWDLLA---KK---CVATLDKHFSRVTSMAITSD   85 (768)
Q Consensus        14 vwd~~~~~~~~~l-~gh~~~V~~l~~sp-d~~~~~l~sg~~dg~I~iWd~~~---~~---~~~~l~~h~~~V~~l~fs~d   85 (768)
                      .|+ .+++.+..+ .+|.+.|++++|+| ++++  |++|+.||+|+|||+.+   +.   ....+ +|.+.|++++|+|+
T Consensus        47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~--l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~  122 (437)
T 3gre_A           47 MGN-LRGKLIATLMENEPNSITSSAVSPGETPY--LITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPN  122 (437)
T ss_dssp             GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCE--EEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTT
T ss_pred             ccc-ccceEEeeeccCCCCceEEEEECCCCCCE--EEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCC
Confidence            477 556778888 89999999999999 8887  99999999999999876   43   23333 49999999999999


Q ss_pred             CCEEEEEeCCCeEEEEECC---CCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEE
Q 004214           86 GSTLISAGRDKVVNLWDLR---DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIV  162 (768)
Q Consensus        86 ~~~L~s~~~dg~i~vWd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i  162 (768)
                      +++|++++.||.|++||+.   +++.......+ .+..+.+.+.+                                   
T Consensus       123 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~-----------------------------------  166 (437)
T 3gre_A          123 FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE-CIRKINLKNFG-----------------------------------  166 (437)
T ss_dssp             SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE-EEEEEEGGGGS-----------------------------------
T ss_pred             CCEEEEEeCCCEEEEEEeccccCCceeeccccc-eeEEEEccCcc-----------------------------------
Confidence            9999999999999999985   44333322211 22222222110                                   


Q ss_pred             EEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCce
Q 004214          163 RMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEI  242 (768)
Q Consensus       163 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i  242 (768)
                                                                                                 +...+
T Consensus       167 ---------------------------------------------------------------------------~~~~~  171 (437)
T 3gre_A          167 ---------------------------------------------------------------------------KNEYA  171 (437)
T ss_dssp             ---------------------------------------------------------------------------SCCCE
T ss_pred             ---------------------------------------------------------------------------cccCc
Confidence                                                                                       22334


Q ss_pred             eEEEEe-cCCCCEEEEEeCCCcEEEEECCCceeeeeeeC--CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE
Q 004214          243 LDLKFL-GEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG--HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC  319 (768)
Q Consensus       243 ~~~~~~-~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  319 (768)
                      .++.+. .+++.++++++.++.|++||+.+++.+..+.+  |...|.+++  +.+++.. |++|+.||.|++||+.++++
T Consensus       172 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~--~s~~~~~-l~s~~~dg~i~iwd~~~~~~  248 (437)
T 3gre_A          172 VRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSIC--IDEECCV-LILGTTRGIIDIWDIRFNVL  248 (437)
T ss_dssp             EEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEE--ECTTSCE-EEEEETTSCEEEEETTTTEE
T ss_pred             eEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEE--ECCCCCE-EEEEcCCCeEEEEEcCCccE
Confidence            444432 35778999999999999999999999999988  899999997  6666655 99999999999999999999


Q ss_pred             EEeee-cccCcEEEEEEecC---CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE
Q 004214          320 VGVGT-GHMGAVGAVAFSKK---LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV  395 (768)
Q Consensus       320 ~~~~~-~~~~~v~~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  395 (768)
                      +..+. .|..+|.+++++|.   ...++++++.||.|++||+..          ......+..|...+..+.|+|+++.+
T Consensus       249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l  318 (437)
T 3gre_A          249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK----------GHCQYAFINSDEQPSMEHFLPIEKGL  318 (437)
T ss_dssp             EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT----------TEEEEEEESSSSCCCGGGGSCBCSSG
T ss_pred             EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC----------CcEEEEEEcCCCCCccceeccccccc
Confidence            98876 78889999977653   234899999999999999974          34566777888888888999987665


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEec--cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC---cEEEE
Q 004214          396 CTGSQDRTACVWRLPDLVSVVTFRG--HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS---SVLRA  470 (768)
Q Consensus       396 ~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~  470 (768)
                          .+..              +.+  |...|++++|+ ++++|++|+.|+.|++||+.++++...+.+|..   .+...
T Consensus       319 ----~~~~--------------~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  379 (437)
T 3gre_A          319 ----EELN--------------FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPT  379 (437)
T ss_dssp             ----GGCC--------------CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEE
T ss_pred             ----ccce--------------ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEE
Confidence                1111              344  88999999999 789999999999999999999999999988643   44555


Q ss_pred             EEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 004214          471 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK--TEMFATGGSDALVNLWH  534 (768)
Q Consensus       471 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~--~~~l~s~~~dg~v~vw~  534 (768)
                      .++++..+++..        |+...+........|.+.|++++|+++  +.+|++|+.||.|+||+
T Consensus       380 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          380 QVTANLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEETTEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             EeecceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            666665555443        334444555666779999999999998  78999999999999995

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.8e-37  Score=319.80  Aligned_cols=308  Identities=19%  Similarity=0.290  Sum_probs=257.8

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCee---EEEec--Cccce
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC---VATLD--KHFSR   76 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~---~~~l~--~h~~~   76 (768)
                      ++|++..++.+.+|+...........+|.+.|++++|+|+++.  +++++ ||.|++||+.+++.   +..+.  +|...
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   99 (337)
T 1gxr_A           23 MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRH--VYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNY   99 (337)
T ss_dssp             EEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSE--EEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSB
T ss_pred             EEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcE--EEEcC-CCeEEEEECCCCCceeeeecccccCCCCc
Confidence            4566666666677766665556666689999999999999887  88888 99999999987653   33333  79999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEe
Q 004214           77 VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITV  156 (768)
Q Consensus        77 V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (768)
                      |.+++|+|++++|++++.|+.|++||+.+++..                                               
T Consensus       100 v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-----------------------------------------------  132 (337)
T 1gxr_A          100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-----------------------------------------------  132 (337)
T ss_dssp             EEEEEECTTSSEEEEEESSSEEEEEECCCC--E-----------------------------------------------
T ss_pred             EEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-----------------------------------------------
Confidence            999999999999999999999999998654210                                               


Q ss_pred             eCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeec
Q 004214          157 GERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV  236 (768)
Q Consensus       157 ~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~  236 (768)
                                                                                                      
T Consensus       133 --------------------------------------------------------------------------------  132 (337)
T 1gxr_A          133 --------------------------------------------------------------------------------  132 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC
Q 004214          237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES  316 (768)
Q Consensus       237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~  316 (768)
                                                           ....+..|...+.++.  +.+++.. +++++.||.|++||+.+
T Consensus       133 -------------------------------------~~~~~~~~~~~i~~~~--~~~~~~~-l~~~~~dg~v~~~d~~~  172 (337)
T 1gxr_A          133 -------------------------------------IKAELTSSAPACYALA--ISPDSKV-CFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             -------------------------------------EEEEEECSSSCEEEEE--ECTTSSE-EEEEETTSCEEEEETTT
T ss_pred             -------------------------------------eeeecccCCCceEEEE--ECCCCCE-EEEEeCCCcEEEEeCCC
Confidence                                                 0012334555666665  5565555 88999999999999999


Q ss_pred             ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214          317 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC  396 (768)
Q Consensus       317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  396 (768)
                      ++.+..+..|...+.+++|+|++. ++++++.||.|++||+....          .. ....+...+.+++|+|++++++
T Consensus       173 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~----------~~-~~~~~~~~v~~~~~s~~~~~l~  240 (337)
T 1gxr_A          173 QTLVRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGR----------QL-QQHDFTSQIFSLGYCPTGEWLA  240 (337)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTE----------EE-EEEECSSCEEEEEECTTSSEEE
T ss_pred             CceeeeeecccCceEEEEECCCCC-EEEEEecCCcEEEEECCCCc----------eE-eeecCCCceEEEEECCCCCEEE
Confidence            999999999999999999999965 89999999999999997531          22 2235778899999999999999


Q ss_pred             EEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC
Q 004214          397 TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG  476 (768)
Q Consensus       397 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  476 (768)
                      +++.|+.|++||+.+++.. .+..|..+|.+++|+|++++|++++.||.|++||+.+++.+.... |...+++++|+|++
T Consensus       241 ~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~  318 (337)
T 1gxr_A          241 VGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDD  318 (337)
T ss_dssp             EEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTS
T ss_pred             EEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec-CCCcEEEEEECCCC
Confidence            9999999999999988754 577899999999999999999999999999999999998886554 88999999999999


Q ss_pred             CEEEEEeCCCcEEEEEC
Q 004214          477 AQIVSCGADGLVKLWTV  493 (768)
Q Consensus       477 ~~l~s~~~dg~i~iwd~  493 (768)
                      ++|++++.||.|++|++
T Consensus       319 ~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          319 KYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CEEEEEETTSCEEEEEE
T ss_pred             CEEEEecCCCeEEEEEE
Confidence            99999999999999996

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.1e-37  Score=328.86  Aligned_cols=298  Identities=19%  Similarity=0.254  Sum_probs=262.3

Q ss_pred             eEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce------eeeeeeCCccceEEEeeeeecC---CC--
Q 004214          229 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS------CSYVLAGHSEIVLCLDTCALSS---GK--  297 (768)
Q Consensus       229 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~------~~~~~~~~~~~v~~l~~~~~~~---~~--  297 (768)
                      ......+.+|.+.|.+++|++   +++++++.||.|++|++.++.      ....+.+|...|.++.  +.++   ++  
T Consensus         6 ~~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~g~~   80 (397)
T 1sq9_A            6 IATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD--VLQAIERDAFE   80 (397)
T ss_dssp             EEEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEE--EEEEEETTTEE
T ss_pred             hhhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEE--EecccccCCcc
Confidence            345567789999999999976   799999999999999999988      7888899999999998  6665   13  


Q ss_pred             -EEEEEEeCCCeEEEEeCCCceE-----EEeeecc-----cCcEEEEEEe----cCCCcE-EEEEeCCCeEEEEeCCC--
Q 004214          298 -ILIVTGSKDNSVRLWDSESRCC-----VGVGTGH-----MGAVGAVAFS----KKLQNF-LVSGSSDHTIKVWSFDG--  359 (768)
Q Consensus       298 -~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~~-l~s~~~dg~i~iwd~~~--  359 (768)
                       .+|++++.||.|++||+.++..     ...+..|     ...|.+++|+    |++. + +++++.||.|++||+..  
T Consensus        81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~  159 (397)
T 1sq9_A           81 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS-HRLVATDVKGTTYIWKFHPFA  159 (397)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C-EEEEEEETTSCEEEEEEESSS
T ss_pred             ccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc-eEEEEEeCCCcEEEEeCCccc
Confidence             4599999999999999988876     7888888     5999999999    8866 6 99999999999999985  


Q ss_pred             ----CCCCCccccccceeeEe-------eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec---c---C
Q 004214          360 ----LSDDAEQPMNLKAKAVV-------AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---H---K  422 (768)
Q Consensus       360 ----~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~---~  422 (768)
                          ....     .......+       ..|...|.+++|+|++ ++++++.||.|++||+++++.+..+..   |   .
T Consensus       160 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~  233 (397)
T 1sq9_A          160 DESNSLTL-----NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS  233 (397)
T ss_dssp             SHHHHTTT-----CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC
T ss_pred             ccccccee-----eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccC
Confidence                2211     11111133       4478899999999999 999999999999999999999999998   9   9


Q ss_pred             CCeEEEEEccCCCEEEEeeCC---CcEEEEeCCCCceeEEeec-------------CCCcEEEEEEEeCCCEEEEEeCCC
Q 004214          423 RGIWSVEFSPVDQVVITASGD---KTIKIWSISDGSCLKTFEG-------------HTSSVLRASFLTRGAQIVSCGADG  486 (768)
Q Consensus       423 ~~v~~v~~s~~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~s~~~dg  486 (768)
                      .+|.+++|+|++++|++++.|   +.|++||+.+++++..+.+             |...|.+++|+|++++|++++.||
T Consensus       234 ~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  313 (397)
T 1sq9_A          234 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG  313 (397)
T ss_dssp             CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred             CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC
Confidence            999999999999999999999   9999999999999999998             999999999999999999999999


Q ss_pred             cEEEEECCCCeEEEEec------cC---------------CCcEEEEEEcCCC----------CEEEEEeCCCcEEEEEc
Q 004214          487 LVKLWTVRTGECIATYD------KH---------------EDKIWALAVGKKT----------EMFATGGSDALVNLWHD  535 (768)
Q Consensus       487 ~i~iwd~~~~~~~~~~~------~~---------------~~~v~~l~~s~~~----------~~l~s~~~dg~v~vw~~  535 (768)
                      .|++||+.+++++..+.      .|               ...|++++|+|++          ++|++++.||.|++|++
T Consensus       314 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~  393 (397)
T 1sq9_A          314 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  393 (397)
T ss_dssp             EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             eEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence            99999999999999998      88               9999999999998          79999999999999998


Q ss_pred             CCH
Q 004214          536 STA  538 (768)
Q Consensus       536 ~~~  538 (768)
                      .++
T Consensus       394 ~~g  396 (397)
T 1sq9_A          394 AGG  396 (397)
T ss_dssp             EC-
T ss_pred             CCC
Confidence            875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1e-36  Score=330.74  Aligned_cols=324  Identities=23%  Similarity=0.350  Sum_probs=264.1

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA   81 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~   81 (768)
                      +||+|+.||.|++||+.+++.+..+.+|.+.|++++|+|++   .+++|+.||+|++||+.+++++..+.+|.+.|.+++
T Consensus       134 ~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~  210 (464)
T 3v7d_B          134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD  210 (464)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEE
Confidence            68999999999999999999999999999999999999986   499999999999999999999999999999999999


Q ss_pred             Ec--CCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCC
Q 004214           82 IT--SDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER  159 (768)
Q Consensus        82 fs--~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (768)
                      |+  +++++|++++.|+.|++||+.++................                                     
T Consensus       211 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-------------------------------------  253 (464)
T 3v7d_B          211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF-------------------------------------  253 (464)
T ss_dssp             EEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEE-------------------------------------
T ss_pred             EecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe-------------------------------------
Confidence            98  588999999999999999998765433221111000000                                     


Q ss_pred             cEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccC
Q 004214          160 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYN  239 (768)
Q Consensus       160 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~  239 (768)
                                                            ..|....                         .......+|.
T Consensus       254 --------------------------------------~~~~~~~-------------------------~~~~~~~~~~  270 (464)
T 3v7d_B          254 --------------------------------------HTPEENP-------------------------YFVGVLRGHM  270 (464)
T ss_dssp             --------------------------------------SCGGGCT-------------------------TEEEEECCCS
T ss_pred             --------------------------------------eccCCCe-------------------------EEEEEccCcc
Confidence                                                  0010000                         0112344556


Q ss_pred             CceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE
Q 004214          240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC  319 (768)
Q Consensus       240 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  319 (768)
                      ..+.++.   +++.++++++.++.|++||+.+++.+..+.+|...|.++.  +.+++.. +++|+.||.|++||+.++++
T Consensus       271 ~~v~~~~---~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~sg~~dg~i~vwd~~~~~~  344 (464)
T 3v7d_B          271 ASVRTVS---GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI--YDHERKR-CISASMDTTIRIWDLENGEL  344 (464)
T ss_dssp             SCEEEEE---EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE--EETTTTE-EEEEETTSCEEEEETTTTEE
T ss_pred             ceEEEEc---CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEE--EcCCCCE-EEEEeCCCcEEEEECCCCcE
Confidence            6666663   4678999999999999999999999999999999999997  7777776 99999999999999999999


Q ss_pred             EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe
Q 004214          320 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS  399 (768)
Q Consensus       320 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  399 (768)
                      +..+.+|...|.++++++   .++++++.||.|++||+....           ......+...+..++|+|+++++++|+
T Consensus       345 ~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~  410 (464)
T 3v7d_B          345 MYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYS-----------RKFSYHHTNLSAITTFYVSDNILVSGS  410 (464)
T ss_dssp             EEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCC-----------EEEEEECTTCCCEEEEEECSSEEEEEE
T ss_pred             EEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCc-----------eeeeecCCCCccEEEEEeCCCEEEEec
Confidence            999999999999999985   389999999999999997531           122234677788899999999999998


Q ss_pred             CCCcEEEEeCCCCceEEE-EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEe
Q 004214          400 QDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS  450 (768)
Q Consensus       400 ~dg~i~i~d~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd  450 (768)
                       ||.|++||+.+++.+.. +.+|...|++++|+ .+.++++++.||.+.+|-
T Consensus       411 -dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          411 -ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             -TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             -CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence             89999999999998875 66789999999998 345566666677655543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-36  Score=319.35  Aligned_cols=309  Identities=18%  Similarity=0.251  Sum_probs=256.4

Q ss_pred             CEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEE
Q 004214           20 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN   99 (768)
Q Consensus        20 ~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~   99 (768)
                      ......+.+|.+.|++++|+|++++  |++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.||.|+
T Consensus        22 ~~~~~~l~~h~~~v~~~~~s~~~~~--l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~   99 (369)
T 3zwl_B           22 HMKAIKLTGHERPLTQVKYNKEGDL--LFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK   99 (369)
T ss_dssp             SEEEEEEECCSSCEEEEEECTTSCE--EEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             ccccEEEEEeeceEEEEEEcCCCCE--EEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            3456779999999999999999887  99999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCC-----cEEEEEEcCCceeee
Q 004214          100 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER-----GIVRMWNADSACLYE  174 (768)
Q Consensus       100 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~i~iwd~~~~~~~~  174 (768)
                      +||+.+++++..+.....+..++|+|++.                       .+++++.+     |.|++|++..+....
T Consensus       100 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------------~l~~~~~~~~~~~g~i~~~d~~~~~~~~  156 (369)
T 3zwl_B          100 LWDVSNGQCVATWKSPVPVKRVEFSPCGN-----------------------YFLAILDNVMKNPGSINIYEIERDSATH  156 (369)
T ss_dssp             EEETTTCCEEEEEECSSCEEEEEECTTSS-----------------------EEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred             EEECCCCcEEEEeecCCCeEEEEEccCCC-----------------------EEEEecCCccCCCCEEEEEEecCCccce
Confidence            99999999988888777777888877765                       56666666     677777654431000


Q ss_pred             ecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCE
Q 004214          175 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY  254 (768)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  254 (768)
                                                                                                     .
T Consensus       157 -------------------------------------------------------------------------------~  157 (369)
T 3zwl_B          157 -------------------------------------------------------------------------------E  157 (369)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             -------------------------------------------------------------------------------e
Confidence                                                                                           0


Q ss_pred             EEEEeCCCcEEEEECCCceeeeeeeCCcc--ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-ceEEEeeecccCcEE
Q 004214          255 LAVATNIEQVQVYDLSSMSCSYVLAGHSE--IVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGHMGAVG  331 (768)
Q Consensus       255 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~  331 (768)
                      +            ..........+..|..  .+.++.  +.+++.. +++++.||.|++||+.+ +..+..+..|...|.
T Consensus       158 ~------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  222 (369)
T 3zwl_B          158 L------------TKVSEEPIHKIITHEGLDAATVAG--WSTKGKY-IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSIS  222 (369)
T ss_dssp             E------------EEECSSCSEEEECCTTCCCEEEEE--ECGGGCE-EEEEETTSEEEEEETTTTTEEEEEEECCSSCEE
T ss_pred             e------------cccccceeeeccCCcCccceeEEE--EcCCCCE-EEEEcCCCEEEEEECCCCcEeEEEEecCCCcee
Confidence            0            0000111223334444  777776  6666665 99999999999999998 788999999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC---------
Q 004214          332 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR---------  402 (768)
Q Consensus       332 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---------  402 (768)
                      +++|+|++. +|++++.||.|++||+....          ..... .+...+.+++|+|+++++++++.++         
T Consensus       223 ~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  290 (369)
T 3zwl_B          223 DMQFSPDLT-YFITSSRDTNSFLVDVSTLQ----------VLKKY-ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSA  290 (369)
T ss_dssp             EEEECTTSS-EEEEEETTSEEEEEETTTCC----------EEEEE-ECSSCEEEEEECSSSSEEEEEECCC---------
T ss_pred             EEEECCCCC-EEEEecCCceEEEEECCCCc----------eeeee-cCCCCceeEEecCCCceEEEeecCCCceEEEEec
Confidence            999999966 89999999999999997542          22222 2778899999999999999999988         


Q ss_pred             -----cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEE
Q 004214          403 -----TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT  459 (768)
Q Consensus       403 -----~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~  459 (768)
                           .+++||..+++.+..+.+|...|++++|+|++++|++++.||.|++|++..+.....
T Consensus       291 ~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~  352 (369)
T 3zwl_B          291 NEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFK  352 (369)
T ss_dssp             ----CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCC
T ss_pred             CCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhH
Confidence                 899999999999999999999999999999999999999999999999987654433

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-36  Score=316.52  Aligned_cols=304  Identities=19%  Similarity=0.249  Sum_probs=271.3

Q ss_pred             EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214          230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV  309 (768)
Q Consensus       230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i  309 (768)
                      .....+.+|...|.+++|++ ++.++++++.+|.|++||+.+++....+.+|...|.+++  +.+++.. |++++.||.|
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~--~~~~~~~-l~s~~~dg~i   98 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSID--VDCFTKY-CVTGSADYSI   98 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEE--ECTTSSE-EEEEETTTEE
T ss_pred             cccEEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEE--EcCCCCE-EEEEeCCCeE
Confidence            34466789999999999986 788999999999999999999999999999999999997  6676665 9999999999


Q ss_pred             EEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC-----CeEEEEeCCCCCCCCccc-cccceeeEeeccCC--
Q 004214          310 RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQP-MNLKAKAVVAAHGK--  381 (768)
Q Consensus       310 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~--  381 (768)
                      ++||+.+++.+..+. +...+.+++|+|++. ++++++.+     |.|.+||+.......... ...........|..  
T Consensus        99 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (369)
T 3zwl_B           99 KLWDVSNGQCVATWK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLD  176 (369)
T ss_dssp             EEEETTTCCEEEEEE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCC
T ss_pred             EEEECCCCcEEEEee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcc
Confidence            999999999988887 889999999999976 78889888     999999997654322111 11123334455555  


Q ss_pred             CeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214          382 DINSLAVAPNDSLVCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF  460 (768)
Q Consensus       382 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~  460 (768)
                      .+.+++|+|+++++++++.||.|++||+.+ ...+..+..|...|.+++|+|++++|++++.|+.|++||+.+++++..+
T Consensus       177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  256 (369)
T 3zwl_B          177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY  256 (369)
T ss_dssp             CEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee
Confidence            899999999999999999999999999998 7888899999999999999999999999999999999999999999998


Q ss_pred             ecCCCcEEEEEEEeCCCEEEEEeCCC--------------cEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC
Q 004214          461 EGHTSSVLRASFLTRGAQIVSCGADG--------------LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS  526 (768)
Q Consensus       461 ~~~~~~v~~~~~s~~~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~  526 (768)
                      . +...+..++|+|+++++++++.++              .+++||..+++++..+.+|...|++++|+|++++|++++.
T Consensus       257 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  335 (369)
T 3zwl_B          257 E-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE  335 (369)
T ss_dssp             E-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             c-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcC
Confidence            8 888999999999999999999988              8999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEcCCHHH
Q 004214          527 DALVNLWHDSTAAE  540 (768)
Q Consensus       527 dg~v~vw~~~~~~~  540 (768)
                      ||.|++|++.++..
T Consensus       336 dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          336 DGFIRLHHFEKSYF  349 (369)
T ss_dssp             TSEEEEEEECHHHH
T ss_pred             CCeEEEEECccccc
Confidence            99999999987643

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.6e-37  Score=332.36  Aligned_cols=332  Identities=14%  Similarity=0.203  Sum_probs=273.3

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA   81 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~   81 (768)
                      +||+|+.||.|++||+.++.....+.+| ..+...+|+|+++.  |++|+.||.|++||+.+++.+..+.+|.+.|++++
T Consensus        70 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~  146 (420)
T 3vl1_A           70 HLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRR--FILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLK  146 (420)
T ss_dssp             TEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCE--EEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEE
T ss_pred             eEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCE--EEEEECCCCEEEEeCCCcceeeecccccCccEEEE
Confidence            5889999999999999988877667766 55666688999887  99999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcE
Q 004214           82 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI  161 (768)
Q Consensus        82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  161 (768)
                      |+|++++|++++.|+.|++||+.+++.+..                                                  
T Consensus       147 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~--------------------------------------------------  176 (420)
T 3vl1_A          147 FFPSGEALISSSQDMQLKIWSVKDGSNPRT--------------------------------------------------  176 (420)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCCCEE--------------------------------------------------
T ss_pred             ECCCCCEEEEEeCCCeEEEEeCCCCcCceE--------------------------------------------------
Confidence            999999999999999999999987543222                                                  


Q ss_pred             EEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCc
Q 004214          162 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE  241 (768)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (768)
                                                                                               +.+|...
T Consensus       177 -------------------------------------------------------------------------~~~h~~~  183 (420)
T 3vl1_A          177 -------------------------------------------------------------------------LIGHRAT  183 (420)
T ss_dssp             -------------------------------------------------------------------------EECCSSC
T ss_pred             -------------------------------------------------------------------------EcCCCCc
Confidence                                                                                     2245667


Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeC---CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214          242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG---HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC  318 (768)
Q Consensus       242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  318 (768)
                      |.+++|++ ++.++++++.|+.|++||+.+++....+..   |...+.++.  +.+.+..         .          
T Consensus       184 v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~---------~----------  241 (420)
T 3vl1_A          184 VTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIA--LFVGTDR---------Q----------  241 (420)
T ss_dssp             EEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEE--EEECCCS---------S----------
T ss_pred             EEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEE--EecCCcc---------e----------
Confidence            88888885 678999999999999999999998888875   556666665  3322221         0          


Q ss_pred             EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC-EEEE
Q 004214          319 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS-LVCT  397 (768)
Q Consensus       319 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~  397 (768)
                         ....+...+.+++|+|++. ++++++.||.|++||+....         ........|...|.+++|+|++. +|++
T Consensus       242 ---~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~~  308 (420)
T 3vl1_A          242 ---LHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKE---------QTIQLPSKFTCSCNSLTVDGNNANYIYA  308 (420)
T ss_dssp             ---CGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCC---------EEEEECCTTSSCEEEEEECSSCTTEEEE
T ss_pred             ---eeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECCCCc---------eeEEcccccCCCceeEEEeCCCCCEEEE
Confidence               2344677889999999966 89999999999999997542         12333346888999999999998 9999


Q ss_pred             EeCCCcEEEEeCCCCce-EEEEec-cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC---------ceeEEeecCCCc
Q 004214          398 GSQDRTACVWRLPDLVS-VVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG---------SCLKTFEGHTSS  466 (768)
Q Consensus       398 ~~~dg~i~i~d~~~~~~-~~~~~~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~---------~~~~~~~~~~~~  466 (768)
                      |+.||.|++||+++++. +..+.+ |...|+++.+ |++++|++++.|+.|++||+...         .....+.+|...
T Consensus       309 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (420)
T 3vl1_A          309 GYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDA  387 (420)
T ss_dssp             EETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCC
T ss_pred             EeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcc
Confidence            99999999999998754 677776 6677888855 57889999999999999998773         233456678999


Q ss_pred             EEEEEEEeCCC---EEEEEeCCCcEEEEECCC
Q 004214          467 VLRASFLTRGA---QIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       467 v~~~~~s~~~~---~l~s~~~dg~i~iwd~~~  495 (768)
                      |.+++|+|++.   .+++++.+|.+.+|++.+
T Consensus       388 v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          388 VSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             CCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             eEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            99999999999   888888999999999864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=7.1e-37  Score=348.58  Aligned_cols=294  Identities=21%  Similarity=0.321  Sum_probs=255.7

Q ss_pred             EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc-----eeeeeeeCCccceEEEeeeeecCCCEEEEEEe
Q 004214          230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-----SCSYVLAGHSEIVLCLDTCALSSGKILIVTGS  304 (768)
Q Consensus       230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~  304 (768)
                      .....+.+|.+.|.+++|++++..+|++|+.|+.|++|++.+.     .....+.+|...|.+++  +.+++.. |++|+
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~--~s~~g~~-l~sgs  449 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV--LSSDGQF-ALSGS  449 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEE--ECTTSSE-EEEEE
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEE--ECCCCCE-EEEEe
Confidence            4445678999999999999888899999999999999998763     34567899999999997  7777765 99999


Q ss_pred             CCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeE
Q 004214          305 KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN  384 (768)
Q Consensus       305 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~  384 (768)
                      .||.|++||+.++.....+.+|...|.+++|+|++. ++++++.|++|++||+....       ..........|...|.
T Consensus       450 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~-------~~~~~~~~~~h~~~v~  521 (694)
T 3dm0_A          450 WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGEC-------KYTISEGGEGHRDWVS  521 (694)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCE-------EEEECSSTTSCSSCEE
T ss_pred             CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCc-------ceeeccCCCCCCCcEE
Confidence            999999999999999999999999999999999976 69999999999999975321       0001111246888999


Q ss_pred             EEEEccCC--CEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec
Q 004214          385 SLAVAPND--SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG  462 (768)
Q Consensus       385 ~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~  462 (768)
                      +++|+|++  ..+++|+.|++|++||+.+++....+.+|...|++++|+|++++|++|+.||+|++||+.+++++..+. 
T Consensus       522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-  600 (694)
T 3dm0_A          522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-  600 (694)
T ss_dssp             EEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-
T ss_pred             EEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-
Confidence            99999986  689999999999999999999999999999999999999999999999999999999999999988887 


Q ss_pred             CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCC-------------------CcEEEEEEcCCCCEEEE
Q 004214          463 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE-------------------DKIWALAVGKKTEMFAT  523 (768)
Q Consensus       463 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------~~v~~l~~s~~~~~l~s  523 (768)
                      +...|.+++|+|++.+|++++ ++.|++||+.+++++..+..+.                   ..+++++|+|+|++|++
T Consensus       601 ~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~s  679 (694)
T 3dm0_A          601 ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFS  679 (694)
T ss_dssp             CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEE
T ss_pred             CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEE
Confidence            456899999999998888776 4569999999999888775332                   13789999999999999


Q ss_pred             EeCCCcEEEEEcC
Q 004214          524 GGSDALVNLWHDS  536 (768)
Q Consensus       524 ~~~dg~v~vw~~~  536 (768)
                      |+.||.|++|++.
T Consensus       680 gs~Dg~i~iW~i~  692 (694)
T 3dm0_A          680 GYTDGVIRVWGIG  692 (694)
T ss_dssp             EETTSEEEEEEC-
T ss_pred             EcCCCeEEEEecc
Confidence            9999999999975

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.6e-36  Score=323.36  Aligned_cols=300  Identities=26%  Similarity=0.459  Sum_probs=264.1

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA   81 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~   81 (768)
                      +||+|+.||.|++||+.+++++..+.+|.+.|++++|++  ..  +++|+.||+|++||+.+++++..+.+|...|.+++
T Consensus       131 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~--l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~  206 (445)
T 2ovr_B          131 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NI--IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH  206 (445)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC--CE--EEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEE
Confidence            689999999999999999999999999999999999984  44  99999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcE
Q 004214           82 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI  161 (768)
Q Consensus        82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  161 (768)
                      |+  +++|++++.||.|++||+.+++++..+                                                 
T Consensus       207 ~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~-------------------------------------------------  235 (445)
T 2ovr_B          207 LH--EKRVVSGSRDATLRVWDIETGQCLHVL-------------------------------------------------  235 (445)
T ss_dssp             EE--TTEEEEEETTSEEEEEESSSCCEEEEE-------------------------------------------------
T ss_pred             ec--CCEEEEEeCCCEEEEEECCCCcEEEEE-------------------------------------------------
Confidence            96  678999999999999999876543222                                                 


Q ss_pred             EEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCc
Q 004214          162 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE  241 (768)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (768)
                                                                                                .+|...
T Consensus       236 --------------------------------------------------------------------------~~~~~~  241 (445)
T 2ovr_B          236 --------------------------------------------------------------------------MGHVAA  241 (445)
T ss_dssp             --------------------------------------------------------------------------ECCSSC
T ss_pred             --------------------------------------------------------------------------cCCccc
Confidence                                                                                      234456


Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE
Q 004214          242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG  321 (768)
Q Consensus       242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  321 (768)
                      +.++.|   ++.++++++.+|.|++||+.+++....+.+|...+.++.  +  ++.. +++|+.||.|++||+.+++.+.
T Consensus       242 v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~--~~~~-l~~~~~d~~i~i~d~~~~~~~~  313 (445)
T 2ovr_B          242 VRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--F--DGIH-VVSGSLDTSIRVWDVETGNCIH  313 (445)
T ss_dssp             EEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--E--CSSE-EEEEETTSCEEEEETTTCCEEE
T ss_pred             EEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEE--E--CCCE-EEEEeCCCeEEEEECCCCCEEE
Confidence            677776   567899999999999999999999999999999999997  3  4554 9999999999999999999999


Q ss_pred             eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec---cCCCeEEEEEccCCCEEEEE
Q 004214          322 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA---HGKDINSLAVAPNDSLVCTG  398 (768)
Q Consensus       322 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~  398 (768)
                      .+.+|...+.++.++++   ++++++.||.|++||+..+.          ....+..   |...|.+++|+  ++++++|
T Consensus       314 ~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~v~~~~~~--~~~l~s~  378 (445)
T 2ovr_B          314 TLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTGQ----------CLQTLQGPNKHQSAVTCLQFN--KNFVITS  378 (445)
T ss_dssp             EECCCCSCEEEEEEETT---EEEEEETTSCEEEEETTTCC----------EEEEECSTTSCSSCEEEEEEC--SSEEEEE
T ss_pred             EEcCCcccEEEEEEeCC---EEEEEeCCCeEEEEECCCCc----------EEEEEccCCCCCCCEEEEEEC--CCEEEEE
Confidence            99999999999988643   89999999999999997432          3333443   88899999996  5799999


Q ss_pred             eCCCcEEEEeCCCCceEEEE-----eccCCCeEEEEEccCCCEEEEeeCCCc----EEEEeCCC
Q 004214          399 SQDRTACVWRLPDLVSVVTF-----RGHKRGIWSVEFSPVDQVVITASGDKT----IKIWSISD  453 (768)
Q Consensus       399 ~~dg~i~i~d~~~~~~~~~~-----~~~~~~v~~v~~s~~~~~l~t~~~d~~----i~iwd~~~  453 (768)
                      +.||.|++||+.+++.+..+     .+|...|++++|+|++.++++|+.||+    |.+||+..
T Consensus       379 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          379 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             ETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             eCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            99999999999999998888     468889999999999999999999998    99999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=7.6e-38  Score=333.54  Aligned_cols=371  Identities=17%  Similarity=0.248  Sum_probs=266.7

Q ss_pred             CCCcEEEEECCCCeeEEEecCccceeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCc
Q 004214           52 DDATVRVWDLLAKKCVATLDKHFSRVTSMAITS-DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAF  130 (768)
Q Consensus        52 ~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~-d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  130 (768)
                      .++.+++|++..++....+.+|.+.|++++|+| ++++|++++.||.|++||+.++.....+.....             
T Consensus        21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-------------   87 (408)
T 4a11_B           21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV-------------   87 (408)
T ss_dssp             HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE-------------
T ss_pred             ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc-------------
Confidence            345688999988889999999999999999999 999999999999999999987654333211000             


Q ss_pred             cccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEe
Q 004214          131 DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA  210 (768)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  210 (768)
                                                                                                      
T Consensus        88 --------------------------------------------------------------------------------   87 (408)
T 4a11_B           88 --------------------------------------------------------------------------------   87 (408)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEee
Q 004214          211 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDT  290 (768)
Q Consensus       211 dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~  290 (768)
                                       .........+|...|.+++|++.++.++++++.++.|++||+.+++....+. +...+.++.+
T Consensus        88 -----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~  149 (408)
T 4a11_B           88 -----------------CSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHM  149 (408)
T ss_dssp             -----------------EEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEE
T ss_pred             -----------------ccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEe
Confidence                             0000011235778899999998788999999999999999999999887776 6777888874


Q ss_pred             eeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcc----
Q 004214          291 CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ----  366 (768)
Q Consensus       291 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----  366 (768)
                      .....+..++++|+.||.|++||+.++..+..+.+|...|.+++|+|++..++++++.||.|++||++........    
T Consensus       150 ~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~  229 (408)
T 4a11_B          150 SPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH  229 (408)
T ss_dssp             CSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT
T ss_pred             ecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc
Confidence            4444444569999999999999999999999999999999999999998878999999999999999865311100    


Q ss_pred             --ccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC-----CCeEEEEEccCCCEEEE
Q 004214          367 --PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK-----RGIWSVEFSPVDQVVIT  439 (768)
Q Consensus       367 --~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~v~~s~~~~~l~t  439 (768)
                        ............|...|.+++|+|++++|++++.||.|++||+.+++....+.++.     ..+........+..+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (408)
T 4a11_B          230 NGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF  309 (408)
T ss_dssp             TTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE
T ss_pred             ccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEE
Confidence              01111222235688999999999999999999999999999999887655443321     12222222334556777


Q ss_pred             eeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcC-CC
Q 004214          440 ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK-KT  518 (768)
Q Consensus       440 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-~~  518 (768)
                      ++.|+.|++||+.+++++..+.+|...|++++|+|++++|++++.||.|++||+.+++++.....+...   ..+.+ ..
T Consensus       310 ~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~  386 (408)
T 4a11_B          310 VPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFE  386 (408)
T ss_dssp             EEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------
T ss_pred             EecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccc
Confidence            778899999999999999999999999999999999999999999999999999999888766533322   22333 34


Q ss_pred             CEEEEEeCCCcEEEEEcC
Q 004214          519 EMFATGGSDALVNLWHDS  536 (768)
Q Consensus       519 ~~l~s~~~dg~v~vw~~~  536 (768)
                      ..+.+.+.++.+++|+..
T Consensus       387 ~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          387 DAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             ------------------
T ss_pred             eeecccCccCceeecCCc
Confidence            456677889999999754

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.2e-37  Score=324.62  Aligned_cols=302  Identities=16%  Similarity=0.208  Sum_probs=247.0

Q ss_pred             EEECCCCEEEEEEEcCCCcEEEEEEeeCC-CccEEEEEeCCCcEEEEECCCCeeEEEec--CccceeEEEEEcC-CCCEE
Q 004214           14 VWDVDGGFCTHYFKGHKGVVSSILFHPDT-DKSLLFSGSDDATVRVWDLLAKKCVATLD--KHFSRVTSMAITS-DGSTL   89 (768)
Q Consensus        14 vwd~~~~~~~~~l~gh~~~V~~l~~spd~-~~~~l~sg~~dg~I~iWd~~~~~~~~~l~--~h~~~V~~l~fs~-d~~~L   89 (768)
                      +|+..+......+.+|.+.|++++|+|++ +.  |++|+.||.|+|||+.+++....+.  +|.+.|.+++|+| ++++|
T Consensus        57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  134 (383)
T 3ei3_B           57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTT--VAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQL  134 (383)
T ss_dssp             HHHHTTCEEEEEECCCSSCEEEEEECSSCTTE--EEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEE
T ss_pred             cccccccceEEeccCCCCCEEEEEECCCCCCE--EEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEE
Confidence            34556778888999999999999999998 65  9999999999999999888877775  6999999999999 78999


Q ss_pred             EEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCC
Q 004214           90 ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS  169 (768)
Q Consensus        90 ~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~  169 (768)
                      ++++.|+.|++||+.+.. ...+.                                                        
T Consensus       135 ~s~~~d~~i~iwd~~~~~-~~~~~--------------------------------------------------------  157 (383)
T 3ei3_B          135 FVSSIRGATTLRDFSGSV-IQVFA--------------------------------------------------------  157 (383)
T ss_dssp             EEEETTTEEEEEETTSCE-EEEEE--------------------------------------------------------
T ss_pred             EEEeCCCEEEEEECCCCc-eEEEe--------------------------------------------------------
Confidence            999999999999986421 10000                                                        


Q ss_pred             ceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec
Q 004214          170 ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG  249 (768)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  249 (768)
                                                                                                      
T Consensus       158 --------------------------------------------------------------------------------  157 (383)
T 3ei3_B          158 --------------------------------------------------------------------------------  157 (383)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCc
Q 004214          250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA  329 (768)
Q Consensus       250 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  329 (768)
                                                 ....|...|.+++  +.+++.. +++|+.||.|++||+ +++.+..+.+|...
T Consensus       158 ---------------------------~~~~~~~~v~~~~--~~~~~~~-l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~  206 (383)
T 3ei3_B          158 ---------------------------KTDSWDYWYCCVD--VSVSRQM-LATGDSTGRLLLLGL-DGHEIFKEKLHKAK  206 (383)
T ss_dssp             ---------------------------CCCCSSCCEEEEE--EETTTTE-EEEEETTSEEEEEET-TSCEEEEEECSSSC
T ss_pred             ---------------------------ccCCCCCCeEEEE--ECCCCCE-EEEECCCCCEEEEEC-CCCEEEEeccCCCc
Confidence                                       0112345566665  5566665 899999999999998 56778888899999


Q ss_pred             EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEe
Q 004214          330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWR  408 (768)
Q Consensus       330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d  408 (768)
                      |.+++|+|+++.++++++.|+.|++||+......      ...... ..|...|.+++|+| ++++|++++.|+.|++||
T Consensus       207 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------~~~~~~-~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd  279 (383)
T 3ei3_B          207 VTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK------NSYIAE-MPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYS  279 (383)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST------TCEEEE-EECSSCEEEEEECTTTSCEEEEEESSSEEEEEE
T ss_pred             EEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc------cceEEE-ecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEE
Confidence            9999999998778999999999999999853211      112222 36899999999999 999999999999999999


Q ss_pred             CCCCceEEEEeccC-----------------CCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec--CCCcEEE
Q 004214          409 LPDLVSVVTFRGHK-----------------RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG--HTSSVLR  469 (768)
Q Consensus       409 ~~~~~~~~~~~~~~-----------------~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~  469 (768)
                      +.+++....+.+|.                 ..+..++|+|++++  +++.|+.|++||+.+++++..+.+  |...+..
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~  357 (383)
T 3ei3_B          280 SYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISL  357 (383)
T ss_dssp             TTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCE
T ss_pred             CCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEE
Confidence            99988777776553                 33445667777766  778999999999999999999987  4577888


Q ss_pred             EEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214          470 ASFLTRGAQIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       470 ~~~s~~~~~l~s~~~dg~i~iwd~~~  495 (768)
                      ++|+|++++|++|+ ||.|++||+++
T Consensus       358 ~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          358 NKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             EEEecCccEEEEec-CCcEEEEecCC
Confidence            89999999999997 99999999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=8.1e-38  Score=333.33  Aligned_cols=351  Identities=19%  Similarity=0.241  Sum_probs=251.8

Q ss_pred             CCCcEEEEECCCCEEEEEEEcCCCcEEEEEEee-CCCccEEEEEeCCCcEEEEECCCCeeEEEec-------------Cc
Q 004214            8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHP-DTDKSLLFSGSDDATVRVWDLLAKKCVATLD-------------KH   73 (768)
Q Consensus         8 ~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~sp-d~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~-------------~h   73 (768)
                      .++.+++|+...+.....+.+|.+.|++++|+| ++++  |++|+.||.|++||+.+++....+.             +|
T Consensus        21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (408)
T 4a11_B           21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRY--MLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH   98 (408)
T ss_dssp             HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCE--EEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred             ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCE--EEEEcCCCeEEEEECCCCcccceEeccccccccccccccC
Confidence            355678898888888889999999999999999 8887  9999999999999999876654443             59


Q ss_pred             cceeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceE
Q 004214           74 FSRVTSMAITS-DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH  152 (768)
Q Consensus        74 ~~~V~~l~fs~-d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (768)
                      ...|.+++|+| ++.+|++++.||.|++||+.+++....+.....                                   
T Consensus        99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----------------------------------  143 (408)
T 4a11_B           99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEET-----------------------------------  143 (408)
T ss_dssp             SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSC-----------------------------------
T ss_pred             CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCc-----------------------------------
Confidence            99999999999 788999999999999999998776555433222                                   


Q ss_pred             EEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEE
Q 004214          153 FITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS  232 (768)
Q Consensus       153 ~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~  232 (768)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (408)
T 4a11_B          144 --------------------------------------------------------------------------------  143 (408)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeecccCCceeEEEEec--CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214          233 KRLVGYNEEILDLKFLG--EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR  310 (768)
Q Consensus       233 ~~~~~~~~~i~~~~~~~--~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~  310 (768)
                               +.++.+.+  +++.++++++.++.|++||+.++.....+.+|...|.++.  +.+++..++++|+.||.|+
T Consensus       144 ---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~--~~~~~~~ll~~~~~dg~i~  212 (408)
T 4a11_B          144 ---------VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS--WSPRYDYILATASADSRVK  212 (408)
T ss_dssp             ---------EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE--ECSSCTTEEEEEETTSCEE
T ss_pred             ---------eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE--ECCCCCcEEEEEcCCCcEE
Confidence                     23333332  2455889999999999999999999999999999999998  7788876799999999999


Q ss_pred             EEeCCCce-EEEee---------------ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceee
Q 004214          311 LWDSESRC-CVGVG---------------TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA  374 (768)
Q Consensus       311 iwd~~~~~-~~~~~---------------~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  374 (768)
                      +||+.++. .+..+               ..|...|.+++|+|++. ++++++.||.|++||+...........     .
T Consensus       213 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~  286 (408)
T 4a11_B          213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNGENTLVNYG-----K  286 (408)
T ss_dssp             EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCBCCCCCC-----C
T ss_pred             EEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC-EEEEecCCCeEEEEECCCCccceeccc-----c
Confidence            99998764 33333               57889999999999966 899999999999999986542211100     0


Q ss_pred             EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214          375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG  454 (768)
Q Consensus       375 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~  454 (768)
                      ........+........+..+++++.++.|++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||+.++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~  366 (408)
T 4a11_B          287 VCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY  366 (408)
T ss_dssp             CCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred             ccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence            00111122222233344566777788999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEeecCCCcEEEEEEEe-CCCEEEEEeCCCcEEEEECCC
Q 004214          455 SCLKTFEGHTSSVLRASFLT-RGAQIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       455 ~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~  495 (768)
                      +++.....+...   ..+.+ ....+.+++.++.+++|+...
T Consensus       367 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          367 EPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             ------------------------------------------
T ss_pred             CccCCCCceEec---cccccccceeecccCccCceeecCCcc
Confidence            887765533322   23333 333456677789999998654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.7e-37  Score=326.91  Aligned_cols=297  Identities=13%  Similarity=0.143  Sum_probs=250.7

Q ss_pred             EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe------eEEEecCccceeEEEEEcCC----C---CE
Q 004214           22 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK------CVATLDKHFSRVTSMAITSD----G---ST   88 (768)
Q Consensus        22 ~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~------~~~~l~~h~~~V~~l~fs~d----~---~~   88 (768)
                      ....+.+|.+.|++++|+|  +.  |++|+.||.|++||+.+++      .+..+.+|...|++++|+|+    +   ++
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SE--EEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhhcCeEEEEecC--Ce--EEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence            3567789999999999998  44  9999999999999999888      78889999999999999999    9   99


Q ss_pred             EEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcC
Q 004214           89 LISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNAD  168 (768)
Q Consensus        89 L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~  168 (768)
                      |++++.||.|++||+.+++....                                                         
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~~---------------------------------------------------------  106 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETKK---------------------------------------------------------  106 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCC---------------------------------------------------------
T ss_pred             EEEEcCCCCEEEEEccCCccccc---------------------------------------------------------
Confidence            99999999999999765321000                                                         


Q ss_pred             CceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEe
Q 004214          169 SACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFL  248 (768)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  248 (768)
                                                                                                      
T Consensus       107 --------------------------------------------------------------------------------  106 (397)
T 1sq9_A          107 --------------------------------------------------------------------------------  106 (397)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCceeeeeeeCC-----ccceEEEeeeee----cCCCEEEEEEeCCCeEEEEeCCC---
Q 004214          249 GEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH-----SEIVLCLDTCAL----SSGKILIVTGSKDNSVRLWDSES---  316 (768)
Q Consensus       249 ~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-----~~~v~~l~~~~~----~~~~~~l~~~~~dg~i~iwd~~~---  316 (768)
                                              .....+..|     ...|.++.  +.    +++..+|++++.||.|++||+.+   
T Consensus       107 ------------------------~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  160 (397)
T 1sq9_A          107 ------------------------VIFEKLDLLDSDMKKHSFWALK--WGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  160 (397)
T ss_dssp             ------------------------EEEEEECCSCTTGGGSCEEEEE--EECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             ------------------------ccceeecccccccCCCcEEEEE--EeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence                                    000122223     35666665  44    44443389999999999999988   


Q ss_pred             ---ceEEE-----ee-------ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec---
Q 004214          317 ---RCCVG-----VG-------TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA---  378 (768)
Q Consensus       317 ---~~~~~-----~~-------~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---  378 (768)
                         +..+.     .+       ..|...|.+++|+|++  ++++++.||.|++||+...          .....+..   
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~  228 (397)
T 1sq9_A          161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTL----------RPLYNFESQHS  228 (397)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTT----------EEEEEEECCC-
T ss_pred             ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCC----------ceeEEEecccc
Confidence               65554     55       4488999999999997  8999999999999999742          34555566   


Q ss_pred             c---CCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceEEEEec-------------cCCCeEEEEEccCCCEEEE
Q 004214          379 H---GKDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLVSVVTFRG-------------HKRGIWSVEFSPVDQVVIT  439 (768)
Q Consensus       379 ~---~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~-------------~~~~v~~v~~s~~~~~l~t  439 (768)
                      |   ...|.+++|+|++++|++++.|   |.|++||+.+++.+..+.+             |...|.+++|+|++++|++
T Consensus       229 h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  308 (397)
T 1sq9_A          229 MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS  308 (397)
T ss_dssp             --CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred             ccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE
Confidence            8   8999999999999999999999   9999999999999999998             9999999999999999999


Q ss_pred             eeCCCcEEEEeCCCCceeEEee------cC---------------CCcEEEEEEEeCC----------CEEEEEeCCCcE
Q 004214          440 ASGDKTIKIWSISDGSCLKTFE------GH---------------TSSVLRASFLTRG----------AQIVSCGADGLV  488 (768)
Q Consensus       440 ~~~d~~i~iwd~~~~~~~~~~~------~~---------------~~~v~~~~~s~~~----------~~l~s~~~dg~i  488 (768)
                      ++.||.|++||+.+++++..+.      +|               ...|++++|+|+|          ++|++++.||.|
T Consensus       309 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i  388 (397)
T 1sq9_A          309 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI  388 (397)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred             EeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcE
Confidence            9999999999999999999999      88               9999999999998          799999999999


Q ss_pred             EEEECCCCe
Q 004214          489 KLWTVRTGE  497 (768)
Q Consensus       489 ~iwd~~~~~  497 (768)
                      ++|++.+|+
T Consensus       389 ~iw~~~~g~  397 (397)
T 1sq9_A          389 RWFREAGGK  397 (397)
T ss_dssp             EEEEEEC--
T ss_pred             EEEEcCCCC
Confidence            999998764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.8e-36  Score=342.59  Aligned_cols=293  Identities=25%  Similarity=0.444  Sum_probs=245.0

Q ss_pred             EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCC-----CeeEEEecCccceeEEEEEcCCCCEEEEEeCC
Q 004214           21 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-----KKCVATLDKHFSRVTSMAITSDGSTLISAGRD   95 (768)
Q Consensus        21 ~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~-----~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~d   95 (768)
                      .....+++|.+.|++|+|+|++. .+|+||+.|++|++||+.+     +.....+.+|...|.+++|+|++++|+|++.|
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~-~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D  451 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNA-DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD  451 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCC-SEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             chhhhcccCCceeEEEEecCCCC-CEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence            34567899999999999999753 3599999999999999975     34567899999999999999999999999999


Q ss_pred             CeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeee
Q 004214           96 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ  175 (768)
Q Consensus        96 g~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~  175 (768)
                      +.|++||+.++++.                                                                  
T Consensus       452 g~v~vwd~~~~~~~------------------------------------------------------------------  465 (694)
T 3dm0_A          452 GELRLWDLAAGVST------------------------------------------------------------------  465 (694)
T ss_dssp             SEEEEEETTTTEEE------------------------------------------------------------------
T ss_pred             CcEEEEECCCCcce------------------------------------------------------------------
Confidence            99999998764321                                                                  


Q ss_pred             cCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEE
Q 004214          176 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL  255 (768)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  255 (768)
                                                                                                      
T Consensus       466 --------------------------------------------------------------------------------  465 (694)
T 3dm0_A          466 --------------------------------------------------------------------------------  465 (694)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee---ecccCcEEE
Q 004214          256 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG---TGHMGAVGA  332 (768)
Q Consensus       256 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~  332 (768)
                                          ..+.+|...|.+++  +.+++.. |++|+.|++|++||..........   .+|...|.+
T Consensus       466 --------------------~~~~~h~~~v~~~~--~s~~~~~-l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~  522 (694)
T 3dm0_A          466 --------------------RRFVGHTKDVLSVA--FSLDNRQ-IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC  522 (694)
T ss_dssp             --------------------EEEECCSSCEEEEE--ECTTSSC-EEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEE
T ss_pred             --------------------eEEeCCCCCEEEEE--EeCCCCE-EEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEE
Confidence                                13345667777776  6666665 999999999999998766544432   468899999


Q ss_pred             EEEecCCC-cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004214          333 VAFSKKLQ-NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD  411 (768)
Q Consensus       333 ~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~  411 (768)
                      ++|+|++. ..+++++.|++|++||+...          .....+.+|...|++++|+|++++|++|+.||.|++||+.+
T Consensus       523 ~~~~~~~~~~~l~s~s~d~~v~vwd~~~~----------~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~  592 (694)
T 3dm0_A          523 VRFSPNTLQPTIVSASWDKTVKVWNLSNC----------KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE  592 (694)
T ss_dssp             EEECSCSSSCEEEEEETTSCEEEEETTTC----------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred             EEEeCCCCcceEEEEeCCCeEEEEECCCC----------cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            99999863 48999999999999999743          35566788999999999999999999999999999999999


Q ss_pred             CceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC-------------------CcEEEEEE
Q 004214          412 LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-------------------SSVLRASF  472 (768)
Q Consensus       412 ~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-------------------~~v~~~~~  472 (768)
                      ++.+..+. +...|.+++|+|++.++++++. +.|++||+.++.++..+..+.                   ..+++++|
T Consensus       593 ~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  670 (694)
T 3dm0_A          593 GKKLYSLE-ANSVIHALCFSPNRYWLCAATE-HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW  670 (694)
T ss_dssp             TEEEECCB-CSSCEEEEEECSSSSEEEEEET-TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEE
T ss_pred             CceEEEec-CCCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEE
Confidence            99888776 4568999999999998887765 669999999999888775332                   23789999


Q ss_pred             EeCCCEEEEEeCCCcEEEEECCC
Q 004214          473 LTRGAQIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       473 s~~~~~l~s~~~dg~i~iwd~~~  495 (768)
                      +|+|++|++|+.||.|++|++..
T Consensus       671 spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          671 SADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             CTTSSEEEEEETTSEEEEEEC--
T ss_pred             cCCCCEEEEEcCCCeEEEEeccC
Confidence            99999999999999999999853

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-38  Score=339.95  Aligned_cols=313  Identities=12%  Similarity=0.154  Sum_probs=229.4

Q ss_pred             EEEeecCCCcEEEEECCCCEE----EEEEEcCCCcEEEEEEeeCC----CccEEEEEeCCCcEEEEECCCCee-------
Q 004214            2 FALLEGADRKVLVWDVDGGFC----THYFKGHKGVVSSILFHPDT----DKSLLFSGSDDATVRVWDLLAKKC-------   66 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~----~~~l~gh~~~V~~l~~spd~----~~~~l~sg~~dg~I~iWd~~~~~~-------   66 (768)
                      ++|+|+.|++|+|||+.++++    ...+.+|.+.|.+++|+|++    ...+||+|+.||+|+|||+.++..       
T Consensus       175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~  254 (524)
T 2j04_B          175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM  254 (524)
T ss_dssp             -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred             hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence            367788999999999987753    24577899999999999972    234599999999999999976642       


Q ss_pred             ----EEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhh
Q 004214           67 ----VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI  142 (768)
Q Consensus        67 ----~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  142 (768)
                          ...+.+|...|++++|+|++ .|++|+.||+|++||+.++..                                  
T Consensus       255 ~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~----------------------------------  299 (524)
T 2j04_B          255 CEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEV----------------------------------  299 (524)
T ss_dssp             CCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSS----------------------------------
T ss_pred             ecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCC----------------------------------
Confidence                34788899999999999864 899999999999999864310                                  


Q ss_pred             hcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccC
Q 004214          143 KKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV  222 (768)
Q Consensus       143 ~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~  222 (768)
                                                                                                      
T Consensus       300 --------------------------------------------------------------------------------  299 (524)
T 2j04_B          300 --------------------------------------------------------------------------------  299 (524)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEE
Q 004214          223 PEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVT  302 (768)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~  302 (768)
                                                                         ....+.+|...|.++++.+.+++..+|++
T Consensus       300 ---------------------------------------------------~~~~~~~H~~~V~sv~~~~s~~g~~~laS  328 (524)
T 2j04_B          300 ---------------------------------------------------PSFYDQVHDSYILSVSTAYSDFEDTVVST  328 (524)
T ss_dssp             ---------------------------------------------------CSEEEECSSSCEEEEEEECCTTSCCEEEE
T ss_pred             ---------------------------------------------------ceEEeecccccEEEEEEEcCCCCCeEEEE
Confidence                                                               00134457777777743244444256999


Q ss_pred             EeCCCeEEEEeCCCceEEEeeecccC--cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccC
Q 004214          303 GSKDNSVRLWDSESRCCVGVGTGHMG--AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG  380 (768)
Q Consensus       303 ~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  380 (768)
                      |+.||+|++||++++++...+.+|..  .|.+++|+|++. .+++++.|++|++||++..          .....+.+|.
T Consensus       329 ~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~----------~~~~~l~gH~  397 (524)
T 2j04_B          329 VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAA----------FAVHPLVSRE  397 (524)
T ss_dssp             EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCT----------TCCEEEEECS
T ss_pred             eccCCeEEEEECCCCCcccccccccccCcccceEeCCCcC-eEEEeCCCCcEEEEECccc----------ccceeeecCC
Confidence            99999999999998877666666653  588999999976 6899999999999999853          2334566899


Q ss_pred             CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec-----cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC-CC
Q 004214          381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-----HKRGIWSVEFSPVDQVVITASGDKTIKIWSIS-DG  454 (768)
Q Consensus       381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~-~~  454 (768)
                      ..|++++|+|+|++|++|+.||+|++||+... .+..+..     +...+++++|+|+++.+.. ..  .+.+|+.. ++
T Consensus       398 ~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g  473 (524)
T 2j04_B          398 TTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DS--SYEVYPLTVND  473 (524)
T ss_dssp             SCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE-CC--CCCCCC-----
T ss_pred             CceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc-cC--CceecccccCC
Confidence            99999999999999999999999999998654 2211111     1225789999999985532 22  34455443 57


Q ss_pred             ceeEEeecCCCcEEEEEEEeCCC---EEEEEeCCCcEEEEECCC
Q 004214          455 SCLKTFEGHTSSVLRASFLTRGA---QIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       455 ~~~~~~~~~~~~v~~~~~s~~~~---~l~s~~~dg~i~iwd~~~  495 (768)
                      .++.++.+|...|.+++|+|++.   ++++|+.||.|+||++.-
T Consensus       474 ~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          474 VSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             --------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             cceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence            78889999999999999999964   999999999999999853

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.9e-36  Score=315.84  Aligned_cols=289  Identities=15%  Similarity=0.188  Sum_probs=247.6

Q ss_pred             EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee--CCccceEEEeeeeecCCCEEEEEEeCCC
Q 004214          230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSKDN  307 (768)
Q Consensus       230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~l~~~~~dg  307 (768)
                      .....+.+|...|.+++|++.+..++++++.||.|++||+.++.....+.  +|...|.+++  +.+.+..+|++++.||
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMK--FNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEE--EETTEEEEEEEEETTT
T ss_pred             ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEE--eCCCCCCEEEEEeCCC
Confidence            34556788999999999998666999999999999999999888777665  6999999998  7775656699999999


Q ss_pred             eEEEEeCCCceEEEeeec---ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeE
Q 004214          308 SVRLWDSESRCCVGVGTG---HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN  384 (768)
Q Consensus       308 ~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~  384 (768)
                      .|++||+.+. .+..+..   |...|.+++|+|++. ++++++.||.|++||++.           .....+..|...|.
T Consensus       142 ~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~-----------~~~~~~~~h~~~v~  208 (383)
T 3ei3_B          142 ATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDG-----------HEIFKEKLHKAKVT  208 (383)
T ss_dssp             EEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETTS-----------CEEEEEECSSSCEE
T ss_pred             EEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECCC-----------CEEEEeccCCCcEE
Confidence            9999999964 4444443   448899999999966 899999999999999842           24556678999999


Q ss_pred             EEEEccCCC-EEEEEeCCCcEEEEeCCC----CceEEEEeccCCCeEEEEEcc-CCCEEEEeeCCCcEEEEeCCCCceeE
Q 004214          385 SLAVAPNDS-LVCTGSQDRTACVWRLPD----LVSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDGSCLK  458 (768)
Q Consensus       385 ~~~~s~~~~-~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~v~~s~-~~~~l~t~~~d~~i~iwd~~~~~~~~  458 (768)
                      +++|+|+++ ++++++.|+.|++||+.+    +..+..+ +|...|++++|+| ++++|++++.|+.|++||+.+++++.
T Consensus       209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~  287 (383)
T 3ei3_B          209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD  287 (383)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred             EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence            999999999 999999999999999987    5566666 6999999999999 99999999999999999999998888


Q ss_pred             EeecCC-----------------CcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc--CCCcEEEEEEcCCCC
Q 004214          459 TFEGHT-----------------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK--HEDKIWALAVGKKTE  519 (768)
Q Consensus       459 ~~~~~~-----------------~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~s~~~~  519 (768)
                      .+.+|.                 ..+..++|+|+|++  +++.||.|++||+.+++++..+.+  |...+..++|+|+++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~  365 (383)
T 3ei3_B          288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGD  365 (383)
T ss_dssp             EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSS
T ss_pred             ccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCcc
Confidence            877654                 34555777777776  778999999999999999999987  457788889999999


Q ss_pred             EEEEEeCCCcEEEEEcCC
Q 004214          520 MFATGGSDALVNLWHDST  537 (768)
Q Consensus       520 ~l~s~~~dg~v~vw~~~~  537 (768)
                      +|++|+ ||.|++|++.+
T Consensus       366 ~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          366 VLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEEEEE-TTEEEEEECC-
T ss_pred             EEEEec-CCcEEEEecCC
Confidence            999997 99999999875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.9e-36  Score=318.34  Aligned_cols=302  Identities=19%  Similarity=0.250  Sum_probs=242.7

Q ss_pred             EEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe--eEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214           25 YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD  102 (768)
Q Consensus        25 ~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~--~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd  102 (768)
                      .+..|.+.|++++|+|++++  |++|+.||.|++||+.+++  .+..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~--l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQ--IAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT   80 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSE--EEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             eecccCCCeEEEEECCCCCE--EEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence            35569999999999999887  9999999999999999988  8899999999999999999999999999999999999


Q ss_pred             CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214          103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI  182 (768)
Q Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~  182 (768)
                      +.+++.....                                                                      
T Consensus        81 ~~~~~~~~~~----------------------------------------------------------------------   90 (372)
T 1k8k_C           81 LKGRTWKPTL----------------------------------------------------------------------   90 (372)
T ss_dssp             EETTEEEEEE----------------------------------------------------------------------
T ss_pred             CCCCeeeeeE----------------------------------------------------------------------
Confidence            8654311110                                                                      


Q ss_pred             cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214          183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE  262 (768)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~  262 (768)
                                                                                                      
T Consensus        91 --------------------------------------------------------------------------------   90 (372)
T 1k8k_C           91 --------------------------------------------------------------------------------   90 (372)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce----EEEeeecccCcEEEEEEecC
Q 004214          263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC----CVGVGTGHMGAVGAVAFSKK  338 (768)
Q Consensus       263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~  338 (768)
                                    .+..|...+.++.  +.+++.. +++++.||.|++||+..+.    ......+|...|.+++|+|+
T Consensus        91 --------------~~~~~~~~v~~~~--~~~~~~~-l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  153 (372)
T 1k8k_C           91 --------------VILRINRAARCVR--WAPNEKK-FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN  153 (372)
T ss_dssp             --------------ECCCCSSCEEEEE--ECTTSSE-EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred             --------------EeecCCCceeEEE--ECCCCCE-EEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCC
Confidence                          1122444555554  4455544 7777777788888776654    23334578999999999998


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCCCcc--------ccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214          339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQ--------PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP  410 (768)
Q Consensus       339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  410 (768)
                      +. ++++++.||.|++||+.........        .........+..|...|.+++|+|++++|++++.||.|++||+.
T Consensus       154 ~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  232 (372)
T 1k8k_C          154 SV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD  232 (372)
T ss_dssp             SS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred             CC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            65 8999999999999997633211100        01233455566889999999999999999999999999999999


Q ss_pred             CCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC--Cc--e------------------------------
Q 004214          411 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD--GS--C------------------------------  456 (768)
Q Consensus       411 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~--~~--~------------------------------  456 (768)
                      +++.+..+..|..+|.+++|+|+++++++| .|+.|++|++.+  +.  +                              
T Consensus       233 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (372)
T 1k8k_C          233 KKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS  311 (372)
T ss_dssp             GTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--
T ss_pred             CCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccc
Confidence            999999999999999999999999988888 899999999987  42  1                              


Q ss_pred             e------EEe-ecCCCcEEEEEEE-eCC---CEEEEEeCCCcEEEEECCCCe
Q 004214          457 L------KTF-EGHTSSVLRASFL-TRG---AQIVSCGADGLVKLWTVRTGE  497 (768)
Q Consensus       457 ~------~~~-~~~~~~v~~~~~s-~~~---~~l~s~~~dg~i~iwd~~~~~  497 (768)
                      .      ..+ .+|...|++++|. ++|   ++|++|+.||.|++|++.+++
T Consensus       312 ~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          312 EGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             -------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             ccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence            0      223 4899999999976 566   899999999999999997754

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.3e-36  Score=316.98  Aligned_cols=290  Identities=15%  Similarity=0.241  Sum_probs=249.0

Q ss_pred             eecccCCceeEEEEecC---CCCEEEEEeCCCcEEEEECCCceeeeeeeC-----CccceEEEeeeeecCC---CEEEEE
Q 004214          234 RLVGYNEEILDLKFLGE---EEQYLAVATNIEQVQVYDLSSMSCSYVLAG-----HSEIVLCLDTCALSSG---KILIVT  302 (768)
Q Consensus       234 ~~~~~~~~i~~~~~~~~---~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~---~~~l~~  302 (768)
                      ...+|..+|.+++|+|.   ....+++++.++.|++||+.++..+..+..     |...|.+++  +.+++   +.+|++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~l~~   90 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCA--WTYDSNTSHPLLAV   90 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEE--EEECTTTCCEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEE--eccCCCCCCCEEEE
Confidence            44589999999999974   556677777778999999998887766654     557799998  55552   346999


Q ss_pred             EeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe---ecc
Q 004214          303 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV---AAH  379 (768)
Q Consensus       303 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~  379 (768)
                      |+.||.|++||+.+++.+..+.+|...|.+++|+|++..++++++.||.|++||+...          ......   ..|
T Consensus        91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~  160 (366)
T 3k26_A           91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD----------TLVAIFGGVEGH  160 (366)
T ss_dssp             EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT----------EEEEEECSTTSC
T ss_pred             ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC----------eEEEEecccccc
Confidence            9999999999999999999999999999999999944558999999999999999743          233333   578


Q ss_pred             CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe----------------------------ccCCCeEEEEEc
Q 004214          380 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR----------------------------GHKRGIWSVEFS  431 (768)
Q Consensus       380 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------------~~~~~v~~v~~s  431 (768)
                      ...|.+++|+|++++|++++.||.|++||+.+++....+.                            +|...|.+++|+
T Consensus       161 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (366)
T 3k26_A          161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL  240 (366)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE
T ss_pred             cCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc
Confidence            9999999999999999999999999999998775543333                            399999999999


Q ss_pred             cCCCEEEEeeCCCcEEEEeCCCCce--------------eEEeecCCCcEEEEEEEeC--CCEEEEEeCCCcEEEEECCC
Q 004214          432 PVDQVVITASGDKTIKIWSISDGSC--------------LKTFEGHTSSVLRASFLTR--GAQIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       432 ~~~~~l~t~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~  495 (768)
                        ++++++++.|+.|++||+.++..              +..+.+|...|++++|+|+  +++|++|+.||.|++||+.+
T Consensus       241 --~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~  318 (366)
T 3k26_A          241 --GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV  318 (366)
T ss_dssp             --TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred             --CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence              78999999999999999988754              7888899999999999999  99999999999999999998


Q ss_pred             Ce----EEEEeccC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          496 GE----CIATYDKH--EDKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       496 ~~----~~~~~~~~--~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      ++    ....+..|  ...|++++|+|++++|++++.||.|++|++.+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          319 EDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             SSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            75    44577777  79999999999999999999999999999853

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.7e-36  Score=315.25  Aligned_cols=296  Identities=18%  Similarity=0.268  Sum_probs=238.7

Q ss_pred             EEEEEcCCCcEEEEEEeeCCCccEEEEEeC---CCcEEEEECCCCeeEEEe-cCccceeEEEEEcCC---CCEEEEEeCC
Q 004214           23 THYFKGHKGVVSSILFHPDTDKSLLFSGSD---DATVRVWDLLAKKCVATL-DKHFSRVTSMAITSD---GSTLISAGRD   95 (768)
Q Consensus        23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~---dg~I~iWd~~~~~~~~~l-~~h~~~V~~l~fs~d---~~~L~s~~~d   95 (768)
                      .+.+.+|.+.|++++|+|++.. ++++|+.   ||.|+|||+.+++..... .+|...|.+++|+|+   +++|++++.|
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~-l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d   89 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAK-FVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG   89 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSE-EEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred             hhhccCCCCceEEEEEcCCCce-EEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence            4567889999999999999864 4667776   999999999998876543 369999999999998   6999999999


Q ss_pred             CeEEEEECCCCe-eeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeee
Q 004214           96 KVVNLWDLRDYS-CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE  174 (768)
Q Consensus        96 g~i~vWd~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~  174 (768)
                      |.|++||+.+++ .+                                                                 
T Consensus        90 g~i~iwd~~~~~~~~-----------------------------------------------------------------  104 (357)
T 3i2n_A           90 GNLHIWNLEAPEMPV-----------------------------------------------------------------  104 (357)
T ss_dssp             SCEEEECTTSCSSCS-----------------------------------------------------------------
T ss_pred             CeEEEEeCCCCCccE-----------------------------------------------------------------
Confidence            999999987643 11                                                                 


Q ss_pred             ecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCE
Q 004214          175 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY  254 (768)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  254 (768)
                                                                                                      
T Consensus       105 --------------------------------------------------------------------------------  104 (357)
T 3i2n_A          105 --------------------------------------------------------------------------------  104 (357)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeee----eecCCCEEEEEEeCCCeEEEEeCCCce-EEEeeecccC-
Q 004214          255 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTC----ALSSGKILIVTGSKDNSVRLWDSESRC-CVGVGTGHMG-  328 (768)
Q Consensus       255 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~----~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~-  328 (768)
                                           ..+.+|...|.++.+.    +.+++.. |++|+.||.|++||+.++. .+..+..|.+ 
T Consensus       105 ---------------------~~~~~~~~~v~~~~~~~~~~~s~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  162 (357)
T 3i2n_A          105 ---------------------YSVKGHKEIINAIDGIGGLGIGEGAPE-IVTGSRDGTVKVWDPRQKDDPVANMEPVQGE  162 (357)
T ss_dssp             ---------------------EEECCCSSCEEEEEEESGGGCC-CCCE-EEEEETTSCEEEECTTSCSSCSEEECCCTTS
T ss_pred             ---------------------EEEEecccceEEEeeccccccCCCccE-EEEEeCCCeEEEEeCCCCCCcceeccccCCC
Confidence                                 1222344444444321    3455554 9999999999999999876 6666666554 


Q ss_pred             ---cEEEEE----EecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc---CCCEEEEE
Q 004214          329 ---AVGAVA----FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP---NDSLVCTG  398 (768)
Q Consensus       329 ---~v~~~~----~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~  398 (768)
                         .+.+++    |+|++. ++++++.||.|++||+...           .......|...|.+++|+|   ++.+++++
T Consensus       163 ~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  230 (357)
T 3i2n_A          163 NKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNM-----------ALRWETNIKNGVCSLEFDRKDISMNKLVAT  230 (357)
T ss_dssp             CCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTT-----------EEEEEEECSSCEEEEEESCSSSSCCEEEEE
T ss_pred             CCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccC-----------ceeeecCCCCceEEEEcCCCCCCCCEEEEE
Confidence               899998    677755 8999999999999999753           1234467889999999999   99999999


Q ss_pred             eCCCcEEEEeCCCCceEEEEe-----ccCCCeEEEEEccCCC-EEEEeeCCCcEEEEeCCCC------------------
Q 004214          399 SQDRTACVWRLPDLVSVVTFR-----GHKRGIWSVEFSPVDQ-VVITASGDKTIKIWSISDG------------------  454 (768)
Q Consensus       399 ~~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~v~~s~~~~-~l~t~~~d~~i~iwd~~~~------------------  454 (768)
                      +.||.|++||+++++....+.     +|...|++++|+|+++ +|++++.||.|++||+..+                  
T Consensus       231 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~  310 (357)
T 3i2n_A          231 SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGS  310 (357)
T ss_dssp             ESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCE
T ss_pred             CCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccc
Confidence            999999999998776554444     8999999999999998 8999999999999999754                  


Q ss_pred             -ceeEEeecCCCcEEEEEEEeCCCEEE-EEeCCCcEEEEECCCCeE
Q 004214          455 -SCLKTFEGHTSSVLRASFLTRGAQIV-SCGADGLVKLWTVRTGEC  498 (768)
Q Consensus       455 -~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~  498 (768)
                       +++..+.+|...|++++|+|++++|+ +++.||.|++||+.+.+.
T Consensus       311 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          311 VSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             cceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence             46778889999999999999999998 899999999999987654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-35  Score=302.39  Aligned_cols=287  Identities=24%  Similarity=0.353  Sum_probs=257.3

Q ss_pred             eEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214          229 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS  308 (768)
Q Consensus       229 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~  308 (768)
                      ......+.+|.+.|.+++|  +++.++++++.+|.|++||+.++.....+..|...|.+++  +.+++.. +++|+.||.
T Consensus         8 ~~~~~~l~~h~~~v~~~~~--~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~~~~~dg~   82 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA--VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVC--YDSEKEL-LLFGGKDTM   82 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE--EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEE--EETTTTE-EEEEETTSC
T ss_pred             HHHHHHhhCCCCCcEEEEe--cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEE--ECCCCCE-EEEecCCCe
Confidence            3455678899999999999  5778899999999999999999999999999999999998  7777765 999999999


Q ss_pred             EEEEeCCCc---eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214          309 VRLWDSESR---CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS  385 (768)
Q Consensus       309 i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  385 (768)
                      |++|++...   +....+.+|...|.+++|.+   .++++++.||.|++||..            ........|...+.+
T Consensus        83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~d~~i~~~d~~------------~~~~~~~~~~~~v~~  147 (313)
T 3odt_A           83 INGVPLFATSGEDPLYTLIGHQGNVCSLSFQD---GVVISGSWDKTAKVWKEG------------SLVYNLQAHNASVWD  147 (313)
T ss_dssp             EEEEETTCCTTSCC-CEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETT------------EEEEEEECCSSCEEE
T ss_pred             EEEEEeeecCCCCcccchhhcccCEEEEEecC---CEEEEEeCCCCEEEEcCC------------cEEEecccCCCceeE
Confidence            999998653   56777889999999999943   389999999999999922            245566779999999


Q ss_pred             EEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEec-cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC
Q 004214          386 LAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH  463 (768)
Q Consensus       386 ~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~  463 (768)
                      ++++| ++.++++++.||.|++||  ..+....+.. |...+.+++|+|++. +++++.||.|++||+++++++..+.+|
T Consensus       148 ~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~  224 (313)
T 3odt_A          148 AKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH  224 (313)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC
Confidence            99999 999999999999999999  5566777777 899999999999998 999999999999999999999999999


Q ss_pred             CCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214          464 TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE  540 (768)
Q Consensus       464 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~  540 (768)
                      ...|++++|+|++ .|++++.||.|++||+.+++++..+..|...|++++|+|+++ +++++.||.|++|++.+++.
T Consensus       225 ~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          225 ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred             CceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence            9999999999999 699999999999999999999999999999999999999998 66799999999999987654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=8e-37  Score=327.69  Aligned_cols=299  Identities=15%  Similarity=0.215  Sum_probs=231.8

Q ss_pred             EEEEEcCCCcEEEEEEeeC-CCccEEEEEeCCCcEEEEECCCCee--EEEecCccceeEEEEEcC-CCCEEEEEeCCCeE
Q 004214           23 THYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWDLLAKKC--VATLDKHFSRVTSMAITS-DGSTLISAGRDKVV   98 (768)
Q Consensus        23 ~~~l~gh~~~V~~l~~spd-~~~~~l~sg~~dg~I~iWd~~~~~~--~~~l~~h~~~V~~l~fs~-d~~~L~s~~~dg~i   98 (768)
                      .....+|...|+||+|||. +..  ||+|+.||+|+|||+.+++.  +..+.+|.+.|++|+|+| ++++|+|++.||+|
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~--lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v  189 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPST--VAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT  189 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTC--EEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred             cccCCCCCCCEEEEEEeCCCCCE--EEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence            3456789999999999995 444  99999999999999987754  445678999999999998 78999999999999


Q ss_pred             EEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCC
Q 004214           99 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS  178 (768)
Q Consensus        99 ~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~  178 (768)
                      ++||++++.......                                                                 
T Consensus       190 ~iwd~~~~~~~~~~~-----------------------------------------------------------------  204 (435)
T 4e54_B          190 RLQDFKGNILRVFAS-----------------------------------------------------------------  204 (435)
T ss_dssp             EEEETTSCEEEEEEC-----------------------------------------------------------------
T ss_pred             EEeeccCCceeEEec-----------------------------------------------------------------
Confidence            999987542110000                                                                 


Q ss_pred             ceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEE
Q 004214          179 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA  258 (768)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  258 (768)
                                                                                                      
T Consensus       205 --------------------------------------------------------------------------------  204 (435)
T 4e54_B          205 --------------------------------------------------------------------------------  204 (435)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecC
Q 004214          259 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK  338 (768)
Q Consensus       259 ~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  338 (768)
                                         ...+...+.+++  +.+++.. |++|+.||.|++||+.. +.+..+.+|...|.+++|+|+
T Consensus       205 -------------------~~~~~~~~~~~~--~~~~~~~-l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~  261 (435)
T 4e54_B          205 -------------------SDTINIWFCSLD--VSASSRM-VVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPC  261 (435)
T ss_dssp             -------------------CSSCSCCCCCEE--EETTTTE-EEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTT
T ss_pred             -------------------cCCCCccEEEEE--ECCCCCE-EEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCC
Confidence                               000111222333  4455554 88899999999999864 456677899999999999999


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 004214          339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF  418 (768)
Q Consensus       339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  418 (768)
                      +..++++++.|++|++||++......       .......|...|++++|+|+|++|++++.||.|++||+.++.....+
T Consensus       262 ~~~~~~s~s~d~~v~iwd~~~~~~~~-------~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~  334 (435)
T 4e54_B          262 CDWFLATASVDQTVKIWDLRQVRGKA-------SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL  334 (435)
T ss_dssp             CSSEEEEEETTSBCCEEETTTCCSSS-------CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred             CceEEEEecCcceeeEEecccccccc-------eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE
Confidence            88899999999999999998653211       22233568999999999999999999999999999999999888877


Q ss_pred             eccCC------CeEEEEEccCCCEEEEee------------CCCcEEEEeCCCCceeEEee-cCCCcEEEE-EEEeCCCE
Q 004214          419 RGHKR------GIWSVEFSPVDQVVITAS------------GDKTIKIWSISDGSCLKTFE-GHTSSVLRA-SFLTRGAQ  478 (768)
Q Consensus       419 ~~~~~------~v~~v~~s~~~~~l~t~~------------~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~-~~s~~~~~  478 (768)
                      ..|..      .+....|+|++.++++++            .++.|++||..+++++..+. +|...|.++ +|+|+|++
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~  414 (435)
T 4e54_B          335 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDT  414 (435)
T ss_dssp             CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSC
T ss_pred             ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCE
Confidence            76643      234556777777776654            34679999999999988865 688888887 69999999


Q ss_pred             EEEEeCCCcEEEEECCCCeEE
Q 004214          479 IVSCGADGLVKLWTVRTGECI  499 (768)
Q Consensus       479 l~s~~~dg~i~iwd~~~~~~~  499 (768)
                      |++|+ |+.|+||+++++++.
T Consensus       415 lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          415 LASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             EEEEC-SSEEEECCCC-----
T ss_pred             EEEEc-CCcEEEEECCcCeee
Confidence            99876 789999999988753

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=8.6e-36  Score=313.37  Aligned_cols=292  Identities=20%  Similarity=0.210  Sum_probs=253.0

Q ss_pred             ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce--eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC
Q 004214          237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS  314 (768)
Q Consensus       237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~  314 (768)
                      .|..+|.+++|++ +++++++++.++.|++||+.+++  ....+.+|...|.+++  +.+++.. +++++.||.|++||+
T Consensus         6 ~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~-l~~~~~dg~i~vwd~   81 (372)
T 1k8k_C            6 FLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVD--WAPDSNR-IVTCGTDRNAYVWTL   81 (372)
T ss_dssp             SCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEE--EETTTTE-EEEEETTSCEEEEEE
T ss_pred             ccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEE--EeCCCCE-EEEEcCCCeEEEEEC
Confidence            4778999999985 78899999999999999999987  8888999999999998  7777765 999999999999999


Q ss_pred             CCceEEEe--eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214          315 ESRCCVGV--GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND  392 (768)
Q Consensus       315 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  392 (768)
                      .+++....  +..|...|.+++|+|++. ++++++.||.|++||+.....      ..........|...|.+++|+|++
T Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~  154 (372)
T 1k8k_C           82 KGRTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQEND------WWVCKHIKKPIRSTVLSLDWHPNS  154 (372)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTT------EEEEEEECTTCCSCEEEEEECTTS
T ss_pred             CCCeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCc------ceeeeeeecccCCCeeEEEEcCCC
Confidence            88875444  367899999999999965 899999999999999975421      011223335688999999999999


Q ss_pred             CEEEEEeCCCcEEEEeC------------------CCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214          393 SLVCTGSQDRTACVWRL------------------PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG  454 (768)
Q Consensus       393 ~~l~~~~~dg~i~i~d~------------------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~  454 (768)
                      ++|++++.||.|++||+                  ..++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus       155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  234 (372)
T 1k8k_C          155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK  234 (372)
T ss_dssp             SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            99999999999999995                  467888889899999999999999999999999999999999999


Q ss_pred             ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC--CeE--------------------------------E-
Q 004214          455 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT--GEC--------------------------------I-  499 (768)
Q Consensus       455 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~--~~~--------------------------------~-  499 (768)
                      +++..+.+|..+|.+++|+|++.+|++| .||.|++|++.+  ++.                                . 
T Consensus       235 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (372)
T 1k8k_C          235 MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG  313 (372)
T ss_dssp             TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC----
T ss_pred             ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccccc
Confidence            9999999999999999999999988887 899999999988  431                                0 


Q ss_pred             -----EEe-ccCCCcEEEEEEc-CCC---CEEEEEeCCCcEEEEEcCCHHH
Q 004214          500 -----ATY-DKHEDKIWALAVG-KKT---EMFATGGSDALVNLWHDSTAAE  540 (768)
Q Consensus       500 -----~~~-~~~~~~v~~l~~s-~~~---~~l~s~~~dg~v~vw~~~~~~~  540 (768)
                           ..+ .+|..+|++++|+ ++|   .+|++|+.||.|++|++.+.+.
T Consensus       314 ~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          314 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             -----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred             CccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence                 223 3899999999966 676   9999999999999999876543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.7e-36  Score=313.40  Aligned_cols=294  Identities=17%  Similarity=0.279  Sum_probs=247.9

Q ss_pred             eeecccCCceeEEEEecCCCCEEEEEeC---CCcEEEEECCCceeeeee-eCCccceEEEeeeeecCC--CEEEEEEeCC
Q 004214          233 KRLVGYNEEILDLKFLGEEEQYLAVATN---IEQVQVYDLSSMSCSYVL-AGHSEIVLCLDTCALSSG--KILIVTGSKD  306 (768)
Q Consensus       233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~---~~~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~~~~~~--~~~l~~~~~d  306 (768)
                      ....+|...|.+++|++.+..++++++.   ++.|++||+.+++..... .+|...|.++.  +.+++  +.++++|+.|
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~l~~~~~d   89 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGT--FGATSLQQRYLATGDFG   89 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEE--CTTCCTTTCCEEEEETT
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEE--EcCCCCCCceEEEecCC
Confidence            4456799999999999877677778876   899999999988766443 47899999997  66663  3459999999


Q ss_pred             CeEEEEeCCCce-EEEeeecccCcEEEEEE------ecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeecc
Q 004214          307 NSVRLWDSESRC-CVGVGTGHMGAVGAVAF------SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH  379 (768)
Q Consensus       307 g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  379 (768)
                      |.|++||+.++. .+..+.+|...|.++.|      +|++. ++++++.||.|++||+.....         .......|
T Consensus        90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~---------~~~~~~~~  159 (357)
T 3i2n_A           90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDD---------PVANMEPV  159 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSS---------CSEEECCC
T ss_pred             CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCC---------cceecccc
Confidence            999999999887 88888999999999965      56755 899999999999999985421         22223333


Q ss_pred             ----CCCeEEEE----EccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEcc---CCCEEEEeeCCCcEEE
Q 004214          380 ----GKDINSLA----VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP---VDQVVITASGDKTIKI  448 (768)
Q Consensus       380 ----~~~i~~~~----~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~t~~~d~~i~i  448 (768)
                          ...+.+++    |+|+++++++++.||.|++||+++++.... ..|...|.+++|+|   ++.+|++++.||.|++
T Consensus       160 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  238 (357)
T 3i2n_A          160 QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV  238 (357)
T ss_dssp             TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred             CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence                33788888    788999999999999999999999887544 56899999999999   9999999999999999


Q ss_pred             EeCCCCceeEEee-----cCCCcEEEEEEEeCCC-EEEEEeCCCcEEEEECCCC-------------------eEEEEec
Q 004214          449 WSISDGSCLKTFE-----GHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTG-------------------ECIATYD  503 (768)
Q Consensus       449 wd~~~~~~~~~~~-----~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~-------------------~~~~~~~  503 (768)
                      ||+++++++..+.     +|...|++++|+|+++ +|++++.||.|++||+.++                   +++..+.
T Consensus       239 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  318 (357)
T 3i2n_A          239 FDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT  318 (357)
T ss_dssp             EEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE
T ss_pred             EeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccc
Confidence            9999887766665     8999999999999998 8999999999999999754                   5678888


Q ss_pred             cCCCcEEEEEEcCCCCEEE-EEeCCCcEEEEEcCCHH
Q 004214          504 KHEDKIWALAVGKKTEMFA-TGGSDALVNLWHDSTAA  539 (768)
Q Consensus       504 ~~~~~v~~l~~s~~~~~l~-s~~~dg~v~vw~~~~~~  539 (768)
                      +|..+|++++|+|++++|+ +++.||.|++|++.+.+
T Consensus       319 ~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          319 LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            9999999999999999998 89999999999998754

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7.5e-36  Score=312.97  Aligned_cols=299  Identities=16%  Similarity=0.271  Sum_probs=239.9

Q ss_pred             EEEcCCCcEEEEEEeeC---CCccEEEEEeCCCcEEEEECCCCeeEEEecC-----ccceeEEEEEcCC----CCEEEEE
Q 004214           25 YFKGHKGVVSSILFHPD---TDKSLLFSGSDDATVRVWDLLAKKCVATLDK-----HFSRVTSMAITSD----GSTLISA   92 (768)
Q Consensus        25 ~l~gh~~~V~~l~~spd---~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~-----h~~~V~~l~fs~d----~~~L~s~   92 (768)
                      ...+|.+.|++++|+|+   +... +++++.++.|++||+.+++.+..+..     |...|++++|+|+    +++|+++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~-~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPL-VFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCE-EEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCce-EEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            34489999999999985   4433 55555566999999998888777664     5577999999998    6688899


Q ss_pred             eCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCcee
Q 004214           93 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL  172 (768)
Q Consensus        93 ~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~  172 (768)
                      +.||.|++||+.+++.                                                                
T Consensus        92 ~~dg~i~v~d~~~~~~----------------------------------------------------------------  107 (366)
T 3k26_A           92 GSRGIIRIINPITMQC----------------------------------------------------------------  107 (366)
T ss_dssp             ETTCEEEEECTTTCCE----------------------------------------------------------------
T ss_pred             cCCCEEEEEEchhceE----------------------------------------------------------------
Confidence            9888888888765432                                                                


Q ss_pred             eeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCC
Q 004214          173 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE  252 (768)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  252 (768)
                                                                                                      
T Consensus       108 --------------------------------------------------------------------------------  107 (366)
T 3k26_A          108 --------------------------------------------------------------------------------  107 (366)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee---ecccCc
Q 004214          253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG---TGHMGA  329 (768)
Q Consensus       253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~  329 (768)
                                            ...+.+|...|.++.  +.+.++.+|++|+.||.|++||+.+++.+..+   .+|...
T Consensus       108 ----------------------~~~~~~~~~~i~~~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  163 (366)
T 3k26_A          108 ----------------------IKHYVGHGNAINELK--FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE  163 (366)
T ss_dssp             ----------------------EEEEESCCSCEEEEE--ECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred             ----------------------eeeecCCCCcEEEEE--ECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence                                  113345666777776  66634445999999999999999999998888   689999


Q ss_pred             EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCc------------------cccccceeeEeeccCCCeEEEEEccC
Q 004214          330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE------------------QPMNLKAKAVVAAHGKDINSLAVAPN  391 (768)
Q Consensus       330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------------------~~~~~~~~~~~~~~~~~i~~~~~s~~  391 (768)
                      |.+++|+|++. ++++++.||.|++||+........                  .............|...|.+++|+  
T Consensus       164 v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--  240 (366)
T 3k26_A          164 VLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--  240 (366)
T ss_dssp             EEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--
T ss_pred             eeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--
Confidence            99999999866 899999999999999985321000                  000011122334489999999999  


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCce--------------EEEEeccCCCeEEEEEccC--CCEEEEeeCCCcEEEEeCCCCc
Q 004214          392 DSLVCTGSQDRTACVWRLPDLVS--------------VVTFRGHKRGIWSVEFSPV--DQVVITASGDKTIKIWSISDGS  455 (768)
Q Consensus       392 ~~~l~~~~~dg~i~i~d~~~~~~--------------~~~~~~~~~~v~~v~~s~~--~~~l~t~~~d~~i~iwd~~~~~  455 (768)
                      ++++++++.||.|++||+.++..              +..+.+|...|++++|+|+  +++|++|+.||.|++||+.+++
T Consensus       241 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~  320 (366)
T 3k26_A          241 GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED  320 (366)
T ss_dssp             TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred             CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence            77999999999999999987644              7788899999999999999  9999999999999999999886


Q ss_pred             ee----EEeecC--CCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214          456 CL----KTFEGH--TSSVLRASFLTRGAQIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       456 ~~----~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  495 (768)
                      +.    ..+.+|  ...|++++|+|++++|++++.||.|++||+.+
T Consensus       321 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          321 PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             GGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            44    477777  79999999999999999999999999999853

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.1e-34  Score=309.57  Aligned_cols=278  Identities=22%  Similarity=0.376  Sum_probs=244.5

Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee--CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE
Q 004214          242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC  319 (768)
Q Consensus       242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  319 (768)
                      ...+.|++  .+.||+|. |+.|++||..++++...+.  +|...|++++  +.+++.. |++|+.||.|++||+.+++.
T Consensus       108 ~~~l~wS~--~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~--fspdg~~-lasgs~Dg~v~iWd~~~~~~  181 (420)
T 4gga_A          108 LNLVDWSS--GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVA--WIKEGNY-LAVGTSSAEVQLWDVQQQKR  181 (420)
T ss_dssp             CBCEEECT--TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEE--ECTTSSE-EEEEETTSCEEEEETTTTEE
T ss_pred             ceeEEECC--CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEE--ECCCCCE-EEEEECCCeEEEEEcCCCcE
Confidence            45688874  35888876 7999999999999877664  6778899998  7777775 99999999999999999999


Q ss_pred             EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe
Q 004214          320 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS  399 (768)
Q Consensus       320 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  399 (768)
                      +..+.+|...+.++++++.   ++++|+.|+.+++||....         ......+..|...+..+.++|+++++++++
T Consensus       182 ~~~~~~h~~~v~~~s~~~~---~l~sgs~d~~i~~~d~~~~---------~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~  249 (420)
T 4gga_A          182 LRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVA---------EHHVATLSGHSQEVCGLRWAPDGRHLASGG  249 (420)
T ss_dssp             EEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTSS---------SCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEeCCCCceEEEeeCCC---EEEEEeCCCceeEeeeccc---------ceeeEEecccccceeeeeecCCCCeeeeee
Confidence            9999999999999988754   8999999999999998743         235566788999999999999999999999


Q ss_pred             CCCcEEEEeCCCCc----eEEEEeccCCCeEEEEEccCC-CEEEE--eeCCCcEEEEeCCCCceeEEeecCCCcEEEEEE
Q 004214          400 QDRTACVWRLPDLV----SVVTFRGHKRGIWSVEFSPVD-QVVIT--ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF  472 (768)
Q Consensus       400 ~dg~i~i~d~~~~~----~~~~~~~~~~~v~~v~~s~~~-~~l~t--~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  472 (768)
                      .|+.+++|+..+++    .+.....|...|.+++|+|++ .++++  |+.|++|++||+.++.++..+..| ..+.++.|
T Consensus       250 ~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~  328 (420)
T 4gga_A          250 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILW  328 (420)
T ss_dssp             TTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEE
T ss_pred             ccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeee
Confidence            99999999998764    456777899999999999975 45554  457999999999999999998854 67889999


Q ss_pred             EeCCCEEEEEe--CCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          473 LTRGAQIVSCG--ADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       473 s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      +++++.+++++  .||.|+|||+.+++++.++.+|.+.|++++|+|+|++|+||+.||+|+||++.+.
T Consensus       329 ~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          329 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred             cCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            99999998765  6899999999999999999999999999999999999999999999999998754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.9e-34  Score=307.79  Aligned_cols=289  Identities=24%  Similarity=0.402  Sum_probs=226.5

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEE--cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFK--GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTS   79 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~--gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~   79 (768)
                      +||+| .|++|+|||+.+|++++.+.  +|...|++|+|+|+|++  ||+|+.||+|+|||+.+++++..+.+|...|.+
T Consensus       118 ~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~--lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~  194 (420)
T 4gga_A          118 VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNY--LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS  194 (420)
T ss_dssp             EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCE--EEEEECCCeEEEEEcCCCcEEEEEeCCCCceEE
Confidence            46665 49999999999999888765  67889999999999987  999999999999999999999999999999998


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCC
Q 004214           80 MAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER  159 (768)
Q Consensus        80 l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (768)
                      ++++  +..|++++.|+.+++||......                                                   
T Consensus       195 ~s~~--~~~l~sgs~d~~i~~~d~~~~~~---------------------------------------------------  221 (420)
T 4gga_A          195 LSWN--SYILSSGSRSGHIHHHDVRVAEH---------------------------------------------------  221 (420)
T ss_dssp             EEEE--TTEEEEEETTSEEEEEETTSSSC---------------------------------------------------
T ss_pred             EeeC--CCEEEEEeCCCceeEeeecccce---------------------------------------------------
Confidence            8775  67999999999999998754210                                                   


Q ss_pred             cEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccC
Q 004214          160 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYN  239 (768)
Q Consensus       160 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~  239 (768)
                                                                                                      
T Consensus       222 --------------------------------------------------------------------------------  221 (420)
T 4gga_A          222 --------------------------------------------------------------------------------  221 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce-
Q 004214          240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-  318 (768)
Q Consensus       240 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-  318 (768)
                                                        .+..+.+|...+.++.  +.+.+.. +++++.||.+++|+..+++ 
T Consensus       222 ----------------------------------~~~~~~~h~~~~~~~~--~~~~g~~-l~s~~~D~~v~i~~~~~~~~  264 (420)
T 4gga_A          222 ----------------------------------HVATLSGHSQEVCGLR--WAPDGRH-LASGGNDNLVNVWPSAPGEG  264 (420)
T ss_dssp             ----------------------------------EEEEEECCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEESSCCSS
T ss_pred             ----------------------------------eeEEecccccceeeee--ecCCCCe-eeeeeccccceEEeeccccc
Confidence                                              0113344555666654  5555554 8888888888888887654 


Q ss_pred             ---EEEeeecccCcEEEEEEecCCCcEEEEE--eCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC
Q 004214          319 ---CVGVGTGHMGAVGAVAFSKKLQNFLVSG--SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS  393 (768)
Q Consensus       319 ---~~~~~~~~~~~v~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  393 (768)
                         .+.....|...|.+++|+|.+..+++++  +.|++|++||+..+          ..... ..+...+.++.|+|+++
T Consensus       265 ~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~----------~~~~~-~~~~~~v~~~~~~~~~~  333 (420)
T 4gga_A          265 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG----------ACLSA-VDAHSQVCSILWSPHYK  333 (420)
T ss_dssp             CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT----------EEEEE-EECSSCEEEEEEETTTT
T ss_pred             cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc----------cccee-eccccceeeeeecCCCC
Confidence               3455678999999999999988888765  47999999999854          22333 33456799999999999


Q ss_pred             EEEEEe--CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEE
Q 004214          394 LVCTGS--QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRAS  471 (768)
Q Consensus       394 ~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~  471 (768)
                      .+++++  .|+.|++||+.+++++..+.+|...|++++|+|+|++|++|+.|++|+|||+.+..+.+..+.+...+....
T Consensus       334 ~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s  413 (420)
T 4gga_A          334 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSS  413 (420)
T ss_dssp             EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--------------
T ss_pred             eEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccc
Confidence            988875  789999999999999999999999999999999999999999999999999988888777776666555444


Q ss_pred             EEe
Q 004214          472 FLT  474 (768)
Q Consensus       472 ~s~  474 (768)
                      |..
T Consensus       414 ~~~  416 (420)
T 4gga_A          414 LIH  416 (420)
T ss_dssp             ---
T ss_pred             cCC
Confidence            443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=4.1e-36  Score=322.14  Aligned_cols=292  Identities=15%  Similarity=0.196  Sum_probs=238.1

Q ss_pred             eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceee--eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEE
Q 004214          234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS--YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL  311 (768)
Q Consensus       234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~i  311 (768)
                      ...+|...|++++|+|.++.+||+|+.||.|+|||+.++...  ..+.+|...|.+++  |.|.+..+|++|+.||+|++
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~--f~p~~~~~l~s~s~D~~v~i  191 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLK--FNPLNTNQFYASSMEGTTRL  191 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEE--ECSSCTTEEEEECSSSCEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEE--EeCCCCCEEEEEeCCCEEEE
Confidence            445678899999999988999999999999999999877644  34568999999998  77655556999999999999


Q ss_pred             EeCCCceEEEeeec--ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214          312 WDSESRCCVGVGTG--HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA  389 (768)
Q Consensus       312 wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  389 (768)
                      ||+.++........  +...+.+++|+|++. +|++|+.||.|++||++..           ....+..|...|++++|+
T Consensus       192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~-----------~~~~~~~h~~~v~~v~~~  259 (435)
T 4e54_B          192 QDFKGNILRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGK-----------ELWNLRMHKKKVTHVALN  259 (435)
T ss_dssp             EETTSCEEEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSC-----------BCCCSBCCSSCEEEEEEC
T ss_pred             eeccCCceeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcc-----------eeEEEecccceEEeeeec
Confidence            99988765544443  344678999999966 8999999999999998632           233456799999999999


Q ss_pred             cCCC-EEEEEeCCCcEEEEeCCCCceEE---EEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC
Q 004214          390 PNDS-LVCTGSQDRTACVWRLPDLVSVV---TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS  465 (768)
Q Consensus       390 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~  465 (768)
                      |++. ++++|+.|+.|++||+++.+...   ...+|..+|++++|+|+|++|++++.||.|+|||+.++.+...+..|..
T Consensus       260 p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~  339 (435)
T 4e54_B          260 PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH  339 (435)
T ss_dssp             TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC
T ss_pred             CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc
Confidence            9876 78899999999999998765433   3357999999999999999999999999999999999998888876653


Q ss_pred             ------cEEEEEEEeCCCEEEEEe------------CCCcEEEEECCCCeEEEEec-cCCCcEEEE-EEcCCCCEEEEEe
Q 004214          466 ------SVLRASFLTRGAQIVSCG------------ADGLVKLWTVRTGECIATYD-KHEDKIWAL-AVGKKTEMFATGG  525 (768)
Q Consensus       466 ------~v~~~~~s~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l-~~s~~~~~l~s~~  525 (768)
                            .+....|+|++.++++++            .++.|++||..+++++..+. +|...|.++ +|+|+|++|++|+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~  419 (435)
T 4e54_B          340 RHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM  419 (435)
T ss_dssp             CCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred             cccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence                  234566777777776654            23579999999999998874 677888887 6999999999876


Q ss_pred             CCCcEEEEEcCCHHH
Q 004214          526 SDALVNLWHDSTAAE  540 (768)
Q Consensus       526 ~dg~v~vw~~~~~~~  540 (768)
                       |+.|+||++.+++.
T Consensus       420 -d~~i~iW~~~~gk~  433 (435)
T 4e54_B          420 -GYHILIWSQQEART  433 (435)
T ss_dssp             -SSEEEECCCC----
T ss_pred             -CCcEEEEECCcCee
Confidence             88999999988754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=6.6e-35  Score=295.36  Aligned_cols=251  Identities=23%  Similarity=0.375  Sum_probs=215.2

Q ss_pred             eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC--ceEEEeeecccCcEEEEEEecC-CCcEEEEEeCCCeE
Q 004214          276 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES--RCCVGVGTGHMGAVGAVAFSKK-LQNFLVSGSSDHTI  352 (768)
Q Consensus       276 ~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i  352 (768)
                      ..+.+|...|.+++  +.+++.. |++|+.|++|++||+..  .+++..+.+|.++|.+++|+|+ ...+|++|+.|++|
T Consensus         3 ~~~~~h~~~V~~~~--~s~~g~~-las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v   79 (297)
T 2pm7_B            3 VIANAHNEMIHDAV--MDYYGKR-MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (297)
T ss_dssp             EECCSCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred             eeccCCcCceEEEE--ECCCCCE-EEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence            35678999999998  7777776 99999999999999974  4677888999999999999864 24589999999999


Q ss_pred             EEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCc--eEEEEeccCCCeEEE
Q 004214          353 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDLV--SVVTFRGHKRGIWSV  428 (768)
Q Consensus       353 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~v  428 (768)
                      ++||+..+.        .........|...|.+++|+|+  +.+|++++.||.|++||++++.  ....+.+|...|.++
T Consensus        80 ~iWd~~~~~--------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~  151 (297)
T 2pm7_B           80 MIWKEENGR--------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA  151 (297)
T ss_dssp             EEEEBSSSC--------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEE
T ss_pred             EEEEcCCCc--------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceE
Confidence            999997531        1233455678999999999997  8999999999999999998763  246678999999999


Q ss_pred             EEccC-------------CCEEEEeeCCCcEEEEeCCCCc----eeEEeecCCCcEEEEEEEeCC---CEEEEEeCCCcE
Q 004214          429 EFSPV-------------DQVVITASGDKTIKIWSISDGS----CLKTFEGHTSSVLRASFLTRG---AQIVSCGADGLV  488 (768)
Q Consensus       429 ~~s~~-------------~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~dg~i  488 (768)
                      +|+|+             +++|++|+.|++|++||++++.    +...+.+|...|.+++|+|++   .+|++++.||+|
T Consensus       152 ~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v  231 (297)
T 2pm7_B          152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC  231 (297)
T ss_dssp             EECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred             eecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcE
Confidence            99997             5799999999999999998776    667889999999999999985   899999999999


Q ss_pred             EEEECCCCe---EEEEe--ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          489 KLWTVRTGE---CIATY--DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       489 ~iwd~~~~~---~~~~~--~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      ++||+.++.   ....+  ..|...|++++|+|++++|++++.||.|++|+...
T Consensus       232 ~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             EEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            999998743   22233  46889999999999999999999999999999763

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-34  Score=305.32  Aligned_cols=283  Identities=18%  Similarity=0.298  Sum_probs=244.8

Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeC-CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214          242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG-HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV  320 (768)
Q Consensus       242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  320 (768)
                      +..+.|++   ..+++++.++.|++||+.++.....+.. |...|.+++  +.+++.. |++|+.||.|++||+.+++.+
T Consensus        96 ~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~--~s~~~~~-l~~~~~dg~i~iwd~~~~~~~  169 (401)
T 4aez_A           96 LNLLDWSN---LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVK--WSHDGSF-LSVGLGNGLVDIYDVESQTKL  169 (401)
T ss_dssp             CBCEEECT---TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEE--ECTTSSE-EEEEETTSCEEEEETTTCCEE
T ss_pred             EEEEeecC---CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEE--ECCCCCE-EEEECCCCeEEEEECcCCeEE
Confidence            44455543   4577788899999999999998877766 889999998  7676665 999999999999999999999


Q ss_pred             EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC
Q 004214          321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ  400 (768)
Q Consensus       321 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  400 (768)
                      ..+.+|...|.+++|++.   ++++++.||.|++||++..         .........|...|.+++|+|++++|++|+.
T Consensus       170 ~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  237 (401)
T 4aez_A          170 RTMAGHQARVGCLSWNRH---VLSSGSRSGAIHHHDVRIA---------NHQIGTLQGHSSEVCGLAWRSDGLQLASGGN  237 (401)
T ss_dssp             EEECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTSS---------SCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEecCCCCceEEEEECCC---EEEEEcCCCCEEEEecccC---------cceeeEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence            999999999999999653   8999999999999999742         2345667789999999999999999999999


Q ss_pred             CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCC-CEEEEee--CCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCC
Q 004214          401 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD-QVVITAS--GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA  477 (768)
Q Consensus       401 dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  477 (768)
                      ||.|++||+.+++....+.+|...|.+++|+|++ .++++++  .|+.|++||+.+++++..+. +...|.+++|+|+++
T Consensus       238 d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~  316 (401)
T 4aez_A          238 DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSK  316 (401)
T ss_dssp             TSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSS
T ss_pred             CCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCC
Confidence            9999999999999999999999999999999976 5666655  69999999999999999987 678899999999999


Q ss_pred             EEEEE--eCCCcEEEEECCCCeEEE--EeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHHHH
Q 004214          478 QIVSC--GADGLVKLWTVRTGECIA--TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREE  543 (768)
Q Consensus       478 ~l~s~--~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~  543 (768)
                      +++++  +.||.|++||+.+++...  .+.+|...|.+++|+|++++|++++.||.|++|++.+++....
T Consensus       317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred             eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence            99994  489999999999976554  4678999999999999999999999999999999998765543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.5e-35  Score=307.20  Aligned_cols=201  Identities=13%  Similarity=0.096  Sum_probs=169.2

Q ss_pred             ccCcEEEEEEecCCCcEE-EEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcE
Q 004214          326 HMGAVGAVAFSKKLQNFL-VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTA  404 (768)
Q Consensus       326 ~~~~v~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  404 (768)
                      +...+.+++|+|+|+.++ ++++.|++|++||+...          ..... ..|...|.+++|+|+|+++++++.+ .+
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~----------~~~~~-~~~~~~V~~v~fspdg~~l~s~s~~-~~  199 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL----------TEKFE-IETRGEVKDLHFSTDGKVVAYITGS-SL  199 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT----------EEEEE-EECSSCCCEEEECTTSSEEEEECSS-CE
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC----------cEEEE-eCCCCceEEEEEccCCceEEeccce-eE
Confidence            445688999999988532 34457999999999743          23333 3477889999999999999998854 56


Q ss_pred             EEEeCCCCceEEE--EeccCCCeEEEEEccCCCEEEEeeCCC----cEEEEeCCCCce----eEEeecCCCcEEEEEEEe
Q 004214          405 CVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGDK----TIKIWSISDGSC----LKTFEGHTSSVLRASFLT  474 (768)
Q Consensus       405 ~i~d~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~t~~~d~----~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~  474 (768)
                      .+|+..++..+..  ..+|...|.+++|+|+++++++++.|+    .+++|++..+..    ...+.+|...|++++|+|
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp  279 (365)
T 4h5i_A          200 EVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM  279 (365)
T ss_dssp             EEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT
T ss_pred             EEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC
Confidence            7777777765543  456888999999999999999999887    688999877653    456778999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          475 RGAQIVSCGADGLVKLWTVRTGECIATY-DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       475 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      +|++|++|+.||+|+|||+.+++++.++ .+|..+|++++|+|||++||+|+.|++|+||++.+.
T Consensus       280 dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          280 KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999999999999999999999986 789999999999999999999999999999998653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.5e-34  Score=310.19  Aligned_cols=279  Identities=28%  Similarity=0.559  Sum_probs=248.0

Q ss_pred             cccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214          236 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE  315 (768)
Q Consensus       236 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~  315 (768)
                      .++...|.++.+   +++++++|+.+|.|++||+.+++....+.+|...|.++.  +  ++. ++++|+.||.|++||+.
T Consensus       130 ~~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~--~--~~~-~l~sg~~dg~i~vwd~~  201 (435)
T 1p22_A          130 SETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ--Y--DER-VIITGSSDSTVRVWDVN  201 (435)
T ss_dssp             CSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEE--C--CSS-EEEEEETTSCEEEEESS
T ss_pred             cCCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEE--E--CCC-EEEEEcCCCeEEEEECC
Confidence            345567888876   678999999999999999999999999999999999997  3  444 59999999999999999


Q ss_pred             CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE
Q 004214          316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV  395 (768)
Q Consensus       316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  395 (768)
                      +++.+..+.+|...|.+++|+++   ++++|+.||.|++||+....       .........+|...|.++++  +++++
T Consensus       202 ~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~v~~~~~--~~~~l  269 (435)
T 1p22_A          202 TGEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPT-------DITLRRVLVGHRAAVNVVDF--DDKYI  269 (435)
T ss_dssp             SCCEEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSS-------CCEEEEEECCCSSCEEEEEE--ETTEE
T ss_pred             CCcEEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCC-------CceeeeEecCCCCcEEEEEe--CCCEE
Confidence            99999999999999999999754   89999999999999998543       12233566789999999999  78899


Q ss_pred             EEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeC
Q 004214          396 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR  475 (768)
Q Consensus       396 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  475 (768)
                      ++|+.||.|++||+.+++.+..+.+|...|.++.|+  ++++++|+.||.|++||+.+++++..+.+|...|.+++|  +
T Consensus       270 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~  345 (435)
T 1p22_A          270 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--D  345 (435)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--C
T ss_pred             EEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--c
Confidence            999999999999999999999999999999999995  789999999999999999999999999999999999998  7


Q ss_pred             CCEEEEEeCCCcEEEEECCCCe---------EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214          476 GAQIVSCGADGLVKLWTVRTGE---------CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE  540 (768)
Q Consensus       476 ~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~  540 (768)
                      +.+|++|+.||.|++||+.+++         ++..+.+|.+.|++++|  ++.+|++|+.||.|++|++.+...
T Consensus       346 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          346 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPA  417 (435)
T ss_dssp             SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred             CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence            8899999999999999998776         89999999999999999  788999999999999999987654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.6e-36  Score=315.38  Aligned_cols=298  Identities=13%  Similarity=0.136  Sum_probs=228.6

Q ss_pred             EEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC--eeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214           25 YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK--KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD  102 (768)
Q Consensus        25 ~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~--~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd  102 (768)
                      .+..|.+.|++++|+|++++  |++|+.||.|+|||+.++  +++..+.+|...|++++|+|++++|++++.|+.|++||
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~--l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd   83 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTE--FVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE   83 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSE--EECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred             eEecCCCcEEEEEECCCCCE--EEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            34557889999999999987  999999999999999988  78889999999999999999999999999999999999


Q ss_pred             CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214          103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI  182 (768)
Q Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~  182 (768)
                      +.+++..                                                                         
T Consensus        84 ~~~~~~~-------------------------------------------------------------------------   90 (377)
T 3dwl_C           84 KRPDGTW-------------------------------------------------------------------------   90 (377)
T ss_dssp             -----CC-------------------------------------------------------------------------
T ss_pred             cCCCCce-------------------------------------------------------------------------
Confidence            8654200                                                                         


Q ss_pred             cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214          183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE  262 (768)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~  262 (768)
                                                                                                      
T Consensus        91 --------------------------------------------------------------------------------   90 (377)
T 3dwl_C           91 --------------------------------------------------------------------------------   90 (377)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce---EEEeeec-ccCcEEEEEEecC
Q 004214          263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC---CVGVGTG-HMGAVGAVAFSKK  338 (768)
Q Consensus       263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~-~~~~v~~~~~~~~  338 (768)
                                .....+.+|...|.++.  +.+++.. |++|+.||.|++||+.++.   ....+.. |...|.+++|+|+
T Consensus        91 ----------~~~~~~~~~~~~v~~~~--~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  157 (377)
T 3dwl_C           91 ----------KQTLVLLRLNRAATFVR--WSPNEDK-FAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN  157 (377)
T ss_dssp             ----------CCEEECCCCSSCEEEEE--CCTTSSC-CEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT
T ss_pred             ----------eeeeEecccCCceEEEE--ECCCCCE-EEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC
Confidence                      00113344666777776  5566655 8889999999999998876   3566666 9999999999999


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCCCccc--------cccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214          339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQP--------MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP  410 (768)
Q Consensus       339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  410 (768)
                      +. ++++++.|+.|++||+..........        ........+ .|...|.+++|+|++++|++++.||.|++||+.
T Consensus       158 ~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~  235 (377)
T 3dwl_C          158 NV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS  235 (377)
T ss_dssp             SS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred             CC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            65 89999999999999986432111100        012233333 899999999999999999999999999999999


Q ss_pred             CCce----EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc--ee---------------------------
Q 004214          411 DLVS----VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS--CL---------------------------  457 (768)
Q Consensus       411 ~~~~----~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~--~~---------------------------  457 (768)
                      +++.    +..+.+|..+|.+++|+|++++|++++.++.+ +|+.....  ..                           
T Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (377)
T 3dwl_C          236 APEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGP  314 (377)
T ss_dssp             STTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---
T ss_pred             CCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccc
Confidence            9887    78889999999999999999999999876655 77654211  00                           


Q ss_pred             -------EEe----------------ecCCCcEEEEEEEeCC-C---EEEEEeCCCcEEEEEC
Q 004214          458 -------KTF----------------EGHTSSVLRASFLTRG-A---QIVSCGADGLVKLWTV  493 (768)
Q Consensus       458 -------~~~----------------~~~~~~v~~~~~s~~~-~---~l~s~~~dg~i~iwd~  493 (768)
                             ..+                ..|...|+++.+.+.. .   .|+||+.||.|++||+
T Consensus       315 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          315 VSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ----------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                   111                1399999999976643 3   6999999999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.7e-34  Score=304.67  Aligned_cols=294  Identities=22%  Similarity=0.299  Sum_probs=240.6

Q ss_pred             EEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecC-ccceeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004214           26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK-HFSRVTSMAITSDGSTLISAGRDKVVNLWDLR  104 (768)
Q Consensus        26 l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~-h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~  104 (768)
                      ..+|...+.+.++++++..  +++++.||.|++||+.+++....+.. |...|++++|+|++++|++++.||.|++||+.
T Consensus        87 ~~~~~~~~~~~~~~~s~~~--l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  164 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSNLN--VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE  164 (401)
T ss_dssp             CTTCCCCTTCBCEEECTTS--EEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCCcCCceEEEEeecCCC--EEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence            3366665444444444455  88899999999999999999888776 88999999999999999999999999999998


Q ss_pred             CCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecc
Q 004214          105 DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF  184 (768)
Q Consensus       105 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~  184 (768)
                      +++.+..+                                                                        
T Consensus       165 ~~~~~~~~------------------------------------------------------------------------  172 (401)
T 4aez_A          165 SQTKLRTM------------------------------------------------------------------------  172 (401)
T ss_dssp             TCCEEEEE------------------------------------------------------------------------
T ss_pred             CCeEEEEe------------------------------------------------------------------------
Confidence            76533222                                                                        


Q ss_pred             cccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcE
Q 004214          185 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV  264 (768)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i  264 (768)
                                                                         .+|...|.+++|   ++..+++++.+|.|
T Consensus       173 ---------------------------------------------------~~~~~~v~~~~~---~~~~l~~~~~dg~i  198 (401)
T 4aez_A          173 ---------------------------------------------------AGHQARVGCLSW---NRHVLSSGSRSGAI  198 (401)
T ss_dssp             ---------------------------------------------------CCCSSCEEEEEE---ETTEEEEEETTSEE
T ss_pred             ---------------------------------------------------cCCCCceEEEEE---CCCEEEEEcCCCCE
Confidence                                                               245556777777   34699999999999


Q ss_pred             EEEECC-CceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEE
Q 004214          265 QVYDLS-SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL  343 (768)
Q Consensus       265 ~i~d~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  343 (768)
                      ++||+. .......+.+|...|.++.  +.+++.. |++|+.||.|++||+.++..+..+..|...|.+++|+|++..++
T Consensus       199 ~i~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll  275 (401)
T 4aez_A          199 HHHDVRIANHQIGTLQGHSSEVCGLA--WRSDGLQ-LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLL  275 (401)
T ss_dssp             EEEETTSSSCEEEEEECCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEE
T ss_pred             EEEecccCcceeeEEcCCCCCeeEEE--EcCCCCE-EEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEE
Confidence            999998 5667778899999999998  6676665 99999999999999999999999999999999999999988888


Q ss_pred             EEEe--CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceE--EE
Q 004214          344 VSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS--QDRTACVWRLPDLVSV--VT  417 (768)
Q Consensus       344 ~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~--~~  417 (768)
                      ++++  .|+.|++||+..+.          ..... .+...|.+++|+|+++++++++  .||.|++||+.++...  ..
T Consensus       276 ~~~~gs~d~~i~i~d~~~~~----------~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~  344 (401)
T 4aez_A          276 ATGGGTMDKQIHFWNAATGA----------RVNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD  344 (401)
T ss_dssp             EEECCTTTCEEEEEETTTCC----------EEEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE
T ss_pred             EEecCCCCCEEEEEECCCCC----------EEEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE
Confidence            8876  79999999998542          22222 4677899999999999999954  8999999999986544  44


Q ss_pred             EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee
Q 004214          418 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE  461 (768)
Q Consensus       418 ~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~  461 (768)
                      +.+|...|.+++|+|++++|++++.||.|++|++.+++.+....
T Consensus       345 ~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          345 IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             EECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred             ecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence            77899999999999999999999999999999999988776554

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.4e-36  Score=314.44  Aligned_cols=285  Identities=21%  Similarity=0.208  Sum_probs=231.3

Q ss_pred             ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc--eeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC
Q 004214          237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM--SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS  314 (768)
Q Consensus       237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~  314 (768)
                      .+.++|.+++|++ +++++++++.++.|++||+.++  .....+.+|...|.+++  +.+++.. |++|+.||.|++||+
T Consensus         9 ~~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~--~s~~~~~-l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C            9 ILPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVD--WAPKSNR-IVTCSQDRNAYVYEK   84 (377)
T ss_dssp             ECSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEE--ECTTTCC-EEEEETTSSEEEC--
T ss_pred             cCCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEE--EeCCCCE-EEEEeCCCeEEEEEc
Confidence            3567899999996 7789999999999999999988  78888999999999998  7777665 999999999999999


Q ss_pred             CCce---EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec-cCCCeEEEEEcc
Q 004214          315 ESRC---CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKDINSLAVAP  390 (768)
Q Consensus       315 ~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~  390 (768)
                      .++.   ....+.+|...|.+++|+|++. +|++++.|+.|++||+.....       ......+.. |...|.+++|+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~h~~~v~~~~~~~  156 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQEND-------WWVSKHLKRPLRSTILSLDWHP  156 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC------------CCCCEEECSSCCSCEEEEEECT
T ss_pred             CCCCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCccc-------ceeeeEeecccCCCeEEEEEcC
Confidence            9877   6777788999999999999866 799999999999999985421       112334445 899999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCC------------------CCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 004214          391 NDSLVCTGSQDRTACVWRLP------------------DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS  452 (768)
Q Consensus       391 ~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~  452 (768)
                      ++++|++++.||.|++||+.                  .++.+..+ +|...|++++|+|++++|++++.||.|++||+.
T Consensus       157 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~  235 (377)
T 3dwl_C          157 NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS  235 (377)
T ss_dssp             TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred             CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            99999999999999999985                  34455666 899999999999999999999999999999999


Q ss_pred             CCce----eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe------------------------------E
Q 004214          453 DGSC----LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE------------------------------C  498 (768)
Q Consensus       453 ~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~------------------------------~  498 (768)
                      ++++    +..+.+|...|.+++|+|++++|++++.++.+ +|+...+.                              .
T Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (377)
T 3dwl_C          236 APEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGP  314 (377)
T ss_dssp             STTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---
T ss_pred             CCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccc
Confidence            9988    88899999999999999999999998877665 66654111                              0


Q ss_pred             E------EEe----------------ccCCCcEEEEEEcCCC-C---EEEEEeCCCcEEEEEc
Q 004214          499 I------ATY----------------DKHEDKIWALAVGKKT-E---MFATGGSDALVNLWHD  535 (768)
Q Consensus       499 ~------~~~----------------~~~~~~v~~l~~s~~~-~---~l~s~~~dg~v~vw~~  535 (768)
                      +      ..+                ..|...|+++++.+.. .   .|+|||.||.|++|++
T Consensus       315 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          315 VSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ----------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            0      011                1299999999976543 3   6999999999999985

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.1e-34  Score=302.52  Aligned_cols=202  Identities=13%  Similarity=0.126  Sum_probs=166.3

Q ss_pred             ccceEEEeeeeecCCCEEE-EEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCC
Q 004214          282 SEIVLCLDTCALSSGKILI-VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL  360 (768)
Q Consensus       282 ~~~v~~l~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  360 (768)
                      ...+.+++  ++|++..++ ++++.|++|++||+.+++++..+. |.+.|.+++|+|+++ ++++++.++ +.+|+...+
T Consensus       133 ~~~~~~v~--fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~-~l~s~s~~~-~~~~~~~~~  207 (365)
T 4h5i_A          133 DDYTKLVY--ISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGK-VVAYITGSS-LEVISTVTG  207 (365)
T ss_dssp             TCCEEEEE--ECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSS-EEEEECSSC-EEEEETTTC
T ss_pred             ccCEEEEE--EcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCc-eEEecccee-EEEEEeccC
Confidence            34456665  778887632 344578999999999999988876 778899999999977 788887655 555555432


Q ss_pred             CCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC----cEEEEeCCCCce----EEEEeccCCCeEEEEEcc
Q 004214          361 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR----TACVWRLPDLVS----VVTFRGHKRGIWSVEFSP  432 (768)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~----~~~~~~~~~~v~~v~~s~  432 (768)
                              ..........|...|.+++|+|+++++++++.|+    .+++|++.....    ...+.+|..+|++++|+|
T Consensus       208 --------~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp  279 (365)
T 4h5i_A          208 --------SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM  279 (365)
T ss_dssp             --------CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT
T ss_pred             --------cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC
Confidence                    1122334456888899999999999999999887    688899876643    456778999999999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCceeEEe-ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC
Q 004214          433 VDQVVITASGDKTIKIWSISDGSCLKTF-EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG  496 (768)
Q Consensus       433 ~~~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  496 (768)
                      +|++||+|+.|++|+|||+.+++++.++ .+|..+|++++|+|||++|++|+.|++|+||++..+
T Consensus       280 dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          280 KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999999999999999999999885 789999999999999999999999999999999643

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=5.3e-33  Score=285.12  Aligned_cols=277  Identities=21%  Similarity=0.351  Sum_probs=240.1

Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee--CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE
Q 004214          242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC  319 (768)
Q Consensus       242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  319 (768)
                      ...++|++.  ++||+|. |+.|++||+.++++...+.  +|...|.+++  +.++++. +++|+.||.|++||+.++++
T Consensus        28 ~~~l~WS~~--~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~--~~~~~~~-l~sgs~Dg~v~iw~~~~~~~  101 (318)
T 4ggc_A           28 LNLVDWSSG--NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVA--WIKEGNY-LAVGTSSAEVQLWDVQQQKR  101 (318)
T ss_dssp             CBCEEECTT--SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEE--ECTTSSE-EEEEETTSEEEEEETTTTEE
T ss_pred             ceEEEECCC--CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEE--ECCCCCE-EEEEECCCcEEEeecCCcee
Confidence            356888754  3777765 7999999999999887664  6778899997  7777775 99999999999999999999


Q ss_pred             EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe
Q 004214          320 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS  399 (768)
Q Consensus       320 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  399 (768)
                      +..+.+|...+.++.+.+.   ++++++.++.+++|+....         .........|...+..+.++++++++++++
T Consensus       102 ~~~~~~h~~~~~~~~~~~~---~l~s~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  169 (318)
T 4ggc_A          102 LRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVA---------EHHVATLSGHSQEVCGLRWAPDGRHLASGG  169 (318)
T ss_dssp             EEEEECCSSCEEEEEEETT---EEEEEETTSEEEEEETTSS---------SCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEecCccceEEEeecCCC---EEEEEecCCceEeeecCCC---------ceeEEEEcCccCceEEEEEcCCCCEEEEEe
Confidence            9999999999988777654   8999999999999998743         235566788999999999999999999999


Q ss_pred             CCCcEEEEeCCCCc----eEEEEeccCCCeEEEEEccCCCE---EEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEE
Q 004214          400 QDRTACVWRLPDLV----SVVTFRGHKRGIWSVEFSPVDQV---VITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF  472 (768)
Q Consensus       400 ~dg~i~i~d~~~~~----~~~~~~~~~~~v~~v~~s~~~~~---l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  472 (768)
                      .||.|++||+.+++    .......+...|.+++++|++..   +++++.+++|++||........... +...+..+.|
T Consensus       170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~  248 (318)
T 4ggc_A          170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILW  248 (318)
T ss_dssp             TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEE
T ss_pred             cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeee
Confidence            99999999998765    34556678889999999997653   3467788999999998888776665 7788999999


Q ss_pred             EeCCCEEEEEe--CCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          473 LTRGAQIVSCG--ADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       473 s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      +|++..+++++  .||.|++||+.+++++.++.+|.+.|++++|+|++++|+|||.||.|+||++.+
T Consensus       249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            99999887765  799999999999999999999999999999999999999999999999999864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=2.1e-32  Score=325.43  Aligned_cols=489  Identities=10%  Similarity=0.066  Sum_probs=345.8

Q ss_pred             EEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCC------CcEEEEECCCCeeEEEecCccce
Q 004214            3 ALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD------ATVRVWDLLAKKCVATLDKHFSR   76 (768)
Q Consensus         3 latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~d------g~I~iWd~~~~~~~~~l~~h~~~   76 (768)
                      ||.++. +.|.+|++.++. ...+.+|.+.|.+++|||||++  ||+++.+      ..|++||+.+++ ...+..|...
T Consensus        27 iaf~~~-~~l~~~~~~gg~-~~~lt~~~~~v~~~~~SPDG~~--la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~  101 (1045)
T 1k32_A           27 IIFVCC-DDLWEHDLKSGS-TRKIVSNLGVINNARFFPDGRK--IAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGK  101 (1045)
T ss_dssp             EEEEET-TEEEEEETTTCC-EEEEECSSSEEEEEEECTTSSE--EEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEE
T ss_pred             EEEEEC-CcEEEEECCCCc-EEEeeeCCCcccCeEECCCCCE--EEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCc
Confidence            444443 799999999887 5678899999999999999998  6666433      479999998887 5778889988


Q ss_pred             e-------EEEEEcCCCCEEEEEeCC------CeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccch----
Q 004214           77 V-------TSMAITSDGSTLISAGRD------KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQ----  139 (768)
Q Consensus        77 V-------~~l~fs~d~~~L~s~~~d------g~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----  139 (768)
                      +       .+++|||||+.+++++.+      ..|.+|++.+++........  ...+.|+| | .+.........    
T Consensus       102 ~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~--~~~~~~sp-G-~l~~~~~~~~~~~~~  177 (1045)
T 1k32_A          102 STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGP--ATHILFAD-G-RRVIGRNTFELPHWK  177 (1045)
T ss_dssp             EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCS--CSEEEEET-T-EEEEEESCSCCTTST
T ss_pred             ccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCC--cceeeeCC-C-EEEEeccCCCccccc
Confidence            8       999999999977777754      46888888887654332221  23444665 4 11110000000    


Q ss_pred             --------------h--h----------hhcccCCcceEEEEeeCCcEEEEEEcCC--ceeeeecCCceeecccccCccc
Q 004214          140 --------------Q--T----------IKKKRRSLEIHFITVGERGIVRMWNADS--ACLYEQKSSDVTISFEMDDSKR  191 (768)
Q Consensus       140 --------------~--~----------~~~~~~~~~~~~~~~~~~g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~  191 (768)
                                    .  .          .....-.....+++++.+|.+.+|.+..  +......            ...
T Consensus       178 ~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~------------~~~  245 (1045)
T 1k32_A          178 GYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHT------------SFT  245 (1045)
T ss_dssp             TCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECC------------CCC
T ss_pred             cccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEec------------CCC
Confidence                          0  0          0000000123556667778888887643  2111110            011


Q ss_pred             ceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEE-----EeeecccCCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004214          192 GFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELIL-----SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQV  266 (768)
Q Consensus       192 ~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i  266 (768)
                      .+....++|++..++.+ .++.+++|+......  ..+..     ......+...+..++|++++++.+++++ ++.+.+
T Consensus       246 ~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l--~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~  321 (1045)
T 1k32_A          246 DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKI--EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFI  321 (1045)
T ss_dssp             SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCE--EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEE
T ss_pred             CcceeeEcCCCCEEEEE-eCCEEEEecCCceEe--eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEE
Confidence            34456888999888776 689999998732110  00000     0001123457889999834677777776 689999


Q ss_pred             EECCCceeeeeeeCCcc-ceEEEeeeeecCCCEEEEEEeCCCeEE-EEeCCCceEEEeeecccCcEEEEEEecCCCcEEE
Q 004214          267 YDLSSMSCSYVLAGHSE-IVLCLDTCALSSGKILIVTGSKDNSVR-LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV  344 (768)
Q Consensus       267 ~d~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  344 (768)
                      |+..++... .+..|.. .+.++.  ++ ++.. ++.++.++.+. +|+..++...... +|...+..++|+|+|+ +|+
T Consensus       322 ~~~~~~~~~-~~~~~~~~~~~~~~--~s-dg~~-l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~-~la  394 (1045)
T 1k32_A          322 QDVSGTYVL-KVPEPLRIRYVRRG--GD-TKVA-FIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGK-FAV  394 (1045)
T ss_dssp             ECTTSSBEE-ECSCCSCEEEEEEC--SS-SEEE-EEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSS-EEE
T ss_pred             EcCCCCceE-EccCCCcceEEeee--Ec-CCCe-EEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCCCC-EEE
Confidence            999887655 3556666 778876  55 5554 77777788898 9999887765544 7888999999999977 788


Q ss_pred             EEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC----------cEEEEeCCCCce
Q 004214          345 SGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR----------TACVWRLPDLVS  414 (768)
Q Consensus       345 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----------~i~i~d~~~~~~  414 (768)
                      +++.++.|++||+..+          ........|...+.+++|+|||++|++++.++          .|++||+.+++ 
T Consensus       395 ~~~~~~~v~~~d~~tg----------~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-  463 (1045)
T 1k32_A          395 VANDRFEIMTVDLETG----------KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-  463 (1045)
T ss_dssp             EEETTSEEEEEETTTC----------CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-
T ss_pred             EECCCCeEEEEECCCC----------ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-
Confidence            9999999999999754          23344457888899999999999999887654          89999999887 


Q ss_pred             EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc---------------------------------------
Q 004214          415 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS---------------------------------------  455 (768)
Q Consensus       415 ~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~---------------------------------------  455 (768)
                      ...+..|...+.+++|+|+|+.|++++.++...+|+.....                                       
T Consensus       464 ~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  543 (1045)
T 1k32_A          464 IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN  543 (1045)
T ss_dssp             EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCT
T ss_pred             EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCcccccccccccc
Confidence            66777888889999999999999999987777776643221                                       


Q ss_pred             ----eeEEeecCCCcEEEEEEEeCCCEEEE-------------EeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCC
Q 004214          456 ----CLKTFEGHTSSVLRASFLTRGAQIVS-------------CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT  518 (768)
Q Consensus       456 ----~~~~~~~~~~~v~~~~~s~~~~~l~s-------------~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~  518 (768)
                          .+..+..|...+..+.++|+|.++++             .+..+.|.+||+.+++.....    ..+.+++|||||
T Consensus       544 g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----~~v~~~~~S~DG  619 (1045)
T 1k32_A          544 DMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK----NNLTDLRLSADR  619 (1045)
T ss_dssp             TGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE----EEEEEEEECTTS
T ss_pred             CHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee----cCcceEEECCCC
Confidence                12344456778899999999987875             122457889999888754332    668899999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCHH
Q 004214          519 EMFATGGSDALVNLWHDSTAA  539 (768)
Q Consensus       519 ~~l~s~~~dg~v~vw~~~~~~  539 (768)
                      ++|++++.+ .+++|+..+++
T Consensus       620 ~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          620 KTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             CEEEEEETT-SCEEEEESSCT
T ss_pred             CEEEEEcCC-cEEEEeCccCc
Confidence            999999877 79999998764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.7e-34  Score=296.28  Aligned_cols=282  Identities=15%  Similarity=0.143  Sum_probs=235.8

Q ss_pred             EEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe---eEEEecCccceeEEEEEcCCCC-EEEEEeCCCeEE
Q 004214           24 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK---CVATLDKHFSRVTSMAITSDGS-TLISAGRDKVVN   99 (768)
Q Consensus        24 ~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~---~~~~l~~h~~~V~~l~fs~d~~-~L~s~~~dg~i~   99 (768)
                      ....+|.+.|++++|+|+++.  |++|+.||.|+|||+.+++   ....+.+|...|++++|+|+++ +|++++.||.|+
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~--l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   82 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSL--LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTE--EEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             ecccCCCCcEEEEEEcCCCCE--EEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence            344689999999999999887  9999999999999998876   3455668999999999999999 999999999999


Q ss_pred             EEEC-CCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCC
Q 004214          100 LWDL-RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS  178 (768)
Q Consensus       100 vWd~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~  178 (768)
                      +||+ .+++.                                                                      
T Consensus        83 ~wd~~~~~~~----------------------------------------------------------------------   92 (342)
T 1yfq_A           83 KVDLIGSPSF----------------------------------------------------------------------   92 (342)
T ss_dssp             EECSSSSSSE----------------------------------------------------------------------
T ss_pred             EEEeccCCce----------------------------------------------------------------------
Confidence            9998 65421                                                                      


Q ss_pred             ceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEE
Q 004214          179 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA  258 (768)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  258 (768)
                                                                                                      
T Consensus        93 --------------------------------------------------------------------------------   92 (342)
T 1yfq_A           93 --------------------------------------------------------------------------------   92 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eCCCcEEEEECCCceeeeeeeC--CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC---------ceEEEeeeccc
Q 004214          259 TNIEQVQVYDLSSMSCSYVLAG--HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES---------RCCVGVGTGHM  327 (768)
Q Consensus       259 ~~~~~i~i~d~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~  327 (768)
                                       ..+.+  |...|.++.  +.+ +.. +++++.||.|++||+.+         ++++..+. |.
T Consensus        93 -----------------~~~~~~~~~~~v~~l~--~~~-~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~  150 (342)
T 1yfq_A           93 -----------------QALTNNEANLGICRIC--KYG-DDK-LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VK  150 (342)
T ss_dssp             -----------------EECBSCCCCSCEEEEE--EET-TTE-EEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SC
T ss_pred             -----------------EeccccCCCCceEEEE--eCC-CCE-EEEEcCCCeEEEEcccccccccccccCCeeeEEe-eC
Confidence                             01223  555666665  445 443 77788888888888776         55555555 88


Q ss_pred             CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCC-CCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEE
Q 004214          328 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG-LSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTAC  405 (768)
Q Consensus       328 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~  405 (768)
                      ..|.+++|+|++   +++++.|+.|++||+.. ..        .........|...+.+++|+| +++++++++.||.|+
T Consensus       151 ~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~--------~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~  219 (342)
T 1yfq_A          151 NKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCED--------DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVA  219 (342)
T ss_dssp             CCEEEEEECSSE---EEEEESTTEEEEEESSCCTT--------CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEE
T ss_pred             CceEEEEecCCc---EEEEeCCCeEEEEECCcccc--------ccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEE
Confidence            999999999874   89999999999999985 32        112334456788999999999 999999999999999


Q ss_pred             EEeCCCC------ceEEEEeccCC---------CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC-CCcEEE
Q 004214          406 VWRLPDL------VSVVTFRGHKR---------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH-TSSVLR  469 (768)
Q Consensus       406 i~d~~~~------~~~~~~~~~~~---------~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~  469 (768)
                      +|+++..      +....+.+|..         +|++++|+|++++|++++.||.|++||+.+++++..+.+| ..+|++
T Consensus       220 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~  299 (342)
T 1yfq_A          220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVK  299 (342)
T ss_dssp             EEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEE
T ss_pred             EEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceE
Confidence            9999887      78888888865         9999999999999999999999999999999999999998 999999


Q ss_pred             EEEEeCCCEEEEEeCCCc-EEEEE
Q 004214          470 ASFLTRGAQIVSCGADGL-VKLWT  492 (768)
Q Consensus       470 ~~~s~~~~~l~s~~~dg~-i~iwd  492 (768)
                      ++  |++++|++++.||. .+.|.
T Consensus       300 ~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          300 IA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EE--ECSSEEEEEEECTHHHHCSS
T ss_pred             ec--CCCCeEEEEecCCccccccc
Confidence            99  99999999999998 55554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.8e-36  Score=312.38  Aligned_cols=319  Identities=11%  Similarity=0.071  Sum_probs=250.9

Q ss_pred             cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 004214           28 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS  107 (768)
Q Consensus        28 gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~  107 (768)
                      .-...|.+++|+|||+.  +||++.|++|+  |...++.   +++|...|.+++|+|+|       .++.+.+|+.+...
T Consensus        13 ~~~~~v~sv~~SpDG~~--iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~   78 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTL--YLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLE-------FENKLDFELAQQNG   78 (588)
T ss_dssp             CCSSSSCCEEECTTSCE--EEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC
T ss_pred             HhhccEEEEEECCCCCE--EEEEcCCceee--cccccce---ecCCCccEEEEEECCCC-------CcceEEEEeCCCce
Confidence            35678999999999998  99999999999  7655554   47999999999999999       34444444332111


Q ss_pred             eeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeeccccc
Q 004214          108 CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMD  187 (768)
Q Consensus       108 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~  187 (768)
                         .+                                                                           
T Consensus        79 ---~~---------------------------------------------------------------------------   80 (588)
T 2j04_A           79 ---LL---------------------------------------------------------------------------   80 (588)
T ss_dssp             ---SS---------------------------------------------------------------------------
T ss_pred             ---Ee---------------------------------------------------------------------------
Confidence               00                                                                           


Q ss_pred             CcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004214          188 DSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY  267 (768)
Q Consensus       188 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~  267 (768)
                                                                     ..++.+.|.+++|+| ++..+|+++.+|.|++|
T Consensus        81 -----------------------------------------------~~~~~~~V~~vawSP-dG~~LAs~s~dg~V~iw  112 (588)
T 2j04_A           81 -----------------------------------------------NSQPVCYPRVCKPSP-IDDWMAVLSNNGNVSVF  112 (588)
T ss_dssp             -----------------------------------------------TTSCSCCEEEEEECS-SSSCEEEEETTSCEEEE
T ss_pred             -----------------------------------------------ecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEE
Confidence                                                           001234677888875 77888899999999999


Q ss_pred             ECCCceeeeeeeCCcc-----ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce-------EEEee----ecccCcEE
Q 004214          268 DLSSMSCSYVLAGHSE-----IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-------CVGVG----TGHMGAVG  331 (768)
Q Consensus       268 d~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~----~~~~~~v~  331 (768)
                      |..+  +...+. |..     .+.+++  ++|+++. |++|+.||+|++||+.++.       .+..+    .+|...|.
T Consensus       113 d~~~--~l~~l~-~~~~~~~~sv~sva--fSPDG~~-LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~  186 (588)
T 2j04_A          113 KDNK--MLTNLD-SKGNLSSRTYHCFE--WNPIESS-IVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVT  186 (588)
T ss_dssp             ETTE--EEEECC-CSSCSTTTCEEEEE--ECSSSSC-EEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEE
T ss_pred             eCCc--eeeecc-CCCccccccEEEEE--EcCCCCE-EEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEE
Confidence            8544  555556 665     488887  7787776 9999999999999999875       35565    67888999


Q ss_pred             EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe-eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214          332 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP  410 (768)
Q Consensus       332 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  410 (768)
                      +++|+|+|   +++++.|++|++|++.....       ......+ .+|...|.+++|+  |..+|+++ +++|++||+.
T Consensus       187 sVawSPdg---Laass~D~tVrlWd~~~~~~-------~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~  253 (588)
T 2j04_A          187 HIVWYEDV---LVAALSNNSVFSMTVSASSH-------QPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLK  253 (588)
T ss_dssp             EEEEETTE---EEEEETTCCEEEECCCSSSS-------CCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETT
T ss_pred             EEEEcCCc---EEEEeCCCeEEEEECCCCcc-------ccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECC
Confidence            99999996   78899999999999875421       0012233 3688899999999  68899887 6999999999


Q ss_pred             CCceEEEEeccCCCeEEEEE--ccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcE
Q 004214          411 DLVSVVTFRGHKRGIWSVEF--SPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV  488 (768)
Q Consensus       411 ~~~~~~~~~~~~~~v~~v~~--s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  488 (768)
                      +++......+|...|..++|  +|++..+++++.||+ ++|...                .++|+|++..+++.  |+++
T Consensus       254 ~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d----------------~~~~spd~~l~a~~--d~~v  314 (588)
T 2j04_A          254 NYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED----------------ELHVTADNIIAPYL--EKKF  314 (588)
T ss_dssp             TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------SEEEECCCSSHHHH--HHHH
T ss_pred             CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------cEEECCCceEEEEc--CCEE
Confidence            88775545489999999999  999999999999999 999986                16699999888775  8999


Q ss_pred             EEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC
Q 004214          489 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS  526 (768)
Q Consensus       489 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~  526 (768)
                      ++|+...+. +..+.+ ...|.+++|||||+.+|+++.
T Consensus       315 ~lW~~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          315 KKWSTIWNE-FNNYET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             HHTTTTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             EEEECCCCc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence            999975544 445553 677999999999999998873

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.9e-34  Score=301.03  Aligned_cols=300  Identities=17%  Similarity=0.240  Sum_probs=242.0

Q ss_pred             EEEEECCCCEEEEEEEcCCCcEEEEEEeeC---CCccEEEEEeCCCcEEEEECCC-CeeE-EEecCccceeEEEEEcCCC
Q 004214           12 VLVWDVDGGFCTHYFKGHKGVVSSILFHPD---TDKSLLFSGSDDATVRVWDLLA-KKCV-ATLDKHFSRVTSMAITSDG   86 (768)
Q Consensus        12 i~vwd~~~~~~~~~l~gh~~~V~~l~~spd---~~~~~l~sg~~dg~I~iWd~~~-~~~~-~~l~~h~~~V~~l~fs~d~   86 (768)
                      +..|+......+..+.+|.+.|++++|+|+   |++  |++|+.||.|+|||+.+ +..+ ..+.+|.+.|++++|+|++
T Consensus        21 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~   98 (368)
T 3mmy_A           21 ATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNF--LIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG   98 (368)
T ss_dssp             --CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEE--EEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS
T ss_pred             eccCCCCCcceeEeccCCCCceEEEEEcCCCCCceE--EEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC
Confidence            344566677778889999999999999998   465  99999999999999987 5555 7888999999999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEE
Q 004214           87 STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN  166 (768)
Q Consensus        87 ~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd  166 (768)
                      ++|++++.||.|++||+.+++...                                                        
T Consensus        99 ~~l~s~~~dg~v~iwd~~~~~~~~--------------------------------------------------------  122 (368)
T 3mmy_A           99 SKVFTASCDKTAKMWDLSSNQAIQ--------------------------------------------------------  122 (368)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEE--------------------------------------------------------
T ss_pred             CEEEEEcCCCcEEEEEcCCCCcee--------------------------------------------------------
Confidence            999999999999999987653211                                                        


Q ss_pred             cCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEE
Q 004214          167 ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLK  246 (768)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  246 (768)
                                                                                                      
T Consensus       123 --------------------------------------------------------------------------------  122 (368)
T 3mmy_A          123 --------------------------------------------------------------------------------  122 (368)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecc
Q 004214          247 FLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH  326 (768)
Q Consensus       247 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  326 (768)
                                                     +..|...|.++.++..+++. ++++++.||.|++||+.+++.+..+..+
T Consensus       123 -------------------------------~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~  170 (368)
T 3mmy_A          123 -------------------------------IAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLP  170 (368)
T ss_dssp             -------------------------------EEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECS
T ss_pred             -------------------------------eccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecC
Confidence                                           11244556666522244444 4899999999999999998888887766


Q ss_pred             cCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE----EEEEeCCC
Q 004214          327 MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL----VCTGSQDR  402 (768)
Q Consensus       327 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~----l~~~~~dg  402 (768)
                      . .+.++.+.++   .+++++.++.+.+|++....        .........+...+.++++.++...    +++++.||
T Consensus       171 ~-~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg  238 (368)
T 3mmy_A          171 E-RCYCADVIYP---MAVVATAERGLIVYQLENQP--------SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEG  238 (368)
T ss_dssp             S-CEEEEEEETT---EEEEEEGGGCEEEEECSSSC--------EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTS
T ss_pred             C-CceEEEecCC---eeEEEeCCCcEEEEEecccc--------chhhhccccccCCCceEEEcccCCCCCCeEEEecCCC
Confidence            4 5667777654   68899999999999997532        1112222334456677777766554    99999999


Q ss_pred             cEEEEeCCCC---ceEEEEeccCC------------CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcE
Q 004214          403 TACVWRLPDL---VSVVTFRGHKR------------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV  467 (768)
Q Consensus       403 ~i~i~d~~~~---~~~~~~~~~~~------------~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v  467 (768)
                      .|++|++...   .....+.+|..            +|++++|+|++++|++++.||.|++||+.+++++..+.+|..+|
T Consensus       239 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  318 (368)
T 3mmy_A          239 RVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPI  318 (368)
T ss_dssp             EEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCE
T ss_pred             cEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCc
Confidence            9999999887   66778888876            79999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214          468 LRASFLTRGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       468 ~~~~~s~~~~~l~s~~~dg~i~iwd~  493 (768)
                      ++++|+|+|++|++++.|+..+.|++
T Consensus       319 ~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          319 SACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             EEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             eEEEECCCCCeEEEEecccccccccc
Confidence            99999999999999999886555543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=5.6e-33  Score=284.94  Aligned_cols=282  Identities=21%  Similarity=0.330  Sum_probs=229.8

Q ss_pred             EEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEec--CccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeee
Q 004214           33 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD--KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKL  110 (768)
Q Consensus        33 V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~--~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~  110 (768)
                      .++|+||+++   +||+| .|++|+|||+.+++++..+.  +|...|++++|+|++++|++|+.||.|++||+++++++.
T Consensus        28 ~~~l~WS~~~---~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~  103 (318)
T 4ggc_A           28 LNLVDWSSGN---VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR  103 (318)
T ss_dssp             CBCEEECTTS---EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             ceEEEECCCC---EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE
Confidence            4789999874   37766 49999999999999887764  678889999999999999999999999999998765433


Q ss_pred             eeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcc
Q 004214          111 TVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSK  190 (768)
Q Consensus       111 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  190 (768)
                      .+                                                                              
T Consensus       104 ~~------------------------------------------------------------------------------  105 (318)
T 4ggc_A          104 NM------------------------------------------------------------------------------  105 (318)
T ss_dssp             EE------------------------------------------------------------------------------
T ss_pred             Ee------------------------------------------------------------------------------
Confidence            22                                                                              


Q ss_pred             cceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECC
Q 004214          191 RGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS  270 (768)
Q Consensus       191 ~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~  270 (768)
                                                                                                      
T Consensus       106 --------------------------------------------------------------------------------  105 (318)
T 4ggc_A          106 --------------------------------------------------------------------------------  105 (318)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc-eEEEeeecccCcEEEEEEecCCCcEEEEEeCC
Q 004214          271 SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD  349 (768)
Q Consensus       271 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  349 (768)
                              .+|...+.++.    ..+. ++++|+.++.+++|+.... ..+..+.+|...+..+.+.+++. ++++++.|
T Consensus       106 --------~~h~~~~~~~~----~~~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d  171 (318)
T 4ggc_A          106 --------TSHSARVGSLS----WNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGND  171 (318)
T ss_dssp             --------ECCSSCEEEEE----EETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETT
T ss_pred             --------cCccceEEEee----cCCC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecC
Confidence                    22333333332    2233 4888999999999988764 45667889999999999999976 89999999


Q ss_pred             CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE---EEEeCCCcEEEEeCCCCceEEEEeccCCCeE
Q 004214          350 HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV---CTGSQDRTACVWRLPDLVSVVTFRGHKRGIW  426 (768)
Q Consensus       350 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~  426 (768)
                      |.|++||+..+..      ..........+...|.+++++|++..+   ++++.+++|++||........... +...+.
T Consensus       172 ~~i~iwd~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~  244 (318)
T 4ggc_A          172 NLVNVWPSAPGEG------GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVC  244 (318)
T ss_dssp             SCEEEEESSCBTT------BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEE
T ss_pred             cceeEEECCCCcc------cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeee
Confidence            9999999986532      122344456678899999999976533   456788999999998887766554 778899


Q ss_pred             EEEEccCCCEEEEee--CCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe
Q 004214          427 SVEFSPVDQVVITAS--GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE  497 (768)
Q Consensus       427 ~v~~s~~~~~l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  497 (768)
                      .+.|+|++..+++++  .|+.|++||+.+++++.++.+|.+.|++++|+|+|++|++|+.||+|+|||+.+..
T Consensus       245 ~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          245 SILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             eeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            999999999887754  79999999999999999999999999999999999999999999999999997654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.4e-33  Score=302.84  Aligned_cols=292  Identities=28%  Similarity=0.460  Sum_probs=230.2

Q ss_pred             EcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004214           27 KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDY  106 (768)
Q Consensus        27 ~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~  106 (768)
                      .+|...|+|++|  +++.  +++|+.||.|++||+.+++.+..+.+|.+.|.+++|  ++++|++++.||.|++||+.++
T Consensus       130 ~~~~~~v~~~~~--d~~~--l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~  203 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQK--IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG  203 (435)
T ss_dssp             CSSCCCEEEEEC--CSSE--EEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred             cCCCCcEEEEEE--CCCE--EEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence            457778999887  5566  999999999999999999999999999999999998  7889999999999999998765


Q ss_pred             eeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccc
Q 004214          107 SCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEM  186 (768)
Q Consensus       107 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~  186 (768)
                      +++.                                                                            
T Consensus       204 ~~~~----------------------------------------------------------------------------  207 (435)
T 1p22_A          204 EMLN----------------------------------------------------------------------------  207 (435)
T ss_dssp             CEEE----------------------------------------------------------------------------
T ss_pred             cEEE----------------------------------------------------------------------------
Confidence            4221                                                                            


Q ss_pred             cCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004214          187 DDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQV  266 (768)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i  266 (768)
                                                                                                      
T Consensus       208 --------------------------------------------------------------------------------  207 (435)
T 1p22_A          208 --------------------------------------------------------------------------------  207 (435)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE---EeeecccCcEEEEEEecCCCcEE
Q 004214          267 YDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV---GVGTGHMGAVGAVAFSKKLQNFL  343 (768)
Q Consensus       267 ~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l  343 (768)
                                .+.+|...|.++.  +.  ++ ++++|+.||.|++||+.++...   ..+.+|...|.++++..   .++
T Consensus       208 ----------~~~~h~~~v~~l~--~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l  269 (435)
T 1p22_A          208 ----------TLIHHCEAVLHLR--FN--NG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYI  269 (435)
T ss_dssp             ----------EECCCCSCEEEEE--CC--TT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEE
T ss_pred             ----------EEcCCCCcEEEEE--Ec--CC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCC---CEE
Confidence                      2233555566664  22  23 4888888888888888776544   56778999999999943   389


Q ss_pred             EEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCC
Q 004214          344 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR  423 (768)
Q Consensus       344 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  423 (768)
                      ++|+.||.|++||+...          ........|...|.+++++  +.++++|+.||.|++||+.+++.+..+.+|..
T Consensus       270 ~s~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~  337 (435)
T 1p22_A          270 VSASGDRTIKVWNTSTC----------EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE  337 (435)
T ss_dssp             EEEETTSEEEEEETTTC----------CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             EEEeCCCeEEEEECCcC----------cEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC
Confidence            99999999999999843          3556677899999999984  68999999999999999999999999999999


Q ss_pred             CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc---------eeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214          424 GIWSVEFSPVDQVVITASGDKTIKIWSISDGS---------CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR  494 (768)
Q Consensus       424 ~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  494 (768)
                      .|.+++|  ++.+|++|+.||.|++||+.++.         ++..+.+|...|++++|  ++++|++++.||.|++||+.
T Consensus       338 ~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          338 LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL  413 (435)
T ss_dssp             CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--
T ss_pred             cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECC
Confidence            9999999  68999999999999999997766         88999999999999999  78899999999999999998


Q ss_pred             CCeEEEEeccCCCcEEEEEEc
Q 004214          495 TGECIATYDKHEDKIWALAVG  515 (768)
Q Consensus       495 ~~~~~~~~~~~~~~v~~l~~s  515 (768)
                      ++....... ...+..++.|.
T Consensus       414 ~~~~~~~~~-~~~~~~~~~~~  433 (435)
T 1p22_A          414 NDPAAQAEP-PRSPSRTYTYI  433 (435)
T ss_dssp             ---------------------
T ss_pred             CCCCcccCC-CCCCccceeee
Confidence            876655443 33445555544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.3e-34  Score=295.93  Aligned_cols=249  Identities=24%  Similarity=0.371  Sum_probs=207.7

Q ss_pred             eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce--EEEeeecccCcEEEEEEecC-CCcEEEEEeCCCeEE
Q 004214          277 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC--CVGVGTGHMGAVGAVAFSKK-LQNFLVSGSSDHTIK  353 (768)
Q Consensus       277 ~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~  353 (768)
                      .+.+|...|.+++  +.+++.. |++|+.|++|++||+.++.  .+..+.+|.++|.+++|+|+ ...+|++++.|++|+
T Consensus         8 ~~~~H~~~V~~v~--~s~~g~~-lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~   84 (316)
T 3bg1_A            8 VDTSHEDMIHDAQ--MDYYGTR-LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI   84 (316)
T ss_dssp             ------CCEEEEE--ECGGGCE-EEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred             ecccccCeEEEee--EcCCCCE-EEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence            4578999999998  7777765 9999999999999998764  46778899999999999763 234799999999999


Q ss_pred             EEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCce---EEEEeccCCCeEEE
Q 004214          354 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDLVS---VVTFRGHKRGIWSV  428 (768)
Q Consensus       354 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~v  428 (768)
                      +||+..+        .......+.+|...|++++|+|+  +.+|++|+.|++|++||+.+...   ...+.+|...|.++
T Consensus        85 iWd~~~~--------~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~  156 (316)
T 3bg1_A           85 IWREENG--------TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAV  156 (316)
T ss_dssp             EECCSSS--------CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCC
T ss_pred             EEECCCC--------cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceE
Confidence            9998743        12234456789999999999997  88999999999999999987632   34456799999999


Q ss_pred             EEccC-----------------CCEEEEeeCCCcEEEEeCCCC---ceeEEeecCCCcEEEEEEEeCC----CEEEEEeC
Q 004214          429 EFSPV-----------------DQVVITASGDKTIKIWSISDG---SCLKTFEGHTSSVLRASFLTRG----AQIVSCGA  484 (768)
Q Consensus       429 ~~s~~-----------------~~~l~t~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~----~~l~s~~~  484 (768)
                      +|+|+                 +++|++|+.|++|++||+..+   .++..+.+|...|.+++|+|++    ++|++++.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~  236 (316)
T 3bg1_A          157 SWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ  236 (316)
T ss_dssp             EECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET
T ss_pred             EEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC
Confidence            99997                 478999999999999999755   4677889999999999999986    89999999


Q ss_pred             CCcEEEEECCCC---e-EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          485 DGLVKLWTVRTG---E-CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       485 dg~i~iwd~~~~---~-~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      ||+|++|++.+.   + ....+..|...|++++|+|++++|++++.||.|++|+..
T Consensus       237 D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          237 DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             TCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             CCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            999999998763   1 223445688999999999999999999999999999975

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.1e-33  Score=281.47  Aligned_cols=250  Identities=22%  Similarity=0.318  Sum_probs=212.0

Q ss_pred             eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC--ceeeeeeeCCccceEEEeeeeecC-CCEEEEEEeCCCeEE
Q 004214          234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS--MSCSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSVR  310 (768)
Q Consensus       234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~--~~~~~~~~~~~~~v~~l~~~~~~~-~~~~l~~~~~dg~i~  310 (768)
                      .+.+|...|.+++|++ ++++|++|+.|+.|++||+..  .+....+.+|..+|.+++  +.++ .+.+|++|+.||+|+
T Consensus         4 ~~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~--~s~~~~g~~l~s~s~D~~v~   80 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVD--WAHPKFGTILASCSYDGKVM   80 (297)
T ss_dssp             ECCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEE--ECCGGGCSEEEEEETTTEEE
T ss_pred             eccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEE--ecCCCcCCEEEEEcCCCEEE
Confidence            3568899999999984 788999999999999999974  467788999999999997  5443 234599999999999


Q ss_pred             EEeCCCce--EEEeeecccCcEEEEEEecCC-CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEE
Q 004214          311 LWDSESRC--CVGVGTGHMGAVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA  387 (768)
Q Consensus       311 iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  387 (768)
                      +||+.++.  .+..+.+|...|.+++|+|+. ..+|++++.|+.|++||++....        ........|...|.+++
T Consensus        81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~--------~~~~~~~~h~~~v~~~~  152 (297)
T 2pm7_B           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT--------TSPIIIDAHAIGVNSAS  152 (297)
T ss_dssp             EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC--------BCCEEEECCSSCEEEEE
T ss_pred             EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc--------eeeeeeecccCccceEe
Confidence            99998774  556677899999999999972 34899999999999999975321        11345678999999999


Q ss_pred             EccC-------------CCEEEEEeCCCcEEEEeCCCCc----eEEEEeccCCCeEEEEEccCC---CEEEEeeCCCcEE
Q 004214          388 VAPN-------------DSLVCTGSQDRTACVWRLPDLV----SVVTFRGHKRGIWSVEFSPVD---QVVITASGDKTIK  447 (768)
Q Consensus       388 ~s~~-------------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~v~~s~~~---~~l~t~~~d~~i~  447 (768)
                      |+|+             +++|++|+.|++|++||++++.    ....+.+|...|.+++|+|++   .+|++++.|++|+
T Consensus       153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~  232 (297)
T 2pm7_B          153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI  232 (297)
T ss_dssp             ECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred             ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEE
Confidence            9997             5799999999999999998765    567788999999999999984   8999999999999


Q ss_pred             EEeCCCCc---eeEEe--ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214          448 IWSISDGS---CLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR  494 (768)
Q Consensus       448 iwd~~~~~---~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  494 (768)
                      |||+.++.   ....+  .+|...|.+++|+|+|++|++++.||.|++|+..
T Consensus       233 iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            99997753   12233  4688899999999999999999999999999976

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.8e-33  Score=302.21  Aligned_cols=324  Identities=14%  Similarity=0.219  Sum_probs=236.9

Q ss_pred             CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe-----------eEEEecCcc------------ceeEEEEEcCC
Q 004214           29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK-----------CVATLDKHF------------SRVTSMAITSD   85 (768)
Q Consensus        29 h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~-----------~~~~l~~h~------------~~V~~l~fs~d   85 (768)
                      |.+.|++++|+|+|++  ||+|+.||.|+|||+.+++           .+..+.+|.            +.|++++|+|+
T Consensus        27 ~~~~V~~v~~s~~g~~--la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           27 EADIISTVEFNHSGEL--LATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             GGGSEEEEEECSSSSE--EEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             ccCcEEEEEECCCCCE--EEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence            6889999999999987  9999999999999998877           588899998            88999999999


Q ss_pred             C--CEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEE
Q 004214           86 G--STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVR  163 (768)
Q Consensus        86 ~--~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~  163 (768)
                      +  .+|++++.|+.|++||+.++.........          .+                              .+|.+.
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~----------~~------------------------------~~g~~~  144 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNL----------KE------------------------------EDGRYR  144 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSC----------C-------------------------------------
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecc----------cC------------------------------cccccc
Confidence            8  89999999999999998765432111000          00                              000000


Q ss_pred             EEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCcee
Q 004214          164 MWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEIL  243 (768)
Q Consensus       164 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  243 (768)
                        ....                              .           ..+             ..             .
T Consensus       145 --~~~~------------------------------~-----------~~~-------------~~-------------~  155 (447)
T 3dw8_B          145 --DPTT------------------------------V-----------TTL-------------RV-------------P  155 (447)
T ss_dssp             ---CCC------------------------------C-----------CSC-------------CC-------------C
T ss_pred             --Cccc------------------------------c-----------cce-------------Ee-------------c
Confidence              0000                              0           000             00             0


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEECCCceeeee-eeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-ceEEE
Q 004214          244 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV-LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVG  321 (768)
Q Consensus       244 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~  321 (768)
                      .+  .+ .+ ..             .. ...... ..+|...|.+++  +.+++.. |++| .||.|++||+.+ +..+.
T Consensus       156 ~~--~~-~~-~~-------------~~-~~~~~~~~~~h~~~v~~~~--~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~  213 (447)
T 3dw8_B          156 VF--RP-MD-LM-------------VE-ASPRRIFANAHTYHINSIS--INSDYET-YLSA-DDLRINLWHLEITDRSFN  213 (447)
T ss_dssp             EE--EE-EE-EE-------------EE-EEEEEEECSCCSSCCCEEE--ECTTSSE-EEEE-CSSEEEEEETTEEEEEEE
T ss_pred             cc--cc-hh-ee-------------ee-ccceEEeccCCCcceEEEE--EcCCCCE-EEEe-CCCeEEEEECCCCCceee
Confidence            00  00 00 00             00 011122 367899999997  7777665 8888 799999999994 44444


Q ss_pred             -------eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccC------------CC
Q 004214          322 -------VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG------------KD  382 (768)
Q Consensus       322 -------~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------~~  382 (768)
                             .+.+|...|.+++|+|++..++++|+.||.|++||++......      .....+..|.            ..
T Consensus       214 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  287 (447)
T 3dw8_B          214 IVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD------RHSKLFEEPEDPSNRSFFSEIISS  287 (447)
T ss_dssp             EEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC------TTCEEECCC-----CCHHHHHTTC
T ss_pred             eeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc------ceeeEeccCCCccccccccccCce
Confidence                   3568999999999999985699999999999999998653211      1123344444            38


Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEeCCC-CceEEEEeccCCC---------------eEEEEEccCCCEEEEeeCCCcE
Q 004214          383 INSLAVAPNDSLVCTGSQDRTACVWRLPD-LVSVVTFRGHKRG---------------IWSVEFSPVDQVVITASGDKTI  446 (768)
Q Consensus       383 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~---------------v~~v~~s~~~~~l~t~~~d~~i  446 (768)
                      |.+++|+|++++|++++. +.|++||+.+ ++++..+.+|...               +..++|+|++++|++|+.||.|
T Consensus       288 v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v  366 (447)
T 3dw8_B          288 ISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFF  366 (447)
T ss_dssp             EEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEE
T ss_pred             EEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEE
Confidence            999999999999999999 9999999997 8888888888642               3349999999999999999999


Q ss_pred             EEEeCCCCceeEEee---------------------------------cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214          447 KIWSISDGSCLKTFE---------------------------------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       447 ~iwd~~~~~~~~~~~---------------------------------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  493 (768)
                      ++||+.+++.+. +.                                 .+...|..++|+|++++|++++.++ +++|.-
T Consensus       367 ~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          367 RMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             EEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred             EEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence            999999887653 22                                 2345788999999999999998876 778864


Q ss_pred             C
Q 004214          494 R  494 (768)
Q Consensus       494 ~  494 (768)
                      +
T Consensus       445 ~  445 (447)
T 3dw8_B          445 K  445 (447)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.1e-32  Score=285.92  Aligned_cols=283  Identities=18%  Similarity=0.184  Sum_probs=240.1

Q ss_pred             ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce---eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEE
Q 004214          235 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS---CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL  311 (768)
Q Consensus       235 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~i  311 (768)
                      ..+|.+.|.+++|++ ++.++++++.++.|++|++.++.   ....+.+|...|.+++  +.+++..++++|+.||.|++
T Consensus         7 ~~~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            7 EQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN--FIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             SSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEE--EEESSSEEEEEEETTSCEEE
T ss_pred             ccCCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEE--ECCCCCcEEEEEcCCCeEEE
Confidence            347889999999996 67899999999999999998876   3455668999999998  77777614999999999999


Q ss_pred             EeC-CCceEEEeeec--ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEE
Q 004214          312 WDS-ESRCCVGVGTG--HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV  388 (768)
Q Consensus       312 wd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  388 (768)
                      ||+ .++.. ..+.+  |...|.+++|+| +. ++++++.|+.|++||+........ ........... |...|.+++|
T Consensus        84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~-~~~~v~~~~~  158 (342)
T 1yfq_A           84 VDLIGSPSF-QALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVI-AVKNLNSNNTK-VKNKIFTMDT  158 (342)
T ss_dssp             ECSSSSSSE-EECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCE-EEEESCSSSSS-SCCCEEEEEE
T ss_pred             EEeccCCce-EeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccc-cccCCeeeEEe-eCCceEEEEe
Confidence            999 87765 66778  999999999999 44 899999999999999874100000 00011122222 7789999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEeCCC-Cc--eEEEEeccCCCeEEEEEcc-CCCEEEEeeCCCcEEEEeCCCC------ceeE
Q 004214          389 APNDSLVCTGSQDRTACVWRLPD-LV--SVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDG------SCLK  458 (768)
Q Consensus       389 s~~~~~l~~~~~dg~i~i~d~~~-~~--~~~~~~~~~~~v~~v~~s~-~~~~l~t~~~d~~i~iwd~~~~------~~~~  458 (768)
                      +|++  +++++.|+.|++||+++ +.  .......|...|.+++|+| +++++++++.||.|++|++...      +...
T Consensus       159 ~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~  236 (342)
T 1yfq_A          159 NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence            9987  99999999999999988 54  3345556888999999999 9999999999999999999887      8888


Q ss_pred             EeecCCC---------cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccC-CCcEEEEEEcCCCCEEEEEeCCC
Q 004214          459 TFEGHTS---------SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH-EDKIWALAVGKKTEMFATGGSDA  528 (768)
Q Consensus       459 ~~~~~~~---------~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~s~~~dg  528 (768)
                      .+.+|..         .|++++|+|++++|++++.||.|++||+.+++++..+.+| ..+|++++  |++++|++++.||
T Consensus       237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg  314 (342)
T 1yfq_A          237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD  314 (342)
T ss_dssp             EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred             eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence            9988866         9999999999999999999999999999999999999998 99999999  9999999999999


Q ss_pred             c
Q 004214          529 L  529 (768)
Q Consensus       529 ~  529 (768)
                      .
T Consensus       315 ~  315 (342)
T 1yfq_A          315 T  315 (342)
T ss_dssp             H
T ss_pred             c
Confidence            8

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.4e-33  Score=301.48  Aligned_cols=284  Identities=14%  Similarity=0.235  Sum_probs=234.8

Q ss_pred             ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce-----------eeeeeeCCc------------cceEEEeeeee
Q 004214          237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS-----------CSYVLAGHS------------EIVLCLDTCAL  293 (768)
Q Consensus       237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-----------~~~~~~~~~------------~~v~~l~~~~~  293 (768)
                      .+.+.|.+++|++ ++.+|++|+.||.|++|++.++.           ....+.+|.            ..|.++.  +.
T Consensus        26 ~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~--~~  102 (447)
T 3dw8_B           26 AEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR--WL  102 (447)
T ss_dssp             CGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE--EC
T ss_pred             cccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEE--Ec
Confidence            3567899999986 78999999999999999999877           477888998            8899998  66


Q ss_pred             cCCC-EEEEEEeCCCeEEEEeCCCceEE---------------------------------------Ee-eecccCcEEE
Q 004214          294 SSGK-ILIVTGSKDNSVRLWDSESRCCV---------------------------------------GV-GTGHMGAVGA  332 (768)
Q Consensus       294 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~  332 (768)
                      +++. .++++++.||.|++||+.++...                                       .. ..+|...|.+
T Consensus       103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  182 (447)
T 3dw8_B          103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS  182 (447)
T ss_dssp             CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred             CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence            6652 34999999999999998765432                                       12 3679999999


Q ss_pred             EEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceee-------EeeccCCCeEEEEEccCC-CEEEEEeCCCcE
Q 004214          333 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA-------VVAAHGKDINSLAVAPND-SLVCTGSQDRTA  404 (768)
Q Consensus       333 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i  404 (768)
                      ++|+|++. +|++| .|+.|++||+....         ....       ....|...|++++|+|++ .+|++|+.||.|
T Consensus       183 ~~~~~~~~-~l~s~-~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          183 ISINSDYE-TYLSA-DDLRINLWHLEITD---------RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI  251 (447)
T ss_dssp             EEECTTSS-EEEEE-CSSEEEEEETTEEE---------EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             EEEcCCCC-EEEEe-CCCeEEEEECCCCC---------ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence            99999966 78888 89999999997321         1111       245789999999999998 999999999999


Q ss_pred             EEEeCCCCce----EEEEeccCC------------CeEEEEEccCCCEEEEeeCCCcEEEEeCCC-CceeEEeecCCCc-
Q 004214          405 CVWRLPDLVS----VVTFRGHKR------------GIWSVEFSPVDQVVITASGDKTIKIWSISD-GSCLKTFEGHTSS-  466 (768)
Q Consensus       405 ~i~d~~~~~~----~~~~~~~~~------------~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~-~~~~~~~~~~~~~-  466 (768)
                      ++||+++++.    ...+.+|..            .|.+++|+|++++|++++. +.|++||+++ ++++..+.+|... 
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~  330 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR  330 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence            9999999886    788888876            8999999999999999999 9999999997 8999999988642 


Q ss_pred             --------------EEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec-----------------------------
Q 004214          467 --------------VLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-----------------------------  503 (768)
Q Consensus       467 --------------v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------------------------  503 (768)
                                    +..++|+|++++|++|+.||.|++||+.+++.+....                             
T Consensus       331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (447)
T 3dw8_B          331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISV  410 (447)
T ss_dssp             TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEG
T ss_pred             ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccc
Confidence                          3349999999999999999999999999988764110                             


Q ss_pred             ---cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          504 ---KHEDKIWALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       504 ---~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                         .+...|.+++|+|++++||+++.++ +++|...
T Consensus       411 ~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          411 DSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             GGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             cccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence               2345788999999999999998886 7777643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-33  Score=302.23  Aligned_cols=330  Identities=14%  Similarity=0.206  Sum_probs=250.0

Q ss_pred             EEEeecCCCcEEEEECCC---CE---EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECC---CCeeEEEecC
Q 004214            2 FALLEGADRKVLVWDVDG---GF---CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL---AKKCVATLDK   72 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~---~~---~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~---~~~~~~~l~~   72 (768)
                      +||+|+.||.|+|||+.+   +.   ....+ +|.+.|++++|+|+++.  |++|+.||+|++||+.   +++.+..+.+
T Consensus        78 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~--l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  154 (437)
T 3gre_A           78 YLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDA--FAVSSKDGQIIVLKVNHYQQESEVKFLNC  154 (437)
T ss_dssp             EEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSE--EEEEETTSEEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCE--EEEEeCCCEEEEEEeccccCCceeecccc
Confidence            789999999999999976   43   22333 59999999999998887  9999999999999994   5555544433


Q ss_pred             ------------ccceeEEEE--EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccc
Q 004214           73 ------------HFSRVTSMA--ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN  138 (768)
Q Consensus        73 ------------h~~~V~~l~--fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  138 (768)
                                  +...+.++.  +++++.+|++++.|+.|++||+.+++++..+..                        
T Consensus       155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------------------------  210 (437)
T 3gre_A          155 ECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN------------------------  210 (437)
T ss_dssp             EEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC------------------------
T ss_pred             ceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc------------------------
Confidence                        344566666  567899999999999999999988765443321                        


Q ss_pred             hhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEe
Q 004214          139 QQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYT  218 (768)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~  218 (768)
                                                                                                      
T Consensus       211 --------------------------------------------------------------------------------  210 (437)
T 3gre_A          211 --------------------------------------------------------------------------------  210 (437)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee-CCccceEEEeee-eecCC
Q 004214          219 TVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-GHSEIVLCLDTC-ALSSG  296 (768)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~-~~~~~  296 (768)
                                       ..|...|.+++|++ ++.++++++.+|.|++||+.++..+..+. .|...|.++.++ .+.++
T Consensus       211 -----------------~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~  272 (437)
T 3gre_A          211 -----------------SPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKN  272 (437)
T ss_dssp             -----------------CGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTT
T ss_pred             -----------------CCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCC
Confidence                             01345677788764 57899999999999999999999888876 788899999643 12234


Q ss_pred             CEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe
Q 004214          297 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV  376 (768)
Q Consensus       297 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  376 (768)
                      +.++++|+.||.|++||+.+++++..+.+|...+..+.|+|++.. +    .+..     +                 .-
T Consensus       273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l----~~~~-----~-----------------~~  325 (437)
T 3gre_A          273 SVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKG-L----EELN-----F-----------------CG  325 (437)
T ss_dssp             EEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSS-G----GGCC-----C-----------------CC
T ss_pred             ccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccc-c----ccce-----e-----------------cc
Confidence            556999999999999999999999999999999988889888653 2    1110     0                 00


Q ss_pred             eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCC---CeEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 004214          377 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR---GIWSVEFSPVDQVVITASGDKTIKIWSISD  453 (768)
Q Consensus       377 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~  453 (768)
                      ..|...|++++|+ ++++|++|+.||.|++||+.+++....+.+|..   .+....++++..+++..        |+...
T Consensus       326 ~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~  396 (437)
T 3gre_A          326 IRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK--------MKRTS  396 (437)
T ss_dssp             CCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE--------CC---
T ss_pred             cccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEe--------ccccc
Confidence            2377889999999 789999999999999999999999999988643   45566666666555544        34444


Q ss_pred             CceeEEeecCCCcEEEEEEEeC--CCEEEEEeCCCcEEEEE
Q 004214          454 GSCLKTFEGHTSSVLRASFLTR--GAQIVSCGADGLVKLWT  492 (768)
Q Consensus       454 ~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd  492 (768)
                      +.....+..|...|++++|+++  +.+|++|+.||.|+||+
T Consensus       397 ~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          397 THSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ----------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            5555666779999999999998  77999999999999995

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.2e-32  Score=286.36  Aligned_cols=309  Identities=15%  Similarity=0.228  Sum_probs=227.4

Q ss_pred             EEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC----eeEEEecCccceeEEEEEcC--CCCEEEEEeCCCe
Q 004214           24 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK----KCVATLDKHFSRVTSMAITS--DGSTLISAGRDKV   97 (768)
Q Consensus        24 ~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~----~~~~~l~~h~~~V~~l~fs~--d~~~L~s~~~dg~   97 (768)
                      ..+.||.+.|++++|+|++++  |++|+.||.|++||+.++    +.+..+.+|...|++++|+|  ++++|++++.||.
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~   82 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRH--VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT   82 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSE--EEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             ccCcccccceeEEEEcCCCCE--EEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence            467899999999999999887  999999999999999876    57788899999999999999  6999999999999


Q ss_pred             EEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecC
Q 004214           98 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS  177 (768)
Q Consensus        98 i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~  177 (768)
                      |++||+.++.......                                                                
T Consensus        83 v~vwd~~~~~~~~~~~----------------------------------------------------------------   98 (351)
T 3f3f_A           83 VKLWEEDPDQEECSGR----------------------------------------------------------------   98 (351)
T ss_dssp             EEEEEECTTSCTTSSC----------------------------------------------------------------
T ss_pred             EEEEecCCCccccccc----------------------------------------------------------------
Confidence            9999987653210000                                                                


Q ss_pred             CceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCC-CCEEE
Q 004214          178 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE-EQYLA  256 (768)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~  256 (768)
                                                                        .......+.+|...|.+++|++.. +.+++
T Consensus        99 --------------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  128 (351)
T 3f3f_A           99 --------------------------------------------------RWNKLCTLNDSKGSLYSVKFAPAHLGLKLA  128 (351)
T ss_dssp             --------------------------------------------------SEEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred             --------------------------------------------------CcceeeeecccCCceeEEEEcCCCCCcEEE
Confidence                                                              111223344677789999998643 78999


Q ss_pred             EEeCCCcEEEEECCCceeeeeee-------------CCccceEEEeeeeecC--CCEEEEEEeCCCeEEEEeCCCceE--
Q 004214          257 VATNIEQVQVYDLSSMSCSYVLA-------------GHSEIVLCLDTCALSS--GKILIVTGSKDNSVRLWDSESRCC--  319 (768)
Q Consensus       257 ~~~~~~~i~i~d~~~~~~~~~~~-------------~~~~~v~~l~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~--  319 (768)
                      +++.++.|++||+.+++....+.             .|...+.++.  +.+.  +..++++++.++.+.+|+...+..  
T Consensus       129 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  206 (351)
T 3f3f_A          129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLS--WCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV  206 (351)
T ss_dssp             EEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEE--ECCCSSSCCEEEEEETTEEEEEEECTTSCEEE
T ss_pred             EecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEE--eccCCCCCcEEEEecCCCcEEEEccCCCceee
Confidence            99999999999998877554433             6888899998  5554  344599999999999998887765  


Q ss_pred             EEeeecccCcEEEEEEecCCC---cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214          320 VGVGTGHMGAVGAVAFSKKLQ---NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC  396 (768)
Q Consensus       320 ~~~~~~~~~~v~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  396 (768)
                      +..+.+|...|.+++|+|++.   .+|++++.||.|++||+.......          ....+...+.....++....++
T Consensus       207 ~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  276 (351)
T 3f3f_A          207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPL----------ASEESLTNSNMFDNSADVDMDA  276 (351)
T ss_dssp             EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred             eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcc----------ccCCcccceeccCCCccccccc
Confidence            677788999999999999973   589999999999999997542111          1111222233333333333333


Q ss_pred             EE----eCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214          397 TG----SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF  460 (768)
Q Consensus       397 ~~----~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~  460 (768)
                      .+    .....+.+|+..+.+.+..+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          277 QGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             --------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             ccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            33    33445667777777888899999999999999999999999999999999999987655443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-32  Score=288.24  Aligned_cols=262  Identities=19%  Similarity=0.305  Sum_probs=209.2

Q ss_pred             CEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECC--CCeeEEEecCccceeEEEEEcCC--CCEEEEEeCC
Q 004214           20 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL--AKKCVATLDKHFSRVTSMAITSD--GSTLISAGRD   95 (768)
Q Consensus        20 ~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~--~~~~~~~l~~h~~~V~~l~fs~d--~~~L~s~~~d   95 (768)
                      |+++..+.+|.+.|++++|+|++++  ||+|+.||.|+|||+.  +++.+..+.+|.+.|++++|+|+  +++|++++.|
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d   78 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKR--LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   78 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             CCccEEecCCcccEEEEEEcCCCCE--EEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence            4567789999999999999999887  9999999999999998  66788899999999999999987  9999999999


Q ss_pred             CeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeee
Q 004214           96 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ  175 (768)
Q Consensus        96 g~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~  175 (768)
                      |.|++||+.+++..                                                                  
T Consensus        79 g~v~iwd~~~~~~~------------------------------------------------------------------   92 (379)
T 3jrp_A           79 GKVLIWKEENGRWS------------------------------------------------------------------   92 (379)
T ss_dssp             SCEEEEEEETTEEE------------------------------------------------------------------
T ss_pred             CEEEEEEcCCCcee------------------------------------------------------------------
Confidence            99999997654210                                                                  


Q ss_pred             cCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEE
Q 004214          176 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL  255 (768)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  255 (768)
                                                                                                      
T Consensus        93 --------------------------------------------------------------------------------   92 (379)
T 3jrp_A           93 --------------------------------------------------------------------------------   92 (379)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecC--CCEEEEEEeCCCeEEEEeCCCc--eEEEeeecccCcEE
Q 004214          256 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS--GKILIVTGSKDNSVRLWDSESR--CCVGVGTGHMGAVG  331 (768)
Q Consensus       256 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~  331 (768)
                                        ....+..|...|.++.  +.++  +. ++++++.||.|++||+.++  .....+..|...|.
T Consensus        93 ------------------~~~~~~~~~~~v~~~~--~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~  151 (379)
T 3jrp_A           93 ------------------QIAVHAVHSASVNSVQ--WAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN  151 (379)
T ss_dssp             ------------------EEEEECCCSSCEEEEE--ECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEE
T ss_pred             ------------------EeeeecCCCcceEEEE--eCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecCCCCceE
Confidence                              0012233455566665  4444  44 4888888899999988776  33445678999999


Q ss_pred             EEEEecC------------CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC---CCEEE
Q 004214          332 AVAFSKK------------LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN---DSLVC  396 (768)
Q Consensus       332 ~~~~~~~------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~  396 (768)
                      +++|+|.            ...++++++.||.|++||++....      ..........|...|.+++|+|+   +++|+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~  225 (379)
T 3jrp_A          152 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ------TYVLESTLEGHSDWVRDVAWSPTVLLRSYLA  225 (379)
T ss_dssp             EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT------EEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred             EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc------ceeeEEEEecccCcEeEEEECCCCCCCCeEE
Confidence            9999994            244899999999999999975421      22344566789999999999999   89999


Q ss_pred             EEeCCCcEEEEeCCCCc---eEEEE--eccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce
Q 004214          397 TGSQDRTACVWRLPDLV---SVVTF--RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC  456 (768)
Q Consensus       397 ~~~~dg~i~i~d~~~~~---~~~~~--~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~  456 (768)
                      +++.||.|++||+.++.   ....+  ..|...|++++|+|++++|++++.||.|++|++..+..
T Consensus       226 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~  290 (379)
T 3jrp_A          226 SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK  290 (379)
T ss_dssp             EEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred             EEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence            99999999999998864   22222  33888999999999999999999999999999975543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.2e-30  Score=276.17  Aligned_cols=336  Identities=14%  Similarity=0.125  Sum_probs=260.7

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA   81 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~   81 (768)
                      ++++++.|+.|++||+.+++++..+.+|.. +.+++|+|+++. ++++++.|+.|++||+.+++.+..+..|. .+.+++
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~-l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~   80 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTK-VYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA   80 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSE-EEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCE-EEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence            688999999999999999999999987765 899999999885 34778899999999999999999988666 899999


Q ss_pred             EcCCCCEEEEEe-CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCc
Q 004214           82 ITSDGSTLISAG-RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG  160 (768)
Q Consensus        82 fs~d~~~L~s~~-~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  160 (768)
                      |+|++++|+.++ .++.|++||+.+++.+..+..                                              
T Consensus        81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~----------------------------------------------  114 (391)
T 1l0q_A           81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT----------------------------------------------  114 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----------------------------------------------
T ss_pred             ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC----------------------------------------------
Confidence            999999886555 569999999877653322110                                              


Q ss_pred             EEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCC
Q 004214          161 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE  240 (768)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (768)
                                                                                                      
T Consensus       115 --------------------------------------------------------------------------------  114 (391)
T 1l0q_A          115 --------------------------------------------------------------------------------  114 (391)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214          241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV  320 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  320 (768)
                                                               ...+.++.  +.++++.++++++.++.|++||+.+++.+
T Consensus       115 -----------------------------------------~~~~~~~~--~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  151 (391)
T 1l0q_A          115 -----------------------------------------GKSPLGLA--LSPDGKKLYVTNNGDKTVSVINTVTKAVI  151 (391)
T ss_dssp             -----------------------------------------SSSEEEEE--ECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             -----------------------------------------CCCcceEE--ECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence                                                     01223343  55666665578888999999999998888


Q ss_pred             EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-
Q 004214          321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-  399 (768)
Q Consensus       321 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-  399 (768)
                      ..+..+. .+.+++|+|+++.++++++.++.|++||+...          .... ...+...+.+++|+|+++++++++ 
T Consensus       152 ~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~----------~~~~-~~~~~~~~~~~~~~~~g~~l~~~~~  219 (391)
T 1l0q_A          152 NTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN----------SVID-TVKVEAAPSGIAVNPEGTKAYVTNV  219 (391)
T ss_dssp             EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT----------EEEE-EEECSSEEEEEEECTTSSEEEEEEE
T ss_pred             EEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCC----------eEEE-EEecCCCccceEECCCCCEEEEEec
Confidence            8877654 56899999998866678889999999999743          1222 233566789999999999999888 


Q ss_pred             --CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEE-EEeeCCCcEEEEeCCCCceeEEeecCCCcEE--------
Q 004214          400 --QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV-ITASGDKTIKIWSISDGSCLKTFEGHTSSVL--------  468 (768)
Q Consensus       400 --~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~--------  468 (768)
                        .++.|++||+.+++.+..+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++++..+..|..+..        
T Consensus       220 ~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (391)
T 1l0q_A          220 DKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSI  298 (391)
T ss_dssp             CSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEEC
T ss_pred             CcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecc
Confidence              68999999999999988888765 57899999999877 6678899999999999999998887655431        


Q ss_pred             -------EEEEEeCC----------CEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe---CCC
Q 004214          469 -------RASFLTRG----------AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGG---SDA  528 (768)
Q Consensus       469 -------~~~~s~~~----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~---~dg  528 (768)
                             ...|+.+.          ..+...+.|..+++|++.+|...    .+..+  ...|+++|.|.++..   .+|
T Consensus       299 ~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~----~~~~~--~~~~~~~g~y~~~~~~~~~~g  372 (391)
T 1l0q_A          299 PVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS----KKQNP--THTYSETGIYTVRLTVSNSNG  372 (391)
T ss_dssp             SSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE----CSSSC--EECCSSCEEEEEEEEEEETTE
T ss_pred             cccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc----CcCCC--eEEeCCCceEEEEEEEECCCC
Confidence                   11233322          34566667889999999888742    23333  357899998877543   555

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.8e-33  Score=285.08  Aligned_cols=252  Identities=21%  Similarity=0.272  Sum_probs=207.4

Q ss_pred             eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce--eeeeeeCCccceEEEeeeeecC-CCEEEEEEeCCCeE
Q 004214          233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSV  309 (768)
Q Consensus       233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~~-~~~~l~~~~~dg~i  309 (768)
                      ..+.+|.+.|.+++|++ ++++|++|+.|+.|++||+.++.  ....+.+|...|.+++  +.++ ++.+|++|+.|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~--~~~~~~~~~l~s~s~D~~v   83 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVA--WAHPMYGNILASCSYDRKV   83 (316)
T ss_dssp             -------CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEE--ECCGGGSSCEEEEETTSCE
T ss_pred             eecccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEE--eCCCCCCCEEEEEECCCEE
Confidence            34568999999999985 77899999999999999998764  4667899999999997  5443 23349999999999


Q ss_pred             EEEeCCCc--eEEEeeecccCcEEEEEEecCC-CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEE
Q 004214          310 RLWDSESR--CCVGVGTGHMGAVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL  386 (768)
Q Consensus       310 ~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  386 (768)
                      ++||+.++  .....+.+|...|.+++|+|+. ..+|++|+.|++|++||+....       ..........|...|.++
T Consensus        84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~-------~~~~~~~~~~h~~~v~~~  156 (316)
T 3bg1_A           84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG-------QWEVKKINNAHTIGCNAV  156 (316)
T ss_dssp             EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS-------CEEECCBTTSSSSCBCCC
T ss_pred             EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC-------CcceeeeeccccCCcceE
Confidence            99999887  4566778999999999999973 3479999999999999987431       111223445788899999


Q ss_pred             EEccC-----------------CCEEEEEeCCCcEEEEeCCCC---ceEEEEeccCCCeEEEEEccCC----CEEEEeeC
Q 004214          387 AVAPN-----------------DSLVCTGSQDRTACVWRLPDL---VSVVTFRGHKRGIWSVEFSPVD----QVVITASG  442 (768)
Q Consensus       387 ~~s~~-----------------~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~v~~s~~~----~~l~t~~~  442 (768)
                      +|+|+                 +++|++|+.|++|++||+...   +....+.+|...|.+++|+|++    ++|++++.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~  236 (316)
T 3bg1_A          157 SWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ  236 (316)
T ss_dssp             EECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET
T ss_pred             EEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC
Confidence            99997                 478999999999999999755   4667788999999999999986    89999999


Q ss_pred             CCcEEEEeCCCCc----eeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214          443 DKTIKIWSISDGS----CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR  494 (768)
Q Consensus       443 d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  494 (768)
                      |++|++||+.+..    ....+.+|...|.+++|+|+|++|++++.||.|++|+..
T Consensus       237 D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          237 DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             TCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             CCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            9999999987631    234566789999999999999999999999999999975

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.7e-32  Score=291.86  Aligned_cols=260  Identities=19%  Similarity=0.337  Sum_probs=226.9

Q ss_pred             eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC----------ceEEEeeecccCcEEEEEEecCCCcEEEE
Q 004214          276 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----------RCCVGVGTGHMGAVGAVAFSKKLQNFLVS  345 (768)
Q Consensus       276 ~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  345 (768)
                      .....|...|.+++  +.+.++.++++++.+|.|++|++.+          ...+..+.+|...|.+++|+|++..+|++
T Consensus       122 ~~~~~h~~~v~~l~--~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  199 (430)
T 2xyi_A          122 EIKINHEGEVNRAR--YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS  199 (430)
T ss_dssp             EEEEEESSCCSEEE--EETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred             EEEEcCCCcEEEEE--ECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence            34567999999998  7776666799999999999999976          56777888999999999999998778999


Q ss_pred             EeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC---ceEEEEecc
Q 004214          346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL---VSVVTFRGH  421 (768)
Q Consensus       346 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~  421 (768)
                      |+.||.|++|++.......   ...........|...|.+++|+| ++.+|++++.||.|++||++++   +.+..+..|
T Consensus       200 ~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  276 (430)
T 2xyi_A          200 ASDDHTICLWDINATPKEH---RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH  276 (430)
T ss_dssp             ECTTSCEEEEETTSCCBGG---GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred             EeCCCeEEEEeCCCCCCCC---ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence            9999999999998632111   11122445568999999999999 7889999999999999999987   577888899


Q ss_pred             CCCeEEEEEccCCC-EEEEeeCCCcEEEEeCCC-CceeEEeecCCCcEEEEEEEeCCC-EEEEEeCCCcEEEEECCC---
Q 004214          422 KRGIWSVEFSPVDQ-VVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRT---  495 (768)
Q Consensus       422 ~~~v~~v~~s~~~~-~l~t~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~---  495 (768)
                      ...|++++|+|++. ++++|+.||.|++||+++ +.++..+.+|...|++++|+|+++ +|++++.||.|++||+..   
T Consensus       277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~  356 (430)
T 2xyi_A          277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE  356 (430)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred             CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence            99999999999987 799999999999999998 578899999999999999999985 699999999999999987   


Q ss_pred             -----------CeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEEcCCHHH
Q 004214          496 -----------GECIATYDKHEDKIWALAVGKKTE-MFATGGSDALVNLWHDSTAAE  540 (768)
Q Consensus       496 -----------~~~~~~~~~~~~~v~~l~~s~~~~-~l~s~~~dg~v~vw~~~~~~~  540 (768)
                                 .+++..+.+|...|.+++|+|+++ +|++++.||.|++|++.+...
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~  413 (430)
T 2xyi_A          357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY  413 (430)
T ss_dssp             CCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHH
T ss_pred             ccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccccc
Confidence                       477888889999999999999999 899999999999999986544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.5e-32  Score=282.02  Aligned_cols=260  Identities=16%  Similarity=0.277  Sum_probs=223.8

Q ss_pred             eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc----eEEEeeecccCcEEEEEEecC-CCcEEEEEeCCC
Q 004214          276 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR----CCVGVGTGHMGAVGAVAFSKK-LQNFLVSGSSDH  350 (768)
Q Consensus       276 ~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg  350 (768)
                      ..+.+|...|.+++  +.+++.. |++|+.||.|++||+.++    +....+.+|...|.+++|+|. ...+|++++.||
T Consensus         5 ~~~~gH~~~v~~~~--~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg   81 (351)
T 3f3f_A            5 PFDSGHDDLVHDVV--YDFYGRH-VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK   81 (351)
T ss_dssp             CEECCCSSCEEEEE--ECSSSSE-EEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ccCcccccceeEEE--EcCCCCE-EEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence            35689999999998  7777665 999999999999999876    567778899999999999994 244899999999


Q ss_pred             eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCceEEEEe---------
Q 004214          351 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDLVSVVTFR---------  419 (768)
Q Consensus       351 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------  419 (768)
                      .|++||+........ ............|...|.+++|+|+  +.++++++.||.|++||+.+++.+..+.         
T Consensus        82 ~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           82 TVKLWEEDPDQEECS-GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             CEEEEEECTTSCTTS-SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             eEEEEecCCCccccc-ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence            999999986532211 1122445666789999999999999  9999999999999999998876543332         


Q ss_pred             ----ccCCCeEEEEEccC---CCEEEEeeCCCcEEEEeCCCCce--eEEeecCCCcEEEEEEEeCC----CEEEEEeCCC
Q 004214          420 ----GHKRGIWSVEFSPV---DQVVITASGDKTIKIWSISDGSC--LKTFEGHTSSVLRASFLTRG----AQIVSCGADG  486 (768)
Q Consensus       420 ----~~~~~v~~v~~s~~---~~~l~t~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~----~~l~s~~~dg  486 (768)
                          +|...+.+++|+|+   +.++++++.|+.+.+|+...+..  +..+.+|...|++++|+|++    ++|++++.||
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg  240 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG  240 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred             cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence                57789999999997   89999999999998888887765  77888999999999999998    8999999999


Q ss_pred             cEEEEECCCC----------------------------------------------eEEEEeccCCCcEEEEEEcCCCCE
Q 004214          487 LVKLWTVRTG----------------------------------------------ECIATYDKHEDKIWALAVGKKTEM  520 (768)
Q Consensus       487 ~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~v~~l~~s~~~~~  520 (768)
                      .|++||+.++                                              +++..+.+|...|++++|+|++++
T Consensus       241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~  320 (351)
T 3f3f_A          241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI  320 (351)
T ss_dssp             CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred             eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence            9999999875                                              678888899999999999999999


Q ss_pred             EEEEeCCCcEEEEEcCCHH
Q 004214          521 FATGGSDALVNLWHDSTAA  539 (768)
Q Consensus       521 l~s~~~dg~v~vw~~~~~~  539 (768)
                      |++|+.||.|++|++.++.
T Consensus       321 l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          321 LSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             EEEEETTSCEEEEEECTTS
T ss_pred             EEEecCCCcEEEEecCcCc
Confidence            9999999999999998753

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=6.6e-33  Score=294.33  Aligned_cols=281  Identities=18%  Similarity=0.214  Sum_probs=234.3

Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEECCCce----eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc--
Q 004214          244 DLKFLGEEEQYLAVATNIEQVQVYDLSSMS----CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR--  317 (768)
Q Consensus       244 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--  317 (768)
                      .+++++....++++++.+|.|++|++....    ....+.+|...|.+++  +.+.++.+|++|+.||.|++||+.++  
T Consensus        39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~--~~p~~~~~l~s~s~dg~v~vw~~~~~~~  116 (402)
T 2aq5_A           39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIA--WCPHNDNVIASGSEDCTVMVWEIPDGGL  116 (402)
T ss_dssp             SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEE--ECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred             cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEE--eCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence            355554444455557889999999996642    3446789999999998  77734445999999999999999987  


Q ss_pred             -----eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe--eccCCCeEEEEEcc
Q 004214          318 -----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV--AAHGKDINSLAVAP  390 (768)
Q Consensus       318 -----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~  390 (768)
                           .++..+.+|...|.+++|+|++..++++++.||.|++||+..+          .....+  ..|...|.+++|+|
T Consensus       117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~  186 (402)
T 2aq5_A          117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG----------AAVLTLGPDVHPDTIYSVDWSR  186 (402)
T ss_dssp             SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT----------EEEEEECTTTCCSCEEEEEECT
T ss_pred             ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC----------CccEEEecCCCCCceEEEEECC
Confidence                 5677888999999999999998779999999999999999843          344455  67999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEE-eccCCC-eEEEEEccCCCEEEEe---eCCCcEEEEeCCCCce-eEEee-cC
Q 004214          391 NDSLVCTGSQDRTACVWRLPDLVSVVTF-RGHKRG-IWSVEFSPVDQVVITA---SGDKTIKIWSISDGSC-LKTFE-GH  463 (768)
Q Consensus       391 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~-v~~v~~s~~~~~l~t~---~~d~~i~iwd~~~~~~-~~~~~-~~  463 (768)
                      ++++|++++.||.|++||+++++.+..+ .+|... +.++.|+|++++|++|   +.|+.|++||+.++.. +.... .|
T Consensus       187 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~  266 (402)
T 2aq5_A          187 DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT  266 (402)
T ss_dssp             TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC
T ss_pred             CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccC
Confidence            9999999999999999999999999988 788776 8999999999999999   7999999999998765 33333 57


Q ss_pred             CCcEEEEEEEeCCCEEEE-EeCCCcEEEEECCCCeE-EEEecc--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          464 TSSVLRASFLTRGAQIVS-CGADGLVKLWTVRTGEC-IATYDK--HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       464 ~~~v~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      ...+.+++|+|++++|++ |+.||.|++||+.+++. +..+..  |..+|.+++|+|++.++++  .++.+++|++.++
T Consensus       267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~  343 (402)
T 2aq5_A          267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER  343 (402)
T ss_dssp             CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred             CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence            788999999999999975 55799999999999873 444433  5689999999999998775  4668999998764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-32  Score=285.91  Aligned_cols=254  Identities=24%  Similarity=0.379  Sum_probs=219.5

Q ss_pred             eeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC--CceEEEeeecccCcEEEEEEecCC-CcEEEEEeCC
Q 004214          273 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE--SRCCVGVGTGHMGAVGAVAFSKKL-QNFLVSGSSD  349 (768)
Q Consensus       273 ~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d  349 (768)
                      +....+.+|...|.+++  +.+++.. |++|+.||.|++||+.  ++..+..+.+|...|.+++|+++. ..+|++++.|
T Consensus         2 ~~~~~~~~h~~~v~~~~--~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d   78 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAV--LDYYGKR-LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   78 (379)
T ss_dssp             ---CCEEECCCCEEEEE--ECSSSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             CccEEecCCcccEEEEE--EcCCCCE-EEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence            45567889999999998  7777765 9999999999999998  667788889999999999998761 3489999999


Q ss_pred             CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCC--ceEEEEeccCCCe
Q 004214          350 HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKRGI  425 (768)
Q Consensus       350 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v  425 (768)
                      |.|++||+...        ..........|...|.+++|+|+  +.++++++.||.|++||+.+.  .....+.+|...|
T Consensus        79 g~v~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v  150 (379)
T 3jrp_A           79 GKVLIWKEENG--------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV  150 (379)
T ss_dssp             SCEEEEEEETT--------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCE
T ss_pred             CEEEEEEcCCC--------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCce
Confidence            99999998753        22355566779999999999999  999999999999999999887  3455677899999


Q ss_pred             EEEEEcc-------------CCCEEEEeeCCCcEEEEeCCCCc----eeEEeecCCCcEEEEEEEeC---CCEEEEEeCC
Q 004214          426 WSVEFSP-------------VDQVVITASGDKTIKIWSISDGS----CLKTFEGHTSSVLRASFLTR---GAQIVSCGAD  485 (768)
Q Consensus       426 ~~v~~s~-------------~~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~d  485 (768)
                      .+++|+|             ++.+|++++.||.|++||++++.    +...+.+|...|++++|+|+   +++|++++.|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d  230 (379)
T 3jrp_A          151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD  230 (379)
T ss_dssp             EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred             EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence            9999999             69999999999999999998764    55678899999999999999   8999999999


Q ss_pred             CcEEEEECCCCe-----EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          486 GLVKLWTVRTGE-----CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       486 g~i~iwd~~~~~-----~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      |.|++||+.++.     .+.....|...|++++|+|++++|++++.||.|++|++.+
T Consensus       231 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          231 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            999999999874     2233344889999999999999999999999999999874

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1e-31  Score=279.19  Aligned_cols=226  Identities=14%  Similarity=0.159  Sum_probs=178.4

Q ss_pred             cCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccccee
Q 004214          294 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK  373 (768)
Q Consensus       294 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  373 (768)
                      +.++.++++|+.|+.|++||..+++++..+. +...|.+++++++   .++++ .++.|++||+.....         ..
T Consensus        68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~---------~~  133 (355)
T 3vu4_A           68 HRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWK---------RI  133 (355)
T ss_dssp             TTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCC---------BS
T ss_pred             CCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCce---------ee
Confidence            4445545778888999999999999988876 6679999999986   34443 478999999986411         11


Q ss_pred             eEeeccCCCeEEEEEccCCCEEEE--EeCCCcEEEEeCCCCc---------------e-EEEEeccCCCeEEEEEccCCC
Q 004214          374 AVVAAHGKDINSLAVAPNDSLVCT--GSQDRTACVWRLPDLV---------------S-VVTFRGHKRGIWSVEFSPVDQ  435 (768)
Q Consensus       374 ~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~i~i~d~~~~~---------------~-~~~~~~~~~~v~~v~~s~~~~  435 (768)
                      .....   +...+++++  .++++  |+.||.|++||+.++.               + +..+.+|..+|++++|+|+|+
T Consensus       134 ~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~  208 (355)
T 3vu4_A          134 TDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD  208 (355)
T ss_dssp             SCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS
T ss_pred             EEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC
Confidence            11111   334566677  56666  5899999999999865               2 678899999999999999999


Q ss_pred             EEEEeeCCCc-EEEEeCCCCceeEEee-c-CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEE--EEe--------
Q 004214          436 VVITASGDKT-IKIWSISDGSCLKTFE-G-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI--ATY--------  502 (768)
Q Consensus       436 ~l~t~~~d~~-i~iwd~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~--------  502 (768)
                      +|++|+.|++ |++||+.+++++.++. + |...|++++|+|+|++|++++.||+|++||+..+...  ..+        
T Consensus       209 ~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~  288 (355)
T 3vu4_A          209 MVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY  288 (355)
T ss_dssp             EEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCC
T ss_pred             EEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccc
Confidence            9999999998 9999999999999998 6 9999999999999999999999999999999765311  111        


Q ss_pred             ------------c-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          503 ------------D-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       503 ------------~-~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                                  . .+..+...++|++++++|++++.||.+++|++..+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          289 FQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             CCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             cccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence                        0 11223466899999999999999999999998654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.2e-34  Score=298.08  Aligned_cols=304  Identities=9%  Similarity=0.005  Sum_probs=234.8

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEec-CccceeEEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD-KHFSRVTSM   80 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~-~h~~~V~~l   80 (768)
                      ++|+++.|++|+  |...++++   .||...|.+++|+|+|         .++.+.+|+.   +....+. .|...|.++
T Consensus        29 ~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg---------~~~~~~~~~~---~~~~~~~~~~~~~V~~v   91 (588)
T 2j04_A           29 LYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE---------FENKLDFELA---QQNGLLNSQPVCYPRVC   91 (588)
T ss_dssp             EEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC---------CCCTTTTSCC---CSSCSSTTSCSCCEEEE
T ss_pred             EEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC---------CcceEEEEeC---CCceEeecCCCCcEEEE
Confidence            689999999999  87777544   7999999999999988         3555555554   3333333 468889999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCc
Q 004214           81 AITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG  160 (768)
Q Consensus        81 ~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  160 (768)
                      +|||||++||+++.||.|++||.++  ++..+. +..                                           
T Consensus        92 awSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~-------------------------------------------  125 (588)
T 2j04_A           92 KPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKG-------------------------------------------  125 (588)
T ss_dssp             EECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSS-------------------------------------------
T ss_pred             EECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCC-------------------------------------------
Confidence            9999999999999999999999543  111111 000                                           


Q ss_pred             EEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCC
Q 004214          161 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE  240 (768)
Q Consensus       161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (768)
                                                                                                 .-...
T Consensus       126 ---------------------------------------------------------------------------~~~~~  130 (588)
T 2j04_A          126 ---------------------------------------------------------------------------NLSSR  130 (588)
T ss_dssp             ---------------------------------------------------------------------------CSTTT
T ss_pred             ---------------------------------------------------------------------------ccccc
Confidence                                                                                       00012


Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee-------eeee----eCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214          241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-------SYVL----AGHSEIVLCLDTCALSSGKILIVTGSKDNSV  309 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-------~~~~----~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i  309 (768)
                      .+.+++|+| ++++|++|+.||.|++||+.++..       +..+    .+|...|.+++  ++|++   +++++.|+.|
T Consensus       131 sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVa--wSPdg---Laass~D~tV  204 (588)
T 2j04_A          131 TYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIV--WYEDV---LVAALSNNSV  204 (588)
T ss_dssp             CEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEE--EETTE---EEEEETTCCE
T ss_pred             cEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEE--EcCCc---EEEEeCCCeE
Confidence            466777764 778888888888888888887752       4555    67888999998  77765   7888899999


Q ss_pred             EEEeCCCceE---EEee-ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214          310 RLWDSESRCC---VGVG-TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS  385 (768)
Q Consensus       310 ~iwd~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  385 (768)
                      ++||+.++..   ...+ .+|...|.+++|+  +. .+++++ +++|++||+...          .......+|...|..
T Consensus       205 rlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~----------~~~~~~~gh~~~V~~  270 (588)
T 2j04_A          205 FSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNY----------SISSLKTGSLENFHI  270 (588)
T ss_dssp             EEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTT----------EEEEEECSCCSCCCE
T ss_pred             EEEECCCCccccceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCC----------eEEEEEcCCCceEEE
Confidence            9999988773   3455 4788999999999  34 788887 699999998743          222333379999999


Q ss_pred             EEE--ccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC
Q 004214          386 LAV--APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH  463 (768)
Q Consensus       386 ~~~--s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~  463 (768)
                      ++|  +|++..+++++.||+ ++|..+                .++++|++..+++.  |+++++|+...+ .+..+.+ 
T Consensus       271 va~~~s~d~~~La~a~edG~-klw~~d----------------~~~~spd~~l~a~~--d~~v~lW~~~g~-~l~~~~~-  329 (588)
T 2j04_A          271 IPLNHEKESTILLMSNKTSY-KVLLED----------------ELHVTADNIIAPYL--EKKFKKWSTIWN-EFNNYET-  329 (588)
T ss_dssp             EEETTCSSCEEEEECSSCEE-EEEESS----------------SEEEECCCSSHHHH--HHHHHHTTTTTT-SSSSSCC-
T ss_pred             EEeeeCCCCCEEEEEcCCCC-EEEeec----------------cEEECCCceEEEEc--CCEEEEEECCCC-ceeeecc-
Confidence            999  999999999999999 999977                26699999888775  899999997544 4555654 


Q ss_pred             CCcEEEEEEEeCCCEEEEEeC
Q 004214          464 TSSVLRASFLTRGAQIVSCGA  484 (768)
Q Consensus       464 ~~~v~~~~~s~~~~~l~s~~~  484 (768)
                      ...|.+++|+|||+.+|+++.
T Consensus       330 ~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          330 TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             EEEEEEEEECTTSSEEEEEEE
T ss_pred             ceEEEEEEECCCCCEEEEEEe
Confidence            778999999999999998863

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.1e-31  Score=279.20  Aligned_cols=286  Identities=18%  Similarity=0.194  Sum_probs=238.4

Q ss_pred             EeeecccCCceeEEEEecCC--CCEEEEEeCCCcEEEEECCC-ceee-eeeeCCccceEEEeeeeecCCCEEEEEEeCCC
Q 004214          232 SKRLVGYNEEILDLKFLGEE--EQYLAVATNIEQVQVYDLSS-MSCS-YVLAGHSEIVLCLDTCALSSGKILIVTGSKDN  307 (768)
Q Consensus       232 ~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~~~~i~i~d~~~-~~~~-~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg  307 (768)
                      ...+.+|.+.|.+++|++..  +.+|++++.+|.|++||+.+ +... ..+.+|...|.++.  +.+++.. |++++.||
T Consensus        32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~-l~s~~~dg  108 (368)
T 3mmy_A           32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVC--WSDDGSK-VFTASCDK  108 (368)
T ss_dssp             EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEE--ECTTSSE-EEEEETTS
T ss_pred             eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEE--ECcCCCE-EEEEcCCC
Confidence            34667899999999999866  79999999999999999997 4444 67889999999997  7776665 99999999


Q ss_pred             eEEEEeCCCceEEEeeecccCcEEEEEE--ecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214          308 SVRLWDSESRCCVGVGTGHMGAVGAVAF--SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS  385 (768)
Q Consensus       308 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  385 (768)
                      .|++||+.+++... ...|...|.+++|  +|++. ++++++.||.|++||+....          .......+ ..+.+
T Consensus       109 ~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~-~~~~~  175 (368)
T 3mmy_A          109 TAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSN----------PMMVLQLP-ERCYC  175 (368)
T ss_dssp             EEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSS----------CSEEEECS-SCEEE
T ss_pred             cEEEEEcCCCCcee-eccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCc----------EEEEEecC-CCceE
Confidence            99999999998776 5669999999999  77754 79999999999999998542          22333333 35555


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe--ccCCCeEEEEEccCCCE----EEEeeCCCcEEEEeCCCC---ce
Q 004214          386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQV----VITASGDKTIKIWSISDG---SC  456 (768)
Q Consensus       386 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~v~~s~~~~~----l~t~~~d~~i~iwd~~~~---~~  456 (768)
                      +.+.  +..+++++.++.+.+|++..........  .+...+.++++.++...    +++++.||.|++||+...   ..
T Consensus       176 ~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~  253 (368)
T 3mmy_A          176 ADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKD  253 (368)
T ss_dssp             EEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHH
T ss_pred             EEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccc
Confidence            5555  4588899999999999998765443322  24456677777766554    999999999999999887   66


Q ss_pred             eEEeecCCC------------cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 004214          457 LKTFEGHTS------------SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG  524 (768)
Q Consensus       457 ~~~~~~~~~------------~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~  524 (768)
                      +..+.+|..            +|++++|+|++++|++++.||.|++||+.+++++..+..|..+|++++|+|++++|+++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  333 (368)
T 3mmy_A          254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYA  333 (368)
T ss_dssp             SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEE
T ss_pred             ceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEE
Confidence            788888876            79999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEEc
Q 004214          525 GSDALVNLWHD  535 (768)
Q Consensus       525 ~~dg~v~vw~~  535 (768)
                      +.|+..+.|++
T Consensus       334 s~d~~~~~~~~  344 (368)
T 3mmy_A          334 SSYDWSKGHEF  344 (368)
T ss_dssp             ECCCSTTCGGG
T ss_pred             ecccccccccc
Confidence            99986555543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=6.3e-30  Score=304.16  Aligned_cols=432  Identities=9%  Similarity=0.006  Sum_probs=320.5

Q ss_pred             CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCC------CeEEEEE
Q 004214           29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD------KVVNLWD  102 (768)
Q Consensus        29 h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~d------g~i~vWd  102 (768)
                      +.+.+.+.+|||  +.  |+.++. +.|.+|++.+++. ..+.+|...+.+++|||||++|++++.+      ..|.+||
T Consensus        13 ~~~~~~~~~~S~--~~--iaf~~~-~~l~~~~~~gg~~-~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d   86 (1045)
T 1k32_A           13 MPNLLLNPDIHG--DR--IIFVCC-DDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYN   86 (1045)
T ss_dssp             CCCCCEEEEEET--TE--EEEEET-TEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEE
T ss_pred             ccceEeCcEEeC--CE--EEEEEC-CcEEEEECCCCcE-EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEE
Confidence            567889999996  44  666654 6899999987764 5677899999999999999999988643      4799999


Q ss_pred             CCCCeeeeeeecceeE-------eeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCC------cEEEEEEcCC
Q 004214          103 LRDYSCKLTVPTYEMV-------EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER------GIVRMWNADS  169 (768)
Q Consensus       103 ~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~i~iwd~~~  169 (768)
                      +.+++......+...+       ..++|+|++.                       .+++++.+      ..|..|++.+
T Consensus        87 ~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~-----------------------ll~~~~~~~~~~~~~~l~~~~~~~  143 (1045)
T 1k32_A           87 GENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN-----------------------LIISTDAMQPFSSMTCLYRVENDG  143 (1045)
T ss_dssp             TTTTEEEECCCCCEEEETTEECSEEEEECTTCC-----------------------EEEEECTTSSSTTCCEEEEEEGGG
T ss_pred             CCCCCeEEcccCCCcccccccccccccCCCCCE-----------------------EEEEECCcCCCcccceEEEEECCC
Confidence            9998754433444456       7899999986                       34444432      4688888877


Q ss_pred             ceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEe------------cCeEEEEeeccCcccceeeEEEeeecc
Q 004214          170 ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA------------DQQLLLYTTVEVPEKKMELILSKRLVG  237 (768)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------dg~i~~~~~~~~~~~~~~~~~~~~~~~  237 (768)
                      +........             ......++| + .++.+..            +....+|......       ....+.+
T Consensus       144 g~~~~l~~~-------------~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~-------~~~~l~~  201 (1045)
T 1k32_A          144 INFVPLNLG-------------PATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG-------AFKKIVD  201 (1045)
T ss_dssp             TEEEECCSC-------------SCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETT-------EEEEEEC
T ss_pred             CCeEEecCC-------------CcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCC-------CeEECcC
Confidence            743221111             112344777 5 4444331            2334455433221       1123368


Q ss_pred             cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC-ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC
Q 004214          238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES  316 (768)
Q Consensus       238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~  316 (768)
                      |...+.++.|++.  .+++++..++.+.+|.+.. +.....+..|.. +.+..  +++++.. ++.+ .++.|++|+...
T Consensus       202 ~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~-~~~~~--~SpDG~~-la~~-~~~~i~~~d~~~  274 (1045)
T 1k32_A          202 MSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRH--LNTDGRR-ILFS-KGGSIYIFNPDT  274 (1045)
T ss_dssp             CSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCS-SCEEE--EEESSSC-EEEE-ETTEEEEECTTT
T ss_pred             CCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCC-cceee--EcCCCCE-EEEE-eCCEEEEecCCc
Confidence            8899999999854  6667777888889987653 334445555543 34444  6788876 6655 489999999955


Q ss_pred             ceEEEeeec-----------ccCcEEEEEEe-cCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCC-Ce
Q 004214          317 RCCVGVGTG-----------HMGAVGAVAFS-KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK-DI  383 (768)
Q Consensus       317 ~~~~~~~~~-----------~~~~v~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~i  383 (768)
                      .... .+..           |...+.+++|+ |+|+. +++++ ++.|.+|++....           ......|.. .+
T Consensus       275 ~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~-la~~~-~~~i~~~~~~~~~-----------~~~~~~~~~~~~  340 (1045)
T 1k32_A          275 EKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDL-IAFVS-RGQAFIQDVSGTY-----------VLKVPEPLRIRY  340 (1045)
T ss_dssp             CCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGC-EEEEE-TTEEEEECTTSSB-----------EEECSCCSCEEE
T ss_pred             eEee-eeccCcccccccccccccccceeeecCCCCCE-EEEEE-cCEEEEEcCCCCc-----------eEEccCCCcceE
Confidence            5443 4444           34578999999 99874 55555 8899999986431           122344555 78


Q ss_pred             EEEEEccCCCEEEEEeCCCcEE-EEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec
Q 004214          384 NSLAVAPNDSLVCTGSQDRTAC-VWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG  462 (768)
Q Consensus       384 ~~~~~s~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~  462 (768)
                      .+++|+ +|+.+++++.++.+. +|++.+++... +.+|...+.+++|+|+|++|++++.++.|++||+.+++....+.+
T Consensus       341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~  418 (1045)
T 1k32_A          341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS  418 (1045)
T ss_dssp             EEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC
Confidence            999999 999999999888888 99998776544 447888999999999999999999999999999999998888888


Q ss_pred             CCCcEEEEEEEeCCCEEEEEeCCC----------cEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 004214          463 HTSSVLRASFLTRGAQIVSCGADG----------LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL  532 (768)
Q Consensus       463 ~~~~v~~~~~s~~~~~l~s~~~dg----------~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~v  532 (768)
                      |...+..++|+|||++|++++.++          .|++||+.+++ +..+..|...+.+++|+|||++|+.++.++...+
T Consensus       419 ~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~  497 (1045)
T 1k32_A          419 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPS  497 (1045)
T ss_dssp             SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCE
T ss_pred             CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcC
Confidence            999999999999999998887654          89999999988 6677778889999999999999999998887777


Q ss_pred             EEc
Q 004214          533 WHD  535 (768)
Q Consensus       533 w~~  535 (768)
                      |+.
T Consensus       498 ~~~  500 (1045)
T 1k32_A          498 PDR  500 (1045)
T ss_dssp             ECS
T ss_pred             cch
Confidence            764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2.8e-31  Score=275.79  Aligned_cols=305  Identities=13%  Similarity=0.153  Sum_probs=196.4

Q ss_pred             EEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEE-EE
Q 004214           14 VWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLI-SA   92 (768)
Q Consensus        14 vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~-s~   92 (768)
                      ||++.+...++.+.+|.+.|++++|+|||+.  |++|+.++ ++|||+.+++.+.....+  .+..+++.+++++++ ++
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~--la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   77 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSC--LILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVT   77 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSE--EEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEEC
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCE--EEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEE
Confidence            5677777778888999999999999999987  89888776 789999988877655433  488889999888884 56


Q ss_pred             eCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCcee
Q 004214           93 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL  172 (768)
Q Consensus        93 ~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~  172 (768)
                      +.|+.|++||+.+++++..+....                                                        
T Consensus        78 ~~d~~v~iWd~~~~~~~~~~~~~~--------------------------------------------------------  101 (355)
T 3vu4_A           78 GVKEVVHIWDDVKKQDVSRIKVDA--------------------------------------------------------  101 (355)
T ss_dssp             SSTTEEEEEETTTTEEEEEEECSS--------------------------------------------------------
T ss_pred             CCccEEEEEECCCCcEEEEEECCC--------------------------------------------------------
Confidence            778999999998887655443322                                                        


Q ss_pred             eeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCC
Q 004214          173 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE  252 (768)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  252 (768)
                                                                                          .|.++.+.+   
T Consensus       102 --------------------------------------------------------------------~v~~v~~~~---  110 (355)
T 3vu4_A          102 --------------------------------------------------------------------PVKDLFLSR---  110 (355)
T ss_dssp             --------------------------------------------------------------------CEEEEEECS---
T ss_pred             --------------------------------------------------------------------ceEEEEEcC---
Confidence                                                                                223333321   


Q ss_pred             CEEEEEeCCCcEEEEECCCc-eeeeeeeCCccceEEEeeeeecCCCEEEEE-EeCCCeEEEEeCCCceEEEeeecccCcE
Q 004214          253 QYLAVATNIEQVQVYDLSSM-SCSYVLAGHSEIVLCLDTCALSSGKILIVT-GSKDNSVRLWDSESRCCVGVGTGHMGAV  330 (768)
Q Consensus       253 ~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v  330 (768)
                      ..++++. ++.|++||+.++ +.+..+.. ...+.+    +.+  ..++++ |+.||.|++||+.++.......      
T Consensus       111 ~~~~~~~-~~~i~i~d~~~~~~~~~~~~~-~~~~~~----~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~------  176 (355)
T 3vu4_A          111 EFIVVSY-GDVISVFKFGNPWKRITDDIR-FGGVCE----FSN--GLLVYSNEFNLGQIHITKLQSSGSATTQD------  176 (355)
T ss_dssp             SEEEEEE-TTEEEEEESSTTCCBSSCCEE-EEEEEE----EET--TEEEEEESSCTTCEEEEECCC--------------
T ss_pred             CEEEEEE-cCEEEEEECCCCceeeEEecc-CCceEE----EEc--cEEEEeCCCcCcEEEEEECCCCCcccccc------
Confidence            1222222 355666665554 33333332 111111    111  221222 4556666666655543211000      


Q ss_pred             EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccce-eeEeeccCCCeEEEEEccCCCEEEEEeCCCc-EEEEe
Q 004214          331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKA-KAVVAAHGKDINSLAVAPNDSLVCTGSQDRT-ACVWR  408 (768)
Q Consensus       331 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~d  408 (768)
                               .. .                      ......+ ...+.+|...|++++|+|+|++|++|+.||+ |++||
T Consensus       177 ---------~~-~----------------------~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd  224 (355)
T 3vu4_A          177 ---------QG-V----------------------QQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFK  224 (355)
T ss_dssp             ------------------------------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEE
T ss_pred             ---------cc-c----------------------cccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence                     00 0                      0001112 4566789999999999999999999999998 99999


Q ss_pred             CCCCceEEEEe-c-cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce--eEEee---------------------cC
Q 004214          409 LPDLVSVVTFR-G-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC--LKTFE---------------------GH  463 (768)
Q Consensus       409 ~~~~~~~~~~~-~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~--~~~~~---------------------~~  463 (768)
                      +.+++.+..+. + |...|++++|+|++++|++++.|++|++||+..+..  ...+.                     .+
T Consensus       225 ~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (355)
T 3vu4_A          225 TEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDK  304 (355)
T ss_dssp             TTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCT
T ss_pred             CCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCC
Confidence            99999999998 5 999999999999999999999999999999976532  11111                     11


Q ss_pred             CCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC
Q 004214          464 TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG  496 (768)
Q Consensus       464 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  496 (768)
                      ......++|+++|++|++++.||.+++|++..+
T Consensus       305 ~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          305 HVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence            223366899999999999999999999987653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.4e-29  Score=271.83  Aligned_cols=278  Identities=9%  Similarity=0.049  Sum_probs=235.1

Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeee-----eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214          241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY-----VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE  315 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-----~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~  315 (768)
                      .+.+++|++ ++.++++++.++.|++||+.+++...     .+.+|...+.++.  + ++++.++++++.|+.|++||+.
T Consensus       124 ~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~--~-~~~~~~~~s~~~d~~v~~~d~~  199 (433)
T 3bws_A          124 QPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETIS--I-PEHNELWVSQMQANAVHVFDLK  199 (433)
T ss_dssp             CBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEE--E-GGGTEEEEEEGGGTEEEEEETT
T ss_pred             CceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEE--E-cCCCEEEEEECCCCEEEEEECC
Confidence            456788887 77788888888999999999998876     4457888999986  5 4445569999999999999999


Q ss_pred             CceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE
Q 004214          316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV  395 (768)
Q Consensus       316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  395 (768)
                      +++.+..+..|...+.+++|+|++..++++++.|+.|++||+..+.          ...... +...+.+++|+|+++.+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~----------~~~~~~-~~~~~~~~~~~~~g~~l  268 (433)
T 3bws_A          200 TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL----------EIRKTD-KIGLPRGLLLSKDGKEL  268 (433)
T ss_dssp             TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE----------EEEECC-CCSEEEEEEECTTSSEE
T ss_pred             CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc----------EEEEec-CCCCceEEEEcCCCCEE
Confidence            9999999999999999999999988655677789999999997431          222222 34558999999999999


Q ss_pred             EEEe--------CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCE-EEEeeCCCcEEEEeCCCCceeEEeecCCCc
Q 004214          396 CTGS--------QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV-VITASGDKTIKIWSISDGSCLKTFEGHTSS  466 (768)
Q Consensus       396 ~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~  466 (768)
                      ++++        .||.|++||+.+++....+ .|...+.+++|+|+++. +++++.|+.|++||+.+++.+..+. +...
T Consensus       269 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~  346 (433)
T 3bws_A          269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDK  346 (433)
T ss_dssp             EEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSS
T ss_pred             EEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCC
Confidence            9988        5889999999998877765 46668999999999975 5666899999999999999888887 7788


Q ss_pred             EEEEEEEeCCCEEEEEeC---------------CCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-CCcE
Q 004214          467 VLRASFLTRGAQIVSCGA---------------DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS-DALV  530 (768)
Q Consensus       467 v~~~~~s~~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~-dg~v  530 (768)
                      +.+++|+|+|++|++++.               ||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++. |+.|
T Consensus       347 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i  425 (433)
T 3bws_A          347 PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQI  425 (433)
T ss_dssp             EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEE
T ss_pred             CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeE
Confidence            999999999999988876               57999999999999998875 567899999999999998875 9999


Q ss_pred             EEEEcC
Q 004214          531 NLWHDS  536 (768)
Q Consensus       531 ~vw~~~  536 (768)
                      ++|++.
T Consensus       426 ~v~~~~  431 (433)
T 3bws_A          426 RVYRRD  431 (433)
T ss_dssp             EEEEET
T ss_pred             EEEEec
Confidence            999976

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=3.7e-30  Score=252.82  Aligned_cols=159  Identities=11%  Similarity=0.169  Sum_probs=133.8

Q ss_pred             EeeccCCCeEEEEEcc---CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCC---CeEEEEEccCCCEE-----------
Q 004214          375 VVAAHGKDINSLAVAP---NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR---GIWSVEFSPVDQVV-----------  437 (768)
Q Consensus       375 ~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~v~~v~~s~~~~~l-----------  437 (768)
                      ....|...++.++|+|   ++.+|++|+.|++|+|||+.+++.+.++.+|..   .+.+++|+|+|.++           
T Consensus       173 s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~  252 (356)
T 2w18_A          173 NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKES  252 (356)
T ss_dssp             EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-------
T ss_pred             eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcce
Confidence            4456788888999999   789999999999999999999999999987543   67788999999876           


Q ss_pred             -EEeeCCCcEEEEeCCCCceeEEe-----ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEE-
Q 004214          438 -ITASGDKTIKIWSISDGSCLKTF-----EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIW-  510 (768)
Q Consensus       438 -~t~~~d~~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-  510 (768)
                       ++|+.|++|++||..+++++..+     .+|...+.+..+  ++.++++++.||+|+|||+.+++++.++.+|...+. 
T Consensus       253 laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs  330 (356)
T 2w18_A          253 ESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWS  330 (356)
T ss_dssp             -----CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCC
T ss_pred             eeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEE
Confidence             56788999999999999988776     377766554444  488999999999999999999999999999988765 


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214          511 ALAVGKKTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       511 ~l~~s~~~~~l~s~~~dg~v~vw~~  535 (768)
                      +++|+|||++|++|+.|++|+||+.
T Consensus       331 ~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          331 FVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEECCCCCEEEEEECCCcEEEecC
Confidence            5899999999999999999999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-30  Score=279.84  Aligned_cols=285  Identities=12%  Similarity=0.119  Sum_probs=234.0

Q ss_pred             CceeEEEEecCCCCEEEEEeCCCcEEEEECCCce---eeeeeeC------------------------------------
Q 004214          240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS---CSYVLAG------------------------------------  280 (768)
Q Consensus       240 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---~~~~~~~------------------------------------  280 (768)
                      .++.+++|++ ++++++++ .++.|++||+.+++   .+..+..                                    
T Consensus         5 ~p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            5 HPLQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             CCCCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             ccEEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            4678888876 44555555 56899999999888   5555443                                    


Q ss_pred             ------------------CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC--CceEEEeee--cccCcEEEEEEecC
Q 004214          281 ------------------HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE--SRCCVGVGT--GHMGAVGAVAFSKK  338 (768)
Q Consensus       281 ------------------~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~  338 (768)
                                        |...|.+++  +.+++..++++|+.||.|++||+.  ++..+..+.  .|...|.+++|+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  160 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLR--LTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED  160 (450)
T ss_dssp             -----------------CCCCCEEEEE--ECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred             cccccCccccCCCCCCCccCCceEEEE--EcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence                              333688887  778888756999999999999999  888887776  56789999999999


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC---CCEEEEEeCCCcEEEEeCCCCceE
Q 004214          339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN---DSLVCTGSQDRTACVWRLPDLVSV  415 (768)
Q Consensus       339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~i~d~~~~~~~  415 (768)
                      +. +|++++.+|.|++|++.......      .....+.+|...|++++|+|+   +++|++|+.|+.|++||+.+++.+
T Consensus       161 ~~-~l~~~~~~g~v~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~  233 (450)
T 2vdu_B          161 DT-TVIIADKFGDVYSIDINSIPEEK------FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV  233 (450)
T ss_dssp             SS-EEEEEETTSEEEEEETTSCCCSS------CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE
T ss_pred             CC-EEEEEeCCCcEEEEecCCccccc------ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee
Confidence            76 89999999999999987553211      022245678999999999999   999999999999999999999888


Q ss_pred             EE-EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec-------------------------CCCcEEE
Q 004214          416 VT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG-------------------------HTSSVLR  469 (768)
Q Consensus       416 ~~-~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-------------------------~~~~v~~  469 (768)
                      .. +.+|...|++++|+ ++++|++++.|+.|++||+.+++++..+..                         +...|.+
T Consensus       234 ~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (450)
T 2vdu_B          234 DKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK  312 (450)
T ss_dssp             EEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred             eeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence            77 55899999999999 999999999999999999999999988863                         2357899


Q ss_pred             EEEEeCCCEEEEEe-CCCcEEEEEC--CCC---eEEEEeccCCCcEEEEEEcCCCCEEEEEeC------CCcEEEEEcCC
Q 004214          470 ASFLTRGAQIVSCG-ADGLVKLWTV--RTG---ECIATYDKHEDKIWALAVGKKTEMFATGGS------DALVNLWHDST  537 (768)
Q Consensus       470 ~~~s~~~~~l~s~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~------dg~v~vw~~~~  537 (768)
                      ++|+|++++|++++ .|+.|++|++  .++   +.+..+..| +.|++++|+|++.++++++.      +..|.+|.+..
T Consensus       313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence            99999999999999 8999999999  666   778888877 88999999996544443332      55688887654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5e-31  Score=279.84  Aligned_cols=294  Identities=16%  Similarity=0.224  Sum_probs=236.0

Q ss_pred             cEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe----eEEEecCccceeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 004214           32 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK----CVATLDKHFSRVTSMAITS-DGSTLISAGRDKVVNLWDLRDY  106 (768)
Q Consensus        32 ~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~----~~~~l~~h~~~V~~l~fs~-d~~~L~s~~~dg~i~vWd~~~~  106 (768)
                      ....++++|+.. .++++|+.||.|+|||+.+..    .+..+.+|.+.|++++|+| ++++|++++.||.|++||+.++
T Consensus        36 ~~~~~~~~~~~~-~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~  114 (402)
T 2aq5_A           36 DSGFCAVNPKFM-ALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG  114 (402)
T ss_dssp             SSCSEEECSSEE-EEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred             CCCcEEECCCeE-EEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence            344688888643 345568999999999996542    3556789999999999999 9999999999999999999875


Q ss_pred             eeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccc
Q 004214          107 SCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEM  186 (768)
Q Consensus       107 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~  186 (768)
                      .......                                                                         
T Consensus       115 ~~~~~~~-------------------------------------------------------------------------  121 (402)
T 2aq5_A          115 GLVLPLR-------------------------------------------------------------------------  121 (402)
T ss_dssp             CCSSCBC-------------------------------------------------------------------------
T ss_pred             CCccccC-------------------------------------------------------------------------
Confidence            3211000                                                                         


Q ss_pred             cCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004214          187 DDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQV  266 (768)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i  266 (768)
                                                                 .....+.+|...|.+++|++.+..++++++.|+.|++
T Consensus       122 -------------------------------------------~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~i  158 (402)
T 2aq5_A          122 -------------------------------------------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILV  158 (402)
T ss_dssp             -------------------------------------------SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEE
T ss_pred             -------------------------------------------CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEE
Confidence                                                       0112344677889999999876789999999999999


Q ss_pred             EECCCceeeeee--eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee-ecccCc-EEEEEEecCCCcE
Q 004214          267 YDLSSMSCSYVL--AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG-TGHMGA-VGAVAFSKKLQNF  342 (768)
Q Consensus       267 ~d~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~  342 (768)
                      ||+.+++....+  .+|...|.+++  +.+++.. |++++.||.|++||+.+++.+..+ .+|.+. +.+++|+|++. +
T Consensus       159 wd~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  234 (402)
T 2aq5_A          159 WDVGTGAAVLTLGPDVHPDTIYSVD--WSRDGAL-ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK-I  234 (402)
T ss_dssp             EETTTTEEEEEECTTTCCSCEEEEE--ECTTSSC-EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE-E
T ss_pred             EECCCCCccEEEecCCCCCceEEEE--ECCCCCE-EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc-E
Confidence            999999999998  88999999998  6676665 999999999999999999999888 788776 89999999965 7


Q ss_pred             EEEE---eCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEE-EeCCCcEEEEeCCCCce-EEE
Q 004214          343 LVSG---SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT-GSQDRTACVWRLPDLVS-VVT  417 (768)
Q Consensus       343 l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~-~~~  417 (768)
                      +++|   +.|+.|++||+.....        ........|...+.+++|+|+++++++ |+.||.|++||+.+++. +..
T Consensus       235 l~~g~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~  306 (402)
T 2aq5_A          235 LTTGFSRMSERQVALWDTKHLEE--------PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHY  306 (402)
T ss_dssp             EEEEECTTCCEEEEEEETTBCSS--------CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEE
T ss_pred             EEEeccCCCCceEEEEcCccccC--------CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEe
Confidence            8888   7999999999985421        112222356788999999999999875 55799999999998874 555


Q ss_pred             Eec--cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce
Q 004214          418 FRG--HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC  456 (768)
Q Consensus       418 ~~~--~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~  456 (768)
                      +..  |..+|.+++|+|++.++++  .++.+++|++.++.+
T Consensus       307 l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          307 LSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             EEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             ecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence            544  4589999999999988764  457999999977653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.5e-30  Score=253.99  Aligned_cols=278  Identities=13%  Similarity=0.093  Sum_probs=200.9

Q ss_pred             ecCCCcEEEEECCCC---EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEE
Q 004214            6 EGADRKVLVWDVDGG---FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAI   82 (768)
Q Consensus         6 g~~dg~i~vwd~~~~---~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~f   82 (768)
                      ......|++|++.++   ++++++.+|+.+|..++|.||... ++..+                  --.-|...|.+++|
T Consensus        59 ~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~------------------~~~~~~~~v~sla~  119 (356)
T 2w18_A           59 TACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN-LVCVA------------------LGNLEIREIRALFC  119 (356)
T ss_dssp             EEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS-CEEEE------------------ECSSSEEEEEEECC
T ss_pred             EeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc-eeeee------------------eccccccceEEEEE
Confidence            345789999999998   899999999999999999998654 22221                  11226677999999


Q ss_pred             cCC----CCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeC
Q 004214           83 TSD----GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE  158 (768)
Q Consensus        83 s~d----~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (768)
                      +||    ++++++++.  .+.+|++.+++.+                                                 
T Consensus       120 spd~~~~~~~l~s~g~--~~~v~~l~~g~lv-------------------------------------------------  148 (356)
T 2w18_A          120 SSDDESEKQVLLKSGN--IKAVLGLTKRRLV-------------------------------------------------  148 (356)
T ss_dssp             ------CCEEEEEEEE--EEEEEEETTTEEE-------------------------------------------------
T ss_pred             CCCccccccEEEeCCC--eEEEEecCCCcEE-------------------------------------------------
Confidence            999    899999884  3777876443311                                                 


Q ss_pred             CcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeeccc
Q 004214          159 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY  238 (768)
Q Consensus       159 ~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~  238 (768)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (356)
T 2w18_A          149 --------------------------------------------------------------------------------  148 (356)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCceeEEEEecCCCCEEEEEe--CCCcEEEEEC-CCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214          239 NEEILDLKFLGEEEQYLAVAT--NIEQVQVYDL-SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE  315 (768)
Q Consensus       239 ~~~i~~~~~~~~~~~~l~~~~--~~~~i~i~d~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~  315 (768)
                                       .++.  .++.|++|++ .+++.+..+.+|...+..+++.+.+.++.+|++|+.|++|++||+.
T Consensus       149 -----------------~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~  211 (356)
T 2w18_A          149 -----------------SSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK  211 (356)
T ss_dssp             -----------------EEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT
T ss_pred             -----------------EecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC
Confidence                             1111  2455666665 3355556667777777777744434455569999999999999999


Q ss_pred             CceEEEeeeccc---CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214          316 SRCCVGVGTGHM---GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND  392 (768)
Q Consensus       316 ~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  392 (768)
                      +++++..+.+|.   ..+.+++|+|++. ++++++.+..  +|                                     
T Consensus       212 TGk~l~tL~g~~~~v~~v~~vafSpdG~-~lvs~s~~~~--~w-------------------------------------  251 (356)
T 2w18_A          212 TGQLLKKMHIDDSYQASVCHKAYSEMGL-LFIVLSHPCA--KE-------------------------------------  251 (356)
T ss_dssp             TCCEEEEEECCC---CCCEEEEEEETTE-EEEEEC---------------------------------------------
T ss_pred             CCcEEEEEcCCCcceeeeEEEEECCCCC-EEEEeccCCC--cc-------------------------------------
Confidence            999999998654   3577788999865 5666554321  12                                     


Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEE-----eccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcE
Q 004214          393 SLVCTGSQDRTACVWRLPDLVSVVTF-----RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV  467 (768)
Q Consensus       393 ~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v  467 (768)
                       .+++|+.|++|++||..+++.+..+     .+|...+.+..++  +.++++++.|++|+|||+.+++++.++.+|...+
T Consensus       252 -~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~v  328 (356)
T 2w18_A          252 -SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQH  328 (356)
T ss_dssp             -------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CC
T ss_pred             -eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCe
Confidence             4678889999999999999887765     3666665555444  8899999999999999999999999999998766


Q ss_pred             E-EEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214          468 L-RASFLTRGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       468 ~-~~~~s~~~~~l~s~~~dg~i~iwd~  493 (768)
                      . .++|+|||++|++|+.|++|+|||+
T Consensus       329 vs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          329 WSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEecC
Confidence            5 5899999999999999999999985

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.98  E-value=7.1e-29  Score=266.39  Aligned_cols=330  Identities=9%  Similarity=0.081  Sum_probs=258.0

Q ss_pred             CCCcEEEEE---EeeCCCccEEEE------------EeCCC--cEEEEECCCC--eeEEEecCccceeEEEEEcCCCCEE
Q 004214           29 HKGVVSSIL---FHPDTDKSLLFS------------GSDDA--TVRVWDLLAK--KCVATLDKHFSRVTSMAITSDGSTL   89 (768)
Q Consensus        29 h~~~V~~l~---~spd~~~~~l~s------------g~~dg--~I~iWd~~~~--~~~~~l~~h~~~V~~l~fs~d~~~L   89 (768)
                      +...+..++   |+|++...++++            ++.++  .|.+||..++  +.+..+..+. .+.+++|+|++.++
T Consensus        59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~  137 (433)
T 3bws_A           59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLA  137 (433)
T ss_dssp             TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEE
T ss_pred             cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEE
Confidence            456778888   888766533333            23334  4444444435  6666676554 46699999977778


Q ss_pred             EEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCC
Q 004214           90 ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS  169 (768)
Q Consensus        90 ~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~  169 (768)
                      ++++.++.|++||+.+++....++.                                                       
T Consensus       138 ~~~~~~~~i~~~d~~~g~~~~~~~~-------------------------------------------------------  162 (433)
T 3bws_A          138 IPLLEDEGMDVLDINSGQTVRLSPP-------------------------------------------------------  162 (433)
T ss_dssp             EEBTTSSSEEEEETTTCCEEEECCC-------------------------------------------------------
T ss_pred             EEeCCCCeEEEEECCCCeEeeecCc-------------------------------------------------------
Confidence            8888889999999988764432210                                                       


Q ss_pred             ceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEec
Q 004214          170 ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG  249 (768)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  249 (768)
                                                                                     ....+|...+.+++| +
T Consensus       163 ---------------------------------------------------------------~~~~~~~~~v~~~~~-~  178 (433)
T 3bws_A          163 ---------------------------------------------------------------EKYKKKLGFVETISI-P  178 (433)
T ss_dssp             ---------------------------------------------------------------HHHHTTCCEEEEEEE-G
T ss_pred             ---------------------------------------------------------------ccccccCCceeEEEE-c
Confidence                                                                           012245556778888 4


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCc
Q 004214          250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA  329 (768)
Q Consensus       250 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  329 (768)
                      +++.++++++.++.|++||+.+++....+..|...+.+++  +.+++..++++++.++.|++||+.+++.+..+..+ ..
T Consensus       179 ~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~  255 (433)
T 3bws_A          179 EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILL--YDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GL  255 (433)
T ss_dssp             GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEE--EETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SE
T ss_pred             CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEE--EcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CC
Confidence            5778899999999999999999999999999999999998  78888886677778999999999999988877754 45


Q ss_pred             EEEEEEecCCCcEEEEEe--------CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE-EEEEeC
Q 004214          330 VGAVAFSKKLQNFLVSGS--------SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL-VCTGSQ  400 (768)
Q Consensus       330 v~~~~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~  400 (768)
                      +.+++|+|+++ ++++++        .||.|++||+..+.          . .....|...+.+++|+|+++. +++++.
T Consensus       256 ~~~~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~----------~-~~~~~~~~~~~~~~~~~~g~~l~~~~~~  323 (433)
T 3bws_A          256 PRGLLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKEK----------L-IDTIGPPGNKRHIVSGNTENKIYVSDMC  323 (433)
T ss_dssp             EEEEEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTTE----------E-EEEEEEEECEEEEEECSSTTEEEEEETT
T ss_pred             ceEEEEcCCCC-EEEEEECCCCccccCCCeEEEEECCCCc----------E-EeeccCCCCcceEEECCCCCEEEEEecC
Confidence            89999999977 566666        58899999997431          1 122345568899999999975 466689


Q ss_pred             CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC---------------CCcEEEEeCCCCceeEEeecCCC
Q 004214          401 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG---------------DKTIKIWSISDGSCLKTFEGHTS  465 (768)
Q Consensus       401 dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~---------------d~~i~iwd~~~~~~~~~~~~~~~  465 (768)
                      |+.|++||+.+++....+. +...+.+++|+|+++++++++.               ||.|++||+.+++.+..+.. ..
T Consensus       324 ~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~  401 (433)
T 3bws_A          324 CSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GN  401 (433)
T ss_dssp             TTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SS
T ss_pred             CCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CC
Confidence            9999999999998888776 7788999999999999888876               57999999999999998886 45


Q ss_pred             cEEEEEEEeCCCEEEEEeC-CCcEEEEECCC
Q 004214          466 SVLRASFLTRGAQIVSCGA-DGLVKLWTVRT  495 (768)
Q Consensus       466 ~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~  495 (768)
                      .+.+++|+|+|++|++++. |+.|++|++..
T Consensus       402 ~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          402 QPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             SEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             CCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            7899999999999998875 99999999863

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6e-31  Score=301.04  Aligned_cols=251  Identities=24%  Similarity=0.380  Sum_probs=217.3

Q ss_pred             eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC--CceEEEeeecccCcEEEEEEecCC-CcEEEEEeCCCeE
Q 004214          276 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE--SRCCVGVGTGHMGAVGAVAFSKKL-QNFLVSGSSDHTI  352 (768)
Q Consensus       276 ~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i  352 (768)
                      ..+.+|.+.|.+++  +.+++.. +++|+.||.|++||+.  ++.....+.+|.++|.+++|+|+. ..++++|+.||.|
T Consensus         3 ~~l~gH~~~V~~l~--~s~dg~~-latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I   79 (753)
T 3jro_A            3 VIANAHNELIHDAV--LDYYGKR-LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (753)
T ss_dssp             -----CCCCEEEEC--CCSSSCC-EEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred             eecccCcceeEEEE--ECCCCCe-EEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence            46789999999998  7777765 9999999999999998  567788889999999999999872 3489999999999


Q ss_pred             EEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCC--ceEEEEeccCCCeEEE
Q 004214          353 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKRGIWSV  428 (768)
Q Consensus       353 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~v  428 (768)
                      ++||+..+        ..........|...|++++|+|+  ++++++|+.||.|++||+.++  .....+.+|...|.++
T Consensus        80 ~vwd~~~~--------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l  151 (753)
T 3jro_A           80 LIWKEENG--------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA  151 (753)
T ss_dssp             EEEEEETT--------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEE
T ss_pred             EEEECCCC--------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEE
Confidence            99998753        22355666789999999999999  999999999999999999877  3455678899999999


Q ss_pred             EEcc-------------CCCEEEEeeCCCcEEEEeCCCC----ceeEEeecCCCcEEEEEEEeC---CCEEEEEeCCCcE
Q 004214          429 EFSP-------------VDQVVITASGDKTIKIWSISDG----SCLKTFEGHTSSVLRASFLTR---GAQIVSCGADGLV  488 (768)
Q Consensus       429 ~~s~-------------~~~~l~t~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~dg~i  488 (768)
                      +|+|             ++.++++|+.||.|++||++++    .+...+.+|...|++++|+|+   +++|++|+.||.|
T Consensus       152 ~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I  231 (753)
T 3jro_A          152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC  231 (753)
T ss_dssp             EECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCE
T ss_pred             EecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEE
Confidence            9999             5899999999999999999887    566788899999999999999   8999999999999


Q ss_pred             EEEECCCCe-----EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          489 KLWTVRTGE-----CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       489 ~iwd~~~~~-----~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      ++||+.+++     .+.....|...|++++|+|+|++|++|+.||.|++|++.+
T Consensus       232 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             EEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            999999874     3344456889999999999999999999999999999874

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-30  Score=269.37  Aligned_cols=210  Identities=10%  Similarity=0.087  Sum_probs=159.0

Q ss_pred             EEECCCceeeeee-eCCccceEEEeeeeec--CCCEEEEEEeCCCeEEEEeCCCceEEEeee-cccCcEEEEEEecCCCc
Q 004214          266 VYDLSSMSCSYVL-AGHSEIVLCLDTCALS--SGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQN  341 (768)
Q Consensus       266 i~d~~~~~~~~~~-~~~~~~v~~l~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~  341 (768)
                      +|+..+++.+..+ .+|...|.++.  +.+  ++.. +++|+.||.|++||+.+++...... .|...+.+++|+|++. 
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~-l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-  183 (343)
T 3lrv_A          108 ILDSKTNKVLREIEVDSANEIIYMY--GHNEVNTEY-FIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-  183 (343)
T ss_dssp             EEETTTCCEEEEEECCCSSCEEEEE--CCC---CCE-EEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-
T ss_pred             EeecCCcceeEEeecCCCCCEEEEE--cCCCCCCCE-EEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-
Confidence            3444444433333 25667788886  556  5555 9999999999999999998877664 4556899999999976 


Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec-cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec
Q 004214          342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG  420 (768)
Q Consensus       342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  420 (768)
                      ++++|+.||.|++||++....         ....+.. |...|++++|+|++.+|++++ |+.|++||+++++.+..+..
T Consensus       184 ~lasg~~dg~i~iwd~~~~~~---------~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~  253 (343)
T 3lrv_A          184 LLALYSPDGILDVYNLSSPDQ---------ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT  253 (343)
T ss_dssp             EEEEECTTSCEEEEESSCTTS---------CCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC
T ss_pred             EEEEEcCCCEEEEEECCCCCC---------CccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc
Confidence            899999999999999986431         1133444 899999999999999999999 55999999998876654443


Q ss_pred             ---cCCCeE--EEEEccCCCEEEEeeC-CCcEEEEeCCCCceeEEeecCCCcEEEEEEEe---CCCEEEEEeCCCcEEEE
Q 004214          421 ---HKRGIW--SVEFSPVDQVVITASG-DKTIKIWSISDGSCLKTFEGHTSSVLRASFLT---RGAQIVSCGADGLVKLW  491 (768)
Q Consensus       421 ---~~~~v~--~v~~s~~~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~dg~i~iw  491 (768)
                         |...+.  +++|+|++++|++++. |+.|++|++.........    .++..+.|.+   +++.+++++.||.+.++
T Consensus       254 ~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          254 YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred             cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence               444444  6999999999999988 999999999766544333    5677888988   88999999999999887


Q ss_pred             EC
Q 004214          492 TV  493 (768)
Q Consensus       492 d~  493 (768)
                      -.
T Consensus       330 ~~  331 (343)
T 3lrv_A          330 LK  331 (343)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-29  Score=272.63  Aligned_cols=197  Identities=16%  Similarity=0.113  Sum_probs=158.8

Q ss_pred             CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE----eeecccCcEEEEEEecC---CCcEEEEEeCCCeEE
Q 004214          281 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG----VGTGHMGAVGAVAFSKK---LQNFLVSGSSDHTIK  353 (768)
Q Consensus       281 ~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~~l~s~~~dg~i~  353 (768)
                      |...|.+++  +.+++.. |++|+.+|.|++|++.++....    .+.+|...|.+++|+|+   +. +|++++.|+.|+
T Consensus       148 ~~~~v~~~~--~sp~~~~-l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~  223 (450)
T 2vdu_B          148 FSKRPNAIS--IAEDDTT-VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIK  223 (450)
T ss_dssp             CSSCEEEEE--ECTTSSE-EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEE
T ss_pred             CCCCceEEE--EcCCCCE-EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEE
Confidence            445666765  6666655 8888889999999887766443    67789999999999998   54 899999999999


Q ss_pred             EEeCCCCCCCCccccccceee-EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEecc-----------
Q 004214          354 VWSFDGLSDDAEQPMNLKAKA-VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH-----------  421 (768)
Q Consensus       354 iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------  421 (768)
                      +||+....          ... ...+|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+           
T Consensus       224 vwd~~~~~----------~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  292 (450)
T 2vdu_B          224 ISHYPQCF----------IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQH  292 (450)
T ss_dssp             EEEESCTT----------CEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTS
T ss_pred             EEECCCCc----------eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcc
Confidence            99987432          222 245799999999999 9999999999999999999999988888632           


Q ss_pred             --------------CCCeEEEEEccCCCEEEEee-CCCcEEEEeC--CCC---ceeEEeecCCCcEEEEEEEeCCCEEEE
Q 004214          422 --------------KRGIWSVEFSPVDQVVITAS-GDKTIKIWSI--SDG---SCLKTFEGHTSSVLRASFLTRGAQIVS  481 (768)
Q Consensus       422 --------------~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~--~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s  481 (768)
                                    ...|.+++|+|++++|++++ .|+.|++|++  .++   .++..+.+| ..|.+++|+|++.++++
T Consensus       293 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~  371 (450)
T 2vdu_B          293 LAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTL  371 (450)
T ss_dssp             BC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEE
T ss_pred             cccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEE
Confidence                          35789999999999999999 8999999999  666   677888888 89999999996533443


Q ss_pred             EeC------CCcEEEEEC
Q 004214          482 CGA------DGLVKLWTV  493 (768)
Q Consensus       482 ~~~------dg~i~iwd~  493 (768)
                      ++.      +..|.+|.+
T Consensus       372 ~~~~~~~~~~~~i~v~~~  389 (450)
T 2vdu_B          372 DNKESSGVQKNFAKFIEY  389 (450)
T ss_dssp             CCTTCCSSCCCSEEEEEE
T ss_pred             ecccCCCCCCcceEEEEE
Confidence            333      344666654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=8.6e-30  Score=272.42  Aligned_cols=255  Identities=22%  Similarity=0.412  Sum_probs=221.7

Q ss_pred             eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC----------ceeeeeeeCCccceEEEeeeeecCCCEEEEE
Q 004214          233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS----------MSCSYVLAGHSEIVLCLDTCALSSGKILIVT  302 (768)
Q Consensus       233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~----------~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~  302 (768)
                      ....+|.+.|.+++|++.++.++++++.+|.|++|++.+          ......+.+|...+.+++  +.+.+..+|++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~~~~~~~~l~s  199 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLS--WNPNLNGYLLS  199 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEE--ECTTSTTEEEE
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEE--eCCCCCCeEEE
Confidence            345678899999999987788999999999999999986          567778899999999998  77777745999


Q ss_pred             EeCCCeEEEEeCCCceE-------EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE
Q 004214          303 GSKDNSVRLWDSESRCC-------VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV  375 (768)
Q Consensus       303 ~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  375 (768)
                      |+.||.|++|++.++..       ...+.+|...|.+++|+|++..++++++.||.|++||++...       .......
T Consensus       200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~-------~~~~~~~  272 (430)
T 2xyi_A          200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN-------TSKPSHT  272 (430)
T ss_dssp             ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC-------SSSCSEE
T ss_pred             EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC-------CCcceeE
Confidence            99999999999987321       345678999999999999767799999999999999998542       1234445


Q ss_pred             eeccCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCC-CceEEEEeccCCCeEEEEEccCCC-EEEEeeCCCcEEEEeCC
Q 004214          376 VAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVDQ-VVITASGDKTIKIWSIS  452 (768)
Q Consensus       376 ~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~v~~s~~~~-~l~t~~~d~~i~iwd~~  452 (768)
                      ...|...|++++|+|++. ++++|+.||.|++||+++ ..++..+.+|...|++++|+|+++ +|++++.|+.|+|||+.
T Consensus       273 ~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~  352 (430)
T 2xyi_A          273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS  352 (430)
T ss_dssp             EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred             eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence            568999999999999887 689999999999999998 567888999999999999999984 79999999999999997


Q ss_pred             C--------------CceeEEeecCCCcEEEEEEEeCCC-EEEEEeCCCcEEEEECCCC
Q 004214          453 D--------------GSCLKTFEGHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTG  496 (768)
Q Consensus       453 ~--------------~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~  496 (768)
                      .              ..++..+.+|...|++++|+|++. +|++++.||.|+||++..+
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          353 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             GTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            7              367788889999999999999999 8999999999999998753

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.7e-30  Score=267.58  Aligned_cols=261  Identities=11%  Similarity=0.040  Sum_probs=208.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC---------CceEEE
Q 004214          251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE---------SRCCVG  321 (768)
Q Consensus       251 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~  321 (768)
                      ++.++++|+.||.|++||+.+++.+..+.  ...|.++.  +.+.    +++++.|++|++|+..         +++.+.
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~--~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~  118 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGG--EHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLR  118 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTC--CCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeee--eCCc----eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence            56789999999999999999998887776  34555554  3333    8999999999999765         444444


Q ss_pred             eee-cccCcEEEEEEec--CCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe-eccCCCeEEEEEccCCCEEEE
Q 004214          322 VGT-GHMGAVGAVAFSK--KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLVCT  397 (768)
Q Consensus       322 ~~~-~~~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~  397 (768)
                      .+. +|.++|.+++|+|  ++. ++++++.||+|++||+..+.          ..... ..+...+++++|+|++.+|++
T Consensus       119 ~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~----------~~~~~~~~~~~~i~~~~~~pdg~~las  187 (343)
T 3lrv_A          119 EIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDS----------QYIVHSAKSDVEYSSGVLHKDSLLLAL  187 (343)
T ss_dssp             EEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSC----------EEEEECCCSSCCCCEEEECTTSCEEEE
T ss_pred             EeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCc----------EEEEEecCCCCceEEEEECCCCCEEEE
Confidence            443 6778999999999  865 89999999999999998542          22222 345668999999999999999


Q ss_pred             EeCCCcEEEEeCCCCceE-EEEec-cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec---CCCcEE--EE
Q 004214          398 GSQDRTACVWRLPDLVSV-VTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG---HTSSVL--RA  470 (768)
Q Consensus       398 ~~~dg~i~i~d~~~~~~~-~~~~~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~--~~  470 (768)
                      |+.||.|++||+++++.+ ..+.+ |..+|++++|+|++.+|++++ |+.|++||+++++++..+..   |...+.  ++
T Consensus       188 g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  266 (343)
T 3lrv_A          188 YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTY  266 (343)
T ss_dssp             ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEE
T ss_pred             EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEE
Confidence            999999999999999887 78888 999999999999999999999 45999999999887766553   434443  69


Q ss_pred             EEEeCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCCCcEEEEEEcC---CCCEEEEEeCCCcEEEEEc
Q 004214          471 SFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYDKHEDKIWALAVGK---KTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       471 ~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~---~~~~l~s~~~dg~v~vw~~  535 (768)
                      +|+|+|++|++++. |+.|++|++.+.......    .++..++|+|   +...+++++.||.+.++-.
T Consensus       267 ~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  331 (343)
T 3lrv_A          267 DIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILK  331 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred             EECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence            99999999999998 999999999765433222    5677888888   8889999999999988754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.8e-28  Score=259.40  Aligned_cols=268  Identities=15%  Similarity=0.127  Sum_probs=228.1

Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEE
Q 004214          253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA  332 (768)
Q Consensus       253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  332 (768)
                      .++++++.++.|++||+.+++....+..|.. +.+++  +.+++..++++++.|+.|++||+.+++.+..+..+. .+.+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~--~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~   78 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAV--ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQG   78 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEE--ECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEE--ECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccc
Confidence            3677888899999999999999988887765 67877  778888766888899999999999999988887665 8999


Q ss_pred             EEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE-EEEeCCCcEEEEeCCC
Q 004214          333 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV-CTGSQDRTACVWRLPD  411 (768)
Q Consensus       333 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~d~~~  411 (768)
                      ++|+|+++.++++++.++.|++||+..+          ...... .+...+.+++|+|+++.+ ++++.++.|++||+.+
T Consensus        79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~----------~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  147 (391)
T 1l0q_A           79 VAVSPDGKQVYVTNMASSTLSVIDTTSN----------TVAGTV-KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT  147 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTT----------EEEEEE-ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             eEECCCCCEEEEEECCCCEEEEEECCCC----------eEEEEE-eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            9999998865567778899999999753          122222 345678999999999977 6778899999999999


Q ss_pred             CceEEEEeccCCCeEEEEEccCCCEE-EEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEe---CCCc
Q 004214          412 LVSVVTFRGHKRGIWSVEFSPVDQVV-ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG---ADGL  487 (768)
Q Consensus       412 ~~~~~~~~~~~~~v~~v~~s~~~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~dg~  487 (768)
                      ++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+.+++++..+. +...+.+++|+|+|++|++++   .++.
T Consensus       148 ~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~  225 (391)
T 1l0q_A          148 KAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNT  225 (391)
T ss_dssp             TEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred             CcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCc
Confidence            9988888765 456999999999877 577888999999999999888877 566889999999999999888   6899


Q ss_pred             EEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCH
Q 004214          488 VKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF-ATGGSDALVNLWHDSTA  538 (768)
Q Consensus       488 i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~s~~~dg~v~vw~~~~~  538 (768)
                      |++||+.+++++..+..|. .+.+++|+|++++| ++++.|+.|++|+..++
T Consensus       226 v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~  276 (391)
T 1l0q_A          226 VSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN  276 (391)
T ss_dssp             EEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence            9999999999999988655 57899999999987 67788999999998764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=1.6e-28  Score=268.12  Aligned_cols=331  Identities=14%  Similarity=0.139  Sum_probs=249.0

Q ss_pred             EEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCeeeeeeec
Q 004214           37 LFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL--RDYSCKLTVPT  114 (768)
Q Consensus        37 ~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~--~~~~~~~~~~~  114 (768)
                      +|+|++..  +++++.|++|.+||..+++++.++..+.. +.+++|+|||++|++++.|+.|.+||+  .+++++.+++.
T Consensus       144 ~~~p~~~~--~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~  220 (543)
T 1nir_A          144 DLDLPNLF--SVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI  220 (543)
T ss_dssp             CCCGGGEE--EEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred             ccCCCCEE--EEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec
Confidence            48887654  89999999999999999999999984433 889999999999999999999999999  78777666655


Q ss_pred             ceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCccccee
Q 004214          115 YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFT  194 (768)
Q Consensus       115 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (768)
                      ...+..++|+|..                                                                   
T Consensus       221 g~~p~~va~sp~~-------------------------------------------------------------------  233 (543)
T 1nir_A          221 GIEARSVESSKFK-------------------------------------------------------------------  233 (543)
T ss_dssp             CSEEEEEEECCST-------------------------------------------------------------------
T ss_pred             CCCcceEEeCCCc-------------------------------------------------------------------
Confidence            4444444444400                                                                   


Q ss_pred             EEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEe-CCCcEEEEECCCce
Q 004214          195 AATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT-NIEQVQVYDLSSMS  273 (768)
Q Consensus       195 ~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~  273 (768)
                                                                            ..++++++++. .++.|.+||..+++
T Consensus       234 ------------------------------------------------------~~dg~~l~v~~~~~~~v~v~D~~t~~  259 (543)
T 1nir_A          234 ------------------------------------------------------GYEDRYTIAGAYWPPQFAIMDGETLE  259 (543)
T ss_dssp             ------------------------------------------------------TCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             ------------------------------------------------------CCCCCEEEEEEccCCeEEEEeccccc
Confidence                                                                  00233333333 24556666665555


Q ss_pred             eeeeeeCC-----------ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE--eeecccCcEEEEEEecCCC
Q 004214          274 CSYVLAGH-----------SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG--VGTGHMGAVGAVAFSKKLQ  340 (768)
Q Consensus       274 ~~~~~~~~-----------~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~  340 (768)
                      ++..+..+           ...+.++.  +++++..++++...++.|.+||+.+.+.+.  .+ .+...+..++|+|+++
T Consensus       260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~--~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~  336 (543)
T 1nir_A          260 PKQIVSTRGMTVDTQTYHPEPRVAAII--ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHR  336 (543)
T ss_dssp             EEEEEECCEECSSSCCEESCCCEEEEE--ECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSC
T ss_pred             cceeecccCcccCccccccCCceEEEE--ECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCC
Confidence            55554431           22466665  777788888899999999999998765433  33 3556678899999988


Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee----ccCCCeEEEEEccC-CCEEEEEe-CCCcEEEEeCCC---
Q 004214          341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA----AHGKDINSLAVAPN-DSLVCTGS-QDRTACVWRLPD---  411 (768)
Q Consensus       341 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~s~~-~~~l~~~~-~dg~i~i~d~~~---  411 (768)
                      .+++++..+++|.+||...+.          ......    .|......+ ++|+ +..++++. .|++|.+||+.+   
T Consensus       337 ~l~va~~~~~~v~v~D~~tg~----------l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~  405 (543)
T 1nir_A          337 YFMTAANNSNKVAVIDSKDRR----------LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH  405 (543)
T ss_dssp             EEEEEEGGGTEEEEEETTTTE----------EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred             EEEEEecCCCeEEEEECCCCe----------EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC
Confidence            656666779999999998542          222222    254433333 4676 66667765 589999999998   


Q ss_pred             ----CceEEEEeccCCCeEEEEEccCCCEEEEee-------CCCcEEEEeCCCCcee-EEe--------ecCCCcEEEEE
Q 004214          412 ----LVSVVTFRGHKRGIWSVEFSPVDQVVITAS-------GDKTIKIWSISDGSCL-KTF--------EGHTSSVLRAS  471 (768)
Q Consensus       412 ----~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~-------~d~~i~iwd~~~~~~~-~~~--------~~~~~~v~~~~  471 (768)
                          ++.+.++.+|...+..++|+|++++|++++       .+++|.+||+.+++.. ..+        ..+...+..+.
T Consensus       406 ~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  485 (543)
T 1nir_A          406 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE  485 (543)
T ss_dssp             TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEE
T ss_pred             chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEecc
Confidence                899999999999999999999999999987       2679999999999887 444        35678899999


Q ss_pred             EEeCCCEEEEEe-----CCCcEEEEECCCCeEEEEeccC
Q 004214          472 FLTRGAQIVSCG-----ADGLVKLWTVRTGECIATYDKH  505 (768)
Q Consensus       472 ~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~  505 (768)
                      |+|+|++++++.     .|+.|.|||.++++++.++..+
T Consensus       486 ~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~  524 (543)
T 1nir_A          486 YNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP  524 (543)
T ss_dssp             ECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             CCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence            999999988663     4799999999999999999753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1.5e-30  Score=274.37  Aligned_cols=268  Identities=12%  Similarity=0.056  Sum_probs=189.0

Q ss_pred             eEEEEecCCCCEEEEEeCCCcEEEEECCCceee-----eeeeCCccceEEEeeeee-----cCCCEEEEEEeCCCeEEEE
Q 004214          243 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS-----YVLAGHSEIVLCLDTCAL-----SSGKILIVTGSKDNSVRLW  312 (768)
Q Consensus       243 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~-----~~~~~~~~~v~~l~~~~~-----~~~~~~l~~~~~dg~i~iw  312 (768)
                      ..+.+.+++..++++++.|+.|++||..++...     ..+.+|.+.|.+++++..     +.++.+|++|+.|++|++|
T Consensus        92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W  171 (393)
T 4gq1_A           92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW  171 (393)
T ss_dssp             -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred             cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence            445556677889999999999999999887654     346899999999984331     1245569999999999999


Q ss_pred             eCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccc---------------cccceeeEee
Q 004214          313 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP---------------MNLKAKAVVA  377 (768)
Q Consensus       313 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------------~~~~~~~~~~  377 (768)
                      |+.++.++..+..|..++.+++|+|++..+|++++.||+|++||+..........               ..........
T Consensus       172 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  251 (393)
T 4gq1_A          172 RLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS  251 (393)
T ss_dssp             EEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred             ECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence            9999888888889999999999999987789999999999999998654322110               0011122235


Q ss_pred             ccCCCeEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce
Q 004214          378 AHGKDINSLAVA-PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC  456 (768)
Q Consensus       378 ~~~~~i~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~  456 (768)
                      +|...+.++.|+ |+++.+++++.|+++++||+..+.....+..|...+..+.+.|+.+.+....               
T Consensus       252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------  316 (393)
T 4gq1_A          252 GIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFP---------------  316 (393)
T ss_dssp             CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSC---------------
T ss_pred             cccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccC---------------
Confidence            678889999987 7999999999999999999999888888888888888888887654332211               


Q ss_pred             eEEeecCCCcEEEEEEEe--CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214          457 LKTFEGHTSSVLRASFLT--RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  534 (768)
Q Consensus       457 ~~~~~~~~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~  534 (768)
                              ..+. ..|+|  ++.++++|+.||.|++||+.+++++..+..|..+|.+++|+|||++||+++.+| +.+|+
T Consensus       317 --------~~~~-~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvr  386 (393)
T 4gq1_A          317 --------SLLG-ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTR  386 (393)
T ss_dssp             --------CSSC-CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred             --------ccee-EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence                    1111 23333  445677888999999999999999888888999999999999999999999877 55555


Q ss_pred             c
Q 004214          535 D  535 (768)
Q Consensus       535 ~  535 (768)
                      +
T Consensus       387 L  387 (393)
T 4gq1_A          387 L  387 (393)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=6.4e-28  Score=263.29  Aligned_cols=338  Identities=13%  Similarity=0.090  Sum_probs=260.9

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEEC--CCCeeEEEecCccceeEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL--LAKKCVATLDKHFSRVTS   79 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~--~~~~~~~~l~~h~~~V~~   79 (768)
                      ++++++.|++|.+||..+++++..+..+.. +.+++|+|||++  |++++.|++|.+||+  .+++++.++.. ...+..
T Consensus       151 ~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~--l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~  226 (543)
T 1nir_A          151 FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRY--LLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARS  226 (543)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCE--EEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEE
T ss_pred             EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCE--EEEECCCCeEEEEECcCCCCcEEEEEec-CCCcce
Confidence            578899999999999999999999984333 899999999998  999999999999999  89999999884 456899


Q ss_pred             EEEcC----CCCEEEEEeC-CCeEEEEECCCCeeeeeeeccee-EeeEEecCCCCCccccccccchhhhhcccCCcceEE
Q 004214           80 MAITS----DGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF  153 (768)
Q Consensus        80 l~fs~----d~~~L~s~~~-dg~i~vWd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (768)
                      ++|+|    ||++|++++. +++|.+||..+++++.+++.... +....+                              
T Consensus       227 va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~------------------------------  276 (543)
T 1nir_A          227 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY------------------------------  276 (543)
T ss_dssp             EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE------------------------------
T ss_pred             EEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccc------------------------------
Confidence            99999    9999999884 89999999999887766643210 000000                              


Q ss_pred             EEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEe
Q 004214          154 ITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK  233 (768)
Q Consensus       154 ~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~  233 (768)
                                                                                                      
T Consensus       277 --------------------------------------------------------------------------------  276 (543)
T 1nir_A          277 --------------------------------------------------------------------------------  276 (543)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeee--eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEE
Q 004214          234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY--VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL  311 (768)
Q Consensus       234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~i  311 (768)
                         .....+..+.+++.+..++++...++.|.+||..+.....  .+. +...+..+.  +.++++.+++++..+++|.+
T Consensus       277 ---~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~--~spdg~~l~va~~~~~~v~v  350 (543)
T 1nir_A          277 ---HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGG--WDSSHRYFMTAANNSNKVAV  350 (543)
T ss_dssp             ---ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEE--ECTTSCEEEEEEGGGTEEEE
T ss_pred             ---ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCce--ECCCCCEEEEEecCCCeEEE
Confidence               0011455666666666677777778899999988765443  332 444555565  77888876667777999999


Q ss_pred             EeCCCceEEEeeec----ccCcEEEEEEecCCCcEEEEEe-CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEE
Q 004214          312 WDSESRCCVGVGTG----HMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL  386 (768)
Q Consensus       312 wd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  386 (768)
                      ||..+++++..+..    |.+....+ ++|++..+++++. .|++|.+||+......   ....+....+..|...+..+
T Consensus       351 ~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~---~~~~~~v~~l~~~g~~~~~v  426 (543)
T 1nir_A          351 IDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP---QYAWKKVAELQGQGGGSLFI  426 (543)
T ss_dssp             EETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT---TTBTSEEEEEECSCSCCCCE
T ss_pred             EECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc---hhcCeEEEEEEcCCCCceEE
Confidence            99999999887764    55444333 5787565777776 6899999999852111   11256777888888888999


Q ss_pred             EEccCCCEEEEEe-------CCCcEEEEeCCCCceE-EEE--------eccCCCeEEEEEccCCCEEEEee-----CCCc
Q 004214          387 AVAPNDSLVCTGS-------QDRTACVWRLPDLVSV-VTF--------RGHKRGIWSVEFSPVDQVVITAS-----GDKT  445 (768)
Q Consensus       387 ~~s~~~~~l~~~~-------~dg~i~i~d~~~~~~~-~~~--------~~~~~~v~~v~~s~~~~~l~t~~-----~d~~  445 (768)
                      +++|++++|++++       .+++|.+||+.+++.. ..+        ..+...+..+.|+|+|+.++++.     .|+.
T Consensus       427 ~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~  506 (543)
T 1nir_A          427 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSA  506 (543)
T ss_dssp             ECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCE
T ss_pred             EcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCe
Confidence            9999999999987       2679999999998877 443        34577899999999999988763     4799


Q ss_pred             EEEEeCCCCceeEEeecC
Q 004214          446 IKIWSISDGSCLKTFEGH  463 (768)
Q Consensus       446 i~iwd~~~~~~~~~~~~~  463 (768)
                      |.|||..+++++++++.+
T Consensus       507 i~v~D~~t~~~~~~i~~~  524 (543)
T 1nir_A          507 LVVVDDKTLKLKAVVKDP  524 (543)
T ss_dssp             EEEEETTTTEEEEEECCT
T ss_pred             EEEEECCCceEEEeecCC
Confidence            999999999999998854

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.5e-29  Score=287.61  Aligned_cols=249  Identities=24%  Similarity=0.348  Sum_probs=215.5

Q ss_pred             eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECC--CceeeeeeeCCccceEEEeeeeecC--CCEEEEEEeCCCeE
Q 004214          234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS--SMSCSYVLAGHSEIVLCLDTCALSS--GKILIVTGSKDNSV  309 (768)
Q Consensus       234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~~~~~~~~v~~l~~~~~~~--~~~~l~~~~~dg~i  309 (768)
                      .+.+|.+.|.+++|++ +++++++|+.+|.|++||+.  ++.....+.+|...|.++.  +.++  +. ++++|+.||.|
T Consensus         4 ~l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~--~s~~~~~~-~l~s~s~Dg~I   79 (753)
T 3jro_A            4 IANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVD--WAHPKFGT-ILASCSYDGKV   79 (753)
T ss_dssp             ----CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEE--ECCTTSCS-EEEEEETTSCE
T ss_pred             ecccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEE--ecCCCCCC-EEEEEeCCCeE
Confidence            4578999999999985 67799999999999999998  5677788999999999998  6555  55 49999999999


Q ss_pred             EEEeCCCce--EEEeeecccCcEEEEEEecC--CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214          310 RLWDSESRC--CVGVGTGHMGAVGAVAFSKK--LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS  385 (768)
Q Consensus       310 ~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  385 (768)
                      ++||+.++.  ....+.+|...|.+++|+|+  +. ++++|+.||.|++||+....        .........|...|.+
T Consensus        80 ~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~--------~~~~~~~~~~~~~v~~  150 (753)
T 3jro_A           80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENG--------TTSPIIIDAHAIGVNS  150 (753)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSS--------CCCCEEEECCSSCEEE
T ss_pred             EEEECCCCcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCC--------CcceeEeecCCCceEE
Confidence            999999987  67778899999999999998  55 89999999999999998642        1233455789999999


Q ss_pred             EEEcc-------------CCCEEEEEeCCCcEEEEeCCCC----ceEEEEeccCCCeEEEEEccC---CCEEEEeeCCCc
Q 004214          386 LAVAP-------------NDSLVCTGSQDRTACVWRLPDL----VSVVTFRGHKRGIWSVEFSPV---DQVVITASGDKT  445 (768)
Q Consensus       386 ~~~s~-------------~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~v~~s~~---~~~l~t~~~d~~  445 (768)
                      ++|+|             ++.++++|+.||.|++||++++    .....+.+|..+|++++|+|+   +++|++|+.||.
T Consensus       151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~  230 (753)
T 3jro_A          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT  230 (753)
T ss_dssp             EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred             EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence            99999             5899999999999999999876    556778899999999999999   899999999999


Q ss_pred             EEEEeCCCCc-----eeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214          446 IKIWSISDGS-----CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       446 i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  495 (768)
                      |++||+.++.     .+....+|...|++++|+|+|++|++|+.||.|++|++.+
T Consensus       231 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            9999998874     3344456889999999999999999999999999999874

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=6.8e-28  Score=254.07  Aligned_cols=224  Identities=10%  Similarity=0.072  Sum_probs=162.7

Q ss_pred             eeecccCCceeEEEEec-------CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeC
Q 004214          233 KRLVGYNEEILDLKFLG-------EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK  305 (768)
Q Consensus       233 ~~~~~~~~~i~~~~~~~-------~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~  305 (768)
                      ..+.||.+.|.+++|+|       .++++||+++.|++|++||+.++.....+.+|...+.+++  +.|++..+|++|+.
T Consensus       130 ~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~--~~p~~~~~l~~~~~  207 (393)
T 4gq1_A          130 GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQ--FRPSNPNQLIVGER  207 (393)
T ss_dssp             CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEE--EETTEEEEEEEEET
T ss_pred             cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEE--ECCCCCceEEecCC
Confidence            45678999999999986       3678999999999999999999888888889999999998  77888777999999


Q ss_pred             CCeEEEEeCCCceEEEe-------------------------eecccCcEEEEEEe-cCCCcEEEEEeCCCeEEEEeCCC
Q 004214          306 DNSVRLWDSESRCCVGV-------------------------GTGHMGAVGAVAFS-KKLQNFLVSGSSDHTIKVWSFDG  359 (768)
Q Consensus       306 dg~i~iwd~~~~~~~~~-------------------------~~~~~~~v~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~  359 (768)
                      ||+|++||+.+++....                         ..+|...+.++.|. |++. .+++++.|+++++||+..
T Consensus       208 d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~  286 (393)
T 4gq1_A          208 NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFA  286 (393)
T ss_dssp             TSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC--
T ss_pred             CCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECcc
Confidence            99999999987654322                         23577888999987 5644 899999999999999874


Q ss_pred             CCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEcc-CCCEEE
Q 004214          360 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP-VDQVVI  438 (768)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~  438 (768)
                      ..          ....+..|...+..+.+.|+.+.+                       ..+...+..+.+.+ ++.+++
T Consensus       287 ~~----------~~~~l~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~  333 (393)
T 4gq1_A          287 NN----------DYNEISDSTMKLGPKNLLPNVQGI-----------------------SLFPSLLGACPHPRYMDYFAT  333 (393)
T ss_dssp             ---------------------------CCSCSEEEE-----------------------CSSCCSSCCEECSSCTTEEEE
T ss_pred             CC----------CCceEeeecCccccEEEccccccc-----------------------cccCcceeEEEccCCCCEEEE
Confidence            32          222233455555555555543222                       22222233333333 345677


Q ss_pred             EeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214          439 TASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       439 t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  493 (768)
                      +|+.||+|++||+.++.++..+.+|..+|++++|+|||++|++++.+| +.+|.+
T Consensus       334 sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          334 AHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             EETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             EECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            888999999999999999999999999999999999999999999877 555554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=2.9e-26  Score=242.93  Aligned_cols=288  Identities=13%  Similarity=0.038  Sum_probs=218.1

Q ss_pred             EEEeec----CCC----cEEEEEC--CCCEEE--EEEEcCCCcEEEEEEeeC--------------CCccEEEEEeCC--
Q 004214            2 FALLEG----ADR----KVLVWDV--DGGFCT--HYFKGHKGVVSSILFHPD--------------TDKSLLFSGSDD--   53 (768)
Q Consensus         2 ~latg~----~dg----~i~vwd~--~~~~~~--~~l~gh~~~V~~l~~spd--------------~~~~~l~sg~~d--   53 (768)
                      ++|+|+    .||    .|++||+  .+++++  ..+.+|...+..+++++.              +.+  ++.++.+  
T Consensus        77 ~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~--l~~~s~~~~  154 (415)
T 2hqs_A           77 AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTR--IAYVVQTNG  154 (415)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCE--EEEEEECSS
T ss_pred             EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCE--EEEEEecCC
Confidence            466765    567    9999999  999887  558999999998888761              444  5554443  


Q ss_pred             ----CcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeeeeeeecceeEeeEEecCC
Q 004214           54 ----ATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK---VVNLWDLRDYSCKLTVPTYEMVEAVCAIPP  126 (768)
Q Consensus        54 ----g~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg---~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~  126 (768)
                          +.|++||+. +.....+.+|...|.+++|+|||++|++++.++   .|++||+.+++..                 
T Consensus       155 ~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-----------------  216 (415)
T 2hqs_A          155 GQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-----------------  216 (415)
T ss_dssp             SSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-----------------
T ss_pred             CCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-----------------
Confidence                799999996 555677888999999999999999999999775   7888877654321                 


Q ss_pred             CCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceE
Q 004214          127 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLL  206 (768)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  206 (768)
                                                                                                      
T Consensus       217 --------------------------------------------------------------------------------  216 (415)
T 2hqs_A          217 --------------------------------------------------------------------------------  216 (415)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceE
Q 004214          207 CVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVL  286 (768)
Q Consensus       207 ~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~  286 (768)
                                                                                            .+..|...+.
T Consensus       217 ----------------------------------------------------------------------~l~~~~~~~~  226 (415)
T 2hqs_A          217 ----------------------------------------------------------------------QVASFPRHNG  226 (415)
T ss_dssp             ----------------------------------------------------------------------EEECCSSCEE
T ss_pred             ----------------------------------------------------------------------EeecCCCccc
Confidence                                                                                  1111223344


Q ss_pred             EEeeeeecCCCEEEEEEeCCC--eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeC-CC--eEEEEeCCCCC
Q 004214          287 CLDTCALSSGKILIVTGSKDN--SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS-DH--TIKVWSFDGLS  361 (768)
Q Consensus       287 ~l~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~  361 (768)
                      +++  ++|++..++++++.+|  .|++||+.+++. ..+..|...+.+++|+|+++ .|++++. ++  .|.+||+..+.
T Consensus       227 ~~~--~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~-~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          227 APA--FSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             EEE--ECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSC
T ss_pred             CEE--EcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCC-EEEEEECCCCCcEEEEEECCCCC
Confidence            444  6666666444666555  499999988876 45677888999999999987 4555554 55  57777876432


Q ss_pred             CCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEE
Q 004214          362 DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI  438 (768)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  438 (768)
                                 ......+...+.+++|+|+|++|++++.+   +.|++||+.+++.. .+..+. .+.+++|+|+|++|+
T Consensus       303 -----------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~  369 (415)
T 2hqs_A          303 -----------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVI  369 (415)
T ss_dssp             -----------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEE
T ss_pred             -----------EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEE
Confidence                       12223456678899999999999988764   58999999988764 455554 899999999999999


Q ss_pred             EeeCCC---cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCC
Q 004214          439 TASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA  477 (768)
Q Consensus       439 t~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  477 (768)
                      +++.++   .|++||+. +.....+.+|.+.|.+++|+|...
T Consensus       370 ~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          370 YSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred             EEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence            988877   79999986 677888999999999999999643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=5e-25  Score=253.53  Aligned_cols=194  Identities=9%  Similarity=0.056  Sum_probs=147.0

Q ss_pred             EEEEEEecCCCcEEEEEeCCC---------------------------------eEEEEeCCC-CCCCCccccccceeeE
Q 004214          330 VGAVAFSKKLQNFLVSGSSDH---------------------------------TIKVWSFDG-LSDDAEQPMNLKAKAV  375 (768)
Q Consensus       330 v~~~~~~~~~~~~l~s~~~dg---------------------------------~i~iwd~~~-~~~~~~~~~~~~~~~~  375 (768)
                      +.+++|+|+|+. |++++.|+                                 .|.+||+.. +..          ...
T Consensus       211 ~~~~~~SpDg~~-l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~----------~~~  279 (741)
T 2ecf_A          211 HTGYWWAPDDSA-IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT----------QWI  279 (741)
T ss_dssp             CCSEEECTTSSC-EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC----------EEE
T ss_pred             ccceEECCCCCE-EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce----------EEe
Confidence            477899999874 66665544                                 788888865 321          111


Q ss_pred             e--eccCCCeEEEEEccCCCEEEEEeC-----CCcEEEEeCCCCceEEEEeccCC----CeEEEEEccCCCEEEEeeCCC
Q 004214          376 V--AAHGKDINSLAVAPNDSLVCTGSQ-----DRTACVWRLPDLVSVVTFRGHKR----GIWSVEFSPVDQVVITASGDK  444 (768)
Q Consensus       376 ~--~~~~~~i~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~----~v~~v~~s~~~~~l~t~~~d~  444 (768)
                      .  ..|...+.+++| |||+.|++++.     +..|++||+.+++....+..+..    .+.+++|+|+|+++++++.||
T Consensus       280 ~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g  358 (741)
T 2ecf_A          280 DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTG  358 (741)
T ss_dssp             CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTS
T ss_pred             cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCC
Confidence            1  146678899999 99999997764     56799999999988777766554    456899999999999999999


Q ss_pred             cEEEEeCC-CCceeEEeecCCCcEEEE-EEEeCCCEEEE-EeCCC--cEEEEECCC-CeEEEEeccCCCcEEEEEEcCCC
Q 004214          445 TIKIWSIS-DGSCLKTFEGHTSSVLRA-SFLTRGAQIVS-CGADG--LVKLWTVRT-GECIATYDKHEDKIWALAVGKKT  518 (768)
Q Consensus       445 ~i~iwd~~-~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s-~~~dg--~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~  518 (768)
                      .++||.+. ++. ...+..|...+..+ .|+|+|+.|+. ++.++  .++||++.. +.....+.. ...+.+++|+|||
T Consensus       359 ~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg  436 (741)
T 2ecf_A          359 FQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNA  436 (741)
T ss_dssp             SCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTS
T ss_pred             ccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCC
Confidence            88888765 455 78888888889887 59999998754 44455  899999874 665666664 6678899999999


Q ss_pred             CEEEEEeCC----CcEEEEEcCC
Q 004214          519 EMFATGGSD----ALVNLWHDST  537 (768)
Q Consensus       519 ~~l~s~~~d----g~v~vw~~~~  537 (768)
                      ++|+....+    +.+.+|+...
T Consensus       437 ~~l~~~~~~~~~p~~~~l~~~~~  459 (741)
T 2ecf_A          437 SVYVDSWSNNSTPPQIELFRANG  459 (741)
T ss_dssp             SEEEEEEEETTEEEEEEEEETTS
T ss_pred             CEEEEEecCCCCCCeEEEEEcCC
Confidence            998876544    4588888643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=7.4e-25  Score=232.07  Aligned_cols=238  Identities=11%  Similarity=0.071  Sum_probs=193.9

Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC---eEEEEeCCCceEEEeeecccCcEEEEEEecC
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN---SVRLWDSESRCCVGVGTGHMGAVGAVAFSKK  338 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  338 (768)
                      +.|++||... .....+.+|...+.+++  ++|++.. |++++.++   .|++||+.+++.. .+..|...+.+++|+|+
T Consensus       159 ~~i~i~d~~g-~~~~~l~~~~~~v~~~~--~Spdg~~-la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spd  233 (415)
T 2hqs_A          159 YELRVSDYDG-YNQFVVHRSPQPLMSPA--WSPDGSK-LAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPD  233 (415)
T ss_dssp             EEEEEEETTS-CSCEEEEEESSCEEEEE--ECTTSSE-EEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTT
T ss_pred             ceEEEEcCCC-CCCEEEeCCCCcceeeE--EcCCCCE-EEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCC
Confidence            7999999974 45667888999999998  7788876 78887775   9999999998775 45678889999999999


Q ss_pred             CCcEEEEEeCCCe--EEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCc
Q 004214          339 LQNFLVSGSSDHT--IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLV  413 (768)
Q Consensus       339 ~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~  413 (768)
                      |+.++++++.++.  |.+||+..+.           ...+..|...+.+++|+|+|+.|++++. ++  .|++||+.+++
T Consensus       234 g~~la~~~~~~g~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          234 GSKLAFALSKTGSLNLYVMDLASGQ-----------IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCC-----------EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             CCEEEEEEecCCCceEEEEECCCCC-----------EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence            8855557776655  8999987531           2344567788999999999999998886 44  67888988876


Q ss_pred             eEEEEeccCCCeEEEEEccCCCEEEEeeCC---CcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCC---c
Q 004214          414 SVVTFRGHKRGIWSVEFSPVDQVVITASGD---KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG---L  487 (768)
Q Consensus       414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~  487 (768)
                      . ..+..+...+.+++|+|+|++|++++.+   ..|++||+.++++ ..+..|. .+.+++|+|+|++|++++.++   .
T Consensus       303 ~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~  379 (415)
T 2hqs_A          303 P-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSV  379 (415)
T ss_dssp             C-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEE
T ss_pred             E-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccE
Confidence            4 3455677789999999999999988764   5899999998877 4555554 899999999999999988877   7


Q ss_pred             EEEEECCCCeEEEEeccCCCcEEEEEEcCCCC
Q 004214          488 VKLWTVRTGECIATYDKHEDKIWALAVGKKTE  519 (768)
Q Consensus       488 i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~  519 (768)
                      |++||+. +.....+..|.+.|.+++|+|...
T Consensus       380 l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          380 LNLVSTD-GRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred             EEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence            9999986 666778888999999999999754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=8.2e-24  Score=242.76  Aligned_cols=353  Identities=11%  Similarity=0.060  Sum_probs=228.6

Q ss_pred             CcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccc---eeEEEEEcCCCCEEEEEeCC---------CeE
Q 004214           31 GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFS---RVTSMAITSDGSTLISAGRD---------KVV   98 (768)
Q Consensus        31 ~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~---~V~~l~fs~d~~~L~s~~~d---------g~i   98 (768)
                      ..+.+++|+|||++  +++ +.||+|++||+.+++....+.+|..   .|.+++|||||++|++++.+         +.+
T Consensus        17 ~~~~~~~~spdg~~--~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           17 IHDPEAKWISDTEF--IYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCCCCCCBSSSSCB--CCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred             ccccccEEcCCCcE--EEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence            34678899999986  666 7899999999999998888887765   49999999999999999875         566


Q ss_pred             EEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCC
Q 004214           99 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS  178 (768)
Q Consensus        99 ~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~  178 (768)
                      .+||+.+++. ..+...                                                               
T Consensus        94 ~~~d~~~~~~-~~l~~~---------------------------------------------------------------  109 (723)
T 1xfd_A           94 VLSKIPHGDP-QSLDPP---------------------------------------------------------------  109 (723)
T ss_dssp             EEEESSSCCC-EECCCT---------------------------------------------------------------
T ss_pred             EEEECCCCce-EeccCC---------------------------------------------------------------
Confidence            7777766553 111100                                                               


Q ss_pred             ceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEE
Q 004214          179 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA  258 (768)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  258 (768)
                                                                               .++...+..++|+| +++.++.+
T Consensus       110 ---------------------------------------------------------~~~~~~~~~~~~SP-dG~~la~~  131 (723)
T 1xfd_A          110 ---------------------------------------------------------EVSNAKLQYAGWGP-KGQQLIFI  131 (723)
T ss_dssp             ---------------------------------------------------------TCCSCCCSBCCBCS-STTCEEEE
T ss_pred             ---------------------------------------------------------ccccccccccEECC-CCCEEEEE
Confidence                                                                     00111123333332 44444444


Q ss_pred             eCCCcEEEEECCCceeeeeeeCCccc------------------eEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214          259 TNIEQVQVYDLSSMSCSYVLAGHSEI------------------VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV  320 (768)
Q Consensus       259 ~~~~~i~i~d~~~~~~~~~~~~~~~~------------------v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  320 (768)
                      +. +.|++||+.++........+...                  +.++.  ++|+++.++++...++.+.+|++....  
T Consensus       132 ~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~--~SpDg~~la~~~~~~~~~~~~~~~~~~--  206 (723)
T 1xfd_A          132 FE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW--WSPDGTRLAYAAINDSRVPIMELPTYT--  206 (723)
T ss_dssp             ET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE--ECTTSSEEEEEEEECTTSCEEEECCCS--
T ss_pred             EC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEE--ECCCCCEEEEEEECCCccceEEeeccC--
Confidence            44 45666666655554444333222                  25565  778888744444445677788764321  


Q ss_pred             EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC
Q 004214          321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ  400 (768)
Q Consensus       321 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  400 (768)
                         ..+...+..+.|.++|..     ..+..|.+||+.......    ..........+...+.+++|+|||+++++...
T Consensus       207 ---~~~~~~~~~~~~~~~G~~-----~~~~~l~~~d~~~~~~~~----~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~  274 (723)
T 1xfd_A          207 ---GSIYPTVKPYHYPKAGSE-----NPSISLHVIGLNGPTHDL----EMMPPDDPRMREYYITMVKWATSTKVAVTWLN  274 (723)
T ss_dssp             ---SSSSCCCEEEECCBTTSC-----CCEEEEEEEESSSSCCCE----ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEE
T ss_pred             ---CcCCCcceeccCCCCCCC-----CCeeEEEEEECCCCceeE----EeeCCccCCCccceeEEEEEeCCCeEEEEEEc
Confidence               113345788888887652     334589999997543110    00000011123567899999999998877653


Q ss_pred             ----CCcEEEEeCCCCceEEEEecc-CCCe----EEEEEccCCCEEEE--eeCCC------cEEEEe-CCCCc--eeEEe
Q 004214          401 ----DRTACVWRLPDLVSVVTFRGH-KRGI----WSVEFSPVDQVVIT--ASGDK------TIKIWS-ISDGS--CLKTF  460 (768)
Q Consensus       401 ----dg~i~i~d~~~~~~~~~~~~~-~~~v----~~v~~s~~~~~l~t--~~~d~------~i~iwd-~~~~~--~~~~~  460 (768)
                          +..|++||+.+++....+..+ ...+    ..++|+|||+.|+.  +..++      .|.+|| ...+.  +...+
T Consensus       275 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l  354 (723)
T 1xfd_A          275 RAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI  354 (723)
T ss_dssp             TTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS
T ss_pred             CCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEe
Confidence                357999999998877665543 3333    37899999997665  45666      577777 34444  15556


Q ss_pred             ecCCCcEEE-EEEEeCCCEEEEEeCC---CcEEEEECCCC--eEEEEecc---CCCcEEEEEEcCCCCEEEEEe
Q 004214          461 EGHTSSVLR-ASFLTRGAQIVSCGAD---GLVKLWTVRTG--ECIATYDK---HEDKIWALAVGKKTEMFATGG  525 (768)
Q Consensus       461 ~~~~~~v~~-~~~s~~~~~l~s~~~d---g~i~iwd~~~~--~~~~~~~~---~~~~v~~l~~s~~~~~l~s~~  525 (768)
                      ..+...+.. ++|+|+|++|+..+.+   +.+++|++...  .....+..   |...+..++|+|+|++|+...
T Consensus       355 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          355 TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence            544455554 6999999999766655   78999998643  23334443   567788999999999888654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=1.3e-22  Score=231.90  Aligned_cols=216  Identities=11%  Similarity=0.109  Sum_probs=146.9

Q ss_pred             CCCeEEEEeCCCceEEEeee--cccCcEEEEEEecCCCcEEEEEeCCC-----eEEEEeCCCCCCCCccccccceeeEe-
Q 004214          305 KDNSVRLWDSESRCCVGVGT--GHMGAVGAVAFSKKLQNFLVSGSSDH-----TIKVWSFDGLSDDAEQPMNLKAKAVV-  376 (768)
Q Consensus       305 ~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~-  376 (768)
                      .++.|++||+.+++......  .|...+.+++|+|+|+ .+++++.++     .|.+||+..+.         ...... 
T Consensus       233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~---------~~~~~~~  302 (706)
T 2z3z_A          233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGR---------FVRTLFV  302 (706)
T ss_dssp             CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCC---------EEEEEEE
T ss_pred             CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCc---------eeeEEEE
Confidence            44689999999988765543  4667899999999987 567666665     89999987541         011111 


Q ss_pred             eccCC---CeEEEEEcc--CCCEEEEEeCCCcEEEEeCC-CCceEEEEeccCCCeEE-EEEccCCCEEEEeeC-CC----
Q 004214          377 AAHGK---DINSLAVAP--NDSLVCTGSQDRTACVWRLP-DLVSVVTFRGHKRGIWS-VEFSPVDQVVITASG-DK----  444 (768)
Q Consensus       377 ~~~~~---~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~-v~~s~~~~~l~t~~~-d~----  444 (768)
                      ..+..   .+.+++|+|  +|++++++..||.+++|.+. ++..+..+..+...+.+ ++|+|+++.|+.++. ++    
T Consensus       303 ~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~  382 (706)
T 2z3z_A          303 ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLER  382 (706)
T ss_dssp             EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCB
T ss_pred             ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceE
Confidence            11221   246789999  99999999999999999886 66777788888888877 799999987766554 33    


Q ss_pred             cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCC----CcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCE
Q 004214          445 TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD----GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEM  520 (768)
Q Consensus       445 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~  520 (768)
                      .|..||+.++. ...+. |...+.+++|+|+|++++.++.+    +.|++||+.+++ ...+. +..++....+.+.. .
T Consensus       383 ~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~-~~~~~~~~~~~~~~-~  457 (706)
T 2z3z_A          383 HFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLE-AKNPDTGYAMPEIR-T  457 (706)
T ss_dssp             EEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEE-CC------CCCCEE-E
T ss_pred             EEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeecc-ccchhhhcCCCCcE-E
Confidence            67777877765 44444 67789999999999998876543    469999999887 43333 44444444333222 2


Q ss_pred             EEEEeCCC--cEEEEEc
Q 004214          521 FATGGSDA--LVNLWHD  535 (768)
Q Consensus       521 l~s~~~dg--~v~vw~~  535 (768)
                      +...+.||  .+..|-.
T Consensus       458 ~~~~~~~g~~~~~~~~~  474 (706)
T 2z3z_A          458 GTIMAADGQTPLYYKLT  474 (706)
T ss_dssp             EEEECTTSSSEEEEEEE
T ss_pred             EEEEcCCCCEEEEEEEE
Confidence            22333444  4554443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=2.6e-22  Score=206.66  Aligned_cols=276  Identities=11%  Similarity=0.084  Sum_probs=204.5

Q ss_pred             EecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE-EEeeec
Q 004214          247 FLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTG  325 (768)
Q Consensus       247 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~  325 (768)
                      |.......++++..++.|.+||..+++....+..+...+ +++  +.++++.+++++..++.|.+||..+++. ...+..
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~--~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTA--ITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEE--ECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEE--EcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            444455667788889999999999999888877766666 776  7788887566666689999999999887 777777


Q ss_pred             ccCcEEEEEEecCCCcEEEEEeCC-C--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE-eCC
Q 004214          326 HMGAVGAVAFSKKLQNFLVSGSSD-H--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQD  401 (768)
Q Consensus       326 ~~~~v~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d  401 (768)
                      +..+..+++|+|+++ +++++..+ +  .|.+||+....          ..... .....+.+++|+|+|++++++ ..+
T Consensus        82 ~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~~~~----------~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~  149 (331)
T 3u4y_A           82 GQSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFLKNK----------FISTI-PIPYDAVGIAISPNGNGLILIDRSS  149 (331)
T ss_dssp             CSSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETTTTE----------EEEEE-ECCTTEEEEEECTTSSCEEEEEETT
T ss_pred             CCCCccceEECCCCC-EEEEecCCCCcccEEEEECCCCC----------eEEEE-ECCCCccceEECCCCCEEEEEecCC
Confidence            777766699999987 55555544 3  89999987432          22222 234567899999999865554 556


Q ss_pred             Cc-EEEEeCCCCceE----EEEeccCCCeEEEEEccCCCEEEE-eeCCCcEEEEeCCCCce---eEEeecCCCcEEEEEE
Q 004214          402 RT-ACVWRLPDLVSV----VTFRGHKRGIWSVEFSPVDQVVIT-ASGDKTIKIWSISDGSC---LKTFEGHTSSVLRASF  472 (768)
Q Consensus       402 g~-i~i~d~~~~~~~----~~~~~~~~~v~~v~~s~~~~~l~t-~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~  472 (768)
                      +. |.+|++.....+    .........+..++|+|+|+++++ +..++.|++||+.+++.   +..+.. ...+..++|
T Consensus       150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~  228 (331)
T 3u4y_A          150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVV  228 (331)
T ss_dssp             TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEE
T ss_pred             CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEE
Confidence            88 999998764332    122234556899999999996554 45689999999999998   777774 466788999


Q ss_pred             EeCCCEEEEEe-CCCcEEEEECCCCeE--EEEeccC----CCc---EEEEEEcCCCCEEEEEe-CCCcEEEEEcCCH
Q 004214          473 LTRGAQIVSCG-ADGLVKLWTVRTGEC--IATYDKH----EDK---IWALAVGKKTEMFATGG-SDALVNLWHDSTA  538 (768)
Q Consensus       473 s~~~~~l~s~~-~dg~i~iwd~~~~~~--~~~~~~~----~~~---v~~l~~s~~~~~l~s~~-~dg~v~vw~~~~~  538 (768)
                      +|+|++|++++ .++.|.+||+.+++.  +..+..+    ...   ..+++|+|++++|++++ .++.|.+|++.+.
T Consensus       229 spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          229 SRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             CTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence            99999876655 477899999999987  4444322    222   24589999999886655 4669999998753

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=8.4e-23  Score=234.96  Aligned_cols=356  Identities=11%  Similarity=0.106  Sum_probs=238.1

Q ss_pred             EEEeecC-CC-----cEEEEECCCCEEEEEEEcCCCc------------------------EEEEEEeeCCCccEEEEEe
Q 004214            2 FALLEGA-DR-----KVLVWDVDGGFCTHYFKGHKGV------------------------VSSILFHPDTDKSLLFSGS   51 (768)
Q Consensus         2 ~latg~~-dg-----~i~vwd~~~~~~~~~l~gh~~~------------------------V~~l~~spd~~~~~l~sg~   51 (768)
                      +||+++. |+     .|.+||+.+++....+.+|...                        |.+++|||||++  |++++
T Consensus        50 ~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~--l~~~~  127 (741)
T 2ecf_A           50 RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQR--LLFPL  127 (741)
T ss_dssp             EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSE--EEEEE
T ss_pred             EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCE--EEEEe
Confidence            5777777 88     9999999999987777765433                        889999999998  77777


Q ss_pred             CCCcEEEEECCCCe--eEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccee-EeeEEecCCCC
Q 004214           52 DDATVRVWDLLAKK--CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM-VEAVCAIPPGS  128 (768)
Q Consensus        52 ~dg~I~iWd~~~~~--~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~-v~~~~~~~~~~  128 (768)
                      . +.|.+||+.++.  .+..+..|...+.+++|||||++|++++. +.|.+||+.+++.......... +.         
T Consensus       128 ~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~---------  196 (741)
T 2ecf_A          128 G-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIG---------  196 (741)
T ss_dssp             T-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEE---------
T ss_pred             C-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCcccee---------
Confidence            5 999999998883  45567778889999999999999999884 6899999998775433221110 00         


Q ss_pred             CccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEE
Q 004214          129 AFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCV  208 (768)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  208 (768)
                                                .+..                        .............+.|+|++..++.+
T Consensus       197 --------------------------~g~~------------------------~~v~~~~~~~~~~~~~SpDg~~l~~~  226 (741)
T 2ecf_A          197 --------------------------NGIA------------------------EFVADEEMDRHTGYWWAPDDSAIAYA  226 (741)
T ss_dssp             --------------------------ESCC------------------------CHHHHHHSCCCCSEEECTTSSCEEEE
T ss_pred             --------------------------cccc------------------------ceeeeeccccccceEECCCCCEEEEE
Confidence                                      0000                        00000000123456677777777776


Q ss_pred             EecC-eEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC-ceeeeeee--CCccc
Q 004214          209 TADQ-QLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-MSCSYVLA--GHSEI  284 (768)
Q Consensus       209 ~~dg-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~--~~~~~  284 (768)
                      +.++ .+..|...             ........+..+.|......     .....|.+||+.+ ++......  .|...
T Consensus       227 ~~d~~~~~~~~~~-------------~~~p~~~~~~~~~~~~~g~~-----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~  288 (741)
T 2ecf_A          227 RIDESPVPVQKRY-------------EVYADRTDVIEQRYPAAGDA-----NVQVKLGVISPAEQAQTQWIDLGKEQDIY  288 (741)
T ss_dssp             EEECTTSCEEEEE-------------EECSSCEEEEEEECCBTTSC-----CCEEEEEEECSSTTCCCEEECCCSCSSEE
T ss_pred             EEcCCCCceEecC-------------CCCCCcccceEeecCCCCCC-----CCeeEEEEEECCCCCceEEecCCCCcceE
Confidence            6543 22222200             00011112333333221110     0112678889988 77654443  47778


Q ss_pred             eEEEeeeeecCCCEEEEEEe----CCCeEEEEeCCCceEEEeeecccC----cEEEEEEecCCCcEEEEEeCCCeEEEEe
Q 004214          285 VLCLDTCALSSGKILIVTGS----KDNSVRLWDSESRCCVGVGTGHMG----AVGAVAFSKKLQNFLVSGSSDHTIKVWS  356 (768)
Q Consensus       285 v~~l~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~s~~~dg~i~iwd  356 (768)
                      +..+.  + ++++.+++++.    .++.|++||+.+++....+..+..    .+..++|+|+|+ ++++++.||.+++|.
T Consensus       289 ~~~~~--~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~  364 (741)
T 2ecf_A          289 LARVN--W-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYR  364 (741)
T ss_dssp             EEEEE--E-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEE
T ss_pred             EEEEE--e-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEE
Confidence            88887  7 88887444443    357899999999988777766553    456889999988 889999999888887


Q ss_pred             CCCCCCCCccccccceeeEeeccCCCeEEE-EEccCCCEEEEE-eCCC--cEEEEeCCC-CceEEEEeccCCCeEEEEEc
Q 004214          357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSL-AVAPNDSLVCTG-SQDR--TACVWRLPD-LVSVVTFRGHKRGIWSVEFS  431 (768)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~-~~dg--~i~i~d~~~-~~~~~~~~~~~~~v~~v~~s  431 (768)
                      ++..         .. ...+..+...+..+ .|+|+++.|+.. +.++  .+++|++.. +.....+.. ...+.+++|+
T Consensus       365 ~~~~---------~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~s  433 (741)
T 2ecf_A          365 IDSK---------GK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFA  433 (741)
T ss_dssp             ECSS---------SC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEEC
T ss_pred             EcCC---------CC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEEC
Confidence            7621         11 33445566778777 599999877654 4455  899999864 555566665 6678999999


Q ss_pred             cCCCEEEEeeCC----CcEEEEeCCC
Q 004214          432 PVDQVVITASGD----KTIKIWSISD  453 (768)
Q Consensus       432 ~~~~~l~t~~~d----~~i~iwd~~~  453 (768)
                      |+|+.|+....+    ..+.+|+...
T Consensus       434 pdg~~l~~~~~~~~~p~~~~l~~~~~  459 (741)
T 2ecf_A          434 RNASVYVDSWSNNSTPPQIELFRANG  459 (741)
T ss_dssp             TTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred             CCCCEEEEEecCCCCCCeEEEEEcCC
Confidence            999988876543    4688999754

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=1.7e-21  Score=202.51  Aligned_cols=271  Identities=13%  Similarity=0.112  Sum_probs=212.6

Q ss_pred             CceeEEEEecCCCCEEEEEeC-------CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEE
Q 004214          240 EEILDLKFLGEEEQYLAVATN-------IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW  312 (768)
Q Consensus       240 ~~i~~~~~~~~~~~~l~~~~~-------~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iw  312 (768)
                      ..+..++|++ +++.+++++.       ++.|.+||..+++....+..... +.++.  +.++++.+++++..++.|.+|
T Consensus        41 ~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~--~s~dg~~l~v~~~~~~~v~~~  116 (353)
T 3vgz_A           41 KGAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK-PFGAT--INNTTQTLWFGNTVNSAVTAI  116 (353)
T ss_dssp             SSEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC-CCSEE--EETTTTEEEEEETTTTEEEEE
T ss_pred             cCccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC-cceEE--ECCCCCEEEEEecCCCEEEEE
Confidence            3567788886 5555666553       56899999999988877765433 44554  778888767777778999999


Q ss_pred             eCCCceEEEeeecccCc---------EEEEEEecCCCcEEEEE-eCCCeEEEEeCCCCCCCCccccccceeeEeeccCCC
Q 004214          313 DSESRCCVGVGTGHMGA---------VGAVAFSKKLQNFLVSG-SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD  382 (768)
Q Consensus       313 d~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (768)
                      |..+++.+..+..+...         +.+++|+|+++.+++++ +.++.|.+||....          ........+...
T Consensus       117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~----------~~~~~~~~~~~~  186 (353)
T 3vgz_A          117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI----------KLKTAIQNTGKM  186 (353)
T ss_dssp             ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT----------EEEEEECCCCTT
T ss_pred             eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC----------ceEEEecCCCCc
Confidence            99999988877765432         78899999988555554 35889999998743          233333335556


Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec----cCCCeEEEEEccCCCEEEEeeC-CCcEEEEeCCCCcee
Q 004214          383 INSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG----HKRGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCL  457 (768)
Q Consensus       383 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~v~~s~~~~~l~t~~~-d~~i~iwd~~~~~~~  457 (768)
                      +.+++|+|+++.+++++.++.|.+||+.+++....+..    +...+.+++|+|+++.+++++. ++.|.+||+.+++.+
T Consensus       187 ~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  266 (353)
T 3vgz_A          187 STGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL  266 (353)
T ss_dssp             CCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             cceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence            88999999999999999999999999999998887764    4556888999999997776665 599999999999998


Q ss_pred             EEeecCCCcEEEEEEEeCCCEEEEEe-CCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 004214          458 KTFEGHTSSVLRASFLTRGAQIVSCG-ADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD  527 (768)
Q Consensus       458 ~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d  527 (768)
                      ..+..+..  ..++|+|+|+++++++ .++.|.+||..+++.+..+.. ...+.+++|+|+|++|+++..+
T Consensus       267 ~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          267 AKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT-PTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC-CSEEEEEEECTTSCEEEEEEEC
T ss_pred             EEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec-CCCCCeEEEcCCCCEEEEEEcc
Confidence            88875442  5699999999776665 689999999999999988874 4578999999999977766655

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=6.8e-22  Score=203.99  Aligned_cols=297  Identities=13%  Similarity=0.013  Sum_probs=194.1

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCC-C-cEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecC-c----c
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHK-G-VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK-H----F   74 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~-~-~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~-h----~   74 (768)
                      ++++++.++.|.+||..+++.+..+.... . .+.+++|+|+|+. ++++++.++.|.+||+.+++.+..+.. +    .
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCE-EEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            68899999999999999999888887332 2 5889999999875 345667789999999999998877753 2    2


Q ss_pred             ceeEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhh
Q 004214           75 SRVTSMAITSDGSTLISAG------------RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI  142 (768)
Q Consensus        75 ~~V~~l~fs~d~~~L~s~~------------~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  142 (768)
                      ..+.+++|+|+|++|++++            .++.|.+||+.+++....+.....                         
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-------------------------  136 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ-------------------------  136 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-------------------------
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC-------------------------
Confidence            3688999999999999886            568888888877654433322111                         


Q ss_pred             hcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccC
Q 004214          143 KKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV  222 (768)
Q Consensus       143 ~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~  222 (768)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (337)
T 1pby_B          137 --------------------------------------------------------------------------------  136 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCc--cceEEEeeeeecCCCEEE
Q 004214          223 PEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS--EIVLCLDTCALSSGKILI  300 (768)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~v~~l~~~~~~~~~~~l  300 (768)
                                         +..++|++ ++++++++  ++.|.+||+.+++....+..+.  .++   .  +.+++.. +
T Consensus       137 -------------------~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~---~--~s~dg~~-l  188 (337)
T 1pby_B          137 -------------------ITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAET---Y--AQPDVLA-V  188 (337)
T ss_dssp             -------------------CCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTT---B--CCCBCCC-C
T ss_pred             -------------------cceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCc---e--eCCCccE-E
Confidence                               12233332 33334444  3566777766666554443322  111   1  2333332 1


Q ss_pred             EEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccC
Q 004214          301 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG  380 (768)
Q Consensus       301 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  380 (768)
                      +..         ....+....        +........+.....  .....|.+||+.....        . ......+.
T Consensus       189 ~~~---------~~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~v~~~d~~~~~~--------~-~~~~~~~~  240 (337)
T 1pby_B          189 WNQ---------HESSGVMAT--------PFYTARKDIDPADPT--AYRTGLLTMDLETGEM--------A-MREVRIMD  240 (337)
T ss_dssp             CCC---------CTTTTEEEE--------EEEEEBTTSCTTSGG--GEEEEEEEEETTTCCE--------E-EEEEEECS
T ss_pred             eee---------ccCCCceee--------eeecccccccccccc--ccccceEEEeCCCCCc--------e-EeecCCCC
Confidence            110         000000000        000000000000000  0011678999875421        1 22334566


Q ss_pred             CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214          381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF  460 (768)
Q Consensus       381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~  460 (768)
                      ..+.+++|+|++++++++  ++.|.+||+.+++.+..+.. ...+.+++|+|+|++|++++.++.|++||+.+++.+..+
T Consensus       241 ~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~  317 (337)
T 1pby_B          241 VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             CceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEE
Confidence            778899999999999988  79999999999988887764 356789999999999999999999999999999988888


Q ss_pred             ecC
Q 004214          461 EGH  463 (768)
Q Consensus       461 ~~~  463 (768)
                      ..+
T Consensus       318 ~~~  320 (337)
T 1pby_B          318 DLP  320 (337)
T ss_dssp             ECG
T ss_pred             EcC
Confidence            754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=9.1e-22  Score=224.94  Aligned_cols=336  Identities=12%  Similarity=0.040  Sum_probs=210.7

Q ss_pred             EEeecCCCcEEEEECCCCEEE-EEEEcCC-----------------CcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCC
Q 004214            3 ALLEGADRKVLVWDVDGGFCT-HYFKGHK-----------------GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK   64 (768)
Q Consensus         3 latg~~dg~i~vwd~~~~~~~-~~l~gh~-----------------~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~   64 (768)
                      +++++.++ | +||+.+|+.+ ..+..|.                 ..|.+++|||| ..  ++.+ .++.|++||+.++
T Consensus        38 ~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~--~~~~-~~~~i~~~d~~~~  111 (706)
T 2z3z_A           38 YVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GL--VVLF-TQGGLVGFDMLAR  111 (706)
T ss_dssp             EEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TE--EEEE-ETTEEEEEETTTT
T ss_pred             EEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-Ce--EEEE-ECCEEEEEECCCC
Confidence            34555667 8 9999999874 5555554                 56999999999 54  4333 3599999999988


Q ss_pred             eeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCC-----Ceeeeeeeccee---------------EeeEEec
Q 004214           65 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD-----YSCKLTVPTYEM---------------VEAVCAI  124 (768)
Q Consensus        65 ~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~-----~~~~~~~~~~~~---------------v~~~~~~  124 (768)
                      +... +..+...+.+++|||||++|+++ .++.|++||+.+     ++..........               +..+.|+
T Consensus       112 ~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S  189 (706)
T 2z3z_A          112 KVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWS  189 (706)
T ss_dssp             EEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEEC
T ss_pred             ceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEEC
Confidence            7654 44467789999999999999985 679999999998     776554333222               4778899


Q ss_pred             CCCCCccccccccchhhhhcccCCcceEEEEeeCC-cE---EEEEEcCCceeeeecCCceeecccccCcccceeEEEEcc
Q 004214          125 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER-GI---VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLP  200 (768)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (768)
                      |++.                       .++.++.+ ..   +.+.+....                   ........+..
T Consensus       190 pDg~-----------------------~la~~~~d~~~~~~~~~~~~~~~-------------------~~~~~~~~y~~  227 (706)
T 2z3z_A          190 PKGS-----------------------CLAFYRMDQSMVKPTPIVDYHPL-------------------EAESKPLYYPM  227 (706)
T ss_dssp             TTSS-----------------------EEEEEEEECTTSCCEEEEECCSS-------------------SCEEEEECCCB
T ss_pred             CCCC-----------------------EEEEEEECCCCCceEEeeccCCC-------------------CCceEEeeCCC
Confidence            9887                       33333311 11   111111100                   00000000000


Q ss_pred             CCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC-----cEEEEECCCc-ee
Q 004214          201 SNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE-----QVQVYDLSSM-SC  274 (768)
Q Consensus       201 ~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-----~i~i~d~~~~-~~  274 (768)
                      .+.    ...+..+.+|++.....     ........+...+..++|++ +++.+++++.++     .|.+||+.++ ..
T Consensus       228 ~g~----~~~~~~l~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~  297 (706)
T 2z3z_A          228 AGT----PSHHVTVGIYHLATGKT-----VYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFV  297 (706)
T ss_dssp             TTS----CCCEEEEEEEETTTTEE-----EECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEE
T ss_pred             CCC----CCCeeEEEEEECCCCce-----EeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCcee
Confidence            010    11235677777654321     11111124556788899985 667777766554     8999999998 43


Q ss_pred             eeeeeC-Ccc---ceEEEeeeeec--CCCEEEEEEeCCCeEEEEeCC-CceEEEeeecccCcEEE-EEEecCCCcEEEEE
Q 004214          275 SYVLAG-HSE---IVLCLDTCALS--SGKILIVTGSKDNSVRLWDSE-SRCCVGVGTGHMGAVGA-VAFSKKLQNFLVSG  346 (768)
Q Consensus       275 ~~~~~~-~~~---~v~~l~~~~~~--~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~  346 (768)
                      ...... +..   .+.++.  +++  +++ ++++++.+|.+++|.+. ++..+..+..+...+.. ++|+|+++.+++++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~--~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~  374 (706)
T 2z3z_A          298 RTLFVETDKHYVEPLHPLT--FLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFES  374 (706)
T ss_dssp             EEEEEEECSSCCCCCSCCE--ECTTCSSE-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEE
T ss_pred             eEEEEccCCCeECccCCce--eecCCCCE-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEe
Confidence            333322 221   123443  666  555 58889999999999876 56677777778888877 79999988666666


Q ss_pred             eCCC----eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC----CcEEEEeCCCCc
Q 004214          347 SSDH----TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD----RTACVWRLPDLV  413 (768)
Q Consensus       347 ~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~  413 (768)
                      +.++    .|..||+..+.           . ....+...+.+++|+|+|++++.+..+    +.|++||+.+++
T Consensus       375 ~~~~~~~~~l~~~d~~~~~-----------~-~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          375 TEASPLERHFYCIDIKGGK-----------T-KDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             SSSCTTCBEEEEEETTCCC-----------C-EESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             cCCCCceEEEEEEEcCCCC-----------c-eeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            6665    56666665321           1 112256678999999999988877544    459999998876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=3e-21  Score=199.64  Aligned_cols=294  Identities=11%  Similarity=0.131  Sum_probs=189.1

Q ss_pred             EEEeecCCCcEEEEECC-CC--EEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCC-CcEEEEECC--CCe--eEEEecCc
Q 004214            2 FALLEGADRKVLVWDVD-GG--FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD-ATVRVWDLL--AKK--CVATLDKH   73 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~-~~--~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~d-g~I~iWd~~--~~~--~~~~l~~h   73 (768)
                      ++++++.|+.|.+||+. ++  ..+.. ..|...+.+++|+|+|++  |++++.+ +.|.+|++.  +++  .+..+..+
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~--l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   83 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRY--LYVGVRPEFRVLAYRIAPDDGALTFAAESALP   83 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSE--EEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCE--EEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence            45556889999999995 44  33333 458889999999999987  7777765 999999997  554  44555544


Q ss_pred             cceeEEEEEcCCCCEEEEEeC-CCeEEEEECCCC---eeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCc
Q 004214           74 FSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDY---SCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL  149 (768)
Q Consensus        74 ~~~V~~l~fs~d~~~L~s~~~-dg~i~vWd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (768)
                      . .+..++|+|+|++|++++. ++.|.+||+.++   +....+....                                 
T Consensus        84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---------------------------------  129 (343)
T 1ri6_A           84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD---------------------------------  129 (343)
T ss_dssp             S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT---------------------------------
T ss_pred             C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC---------------------------------
Confidence            4 7899999999998877765 788999998422   2221111111                                 


Q ss_pred             ceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceee
Q 004214          150 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMEL  229 (768)
Q Consensus       150 ~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~  229 (768)
                                                                                                      
T Consensus       130 --------------------------------------------------------------------------------  129 (343)
T 1ri6_A          130 --------------------------------------------------------------------------------  129 (343)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEeeecccCCceeEEEEecCCCCEEEEEe-CCCcEEEEECCC-ceeee----eeeC-CccceEEEeeeeecCCCEEEEE
Q 004214          230 ILSKRLVGYNEEILDLKFLGEEEQYLAVAT-NIEQVQVYDLSS-MSCSY----VLAG-HSEIVLCLDTCALSSGKILIVT  302 (768)
Q Consensus       230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~~~~i~i~d~~~-~~~~~----~~~~-~~~~v~~l~~~~~~~~~~~l~~  302 (768)
                                 .+.+++|++ +++++++++ .++.|.+||+.+ +....    .+.. ....+.++.  +.+++..++++
T Consensus       130 -----------~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pdg~~l~~~  195 (343)
T 1ri6_A          130 -----------GCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMV--FHPNEQYAYCV  195 (343)
T ss_dssp             -----------TBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEE--ECTTSSEEEEE
T ss_pred             -----------CceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEE--ECCCCCEEEEE
Confidence                       233344443 333333333 556666666655 33221    1121 223555665  77888875666


Q ss_pred             EeCCCeEEEEeCCC--ceE--EEeee----cc--cCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccce
Q 004214          303 GSKDNSVRLWDSES--RCC--VGVGT----GH--MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKA  372 (768)
Q Consensus       303 ~~~dg~i~iwd~~~--~~~--~~~~~----~~--~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  372 (768)
                      +..++.|.+|++..  +..  .....    ++  ...+..++|+|+++.+++++..++.|.+|++.....      ....
T Consensus       196 ~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~------~~~~  269 (343)
T 1ri6_A          196 NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS------VLSK  269 (343)
T ss_dssp             ETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC------CEEE
T ss_pred             eCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC------ceEE
Confidence            66899999999953  332  22222    11  235678999999886556777899999999973210      1122


Q ss_pred             eeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeC--CCCc--eEEEEeccCCCeEEEEEccCC
Q 004214          373 KAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRL--PDLV--SVVTFRGHKRGIWSVEFSPVD  434 (768)
Q Consensus       373 ~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~--~~~~--~~~~~~~~~~~v~~v~~s~~~  434 (768)
                      ......+. .+.+++|+|+|++|++++ .++.|.+|++  .+++  .+..+.. .....+++|.|+.
T Consensus       270 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~  334 (343)
T 1ri6_A          270 EGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHE  334 (343)
T ss_dssp             EEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC
T ss_pred             eeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEccc
Confidence            22333333 388999999999888887 5799999954  4553  3344443 2456677777754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=7.2e-22  Score=203.79  Aligned_cols=267  Identities=12%  Similarity=0.071  Sum_probs=206.4

Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeeCCcc--ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec-c---
Q 004214          253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSE--IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-H---  326 (768)
Q Consensus       253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~---  326 (768)
                      +++++++.++.|.+||..+++....+.....  .+.++.  +.++++.+++++..++.|.+||+.+++.+..+.. +   
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~--~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~   79 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPM--VAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEE--ECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceE--EcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence            4788899999999999999988877764331  355665  7788877677778889999999999988776553 2   


Q ss_pred             -cCcEEEEEEecCCCcEEEEEe------------CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC
Q 004214          327 -MGAVGAVAFSKKLQNFLVSGS------------SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS  393 (768)
Q Consensus       327 -~~~v~~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  393 (768)
                       ...+..++|+|+++ ++++++            .++.|.+||+....          ...... ....+.+++|+|+++
T Consensus        80 ~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~-~~~~~~~~~~s~dg~  147 (337)
T 1pby_B           80 RVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLS----------RRKAFE-APRQITMLAWARDGS  147 (337)
T ss_dssp             EEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTE----------EEEEEE-CCSSCCCEEECTTSS
T ss_pred             ccccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCCc----------EEEEEe-CCCCcceeEECCCCC
Confidence             22567899999987 455554            57999999987431          222222 245678899999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCC------------------------cEEEE
Q 004214          394 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK------------------------TIKIW  449 (768)
Q Consensus       394 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~------------------------~i~iw  449 (768)
                      +++++  ++.|.+||+.+++....+..+... ..+.|+|++..++.++..+                        .|.+|
T Consensus       148 ~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  224 (337)
T 1pby_B          148 KLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM  224 (337)
T ss_dssp             CEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred             EEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEE
Confidence            88888  689999999999888777654411 1237899988766554332                        46899


Q ss_pred             eCCCCcee-EEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214          450 SISDGSCL-KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA  528 (768)
Q Consensus       450 d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg  528 (768)
                      |+.+++.. ..+..+...+..++|+|+|++++++  ++.|.+||+.+++.+..+.. ...+.+++|+|+|++|++++.++
T Consensus       225 d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~  301 (337)
T 1pby_B          225 DLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALG  301 (337)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSS
T ss_pred             eCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCC
Confidence            99998774 3344566788899999999999988  69999999999999888863 45678999999999999999999


Q ss_pred             cEEEEEcCCHH
Q 004214          529 LVNLWHDSTAA  539 (768)
Q Consensus       529 ~v~vw~~~~~~  539 (768)
                      .|.+|+..+++
T Consensus       302 ~i~v~d~~~~~  312 (337)
T 1pby_B          302 DLAAYDAETLE  312 (337)
T ss_dssp             EEEEEETTTCC
T ss_pred             cEEEEECcCCc
Confidence            99999987653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=1.8e-22  Score=204.07  Aligned_cols=255  Identities=11%  Similarity=0.090  Sum_probs=197.6

Q ss_pred             EeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-ceEEEeeecc-cCcEEEEEE
Q 004214          258 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGH-MGAVGAVAF  335 (768)
Q Consensus       258 ~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~-~~~v~~~~~  335 (768)
                      ++.++.|++||+.+++.. .+..|...+.++.  +.+++.. +++++ ++.|++||+.+ ++.......+ ...+.+++|
T Consensus        18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~--~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~   92 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPN--WSPDGKY-LLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI   92 (297)
T ss_dssp             CCCCEEEEEEETTTTEEE-EEEEESSCCEEEE--ECTTSSE-EEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred             CCcceeEEEEeCCCCcee-eeccCCcceEeeE--ECCCCCE-EEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence            346789999999998876 4556888899997  7787776 66665 88999999999 8877776666 467889999


Q ss_pred             ecCCCcEEEEEe--CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE-EEeCCCcEEEEeCCC-
Q 004214          336 SKKLQNFLVSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC-TGSQDRTACVWRLPD-  411 (768)
Q Consensus       336 ~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~i~d~~~-  411 (768)
                      +|+++ ++++++  .++...+|.++....         ..... .+...+..++|+|+++.|+ ++..++.+.+|++.. 
T Consensus        93 spdg~-~l~~~~~~~~~~~~l~~~~~~~~---------~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~  161 (297)
T 2ojh_A           93 SPDGA-LYAISDKVEFGKSAIYLLPSTGG---------TPRLM-TKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID  161 (297)
T ss_dssp             CTTSS-EEEEEECTTTSSCEEEEEETTCC---------CCEEC-CSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             CCCCC-EEEEEEeCCCCcceEEEEECCCC---------ceEEe-ecCCCccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence            99977 677777  335566665532110         11111 2233488999999999887 777899999998632 


Q ss_pred             CceEEEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCC-CCceeEEeecCCCcEEEEEEEeCCCEEEEEeCC----
Q 004214          412 LVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSIS-DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD----  485 (768)
Q Consensus       412 ~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----  485 (768)
                      ......+..+...+.+++|+|+++.|++++ .++.+++|++. .+..+..+..|...+..+.|+|+|++|++++.+    
T Consensus       162 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  241 (297)
T 2ojh_A          162 SGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVF  241 (297)
T ss_dssp             TCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred             CCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCC
Confidence            234456667888999999999999887766 58999999986 567778888888899999999999999888876    


Q ss_pred             -------CcEEEEECCCCeE--EEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214          486 -------GLVKLWTVRTGEC--IATYDKHEDKIWALAVGKKTEMFATGGSDA  528 (768)
Q Consensus       486 -------g~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg  528 (768)
                             +.|++||+.+++.  +..+.+|...+.+++|+|++++|++++.+.
T Consensus       242 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          242 DHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             SCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             cccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence                   5699999998865  444557888999999999999999887654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=4.2e-21  Score=197.55  Aligned_cols=276  Identities=11%  Similarity=0.090  Sum_probs=197.8

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCee-EEEecCccceeEEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC-VATLDKHFSRVTSM   80 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~-~~~l~~h~~~V~~l   80 (768)
                      ++++++.++.|.+||..+++.+..+..+...+ +++|+|+|++ +++++..++.|.+||+.+++. ...+..+..+..++
T Consensus        12 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~   89 (331)
T 3u4y_A           12 GIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSN-VVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADV   89 (331)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCE-EEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCE
T ss_pred             EEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCE-EEEEeCCCCeEEEEECCCCceeEEecccCCCCccce
Confidence            46788899999999999999988888777777 9999999985 344445588999999999988 77777777766669


Q ss_pred             EEcCCCCEEEEEeCCC---eEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEee
Q 004214           81 AITSDGSTLISAGRDK---VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG  157 (768)
Q Consensus        81 ~fs~d~~~L~s~~~dg---~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (768)
                      +|+|+|++|+++..++   .|.+||+.+++.+..++....+..++++|++..                      .+++..
T Consensus        90 ~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~----------------------l~~~~~  147 (331)
T 3u4y_A           90 DITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNG----------------------LILIDR  147 (331)
T ss_dssp             EECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSC----------------------EEEEEE
T ss_pred             EECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCE----------------------EEEEec
Confidence            9999999999555553   899999999998888777666677777777652                      233334


Q ss_pred             CCcE-EEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeec
Q 004214          158 ERGI-VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV  236 (768)
Q Consensus       158 ~~g~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~  236 (768)
                      .++. +.+|++.......                                                     ...  ....
T Consensus       148 ~~~~~i~~~~~~~~g~~~-----------------------------------------------------~~~--~~~~  172 (331)
T 3u4y_A          148 SSANTVRRFKIDADGVLF-----------------------------------------------------DTG--QEFI  172 (331)
T ss_dssp             TTTTEEEEEEECTTCCEE-----------------------------------------------------EEE--EEEE
T ss_pred             CCCceEEEEEECCCCcEe-----------------------------------------------------ecC--Cccc
Confidence            4455 7777765331000                                                     000  0111


Q ss_pred             ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee---eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214          237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC---SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD  313 (768)
Q Consensus       237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd  313 (768)
                      .....+..++|+++...+++++..++.|.+||+.+++.   +..+..+ ..+.++.  +.++++.++++...++.|.+||
T Consensus       173 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~--~spdg~~l~v~~~~~~~i~~~d  249 (331)
T 3u4y_A          173 SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIV--VSRDGSTVYVLTESTVDVFNFN  249 (331)
T ss_dssp             CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEE--ECTTSSEEEEECSSEEEEEEEE
T ss_pred             cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEE--ECCCCCEEEEEEcCCCEEEEEE
Confidence            22334677888764433555555689999999998887   6666654 4445565  7788887566666788999999


Q ss_pred             CCCceE--EEeeecc----cC---cEEEEEEecCCCcEEEEEeCCCeEEEEeCCC
Q 004214          314 SESRCC--VGVGTGH----MG---AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG  359 (768)
Q Consensus       314 ~~~~~~--~~~~~~~----~~---~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  359 (768)
                      ..+++.  +..+..+    ..   ....++|+|+++.+++++..++.|.+||+..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          250 QLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             TTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred             CCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence            999877  3333222    22   2356899999886566667788999999874

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=4.9e-21  Score=198.07  Aligned_cols=297  Identities=12%  Similarity=0.141  Sum_probs=194.8

Q ss_pred             EEEEEeCCCcEEEEECC-CC--eeEEEecCccceeEEEEEcCCCCEEEEEeCC-CeEEEEECC--CCeeeeeeecceeEe
Q 004214           46 LLFSGSDDATVRVWDLL-AK--KCVATLDKHFSRVTSMAITSDGSTLISAGRD-KVVNLWDLR--DYSCKLTVPTYEMVE  119 (768)
Q Consensus        46 ~l~sg~~dg~I~iWd~~-~~--~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~d-g~i~vWd~~--~~~~~~~~~~~~~v~  119 (768)
                      ++++++.|+.|++||+. ++  +.+..+ .|...+.+++|+|+|++|++++.+ +.|.+|++.  +++....        
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~--------   77 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA--------   77 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE--------
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec--------
Confidence            45666889999999995 34  334443 477789999999999999998886 899999986  3221100        


Q ss_pred             eEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEc
Q 004214          120 AVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVL  199 (768)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (768)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (343)
T 1ri6_A           78 --------------------------------------------------------------------------------   77 (343)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEE-eCCCcEEEEECC---Cceee
Q 004214          200 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA-TNIEQVQVYDLS---SMSCS  275 (768)
Q Consensus       200 ~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~~~~i~i~d~~---~~~~~  275 (768)
                                                       ..... ...+..++|++ ++++++++ ..++.|.+||+.   .....
T Consensus        78 ---------------------------------~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~  122 (343)
T 1ri6_A           78 ---------------------------------AESAL-PGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVV  122 (343)
T ss_dssp             ---------------------------------EEEEC-SSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred             ---------------------------------ccccc-CCCCcEEEEcC-CCCEEEEEecCCCeEEEEECCCCcccccc
Confidence                                             00000 11345666664 44555444 457889999983   34444


Q ss_pred             eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-ceEEE----eeec-ccCcEEEEEEecCCCcEEEEEeCC
Q 004214          276 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVG----VGTG-HMGAVGAVAFSKKLQNFLVSGSSD  349 (768)
Q Consensus       276 ~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~----~~~~-~~~~v~~~~~~~~~~~~l~s~~~d  349 (768)
                      ..+..+. .+.++.  +.++++.+++++..++.|.+||+.+ ++...    .... ....+..++|+|+++.+++++..+
T Consensus       123 ~~~~~~~-~~~~~~--~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~  199 (343)
T 1ri6_A          123 DVVEGLD-GCHSAN--ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN  199 (343)
T ss_dssp             EEECCCT-TBCCCE--ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             ccccCCC-CceEEE--ECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCC
Confidence            4444443 466665  7777777444444899999999987 65432    2222 345788999999987555666689


Q ss_pred             CeEEEEeCCCCCCCCccccccceeeEee----c--cCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCC----CCceEEEE
Q 004214          350 HTIKVWSFDGLSDDAEQPMNLKAKAVVA----A--HGKDINSLAVAPNDSLVCTGS-QDRTACVWRLP----DLVSVVTF  418 (768)
Q Consensus       350 g~i~iwd~~~~~~~~~~~~~~~~~~~~~----~--~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~----~~~~~~~~  418 (768)
                      +.|.+|++.....      .........    .  ....+.+++|+|++++|+++. .++.|.+||+.    +.+.+..+
T Consensus       200 ~~i~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~  273 (343)
T 1ri6_A          200 SSVDVWELKDPHG------NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ  273 (343)
T ss_dssp             TEEEEEESSCTTS------CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred             CEEEEEEecCCCC------cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee
Confidence            9999999964211      011111111    1  123567899999998887554 78999999998    33455555


Q ss_pred             eccCCCeEEEEEccCCCEEEEee-CCCcEEEEe--CCCCc--eeEEeecCCCcEEEEEEEeCCC
Q 004214          419 RGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWS--ISDGS--CLKTFEGHTSSVLRASFLTRGA  477 (768)
Q Consensus       419 ~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd--~~~~~--~~~~~~~~~~~v~~~~~s~~~~  477 (768)
                      ..+.. +.+++|+|++++|++++ .++.|.+|+  ..+++  .+..+... ....+++|.++.+
T Consensus       274 ~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~~  335 (343)
T 1ri6_A          274 PTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHEG  335 (343)
T ss_dssp             ECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC-
T ss_pred             cCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcccC
Confidence            55544 88999999999888887 689999995  44554  34444432 3455677777643

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=1.9e-21  Score=223.11  Aligned_cols=369  Identities=13%  Similarity=0.106  Sum_probs=237.3

Q ss_pred             EEeecCCCcEEEEECCCCEEEEEEEcCCC---cEEEEEEeeCCCccEEEEEeCC---------CcEEEEECCCCeeEEEe
Q 004214            3 ALLEGADRKVLVWDVDGGFCTHYFKGHKG---VVSSILFHPDTDKSLLFSGSDD---------ATVRVWDLLAKKCVATL   70 (768)
Q Consensus         3 latg~~dg~i~vwd~~~~~~~~~l~gh~~---~V~~l~~spd~~~~~l~sg~~d---------g~I~iWd~~~~~~~~~l   70 (768)
                      +++ +.||+|++||+.++++...+.+|..   .|.+++|||||++  |++++.+         +.|.+||+.+++. ..+
T Consensus        31 ~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~--l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l  106 (723)
T 1xfd_A           31 IYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREY--ALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSL  106 (723)
T ss_dssp             CCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSE--EEEEESCCCCSSSCCCSEEEEEESSSCCC-EEC
T ss_pred             EEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCE--EEEEecCccceeecceeeEEEEECCCCce-Eec
Confidence            444 6899999999999998888888776   4999999999998  8887764         7888999998876 334


Q ss_pred             c---CccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccC
Q 004214           71 D---KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRR  147 (768)
Q Consensus        71 ~---~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (768)
                      .   +|...+..++|||||++|++++. +.|++||+.+++..........          .                   
T Consensus       107 ~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~----------~-------------------  156 (723)
T 1xfd_A          107 DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKE----------G-------------------  156 (723)
T ss_dssp             CCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBT----------T-------------------
T ss_pred             cCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCC----------C-------------------
Confidence            3   45556899999999999999886 7899999988765433221000          0                   


Q ss_pred             CcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEec-CeEEEEeeccCcccc
Q 004214          148 SLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD-QQLLLYTTVEVPEKK  226 (768)
Q Consensus       148 ~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~~~~~~~~~~~~  226 (768)
                          .+..+-.+     |      +.            ..........+.|+|++..++.++.+ +.+.+|.+.....  
T Consensus       157 ----~~~~g~~~-----~------v~------------~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~--  207 (723)
T 1xfd_A          157 ----VIYNGLSD-----W------LY------------EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG--  207 (723)
T ss_dssp             ----TEEEEECC-----H------HH------------HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS--
T ss_pred             ----ceECcccc-----e------eE------------EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC--
Confidence                00000000     0      00            00001233677889999988877755 4566666542211  


Q ss_pred             eeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCC------ccceEEEeeeeecCCCEEE
Q 004214          227 MELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH------SEIVLCLDTCALSSGKILI  300 (768)
Q Consensus       227 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~------~~~v~~l~~~~~~~~~~~l  300 (768)
                                .....+..+.|.+....     ..+..|++||+.+++....+..+      ...+..+.  ++++++. +
T Consensus       208 ----------~~~~~~~~~~~~~~G~~-----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~--~SpDg~~-l  269 (723)
T 1xfd_A          208 ----------SIYPTVKPYHYPKAGSE-----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVK--WATSTKV-A  269 (723)
T ss_dssp             ----------SSSCCCEEEECCBTTSC-----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEE--ESSSSEE-E
T ss_pred             ----------cCCCcceeccCCCCCCC-----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEE--EeCCCeE-E
Confidence                      12234566666543321     22358999999998865566554      56777776  7777765 5


Q ss_pred             EEEeC----CCeEEEEeCCCceEEEeeec-ccCcE----EEEEEecCCCcEEEE-EeCCC------eEEEEeC-CCCCCC
Q 004214          301 VTGSK----DNSVRLWDSESRCCVGVGTG-HMGAV----GAVAFSKKLQNFLVS-GSSDH------TIKVWSF-DGLSDD  363 (768)
Q Consensus       301 ~~~~~----dg~i~iwd~~~~~~~~~~~~-~~~~v----~~~~~~~~~~~~l~s-~~~dg------~i~iwd~-~~~~~~  363 (768)
                      ++...    +..|++||+.++++...+.. +...+    ..++|+|+|+.+++. +..++      .|.+||+ ......
T Consensus       270 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  349 (723)
T 1xfd_A          270 VTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND  349 (723)
T ss_dssp             EEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC
T ss_pred             EEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc
Confidence            55532    35799999999887766544 33333    378999999876665 56777      4566662 322100


Q ss_pred             CccccccceeeEeeccCCCeEE-EEEccCCCEEEEEeCC---CcEEEEeCCCCc--eEEEEec---cCCCeEEEEEccCC
Q 004214          364 AEQPMNLKAKAVVAAHGKDINS-LAVAPNDSLVCTGSQD---RTACVWRLPDLV--SVVTFRG---HKRGIWSVEFSPVD  434 (768)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~d---g~i~i~d~~~~~--~~~~~~~---~~~~v~~v~~s~~~  434 (768)
                              ....+..+...+.. ++|+|+|+.|+..+.+   +.+++|++....  ....+..   |...+..++|+|+|
T Consensus       350 --------~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg  421 (723)
T 1xfd_A          350 --------NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSM  421 (723)
T ss_dssp             --------CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTS
T ss_pred             --------ceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCC
Confidence                    01111122334444 6999999999876655   789999986432  2333443   56778999999999


Q ss_pred             CEEEEeeCCC---cEEEEeCCCCceeEEe
Q 004214          435 QVVITASGDK---TIKIWSISDGSCLKTF  460 (768)
Q Consensus       435 ~~l~t~~~d~---~i~iwd~~~~~~~~~~  460 (768)
                      ++++.....-   ...+++..++..+..+
T Consensus       422 ~~l~~~~~~~~~p~~~~~~~~~~~~~~~~  450 (723)
T 1xfd_A          422 DFFLLKCEGPGVPMVTVHNTTDKKKMFDL  450 (723)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred             CEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence            9888754422   3445666555554444

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=3.2e-20  Score=192.82  Aligned_cols=217  Identities=9%  Similarity=0.001  Sum_probs=163.4

Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeeCCcc---------ceEEEeeeeecCCCEEEEEE-eCCCeEEEEeCCCceEEEee
Q 004214          254 YLAVATNIEQVQVYDLSSMSCSYVLAGHSE---------IVLCLDTCALSSGKILIVTG-SKDNSVRLWDSESRCCVGVG  323 (768)
Q Consensus       254 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~---------~v~~l~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~  323 (768)
                      .+++...++.|.+||..+++....+..+..         .+.++.  +.++++.+++++ +.++.|.+||..+++....+
T Consensus       103 l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~  180 (353)
T 3vgz_A          103 LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELV--ADDATNTVYISGIGKESVIWVVDGGNIKLKTAI  180 (353)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEE--EETTTTEEEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             EEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEE--ECCCCCEEEEEecCCCceEEEEcCCCCceEEEe
Confidence            333444456777777777766665554332         145665  778888755555 35889999999999998888


Q ss_pred             ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee----ccCCCeEEEEEccCCCEEEEEe
Q 004214          324 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA----AHGKDINSLAVAPNDSLVCTGS  399 (768)
Q Consensus       324 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~  399 (768)
                      ..+...+.+++|+|+++ .+++++.++.|.+||.....          ......    .+...+.+++|+|+++.+++++
T Consensus       181 ~~~~~~~~~~~~s~dg~-~l~~~~~~~~i~~~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  249 (353)
T 3vgz_A          181 QNTGKMSTGLALDSEGK-RLYTTNADGELITIDTADNK----------ILSRKKLLDDGKEHFFINISLDTARQRAFITD  249 (353)
T ss_dssp             CCCCTTCCCCEEETTTT-EEEEECTTSEEEEEETTTTE----------EEEEEECCCSSSCCCEEEEEEETTTTEEEEEE
T ss_pred             cCCCCccceEEECCCCC-EEEEEcCCCeEEEEECCCCe----------EEEEEEcCCCCCCcccceEEECCCCCEEEEEe
Confidence            76666788999999977 67888889999999987542          222222    2455678899999999777766


Q ss_pred             C-CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCC
Q 004214          400 Q-DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA  477 (768)
Q Consensus       400 ~-dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  477 (768)
                      . ++.|.+||+.+++.+..+....  ...++|+|+++.+++++ .++.|.+||+.+++.+..+..+ ..+..++|+|+|+
T Consensus       250 ~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~  326 (353)
T 3vgz_A          250 SKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGK  326 (353)
T ss_dssp             SSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSC
T ss_pred             CCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCC
Confidence            5 4899999999999888777543  26799999999665555 6899999999999998888754 4778999999999


Q ss_pred             EEEEEeCCC
Q 004214          478 QIVSCGADG  486 (768)
Q Consensus       478 ~l~s~~~dg  486 (768)
                      +|+++..++
T Consensus       327 ~l~v~~~~~  335 (353)
T 3vgz_A          327 TLYVSVKQK  335 (353)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEccc
Confidence            887777654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=1.4e-21  Score=197.31  Aligned_cols=256  Identities=11%  Similarity=0.030  Sum_probs=188.7

Q ss_pred             eecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCC-CeeEEEecCc-cceeEEEEE
Q 004214            5 LEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-KKCVATLDKH-FSRVTSMAI   82 (768)
Q Consensus         5 tg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~-~~~~~~l~~h-~~~V~~l~f   82 (768)
                      .++.|+.|.+||+.+++.. .+..|...|.+++|+|+|++  |++++ ++.|.+||+.+ ++....+.+| ...|.+++|
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~--l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~   92 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKY--LLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI   92 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSE--EEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCE--EEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence            3567999999999999855 56679999999999999987  77776 78999999999 8877777666 368999999


Q ss_pred             cCCCCEEEEEeC--CCeEEEEEC--CCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeC
Q 004214           83 TSDGSTLISAGR--DKVVNLWDL--RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE  158 (768)
Q Consensus        83 s~d~~~L~s~~~--dg~i~vWd~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (768)
                      +|+|++|++++.  ++...+|.+  .+++.                                                  
T Consensus        93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~~--------------------------------------------------  122 (297)
T 2ojh_A           93 SPDGALYAISDKVEFGKSAIYLLPSTGGTP--------------------------------------------------  122 (297)
T ss_dssp             CTTSSEEEEEECTTTSSCEEEEEETTCCCC--------------------------------------------------
T ss_pred             CCCCCEEEEEEeCCCCcceEEEEECCCCce--------------------------------------------------
Confidence            999999999983  344444433  21110                                                  


Q ss_pred             CcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeeccc
Q 004214          159 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY  238 (768)
Q Consensus       159 ~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~  238 (768)
                                                                                                      
T Consensus       123 --------------------------------------------------------------------------------  122 (297)
T 2ojh_A          123 --------------------------------------------------------------------------------  122 (297)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC--CC
Q 004214          239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS--ES  316 (768)
Q Consensus       239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~--~~  316 (768)
                                                           ..+..+. .+.++.  +.+++..++++++.++.+++|++  .+
T Consensus       123 -------------------------------------~~~~~~~-~~~~~~--~spdg~~l~~~~~~~~~~~l~~~~~~~  162 (297)
T 2ojh_A          123 -------------------------------------RLMTKNL-PSYWHG--WSPDGKSFTYCGIRDQVFDIYSMDIDS  162 (297)
T ss_dssp             -------------------------------------EECCSSS-SEEEEE--ECTTSSEEEEEEEETTEEEEEEEETTT
T ss_pred             -------------------------------------EEeecCC-CccceE--ECCCCCEEEEEECCCCceEEEEEECCC
Confidence                                                 0000011 133333  66777775667888898899985  44


Q ss_pred             ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214          317 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC  396 (768)
Q Consensus       317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  396 (768)
                      +. ...+..+...+.+++|+|+++.+++++..++.+++|++....         .....+..|...+.+++|+|+|++|+
T Consensus       163 ~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~s~dg~~l~  232 (297)
T 2ojh_A          163 GV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG---------SSVERITDSAYGDWFPHPSPSGDKVV  232 (297)
T ss_dssp             CC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS---------SCEEECCCCSEEEEEEEECTTSSEEE
T ss_pred             Cc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC---------CCcEEEecCCcccCCeEECCCCCEEE
Confidence            43 445667888999999999987545555569999999886321         12333445667789999999999999


Q ss_pred             EEeCC-----------CcEEEEeCCCCce--EEEEeccCCCeEEEEEccCCCEEEEeeCCC
Q 004214          397 TGSQD-----------RTACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQVVITASGDK  444 (768)
Q Consensus       397 ~~~~d-----------g~i~i~d~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~  444 (768)
                      +++.+           +.|++||+.+++.  +..+.+|...+.+++|+|+++.|++++.+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          233 FVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            88876           5699999988765  444557888999999999999998887653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=8.7e-21  Score=211.29  Aligned_cols=182  Identities=10%  Similarity=0.070  Sum_probs=138.7

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC----CeEEEEeCCCCCCCCccc
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD----HTIKVWSFDGLSDDAEQP  367 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~  367 (768)
                      +.++++.++++.+.++.+.+||+.+++.......+.   .+++|+|+|+ ++++++.+    +.|++||+.++.      
T Consensus       117 ~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~-~la~~~~~~~~~~~i~~~d~~~g~------  186 (582)
T 3o4h_A          117 GVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGD-LIAGLGFFGGGRVSLFTSNLSSGG------  186 (582)
T ss_dssp             EEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETT-EEEEEEEEETTEEEEEEEETTTCC------
T ss_pred             eCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCC-EEEEEEEcCCCCeEEEEEcCCCCC------
Confidence            444554334444444455588888877655544333   7889999987 67766666    789999987542      


Q ss_pred             cccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceEEEEeccCCCeEEEE--------EccCCCEE
Q 004214          368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR--TACVWRLPDLVSVVTFRGHKRGIWSVE--------FSPVDQVV  437 (768)
Q Consensus       368 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~v~--------~s~~~~~l  437 (768)
                           ...+..|...+..++|+|||+.|+++..++  .|++||+.+++.. .+.+|...+..++        |+|||.++
T Consensus       187 -----~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~  260 (582)
T 3o4h_A          187 -----LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLA  260 (582)
T ss_dssp             -----CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEE
T ss_pred             -----ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEE
Confidence                 223456777889999999999999888888  8999999998887 7777877777777        99999999


Q ss_pred             EEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCC---cEEEEECCC
Q 004214          438 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG---LVKLWTVRT  495 (768)
Q Consensus       438 ~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~  495 (768)
                      ++++.|+++++|++  |++..   .+.+.+.+++|+ +++++++++.+.   .+.+||..+
T Consensus       261 ~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          261 VVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             EEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             EEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence            99999999999999  76655   345778999999 999998888775   477777653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=1.5e-20  Score=215.35  Aligned_cols=187  Identities=9%  Similarity=-0.009  Sum_probs=121.8

Q ss_pred             eEEEEeCCCceEE---E-----eeecccCcEEEEEEecCCCcEEEEEeCC----CeEEEEe----CCCCCCCCccccccc
Q 004214          308 SVRLWDSESRCCV---G-----VGTGHMGAVGAVAFSKKLQNFLVSGSSD----HTIKVWS----FDGLSDDAEQPMNLK  371 (768)
Q Consensus       308 ~i~iwd~~~~~~~---~-----~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd----~~~~~~~~~~~~~~~  371 (768)
                      .|++||+.+++..   .     .+.+|...+..++|+|++. ++++....    ..|.+||    ...+....     . 
T Consensus       225 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~-----~-  297 (719)
T 1z68_A          225 RIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPK-----T-  297 (719)
T ss_dssp             EEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECCG-----G-
T ss_pred             EEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceEE-----E-
Confidence            7889999987642   2     1336888899999999954 66664332    2477888    54331100     0 


Q ss_pred             eeeEeeccCCCeE-----EEEEccCCCEEEE--EeCCC--cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC
Q 004214          372 AKAVVAAHGKDIN-----SLAVAPNDSLVCT--GSQDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG  442 (768)
Q Consensus       372 ~~~~~~~~~~~i~-----~~~~s~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~  442 (768)
                      .......|...+.     .++|+|||+.++.  +..+|  .|.+||+.+++ ...+..+...+..+.++ +++.|+..+.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~  375 (719)
T 1z68_A          298 QEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSN  375 (719)
T ss_dssp             GEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEES
T ss_pred             EecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEe
Confidence            0000134555565     7899999996654  44555  57777877766 44566566678888877 7777766655


Q ss_pred             C-----CcEEEEeCCC--Cc-eeEEee----cCCCcEEEEEEEeCCCEEEEE-eCC--CcEEEEECCCCeEEEEec
Q 004214          443 D-----KTIKIWSISD--GS-CLKTFE----GHTSSVLRASFLTRGAQIVSC-GAD--GLVKLWTVRTGECIATYD  503 (768)
Q Consensus       443 d-----~~i~iwd~~~--~~-~~~~~~----~~~~~v~~~~~s~~~~~l~s~-~~d--g~i~iwd~~~~~~~~~~~  503 (768)
                      +     +.+++|.+..  +. ....+.    +|...+..+.|+|++++++.. +..  ..+.+||+.+++++..+.
T Consensus       376 ~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~  451 (719)
T 1z68_A          376 EFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE  451 (719)
T ss_dssp             CGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred             cCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence            4     7888998753  32 123333    266778899999999877643 333  468899998888665543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.87  E-value=2.6e-19  Score=185.36  Aligned_cols=265  Identities=12%  Similarity=0.105  Sum_probs=181.5

Q ss_pred             CCcEEEEEC--CCceeee-eeeCCccceEEEeeeeecCCCEEEEEEeC--CCeEEEEeCCCce--EEEeeecccCcEEEE
Q 004214          261 IEQVQVYDL--SSMSCSY-VLAGHSEIVLCLDTCALSSGKILIVTGSK--DNSVRLWDSESRC--CVGVGTGHMGAVGAV  333 (768)
Q Consensus       261 ~~~i~i~d~--~~~~~~~-~~~~~~~~v~~l~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~--~~~~~~~~~~~v~~~  333 (768)
                      ++.|.+|++  .++.... ....+...+..++  +.++++ +++++..  ++.|.+|++.++.  .+..+..+...+..+
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a--~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~   91 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLA--LSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV   91 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEE--ECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEE--EccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence            345666654  4555433 2233444555565  666665 4555543  6899999997765  344445577788899


Q ss_pred             EEecCCCcEEEEEe-CCCeEEEEeCCCCCCCCccccccceeeEeec---------cCCCeEEEEEccCCCEEEEEeCCCc
Q 004214          334 AFSKKLQNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA---------HGKDINSLAVAPNDSLVCTGSQDRT  403 (768)
Q Consensus       334 ~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~~~~~s~~~~~l~~~~~dg~  403 (768)
                      +|+|+++ ++++++ .++.|.+|++.....       .........         +...+.+++|+|+|+++++...++.
T Consensus        92 a~spdg~-~l~~~~~~~~~v~v~~~~~~g~-------~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~  163 (347)
T 3hfq_A           92 AVDEARQ-LVYSANYHKGTAEVMKIAADGA-------LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDK  163 (347)
T ss_dssp             EEETTTT-EEEEEETTTTEEEEEEECTTSC-------EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTE
T ss_pred             EECCCCC-EEEEEeCCCCEEEEEEeCCCCC-------eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCE
Confidence            9999987 455555 789999999863211       111111111         2235889999999996666667889


Q ss_pred             EEEEeCC-CCceEE--EEecc-CCCeEEEEEccCCCEEEE-eeCCCcEEEEeCCC--Cce--eEEeecCC------CcEE
Q 004214          404 ACVWRLP-DLVSVV--TFRGH-KRGIWSVEFSPVDQVVIT-ASGDKTIKIWSISD--GSC--LKTFEGHT------SSVL  468 (768)
Q Consensus       404 i~i~d~~-~~~~~~--~~~~~-~~~v~~v~~s~~~~~l~t-~~~d~~i~iwd~~~--~~~--~~~~~~~~------~~v~  468 (768)
                      |.+|++. +++...  .+..+ ...+..++|+|+|+++++ +..++.|.+|++..  ++.  +..+....      ..+.
T Consensus       164 v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  243 (347)
T 3hfq_A          164 VYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAA  243 (347)
T ss_dssp             EEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEE
T ss_pred             EEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcce
Confidence            9999998 454322  22222 336788999999996655 56788999999874  443  33333322      4588


Q ss_pred             EEEEEeCCCEEE-EEeCCCcEEEEECC---CCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-CcEEEEEcC
Q 004214          469 RASFLTRGAQIV-SCGADGLVKLWTVR---TGECIATYDKHEDKIWALAVGKKTEMFATGGSD-ALVNLWHDS  536 (768)
Q Consensus       469 ~~~~s~~~~~l~-s~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d-g~v~vw~~~  536 (768)
                      .++|+|+|++|+ +...++.|.+|++.   +.+.+..+..+...+.+++|+|+|++|++++.+ +.|.+|++.
T Consensus       244 ~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          244 AIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            999999999884 55568999999997   235666676666778899999999998888764 899999654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.86  E-value=7.3e-19  Score=182.02  Aligned_cols=285  Identities=10%  Similarity=0.114  Sum_probs=184.0

Q ss_pred             cCCCcEEEEEC--CCCEEEE-EEEcCCCcEEEEEEeeCCCccEEEEEe--CCCcEEEEECCCCe--eEEEecCccceeEE
Q 004214            7 GADRKVLVWDV--DGGFCTH-YFKGHKGVVSSILFHPDTDKSLLFSGS--DDATVRVWDLLAKK--CVATLDKHFSRVTS   79 (768)
Q Consensus         7 ~~dg~i~vwd~--~~~~~~~-~l~gh~~~V~~l~~spd~~~~~l~sg~--~dg~I~iWd~~~~~--~~~~l~~h~~~V~~   79 (768)
                      +.++.|.+|++  .++.... ....+...+..++|+|||+  +++++.  .++.|.+||+.+++  .+..+..+...+..
T Consensus        13 ~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~--l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~   90 (347)
T 3hfq_A           13 KTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC--LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAY   90 (347)
T ss_dssp             SSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE--EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred             CCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe--EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence            34567777766  4676544 3455678888999999987  344443  37899999997776  45555667788999


Q ss_pred             EEEcCCCCEEEEEe-CCCeEEEEECCC-CeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEee
Q 004214           80 MAITSDGSTLISAG-RDKVVNLWDLRD-YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG  157 (768)
Q Consensus        80 l~fs~d~~~L~s~~-~dg~i~vWd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (768)
                      ++|+|||++|++++ .++.|.+|++.. +... .+.      .+.  ..+                              
T Consensus        91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~-~~~------~~~--~~~------------------------------  131 (347)
T 3hfq_A           91 VAVDEARQLVYSANYHKGTAEVMKIAADGALT-LTD------TVQ--HSG------------------------------  131 (347)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECTTSCEE-EEE------EEE--CCC------------------------------
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEeCCCCCee-ecc------eee--cCC------------------------------
Confidence            99999999999888 678999999853 2110 000      000  000                              


Q ss_pred             CCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecc
Q 004214          158 ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG  237 (768)
Q Consensus       158 ~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~  237 (768)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (347)
T 3hfq_A          132 --------------------------------------------------------------------------------  131 (347)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC-C
Q 004214          238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-S  316 (768)
Q Consensus       238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~-~  316 (768)
                      . +         +.                          ...+...+.++.  +.++++ +++++..++.|.+|++. +
T Consensus       132 ~-~---------p~--------------------------~~~~~~~~~~~~--~spdg~-l~v~~~~~~~v~~~~~~~~  172 (347)
T 3hfq_A          132 H-G---------PR--------------------------PEQDGSHIHYTD--LTPDNR-LAVIDLGSDKVYVYNVSDA  172 (347)
T ss_dssp             C-C---------SS--------------------------TTCSSCCEEEEE--ECTTSC-EEEEETTTTEEEEEEECTT
T ss_pred             C-C---------CC--------------------------ccccCCCceEEE--ECCCCc-EEEEeCCCCEEEEEEECCC
Confidence            0 0         00                          000112233443  455555 46666666777777776 4


Q ss_pred             ceEEE--eeec-ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccC------CCeEEEE
Q 004214          317 RCCVG--VGTG-HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG------KDINSLA  387 (768)
Q Consensus       317 ~~~~~--~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~  387 (768)
                      +....  .+.. ....+..++|+|+|+.+++++..++.|.+|++.....      ............      ..+..++
T Consensus       173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~i~  246 (347)
T 3hfq_A          173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG------AFTQLGIVKTIPADYTAHNGAAAIR  246 (347)
T ss_dssp             SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT------EEEEEEEEESSCTTCCSCCEEEEEE
T ss_pred             CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC------ceEEeeeeeecCCCCCCCCcceeEE
Confidence            43222  1222 2235678999999886666677889999999874211      111111111111      3488999


Q ss_pred             EccCCCEE-EEEeCCCcEEEEeCC---CCceEEEEeccCCCeEEEEEccCCCEEEEeeC-CCcEEEE--eCCCCcee
Q 004214          388 VAPNDSLV-CTGSQDRTACVWRLP---DLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIW--SISDGSCL  457 (768)
Q Consensus       388 ~s~~~~~l-~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-d~~i~iw--d~~~~~~~  457 (768)
                      |+|+|++| ++...++.|.+|++.   ..+.+..+..+...+..++|+|+|++|++++. ++.|.+|  |..+|+..
T Consensus       247 ~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          247 LSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             ECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            99999977 455568999999997   33556666666777899999999998888775 4899999  55556544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.86  E-value=3e-20  Score=206.93  Aligned_cols=270  Identities=11%  Similarity=0.051  Sum_probs=200.4

Q ss_pred             CCceeEEEEecCCCCEEEEEeC-CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeC---CCeEEEE--
Q 004214          239 NEEILDLKFLGEEEQYLAVATN-IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK---DNSVRLW--  312 (768)
Q Consensus       239 ~~~i~~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~---dg~i~iw--  312 (768)
                      ..+|.+++|++ +++.+|.++. +|.+.||++.++........+...+..+.  ++++  .++++++.   +....+|  
T Consensus        21 ~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~--~spd--~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           21 AVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPH--YGVG--RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             HSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEEC--TTCS--EEEEEEECSTTSCCEEEEEE
T ss_pred             ccchheeecCC-CCCeEEEEEccCCceeEEEEcCCCcEeeeccccccccccc--CCCC--eEEEEeccCCCCcceEEEEE
Confidence            44688999985 6777777666 99999999977766544444436787775  5544  55776664   4545555  


Q ss_pred             eC--CCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214          313 DS--ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP  390 (768)
Q Consensus       313 d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  390 (768)
                      +.  .....  .+... ..+...+|+|+++..+++.+.++.+.+||+.++.          ..... .+..  .+++|+|
T Consensus        96 ~~~~~g~~~--~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~----------~~~l~-~~~~--~~~~~sp  159 (582)
T 3o4h_A           96 NTSRPGEEQ--RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGG----------LRELA-RLPG--FGFVSDI  159 (582)
T ss_dssp             ETTSTTCCE--ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE----------EEEEE-EESS--CEEEEEE
T ss_pred             eccCCCccc--cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCc----------EEEee-cCCC--ceEEECC
Confidence            44  33322  22222 2344668899887666665555566699987431          22222 2222  7899999


Q ss_pred             CCCEEEEEeCC----CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCC--cEEEEeCCCCceeEEeecCC
Q 004214          391 NDSLVCTGSQD----RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK--TIKIWSISDGSCLKTFEGHT  464 (768)
Q Consensus       391 ~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~--~i~iwd~~~~~~~~~~~~~~  464 (768)
                      ||++|++++.+    +.|++||+.+++.. .+..|...+..++|||||+.|+++..++  .|++||+.++++. .+.+|.
T Consensus       160 DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~  237 (582)
T 3o4h_A          160 RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS  237 (582)
T ss_dssp             ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC
T ss_pred             CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC
Confidence            99999988877    78999999888765 6778888999999999999999888888  8999999999888 777888


Q ss_pred             CcEEEEE--------EEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCc---EEEE
Q 004214          465 SSVLRAS--------FLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL---VNLW  533 (768)
Q Consensus       465 ~~v~~~~--------~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~---v~vw  533 (768)
                      ..+..+.        |+|||..+++++.||.+++|++  |++..   .+.+.+.+++|+ +++++++++.+..   +.+|
T Consensus       238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~  311 (582)
T 3o4h_A          238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSL  311 (582)
T ss_dssp             SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEE
Confidence            7777777        9999988999999999999999  77665   345789999999 9999998887754   6666


Q ss_pred             EcCC
Q 004214          534 HDST  537 (768)
Q Consensus       534 ~~~~  537 (768)
                      +..+
T Consensus       312 d~~~  315 (582)
T 3o4h_A          312 PSGE  315 (582)
T ss_dssp             TTCC
T ss_pred             cCCC
Confidence            6543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=5.9e-19  Score=182.89  Aligned_cols=273  Identities=10%  Similarity=0.022  Sum_probs=190.9

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCc-cceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeeccc-
Q 004214          250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS-EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM-  327 (768)
Q Consensus       250 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-  327 (768)
                      +++.++++++.++.|.+||..+++....+..+. ..+..+.  +.++++.+++++..++.|.+||+.+++....+..+. 
T Consensus         9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~--~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~   86 (349)
T 1jmx_B            9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAM--MAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV   86 (349)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEE--ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeE--ECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc
Confidence            467788999999999999999999887776554 1345555  777887766777789999999999998877665332 


Q ss_pred             -----CcEEEEEEecCCCcEEEEEeCC------------CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214          328 -----GAVGAVAFSKKLQNFLVSGSSD------------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP  390 (768)
Q Consensus       328 -----~~v~~~~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  390 (768)
                           ..+..++|+|+++ ++++++.+            +.|.+||+..+..       ...... ..+...+.+++|+|
T Consensus        87 ~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-------~~~~~~-~~~~~~~~~~~~s~  157 (349)
T 1jmx_B           87 PGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-------AKPVRT-FPMPRQVYLMRAAD  157 (349)
T ss_dssp             TTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-------BCCSEE-EECCSSCCCEEECT
T ss_pred             cccccccccceEECCCCC-EEEEEcccccccccccccCCCeEEEEECCCccc-------cceeee-ccCCCcccceeECC
Confidence                 2367899999987 56666644            8999999874311       111111 22344688999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCC------------------------CeEEEEEccCCCEEEEeeCC-Cc
Q 004214          391 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR------------------------GIWSVEFSPVDQVVITASGD-KT  445 (768)
Q Consensus       391 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------------------~v~~v~~s~~~~~l~t~~~d-~~  445 (768)
                      +|+ +++++  +.|.+||+.+++....+..+..                        ....+++++++......... ..
T Consensus       158 dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  234 (349)
T 1jmx_B          158 DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  234 (349)
T ss_dssp             TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence            999 55554  4499999999988877654320                        23456666654211111000 11


Q ss_pred             EEEEeCCCCce-eEEeecCCCcEEEEEEEe-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEE
Q 004214          446 IKIWSISDGSC-LKTFEGHTSSVLRASFLT-RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFAT  523 (768)
Q Consensus       446 i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s  523 (768)
                      +..+|..+++. ...+..+...+..++|+| +|++++++  ++.|.+||+.+++.+..+.. ...+.+++|+|++++|++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~  311 (349)
T 1jmx_B          235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYL  311 (349)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEE
T ss_pred             EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEE
Confidence            22244444432 112233566788999999 99999988  88999999999999888863 445778999999999988


Q ss_pred             EeCCCcEEEEEcCCHH
Q 004214          524 GGSDALVNLWHDSTAA  539 (768)
Q Consensus       524 ~~~dg~v~vw~~~~~~  539 (768)
                      ++.++.|.+|+..+.+
T Consensus       312 ~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          312 GGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             ESBSSEEEEEETTTTE
T ss_pred             ecCCCeEEEEeccccc
Confidence            8889999999987653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.85  E-value=2.7e-20  Score=197.55  Aligned_cols=221  Identities=11%  Similarity=0.119  Sum_probs=167.5

Q ss_pred             CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCc-----cccccceeeEeeccCC
Q 004214          307 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE-----QPMNLKAKAVVAAHGK  381 (768)
Q Consensus       307 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~  381 (768)
                      +.+++|+....       .+...+..+++++++. ++++++.++ +++|+.........     .............+..
T Consensus        23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (434)
T 2oit_A           23 KKVRIFDSPEE-------LPKERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKF   93 (434)
T ss_dssp             CEEECSCCCSS-------CCCSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSS
T ss_pred             eeEEecCCccc-------cCCCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCC
Confidence            46777764321       2344678899999866 788888887 88887542211000     0000001111234567


Q ss_pred             CeEEEEEccCCCEEE----EEeCCCcEEEEeCCCC--------ce---EEEEeccCCCeEEEEEccC-CCEEEEeeCCCc
Q 004214          382 DINSLAVAPNDSLVC----TGSQDRTACVWRLPDL--------VS---VVTFRGHKRGIWSVEFSPV-DQVVITASGDKT  445 (768)
Q Consensus       382 ~i~~~~~s~~~~~l~----~~~~dg~i~i~d~~~~--------~~---~~~~~~~~~~v~~v~~s~~-~~~l~t~~~d~~  445 (768)
                      .|.+++|+|+|++|+    +|+.|+.|++||+.++        +.   +..+.+|...|++++|+|+ +.+|++++.||+
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~  173 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS  173 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence            899999999999999    7888999999998654        22   4556679999999999998 899999999999


Q ss_pred             EEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCC-------CcEEEEEEcCCC
Q 004214          446 IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE-------DKIWALAVGKKT  518 (768)
Q Consensus       446 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~l~~s~~~  518 (768)
                      |++||++++..+....+|...|++++|+|+|++|++|+.||.|++||++ ++....+..|.       ..|.+++|++++
T Consensus       174 v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~  252 (434)
T 2oit_A          174 IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY  252 (434)
T ss_dssp             EEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred             EEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc
Confidence            9999999998877778899999999999999999999999999999998 66666664442       389999999998


Q ss_pred             CEEEEE-eCCCc------EEEEEcCC
Q 004214          519 EMFATG-GSDAL------VNLWHDST  537 (768)
Q Consensus       519 ~~l~s~-~~dg~------v~vw~~~~  537 (768)
                      .++++. ..||.      +++|++..
T Consensus       253 ~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          253 VFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             EEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             eEEEEEccCCCccCCCCceEEEEecc
Confidence            887653 34443      88999874

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.84  E-value=5.2e-18  Score=176.65  Aligned_cols=303  Identities=10%  Similarity=0.131  Sum_probs=188.7

Q ss_pred             cCCCcEEEEEC--CCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCC----CcEEEEECCC--Ce--eEEEecCccce
Q 004214            7 GADRKVLVWDV--DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD----ATVRVWDLLA--KK--CVATLDKHFSR   76 (768)
Q Consensus         7 ~~dg~i~vwd~--~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~d----g~I~iWd~~~--~~--~~~~l~~h~~~   76 (768)
                      +.++.|.+|.+  .++........|...+..++|+|||++  |++++.+    +.|.+|++..  ++  .+.....+...
T Consensus        24 ~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~--l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~  101 (361)
T 3scy_A           24 GNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKF--VYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGAD  101 (361)
T ss_dssp             SSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSE--EEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSC
T ss_pred             CCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCE--EEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCC
Confidence            45778999976  566644333337888899999999987  7777665    8999998865  43  34444445566


Q ss_pred             eEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEE
Q 004214           77 VTSMAITSDGSTLISAG-RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT  155 (768)
Q Consensus        77 V~~l~fs~d~~~L~s~~-~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (768)
                      +..+++  ++++|++++ .++.|.+|++.....+..+...     ..  ..+.                           
T Consensus       102 p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~-----~~--~~g~---------------------------  145 (361)
T 3scy_A          102 PCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDV-----IE--FKGS---------------------------  145 (361)
T ss_dssp             EEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEE-----EE--CCCC---------------------------
T ss_pred             cEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccccee-----EE--ccCC---------------------------
Confidence            778888  888888776 5789999998643221111000     00  0000                           


Q ss_pred             eeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeee
Q 004214          156 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL  235 (768)
Q Consensus       156 ~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~  235 (768)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (361)
T 3scy_A          146 --------------------------------------------------------------------------------  145 (361)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214          236 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE  315 (768)
Q Consensus       236 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~  315 (768)
                         .          +.                         ....+...+.++.  +.++++.+++++..++.|.+|++.
T Consensus       146 ---~----------~~-------------------------~~~~~~~~~~~~~--~spdg~~l~~~~~~~~~v~v~~~~  185 (361)
T 3scy_A          146 ---G----------PD-------------------------KERQTMPHLHCVR--ITPDGKYLLADDLGTDQIHKFNIN  185 (361)
T ss_dssp             ---C----------SC-------------------------TTTCSSCCEEEEE--ECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ---C----------CC-------------------------ccccCCCcceEEE--ECCCCCEEEEEeCCCCEEEEEEEc
Confidence               0          00                         0000112233443  556666545555556777777665


Q ss_pred             Cce-------E------EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCC
Q 004214          316 SRC-------C------VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD  382 (768)
Q Consensus       316 ~~~-------~------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (768)
                      ...       .      ......+......++|+|+++.++++...++.|.+|++..+...     ..........+...
T Consensus       186 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~-----~~~~~~~~~~~~~~  260 (361)
T 3scy_A          186 PNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLD-----EIQTVAADTVNAQG  260 (361)
T ss_dssp             TTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEE-----EEEEEESCSSCCCC
T ss_pred             CCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceE-----EeEEEecCCCCCCC
Confidence            322       1      11122344567889999998744444447999999998743100     00011111223345


Q ss_pred             eEEEEEccCCCEEEEEeCC--CcEEEEeCC--CCc--eEEEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEE--eCCC
Q 004214          383 INSLAVAPNDSLVCTGSQD--RTACVWRLP--DLV--SVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIW--SISD  453 (768)
Q Consensus       383 i~~~~~s~~~~~l~~~~~d--g~i~i~d~~--~~~--~~~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iw--d~~~  453 (768)
                      +.+++|+|+|++|+++..+  +.|.+|++.  +++  .+..+.. ...+.+++|+|+|++|++++ .++.|.+|  |..+
T Consensus       261 ~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~  339 (361)
T 3scy_A          261 SGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQAT  339 (361)
T ss_dssp             EEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTT
T ss_pred             cccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCC
Confidence            6899999999998777765  899999986  344  4444554 56788999999999888887 67899996  5556


Q ss_pred             CceeEEe-ecCCCcEEEEEEE
Q 004214          454 GSCLKTF-EGHTSSVLRASFL  473 (768)
Q Consensus       454 ~~~~~~~-~~~~~~v~~~~~s  473 (768)
                      ++..... ..+...+.|+.|.
T Consensus       340 g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          340 GLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             CCEEECSCCEECSSEEEEEEE
T ss_pred             CcEeecceeeeCCCCeEEEEc
Confidence            7655443 2345578888886

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.84  E-value=2.7e-18  Score=178.79  Aligned_cols=278  Identities=8%  Similarity=0.055  Sum_probs=182.7

Q ss_pred             CEEEEEe----CCCcEEEEEC--CCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC----CeEEEEeCCC--ceE-
Q 004214          253 QYLAVAT----NIEQVQVYDL--SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD----NSVRLWDSES--RCC-  319 (768)
Q Consensus       253 ~~l~~~~----~~~~i~i~d~--~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d----g~i~iwd~~~--~~~-  319 (768)
                      .++++|+    .++.|.+|.+  .+++.......+...+..++  +.++++. |++++.+    +.|.+|++..  +.. 
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~--~spdg~~-l~~~~~~~~~~~~v~~~~~~~~~g~~~   90 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLI--PSADGKF-VYSVNEFSKDQAAVSAFAFDKEKGTLH   90 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEE--ECTTSSE-EEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEE--ECCCCCE-EEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence            3455554    3467888865  45554332222555555565  6777776 6666664    8999998765  443 


Q ss_pred             -EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccc----eeeEeeccCCCeEEEEEccCCCE
Q 004214          320 -VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK----AKAVVAAHGKDINSLAVAPNDSL  394 (768)
Q Consensus       320 -~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~s~~~~~  394 (768)
                       +.....+......+++  +++.++++...++.|.+|++..............    .......+...+.+++|+|+|++
T Consensus        91 ~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~  168 (361)
T 3scy_A           91 LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY  168 (361)
T ss_dssp             EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred             EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence             3334445556777777  6564445555789999999974322111000000    00000112334688999999997


Q ss_pred             EEEEe-CCCcEEEEeCCCCce------E-------EEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCce--e
Q 004214          395 VCTGS-QDRTACVWRLPDLVS------V-------VTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSC--L  457 (768)
Q Consensus       395 l~~~~-~dg~i~i~d~~~~~~------~-------~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~~--~  457 (768)
                      +++++ .++.|.+|++.....      +       .....+...+..++|+|+|+++++++ .++.|.+|++.++..  +
T Consensus       169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~  248 (361)
T 3scy_A          169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI  248 (361)
T ss_dssp             EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred             EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence            76655 478999998875431      1       11223455678999999999887777 689999999987754  3


Q ss_pred             EEee---cCCCcEEEEEEEeCCCEEEEEeCC--CcEEEEECC--CCe--EEEEeccCCCcEEEEEEcCCCCEEEEEe-CC
Q 004214          458 KTFE---GHTSSVLRASFLTRGAQIVSCGAD--GLVKLWTVR--TGE--CIATYDKHEDKIWALAVGKKTEMFATGG-SD  527 (768)
Q Consensus       458 ~~~~---~~~~~v~~~~~s~~~~~l~s~~~d--g~i~iwd~~--~~~--~~~~~~~~~~~v~~l~~s~~~~~l~s~~-~d  527 (768)
                      ..+.   .+......++|+|||++|+++..+  +.|.+|++.  +++  .+..+.. ...+.+++|+|+|++|++++ .+
T Consensus       249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~  327 (361)
T 3scy_A          249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDT  327 (361)
T ss_dssp             EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTT
T ss_pred             EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCC
Confidence            3332   334557899999999999776654  899999985  454  4555554 55678999999999988887 67


Q ss_pred             CcEEEEEcC
Q 004214          528 ALVNLWHDS  536 (768)
Q Consensus       528 g~v~vw~~~  536 (768)
                      +.|.+|++.
T Consensus       328 ~~v~v~~~d  336 (361)
T 3scy_A          328 NVIQIFERD  336 (361)
T ss_dssp             TEEEEEEEC
T ss_pred             CCEEEEEEE
Confidence            899998765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=1.4e-19  Score=207.25  Aligned_cols=362  Identities=12%  Similarity=0.091  Sum_probs=228.6

Q ss_pred             ecCCCcEEEEECCCCEEEEEEEcCCC---cEEEEEEeeCCCccEEEEEeC---------CCcEEEEECCCCeeE--EEec
Q 004214            6 EGADRKVLVWDVDGGFCTHYFKGHKG---VVSSILFHPDTDKSLLFSGSD---------DATVRVWDLLAKKCV--ATLD   71 (768)
Q Consensus         6 g~~dg~i~vwd~~~~~~~~~l~gh~~---~V~~l~~spd~~~~~l~sg~~---------dg~I~iWd~~~~~~~--~~l~   71 (768)
                      .+.|+.|.+||+.+++....+.+|..   .|.+++|||||++  |++++.         ++.|++||+.+++.+  ..+ 
T Consensus        32 ~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~--la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-  108 (719)
T 1z68_A           32 QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQF--VYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-  108 (719)
T ss_dssp             ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSE--EEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-
T ss_pred             EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCe--EEEEecCceeEEeecceEEEEEECCCCccccceec-
Confidence            34699999999999998877776655   4999999999998  766655         789999999999873  223 


Q ss_pred             CccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcce
Q 004214           72 KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEI  151 (768)
Q Consensus        72 ~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (768)
                        ...+..++|||||++|+++. ++.|++||+.+++..........            .                     
T Consensus       109 --~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~------------~---------------------  152 (719)
T 1z68_A          109 --PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE------------N---------------------  152 (719)
T ss_dssp             --CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT------------T---------------------
T ss_pred             --CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc------------C---------------------
Confidence              24688999999999999886 78999999988875432111000            0                     


Q ss_pred             EEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEec-CeEEEEeeccCcccceeeE
Q 004214          152 HFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD-QQLLLYTTVEVPEKKMELI  230 (768)
Q Consensus       152 ~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~~~~~~~~~~~~~~~~  230 (768)
                      .+..+..           ..+..            ...........|+|++..++.++.+ +.+..|.+.....      
T Consensus       153 ~v~~g~~-----------~~v~~------------ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~------  203 (719)
T 1z68_A          153 KIFNGIP-----------DWVYE------------EEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGD------  203 (719)
T ss_dssp             TEEESSC-----------CHHHH------------HHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCS------
T ss_pred             CeEcccc-----------cceee------------eecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCC------
Confidence            0000000           00000            0000112356778888888777654 3334443321110      


Q ss_pred             EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceee--------eeeeCCccceEEEeeeeecCCCEEEEE
Q 004214          231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS--------YVLAGHSEIVLCLDTCALSSGKILIVT  302 (768)
Q Consensus       231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~--------~~~~~~~~~v~~l~~~~~~~~~~~l~~  302 (768)
                            .....+..+.|......     .....|++||+.++...        ..+.+|...+..+.  +++++ .++++
T Consensus       204 ------~~~~~~~~~~yp~~g~~-----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~SpD~-~~~~~  269 (719)
T 1z68_A          204 ------EQYPRTINIPYPKAGAK-----NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLT--WVTDE-RVCLQ  269 (719)
T ss_dssp             ------SSSCEEEEEECCBTTSC-----CCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEE--ESSSS-EEEEE
T ss_pred             ------CCCccceeecCCCCCCC-----CCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeE--EeCCC-eEEEE
Confidence                  11223344444322211     12247899999988753        12346888888887  77774 54666


Q ss_pred             EeCC----CeEEEEe----CCCceEEEee----ecccCcEE-----EEEEecCCCcEEE-EEeCCCe--EEEEeCCCCCC
Q 004214          303 GSKD----NSVRLWD----SESRCCVGVG----TGHMGAVG-----AVAFSKKLQNFLV-SGSSDHT--IKVWSFDGLSD  362 (768)
Q Consensus       303 ~~~d----g~i~iwd----~~~~~~~~~~----~~~~~~v~-----~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~  362 (768)
                      ....    ..|.+||    ..++++....    .+|.+.+.     .+.|+|+|+.+++ +...+|.  |.+|++.... 
T Consensus       270 ~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-  348 (719)
T 1z68_A          270 WLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-  348 (719)
T ss_dssp             EEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-
T ss_pred             EeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-
Confidence            4432    2488899    8888776665    46777666     7899999886555 3446664  5555654321 


Q ss_pred             CCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCC--Cc-eEEEEec----cCCCeEEEEE
Q 004214          363 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-----RTACVWRLPD--LV-SVVTFRG----HKRGIWSVEF  430 (768)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~--~~-~~~~~~~----~~~~v~~v~~  430 (768)
                                ...+..+...+..+.++ +++.++..+.+     +..++|.+..  +. ....+..    |...+..+.|
T Consensus       349 ----------~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~  417 (719)
T 1z68_A          349 ----------AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASF  417 (719)
T ss_dssp             ----------CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEE
T ss_pred             ----------eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEE
Confidence                      12223345567777777 77777776654     7888888753  32 1233332    5567889999


Q ss_pred             ccCCCEEEE-eeCC--CcEEEEeCCCCceeEEee
Q 004214          431 SPVDQVVIT-ASGD--KTIKIWSISDGSCLKTFE  461 (768)
Q Consensus       431 s~~~~~l~t-~~~d--~~i~iwd~~~~~~~~~~~  461 (768)
                      +|++++++. ++.+  ..+.+||+.+++++..+.
T Consensus       418 s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~  451 (719)
T 1z68_A          418 SDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE  451 (719)
T ss_dssp             CGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred             CCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence            999887764 3333  468999998888766654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.83  E-value=2.9e-18  Score=177.63  Aligned_cols=292  Identities=10%  Similarity=0.036  Sum_probs=186.0

Q ss_pred             EEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCcc-ceeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeeee
Q 004214           35 SILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-SRVTSMAITSDGSTLIS-AGRDKVVNLWDLRDYSCKLTV  112 (768)
Q Consensus        35 ~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~-~~V~~l~fs~d~~~L~s-~~~dg~i~vWd~~~~~~~~~~  112 (768)
                      .+++++++..  +++++.+++|.+||+.+++.+..+..+. ..+..++|+|+|++++. ...++.|.+||+.+++....+
T Consensus         4 g~~~~~~~~~--~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            4 GPALKAGHEY--MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             CCCCCTTCEE--EEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccccCCCEE--EEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence            4567776554  8999999999999999999988887554 25889999999997654 456899999999988766554


Q ss_pred             ecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccc
Q 004214          113 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG  192 (768)
Q Consensus       113 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (768)
                      ......        +                                                            .....
T Consensus        82 ~~~~~~--------~------------------------------------------------------------~~~~~   93 (349)
T 1jmx_B           82 NLSSVP--------G------------------------------------------------------------EVGRS   93 (349)
T ss_dssp             ESCCST--------T------------------------------------------------------------EEEEC
T ss_pred             Eccccc--------c------------------------------------------------------------ccccc
Confidence            321100        0                                                            00001


Q ss_pred             eeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc
Q 004214          193 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM  272 (768)
Q Consensus       193 ~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~  272 (768)
                      +..+.++|++..++++..+....                                   ...   .+..++.|.+||+.++
T Consensus        94 ~~~~~~spdg~~l~~~~~~~~~~-----------------------------------~~~---~~~~~~~i~~~d~~~~  135 (349)
T 1jmx_B           94 MYSFAISPDGKEVYATVNPTQRL-----------------------------------NDH---YVVKPPRLEVFSTADG  135 (349)
T ss_dssp             SSCEEECTTSSEEEEEEEEEEEC-----------------------------------SSC---EEECCCEEEEEEGGGG
T ss_pred             ccceEECCCCCEEEEEccccccc-----------------------------------ccc---cccCCCeEEEEECCCc
Confidence            11222333333333332210000                                   000   0011367888888774


Q ss_pred             eee---eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccC---------------------
Q 004214          273 SCS---YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMG---------------------  328 (768)
Q Consensus       273 ~~~---~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------------------  328 (768)
                      +..   ..+..+ ..+.+++  +.+++. +++ ++  +.|.+||..+++....+..+..                     
T Consensus       136 ~~~~~~~~~~~~-~~~~~~~--~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (349)
T 1jmx_B          136 LEAKPVRTFPMP-RQVYLMR--AADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRH  208 (349)
T ss_dssp             GGBCCSEEEECC-SSCCCEE--ECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTC
T ss_pred             cccceeeeccCC-Cccccee--ECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcce
Confidence            432   223322 3466665  667776 344 43  3499999999888776653320                     


Q ss_pred             ---cEEEEEEecCCCc----------EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCE
Q 004214          329 ---AVGAVAFSKKLQN----------FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSL  394 (768)
Q Consensus       329 ---~v~~~~~~~~~~~----------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~  394 (768)
                         ....+++++++..          ++.....++.+++|++                   ..+...+.+++++| ++++
T Consensus       209 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~sp~dg~~  269 (349)
T 1jmx_B          209 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF-------------------ADLTELYFTGLRSPKDPNQ  269 (349)
T ss_dssp             EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE-------------------EECSSCEEEEEECSSCTTE
T ss_pred             eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc-------------------ccCCCcceeeEecCCCCCE
Confidence               2344556554321          1112223344444433                   22456788999999 9999


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC
Q 004214          395 VCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH  463 (768)
Q Consensus       395 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~  463 (768)
                      ++++  ++.|.+||+.+++.+..+.. ...+.+++|+|++++|++++.++.|++||+.+++.+..+..+
T Consensus       270 l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          270 IYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             EEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            9988  88999999999988887763 345789999999998888888999999999999988887644

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.83  E-value=6.9e-18  Score=174.59  Aligned_cols=297  Identities=13%  Similarity=0.129  Sum_probs=198.7

Q ss_pred             CCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeeeeecceeEeeE
Q 004214           52 DDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAG----------RDKVVNLWDLRDYSCKLTVPTYEMVEAV  121 (768)
Q Consensus        52 ~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~----------~dg~i~vWd~~~~~~~~~~~~~~~v~~~  121 (768)
                      .|+.|.+||..+++.+.++..+..+  .++|+|||++|+++.          .++.|.+||..+++.+.+++....    
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~----  102 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK----  102 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT----
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc----
Confidence            4789999999999999998877766  999999999999886          367899999988877666542100    


Q ss_pred             EecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccC
Q 004214          122 CAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPS  201 (768)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (768)
                            .                                                                         
T Consensus       103 ------~-------------------------------------------------------------------------  103 (361)
T 2oiz_A          103 ------R-------------------------------------------------------------------------  103 (361)
T ss_dssp             ------B-------------------------------------------------------------------------
T ss_pred             ------c-------------------------------------------------------------------------
Confidence                  0                                                                         


Q ss_pred             CCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC--CCcEEEEECCCceeeee-e
Q 004214          202 NQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN--IEQVQVYDLSSMSCSYV-L  278 (768)
Q Consensus       202 ~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--~~~i~i~d~~~~~~~~~-~  278 (768)
                                                        .........++++ +++++|+++..  ++.|.+||+.+++.+.. +
T Consensus       104 ----------------------------------~~~g~~p~~i~~s-pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i  148 (361)
T 2oiz_A          104 ----------------------------------VQGLNYDGLFRQT-TDGKFIVLQNASPATSIGIVDVAKGDYVEDVT  148 (361)
T ss_dssp             ----------------------------------CCBCCCGGGEEEC-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEG
T ss_pred             ----------------------------------cccCCCcceEEEC-CCCCEEEEECCCCCCeEEEEECCCCcEEEEEe
Confidence                                              0000011233333 35556655542  57888888888877766 4


Q ss_pred             eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-ceEEEe------eecccCcEEEEEEecCCCcEEEEEeCCCe
Q 004214          279 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGV------GTGHMGAVGAVAFSKKLQNFLVSGSSDHT  351 (768)
Q Consensus       279 ~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~  351 (768)
                      .....  ..+.  ..+.+...+++.+.||.+.+|+... ++....      +..+..++ .+.+++++. .++..+.++.
T Consensus       149 ~~~~~--~~v~--~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~~~~~~~~~~  222 (361)
T 2oiz_A          149 AAAGC--WSVI--PQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKD-KAHFVSYYGN  222 (361)
T ss_dssp             GGTTE--EEEE--ECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSS-EEEEEBTTSE
T ss_pred             cCCCc--ceeE--EcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCC-EEEEEeCCCe
Confidence            43221  1122  4565545588889999999998864 544421      22222222 233456655 4556678899


Q ss_pred             EEEEeCCCCCCCCccccccceeeEee--ccCCCeEEEEEccCCCEEEEEeC-----------CCcEEEEeCCCCceEEEE
Q 004214          352 IKVWSFDGLSDDAEQPMNLKAKAVVA--AHGKDINSLAVAPNDSLVCTGSQ-----------DRTACVWRLPDLVSVVTF  418 (768)
Q Consensus       352 i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~  418 (768)
                      |.++|+....................  ........++++|+++.++++..           .+.|.+||+.+++.+..+
T Consensus       223 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i  302 (361)
T 2oiz_A          223 VYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI  302 (361)
T ss_dssp             EEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE
T ss_pred             EEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE
Confidence            99999864321000000000000000  00111223789999888777643           347999999999999999


Q ss_pred             eccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC--ceeEEeecCCCcEEEEEEEeCCC
Q 004214          419 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG--SCLKTFEGHTSSVLRASFLTRGA  477 (768)
Q Consensus       419 ~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~  477 (768)
                      ..+.  +.+++|+|+|++|++++. ++|.+||..++  +.+.++..+......++++|+|+
T Consensus       303 ~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          303 PGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             ECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             ecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            8877  999999999999999887 99999999999  99999877778888999999985

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.82  E-value=3.3e-19  Score=189.17  Aligned_cols=247  Identities=14%  Similarity=0.130  Sum_probs=170.9

Q ss_pred             ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc-----------eEEE----eeecccCcEEEEEEecCCCcEEE----
Q 004214          284 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-----------CCVG----VGTGHMGAVGAVAFSKKLQNFLV----  344 (768)
Q Consensus       284 ~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------~~~~----~~~~~~~~v~~~~~~~~~~~~l~----  344 (768)
                      .+..++  +.+.++. +++++.+| +++|+....           ....    ....+...|.+++|+|+++ +|+    
T Consensus        38 ~~n~la--vs~~~~~-l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~lav~~~  112 (434)
T 2oit_A           38 RSSLLA--VSNKYGL-VFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNL-TLSACMM  112 (434)
T ss_dssp             CCBCEE--EETTTTE-EEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSC-EEEEEEE
T ss_pred             CccEEE--EecCCCE-EEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCC-EEEEEEe
Confidence            345554  5566665 88888887 888864211           1111    0123567899999999977 566    


Q ss_pred             EEeCCCeEEEEeCCCCCCCCccc-cccceeeEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceEEEEeccC
Q 004214          345 SGSSDHTIKVWSFDGLSDDAEQP-MNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLPDLVSVVTFRGHK  422 (768)
Q Consensus       345 s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  422 (768)
                      +++.|+.|++||+.......... ..........+|...|.+++|+|+ +.+|++++.||+|++||++++.......+|.
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~  192 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPST  192 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGG
T ss_pred             ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCC
Confidence            78889999999986431000000 011123445678999999999997 8999999999999999999987777777899


Q ss_pred             CCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC-------CcEEEEEEEeCCCEEEEE-eCCC------cE
Q 004214          423 RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-------SSVLRASFLTRGAQIVSC-GADG------LV  488 (768)
Q Consensus       423 ~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~s~-~~dg------~i  488 (768)
                      ..|++++|+|+|++|++|+.||+|++||++ ++....+..|.       ..|.++.|++++.++++. ..||      .+
T Consensus       193 ~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v  271 (434)
T 2oit_A          193 VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV  271 (434)
T ss_dssp             GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEE
T ss_pred             CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCce
Confidence            999999999999999999999999999998 66666665442       389999999998887553 3343      38


Q ss_pred             EEEECCCCe-----EEEEec-------cCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEEcC
Q 004214          489 KLWTVRTGE-----CIATYD-------KHEDKIWALAVGKKTEMFATGG-SDALVNLWHDS  536 (768)
Q Consensus       489 ~iwd~~~~~-----~~~~~~-------~~~~~v~~l~~s~~~~~l~s~~-~dg~v~vw~~~  536 (768)
                      ++|++.+.+     ....+.       +...+-..+..-++.+++++++ ..+.|.|....
T Consensus       272 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          272 VMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             EEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             EEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence            999997642     112221       1112222333336667666555 44556666643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.82  E-value=2.9e-18  Score=180.57  Aligned_cols=321  Identities=11%  Similarity=0.008  Sum_probs=200.4

Q ss_pred             cEEEEECCCCEEEEEEEcCCCcEEE-----EEEeeCCCccEEEEEeC-CC--cEEEEECCCCeeEEEecCccceeEEEEE
Q 004214           11 KVLVWDVDGGFCTHYFKGHKGVVSS-----ILFHPDTDKSLLFSGSD-DA--TVRVWDLLAKKCVATLDKHFSRVTSMAI   82 (768)
Q Consensus        11 ~i~vwd~~~~~~~~~l~gh~~~V~~-----l~~spd~~~~~l~sg~~-dg--~I~iWd~~~~~~~~~l~~h~~~V~~l~f   82 (768)
                      ....+|..+|..+..+..|......     .+|||||++  |+.++. +|  .|.+||+.+++......+|...+..++|
T Consensus        11 ~~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~   88 (388)
T 3pe7_A           11 FDTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSK--LLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFL   88 (388)
T ss_dssp             CEEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCE--EEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEE
T ss_pred             ceEEecCCCCcceEEecCCcccccchhhcCccCCCCCCE--EEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEE
Confidence            3445688889889999999888777     899999998  776666 66  4888999999988777777777767889


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEE
Q 004214           83 TSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIV  162 (768)
Q Consensus        83 s~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i  162 (768)
                      +|||++|+.++.++.|.+||+.+++.......+..                                             
T Consensus        89 spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~---------------------------------------------  123 (388)
T 3pe7_A           89 SPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAE---------------------------------------------  123 (388)
T ss_dssp             CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT---------------------------------------------
T ss_pred             cCCCCEEEEEeCCCeEEEEECCCCcceeeeechhh---------------------------------------------
Confidence            99999999999999999999988754322211000                                             


Q ss_pred             EEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCce
Q 004214          163 RMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEI  242 (768)
Q Consensus       163 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i  242 (768)
                                                                                                    .+
T Consensus       124 ------------------------------------------------------------------------------~~  125 (388)
T 3pe7_A          124 ------------------------------------------------------------------------------WV  125 (388)
T ss_dssp             ------------------------------------------------------------------------------EE
T ss_pred             ------------------------------------------------------------------------------cc
Confidence                                                                                          00


Q ss_pred             eEEEE-ecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE
Q 004214          243 LDLKF-LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG  321 (768)
Q Consensus       243 ~~~~~-~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  321 (768)
                      ....| ..+++..++....       +-.....   +.....        +.    . .+....++.|.+||+.+++...
T Consensus       126 ~~~~~~~~~dg~~l~~~~~-------~~~~~~~---~~~~~~--------~~----~-~~~~~~~~~l~~~d~~~g~~~~  182 (388)
T 3pe7_A          126 GYGTWVANSDCTKLVGIEI-------RREDWVP---LTDWKK--------FH----E-FYFTKPCCRLMRVDLKTGESTV  182 (388)
T ss_dssp             EEEEEEECTTSSEEEEEEE-------EGGGCCC---CCSHHH--------HH----H-HGGGCCCEEEEEEETTTCCEEE
T ss_pred             cccceeECCCCCeeccccc-------cCccccc---ccccch--------hh----h-hhccCCcceEEEEECCCCceEE
Confidence            00000 0122223222100       0000000   000000        00    0 0112234678999999886554


Q ss_pred             eeecccCcEEEEEEec-CCCcEEEEEeC------CCeEEEEeCCCCCCCCccccccceeeEeeccC--CCeEEEEEccCC
Q 004214          322 VGTGHMGAVGAVAFSK-KLQNFLVSGSS------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG--KDINSLAVAPND  392 (768)
Q Consensus       322 ~~~~~~~~v~~~~~~~-~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~  392 (768)
                      . ..+...+..+.|+| +++ .++..+.      ...|.++|.....           ...+..+.  ..+...+|+|||
T Consensus       183 l-~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~-----------~~~l~~~~~~~~~~~~~~spdg  249 (388)
T 3pe7_A          183 I-LQENQWLGHPIYRPYDDS-TVAFCHEGPHDLVDARMWLINEDGTN-----------MRKVKTHAEGESCTHEFWVPDG  249 (388)
T ss_dssp             E-EEESSCEEEEEEETTEEE-EEEEEECSCTTTSSCSEEEEETTSCC-----------CEESCCCCTTEEEEEEEECTTS
T ss_pred             e-ecCCccccccEECCCCCC-EEEEEEecCCCCCcceEEEEeCCCCc-----------eEEeeeCCCCcccccceECCCC
Confidence            4 45667789999999 877 4554444      2367777765431           11111222  247788999999


Q ss_pred             CEEEEEeC-CC----cEEEEeCCCCceEE--EEeccCCC---eEEEEEccCCCEEEEe---------eCCCcEEEEeCCC
Q 004214          393 SLVCTGSQ-DR----TACVWRLPDLVSVV--TFRGHKRG---IWSVEFSPVDQVVITA---------SGDKTIKIWSISD  453 (768)
Q Consensus       393 ~~l~~~~~-dg----~i~i~d~~~~~~~~--~~~~~~~~---v~~v~~s~~~~~l~t~---------~~d~~i~iwd~~~  453 (768)
                      +.|+..+. ++    .|++||+.+++...  .+.++...   ...+.|+|+|+.|+..         ..+..|++||+.+
T Consensus       250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~  329 (388)
T 3pe7_A          250 SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN  329 (388)
T ss_dssp             SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred             CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence            97766443 22    39999999887433  33321110   1223799999888754         4567899999988


Q ss_pred             CceeEEeecCCC-----------cEEEEEEEeCCCEEEEEeC-CCcEEEEEC
Q 004214          454 GSCLKTFEGHTS-----------SVLRASFLTRGAQIVSCGA-DGLVKLWTV  493 (768)
Q Consensus       454 ~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~~-dg~i~iwd~  493 (768)
                      ++. ..+..|..           .+..++|+|||++|+.++. +|...||.+
T Consensus       330 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          330 GTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             TEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             Cce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence            765 44555555           5788999999998876654 666666643

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.82  E-value=1.8e-17  Score=171.47  Aligned_cols=291  Identities=15%  Similarity=0.119  Sum_probs=186.6

Q ss_pred             CCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEE--------eCCCcEEEEECCCCeeEEEecCc------
Q 004214            8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG--------SDDATVRVWDLLAKKCVATLDKH------   73 (768)
Q Consensus         8 ~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg--------~~dg~I~iWd~~~~~~~~~l~~h------   73 (768)
                      .|+.|.+||..+++.+..+..+..+  .++|+|||++.+++..        ..+++|.+||..+++.+.++..+      
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            4789999999999999888877666  8999999998333331        13678999999999998887632      


Q ss_pred             cceeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeee-eecceeEeeEEecCCCCCccccccccchhhhhcccCCcc
Q 004214           74 FSRVTSMAITSDGSTLISAGR--DKVVNLWDLRDYSCKLT-VPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE  150 (768)
Q Consensus        74 ~~~V~~l~fs~d~~~L~s~~~--dg~i~vWd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (768)
                      ......++|+|||++|+++..  ++.|.+||+.+++.+.. ++.... ..+.+.|.+.                      
T Consensus       107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~----------------------  163 (361)
T 2oiz_A          107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRP----------------------  163 (361)
T ss_dssp             CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSS----------------------
T ss_pred             CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCC----------------------
Confidence            345778999999999998864  58999999999887766 543221 1122222221                      


Q ss_pred             eEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeE
Q 004214          151 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI  230 (768)
Q Consensus       151 ~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~  230 (768)
                      ..+++.                                                    +.||.+.++.....        
T Consensus       164 ~~~~~~----------------------------------------------------~~dg~~~~v~~~~~--------  183 (361)
T 2oiz_A          164 RSFMTI----------------------------------------------------CGDGGLLTINLGED--------  183 (361)
T ss_dssp             SEEEEE----------------------------------------------------ETTSSEEEEEECTT--------
T ss_pred             eeEEEE----------------------------------------------------CCCCcEEEEEECCC--------
Confidence            022222                                                    33333333322110        


Q ss_pred             EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214          231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR  310 (768)
Q Consensus       231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~  310 (768)
                                           +.......   ...+|+.           +..++. +.  ..+++.. ++..+.++.|.
T Consensus       184 ---------------------g~~~~~~~---~~~~~~~-----------~~~~~~-~~--~~~~g~~-~~~~~~~~~v~  224 (361)
T 2oiz_A          184 ---------------------GKVASQSR---SKQMFSV-----------KDDPIF-IA--PALDKDK-AHFVSYYGNVY  224 (361)
T ss_dssp             ---------------------SSEEEEEE---CCCCSCT-----------TTSCBC-SC--CEECSSE-EEEEBTTSEEE
T ss_pred             ---------------------CcEeeecc---ccceEcC-----------CCCceE-EE--ecccCCE-EEEEeCCCeEE
Confidence                                 00000000   0001111           111111 11  2344444 55556788999


Q ss_pred             EEeCCCceE--EEeeec------c----cCcEEEEEEecCCCcEEEEEe----------CCCeEEEEeCCCCCCCCcccc
Q 004214          311 LWDSESRCC--VGVGTG------H----MGAVGAVAFSKKLQNFLVSGS----------SDHTIKVWSFDGLSDDAEQPM  368 (768)
Q Consensus       311 iwd~~~~~~--~~~~~~------~----~~~v~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~  368 (768)
                      ++|+.....  ...+..      +    ......++++|+++.++++..          ..+.|.+||+...        
T Consensus       225 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--------  296 (361)
T 2oiz_A          225 SADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--------  296 (361)
T ss_dssp             EEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--------
T ss_pred             EEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC--------
Confidence            999875432  222110      0    011123689999876555544          1358999998743        


Q ss_pred             ccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC--ceEEEEeccCCCeEEEEEccCCC
Q 004214          369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKRGIWSVEFSPVDQ  435 (768)
Q Consensus       369 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~v~~s~~~~  435 (768)
                        +.......+.  +.+++|+|+|++|++++. +.|.+||..++  +.+..+..+......++++|+|+
T Consensus       297 --~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          297 --QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             --EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             --cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence              3444455555  899999999999998887 99999999999  99988877788889999999985

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.81  E-value=6.6e-18  Score=177.87  Aligned_cols=230  Identities=9%  Similarity=-0.028  Sum_probs=156.5

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEE--EecCCCcEEEEE----------------------e
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA--FSKKLQNFLVSG----------------------S  347 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~s~----------------------~  347 (768)
                      ++++++. |+.++.++.|++||+.+++.......+...+....  ++|++. +++..                      .
T Consensus        88 ~spdg~~-l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (388)
T 3pe7_A           88 LSPDDDA-LFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWKKFHEFYFTK  165 (388)
T ss_dssp             ECTTSSE-EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred             EcCCCCE-EEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCC-eeccccccCcccccccccchhhhhhccC
Confidence            5566666 77778888999999999988777776666554444  478876 44432                      2


Q ss_pred             CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCC------CcEEEEeCCCCceEEEEec
Q 004214          348 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQD------RTACVWRLPDLVSVVTFRG  420 (768)
Q Consensus       348 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~  420 (768)
                      .+..|.+||+..+.           ...+..+...+..++|+| +|+.|+....+      ..|.++|...+... .+..
T Consensus       166 ~~~~l~~~d~~~g~-----------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~  233 (388)
T 3pe7_A          166 PCCRLMRVDLKTGE-----------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKT  233 (388)
T ss_dssp             CCEEEEEEETTTCC-----------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCC
T ss_pred             CcceEEEEECCCCc-----------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-Eeee
Confidence            34678999987542           223334566789999999 99999887764      37888887665443 3433


Q ss_pred             cC--CCeEEEEEccCCCEEEEeeC-C----CcEEEEeCCCCcee--EEeecCCCc---EEEEEEEeCCCEEEEE------
Q 004214          421 HK--RGIWSVEFSPVDQVVITASG-D----KTIKIWSISDGSCL--KTFEGHTSS---VLRASFLTRGAQIVSC------  482 (768)
Q Consensus       421 ~~--~~v~~v~~s~~~~~l~t~~~-d----~~i~iwd~~~~~~~--~~~~~~~~~---v~~~~~s~~~~~l~s~------  482 (768)
                      +.  ..+..++|+|||+.|+..+. +    +.|++||+.+++..  ..+.++...   .....|+|||++|+..      
T Consensus       234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  313 (388)
T 3pe7_A          234 HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSG  313 (388)
T ss_dssp             CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---------
T ss_pred             CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccc
Confidence            43  35788999999997765433 2    23999999988743  333331110   1113799999988754      


Q ss_pred             ---eCCCcEEEEECCCCeEEEEeccCCC-----------cEEEEEEcCCCCEEEEEe-CCCcEEEEEcC
Q 004214          483 ---GADGLVKLWTVRTGECIATYDKHED-----------KIWALAVGKKTEMFATGG-SDALVNLWHDS  536 (768)
Q Consensus       483 ---~~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~l~~s~~~~~l~s~~-~dg~v~vw~~~  536 (768)
                         ..+..|++||+.+++.. .+..+..           .+.+++|+|||+.|+.++ .+|...||.+.
T Consensus       314 ~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          314 YKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             ---CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             cccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence               44668999999988764 4444554           578889999999888665 57777777654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.81  E-value=6.2e-17  Score=185.06  Aligned_cols=373  Identities=12%  Similarity=0.088  Sum_probs=230.5

Q ss_pred             CcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccce-----eEEEEEcCCCCEEEEEeCC---------C
Q 004214           31 GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSR-----VTSMAITSDGSTLISAGRD---------K   96 (768)
Q Consensus        31 ~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~-----V~~l~fs~d~~~L~s~~~d---------g   96 (768)
                      ....+++|+|||++  ++++  |++|++||+.++++...+.+|...     ...++|||||++|+.++.+         +
T Consensus        17 ~~~~~~~w~~dg~~--~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           17 LKLYSLRWISDHEY--LYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCCCEEECSSSEE--EEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             ccccccEECCCCcE--EEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            34568899999865  7776  999999999999998888877643     2448899999999998876         5


Q ss_pred             eEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeec
Q 004214           97 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK  176 (768)
Q Consensus        97 ~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~  176 (768)
                      .+.+||+.++++.........+....|+|+|..                       ++.+ .++.|++|+..++......
T Consensus        93 ~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~-----------------------la~~-~~~~i~~~~~~~~~~~~lt  148 (740)
T 4a5s_A           93 SYDIYDLNKRQLITEERIPNNTQWVTWSPVGHK-----------------------LAYV-WNNDIYVKIEPNLPSYRIT  148 (740)
T ss_dssp             EEEEEETTTTEECCSSCCCTTEEEEEECSSTTC-----------------------EEEE-ETTEEEEESSTTSCCEECC
T ss_pred             EEEEEECCCCcEEEcccCCCcceeeEECCCCCE-----------------------EEEE-ECCeEEEEECCCCceEEEc
Confidence            677999999987664444566889999999973                       3333 4678999999887433221


Q ss_pred             CCceeecccccCc---------ccceeEEEEccCCCceEEEEecCe-EEEEeeccCcccceeeEEEeeecccCCceeEEE
Q 004214          177 SSDVTISFEMDDS---------KRGFTAATVLPSNQGLLCVTADQQ-LLLYTTVEVPEKKMELILSKRLVGYNEEILDLK  246 (768)
Q Consensus       177 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~dg~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  246 (768)
                      ..... .......         ........++|++..++....|.. +..|.+.......          ++...+..+.
T Consensus       149 ~~g~~-~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~----------~~~~~~~~~~  217 (740)
T 4a5s_A          149 WTGKE-DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES----------LQYPKTVRVP  217 (740)
T ss_dssp             SCCBT-TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT----------CSSCEEEEEE
T ss_pred             CCCCc-cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCC----------CCCCcceeec
Confidence            11100 0000000         022235789999999988876544 7776654321110          2233445555


Q ss_pred             EecCCCCEEEEEeCCCcEEEEECCC---ce--eeeeee------CCccceEEEeeeeecCCCEEEEEEeC---CCeEEEE
Q 004214          247 FLGEEEQYLAVATNIEQVQVYDLSS---MS--CSYVLA------GHSEIVLCLDTCALSSGKILIVTGSK---DNSVRLW  312 (768)
Q Consensus       247 ~~~~~~~~l~~~~~~~~i~i~d~~~---~~--~~~~~~------~~~~~v~~l~~~~~~~~~~~l~~~~~---dg~i~iw  312 (768)
                      |......     .....|++||+.+   +.  ....+.      +|...+..+.  ++++++.++.....   +..|.+|
T Consensus       218 yp~~G~~-----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--wspdg~~~~~~~~r~~~~~~i~~~  290 (740)
T 4a5s_A          218 YPKAGAV-----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVT--WATQERISLQWLRRIQNYSVMDIC  290 (740)
T ss_dssp             CCBTTSC-----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEE--EEETTEEEEEEEESSTTEEEEEEE
T ss_pred             CCCCcCc-----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEE--EeCCCeEEEEEeCCCCCEEEEEEE
Confidence            5443321     1123688999998   73  222333      3777888887  77887753333322   3479999


Q ss_pred             eCCCce----EEEe--e--ecccCcEE-----EEEEecCCCcEEEEEe-CCC--eEEEEeCCCCCCCCccccccceeeEe
Q 004214          313 DSESRC----CVGV--G--TGHMGAVG-----AVAFSKKLQNFLVSGS-SDH--TIKVWSFDGLSDDAEQPMNLKAKAVV  376 (768)
Q Consensus       313 d~~~~~----~~~~--~--~~~~~~v~-----~~~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~  376 (768)
                      |+.+++    +...  +  ..|...+.     ...|+|+|+.+++..+ .+|  .|.+|++....          .. .+
T Consensus       291 d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~----------~~-~l  359 (740)
T 4a5s_A          291 DYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD----------CT-FI  359 (740)
T ss_dssp             EEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS----------CE-ES
T ss_pred             ECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc----------eE-ec
Confidence            998876    2211  1  34554443     6789999886552444 444  57777776432          11 11


Q ss_pred             eccCCCeEEEEEccCCCEEEEEeCC-----Cc--EEEEeCCCCceEEEEec----cCCCeEEEEEccCCCEEEEeeCC--
Q 004214          377 AAHGKDINSLAVAPNDSLVCTGSQD-----RT--ACVWRLPDLVSVVTFRG----HKRGIWSVEFSPVDQVVITASGD--  443 (768)
Q Consensus       377 ~~~~~~i~~~~~s~~~~~l~~~~~d-----g~--i~i~d~~~~~~~~~~~~----~~~~v~~v~~s~~~~~l~t~~~d--  443 (768)
                      ......+..+. .++++.|+..+..     +.  |+..++..+.....+..    .......+.|+|++++++.....  
T Consensus       360 T~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~  438 (740)
T 4a5s_A          360 TKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG  438 (740)
T ss_dssp             CCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS
T ss_pred             ccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCC
Confidence            22234455443 2446555544432     33  44445544433323332    23578899999999987765543  


Q ss_pred             -CcEEEEeCCCCceeEEee
Q 004214          444 -KTIKIWSISDGSCLKTFE  461 (768)
Q Consensus       444 -~~i~iwd~~~~~~~~~~~  461 (768)
                       ..+.+++..+++.+..+.
T Consensus       439 ~p~~~l~~~~~~~~~~~l~  457 (740)
T 4a5s_A          439 LPLYTLHSSVNDKGLRVLE  457 (740)
T ss_dssp             SCEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEec
Confidence             468889988887666554

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.80  E-value=1.4e-17  Score=173.28  Aligned_cols=274  Identities=11%  Similarity=0.068  Sum_probs=182.5

Q ss_pred             EEEEEeCC--CcEEEEEC--CCceeeeeee---CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC-CceEEEeeec
Q 004214          254 YLAVATNI--EQVQVYDL--SSMSCSYVLA---GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-SRCCVGVGTG  325 (768)
Q Consensus       254 ~l~~~~~~--~~i~i~d~--~~~~~~~~~~---~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~  325 (768)
                      .+++|+..  +.|.+|++  .+++....-.   .....+..++  +.++++. +++++.+ .|.+|++. +++.......
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a--~spdg~~-l~~~~~~-~v~~~~~~~~g~~~~~~~~   79 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMT--FDHERKN-IYGAAMK-KWSSFAVKSPTEIVHEASH   79 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEE--ECTTSSE-EEEEEBT-EEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEE--ECCCCCE-EEEEccc-eEEEEEECCCCCEEEeeEe
Confidence            34555542  46777654  5555432211   2233455565  6677775 7777777 99999997 7766543321


Q ss_pred             c-cCcEEEEEEecCCCc-EEEEEe-------------CCCeEEEEeCCCCCCCCccccccceeeEe-eccCCCeEEEEEc
Q 004214          326 H-MGAVGAVAFSKKLQN-FLVSGS-------------SDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVA  389 (768)
Q Consensus       326 ~-~~~v~~~~~~~~~~~-~l~s~~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s  389 (768)
                      . .+...+++|+|+++. +++++.             .+|.+.+|++.....      ........ ..+...+.+++|+
T Consensus        80 ~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~------~~~~~~~~~~~~~~~~~~~~~s  153 (365)
T 1jof_A           80 PIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK------LEKNVQNYEYQENTGIHGMVFD  153 (365)
T ss_dssp             ECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC------EEEEEEEEECCTTCCEEEEEEC
T ss_pred             ecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc------CcceEeeEEeCCCCcceEEEEC
Confidence            1 123456889999774 344543             689999999863211      00011111 1245678999999


Q ss_pred             cCCCEEEEEeC-CCcEEEEeCC-CCceE--EEEe--ccCCCeEEEEEccCCCEEEEeeC-CCcEEEEeCC--CCcee---
Q 004214          390 PNDSLVCTGSQ-DRTACVWRLP-DLVSV--VTFR--GHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS--DGSCL---  457 (768)
Q Consensus       390 ~~~~~l~~~~~-dg~i~i~d~~-~~~~~--~~~~--~~~~~v~~v~~s~~~~~l~t~~~-d~~i~iwd~~--~~~~~---  457 (768)
                      |+|++++++.. ++.|++|++. +++..  ..+.  .|...+..++|+|+|+++++++. ++.|.+|++.  +++..   
T Consensus       154 pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~  233 (365)
T 1jof_A          154 PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTH  233 (365)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred             CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEcc
Confidence            99998887764 6799999998 66543  3333  24567899999999999888775 6899999865  56543   


Q ss_pred             EEee-------cCCC------cEEEEE-EEeCCCEEEEEeCCC------cEEEEECC-CCeEEE---EeccCCCcEEEEE
Q 004214          458 KTFE-------GHTS------SVLRAS-FLTRGAQIVSCGADG------LVKLWTVR-TGECIA---TYDKHEDKIWALA  513 (768)
Q Consensus       458 ~~~~-------~~~~------~v~~~~-~s~~~~~l~s~~~dg------~i~iwd~~-~~~~~~---~~~~~~~~v~~l~  513 (768)
                      ..+.       +|..      .+..++ |+|||++|++++.+.      .|.+|++. +++...   ....+...+..++
T Consensus       234 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a  313 (365)
T 1jof_A          234 HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNA  313 (365)
T ss_dssp             EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCC
T ss_pred             ceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccce
Confidence            2222       1222      588999 999999988776432      89999996 676543   2333455567889


Q ss_pred             EcC---CCCEEEEEeCC-CcEEEEEcCC
Q 004214          514 VGK---KTEMFATGGSD-ALVNLWHDST  537 (768)
Q Consensus       514 ~s~---~~~~l~s~~~d-g~v~vw~~~~  537 (768)
                      |+|   +|++|++++.+ +.|.+|++..
T Consensus       314 ~sp~~~dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          314 VSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             EEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             ecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence            999   89999998864 8999999765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.79  E-value=2.1e-15  Score=163.70  Aligned_cols=338  Identities=11%  Similarity=0.068  Sum_probs=226.6

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECC--CCeeEEEecCccceeEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL--AKKCVATLDKHFSRVTS   79 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~--~~~~~~~l~~h~~~V~~   79 (768)
                      ++++...++.|.++|..+++.+..+.. ...+..++|+|||++  +++++.|+.|.+||+.  +++.+.++.... ....
T Consensus       169 ~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~--lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~  244 (567)
T 1qks_A          169 FSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRY--LFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARS  244 (567)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCE--EEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEE
T ss_pred             EEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCE--EEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCce
Confidence            567788899999999999999988874 346779999999998  7777899999999996  888888887544 4679


Q ss_pred             EEEc----CCCCEEEEEeC-CCeEEEEECCCCeeeeeeecceeE-eeEEecCCCCCccccccccchhhhhcccCCcceEE
Q 004214           80 MAIT----SDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEMV-EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF  153 (768)
Q Consensus        80 l~fs----~d~~~L~s~~~-dg~i~vWd~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (768)
                      ++|+    |||++++++.. ++.|.++|..+.+.+..++..... ....+.|                            
T Consensus       245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p----------------------------  296 (567)
T 1qks_A          245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHP----------------------------  296 (567)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEES----------------------------
T ss_pred             eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccC----------------------------
Confidence            9999    69999887765 589999999998877766532110 0000000                            


Q ss_pred             EEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEe
Q 004214          154 ITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK  233 (768)
Q Consensus       154 ~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~  233 (768)
                                                                                                      
T Consensus       297 --------------------------------------------------------------------------------  296 (567)
T 1qks_A          297 --------------------------------------------------------------------------------  296 (567)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee-CCccceEEEeeeeecCCCEEEEEEeCCCeEEEE
Q 004214          234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW  312 (768)
Q Consensus       234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iw  312 (768)
                           ...+..+..++....+++.....|.|.++|..+........ .......++.  +.+++++++++...++.|.++
T Consensus       297 -----~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~--~~pdgr~~~va~~~sn~V~Vi  369 (567)
T 1qks_A          297 -----EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGG--LDGSHRYFITAANARNKLVVI  369 (567)
T ss_dssp             -----CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEE--ECTTSCEEEEEEGGGTEEEEE
T ss_pred             -----CCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCce--ECCCCCEEEEEeCCCCeEEEE
Confidence                 00112222222222333334445777777766543221111 1122334444  778888877777788999999


Q ss_pred             eCCCceEEEeeec-----ccCcEEEEEEecCCCcEEEEEe-CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEE
Q 004214          313 DSESRCCVGVGTG-----HMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL  386 (768)
Q Consensus       313 d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  386 (768)
                      |+.+++.+..+..     |.+.-.. -++|++..+++++. .++.|.++|.......   ....+...........-..+
T Consensus       370 D~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~---~~~~kvv~~i~~~g~g~~~i  445 (567)
T 1qks_A          370 DTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHP---DNAWKILDSFPALGGGSLFI  445 (567)
T ss_dssp             ETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCT---TTBTSEEEEEECSCSCCCCE
T ss_pred             ECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCc---cccCEEEEEEecCCCCCEEE
Confidence            9999988766543     3322222 25787665556554 5689999998753211   11233444444443333557


Q ss_pred             EEccCCCEEEEEeC-------CCcEEEEeCCCC-----ce-EEEEec--------cCCCeEEEEEccCCCEEEEee----
Q 004214          387 AVAPNDSLVCTGSQ-------DRTACVWRLPDL-----VS-VVTFRG--------HKRGIWSVEFSPVDQVVITAS----  441 (768)
Q Consensus       387 ~~s~~~~~l~~~~~-------dg~i~i~d~~~~-----~~-~~~~~~--------~~~~v~~v~~s~~~~~l~t~~----  441 (768)
                      ..+|+++++.+...       ...|.++|+.+.     .. ...+..        ....+..+.|+|+|+.+..+.    
T Consensus       446 ~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~  525 (567)
T 1qks_A          446 KTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGK  525 (567)
T ss_dssp             ECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCT
T ss_pred             EeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCC
Confidence            88999999998763       359999999876     21 233321        245788999999999877763    


Q ss_pred             -CCCcEEEEeCCCCceeEEeec
Q 004214          442 -GDKTIKIWSISDGSCLKTFEG  462 (768)
Q Consensus       442 -~d~~i~iwd~~~~~~~~~~~~  462 (768)
                       .++.|.|+|..+++.+.++..
T Consensus       526 ~~~~~i~v~D~~t~~~~~~i~~  547 (567)
T 1qks_A          526 DQESALVVVDDKTLELKHVIKD  547 (567)
T ss_dssp             TSCCEEEEEETTTTEEEEEECC
T ss_pred             CCCCcEEEEECCCceEEEEeCC
Confidence             379999999999999888874

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.78  E-value=1.9e-15  Score=164.06  Aligned_cols=332  Identities=14%  Similarity=0.116  Sum_probs=221.8

Q ss_pred             EeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeeeeeeecc
Q 004214           38 FHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR--DYSCKLTVPTY  115 (768)
Q Consensus        38 ~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~--~~~~~~~~~~~  115 (768)
                      +..|....++++...+++|.+||..+++.+.++.... .+..+.|||||+++++++.|+.|.+||+.  +++.+.+++..
T Consensus       161 ~~~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G  239 (567)
T 1qks_A          161 NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG  239 (567)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred             cccCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC
Confidence            3344344567888889999999999999999887443 46799999999999999999999999995  76666555543


Q ss_pred             eeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeE
Q 004214          116 EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTA  195 (768)
Q Consensus       116 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (768)
                      .....+.+++-                                                                     
T Consensus       240 ~~P~~ia~s~~---------------------------------------------------------------------  250 (567)
T 1qks_A          240 SEARSIETSKM---------------------------------------------------------------------  250 (567)
T ss_dssp             SEEEEEEECCS---------------------------------------------------------------------
T ss_pred             CCCceeEEccc---------------------------------------------------------------------
Confidence            33344444410                                                                     


Q ss_pred             EEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEe-CCCcEEEEECCCcee
Q 004214          196 ATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT-NIEQVQVYDLSSMSC  274 (768)
Q Consensus       196 ~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~  274 (768)
                                                                          .++++++++++. .++.+.++|..+.+.
T Consensus       251 ----------------------------------------------------~~pDGk~l~v~n~~~~~v~ViD~~t~~~  278 (567)
T 1qks_A          251 ----------------------------------------------------EGWEDKYAIAGAYWPPQYVIMDGETLEP  278 (567)
T ss_dssp             ----------------------------------------------------TTCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred             ----------------------------------------------------cCCCCCEEEEEEccCCeEEEEECCCCcE
Confidence                                                                002333333322 235566666655555


Q ss_pred             eeeeeCC----------cc-ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee-cccCcEEEEEEecCCCcE
Q 004214          275 SYVLAGH----------SE-IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNF  342 (768)
Q Consensus       275 ~~~~~~~----------~~-~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~  342 (768)
                      +..+...          .. .+..+.  .++.+..+++....+|.|.++|..+...+.... ........+.|+|+++.+
T Consensus       279 ~~~i~~~~~~~~~~~~~p~~rva~i~--~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~  356 (567)
T 1qks_A          279 KKIQSTRGMTYDEQEYHPEPRVAAIL--ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF  356 (567)
T ss_dssp             EEEEECCEECTTTCCEESCCCEEEEE--ECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE
T ss_pred             EEEEeccccccccccccCCCceEEEE--EcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEE
Confidence            5444321          11 344443  455566667777778999999988754322211 233456788999998866


Q ss_pred             EEEEeCCCeEEEEeCCCCCCCCccccccceeeEe-----eccCCCeEEEEEccCCC-EEEEEe-CCCcEEEEeCCC----
Q 004214          343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-----AAHGKDINSLAVAPNDS-LVCTGS-QDRTACVWRLPD----  411 (768)
Q Consensus       343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~i~d~~~----  411 (768)
                      +++...++.|.++|+....          .....     ..|...-..+ ++|++. ..+++. .++.|.++|..+    
T Consensus       357 ~va~~~sn~V~ViD~~t~k----------l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~  425 (567)
T 1qks_A          357 ITAANARNKLVVIDTKEGK----------LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP  425 (567)
T ss_dssp             EEEEGGGTEEEEEETTTTE----------EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred             EEEeCCCCeEEEEECCCCc----------EEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc
Confidence            6777788999999998542          11111     1233222222 578744 444443 468999999987    


Q ss_pred             ---CceEEEEeccCCCeEEEEEccCCCEEEEeeC-------CCcEEEEeCCCC-----c-eeEEee--------cCCCcE
Q 004214          412 ---LVSVVTFRGHKRGIWSVEFSPVDQVVITASG-------DKTIKIWSISDG-----S-CLKTFE--------GHTSSV  467 (768)
Q Consensus       412 ---~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~-------d~~i~iwd~~~~-----~-~~~~~~--------~~~~~v  467 (768)
                         .+.+.++......-..+.++|+++++.+...       ..+|.++|+.+.     . ....+.        .....+
T Consensus       426 ~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  505 (567)
T 1qks_A          426 DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRV  505 (567)
T ss_dssp             TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEE
T ss_pred             cccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcce
Confidence               6788888765544455788999999988663       359999999876     2 223332        123578


Q ss_pred             EEEEEEeCCCEEEEEe-----CCCcEEEEECCCCeEEEEecc
Q 004214          468 LRASFLTRGAQIVSCG-----ADGLVKLWTVRTGECIATYDK  504 (768)
Q Consensus       468 ~~~~~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~  504 (768)
                      ..+.|+++|+++..+.     .++.|.|+|.++++.+.++..
T Consensus       506 ~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~  547 (567)
T 1qks_A          506 VQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD  547 (567)
T ss_dssp             EEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             EeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence            8999999999887663     378999999999999988874

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.78  E-value=6.7e-18  Score=178.35  Aligned_cols=320  Identities=12%  Similarity=0.012  Sum_probs=197.0

Q ss_pred             EEEEECCCCEEEEEEEcCCCc-----EEEEEEeeCCCccEEEEEeC---CCcEEEEECCCCeeEEEecCccceeEEEEEc
Q 004214           12 VLVWDVDGGFCTHYFKGHKGV-----VSSILFHPDTDKSLLFSGSD---DATVRVWDLLAKKCVATLDKHFSRVTSMAIT   83 (768)
Q Consensus        12 i~vwd~~~~~~~~~l~gh~~~-----V~~l~~spd~~~~~l~sg~~---dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs   83 (768)
                      ...+|..++..+..+..+...     +.+++|||||++  |+....   +..|.+||+.+++......++......+.|+
T Consensus        12 ~~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~--l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~s   89 (396)
T 3c5m_A           12 ETFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKK--LLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIS   89 (396)
T ss_dssp             EEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCE--EEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEEC
T ss_pred             heeecCCCCcceEEEecCCCCccceeeecCcCCCCCCE--EEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceEC
Confidence            345688899888888776554     778999999987  555533   2468899998887655444333333448899


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEE
Q 004214           84 SDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVR  163 (768)
Q Consensus        84 ~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~  163 (768)
                      |||++|+.++.++.|.+||+.+++..........     +.+                                      
T Consensus        90 pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~-----~~~--------------------------------------  126 (396)
T 3c5m_A           90 TDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE-----WKG--------------------------------------  126 (396)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT-----EEE--------------------------------------
T ss_pred             CCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc-----cCC--------------------------------------
Confidence            9999999999999999999987653322211000     000                                      


Q ss_pred             EEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCcee
Q 004214          164 MWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEIL  243 (768)
Q Consensus       164 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  243 (768)
                                                                                                      
T Consensus       127 --------------------------------------------------------------------------------  126 (396)
T 3c5m_A          127 --------------------------------------------------------------------------------  126 (396)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEE-----eCCCeEEEEeCCCce
Q 004214          244 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG-----SKDNSVRLWDSESRC  318 (768)
Q Consensus       244 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~  318 (768)
                             ++..++....++...+|..                 ...  +.+++.. ++.+     ..+..|.+||+.+++
T Consensus       127 -------~g~~l~~~~~~~~~~~~~~-----------------~~~--~spdg~~-~~~~~~~~~~~~~~l~~~d~~~g~  179 (396)
T 3c5m_A          127 -------YGTWVANSDCTKLVGIEIL-----------------KRD--WQPLTSW-EKFAEFYHTNPTCRLIKVDIETGE  179 (396)
T ss_dssp             -------EEEEEECTTSSEEEEEEEE-----------------GGG--CCCCCSH-HHHHHHHHTCCCEEEEEEETTTCC
T ss_pred             -------CCCEEEeccCCcccccccc-----------------ccc--cCCCCcc-eeeeeeccCCCcceEEEEECCCCc
Confidence                   0001111111111111110                 001  3344443 2222     345678889988877


Q ss_pred             EEEeeecccCcEEEEEEec-CCCcEEEEEeCC------CeEEEEeCCCCCCCCccccccceeeEeecc-CCCeEEEEEcc
Q 004214          319 CVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSD------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAH-GKDINSLAVAP  390 (768)
Q Consensus       319 ~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~  390 (768)
                      ..... .+...+..+.|+| ++. .++..+.+      ..|.+|++....          ........ ...+..++|+|
T Consensus       180 ~~~~~-~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~----------~~~l~~~~~~~~~~~~~~sp  247 (396)
T 3c5m_A          180 LEVIH-QDTAWLGHPIYRPFDDS-TVGFCHEGPHDLVDARMWLVNEDGSN----------VRKIKEHAEGESCTHEFWIP  247 (396)
T ss_dssp             EEEEE-EESSCEEEEEEETTEEE-EEEEEECSCSSSCSCCCEEEETTSCC----------CEESSCCCTTEEEEEEEECT
T ss_pred             EEeec-cCCcccccceECCCCCC-EEEEEecCCCCCCCceEEEEECCCCc----------eeEeeccCCCccccceEECC
Confidence            65544 4667789999999 655 34444433      357888875431          11111111 23577899999


Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCceEEEEeccCCCeEEEEEcc-CCCEEEEee----------------CCCcEEE
Q 004214          391 NDSLVCTGSQD-----RTACVWRLPDLVSVVTFRGHKRGIWSVEFSP-VDQVVITAS----------------GDKTIKI  448 (768)
Q Consensus       391 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~t~~----------------~d~~i~i  448 (768)
                      +|+.|+.++.+     +.|++||+.+++....... . ... +.|+| +|+++++++                .++.|++
T Consensus       248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~  324 (396)
T 3c5m_A          248 DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYV  324 (396)
T ss_dssp             TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEE
T ss_pred             CCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEE
Confidence            99988777544     4499999988765443221 1 233 89999 999888764                3478999


Q ss_pred             EeCCCCceeEEeecCCC-----------cEEEEEEEeCCCEEEEEeC-CCc--EEEEECCCCeEE
Q 004214          449 WSISDGSCLKTFEGHTS-----------SVLRASFLTRGAQIVSCGA-DGL--VKLWTVRTGECI  499 (768)
Q Consensus       449 wd~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~~-dg~--i~iwd~~~~~~~  499 (768)
                      ||+.+++.. .+..+..           .+..+.|+|+|++|+.++. ++.  |.++++.+++..
T Consensus       325 ~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~  388 (396)
T 3c5m_A          325 LNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKH  388 (396)
T ss_dssp             EETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred             EecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccc
Confidence            999887753 4444544           2566889999998877765 454  444455555443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.77  E-value=2e-17  Score=174.63  Aligned_cols=248  Identities=9%  Similarity=-0.018  Sum_probs=156.3

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCc
Q 004214          250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA  329 (768)
Q Consensus       250 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  329 (768)
                      ++++.|+.++.++.|++||+.+++.......+..        +.+++.. ++..+.++...+|.                
T Consensus        90 pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--------~~~~g~~-l~~~~~~~~~~~~~----------------  144 (396)
T 3c5m_A           90 TDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE--------WKGYGTW-VANSDCTKLVGIEI----------------  144 (396)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEEEEEE-EECTTSSEEEEEEE----------------
T ss_pred             CCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc--------cCCCCCE-EEeccCCccccccc----------------
Confidence            4566677777767788888877765544443333        1222322 44444443333332                


Q ss_pred             EEEEEEecCCCcEEEEE----eCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCC---
Q 004214          330 VGAVAFSKKLQNFLVSG----SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQD---  401 (768)
Q Consensus       330 v~~~~~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d---  401 (768)
                       ..+.++|+++.+++..    ..+..|.+||+..+.          . .....+...+..+.|+| +++.|+..+.+   
T Consensus       145 -~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~----------~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~  212 (396)
T 3c5m_A          145 -LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE----------L-EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHD  212 (396)
T ss_dssp             -EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC----------E-EEEEEESSCEEEEEEETTEEEEEEEEECSCSS
T ss_pred             -cccccCCCCcceeeeeeccCCCcceEEEEECCCCc----------E-EeeccCCcccccceECCCCCCEEEEEecCCCC
Confidence             1234678876432222    456789999987532          1 12224667789999999 78877776654   


Q ss_pred             ---CcEEEEeCCCCceEEEEecc--CCCeEEEEEccCCCEEEEeeCC-----CcEEEEeCCCCceeEEeecCCCcEEEEE
Q 004214          402 ---RTACVWRLPDLVSVVTFRGH--KRGIWSVEFSPVDQVVITASGD-----KTIKIWSISDGSCLKTFEGHTSSVLRAS  471 (768)
Q Consensus       402 ---g~i~i~d~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~t~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~  471 (768)
                         ..|.+||+..++... +..+  ...+..++|+|+|+.|+.++.+     +.|++||+.+++...... ... .. +.
T Consensus       213 ~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~  288 (396)
T 3c5m_A          213 LVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HL  288 (396)
T ss_dssp             SCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EE
T ss_pred             CCCceEEEEECCCCceeE-eeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CC
Confidence               358889987655333 3223  2357889999999987776543     459999998887544332 112 23 89


Q ss_pred             EEe-CCCEEEEEe----------------CCCcEEEEECCCCeEEEEeccCCC-----------cEEEEEEcCCCCEEEE
Q 004214          472 FLT-RGAQIVSCG----------------ADGLVKLWTVRTGECIATYDKHED-----------KIWALAVGKKTEMFAT  523 (768)
Q Consensus       472 ~s~-~~~~l~s~~----------------~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~l~~s~~~~~l~s  523 (768)
                      |+| +|+++++++                .++.|++||+.+++.. .+..+..           .+..++|+|+|+.|+.
T Consensus       289 ~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  367 (396)
T 3c5m_A          289 MSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLF  367 (396)
T ss_dssp             EECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred             ccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEE
Confidence            999 999888765                3468999999888753 3433443           2566789999998887


Q ss_pred             EeC-CCcEEEEE--cCCHH
Q 004214          524 GGS-DALVNLWH--DSTAA  539 (768)
Q Consensus       524 ~~~-dg~v~vw~--~~~~~  539 (768)
                      ++. ++...+|.  +.++.
T Consensus       368 ~s~~~~~~~l~~~~~~~~~  386 (396)
T 3c5m_A          368 TSDFEGVPAIYIADVPESY  386 (396)
T ss_dssp             EECTTSSCEEEEEECCTTC
T ss_pred             EecCCCCceEEEEEEcccc
Confidence            764 55555554  44443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.76  E-value=7.3e-16  Score=176.23  Aligned_cols=356  Identities=10%  Similarity=0.058  Sum_probs=212.9

Q ss_pred             eeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeeccee----E--eeEEecCCCCCccccccccchhhhhcccCCc
Q 004214           76 RVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM----V--EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL  149 (768)
Q Consensus        76 ~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~----v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (768)
                      ...+++|+|||++++++  |+.|++||+.++++...+..+..    +  ..+.++|++.                     
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~---------------------   74 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ---------------------   74 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSS---------------------
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCC---------------------
Confidence            46689999999988886  89999999999987766554331    1  2256677765                     


Q ss_pred             ceEEEEeeCC---------cEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeec
Q 004214          150 EIHFITVGER---------GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV  220 (768)
Q Consensus       150 ~~~~~~~~~~---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~  220 (768)
                        .++.++.+         +.+.+||+.++...                                               
T Consensus        75 --~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-----------------------------------------------  105 (740)
T 4a5s_A           75 --FILLEYNYVKQWRHSYTASYDIYDLNKRQLI-----------------------------------------------  105 (740)
T ss_dssp             --EEEEEEEEEECSSSCEEEEEEEEETTTTEEC-----------------------------------------------
T ss_pred             --EEEEEECCeeeEEEccceEEEEEECCCCcEE-----------------------------------------------
Confidence              33333332         45556666665321                                               


Q ss_pred             cCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeee-eCCccce--------------
Q 004214          221 EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL-AGHSEIV--------------  285 (768)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~v--------------  285 (768)
                                   .+..+...+...+|+| +++.+|.+. ++.|++|+..++...+.. .++...+              
T Consensus       106 -------------~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A          106 -------------TEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             -------------CSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             -------------EcccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence                         1223344566666664 555556554 477888888776654322 2222222              


Q ss_pred             ---EEEeeeeecCCCEEEEEEe-CCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCC--
Q 004214          286 ---LCLDTCALSSGKILIVTGS-KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG--  359 (768)
Q Consensus       286 ---~~l~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--  359 (768)
                         ..+.  ++|+++. |+.++ .++.+.+|++......   ..+...+..+.+.+.|..     .....|.+||+..  
T Consensus       171 ~~~~~~~--wSpDg~~-la~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~yp~~G~~-----~~~~~l~v~d~~~~~  239 (740)
T 4a5s_A          171 SAYSALW--WSPNGTF-LAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV-----NPTVKFFVVNTDSLS  239 (740)
T ss_dssp             SSSBCEE--ECTTSSE-EEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSC-----CCEEEEEEEETTSCC
T ss_pred             CCCcceE--ECCCCCE-EEEEEEcccCCceEEEEeecCC---CCCCCcceeecCCCCcCc-----CCeeEEEEEECCCCC
Confidence               1243  7788877 55554 4555888875311000   024456677777776642     1223688999986  


Q ss_pred             -CCCCCccccccceeeEe-----eccCCCeEEEEEccCCCEEEEEeC----CCcEEEEeCCCCc----e--EEEE--ecc
Q 004214          360 -LSDDAEQPMNLKAKAVV-----AAHGKDINSLAVAPNDSLVCTGSQ----DRTACVWRLPDLV----S--VVTF--RGH  421 (768)
Q Consensus       360 -~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~----~--~~~~--~~~  421 (768)
                       +...       ......     ..|...+..++|+|||+.++....    +..|.+||+.+++    +  +..+  .+|
T Consensus       240 ~~~~~-------~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~  312 (740)
T 4a5s_A          240 SVTNA-------TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST  312 (740)
T ss_dssp             SSSCC-------CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS
T ss_pred             CCCcc-------eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC
Confidence             3110       111111     136677899999999997766543    2369999998876    1  1122  445


Q ss_pred             CCCeE-----EEEEccCCCEEE-EeeC-C--CcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCC-----C-
Q 004214          422 KRGIW-----SVEFSPVDQVVI-TASG-D--KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-----G-  486 (768)
Q Consensus       422 ~~~v~-----~v~~s~~~~~l~-t~~~-d--~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g-  486 (768)
                      ...|.     ...|+|||+.++ ..+. +  ..|++||+..+.+. .+......+..+.. ++++.|+..+..     + 
T Consensus       313 ~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~  390 (740)
T 4a5s_A          313 TGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGG  390 (740)
T ss_dssp             SSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTC
T ss_pred             CceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCce
Confidence            55554     789999999877 5553 3  46888998766554 44434556665543 556665544432     3 


Q ss_pred             -cEEEEECCCCeEEEEecc----CCCcEEEEEEcCCCCEEEEEeCC---CcEEEEEcCCH
Q 004214          487 -LVKLWTVRTGECIATYDK----HEDKIWALAVGKKTEMFATGGSD---ALVNLWHDSTA  538 (768)
Q Consensus       487 -~i~iwd~~~~~~~~~~~~----~~~~v~~l~~s~~~~~l~s~~~d---g~v~vw~~~~~  538 (768)
                       .|+..++..+.....+..    ....+....|||++++++.....   ..+.+++..++
T Consensus       391 ~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~  450 (740)
T 4a5s_A          391 RNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND  450 (740)
T ss_dssp             BEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred             eEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence             344445544443323331    23568889999999987755433   35677776544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.75  E-value=9.3e-16  Score=159.53  Aligned_cols=243  Identities=11%  Similarity=0.043  Sum_probs=166.4

Q ss_pred             CceeEEEEecCCCCEEEEEeCCCcEEEEECC-Cceeeeeee--CCccceEEEeeeeecCCCE-EEEEEe-----------
Q 004214          240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLS-SMSCSYVLA--GHSEIVLCLDTCALSSGKI-LIVTGS-----------  304 (768)
Q Consensus       240 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~~--~~~~~v~~l~~~~~~~~~~-~l~~~~-----------  304 (768)
                      ..+..++|++ +++++++++.+ .|.+|++. +++......  .+. .+.++.  +.++++. +++++.           
T Consensus        40 ~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g-~~~~~~--~spdg~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           40 EPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG-HPRAND--ADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             CCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS-SGGGGC--TTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC-CCccEE--ECCCCCEEEEEEecCCcceecccee
Confidence            4577888875 66778888776 99999987 776543322  111 223343  6666664 344542           


Q ss_pred             --CCCeEEEEeCC-CceEEEeee----cccCcEEEEEEecCCCcEEEEEe-CCCeEEEEeCC-CCCCCCccccccceeeE
Q 004214          305 --KDNSVRLWDSE-SRCCVGVGT----GHMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWSFD-GLSDDAEQPMNLKAKAV  375 (768)
Q Consensus       305 --~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~~~~  375 (768)
                        .+|.+.+|++. .++....+.    .+...+.+++|+|+|+. ++++. .++.|.+|++. .+.        ......
T Consensus       115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~-l~~~~~~~~~v~~~~~~~~g~--------~~~~~~  185 (365)
T 1jof_A          115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY-LYSADLTANKLWTHRKLASGE--------VELVGS  185 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE-EEEEETTTTEEEEEEECTTSC--------EEEEEE
T ss_pred             ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE-EEEEcCCCCEEEEEEECCCCC--------EEEeee
Confidence              68999999997 465544333    24567999999999874 55544 57899999987 321        111112


Q ss_pred             ee--ccCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCC--CCceE---EEEec-------cCC------CeEEEE-EccC
Q 004214          376 VA--AHGKDINSLAVAPNDSLVCTGSQ-DRTACVWRLP--DLVSV---VTFRG-------HKR------GIWSVE-FSPV  433 (768)
Q Consensus       376 ~~--~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~--~~~~~---~~~~~-------~~~------~v~~v~-~s~~  433 (768)
                      ..  .|...+..++|+|+|+++++++. ++.|.+|++.  +++..   ..+..       |..      .+..++ |+|+
T Consensus       186 ~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spd  265 (365)
T 1jof_A          186 VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFS  265 (365)
T ss_dssp             EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT
T ss_pred             EecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCC
Confidence            22  24567899999999999888775 6899999765  45542   12221       222      488999 9999


Q ss_pred             CCEEEEeeCCC------cEEEEeCC-CCceeE---EeecCCCcEEEEEEEe---CCCEEEEEeCC-CcEEEEECCCC
Q 004214          434 DQVVITASGDK------TIKIWSIS-DGSCLK---TFEGHTSSVLRASFLT---RGAQIVSCGAD-GLVKLWTVRTG  496 (768)
Q Consensus       434 ~~~l~t~~~d~------~i~iwd~~-~~~~~~---~~~~~~~~v~~~~~s~---~~~~l~s~~~d-g~i~iwd~~~~  496 (768)
                      |++|+++..+.      +|.+|++. +++...   ....+...+..++|+|   +|++|++++.+ +.|.+|++...
T Consensus       266 G~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          266 GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            99888776432      89999996 566543   2334555567789999   89999998874 89999998765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.75  E-value=1.1e-15  Score=156.22  Aligned_cols=229  Identities=10%  Similarity=0.107  Sum_probs=171.4

Q ss_pred             CeEEEEeCCCceEEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214          307 NSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS  385 (768)
Q Consensus       307 g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  385 (768)
                      +.|.+||..+++.+..+. ++......++++|++. ++++...++.|+.|+......................+-..+..
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~  147 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTD  147 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred             CcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcE
Confidence            579999999888776654 4556789999999977 78888889999999976431000000000000000233456889


Q ss_pred             EEEcc-CCCEEEEEe-CCCcEEEEeCCCCceEEEEeccC----------CCeEEEEEccC-CCEEEEeeCCCcEEEEeCC
Q 004214          386 LAVAP-NDSLVCTGS-QDRTACVWRLPDLVSVVTFRGHK----------RGIWSVEFSPV-DQVVITASGDKTIKIWSIS  452 (768)
Q Consensus       386 ~~~s~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~----------~~v~~v~~s~~-~~~l~t~~~d~~i~iwd~~  452 (768)
                      ++++| ++.++++.+ .++.|++|+ .++..+..+....          .....++++|+ +.++++...++.|++||..
T Consensus       148 ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~  226 (329)
T 3fvz_A          148 VAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD  226 (329)
T ss_dssp             EEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence            99999 788888876 689999999 5677776664322          34889999998 7888888889999999998


Q ss_pred             CCceeEEee--cCCCcEEEEEEEe------CCCEEEEEeCCCcEEEEECCCCeEEEEec---cCCCcEEEEEEcCCCCEE
Q 004214          453 DGSCLKTFE--GHTSSVLRASFLT------RGAQIVSCGADGLVKLWTVRTGECIATYD---KHEDKIWALAVGKKTEMF  521 (768)
Q Consensus       453 ~~~~~~~~~--~~~~~v~~~~~s~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l  521 (768)
                      +|+.+..+.  .+...+..++|+|      +|+..++...+..|++|+..+++.+..+.   .+...+.+++++|+|..+
T Consensus       227 ~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~ly  306 (329)
T 3fvz_A          227 TKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVY  306 (329)
T ss_dssp             TCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEE
T ss_pred             CCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEE
Confidence            899998884  4566788999998      33333333345589999999999999883   567779999999999888


Q ss_pred             EEEeCCCcEEEEEcCC
Q 004214          522 ATGGSDALVNLWHDST  537 (768)
Q Consensus       522 ~s~~~dg~v~vw~~~~  537 (768)
                      ++...++.|++|++..
T Consensus       307 vad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          307 IGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEESSSCCEEEEEEEE
T ss_pred             EEECCCCEEEEEeCCc
Confidence            8999999999999753

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.74  E-value=4.2e-15  Score=148.89  Aligned_cols=238  Identities=12%  Similarity=0.188  Sum_probs=175.9

Q ss_pred             CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee------cccCcEEEEEEe-cCCCcEEEEEeC-CCe
Q 004214          280 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT------GHMGAVGAVAFS-KKLQNFLVSGSS-DHT  351 (768)
Q Consensus       280 ~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~~l~s~~~-dg~  351 (768)
                      ++...+.+++  +.+++. ++++...++.|.+||.. +..+..+.      ++...+..+++. ++ ..++++... ++.
T Consensus        27 g~~~~p~~v~--~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~-g~l~v~~~~~~~~  101 (286)
T 1q7f_A           27 GQFTEPSGVA--VNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNS-GDIIVTERSPTHQ  101 (286)
T ss_dssp             TCBSCEEEEE--ECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTT-TEEEEEECGGGCE
T ss_pred             CccCCCceEE--ECCCCC-EEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCC-CeEEEEcCCCCCE
Confidence            3445567775  556655 47777889999999987 54555443      244578899995 55 445555533 899


Q ss_pred             EEEEeCCCCCCCCccccccceeeEe-eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe--ccCCCeEEE
Q 004214          352 IKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSV  428 (768)
Q Consensus       352 i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~v  428 (768)
                      |.+|+....           ..... ..+...+.+++++|+|+++++...++.|.+||. +++.+..+.  .+...+..+
T Consensus       102 i~~~d~~g~-----------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i  169 (286)
T 1q7f_A          102 IQIYNQYGQ-----------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGV  169 (286)
T ss_dssp             EEEECTTSC-----------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEE
T ss_pred             EEEECCCCc-----------EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEE
Confidence            999994321           11111 223456899999999998888778899999996 455555554  345578999


Q ss_pred             EEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC--CCcEEEEEEEeCCCEEEEEeCCC-cEEEEECCCCeEEEEeccC
Q 004214          429 EFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH--TSSVLRASFLTRGAQIVSCGADG-LVKLWTVRTGECIATYDKH  505 (768)
Q Consensus       429 ~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~  505 (768)
                      +++|+|+++++...++.|++||. +++.+..+..+  ...+..++++++|+++++...++ .|.+|+. +++.+..+..+
T Consensus       170 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~  247 (286)
T 1q7f_A          170 VVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK  247 (286)
T ss_dssp             EECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES
T ss_pred             EECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc
Confidence            99999998888888899999997 56677777543  36789999999999888888776 9999995 67777777654


Q ss_pred             CC--cEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          506 ED--KIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       506 ~~--~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      ..  .+.+++++|+|+++++ +.|+.|++|+...
T Consensus       248 ~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          248 VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             CCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            33  4789999999987777 6799999999754

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.73  E-value=4.6e-16  Score=176.18  Aligned_cols=295  Identities=11%  Similarity=0.038  Sum_probs=194.4

Q ss_pred             eecccCCceeEEEEecCCCCEEEEE--eCCCcEEEEECCCceeeeeeeCCccceE---------EEeeeeecCCCE-EEE
Q 004214          234 RLVGYNEEILDLKFLGEEEQYLAVA--TNIEQVQVYDLSSMSCSYVLAGHSEIVL---------CLDTCALSSGKI-LIV  301 (768)
Q Consensus       234 ~~~~~~~~i~~~~~~~~~~~~l~~~--~~~~~i~i~d~~~~~~~~~~~~~~~~v~---------~l~~~~~~~~~~-~l~  301 (768)
                      .+.++...+..+++++ +.-+++..  ..++...||....+.....+..+...+.         ...+..+|+++. +++
T Consensus        18 ~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~   96 (662)
T 3azo_A           18 LVASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF   96 (662)
T ss_dssp             HHHHTCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred             HHhhcCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence            3456777888898884 33344444  3477899998654555556666654444         332111366776 454


Q ss_pred             EEeCCCeEEEEeCC--C-ceEEEeeec-----ccCcEEEEEEecCCCcEEEEEeCC----------CeEEEEeCCCCCCC
Q 004214          302 TGSKDNSVRLWDSE--S-RCCVGVGTG-----HMGAVGAVAFSKKLQNFLVSGSSD----------HTIKVWSFDGLSDD  363 (768)
Q Consensus       302 ~~~~dg~i~iwd~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~  363 (768)
                      +...+..|.+|++.  . +.. ..+..     |...+..++|+|+|+ .|++++.+          ..|.+||+......
T Consensus        97 ~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  174 (662)
T 3azo_A           97 THFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERG-EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA  174 (662)
T ss_dssp             EBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTT-EEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred             EECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCCC-EEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence            44446778888876  3 443 33344     667889999999987 56666665          57999998751000


Q ss_pred             CccccccceeeEee-ccCCCeEEEEEccCCCEEEEEeCC--------CcEEEEeCC-CC---ceEEEEeccCCCeEEEEE
Q 004214          364 AEQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQD--------RTACVWRLP-DL---VSVVTFRGHKRGIWSVEF  430 (768)
Q Consensus       364 ~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~~~~~~~v~~v~~  430 (768)
                      .    .. ....+. .+...+..++|||||+.|+.++.+        ..|++||+. ++   +......+|...+..++|
T Consensus       175 ~----~~-~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~  249 (662)
T 3azo_A          175 D----RS-AVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW  249 (662)
T ss_dssp             C----GG-GSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEE
T ss_pred             c----CC-ceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEE
Confidence            0    00 111222 344567889999999999988755        379999998 56   444444556788999999


Q ss_pred             ccCCCEEEEeeCCC--cEEEEeCCCCceeEEeecCCCc--------EEEEEEEeCCCEEEEEeCCCcEEEE--ECCCCeE
Q 004214          431 SPVDQVVITASGDK--TIKIWSISDGSCLKTFEGHTSS--------VLRASFLTRGAQIVSCGADGLVKLW--TVRTGEC  498 (768)
Q Consensus       431 s~~~~~l~t~~~d~--~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~s~~~~~l~s~~~dg~i~iw--d~~~~~~  498 (768)
                      +|||++++++..++  .|.+||+.+++......++...        +..++|+|+++++++++. +.++||  |+.+++ 
T Consensus       250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-  327 (662)
T 3azo_A          250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-  327 (662)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-
T ss_pred             CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-
Confidence            99999888888888  6777777677655444433322        567899999999999998 999999  555555 


Q ss_pred             EEEeccCCCcEEEE-EEcCCCCEEEEEeCCCcEEE--EEcCCH
Q 004214          499 IATYDKHEDKIWAL-AVGKKTEMFATGGSDALVNL--WHDSTA  538 (768)
Q Consensus       499 ~~~~~~~~~~v~~l-~~s~~~~~l~s~~~dg~v~v--w~~~~~  538 (768)
                      +..+..|...+..+ +++++.-++++++.+....+  |+..++
T Consensus       328 ~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g  370 (662)
T 3azo_A          328 LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG  370 (662)
T ss_dssp             EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred             EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            67777788888877 55444444455565654444  454443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.72  E-value=1.2e-15  Score=172.90  Aligned_cols=311  Identities=11%  Similarity=0.037  Sum_probs=187.6

Q ss_pred             EEEcCCCcEEEEEEeeCCCccEEEEE--eCCCcEEEEECCCCeeEEEecCccceeE---------EEEEc--CCCCE-EE
Q 004214           25 YFKGHKGVVSSILFHPDTDKSLLFSG--SDDATVRVWDLLAKKCVATLDKHFSRVT---------SMAIT--SDGST-LI   90 (768)
Q Consensus        25 ~l~gh~~~V~~l~~spd~~~~~l~sg--~~dg~I~iWd~~~~~~~~~l~~h~~~V~---------~l~fs--~d~~~-L~   90 (768)
                      .+.+|...|..++|+++  ..++++.  +.++...||....+.....+..|...+.         ...|+  |||++ |+
T Consensus        18 ~~~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           18 LVASRSGRPACVGAVGD--EVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHHHTCSCCEEEEEETT--EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             HHhhcCCccceeEEcCC--eEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            45679999999999975  4446776  5688999999755666677877776666         66666  99998 77


Q ss_pred             EEeC-CCeEEEEECC--C-CeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEE
Q 004214           91 SAGR-DKVVNLWDLR--D-YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN  166 (768)
Q Consensus        91 s~~~-dg~i~vWd~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd  166 (768)
                      .++. +..|.+|++.  . +... .+....         .                                        
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~---------~----------------------------------------  125 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAVPR-PLTPVS---------A----------------------------------------  125 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCCCE-ECSCCC---------C----------------------------------------
T ss_pred             EEECCCCeEEEEcCCCCCCCCCE-eccCCc---------c----------------------------------------
Confidence            6554 4566666654  2 3211 111000         0                                        


Q ss_pred             cCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEE
Q 004214          167 ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLK  246 (768)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  246 (768)
                                          ..+........++|++..++.++.+..-       .                        
T Consensus       126 --------------------~~~~~~~~~~~~spDg~~l~~~~~~~~~-------~------------------------  154 (662)
T 3azo_A          126 --------------------VGGGLRWADPVLLPERGEVWCMAEEFTG-------E------------------------  154 (662)
T ss_dssp             --------------------STTCEEEEEEEEETTTTEEEEEEEEECS-------S------------------------
T ss_pred             --------------------CCCCccccCcEECCCCCEEEEEEecccC-------C------------------------
Confidence                                0000112233344444433333322000       0                        


Q ss_pred             EecCCCCEEEEEeCCCcEEEEECCC------ceeeeeee-CCccceEEEeeeeecCCCEEEEEEeCC--------CeEEE
Q 004214          247 FLGEEEQYLAVATNIEQVQVYDLSS------MSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKD--------NSVRL  311 (768)
Q Consensus       247 ~~~~~~~~l~~~~~~~~i~i~d~~~------~~~~~~~~-~~~~~v~~l~~~~~~~~~~~l~~~~~d--------g~i~i  311 (768)
                        .+       ......|++||+.+      +... .+. .+...+..+.  ++++++. |+.++.+        ..|++
T Consensus       155 --~~-------~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~--~SpDG~~-la~~~~~~~~~~~~~~~i~~  221 (662)
T 3azo_A          155 --GP-------SDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPR--LSPDGRQ-AVWLAWDHPRMPWEGTELKT  221 (662)
T ss_dssp             --ST-------TCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCE--ECTTSSE-EEEEEECTTCCTTTCEEEEE
T ss_pred             --CC-------CCceeEEEEEECCCCccccCCcee-EEEecCCCcccCce--ECCCCCE-EEEEECCCCCCCCCCcEEEE
Confidence              00       00014688888877      5443 444 4455565665  7788887 5555533        47999


Q ss_pred             EeCC-Cc---eEEEeeecccCcEEEEEEecCCCcEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCC----
Q 004214          312 WDSE-SR---CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK----  381 (768)
Q Consensus       312 wd~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----  381 (768)
                      ||+. ++   .......+|...+..++|+|+|+ +++++..++  .|..||+..+.          .......+..    
T Consensus       222 ~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~----------~~~l~~~~~~~~~p  290 (662)
T 3azo_A          222 ARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGA----------ATQLCRREEEFAGP  290 (662)
T ss_dssp             EEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCC----------EEESSCCSSBSSCC
T ss_pred             EEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCc----------eeecccccccccCc
Confidence            9998 56   55555556678899999999988 888888888  45555543321          1111111111    


Q ss_pred             ----CeEEEEEccCCCEEEEEeCCCcEEEE--eCCCCceEEEEeccCCCeEEE-EEccCCCEEEEeeCCC--cEEEEeCC
Q 004214          382 ----DINSLAVAPNDSLVCTGSQDRTACVW--RLPDLVSVVTFRGHKRGIWSV-EFSPVDQVVITASGDK--TIKIWSIS  452 (768)
Q Consensus       382 ----~i~~~~~s~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~t~~~d~--~i~iwd~~  452 (768)
                          .+.+++|+|+++++++++. +.+++|  |+.+++ +..+..|...+..+ +++++.-++++++.+.  .|.+||+.
T Consensus       291 ~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~  368 (662)
T 3azo_A          291 LWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTV  368 (662)
T ss_dssp             CCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETT
T ss_pred             cccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECC
Confidence                1567899999999999998 999999  555554 66777777777777 5544333444455554  46666777


Q ss_pred             CCceeEEeecCC
Q 004214          453 DGSCLKTFEGHT  464 (768)
Q Consensus       453 ~~~~~~~~~~~~  464 (768)
                      +++.......+.
T Consensus       369 ~g~~~~l~~~~~  380 (662)
T 3azo_A          369 TGRARTIGARHT  380 (662)
T ss_dssp             TCCEEEEESCCC
T ss_pred             CCceEEeecCCc
Confidence            777554444443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.69  E-value=4.3e-14  Score=141.52  Aligned_cols=239  Identities=11%  Similarity=0.158  Sum_probs=174.5

Q ss_pred             cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee------CCccceEEEeeeeecCCCEEEEEEeC-CCeEE
Q 004214          238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA------GHSEIVLCLDTCALSSGKILIVTGSK-DNSVR  310 (768)
Q Consensus       238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~------~~~~~v~~l~~~~~~~~~~~l~~~~~-dg~i~  310 (768)
                      +-..+.++++.+ ++.++++...++.|.+||.. +.....+.      ++...+.+++  +.+.++.++++... ++.|.
T Consensus        28 ~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~--~~~~~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           28 QFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVA--VVRNSGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             CBSCEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEE--EETTTTEEEEEECGGGCEEE
T ss_pred             ccCCCceEEECC-CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEE--EEcCCCeEEEEcCCCCCEEE
Confidence            344677888875 56677777888999999987 55554443      2335567775  54455564555533 89999


Q ss_pred             EEeCCCceEEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee--ccCCCeEEEE
Q 004214          311 LWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA--AHGKDINSLA  387 (768)
Q Consensus       311 iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~  387 (768)
                      +|| .+++.+..+. .+...+..++++|++. ++++...++.|.+|+....           ......  .+...+.+++
T Consensus       104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~-----------~~~~~~~~~~~~~p~~i~  170 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGN-----------VLHKFGCSKHLEFPNGVV  170 (286)
T ss_dssp             EEC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSC-----------EEEEEECTTTCSSEEEEE
T ss_pred             EEC-CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCC-----------EEEEeCCCCccCCcEEEE
Confidence            999 5566665553 3446789999999975 7777778899999986421           111111  3445689999


Q ss_pred             EccCCCEEEEEeCCCcEEEEeCCCCceEEEEecc--CCCeEEEEEccCCCEEEEeeCCC-cEEEEeCCCCceeEEeecCC
Q 004214          388 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH--KRGIWSVEFSPVDQVVITASGDK-TIKIWSISDGSCLKTFEGHT  464 (768)
Q Consensus       388 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~t~~~d~-~i~iwd~~~~~~~~~~~~~~  464 (768)
                      ++|+|+++++...++.|++||. +++.+..+..+  ...+..++++|+|+++++...++ .|.+||. +++.+..+..+.
T Consensus       171 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~  248 (286)
T 1q7f_A          171 VNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV  248 (286)
T ss_dssp             ECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS
T ss_pred             ECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC
Confidence            9999998888788899999997 45566666543  35789999999999998888876 9999995 677777776554


Q ss_pred             C--cEEEEEEEeCCCEEEEEeCCCcEEEEECCCC
Q 004214          465 S--SVLRASFLTRGAQIVSCGADGLVKLWTVRTG  496 (768)
Q Consensus       465 ~--~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  496 (768)
                      .  .+..++++|+|+++++ +.|+.|++|++...
T Consensus       249 ~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          249 KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            3  4789999999986666 67899999998654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.68  E-value=3.6e-14  Score=146.57  Aligned_cols=241  Identities=10%  Similarity=0.091  Sum_probs=165.7

Q ss_pred             CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC---C--eEEEEeCCCceEEEeeecccCcEEEEEE
Q 004214          261 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD---N--SVRLWDSESRCCVGVGTGHMGAVGAVAF  335 (768)
Q Consensus       261 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d---g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~  335 (768)
                      ++.|.+||+.+++... +    ..+..+.  ++|+++. |+.++.+   +  .|.+|++.+++.......+.  +..++|
T Consensus        42 ~~~l~~~d~~~~~~~~-l----~~~~~~~--~SpDg~~-la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~w  111 (347)
T 2gop_A           42 ENTIVIENLKNNARRF-I----ENATMPR--ISPDGKK-IAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEW  111 (347)
T ss_dssp             EEEEEEEETTTCCEEE-E----ESCEEEE--ECTTSSE-EEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEE
T ss_pred             cceEEEEeCCCCceEE-c----ccCCCeE--ECCCCCE-EEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeE
Confidence            4679999998876543 3    4455665  7788887 5444432   3  48888998887766555443  999999


Q ss_pred             ecCCCcEEEEEeC--------------------------CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214          336 SKKLQNFLVSGSS--------------------------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA  389 (768)
Q Consensus       336 ~~~~~~~l~s~~~--------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  389 (768)
                      +|+++.+++++..                          ...|.+||+..+.          ....+.. . .+..++|+
T Consensus       112 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~----------~~~~l~~-~-~~~~~~~s  179 (347)
T 2gop_A          112 NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE----------VIEEFEK-P-RFSSGIWH  179 (347)
T ss_dssp             CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE----------EEEEEEE-E-TTCEEEEE
T ss_pred             CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe----------EEeeecC-C-CcccccCC
Confidence            9998754444322                          2568888886431          1011222 2 78899999


Q ss_pred             cCCCEEEEEeCCC-------cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCC--------CcEEEEeCCCC
Q 004214          390 PNDSLVCTGSQDR-------TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD--------KTIKIWSISDG  454 (768)
Q Consensus       390 ~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d--------~~i~iwd~~~~  454 (768)
                      |+| +++++..++       ...+|.+.+++. ..+..+ ..+..+  +|+|+.|+.++.+        ..|.+||  ++
T Consensus       180 pdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~  252 (347)
T 2gop_A          180 RDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK  252 (347)
T ss_dssp             TTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS
T ss_pred             CCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC
Confidence            999 777776542       344544444443 344444 555554  9999988877654        3688888  66


Q ss_pred             ceeEEeecCCCcEEE-EEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcE-EE
Q 004214          455 SCLKTFEGHTSSVLR-ASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALV-NL  532 (768)
Q Consensus       455 ~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v-~v  532 (768)
                      +......+|...+.. +.|+ ++ ++++++.++.+++| +.+++..... .+...|.+++|+|  ..+++++.++.. .+
T Consensus       253 ~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l  326 (347)
T 2gop_A          253 EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE--IVVYLKETATRLREL  326 (347)
T ss_dssp             CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEEEEESS--SEEEEEECSSSCCEE
T ss_pred             ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEeeeeeC--cEEEEEcCCCChHHh
Confidence            655555566778886 8999 88 88999999999999 8877665444 4578899999999  677788777765 78


Q ss_pred             EEcC
Q 004214          533 WHDS  536 (768)
Q Consensus       533 w~~~  536 (768)
                      |...
T Consensus       327 ~~~~  330 (347)
T 2gop_A          327 FTWD  330 (347)
T ss_dssp             EEES
T ss_pred             eEeC
Confidence            8764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.68  E-value=1.9e-14  Score=144.96  Aligned_cols=243  Identities=12%  Similarity=0.075  Sum_probs=173.9

Q ss_pred             eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEe
Q 004214          277 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS  356 (768)
Q Consensus       277 ~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  356 (768)
                      .+..+.....++.  +.++++.+++++..++.|..|+..++  ...+..+...+.+++++|++. ++++...++.|.+||
T Consensus        22 ~l~~~~~~~eg~~--~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           22 RLADGFTWTEGPV--YVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLERQR   96 (296)
T ss_dssp             EEECCCSSEEEEE--EEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEEEEC
T ss_pred             EEecCCccccCCe--EeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc-EEEEecCCCeEEEEc
Confidence            3444445556665  77888766889999999999999987  556666778899999999976 666666678999999


Q ss_pred             CCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE----e-------------CCCcEEEEeCCCCceEEEEe
Q 004214          357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG----S-------------QDRTACVWRLPDLVSVVTFR  419 (768)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~----~-------------~dg~i~i~d~~~~~~~~~~~  419 (768)
                      ...+....      ............+..++++|+|+++++.    +             ..+.|..++.. ++ ...+.
T Consensus        97 ~~~g~~~~------~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~  168 (296)
T 3e5z_A           97 EPGGEWES------IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPI  168 (296)
T ss_dssp             STTCCEEE------EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEE
T ss_pred             CCCCcEEE------EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEee
Confidence            85432100      0000001112356789999999988873    2             13456666654 43 34455


Q ss_pred             ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC-CCce---eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214          420 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS-DGSC---LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       420 ~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~-~~~~---~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  495 (768)
                      .+......++|+|+++.+++.+.++.|.+|++. ++..   ...+..+...+..+++.++|+++++.  ++.|.+|+.. 
T Consensus       169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-  245 (296)
T 3e5z_A          169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-  245 (296)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-
T ss_pred             cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-
Confidence            566778999999999988777788999999987 5554   33443355567789999999876666  7889999986 


Q ss_pred             CeEEEEeccCCCcEEEEEE-cCCCCEEEEEeCCCcEEEEEcCC
Q 004214          496 GECIATYDKHEDKIWALAV-GKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       496 ~~~~~~~~~~~~~v~~l~~-s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      ++.+..+..+.. +++++| +|+++.|++++.++. .-++..+
T Consensus       246 g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l-~~~~~~~  286 (296)
T 3e5z_A          246 GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEF-WSIETNV  286 (296)
T ss_dssp             SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEE-EEEECSC
T ss_pred             CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeE-EEEEccc
Confidence            888888887777 899999 689999998887753 3334433

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=3.9e-14  Score=144.74  Aligned_cols=241  Identities=14%  Similarity=0.111  Sum_probs=178.0

Q ss_pred             CCceeEEEEecCCCCEEEEEeCC------------------------CcEEEEECCCceeeeeee-CCccceEEEeeeee
Q 004214          239 NEEILDLKFLGEEEQYLAVATNI------------------------EQVQVYDLSSMSCSYVLA-GHSEIVLCLDTCAL  293 (768)
Q Consensus       239 ~~~i~~~~~~~~~~~~l~~~~~~------------------------~~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~  293 (768)
                      -+.+..+++.+ +++++++...+                        +.|.+||..+++....+. ++......++  +.
T Consensus        23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia--~d   99 (329)
T 3fvz_A           23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLS--ID   99 (329)
T ss_dssp             CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEE--EC
T ss_pred             cCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEE--EC
Confidence            35677888775 45666666665                        479999999888776554 3445677776  66


Q ss_pred             cCCCEEEEEEeCCCeEEEEeCCCce-EEEee---------ecccCcEEEEEEecCCCcEEEEEe-CCCeEEEEeCCCCCC
Q 004214          294 SSGKILIVTGSKDNSVRLWDSESRC-CVGVG---------TGHMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWSFDGLSD  362 (768)
Q Consensus       294 ~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~---------~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~  362 (768)
                      +++. ++++...++.|++||..... .+..+         ..+......++++|++..++++.+ .++.|++|+....  
T Consensus       100 ~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~--  176 (329)
T 3fvz_A          100 TDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK--  176 (329)
T ss_dssp             TTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC--
T ss_pred             CCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC--
Confidence            6666 58888889999999986552 33333         234557899999994355777776 6999999995421  


Q ss_pred             CCccccccceeeEee----------ccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceEEEEe--ccCCCeEEEE
Q 004214          363 DAEQPMNLKAKAVVA----------AHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVE  429 (768)
Q Consensus       363 ~~~~~~~~~~~~~~~----------~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~v~  429 (768)
                               ......          .+-..+..++++|+ +.++++...++.|++|+..+++.+..+.  .+...+.+++
T Consensus       177 ---------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~  247 (329)
T 3fvz_A          177 ---------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS  247 (329)
T ss_dssp             ---------EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred             ---------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence                     111111          12234789999998 7777887888999999999888888874  3566789999


Q ss_pred             EccCCCEEEE-------eeCCCcEEEEeCCCCceeEEee---cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214          430 FSPVDQVVIT-------ASGDKTIKIWSISDGSCLKTFE---GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       430 ~s~~~~~l~t-------~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  495 (768)
                      |+| +..+++       ...+..|++||+.+++.+..+.   ++...+..++++|+|..+++...++.|++|++..
T Consensus       248 ~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          248 YIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             ecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            999 433333       3345689999999999999884   6777899999999998788888899999999753

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.66  E-value=6e-14  Score=143.97  Aligned_cols=267  Identities=12%  Similarity=0.037  Sum_probs=183.1

Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE
Q 004214          242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG  321 (768)
Q Consensus       242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  321 (768)
                      +.++.|.+. ...++....++.++.|   .+.....+..+...+.++.  +.+++. +++++..++.|.+||..+++...
T Consensus         8 ~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~   80 (333)
T 2dg1_A            8 LPTLFYSGK-SNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLN--FDRQGQ-LFLLDVFEGNIFKINPETKEIKR   80 (333)
T ss_dssp             CCBCCSCGG-GGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEE--ECTTSC-EEEEETTTCEEEEECTTTCCEEE
T ss_pred             cceeeecCC-ccceeEEeecccCccc---ccceeEEEeccCccccCcE--ECCCCC-EEEEECCCCEEEEEeCCCCcEEE
Confidence            455555543 3334444566788888   3445556666666777776  556555 57788889999999999887766


Q ss_pred             eeecccCcEEEEEEecCCCcEEEEEeCC----CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEE
Q 004214          322 VGTGHMGAVGAVAFSKKLQNFLVSGSSD----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT  397 (768)
Q Consensus       322 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  397 (768)
                      ....+...+.+++++|++. ++++...+    +.|.+||.......        .......+...+.+++++|+|+++++
T Consensus        81 ~~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~--------~~~~~~~~~~~~~~i~~d~~g~l~v~  151 (333)
T 2dg1_A           81 PFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQ--------DIIEDLSTAYCIDDMVFDSKGGFYFT  151 (333)
T ss_dssp             EEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCE--------EEECSSSSCCCEEEEEECTTSCEEEE
T ss_pred             EeeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEE--------EEEccCccCCcccceEECCCCCEEEE
Confidence            5545677899999999976 66666655    68999998754211        00000123457899999999988777


Q ss_pred             EeC------CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEE-EeeCCCcEEEEeCCC-CceeEE--------ee
Q 004214          398 GSQ------DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI-TASGDKTIKIWSISD-GSCLKT--------FE  461 (768)
Q Consensus       398 ~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-t~~~d~~i~iwd~~~-~~~~~~--------~~  461 (768)
                      ...      .+.|..++..+++... +..+...+..++|+|+++.|+ +.+.++.|.+||+.+ +..+..        +.
T Consensus       152 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~  230 (333)
T 2dg1_A          152 DFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT  230 (333)
T ss_dssp             ECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC
T ss_pred             eccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC
Confidence            654      3556667765544433 333345678999999998554 445678999999864 443322        12


Q ss_pred             cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC------cEEEEEEcCCCCEEEEEeCC
Q 004214          462 GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED------KIWALAVGKKTEMFATGGSD  527 (768)
Q Consensus       462 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~l~~s~~~~~l~s~~~d  527 (768)
                      ++ ..+..++++++|+++++...++.|.+||. +++.+..+..+..      .+.+++|+|++..|+.++.+
T Consensus       231 ~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          231 GH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             SS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            22 46788999999998888878899999998 5777777754433      68899999998777665555

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.66  E-value=1.1e-13  Score=143.02  Aligned_cols=174  Identities=9%  Similarity=0.090  Sum_probs=118.5

Q ss_pred             CCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCC-------eEEEEeCCCCCCCCccccccceeeEeec
Q 004214          306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-------TIKVWSFDGLSDDAEQPMNLKAKAVVAA  378 (768)
Q Consensus       306 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~  378 (768)
                      ...|.+||+.+++.+..+.. . .+..++|+|++  +++++..++       ...+|.++.+        .   ...+..
T Consensus       151 ~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~--------~---~~~l~~  215 (347)
T 2gop_A          151 KTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDG--------K---EEKMFE  215 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETT--------E---EEEEEE
T ss_pred             cceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCC--------c---eEEecc
Confidence            45799999998887444444 3 78899999997  677766542       4455554411        1   111122


Q ss_pred             cCCCeEEEEEccCCCEEEEEeCC--------CcEEEEeCCCCceEEEEeccCCCeEE-EEEccCCCEEEEeeCCCcEEEE
Q 004214          379 HGKDINSLAVAPNDSLVCTGSQD--------RTACVWRLPDLVSVVTFRGHKRGIWS-VEFSPVDQVVITASGDKTIKIW  449 (768)
Q Consensus       379 ~~~~i~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~-v~~s~~~~~l~t~~~d~~i~iw  449 (768)
                      + ..+..+  +|+|+.|+.++.+        ..|.+||  +++......++...+.. +.|+ ++ ++++++.++.++||
T Consensus       216 ~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~  288 (347)
T 2gop_A          216 K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY  288 (347)
T ss_dssp             E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE
T ss_pred             C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE
Confidence            2 344444  9999999887754        3688888  55554444556677886 9999 88 99999999999999


Q ss_pred             eCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcE-EEEECCCCeEEEEeccCCC
Q 004214          450 SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV-KLWTVRTGECIATYDKHED  507 (768)
Q Consensus       450 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i-~iwd~~~~~~~~~~~~~~~  507 (768)
                       +.+++.. .+..+...|.++.|+|  ..+++++.++.. .+|.+. ++ ...+..|+.
T Consensus       289 -~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~  341 (347)
T 2gop_A          289 -IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYND  341 (347)
T ss_dssp             -EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred             -EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence             8866654 4444678899999999  677777777754 777766 55 344554544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.65  E-value=1.5e-13  Score=140.21  Aligned_cols=257  Identities=9%  Similarity=-0.001  Sum_probs=185.5

Q ss_pred             CCCcEEEEECCCceeeeeee------CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEE
Q 004214          260 NIEQVQVYDLSSMSCSYVLA------GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV  333 (768)
Q Consensus       260 ~~~~i~i~d~~~~~~~~~~~------~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  333 (768)
                      .++.|.+||..+++....+.      ........+.  +  .++.++++...++.|.+||..+++.+..+. .......+
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~--~--~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i   89 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMV--I--RDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYI   89 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEE--E--ETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEE--E--ECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEE
Confidence            37899999999988765441      1122345553  3  345557777778999999999999988775 34668899


Q ss_pred             EEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccC-----CCeEEEEEccCCCEEEEEe-CCCcEEEE
Q 004214          334 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG-----KDINSLAVAPNDSLVCTGS-QDRTACVW  407 (768)
Q Consensus       334 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~-~dg~i~i~  407 (768)
                      ++++++ .++++...++.|.+||.....          .........     .....+++ .+++++++.. .++.|.+|
T Consensus        90 ~~~~~g-~lyv~~~~~~~v~~iD~~t~~----------~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~vi  157 (328)
T 3dsm_A           90 HFLSDE-KAYVTQIWDYRIFIINPKTYE----------ITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKI  157 (328)
T ss_dssp             EEEETT-EEEEEEBSCSEEEEEETTTTE----------EEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEE
T ss_pred             EEeCCC-eEEEEECCCCeEEEEECCCCe----------EEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEE
Confidence            998886 455555589999999987432          111111111     14556777 4444444443 48899999


Q ss_pred             eCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCC----------CcEEEEeCCCCceeEEeecC-CCcEEEEEEEeCC
Q 004214          408 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD----------KTIKIWSISDGSCLKTFEGH-TSSVLRASFLTRG  476 (768)
Q Consensus       408 d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d----------~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~  476 (768)
                      |+.+++....+.. ......++++|+|++++++..+          +.|.+||..+++....+... ......++|+|++
T Consensus       158 D~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~  236 (328)
T 3dsm_A          158 DTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTR  236 (328)
T ss_dssp             ETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTS
T ss_pred             ECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCC
Confidence            9999988887764 3345789999999988887665          78999999999888777633 2468899999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEE--eccCCCcEEEEEEcC-CCCEEEEE----eCCCcEEEEEcC
Q 004214          477 AQIVSCGADGLVKLWTVRTGECIAT--YDKHEDKIWALAVGK-KTEMFATG----GSDALVNLWHDS  536 (768)
Q Consensus       477 ~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~s~-~~~~l~s~----~~dg~v~vw~~~  536 (768)
                      ++|+++..  .|.+||..+++....  +.........++++| ++..+++.    ..++.|.+|+..
T Consensus       237 ~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          237 DTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             CEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             CEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            99988765  899999998876421  121245688999999 56666666    678899999876

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.64  E-value=1.2e-13  Score=136.25  Aligned_cols=211  Identities=13%  Similarity=0.107  Sum_probs=168.1

Q ss_pred             EEEEEEeCCCeEEEEeCCCceEEEeeeccc-CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe
Q 004214          298 ILIVTGSKDNSVRLWDSESRCCVGVGTGHM-GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV  376 (768)
Q Consensus       298 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  376 (768)
                      .+|++++.++.|.+||..+++.+..+..+. ..+.++.++|+|+ +++  +.++.|..||.. +.          ....+
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~~-G~----------~~W~~   71 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITRD-GR----------ELWNI   71 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECTT-SC----------EEEEE
T ss_pred             cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECCC-CC----------EEEEE
Confidence            359999999999999999999999988776 4788999999976 566  457889999873 31          22222


Q ss_pred             ecc-CCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceEEEEec------cCCCeEEEEEccCCCEEEEeeCCCcEEE
Q 004214          377 AAH-GKDINSLAVAPNDSLVCTGSQ-DRTACVWRLPDLVSVVTFRG------HKRGIWSVEFSPVDQVVITASGDKTIKI  448 (768)
Q Consensus       377 ~~~-~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~v~~v~~s~~~~~l~t~~~d~~i~i  448 (768)
                      ..+ ...+.++.+.|+|+++++.+. ++.+..+|. +++.+..+..      +......+++.++|+++++...++.|..
T Consensus        72 ~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~  150 (276)
T 3no2_A           72 AAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVRE  150 (276)
T ss_dssp             ECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEE
T ss_pred             cCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEE
Confidence            322 346788999999999999887 778888885 7777766652      2234556788999999999999999999


Q ss_pred             EeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCC------CcEEEEEEcCCCCEEE
Q 004214          449 WSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE------DKIWALAVGKKTEMFA  522 (768)
Q Consensus       449 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~l~~s~~~~~l~  522 (768)
                      ||.. |+.+.++..+ ..+..+.+.++|+.+++++.++.|..+|..+|+.+.++..+.      ..+.+++..++|..++
T Consensus       151 ~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v  228 (276)
T 3no2_A          151 IAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYI  228 (276)
T ss_dssp             ECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEE
T ss_pred             ECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEE
Confidence            9997 9999999865 345567888999999999988899999999999999986432      2378889999999988


Q ss_pred             EEe
Q 004214          523 TGG  525 (768)
Q Consensus       523 s~~  525 (768)
                      +..
T Consensus       229 ~~~  231 (276)
T 3no2_A          229 CNW  231 (276)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            873

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.63  E-value=5.4e-12  Score=127.02  Aligned_cols=279  Identities=8%  Similarity=-0.043  Sum_probs=190.2

Q ss_pred             CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeee-eeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc
Q 004214          239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV-LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR  317 (768)
Q Consensus       239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  317 (768)
                      ...+.++++.+ ++.++++...++.|..||.. +..... ...+...+.++.  ..+++. +.++...++.|..||....
T Consensus        14 ~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~--~~~~g~-l~v~~~~~~~i~~~~~~g~   88 (299)
T 2z2n_A           14 DTGPYGITVSD-KGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLT--ISSDGE-VWFTENAANKIGRITKKGI   88 (299)
T ss_dssp             SCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEE--ECTTSC-EEEEETTTTEEEEECTTSC
T ss_pred             CCCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEE--ECCCCC-EEEeCCCCCeEEEECCCCc
Confidence            45677888764 55555555557899999988 544322 233455677775  555554 3666566889999998733


Q ss_pred             eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEE
Q 004214          318 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT  397 (768)
Q Consensus       318 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  397 (768)
                      ............+..+++.+++. ++++...++.|..||.. +.        . ...........+.+++++++|+++++
T Consensus        89 ~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~-g~--------~-~~~~~~~~~~~~~~i~~~~~g~l~v~  157 (299)
T 2z2n_A           89 IKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITDD-GK--------I-REYELPNKGSYPSFITLGSDNALWFT  157 (299)
T ss_dssp             EEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CC--------E-EEEECSSTTCCEEEEEECTTSCEEEE
T ss_pred             EEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECCC-CC--------E-EEecCCCCCCCCceEEEcCCCCEEEE
Confidence            21222223456789999999865 66666678899999873 21        0 11111223456899999999988887


Q ss_pred             EeCCCcEEEEeCCCCceEEE-EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEE-eecCCCcEEEEEEEeC
Q 004214          398 GSQDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-FEGHTSSVLRASFLTR  475 (768)
Q Consensus       398 ~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~  475 (768)
                      ...++.|..||. +++.... +......+.+++++++|+++++...++.|.+||. +++.... ...+...+..+++.++
T Consensus       158 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~  235 (299)
T 2z2n_A          158 ENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAG  235 (299)
T ss_dssp             ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECST
T ss_pred             eCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCC
Confidence            777789999998 6655432 2334556889999999998887777889999999 6664332 2335567899999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEE-eccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          476 GAQIVSCGADGLVKLWTVRTGECIAT-YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       476 ~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      |+.+++...++.|..||. +++.... +..+...+.++++ +++..+++.. .+.+..++..+.
T Consensus       236 g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          236 IDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             TCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred             CCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence            987776667789999998 5553322 2344567899999 9998877766 456677776654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.63  E-value=1.9e-13  Score=155.57  Aligned_cols=246  Identities=7%  Similarity=0.003  Sum_probs=174.7

Q ss_pred             CccceEEEeeeeecCCCEEEEEEeCCC----eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCe-----
Q 004214          281 HSEIVLCLDTCALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT-----  351 (768)
Q Consensus       281 ~~~~v~~l~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~-----  351 (768)
                      |...+..+.  ++|+++.++++.+.+|    .|++||+.+++.......+ ..+..++|+|+|+ .|+.++.++.     
T Consensus       123 ~~~~~~~~~--~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~-~l~~~~~~~~~~~~~  198 (710)
T 2xdw_A          123 GTVALRGYA--FSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGK-GMFYNAYPQQDGKSD  198 (710)
T ss_dssp             SCEEEEEEE--ECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSS-EEEEEECCCCSSCCS
T ss_pred             CCEEEEEEE--ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCC-EEEEEEECCcccccc
Confidence            334566666  7788887444444444    8999999999877643322 2366799999987 4666666554     


Q ss_pred             -----------EEEEeCCCCCCCCccccccceeeEe--eccCCCeEEEEEccCCCEEEEEeC-----CCcEEEEeCCC--
Q 004214          352 -----------IKVWSFDGLSDDAEQPMNLKAKAVV--AAHGKDINSLAVAPNDSLVCTGSQ-----DRTACVWRLPD--  411 (768)
Q Consensus       352 -----------i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~--  411 (768)
                                 |++|++.....        ......  ..+...+..+.|+|||++|+.++.     +..|++||+.+  
T Consensus       199 ~~~~~~~~~~~v~~~~l~t~~~--------~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~  270 (710)
T 2xdw_A          199 GTETSTNLHQKLYYHVLGTDQS--------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQES  270 (710)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGG--------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred             ccccccCCCCEEEEEECCCCcc--------cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccc
Confidence                       99999875321        111111  224455789999999999988765     56899999976  


Q ss_pred             ----Cc-eEEEEeccCCCeEEEEEccCCCEEEEeeCC----CcEEEEeCCCCc--eeEEeecCCC--cEEEEEEEeCCCE
Q 004214          412 ----LV-SVVTFRGHKRGIWSVEFSPVDQVVITASGD----KTIKIWSISDGS--CLKTFEGHTS--SVLRASFLTRGAQ  478 (768)
Q Consensus       412 ----~~-~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d----~~i~iwd~~~~~--~~~~~~~~~~--~v~~~~~s~~~~~  478 (768)
                          +. ....+..+...+.. .|+|+|+.|+..+..    +.|.+||+.++.  ....+..|..  .+..+.|++++.+
T Consensus       271 ~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l  349 (710)
T 2xdw_A          271 NGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFL  349 (710)
T ss_dssp             SSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEE
T ss_pred             cccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEE
Confidence                43 45666667666655 488999877766553    369999998775  2455555544  6788999877778


Q ss_pred             EEEEeCCCc--EEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE-e---CCCcEEEEEcCCHH
Q 004214          479 IVSCGADGL--VKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG-G---SDALVNLWHDSTAA  539 (768)
Q Consensus       479 l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~-~---~dg~v~vw~~~~~~  539 (768)
                      +++...|+.  |.+|++.+|+.+..+..+.+.+..++++|++..++.. +   ..+.|.+|++.+++
T Consensus       350 v~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          350 VLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            888888884  6667877888888888788889999999998766633 2   35789999987764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.61  E-value=1.3e-13  Score=136.77  Aligned_cols=241  Identities=9%  Similarity=-0.041  Sum_probs=169.6

Q ss_pred             ceEEEeeeeecCCCEEEE-EEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004214          284 IVLCLDTCALSSGKILIV-TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD  362 (768)
Q Consensus       284 ~v~~l~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  362 (768)
                      ...++.  +.+++. +++ +.+.++.|.+|+..+.........+...+.++++++++. ++++.. ++.|..||......
T Consensus        25 ~p~~i~--~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVA--VDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEE--ECTTCC-EEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCC
T ss_pred             CccceE--ECCCCC-EEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceE
Confidence            444554  556665 455 446789999999876554333233445678899999876 555555 88999999764321


Q ss_pred             CCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC
Q 004214          363 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG  442 (768)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~  442 (768)
                                ..........+.+++++|+|+++++...++.|.+|+..+.............+.+++++|+|+++++...
T Consensus       100 ----------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  169 (270)
T 1rwi_B          100 ----------TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD  169 (270)
T ss_dssp             ----------EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG
T ss_pred             ----------eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC
Confidence                      1111122356889999999998887777889999987655443322233346789999999998888777


Q ss_pred             CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEE
Q 004214          443 DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFA  522 (768)
Q Consensus       443 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~  522 (768)
                      ++.|.+||...+........+...+..+++.++|..+++...++.|.+|+............+...+.+++++++|+.++
T Consensus       170 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v  249 (270)
T 1rwi_B          170 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYV  249 (270)
T ss_dssp             GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEE
T ss_pred             CCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEE
Confidence            88999999877665443334446788999999997777777788999999876554433323346789999999999999


Q ss_pred             EEeCCCcEEEEEcCCHH
Q 004214          523 TGGSDALVNLWHDSTAA  539 (768)
Q Consensus       523 s~~~dg~v~vw~~~~~~  539 (768)
                      +...++.|.+++...++
T Consensus       250 ~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          250 ADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EEGGGTEEEEECCCGGG
T ss_pred             EECCCCEEEEEcCCCcc
Confidence            99999999999987653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.61  E-value=4e-12  Score=131.22  Aligned_cols=295  Identities=11%  Similarity=0.007  Sum_probs=186.0

Q ss_pred             EEeeCCCccEEEEE-eCCC--cEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEe----------CCCeEEEEEC
Q 004214           37 LFHPDTDKSLLFSG-SDDA--TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAG----------RDKVVNLWDL  103 (768)
Q Consensus        37 ~~spd~~~~~l~sg-~~dg--~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~----------~dg~i~vWd~  103 (768)
                      ...|++++.+++.+ +.+.  +|.+||..+++.+.++.....+  .++|+|||++|+.+.          .++.|.+||.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            44577766333332 2222  8999999999999888765544  999999999999885          3678999999


Q ss_pred             CCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeec
Q 004214          104 RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS  183 (768)
Q Consensus       104 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~  183 (768)
                      .+++.+.+++.......                                                               
T Consensus       105 ~t~~~~~~i~~~~~~~~---------------------------------------------------------------  121 (373)
T 2mad_H          105 VTFLPIADIELPDAPRF---------------------------------------------------------------  121 (373)
T ss_pred             CCCcEEEEEECCCcccc---------------------------------------------------------------
Confidence            88776666543200000                                                               


Q ss_pred             ccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC--C
Q 004214          184 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN--I  261 (768)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--~  261 (768)
                                                                         ..+  .....+.++ +++++|+++..  +
T Consensus       122 ---------------------------------------------------~~g--~~p~~~~~s-pDG~~l~v~n~~~~  147 (373)
T 2mad_H          122 ---------------------------------------------------DVG--PYSWMNANT-PNNADLLFFQFAAG  147 (373)
T ss_pred             ---------------------------------------------------ccC--CCccceEEC-CCCCEEEEEecCCC
Confidence                                                               000  001223333 35555555542  4


Q ss_pred             CcEEEEECCCceeeee-eeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee-----cccCc-EEEEE
Q 004214          262 EQVQVYDLSSMSCSYV-LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-----GHMGA-VGAVA  334 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~-v~~~~  334 (768)
                      +.|.++| .+++.+.. +....    |+.  ..+.+...+++.+.||.+.++|. +++......     ....+ .....
T Consensus       148 ~~v~viD-~t~~~~~~~i~~~~----~~~--~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~  219 (373)
T 2mad_H          148 PAVGLVV-QGGSSDDQLLSSPT----CYH--IHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPA  219 (373)
T ss_pred             CeEEEEE-CCCCEEeEEcCCCc----eEE--EEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecce
Confidence            6788888 88777666 44322    122  34555555777888999999999 776663321     11122 12345


Q ss_pred             EecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccccee--eEeeccCCCeEEEEEccCCCEEEEEeC----------CC
Q 004214          335 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK--AVVAAHGKDINSLAVAPNDSLVCTGSQ----------DR  402 (768)
Q Consensus       335 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~----------dg  402 (768)
                      +.+++..++++. ..+.+.+.|+................  ............++++|+++.+.++..          ++
T Consensus       220 ~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~  298 (373)
T 2mad_H          220 QANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK  298 (373)
T ss_pred             eEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence            666655444444 67889999986432110000000000  000001233445789999988887654          35


Q ss_pred             cEEEEeCCCCceEEEEeccCCCeEEEEEccCCC-EEEEee-CCCcEEEEeCCCCceeEEe
Q 004214          403 TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ-VVITAS-GDKTIKIWSISDGSCLKTF  460 (768)
Q Consensus       403 ~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~t~~-~d~~i~iwd~~~~~~~~~~  460 (768)
                      .|.++|+.+++.+..+.. .....+++|+|||+ +++++. .++.|.+||+.+++.+.++
T Consensus       299 ~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          299 EVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             eEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            799999999999988863 44689999999999 777777 5899999999999998884

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.61  E-value=6.7e-13  Score=134.51  Aligned_cols=311  Identities=14%  Similarity=0.054  Sum_probs=194.9

Q ss_pred             EEEeeCCCccEEEEEe---CCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEe----------CCCeEEEEE
Q 004214           36 ILFHPDTDKSLLFSGS---DDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAG----------RDKVVNLWD  102 (768)
Q Consensus        36 l~~spd~~~~~l~sg~---~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~----------~dg~i~vWd  102 (768)
                      ....|+++..|++...   .++.|.+.|..+++.+.++.....+ . ++++|||++|+.+.          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            4567888874444332   1679999999999999999765555 4 99999999988775          367899999


Q ss_pred             CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214          103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI  182 (768)
Q Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~  182 (768)
                      ..+++.+.+++...          +...                                                    
T Consensus       116 ~~t~~v~~~I~v~~----------g~r~----------------------------------------------------  133 (386)
T 3sjl_D          116 PVTLLPTADIELPD----------APRF----------------------------------------------------  133 (386)
T ss_dssp             TTTCCEEEEEEETT----------CCCC----------------------------------------------------
T ss_pred             CCCCeEEEEEECCC----------cccc----------------------------------------------------
Confidence            99988777664311          0000                                                    


Q ss_pred             cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC--
Q 004214          183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN--  260 (768)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--  260 (768)
                                                                            ........+.++ +++++++++..  
T Consensus       134 ------------------------------------------------------~~g~~P~~~a~s-pDGk~lyVan~~~  158 (386)
T 3sjl_D          134 ------------------------------------------------------LVGTYPWMTSLT-PDGKTLLFYQFSP  158 (386)
T ss_dssp             ------------------------------------------------------CBSCCGGGEEEC-TTSSEEEEEECSS
T ss_pred             ------------------------------------------------------ccCCCCceEEEc-CCCCEEEEEEcCC
Confidence                                                                  000011122333 34455555542  


Q ss_pred             CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-ceEEEeeecc----cCcEE-EEE
Q 004214          261 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGH----MGAVG-AVA  334 (768)
Q Consensus       261 ~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~-~~~  334 (768)
                      ++.|.++|+.+++.+..+.....  ..    ..+.+...+++.+.||.+.+.++.+ ++.......+    ..++. ...
T Consensus       159 ~~~VsVID~~t~~vv~tI~v~g~--~~----~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~  232 (386)
T 3sjl_D          159 APAVGVVDLEGKAFKRMLDVPDC--YH----IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPA  232 (386)
T ss_dssp             SCEEEEEETTTTEEEEEEECCSE--EE----EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCE
T ss_pred             CCeEEEEECCCCcEEEEEECCCc--ce----eecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccce
Confidence            57888888888888877754221  11    3344443477888899999999876 5543221111    12221 135


Q ss_pred             Ee-cCCCcEEEEEeCCCeEEEEeCCCCCCCCccccc-cce-eeEeeccCCCeEEEEEccCCCEEEEEeC----------C
Q 004214          335 FS-KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN-LKA-KAVVAAHGKDINSLAVAPNDSLVCTGSQ----------D  401 (768)
Q Consensus       335 ~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~----------d  401 (768)
                      |. ++|+  ++-.+.+|.|.+.|+.........+.. ... .....-.......++++|+++.+++...          .
T Consensus       233 ~~~~dG~--~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~  310 (386)
T 3sjl_D          233 YSQKAGR--LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS  310 (386)
T ss_dssp             EETTTTE--EEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred             eEcCCCc--EEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCC
Confidence            54 5543  333666899999998754211100000 000 0000001233445778999888888653          2


Q ss_pred             CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCC-EEEEe-eCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeC
Q 004214          402 RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ-VVITA-SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR  475 (768)
Q Consensus       402 g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  475 (768)
                      +.|.++|+.+++.+..+.. ...++.++++||++ +|+++ ..++.|.++|..+++.++++... ..-+.+.+++|
T Consensus       311 ~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          311 RFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             EEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred             CEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence            4799999999999988774 34788999999996 66664 45899999999999999998733 33334566655

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.60  E-value=3.8e-13  Score=137.92  Aligned_cols=278  Identities=9%  Similarity=0.056  Sum_probs=177.0

Q ss_pred             CcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeee
Q 004214           31 GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKL  110 (768)
Q Consensus        31 ~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~  110 (768)
                      ..|.+++|+|++..  ++..+.++.++.|   .++....+..+...+.+++|+|+|+.++++..++.|.+||..+++...
T Consensus         6 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~   80 (333)
T 2dg1_A            6 QDLPTLFYSGKSNS--AVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR   80 (333)
T ss_dssp             CCCCBCCSCGGGGC--SSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred             cccceeeecCCccc--eeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE
Confidence            45778899998776  6666788899999   566777787777788999999999977788888999999987765332


Q ss_pred             eeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcc
Q 004214          111 TVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSK  190 (768)
Q Consensus       111 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  190 (768)
                      ....                                                                            
T Consensus        81 ~~~~----------------------------------------------------------------------------   84 (333)
T 2dg1_A           81 PFVS----------------------------------------------------------------------------   84 (333)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             EeeC----------------------------------------------------------------------------
Confidence            2100                                                                            


Q ss_pred             cceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCC----CcEEE
Q 004214          191 RGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI----EQVQV  266 (768)
Q Consensus       191 ~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~----~~i~i  266 (768)
                                                                     ....+.++++.+ ++.++++...+    +.|.+
T Consensus        85 -----------------------------------------------~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           85 -----------------------------------------------HKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             -----------------------------------------------SSSSEEEEEECT-TSCEEEEECTTSSSCCEEEE
T ss_pred             -----------------------------------------------CCCCcceEEECC-CCcEEEEeCCCCCCCceEEE
Confidence                                                           011233333332 33333333333    46677


Q ss_pred             EECCCceeeeeee--CCccceEEEeeeeecCCCEEEEEEeC------CCeEEEEeCCCceEEEeeecccCcEEEEEEecC
Q 004214          267 YDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSK------DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK  338 (768)
Q Consensus       267 ~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  338 (768)
                      ||..++.....+.  .+...+.++.  +.+++.. +++...      .+.|..++..+++..... .+...+..++|+|+
T Consensus       117 ~d~~~~~~~~~~~~~~~~~~~~~i~--~d~~g~l-~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~d  192 (333)
T 2dg1_A          117 ATENGDNLQDIIEDLSTAYCIDDMV--FDSKGGF-YFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTD  192 (333)
T ss_dssp             ECTTSCSCEEEECSSSSCCCEEEEE--ECTTSCE-EEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTT
T ss_pred             EeCCCCEEEEEEccCccCCcccceE--ECCCCCE-EEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCC
Confidence            7766655442322  2334566665  6666653 444432      356777777665544332 33445788999999


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 004214          339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF  418 (768)
Q Consensus       339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  418 (768)
                      ++.++++.+.++.|.+|++........ ............+ ..+..++++++|+++++...++.|.+||. +++.+..+
T Consensus       193 g~~l~v~~~~~~~i~~~d~~~~g~~~~-~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~  269 (333)
T 2dg1_A          193 EKVLWVTETTANRLHRIALEDDGVTIQ-PFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI  269 (333)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSSSEE-EEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             CCEEEEEeCCCCeEEEEEecCCCcCcc-cccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEE
Confidence            875566666789999999863211000 0000000011111 36788999999998888878899999998 56666666


Q ss_pred             eccCC------CeEEEEEccCCCEEEEeeCCC
Q 004214          419 RGHKR------GIWSVEFSPVDQVVITASGDK  444 (768)
Q Consensus       419 ~~~~~------~v~~v~~s~~~~~l~t~~~d~  444 (768)
                      ..+..      .+.+++|+|+++.|+.++.++
T Consensus       270 ~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          270 LIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             ECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             EcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            64433      689999999987776655543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.60  E-value=9.3e-13  Score=134.25  Aligned_cols=282  Identities=10%  Similarity=-0.034  Sum_probs=181.3

Q ss_pred             CCCcEEEEECCCCEEEEEEE------cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEE
Q 004214            8 ADRKVLVWDVDGGFCTHYFK------GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA   81 (768)
Q Consensus         8 ~dg~i~vwd~~~~~~~~~l~------gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~   81 (768)
                      .++.|.+||..+++....+.      ........+++..  .. +.++...++.|.+||..+++.+.++.. ......++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~--~~-lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~   90 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD--GI-GWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIH   90 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET--TE-EEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC--CE-EEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEE
Confidence            48999999999999765441      1234567888753  33 355566789999999999999988853 45688999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcE
Q 004214           82 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI  161 (768)
Q Consensus        82 fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  161 (768)
                      ++++++..++...++.|.+||..+++....++.....        +                                  
T Consensus        91 ~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~--------~----------------------------------  128 (328)
T 3dsm_A           91 FLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD--------M----------------------------------  128 (328)
T ss_dssp             EEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC--------T----------------------------------
T ss_pred             EeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc--------c----------------------------------
Confidence            9999854444447899999999988766554421100        0                                  


Q ss_pred             EEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCc
Q 004214          162 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE  241 (768)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (768)
                                                                                                  ....
T Consensus       129 ----------------------------------------------------------------------------~~~~  132 (328)
T 3dsm_A          129 ----------------------------------------------------------------------------ESGS  132 (328)
T ss_dssp             ----------------------------------------------------------------------------TTCB
T ss_pred             ----------------------------------------------------------------------------cCCC
Confidence                                                                                        0000


Q ss_pred             eeEEEEecCCCCEEEEEe-CCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC----------CeEE
Q 004214          242 ILDLKFLGEEEQYLAVAT-NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD----------NSVR  310 (768)
Q Consensus       242 i~~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d----------g~i~  310 (768)
                      ...+++  .++.++++.. .++.|.+||..+++....+..... ...+.  +.++++ +++++..+          +.|.
T Consensus       133 p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~-p~~i~--~~~dG~-l~v~~~~~~~~~~~~~~~~~v~  206 (328)
T 3dsm_A          133 TEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ-PTSLV--MDKYNK-MWTITDGGYEGSPYGYEAPSLY  206 (328)
T ss_dssp             CCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC-BCCCE--ECTTSE-EEEEBCCBCTTCSSCBCCCEEE
T ss_pred             cceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC-ccceE--EcCCCC-EEEEECCCccCCccccCCceEE
Confidence            111222  1222222222 367888888888877766654332 23343  445554 35555443          7899


Q ss_pred             EEeCCCceEEEeeecc-cCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214          311 LWDSESRCCVGVGTGH-MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA  389 (768)
Q Consensus       311 iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  389 (768)
                      ++|..+++....+... ......++++|+++. ++++..  .|.+||........        .............++++
T Consensus       207 ~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~-lyv~~~--~v~~~d~~t~~~~~--------~~~~~~~~~~p~gi~vd  275 (328)
T 3dsm_A          207 RIDAETFTVEKQFKFKLGDWPSEVQLNGTRDT-LYWINN--DIWRMPVEADRVPV--------RPFLEFRDTKYYGLTVN  275 (328)
T ss_dssp             EEETTTTEEEEEEECCTTCCCEEEEECTTSCE-EEEESS--SEEEEETTCSSCCS--------SCSBCCCSSCEEEEEEC
T ss_pred             EEECCCCeEEEEEecCCCCCceeEEEecCCCE-EEEEcc--EEEEEECCCCceee--------eeeecCCCCceEEEEEc
Confidence            9999999887666533 236789999998774 555443  89999987543211        00011124568899999


Q ss_pred             c-CCCEEEEE----eCCCcEEEEeCCCCceEEEEeccCCCeEEEEE
Q 004214          390 P-NDSLVCTG----SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEF  430 (768)
Q Consensus       390 ~-~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~  430 (768)
                      | ++.++++.    ..++.|.+||.. ++.+..+.. ......++|
T Consensus       276 p~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P~~~~~  319 (328)
T 3dsm_A          276 PNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIPGAFCW  319 (328)
T ss_dssp             TTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESEEEEEE
T ss_pred             CCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCcceEEE
Confidence            9 55566665    568899999998 888887763 333345554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.58  E-value=5.4e-10  Score=128.70  Aligned_cols=447  Identities=8%  Similarity=0.001  Sum_probs=265.2

Q ss_pred             CCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCcc-c---eeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 004214           30 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-S---RVTSMAITSDGSTLISAGRDKVVNLWDLRD  105 (768)
Q Consensus        30 ~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~-~---~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~  105 (768)
                      ...|.+|...++|.   |-.|+.+| +..||..+++... +.... .   .|.++...++|...+. +. +.|..||..+
T Consensus        87 ~n~I~~i~~d~~g~---lWigT~~G-l~~yd~~~~~f~~-~~~~~~~~~~~i~~i~~d~~g~lwi~-t~-~gl~~~~~~~  159 (795)
T 4a2l_A           87 NDISRIVKTDSQGR---VWIGTRDG-LSRYDEEKDIFQN-FFYEKNGKHLQVNGIEEISPEQLLIS-TP-EGLIMFDIKE  159 (795)
T ss_dssp             CSCEEEEEECTTSC---EEEEESSC-EEEEETTTTEEEE-ECCEETTEECCCCEEEEEETTEEEEE-ET-TEEEEEETTT
T ss_pred             ccceeEEEECCCCC---EEEEeCCc-hheeCCCCCeEEe-ccccccCCCceEEEEEECCCCCEEEE-EC-CceEEEECCC
Confidence            45799999988876   55566666 8999988776433 32211 1   2889998888866554 44 4588999877


Q ss_pred             Ceeeeeeec--cee-EeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214          106 YSCKLTVPT--YEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI  182 (768)
Q Consensus       106 ~~~~~~~~~--~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~  182 (768)
                      ++.......  ... +..+...+++                        .+..++.++.|..|+..++........    
T Consensus       160 ~~~~~~~~~~~~~~~i~~i~~d~~g------------------------~lwigt~~~Gl~~~~~~~~~~~~~~~~----  211 (795)
T 4a2l_A          160 SKFIDDSFSTAMHKTIASTLYRQGD------------------------QIYIGTSTDGLYTYSITQKTFEKVIPI----  211 (795)
T ss_dssp             TEEECSSSCHHHHTCCEEEEEEETT------------------------EEEEEESSSCEEEEETTTCCEEECC------
T ss_pred             CEEEeccCCCCCCcceEEEEECCCC------------------------CEEEEECCCCEEEEeCCCCeEEEecCC----
Confidence            654321110  001 2333333222                        344455554578888776643221100    


Q ss_pred             cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214          183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE  262 (768)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~  262 (768)
                           .....+..+...+ ...+.+++.++.+..|+..................-....|.++...+  ...+.+|+.. 
T Consensus       212 -----~~~~~i~~i~~d~-~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~--~g~lWigt~~-  282 (795)
T 4a2l_A          212 -----LGTKQIQAILQQS-PTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS--QNRLWIGTFN-  282 (795)
T ss_dssp             -------CCCEEEEEEEE-TTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT--TSCEEEEESS-
T ss_pred             -----CCCCeeEEEEEcC-CCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC--CCCEEEEeCC-
Confidence                 0112333333333 445666776666888876543211000000000011234577776643  3456667765 


Q ss_pred             cEEEEECCCceeeeeeeC-------CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee------cccCc
Q 004214          263 QVQVYDLSSMSCSYVLAG-------HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT------GHMGA  329 (768)
Q Consensus       263 ~i~i~d~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~  329 (768)
                      .|.+|+..++........       ....|.++.  .... +. +..|+.++-|..|+..++.......      .....
T Consensus       283 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~--~D~~-g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~  358 (795)
T 4a2l_A          283 DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIF--MDSQ-GG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNV  358 (795)
T ss_dssp             CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEE--ECTT-SC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSS
T ss_pred             hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEE--EeCC-cC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCe
Confidence            689999887765543221       235677774  3343 44 7788888889999876654322211      12456


Q ss_pred             EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe-eccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 004214          330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLVCTGSQDRTACVWR  408 (768)
Q Consensus       330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d  408 (768)
                      |.++...+++.  +..|+.++-|..|+.........   ........ ......|.+++..++|+.|.+|+.++-|..||
T Consensus       359 V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~---~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d  433 (795)
T 4a2l_A          359 VSCIVEDKDKN--LWIGTNDGGLNLYNPITQRFTSY---TLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH  433 (795)
T ss_dssp             EEEEEECTTSC--EEEEESSSCEEEECTTTCCEEEE---CCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             eEEEEECCCCC--EEEEECCCCeEEEcCCCCcEEEE---ecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence            99999888865  66788887899998764311000   00000000 01235789999999988677788877899999


Q ss_pred             CCCCceEEEEe----ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee------cCCCcEEEEEEEeCCCE
Q 004214          409 LPDLVSVVTFR----GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE------GHTSSVLRASFLTRGAQ  478 (768)
Q Consensus       409 ~~~~~~~~~~~----~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~  478 (768)
                      ..+++......    .....|.++...++|++.+...  +-+.+||..+++......      -+...|.++...++|+.
T Consensus       434 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l  511 (795)
T 4a2l_A          434 RNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRL  511 (795)
T ss_dssp             TTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCE
T ss_pred             CCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCE
Confidence            88775433221    1345789999998888666554  458899987765433221      12357888988888876


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEec-------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          479 IVSCGADGLVKLWTVRTGECIATYD-------KHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       479 l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      .+...  +-|..|+..+++.  .+.       .+...|.++...++|..+++.. .| |..|+..+
T Consensus       512 Wigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~~  571 (795)
T 4a2l_A          512 WIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEKD  571 (795)
T ss_dssp             EEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEEETTT
T ss_pred             EEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeECCCC
Confidence            66544  4588899887766  332       1345799999999999777654 34 67788654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.58  E-value=1.2e-12  Score=131.74  Aligned_cols=237  Identities=9%  Similarity=-0.018  Sum_probs=168.8

Q ss_pred             CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214          239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC  318 (768)
Q Consensus       239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  318 (768)
                      .....+++|.+.+..+++++..++.|..|+..++  ...+..+...+.++.  +.+++. ++++...++.|.+||..+++
T Consensus        27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~--~~~dg~-l~v~~~~~~~i~~~d~~~g~  101 (296)
T 3e5z_A           27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHC--LNKQGH-LIACSHGLRRLERQREPGGE  101 (296)
T ss_dssp             CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEE--ECTTCC-EEEEETTTTEEEEECSTTCC
T ss_pred             CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceee--ECCCCc-EEEEecCCCeEEEEcCCCCc
Confidence            3445678888755558888889999999999987  556666777788886  666665 46666667899999998877


Q ss_pred             EEEeeecc----cCcEEEEEEecCCCcEEEEE----e-------------CCCeEEEEeCCCCCCCCccccccceeeEee
Q 004214          319 CVGVGTGH----MGAVGAVAFSKKLQNFLVSG----S-------------SDHTIKVWSFDGLSDDAEQPMNLKAKAVVA  377 (768)
Q Consensus       319 ~~~~~~~~----~~~v~~~~~~~~~~~~l~s~----~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  377 (768)
                      ........    ...+..++++|+|. ++++.    +             ..+.|..++.. +           ......
T Consensus       102 ~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-----------~~~~~~  168 (296)
T 3e5z_A          102 WESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-----------TLSAPI  168 (296)
T ss_dssp             EEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-----------CEEEEE
T ss_pred             EEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-C-----------CEEEee
Confidence            55443321    23456799999976 66653    2             12345444433 1           122233


Q ss_pred             ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCce---EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 004214          378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP-DLVS---VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD  453 (768)
Q Consensus       378 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~  453 (768)
                      .+......++|+|+++.+++.+.++.|.+|++. ++..   ...+..+...+..++++++|+++++.  ++.|.+||.. 
T Consensus       169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-  245 (296)
T 3e5z_A          169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-  245 (296)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-
T ss_pred             cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-
Confidence            455667899999999998777778999999986 4544   23333345567789999999977766  7889999985 


Q ss_pred             CceeEEeecCCCcEEEEEE-EeCCCEEEEEeCCCcEEEEECCCCeE
Q 004214          454 GSCLKTFEGHTSSVLRASF-LTRGAQIVSCGADGLVKLWTVRTGEC  498 (768)
Q Consensus       454 ~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~dg~i~iwd~~~~~~  498 (768)
                      ++.+..+..+.. +++++| .|+++.|++++.++ +.-++..+.+.
T Consensus       246 g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~  289 (296)
T 3e5z_A          246 GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL  289 (296)
T ss_dssp             SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred             CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence            888888887777 999999 48899999888765 44556655543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.58  E-value=9.4e-10  Score=126.70  Aligned_cols=469  Identities=9%  Similarity=0.055  Sum_probs=274.3

Q ss_pred             CcEEEEECCCCEEEEEEEcCC-C---cEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCcc-ce-eEEEEEc
Q 004214           10 RKVLVWDVDGGFCTHYFKGHK-G---VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-SR-VTSMAIT   83 (768)
Q Consensus        10 g~i~vwd~~~~~~~~~l~gh~-~---~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~-~~-V~~l~fs   83 (768)
                      +-+..||..+++... +..+. .   .|.++...++|.   +..++.+ .|..||..+++......++. .. |.++...
T Consensus       107 ~Gl~~yd~~~~~f~~-~~~~~~~~~~~i~~i~~d~~g~---lwi~t~~-gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d  181 (795)
T 4a2l_A          107 DGLSRYDEEKDIFQN-FFYEKNGKHLQVNGIEEISPEQ---LLISTPE-GLIMFDIKESKFIDDSFSTAMHKTIASTLYR  181 (795)
T ss_dssp             SCEEEEETTTTEEEE-ECCEETTEECCCCEEEEEETTE---EEEEETT-EEEEEETTTTEEECSSSCHHHHTCCEEEEEE
T ss_pred             CchheeCCCCCeEEe-ccccccCCCceEEEEEECCCCC---EEEEECC-ceEEEECCCCEEEeccCCCCCCcceEEEEEC
Confidence            448899998876433 33221 1   188999888876   3344444 48999987766433222221 23 8889888


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeeeeeee--cceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcE
Q 004214           84 SDGSTLISAGRDKVVNLWDLRDYSCKLTVP--TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI  161 (768)
Q Consensus        84 ~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  161 (768)
                      +++...+ ++.++.|..|+..+++......  ....+.++...+.+                        .+..++.++.
T Consensus       182 ~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g------------------------~lwigt~~~G  236 (795)
T 4a2l_A          182 QGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPT------------------------RIWVATEGAG  236 (795)
T ss_dssp             ETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETT------------------------EEEEEEBSSC
T ss_pred             CCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCC------------------------CEEEEECCCC
Confidence            8886554 5555458899987765433211  11223333333332                        3445554445


Q ss_pred             EEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCc
Q 004214          162 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE  241 (768)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (768)
                      +..|+..++..........   .........+..+...+ ...+.+++.+ .+.+|+..................-....
T Consensus       237 l~~~~~~~~~~~~~~~~~~---~~~~l~~~~i~~i~~d~-~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~  311 (795)
T 4a2l_A          237 LFLINPKTKEIKNYLHSPS---NPKSISSNYIRSLAMDS-QNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRS  311 (795)
T ss_dssp             EEEEETTTTEEEEECCCTT---CTTSCSCSBEEEEEECT-TSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSC
T ss_pred             eEEEeCCCCeEEEeecCCC---CccccCCCeEEEEEEcC-CCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCc
Confidence            8888887764432211100   00001123344444433 4456666655 67777754332100000000000112345


Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee------CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214          242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA------GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE  315 (768)
Q Consensus       242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~------~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~  315 (768)
                      |.++...  ....+.+|+.++-|..|+..+........      .....|.++.  ...+ +. |..|+.++-|..|+..
T Consensus       312 i~~i~~D--~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~--~d~~-g~-lWiGt~~~Gl~~~~~~  385 (795)
T 4a2l_A          312 VRSIFMD--SQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIV--EDKD-KN-LWIGTNDGGLNLYNPI  385 (795)
T ss_dssp             EEEEEEC--TTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEE--ECTT-SC-EEEEESSSCEEEECTT
T ss_pred             EEEEEEe--CCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEE--ECCC-CC-EEEEECCCCeEEEcCC
Confidence            7777664  34467788888889999876654332211      1234577774  3343 44 7778888889999988


Q ss_pred             CceEEEeeec--------ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEE
Q 004214          316 SRCCVGVGTG--------HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA  387 (768)
Q Consensus       316 ~~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  387 (768)
                      ++........        ....|.+++..+++. +|..|+.++-+..||........... . .    .......|.++.
T Consensus       386 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-~lWigt~~~Gl~~~d~~~~~~~~~~~-~-~----~~l~~~~v~~i~  458 (795)
T 4a2l_A          386 TQRFTSYTLQEDESARGIGSNNIKAVYVDEKKS-LVYIGTHAGGLSILHRNSGQVENFNQ-R-N----SQLVNENVYAIL  458 (795)
T ss_dssp             TCCEEEECCC------CCSCSCEEEEEEETTTT-EEEEEETTTEEEEEETTTCCEEEECT-T-T----SCCSCSCEEEEE
T ss_pred             CCcEEEEecCCCCcccCCCCccEEEEEEcCCCC-EEEEEeCcCceeEEeCCCCcEEEeec-C-C----CCcCCCeeEEEE
Confidence            7765443211        246789999888754 46778887889999876432100000 0 0    002345789999


Q ss_pred             EccCCCEEEEEeCCCcEEEEeCCCCceEEEEec------cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee
Q 004214          388 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG------HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE  461 (768)
Q Consensus       388 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~  461 (768)
                      ..++|.+.+. +. +-+.+||..+++.......      ....|.++...++|++.+...  +-+..||..++..  .+.
T Consensus       459 ~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~  532 (795)
T 4a2l_A          459 PDGEGNLWLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKA  532 (795)
T ss_dssp             ECSSSCEEEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EEC
T ss_pred             ECCCCCEEEE-ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEe
Confidence            9988876554 44 4588999877654332111      235789999999898766554  4588899877665  332


Q ss_pred             -------cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec---c-CCCcEEEEEEcCCCCEEEEEeCCCcE
Q 004214          462 -------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD---K-HEDKIWALAVGKKTEMFATGGSDALV  530 (768)
Q Consensus       462 -------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~-~~~~v~~l~~s~~~~~l~s~~~dg~v  530 (768)
                             .+...|.++...++|+..++.. . -|..||..+++... +.   + ....|.++...++|.+++++ ..| |
T Consensus       533 ~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~G-l  607 (795)
T 4a2l_A          533 SILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST-NRG-I  607 (795)
T ss_dssp             CCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE-TTE-E
T ss_pred             cCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc-CCc-e
Confidence                   1345788888888888665444 3 48889987765443 32   1 23468999999999887766 344 6


Q ss_pred             EEEEcCC
Q 004214          531 NLWHDST  537 (768)
Q Consensus       531 ~vw~~~~  537 (768)
                      ..|+..+
T Consensus       608 ~~~~~~~  614 (795)
T 4a2l_A          608 SCFNPET  614 (795)
T ss_dssp             EEEETTT
T ss_pred             EEEcCCC
Confidence            7777654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.57  E-value=1.9e-12  Score=147.27  Aligned_cols=184  Identities=8%  Similarity=-0.028  Sum_probs=122.2

Q ss_pred             CcEEEEECCCceee--eeeeC--CccceEEEeeeeecCCCEEEEEEeC----CCeEEEEeCCC------ce-EEEeeecc
Q 004214          262 EQVQVYDLSSMSCS--YVLAG--HSEIVLCLDTCALSSGKILIVTGSK----DNSVRLWDSES------RC-CVGVGTGH  326 (768)
Q Consensus       262 ~~i~i~d~~~~~~~--~~~~~--~~~~v~~l~~~~~~~~~~~l~~~~~----dg~i~iwd~~~------~~-~~~~~~~~  326 (768)
                      ..|++|++.++...  ..+..  |...+..+.  ++++++.++++...    +..|++||+.+      +. ....+..+
T Consensus       208 ~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~--~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~  285 (710)
T 2xdw_A          208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE--LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN  285 (710)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCTTCEEEEE--ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred             CEEEEEECCCCcccceEEeccCCCCeEEEEEE--EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC
Confidence            45888888776532  22222  344455665  77888874444431    56899999976      42 34445556


Q ss_pred             cCcEEEEEEecCCCcEEEEEeCC---CeEEEEeCCCCCCCCccccccceeeEeeccCC--CeEEEEEccCCCEEEEEeCC
Q 004214          327 MGAVGAVAFSKKLQNFLVSGSSD---HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK--DINSLAVAPNDSLVCTGSQD  401 (768)
Q Consensus       327 ~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~d  401 (768)
                      ...+.. .|+|+|..+++.+..+   +.|.+||+.....        .....+..|..  .+..++|++++.++++...+
T Consensus       286 ~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~  356 (710)
T 2xdw_A          286 FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE--------SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD  356 (710)
T ss_dssp             SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG--------GGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc--------ccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence            555554 4788887655555443   3699999875310        01122233333  57789999888888888888


Q ss_pred             Cc--EEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee----CCCcEEEEeCCCCce
Q 004214          402 RT--ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS----GDKTIKIWSISDGSC  456 (768)
Q Consensus       402 g~--i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~----~d~~i~iwd~~~~~~  456 (768)
                      +.  |.+|++.+++.+..+..+...+..+.++|++..++...    ..++|++||+.+++.
T Consensus       357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  417 (710)
T 2xdw_A          357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (710)
T ss_dssp             TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             CEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCcc
Confidence            84  66678777887788887878889999999987665332    357899999988773

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.57  E-value=2.2e-12  Score=127.23  Aligned_cols=241  Identities=7%  Similarity=0.012  Sum_probs=177.8

Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeeeeeeCCc-cceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeeccc-C
Q 004214          251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS-EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM-G  328 (768)
Q Consensus       251 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~  328 (768)
                      .++++++++.++.|++||.++++.+..+..+. ..+.++.  +.++++. ++  +.++.|..||. +++.+..+..+. .
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~--~~pdG~i-lv--s~~~~V~~~d~-~G~~~W~~~~~~~~   77 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVA--ATKAGEI-LF--SYSKGAKMITR-DGRELWNIAAPAGC   77 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEE--ECTTSCE-EE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeE--ECCCCCE-EE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence            45788899999999999999999999988765 3566665  6666664 55  45788999999 788888887653 5


Q ss_pred             cEEEEEEecCCCcEEEEEeC-CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 004214          329 AVGAVAFSKKLQNFLVSGSS-DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW  407 (768)
Q Consensus       329 ~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~  407 (768)
                      .+.++.+.++|. ++++.+. ++.|..++.... .....    ........+......+++.++|+++++...++.|..|
T Consensus        78 ~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~~Gk-~l~~~----~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~  151 (276)
T 3no2_A           78 EMQTARILPDGN-ALVAWCGHPSTILEVNMKGE-VLSKT----EFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREI  151 (276)
T ss_dssp             EEEEEEECTTSC-EEEEEESTTEEEEEECTTSC-EEEEE----EECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEE
T ss_pred             cccccEECCCCC-EEEEecCCCCEEEEEeCCCC-EEEEE----eccCCCCcccccccCceECCCCCEEEEecCCCEEEEE
Confidence            788999999977 6777666 777777765321 00000    0000001122345566789999999999999999999


Q ss_pred             eCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC------CcEEEEEEEeCCCEEEE
Q 004214          408 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT------SSVLRASFLTRGAQIVS  481 (768)
Q Consensus       408 d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~s  481 (768)
                      |.. ++.+..+... ..+.++.+.++|+++++++.++.|..+|..+|+.+.++..+.      ..+..++..++|+.+++
T Consensus       152 d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~  229 (276)
T 3no2_A          152 APN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYIC  229 (276)
T ss_dssp             CTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEE
T ss_pred             CCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEE
Confidence            988 9999888764 456678889999999999988899999999999999987432      23788888999998888


Q ss_pred             EeCC--------CcEEEEEC-CCCeEEEEeccC
Q 004214          482 CGAD--------GLVKLWTV-RTGECIATYDKH  505 (768)
Q Consensus       482 ~~~d--------g~i~iwd~-~~~~~~~~~~~~  505 (768)
                      ....        +..+++.+ .+|+.+.++..+
T Consensus       230 ~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~  262 (276)
T 3no2_A          230 NWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDK  262 (276)
T ss_dssp             EECTTCTTGGGSCCCSEEEECTTSBEEEEECCT
T ss_pred             eccCccccccccCCceEEEECCCCCEEEEecCc
Confidence            7421        23456666 578888777643

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.56  E-value=3.1e-13  Score=153.22  Aligned_cols=179  Identities=9%  Similarity=-0.037  Sum_probs=117.6

Q ss_pred             CeEEEEeCCCce----EEEeeecccCcEEEEEEecCCCcEEEEEeCC-C--eEEEEeCCCCCCCCccccccceeeEeecc
Q 004214          307 NSVRLWDSESRC----CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-H--TIKVWSFDGLSDDAEQPMNLKAKAVVAAH  379 (768)
Q Consensus       307 g~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  379 (768)
                      ..|++|++.++.    ++.....|...+..+.|+|+|+.++++...+ +  .|.+|+...+           ....+..+
T Consensus       202 ~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~-----------~~~~l~~~  270 (695)
T 2bkl_A          202 TTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK-----------DFRLLVKG  270 (695)
T ss_dssp             CEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-----------SCEEEEEC
T ss_pred             CEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-----------ceEEeecC
Confidence            348899988765    3444445667889999999988544444333 3  4555543211           12223334


Q ss_pred             CCCeEEEEEccCCCEEEEEe---CCCcEEEEeCCCCce--EEEEecc--CCCeEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 004214          380 GKDINSLAVAPNDSLVCTGS---QDRTACVWRLPDLVS--VVTFRGH--KRGIWSVEFSPVDQVVITASGDKTIKIWSIS  452 (768)
Q Consensus       380 ~~~i~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~--~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~  452 (768)
                      ...+....+ ++|.+++.+.   .++.|.+||+.++..  ...+..+  ...+..++|+ ++.++++...|+..+||.+.
T Consensus       271 ~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          271 VGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             SSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             CCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            445555556 6666444433   257899999987653  2333333  4568888998 67888999999988888654


Q ss_pred             -CCceeEEeecC-CCcEEEEEEEeCCCEEEEEe----CCCcEEEEECCCCeE
Q 004214          453 -DGSCLKTFEGH-TSSVLRASFLTRGAQIVSCG----ADGLVKLWTVRTGEC  498 (768)
Q Consensus       453 -~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~----~dg~i~iwd~~~~~~  498 (768)
                       ++.....+..+ ...+..+.++|+++.++...    ..++|++||+.+++.
T Consensus       349 ~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          349 LKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             TTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             CCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence             46666777655 66778888999998776332    347899999988764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.55  E-value=2.7e-13  Score=153.72  Aligned_cols=275  Identities=8%  Similarity=-0.068  Sum_probs=179.2

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCceeeeeee------CCccceEEEeeeeecCCCEEEEEEeC----CCeEEEEeCC
Q 004214          251 EEQYLAVATNI-----EQVQVYDLSSMSCSYVLA------GHSEIVLCLDTCALSSGKILIVTGSK----DNSVRLWDSE  315 (768)
Q Consensus       251 ~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~------~~~~~v~~l~~~~~~~~~~~l~~~~~----dg~i~iwd~~  315 (768)
                      ++.+++....+     +.+.+.+...+.....+.      +|...+.++.  ++|+++.++++.+.    +..|++||+.
T Consensus        78 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~--~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           78 RNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWA--VSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             ETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEE--ECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             ECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEE--ECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            44555544432     234445544444333332      3555677776  77888874444433    4589999999


Q ss_pred             CceEEEeeecccCcE--EEEEEecCCCcEEEEEeCCCe-------------EEEEeCCCCCCCCccccccceeeEeeccC
Q 004214          316 SRCCVGVGTGHMGAV--GAVAFSKKLQNFLVSGSSDHT-------------IKVWSFDGLSDDAEQPMNLKAKAVVAAHG  380 (768)
Q Consensus       316 ~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~s~~~dg~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  380 (768)
                      +++.+.  ..+...+  ..++|+|+|+ .|+.++.|..             |++|++.+....      .........+.
T Consensus       156 tg~~~~--~~~~~~~~~~~~~wspDg~-~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~------~~lv~~~~~~~  226 (695)
T 2bkl_A          156 SGEWSK--VDVIEGGKYATPKWTPDSK-GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK------DTVVHERTGDP  226 (695)
T ss_dssp             TCCBCS--SCCBSCCTTCCCEECTTSS-EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG------CEEEECCCCCT
T ss_pred             CCCCcC--CcccCcccccceEEecCCC-EEEEEEecCCCCCccccCCCCCEEEEEECCCCchh------ceEEEecCCCC
Confidence            987651  1122222  6789999987 5777777665             999998754210      01111222344


Q ss_pred             CCeEEEEEccCCCEEEEEeCCC----cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee---CCCcEEEEeCCC
Q 004214          381 KDINSLAVAPNDSLVCTGSQDR----TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS---GDKTIKIWSISD  453 (768)
Q Consensus       381 ~~i~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~---~d~~i~iwd~~~  453 (768)
                      ..+.++.|+|||++|+.++.++    .|.+|+..++. ...+..+...+....+ ++|.+++.+.   .++.|.+||+.+
T Consensus       227 ~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~  304 (695)
T 2bkl_A          227 TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAK  304 (695)
T ss_dssp             TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTB
T ss_pred             EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCC
Confidence            6788999999999998887666    67777766554 3445556666666666 5666444443   258899999988


Q ss_pred             Cce--eEEeecC--CCcEEEEEEEeCCCEEEEEeCCCcEEEEECC-CCeEEEEeccC-CCcEEEEEEcCCCCEEEEE---
Q 004214          454 GSC--LKTFEGH--TSSVLRASFLTRGAQIVSCGADGLVKLWTVR-TGECIATYDKH-EDKIWALAVGKKTEMFATG---  524 (768)
Q Consensus       454 ~~~--~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~l~~s~~~~~l~s~---  524 (768)
                      +..  ...+..+  ...+..+.|+ ++.++++...|+..+||.+. +++....+..+ .+.+..++++|++..++..   
T Consensus       305 ~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss  383 (695)
T 2bkl_A          305 PARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTS  383 (695)
T ss_dssp             CSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEE
T ss_pred             CCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcC
Confidence            763  2344333  4567888888 67788888999988888665 46666666655 6678888999999877733   


Q ss_pred             -eCCCcEEEEEcCCHH
Q 004214          525 -GSDALVNLWHDSTAA  539 (768)
Q Consensus       525 -~~dg~v~vw~~~~~~  539 (768)
                       ...+.|++|++.+++
T Consensus       384 ~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          384 FTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             TTEEEEEEEEETTTCC
T ss_pred             CCCCCEEEEEECCCCc
Confidence             235789999987754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.55  E-value=6.5e-11  Score=119.01  Aligned_cols=282  Identities=8%  Similarity=-0.015  Sum_probs=176.9

Q ss_pred             EEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEE-EecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 004214           26 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA-TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR  104 (768)
Q Consensus        26 l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~-~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~  104 (768)
                      +..+...+.++++.|+|+.  .++...++.|.+||.. ++... .+..+...+.+++++++|..+++...++.|..||..
T Consensus        10 ~~~~~~~~~~i~~d~~g~l--~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKV--WITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCE--EEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CCCcCCCccceEECCCCCE--EEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            4456678999999999874  5555557899999988 55433 223355679999999999988877777888888865


Q ss_pred             CCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecc
Q 004214          105 DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF  184 (768)
Q Consensus       105 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~  184 (768)
                       ++. ..+..          +.                                                          
T Consensus        87 -g~~-~~~~~----------~~----------------------------------------------------------   96 (299)
T 2z2n_A           87 -GII-KEYTL----------PN----------------------------------------------------------   96 (299)
T ss_dssp             -SCE-EEEEC----------SS----------------------------------------------------------
T ss_pred             -CcE-EEEeC----------CC----------------------------------------------------------
Confidence             221 11100          00                                                          


Q ss_pred             cccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcE
Q 004214          185 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV  264 (768)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i  264 (768)
                                                                           ....+..+++.+ ++.++++...++.|
T Consensus        97 -----------------------------------------------------~~~~~~~i~~~~-~g~l~v~~~~~~~i  122 (299)
T 2z2n_A           97 -----------------------------------------------------PDSAPYGITEGP-NGDIWFTEMNGNRI  122 (299)
T ss_dssp             -----------------------------------------------------TTCCEEEEEECT-TSCEEEEETTTTEE
T ss_pred             -----------------------------------------------------cCCCceeeEECC-CCCEEEEecCCceE
Confidence                                                                 001122333332 33344444445566


Q ss_pred             EEEECCCceeee-eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe-eecccCcEEEEEEecCCCcE
Q 004214          265 QVYDLSSMSCSY-VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV-GTGHMGAVGAVAFSKKLQNF  342 (768)
Q Consensus       265 ~i~d~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~  342 (768)
                      ..||. ++.... ....+...+.++.  ..+++. +.++...++.|..||. +++.... ...+...+.++++.+++. +
T Consensus       123 ~~~d~-~g~~~~~~~~~~~~~~~~i~--~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l  196 (299)
T 2z2n_A          123 GRITD-DGKIREYELPNKGSYPSFIT--LGSDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-L  196 (299)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEE--ECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-E
T ss_pred             EEECC-CCCEEEecCCCCCCCCceEE--EcCCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-E
Confidence            66666 333222 1222334566665  555554 3565666789999999 6655443 333455688999999866 6


Q ss_pred             EEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEE--ec
Q 004214          343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF--RG  420 (768)
Q Consensus       343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~  420 (768)
                      +++...++.|..|+. .+.        . .......+...+.+++++++|+++++...++.|..||. ++.. ..+  ..
T Consensus       197 ~v~~~~~~~i~~~~~-~g~--------~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~  264 (299)
T 2z2n_A          197 WFVEIIGNKIGRITT-SGE--------I-TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQI  264 (299)
T ss_dssp             EEEETTTTEEEEECT-TCC--------E-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSS
T ss_pred             EEEccCCceEEEECC-CCc--------E-EEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCC
Confidence            666666889999987 321        0 11111234467899999999987776667789999998 4433 333  34


Q ss_pred             cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214          421 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG  454 (768)
Q Consensus       421 ~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~  454 (768)
                      +...+.++++ +++++.++.. .+.+..++..++
T Consensus       265 ~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          265 KSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             SSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred             CCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence            4567899999 8888777765 467777777654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.53  E-value=6.9e-12  Score=127.13  Aligned_cols=281  Identities=13%  Similarity=0.036  Sum_probs=183.6

Q ss_pred             CCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEE--------eCCCcEEEEECCCCeeEEEecCcc------
Q 004214            9 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG--------SDDATVRVWDLLAKKCVATLDKHF------   74 (768)
Q Consensus         9 dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg--------~~dg~I~iWd~~~~~~~~~l~~h~------   74 (768)
                      ++.|.+.|..+++.+..+.....+ . ++++|||++.+++..        ..++.|.+||..+++.+.++.-..      
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~  135 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV  135 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred             CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccccc
Confidence            679999999999999998865555 4 999999998555542        246789999999999998875321      


Q ss_pred             -ceeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcce
Q 004214           75 -SRVTSMAITSDGSTLISAGR--DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEI  151 (768)
Q Consensus        75 -~~V~~l~fs~d~~~L~s~~~--dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (768)
                       .....++|+|||++|+.+..  ++.|.++|+.+++.+.+++....   ....|.+.                      .
T Consensus       136 g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~----------------------~  190 (386)
T 3sjl_D          136 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAP----------------------D  190 (386)
T ss_dssp             SCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEET----------------------T
T ss_pred             CCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCC----------------------c
Confidence             24667999999999998864  68999999999999999876432   11222221                      2


Q ss_pred             EEEEeeCCcEEEEEEcCC-ceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeE
Q 004214          152 HFITVGERGIVRMWNADS-ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI  230 (768)
Q Consensus       152 ~~~~~~~~g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~  230 (768)
                      .+++.+.||.+.+.++.. +.+.....    ..+. .....-+....|.+....++.++.+|.+++++............
T Consensus       191 ~~~~~~~DG~~~~v~~~~~g~v~~~~~----~~~~-~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~  265 (386)
T 3sjl_D          191 TFFMHCRDGSLAKVAFGTEGTPEITHT----EVFH-PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV  265 (386)
T ss_dssp             EEEEEETTSCEEEEECCSSSCCEEEEC----CCCS-CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred             eeEEECCCCCEEEEECCCCCeEEEeec----ceec-cccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecce
Confidence            577888899999999876 44421111    0000 01111111224434444666677889999998765431110000


Q ss_pred             E-Ee---eecc-cCCceeEEEEecCCCCEEEEEeC----------CCcEEEEECCCceeeeeeeCCccceEEEeeeeecC
Q 004214          231 L-SK---RLVG-YNEEILDLKFLGEEEQYLAVATN----------IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS  295 (768)
Q Consensus       231 ~-~~---~~~~-~~~~i~~~~~~~~~~~~l~~~~~----------~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~  295 (768)
                      . ..   ...+ ..+....+++.+ +++.+++...          .+.|.++|+.+++.+..+.... .+..+.  +.++
T Consensus       266 ~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~la--vs~D  341 (386)
T 3sjl_D          266 EALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSIN--VSQD  341 (386)
T ss_dssp             ESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEE--ECSS
T ss_pred             eccccccccccccCCCcceeeECC-CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceEE--ECCC
Confidence            0 00   0000 112223455554 5555555432          2579999999999988876432 455665  7777


Q ss_pred             CCEEEEE-EeCCCeEEEEeCCCceEEEeeec
Q 004214          296 GKILIVT-GSKDNSVRLWDSESRCCVGVGTG  325 (768)
Q Consensus       296 ~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~  325 (768)
                      ++.+|++ ...++.|.++|..+++.+..+..
T Consensus       342 ~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~  372 (386)
T 3sjl_D          342 EKPLLYALSTGDKTLYIHDAESGEELRSVNQ  372 (386)
T ss_dssp             SSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             CCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence            7633544 55689999999999999888764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.52  E-value=2.7e-12  Score=127.12  Aligned_cols=241  Identities=10%  Similarity=-0.005  Sum_probs=164.4

Q ss_pred             ceeEEEEecCCCCEEE-EEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE
Q 004214          241 EILDLKFLGEEEQYLA-VATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC  319 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~-~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  319 (768)
                      ....+++.+ ++.+++ +.+.++.|.+|+..+.........+...+.+++  +.+++. ++++.. ++.|.+||......
T Consensus        25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~--~~~~g~-l~v~~~-~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLA--VDGAGT-VYVTDF-NNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEE--ECTTCC-EEEEET-TTEEEEECTTCSCC
T ss_pred             CccceEECC-CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeE--ECCCCC-EEEEcC-CCEEEEEeCCCceE
Confidence            556777765 455555 446778999999876554332223334455665  555555 355544 88999999887654


Q ss_pred             EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe
Q 004214          320 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS  399 (768)
Q Consensus       320 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  399 (768)
                      ..........+..+++++++. ++++...++.|.+|+.....          ...........+.+++++|+|+++++..
T Consensus       100 ~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~p~~i~~~~~g~l~v~~~  168 (270)
T 1rwi_B          100 TVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKT----------QTVLPFTGLNDPDGVAVDNSGNVYVTDT  168 (270)
T ss_dssp             EECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCS----------CEECCCCSCCSCCCEEECTTCCEEEEEG
T ss_pred             eeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCce----------eEeeccccCCCceeEEEeCCCCEEEEEC
Confidence            433223346789999999876 67777778899999654221          1111112234578899999999777777


Q ss_pred             CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEE
Q 004214          400 QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQI  479 (768)
Q Consensus       400 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  479 (768)
                      .++.|.+||............+...+.+++++++|.++++...++.|.+||............+...+.+++++++|+.+
T Consensus       169 ~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~  248 (270)
T 1rwi_B          169 DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVY  248 (270)
T ss_dssp             GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEE
T ss_pred             CCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEE
Confidence            78899999988765544333344678999999999888888788999999986554433222344678999999999988


Q ss_pred             EEEeCCCcEEEEECCCCe
Q 004214          480 VSCGADGLVKLWTVRTGE  497 (768)
Q Consensus       480 ~s~~~dg~i~iwd~~~~~  497 (768)
                      ++...++.|++++....+
T Consensus       249 v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          249 VADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EEEGGGTEEEEECCCGGG
T ss_pred             EEECCCCEEEEEcCCCcc
Confidence            888889999999987654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.52  E-value=1.9e-10  Score=115.68  Aligned_cols=275  Identities=7%  Similarity=-0.037  Sum_probs=186.5

Q ss_pred             CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeee-eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc
Q 004214          239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY-VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR  317 (768)
Q Consensus       239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  317 (768)
                      ...+.++++.+ ++.++++...++.|.+||.. ++... .+..+...+.++.  ..+++. +.++...++.|..||.. +
T Consensus        19 ~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~--~~~~g~-l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           19 DSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLI--VSSLGD-IWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             TCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEE--ECTTSC-EEEEETTTTEEEEECTT-S
T ss_pred             CCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEE--ECCCCC-EEEEecCCCeEEEECCC-C
Confidence            44667777764 55666666667999999988 54433 2233335667775  555554 35555567899999988 5


Q ss_pred             eEEEe-eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214          318 CCVGV-GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC  396 (768)
Q Consensus       318 ~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  396 (768)
                      +.... .......+.++++.+++. ++++...++.|..|+.. +.        .. ..........+.++++++++++.+
T Consensus        93 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~--------~~-~~~~~~~~~~~~~i~~d~~g~l~v  161 (300)
T 2qc5_A           93 GFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GT--------IY-EYDLPNKGSYPAFITLGSDNALWF  161 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SC--------EE-EEECSSTTCCEEEEEECTTSSEEE
T ss_pred             CeEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CC--------EE-EccCCCCCCCceeEEECCCCCEEE
Confidence            44322 222346789999999865 66666668889999875 21        00 111122345688999999999777


Q ss_pred             EEeCCCcEEEEeCCCCceEEE-EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEE-eecCCCcEEEEEEEe
Q 004214          397 TGSQDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-FEGHTSSVLRASFLT  474 (768)
Q Consensus       397 ~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~  474 (768)
                      +...++.|..|+. +++.... ...+...+..++++++|++.++....+.|.+||. ++..... +..+...+.++++.+
T Consensus       162 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~  239 (300)
T 2qc5_A          162 TENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGK  239 (300)
T ss_dssp             EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS
T ss_pred             EecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECC
Confidence            6666788999998 5544332 2234456889999999988887777788999998 5554432 334556788999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEE-EeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214          475 RGAQIVSCGADGLVKLWTVRTGECIA-TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       475 ~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~  535 (768)
                      +|+..++...++.|..|+. +++... .+......+.+++++++|..+++.. . .|..++.
T Consensus       240 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          240 NSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             TTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             CCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            9987777666789999998 454332 2333445688999999999777665 4 6666654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.50  E-value=7e-12  Score=129.65  Aligned_cols=280  Identities=14%  Similarity=0.062  Sum_probs=179.5

Q ss_pred             CcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeeeeecceeEeeEEe
Q 004214           54 ATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAG----------RDKVVNLWDLRDYSCKLTVPTYEMVEAVCA  123 (768)
Q Consensus        54 g~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~----------~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~  123 (768)
                      +.|.+.|..+++.+.++.....+  .++++|||++|+.+.          .++.|.++|..+++.+.+++........  
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~--  174 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL--  174 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC--
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc--
Confidence            79999999999999999765555  899999999988775          4678999999998877766532000000  


Q ss_pred             cCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCC
Q 004214          124 IPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQ  203 (768)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (768)
                                                                                                      
T Consensus       175 --------------------------------------------------------------------------------  174 (426)
T 3c75_H          175 --------------------------------------------------------------------------------  174 (426)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeC--CCcEEEEECCCceeeeeeeCC
Q 004214          204 GLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN--IEQVQVYDLSSMSCSYVLAGH  281 (768)
Q Consensus       204 ~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--~~~i~i~d~~~~~~~~~~~~~  281 (768)
                                                        .......+.++ +++++++++..  ++.|.++|+.+++.+..+...
T Consensus       175 ----------------------------------~g~~P~~~~~s-pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~  219 (426)
T 3c75_H          175 ----------------------------------VGTYQWMNALT-PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP  219 (426)
T ss_dssp             ----------------------------------BSCCGGGSEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred             ----------------------------------cCCCcceEEEc-CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC
Confidence                                              00001122222 35555555542  467888888888887776542


Q ss_pred             ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe----eecccCcE-EEEEEecCCCcEEEEEeCCCeEEEEe
Q 004214          282 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV----GTGHMGAV-GAVAFSKKLQNFLVSGSSDHTIKVWS  356 (768)
Q Consensus       282 ~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v-~~~~~~~~~~~~l~s~~~dg~i~iwd  356 (768)
                      ..    ..  ..+.+...+++.+.||.+.+.+..+++....    +.....++ ..+.+.+++..++ ..+..+.|.+.|
T Consensus       220 g~----~~--~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~-~~s~~g~V~ViD  292 (426)
T 3c75_H          220 DC----YH--IFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLV-WPTYTGKIFQAD  292 (426)
T ss_dssp             SE----EE--EEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEE-EEBTTSEEEEEE
T ss_pred             Cc----ee--eccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEE-EEeCCCcEEEEe
Confidence            21    11  2333434467777888888888866655422    11111221 2346788877544 446678999999


Q ss_pred             CCCCCCCCccccccc--eeeEeeccCCCeEEEEEccCCCEEEEEeC----------CCcEEEEeCCCCceEEEEeccCCC
Q 004214          357 FDGLSDDAEQPMNLK--AKAVVAAHGKDINSLAVAPNDSLVCTGSQ----------DRTACVWRLPDLVSVVTFRGHKRG  424 (768)
Q Consensus       357 ~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~  424 (768)
                      +..............  ..............++++|+++.+++...          ++.|.++|..+.+.+..+... ..
T Consensus       293 ~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~  371 (426)
T 3c75_H          293 LTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HE  371 (426)
T ss_dssp             ECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EE
T ss_pred             ccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CC
Confidence            864321000000000  00000001112224689999887777642          357999999999999988743 35


Q ss_pred             eEEEEEccCCC-EEEEee-CCCcEEEEeCCCCceeEEe
Q 004214          425 IWSVEFSPVDQ-VVITAS-GDKTIKIWSISDGSCLKTF  460 (768)
Q Consensus       425 v~~v~~s~~~~-~l~t~~-~d~~i~iwd~~~~~~~~~~  460 (768)
                      .+.++|+|+|+ +++++. .++.|.++|+.+++.++++
T Consensus       372 P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          372 IDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             ECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             cCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            88999999999 888887 5899999999999999987

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.50  E-value=1.5e-11  Score=124.72  Aligned_cols=241  Identities=11%  Similarity=-0.002  Sum_probs=164.2

Q ss_pred             ceEEEeeeeecCCCEEEEE-------EeCCCeEEEEeCCCceEEEeee----cccCcEEEEEEecC-CCcEEEEEeCCCe
Q 004214          284 IVLCLDTCALSSGKILIVT-------GSKDNSVRLWDSESRCCVGVGT----GHMGAVGAVAFSKK-LQNFLVSGSSDHT  351 (768)
Q Consensus       284 ~v~~l~~~~~~~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~~l~s~~~dg~  351 (768)
                      ...+++  +.+++. ++++       +..++.|.+||..+++......    ++...+.+++++++ +.  +..++..+.
T Consensus        19 ~~~~~~--~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~--l~v~~~~~~   93 (314)
T 1pjx_A           19 GAEGPV--FDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ--LFVADMRLG   93 (314)
T ss_dssp             TCEEEE--ECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE--EEEEETTTE
T ss_pred             CccCce--ECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc--EEEEECCCC
Confidence            345554  555554 3555       4678899999988877643322    25567899999998 54  444444557


Q ss_pred             EEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC---------------CcEEEEeCCCCceEE
Q 004214          352 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD---------------RTACVWRLPDLVSVV  416 (768)
Q Consensus       352 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~  416 (768)
                      |..||.. +....... .    .........+.+++++|+|+++++...+               +.|..|+.. ++...
T Consensus        94 l~~~d~~-g~~~~~~~-~----~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~  166 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAK-K----DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ  166 (314)
T ss_dssp             EEEEETT-SCEEECCS-B----CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred             EEEEeCC-CCEEEEEe-c----cCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence            8889876 32100000 0    0000122457899999999888776654               567777765 54433


Q ss_pred             EEeccCCCeEEEEEc----cCCCEEEEe-eCCCcEEEEeCC-CCc-----eeEEeecCC-CcEEEEEEEeCCCEEEEEeC
Q 004214          417 TFRGHKRGIWSVEFS----PVDQVVITA-SGDKTIKIWSIS-DGS-----CLKTFEGHT-SSVLRASFLTRGAQIVSCGA  484 (768)
Q Consensus       417 ~~~~~~~~v~~v~~s----~~~~~l~t~-~~d~~i~iwd~~-~~~-----~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~  484 (768)
                       +..+......++|+    |+++.++.+ ..++.|.+||+. ++.     ....+.++. ..+..++++++|+++++...
T Consensus       167 -~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~  245 (314)
T 1pjx_A          167 -VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             -EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             -eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence             33344556889999    999765544 567899999986 454     233344444 66788999999998888878


Q ss_pred             CCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEEcCC
Q 004214          485 DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF-ATGGSDALVNLWHDST  537 (768)
Q Consensus       485 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~s~~~dg~v~vw~~~~  537 (768)
                      ++.|.+||..+++.+..+..+...+.+++|+|+++.| ++...++.|..|+...
T Consensus       246 ~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          246 SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            8899999998788777777677889999999999955 5555678899998764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.49  E-value=1.3e-10  Score=119.85  Aligned_cols=269  Identities=10%  Similarity=-0.024  Sum_probs=179.4

Q ss_pred             CCCCEEEEEeC--CC---cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEe---------CCCeEEEEeCC
Q 004214          250 EEEQYLAVATN--IE---QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS---------KDNSVRLWDSE  315 (768)
Q Consensus       250 ~~~~~l~~~~~--~~---~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~---------~dg~i~iwd~~  315 (768)
                      +++.++.++..  ..   .|.+||..+++.+..+.....+  .+.  ++++++.+.++..         .++.|.+||..
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~--~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~  105 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPV--AAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeE--ECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence            45555655543  22   7899999999988777654444  555  7788887444432         36789999999


Q ss_pred             CceEEEeeecc-------cCcEEEEEEecCCCcEEEEEe-C-CCeEEEEeCCCCCCCCccccccceeeE-eeccCCCeEE
Q 004214          316 SRCCVGVGTGH-------MGAVGAVAFSKKLQNFLVSGS-S-DHTIKVWSFDGLSDDAEQPMNLKAKAV-VAAHGKDINS  385 (768)
Q Consensus       316 ~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~  385 (768)
                      +.+.+..+...       ......++++|+|+. ++++. . ++.|.++| ....          .... .. ..   .+
T Consensus       106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~-l~v~n~~~~~~v~viD-~t~~----------~~~~~i~-~~---~~  169 (373)
T 2mad_H          106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNAD-LLFFQFAAGPAVGLVV-QGGS----------SDDQLLS-SP---TC  169 (373)
T ss_pred             CCcEEEEEECCCccccccCCCccceEECCCCCE-EEEEecCCCCeEEEEE-CCCC----------EEeEEcC-CC---ce
Confidence            88877665432       123457899999885 55544 3 58899999 7542          1111 11 11   12


Q ss_pred             EEEccCC-CEEEEEeCCCcEEEEeCCCCceEEEEe-----ccCCCe-EEEEEccCCCEEEEeeCCCcEEEEeCCCCc--e
Q 004214          386 LAVAPND-SLVCTGSQDRTACVWRLPDLVSVVTFR-----GHKRGI-WSVEFSPVDQVVITASGDKTIKIWSISDGS--C  456 (768)
Q Consensus       386 ~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v-~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~--~  456 (768)
                      +.+.|++ +.+++.+.||.+.++|. +++......     ....++ ....+.+++..++..+..+.+.+.|+..+.  .
T Consensus       170 ~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v  248 (373)
T 2mad_H          170 YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATN  248 (373)
T ss_pred             EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceE
Confidence            4455554 45667778999999999 877664322     111221 234567766554444567899999987553  2


Q ss_pred             eEEeec----------CCCcEEEEEEEeCCCEEEEEeC----------CCcEEEEECCCCeEEEEeccCCCcEEEEEEcC
Q 004214          457 LKTFEG----------HTSSVLRASFLTRGAQIVSCGA----------DGLVKLWTVRTGECIATYDKHEDKIWALAVGK  516 (768)
Q Consensus       457 ~~~~~~----------~~~~v~~~~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~  516 (768)
                      +..+.-          .......+.++|+++.++++..          ++.|.++|..+++.+.++. -....++++|+|
T Consensus       249 ~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~  327 (373)
T 2mad_H          249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQ  327 (373)
T ss_pred             eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECC
Confidence            233321          1122344788999998877653          3579999999999999996 344689999999


Q ss_pred             CCC-EEEEEe-CCCcEEEEEcCCHHH
Q 004214          517 KTE-MFATGG-SDALVNLWHDSTAAE  540 (768)
Q Consensus       517 ~~~-~l~s~~-~dg~v~vw~~~~~~~  540 (768)
                      ||+ .++++. .++.|.+||..+.+.
T Consensus       328 Dg~~~l~v~~~~~~~V~ViD~~t~~v  353 (373)
T 2mad_H          328 DGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             CCCeEEEEEcCCCCeEEEEECCCCCE
Confidence            999 777776 589999999988654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.48  E-value=3.5e-08  Score=113.30  Aligned_cols=454  Identities=10%  Similarity=0.032  Sum_probs=259.7

Q ss_pred             CcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEe-c---C---ccceeEEEEEcC--CCCEEEEEeCCCeEEEE
Q 004214           31 GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-D---K---HFSRVTSMAITS--DGSTLISAGRDKVVNLW  101 (768)
Q Consensus        31 ~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l-~---~---h~~~V~~l~fs~--d~~~L~s~~~dg~i~vW  101 (768)
                      ..|.+|...++|..  |-.|+.++-+..||..+++..... .   .   ....|.++....  +|. |..++.++.|..+
T Consensus        66 n~I~~i~~d~~g~~--lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~-lwi~t~~~gl~~~  142 (781)
T 3v9f_A           66 NELNEVYTDPVQPV--IWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG-LWVCTYYRGIEYL  142 (781)
T ss_dssp             SCEEEEEECSSSSE--EEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE-EEEEESSSCEEEE
T ss_pred             cccceEEEcCCCCE--EEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC-EEEEECCCCeeEE
Confidence            35999988887763  445666745999999877654331 1   0   123688888877  665 5555544458889


Q ss_pred             ECCCCeeeeeeec------ceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeee
Q 004214          102 DLRDYSCKLTVPT------YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ  175 (768)
Q Consensus       102 d~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~  175 (768)
                      |..+++.......      ...+.++...+.+                        .+..++.++.|..|+..++.....
T Consensus       143 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g------------------------~lwigt~~~Gl~~~~~~~~~~~~~  198 (781)
T 3v9f_A          143 DIATGKFTHYNKSTVPALPSEQTWTATEAEDG------------------------KLYIGHVEGGLSILSLNDKSVKHF  198 (781)
T ss_dssp             ETTTTEEEEESTTTCTTCSCCCEEEEEEEETT------------------------EEEEEETTTEEEEEETTTTEEEEE
T ss_pred             ECCCCeEEeeccCcccCCCccceEEEEECCCC------------------------CEEEEecCCCeEEEcCCCCceEee
Confidence            9877654322110      1112233322222                        455566665688888877644321


Q ss_pred             cCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEE
Q 004214          176 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL  255 (768)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  255 (768)
                      ......   ........+..+... ....+.+++.+ .+..|+.......................|.++...  ....+
T Consensus       199 ~~~~~~---~~~l~~~~i~~i~~d-~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d--~~g~l  271 (781)
T 3v9f_A          199 VHDPQN---PNSLPGNDVRCIYKD-TNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQL--KDNKL  271 (781)
T ss_dssp             CC-----------CCSSEEEEEEC-TTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEEC--TTSEE
T ss_pred             ecCCCC---cccCCCCceeEEEEc-CCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEEC--CCCCE
Confidence            110000   000011233333333 34456666655 688887654321111100000001123457777654  44577


Q ss_pred             EEEeCCCcEEEEECCCceeeeeee--------------CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE
Q 004214          256 AVATNIEQVQVYDLSSMSCSYVLA--------------GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG  321 (768)
Q Consensus       256 ~~~~~~~~i~i~d~~~~~~~~~~~--------------~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  321 (768)
                      .+|+..+-|.+++..+........              .....|.++.  .... +. |..|+.++-|..++..++....
T Consensus       272 Wigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~--~D~~-g~-lWigt~~~Gl~~~~~~~~~~~~  347 (781)
T 3v9f_A          272 WIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIF--QDSF-NN-IWIGTWGGGINFISNAPPTFHT  347 (781)
T ss_dssp             EEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEE--ECSS-CC-EEEEEBSSCEEEECSSCCSCEE
T ss_pred             EEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEE--EeCC-CC-EEEEecCCeEEEeCCCCCccee
Confidence            788886788999987765432211              1345677774  3333 34 7788888889999887654332


Q ss_pred             ee---------ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214          322 VG---------TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND  392 (768)
Q Consensus       322 ~~---------~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  392 (768)
                      ..         ......|.+++..+++.  +..|+.++-|..|+........     .  ..........|.++...++|
T Consensus       348 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~-----~--~~~~~~~~~~v~~i~~d~~g  418 (781)
T 3v9f_A          348 WSYSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVAIY-----N--KENRELLSNSVLCSLKDSEG  418 (781)
T ss_dssp             EC----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEEEC-----C-------CCCSBEEEEEECTTS
T ss_pred             eccCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeEEE-----c--cCCCCCCCcceEEEEECCCC
Confidence            21         11345689999888765  6677767778888865321000     0  00001234678999988887


Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEEe--ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC-----CC
Q 004214          393 SLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH-----TS  465 (768)
Q Consensus       393 ~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-----~~  465 (768)
                      .+.+ |+.++-+..++..+++......  .....|.++...+++.+.+. +. +-|..||..+++........     ..
T Consensus       419 ~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~  495 (781)
T 3v9f_A          419 NLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLEN  495 (781)
T ss_dssp             CEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCS
T ss_pred             CEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccc
Confidence            6554 6776779999987765432211  13457899998888875554 44 55899998776654333222     46


Q ss_pred             cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc----CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          466 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK----HEDKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       466 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      .|.++...++|+..+.....| |..||..+++... +..    ....|.++...++|...++.. +|.+..|+..+
T Consensus       496 ~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~  568 (781)
T 3v9f_A          496 FVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARN  568 (781)
T ss_dssp             CEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTT
T ss_pred             eeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCC
Confidence            788898888887665443345 7778887765433 321    245689999999998777655 77657777654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.46  E-value=3.7e-08  Score=113.13  Aligned_cols=474  Identities=11%  Similarity=0.049  Sum_probs=272.9

Q ss_pred             eecCCCcEEEEECCCCEEEEEEEc-------CCCcEEEEEEee--CCCccEEEEEeCCCcEEEEECCCCeeEEEec----
Q 004214            5 LEGADRKVLVWDVDGGFCTHYFKG-------HKGVVSSILFHP--DTDKSLLFSGSDDATVRVWDLLAKKCVATLD----   71 (768)
Q Consensus         5 tg~~dg~i~vwd~~~~~~~~~l~g-------h~~~V~~l~~sp--d~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~----   71 (768)
                      .|+.++-+..||..++........       ....|.++...+  +|.   |..++.++-|..+|..+++......    
T Consensus        82 igt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~  158 (781)
T 3v9f_A           82 IATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVP  158 (781)
T ss_dssp             EEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCT
T ss_pred             EEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCccc
Confidence            355565799999988875432111       123688888877  654   4456644558999987776543321    


Q ss_pred             -CccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeec--------ceeEeeEEecCCCCCccccccccchhhh
Q 004214           72 -KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT--------YEMVEAVCAIPPGSAFDSFLSSYNQQTI  142 (768)
Q Consensus        72 -~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~~~~~  142 (768)
                       .....|.++...++|... .++.++-|..||..+++.......        ...+.++...+.+               
T Consensus       159 ~l~~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g---------------  222 (781)
T 3v9f_A          159 ALPSEQTWTATEAEDGKLY-IGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNG---------------  222 (781)
T ss_dssp             TCSCCCEEEEEEEETTEEE-EEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTC---------------
T ss_pred             CCCccceEEEEECCCCCEE-EEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCC---------------
Confidence             123458888887777544 455554688999887654322110        1124444443333               


Q ss_pred             hcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccC
Q 004214          143 KKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV  222 (768)
Q Consensus       143 ~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~  222 (768)
                               .+..++.. .+.+|+..++...........   ........+..+.. .....+.+++..+.+..++....
T Consensus       223 ---------~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~---~~~l~~~~i~~i~~-d~~g~lWigt~~~Gl~~~~~~~~  288 (781)
T 3v9f_A          223 ---------NIWIGTSK-GLALFNANTETFTNFHNNPGN---IHGALSSYIFSIKQ-LKDNKLWIATELNGIMILDLQQN  288 (781)
T ss_dssp             ---------CEEEEETT-EEEEEETTTTEEEC--------------CCCCEEEEEE-CTTSEEEEEESSSCEEEEETTCC
T ss_pred             ---------CEEEEeCC-cHheECCCCCcEEEEEcCCCc---cccccCceEEEEEE-CCCCCEEEEeCCCCeEEECCCCC
Confidence                     23444444 588888877644322111000   00011123333333 33445666776577777776543


Q ss_pred             cccceee---EE--E--eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee---------CCccceE
Q 004214          223 PEKKMEL---IL--S--KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA---------GHSEIVL  286 (768)
Q Consensus       223 ~~~~~~~---~~--~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~---------~~~~~v~  286 (768)
                      .......   ..  .  .........|.++...  ....+.+|+.++-|..++..+........         .....|.
T Consensus       289 ~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D--~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~  366 (781)
T 3v9f_A          289 QFLLPEQIRFEFIREGDNNYSLSNASARYIFQD--SFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS  366 (781)
T ss_dssp             ---------CEEECBCSSTTSBSSSCEEEEEEC--SSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred             eeeeeeccccccccCCCCCCCCCCCeEEEEEEe--CCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence            2111100   00  0  0011123456666654  34467788877889999987655432211         1235577


Q ss_pred             EEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee---ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCC
Q 004214          287 CLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG---TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD  363 (768)
Q Consensus       287 ~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  363 (768)
                      ++.  ...+ +. |..|+.++-|..|+..++......   ......|.++...+++.  |..|+.++.+..++.....  
T Consensus       367 ~i~--~d~~-g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~--  438 (781)
T 3v9f_A          367 SVC--DDGQ-GK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN--LWFGTYLGNISYYNTRLKK--  438 (781)
T ss_dssp             EEE--ECTT-SC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC--EEEEETTEEEEEECSSSCE--
T ss_pred             EEE--EcCC-CC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC--EEEEeccCCEEEEcCCCCc--
Confidence            774  3333 44 677787777999998765443221   12346788998887765  6667777778888865321  


Q ss_pred             CccccccceeeEe--eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEecc-----CCCeEEEEEccCCCE
Q 004214          364 AEQPMNLKAKAVV--AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH-----KRGIWSVEFSPVDQV  436 (768)
Q Consensus       364 ~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~v~~v~~s~~~~~  436 (768)
                              .....  ......|.++...++|.+.+ |+. +-+..||..+++........     ...|.++...++|++
T Consensus       439 --------~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l  508 (781)
T 3v9f_A          439 --------FQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRF  508 (781)
T ss_dssp             --------EEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCE
T ss_pred             --------EEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCE
Confidence                    11000  11345788999888886544 555 55889998876554333222     357899999998886


Q ss_pred             EEEeeCCCcEEEEeCCCCceeEEeec----CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc----CCCc
Q 004214          437 VITASGDKTIKIWSISDGSCLKTFEG----HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK----HEDK  508 (768)
Q Consensus       437 l~t~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~  508 (768)
                      .+.....| +..||..+++.. .+..    ....|.++...++|+..++.. +|.|..||..+++.. .+..    ....
T Consensus       509 Wigt~~~G-l~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~-~~~~~~gl~~~~  584 (781)
T 3v9f_A          509 WIGTFGGG-VGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQ-VFQRKEGLPNTH  584 (781)
T ss_dssp             EEEESSSC-EEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCE-EECGGGTCSCCC
T ss_pred             EEEEcCCC-EEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEE-EccccCCCCCce
Confidence            66544344 778898665433 3321    235688888888887655544 776588998776533 2321    2245


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          509 IWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       509 v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      |.++...++|...+++ ..| |..++..+
T Consensus       585 i~~i~~d~~g~lW~~t-~~G-l~~~~~~~  611 (781)
T 3v9f_A          585 IRAISEDKNGNIWAST-NTG-ISCYITSK  611 (781)
T ss_dssp             CCEEEECSSSCEEEEC-SSC-EEEEETTT
T ss_pred             EEEEEECCCCCEEEEc-CCc-eEEEECCC
Confidence            7889999999877665 455 66677653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.46  E-value=2.1e-12  Score=131.61  Aligned_cols=182  Identities=12%  Similarity=0.116  Sum_probs=140.3

Q ss_pred             cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCc-cccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 004214          329 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE-QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW  407 (768)
Q Consensus       329 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~  407 (768)
                      ++..+++++..+ ++++|+.++ +.+|++........ ........ ....+.. |+.++|  ++++|+++ .++.|++|
T Consensus        39 ~~nlLais~~~g-ll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred             cccEEEEcCCCC-EEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence            688999999865 788888875 55698753320000 00001111 2234566 999999  89999998 88999999


Q ss_pred             eCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCc
Q 004214          408 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL  487 (768)
Q Consensus       408 d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  487 (768)
                      |+.+.........|..++.++.+.+..  +++++.||.|.+||+.++....    +...|++++|+|+|  ++.|..||+
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~  183 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRS  183 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSC
T ss_pred             EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCc
Confidence            999887777777888889888877643  8888999999999999887653    45689999999999  788999999


Q ss_pred             EEEEECCCCeE--EEEe------c---cCCCcEEEEEEcCCCCEEEEEe
Q 004214          488 VKLWTVRTGEC--IATY------D---KHEDKIWALAVGKKTEMFATGG  525 (768)
Q Consensus       488 i~iwd~~~~~~--~~~~------~---~~~~~v~~l~~s~~~~~l~s~~  525 (768)
                      +++|+...+++  ..++      .   +|...|.++.|.+++.++++=+
T Consensus       184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            99999988886  6666      2   3788999999999999988733

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.46  E-value=1.6e-11  Score=140.25  Aligned_cols=242  Identities=13%  Similarity=0.055  Sum_probs=161.3

Q ss_pred             cceEEEeeeeecCCCEEEEEEeCCC----eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCe-------
Q 004214          283 EIVLCLDTCALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT-------  351 (768)
Q Consensus       283 ~~v~~l~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~-------  351 (768)
                      ..+..+.  ++|+++.++++.+.+|    .|++||+.+++.+... .+...+..++|+|+ +. |+.++.++.       
T Consensus       163 ~~~~~~~--~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~-l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          163 TALDAWA--ASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DA-LLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             EEEEEEE--ECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SE-EEEEECCCC-------
T ss_pred             EEEEeEE--ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CE-EEEEEecCcccccccc
Confidence            3556665  7788887444444434    5999999999876542 12222357899999 64 555555443       


Q ss_pred             -------EEEEeCCCCCCCCccccccceeeEee--ccCCCeEEEEEccCCCEEEEEeCCC-----cEEEEeCCCC--ceE
Q 004214          352 -------IKVWSFDGLSDDAEQPMNLKAKAVVA--AHGKDINSLAVAPNDSLVCTGSQDR-----TACVWRLPDL--VSV  415 (768)
Q Consensus       352 -------i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~--~~~  415 (768)
                             |.+|++.....        .......  .+...+.++.|+|||++|+..+.++     .|++||+.++  +..
T Consensus       238 ~~~~~~~v~~~~lgt~~~--------~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~  309 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQS--------ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPV  309 (741)
T ss_dssp             -CCCCCEEEEEETTSCGG--------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCC
T ss_pred             cCCCCCEEEEEECCCCch--------hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCccc
Confidence                   88888864321        1111222  2233578999999999988877544     7999999876  314


Q ss_pred             EEEeccCCCeEEEEEccCCCEEEEeeC----CCcEEEEeCCCC--ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEE
Q 004214          416 VTFRGHKRGIWSVEFSPVDQVVITASG----DKTIKIWSISDG--SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVK  489 (768)
Q Consensus       416 ~~~~~~~~~v~~v~~s~~~~~l~t~~~----d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  489 (768)
                      ..+..+...+.... +|+|+.|+..+.    ++.|.+||+.++  .....+..+...+..+.|+ ++.++++...||..+
T Consensus       310 ~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~  387 (741)
T 1yr2_A          310 TALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQ  387 (741)
T ss_dssp             EEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEE
T ss_pred             EEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence            55655655555553 488988887765    345999999875  3344444555566677777 566778888899877


Q ss_pred             EEECC-CCeEEEEecc-CCCcEEEEEEcCCCCEEEEE----eCCCcEEEEEcCCHH
Q 004214          490 LWTVR-TGECIATYDK-HEDKIWALAVGKKTEMFATG----GSDALVNLWHDSTAA  539 (768)
Q Consensus       490 iwd~~-~~~~~~~~~~-~~~~v~~l~~s~~~~~l~s~----~~dg~v~vw~~~~~~  539 (768)
                      ||.+. ++.....+.. +.+.+..+.++|++..|+..    ...+.|++|++.+++
T Consensus       388 l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          388 VLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            77554 4666666654 36778899999998866632    245789999987754

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.46  E-value=1.4e-10  Score=116.38  Aligned_cols=221  Identities=14%  Similarity=0.106  Sum_probs=153.2

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccc
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK  371 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  371 (768)
                      +.++++.++++...++.|..||..++.... + .....+.++++++++. ++++ . ++.|.+||...+.        ..
T Consensus        20 w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~~g~--------~~   86 (297)
T 3g4e_A           20 WEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-V-TMDAPVSSVALRQSGG-YVAT-I-GTKFCALNWKEQS--------AV   86 (297)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTCCEEE-E-ECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETTTTE--------EE
T ss_pred             EECCCCEEEEEECCCCEEEEEECCCCcEEE-E-eCCCceEEEEECCCCC-EEEE-E-CCeEEEEECCCCc--------EE
Confidence            667677778888889999999998876532 2 2456799999999987 4444 4 5679999986431        11


Q ss_pred             eeeEee--ccCCCeEEEEEccCCCEEEEEeCC---------CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEE-E
Q 004214          372 AKAVVA--AHGKDINSLAVAPNDSLVCTGSQD---------RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI-T  439 (768)
Q Consensus       372 ~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-t  439 (768)
                      ......  .....++.++++|+|+++++....         ..-.+|.+........+..+......++|+|+++.|+ +
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~  166 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYI  166 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEE
T ss_pred             EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEe
Confidence            111110  012347889999999977654321         2334555443222233333445568899999998665 4


Q ss_pred             eeCCCcEEEEeC--CCCce-----eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEE
Q 004214          440 ASGDKTIKIWSI--SDGSC-----LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL  512 (768)
Q Consensus       440 ~~~d~~i~iwd~--~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l  512 (768)
                      .+.++.|.+|++  .++..     ...+..+......+++.++|++.++....+.|.+||..+|+.+..+..+...++++
T Consensus       167 ~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~  246 (297)
T 3g4e_A          167 DSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSC  246 (297)
T ss_dssp             EGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEE
T ss_pred             cCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEE
Confidence            555788999987  45543     22333344677889999999888887778899999999999999998777889999


Q ss_pred             EEc-CCCCEEEEEe
Q 004214          513 AVG-KKTEMFATGG  525 (768)
Q Consensus       513 ~~s-~~~~~l~s~~  525 (768)
                      +|. |+++.|..++
T Consensus       247 ~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          247 CFGGKNYSEMYVTC  260 (297)
T ss_dssp             EEESGGGCEEEEEE
T ss_pred             EEeCCCCCEEEEEc
Confidence            998 8887765544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.43  E-value=1.1e-09  Score=109.95  Aligned_cols=172  Identities=5%  Similarity=-0.031  Sum_probs=112.8

Q ss_pred             CCeEEEEeCCCceEEEe-eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeE
Q 004214          306 DNSVRLWDSESRCCVGV-GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN  384 (768)
Q Consensus       306 dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~  384 (768)
                      ++.|..||.. ++.... .......+..+++.+++. ++++...++.|..|+.. +.        . .......+...+.
T Consensus       124 ~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~-g~--------~-~~~~~~~~~~~~~  191 (300)
T 2qc5_A          124 GDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITNT-GK--------L-EEYPLPTNAAAPV  191 (300)
T ss_dssp             TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTT-CC--------E-EEEECSSTTCCEE
T ss_pred             CCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECCC-Cc--------E-EEeeCCCCCCCcc
Confidence            4555555554 332211 222345678899999876 66666667889999873 21        0 0111122345688


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCCceEEE-EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeE-Eeec
Q 004214          385 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK-TFEG  462 (768)
Q Consensus       385 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~-~~~~  462 (768)
                      +++++++|.+.++....+.|.+|+. ++..... +..+...+.+++++++|++.++...++.|..||. ++.... .+..
T Consensus       192 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~  269 (300)
T 2qc5_A          192 GITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQT  269 (300)
T ss_dssp             EEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCS
T ss_pred             eEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCc
Confidence            9999999987777666778999998 4443332 3334567899999999997777767789999998 454332 2333


Q ss_pred             CCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214          463 HTSSVLRASFLTRGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       463 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  493 (768)
                      ....+.++++.++|+..++.. . .|..+|.
T Consensus       270 ~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          270 ENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             TTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             cCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            445678899999998666655 4 6666664

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.43  E-value=1.1e-10  Score=118.32  Aligned_cols=238  Identities=10%  Similarity=0.090  Sum_probs=162.1

Q ss_pred             CceeEEEEecCCCCEEEE-------EeCCCcEEEEECCCceeeeeee----CCccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214          240 EEILDLKFLGEEEQYLAV-------ATNIEQVQVYDLSSMSCSYVLA----GHSEIVLCLDTCALSSGKILIVTGSKDNS  308 (768)
Q Consensus       240 ~~i~~~~~~~~~~~~l~~-------~~~~~~i~i~d~~~~~~~~~~~----~~~~~v~~l~~~~~~~~~~~l~~~~~dg~  308 (768)
                      ....+++|. +++.++++       ++.++.|.+||..+++......    ++...+.++.  +.++++. +..++..+.
T Consensus        18 ~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~--~~~~~g~-l~v~~~~~~   93 (314)
T 1pjx_A           18 PGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQ--CDRDANQ-LFVADMRLG   93 (314)
T ss_dssp             TTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEE--ECSSSSE-EEEEETTTE
T ss_pred             CCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEE--EecCCCc-EEEEECCCC
Confidence            345678887 46666666       4677899999988777543322    2445567775  5555255 444444558


Q ss_pred             EEEEeCCCceEEEe-eec----ccCcEEEEEEecCCCcEEEEEeCC---------------CeEEEEeCCCCCCCCcccc
Q 004214          309 VRLWDSESRCCVGV-GTG----HMGAVGAVAFSKKLQNFLVSGSSD---------------HTIKVWSFDGLSDDAEQPM  368 (768)
Q Consensus       309 i~iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~l~s~~~d---------------g~i~iwd~~~~~~~~~~~~  368 (768)
                      |.+||.. ++.... ...    +...+.++++++++. ++++...+               +.|..|+.. +        
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g--------  162 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G--------  162 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S--------
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-C--------
Confidence            9999998 665443 221    123578999999976 55555544               456666543 1        


Q ss_pred             ccceeeEeeccCCCeEEEEEc----cCCCEEEEE-eCCCcEEEEeCC-CCc-----eEEEEeccC-CCeEEEEEccCCCE
Q 004214          369 NLKAKAVVAAHGKDINSLAVA----PNDSLVCTG-SQDRTACVWRLP-DLV-----SVVTFRGHK-RGIWSVEFSPVDQV  436 (768)
Q Consensus       369 ~~~~~~~~~~~~~~i~~~~~s----~~~~~l~~~-~~dg~i~i~d~~-~~~-----~~~~~~~~~-~~v~~v~~s~~~~~  436 (768)
                      .  . .....+......++++    |+++.++++ ..++.|.+|+.. ++.     ....+.++. ..+..++++++|++
T Consensus       163 ~--~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l  239 (314)
T 1pjx_A          163 Q--M-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL  239 (314)
T ss_dssp             C--E-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE
T ss_pred             C--E-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCE
Confidence            1  1 1112233456889999    999765555 567899999976 443     222333333 56788999999999


Q ss_pred             EEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEE-eCCCcEEEEECCC
Q 004214          437 VITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSC-GADGLVKLWTVRT  495 (768)
Q Consensus       437 l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~  495 (768)
                      +++...++.|.+||..+++.+..+..+...+.+++|+++|++|+.+ ..++.|..|++..
T Consensus       240 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          240 LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            8888788999999998788888887777889999999999966544 4567899998864

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.42  E-value=1.6e-10  Score=119.41  Aligned_cols=279  Identities=10%  Similarity=-0.005  Sum_probs=182.0

Q ss_pred             CcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEE--------eCCCcEEEEECCCCeeEEEecCc-------c
Q 004214           10 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG--------SDDATVRVWDLLAKKCVATLDKH-------F   74 (768)
Q Consensus        10 g~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg--------~~dg~I~iWd~~~~~~~~~l~~h-------~   74 (768)
                      +.|.++|..+++.+..+.--..+  .++++|||++.+++..        ..++.|.++|..+++.+.++.-.       .
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g  176 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG  176 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence            79999999999999998865556  8999999998555442        24678999999999998887521       2


Q ss_pred             ceeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceE
Q 004214           75 SRVTSMAITSDGSTLISAGR--DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH  152 (768)
Q Consensus        75 ~~V~~l~fs~d~~~L~s~~~--dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (768)
                      .....++|+|||++|+.+..  ++.|.+.|+.+++.+.+++....   ....|.+.                      ..
T Consensus       177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~----------------------~~  231 (426)
T 3c75_H          177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASP----------------------TV  231 (426)
T ss_dssp             CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEET----------------------TE
T ss_pred             CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCC----------------------cE
Confidence            34567899999999998874  57899999999999988876432   12222221                      25


Q ss_pred             EEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEE
Q 004214          153 FITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS  232 (768)
Q Consensus       153 ~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~  232 (768)
                      +++.+.+|.+.+.+..++.......    ..+... ....+....+.+++..++..+..+.+.+.+..............
T Consensus       232 ~v~~~~dG~~~~V~~~~~~v~~~~~----~~~~v~-~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~  306 (426)
T 3c75_H          232 FYMNCRDGSLARVDFADGETKVTNT----EVFHTE-DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEA  306 (426)
T ss_dssp             EEEEETTSSEEEEECCTTCCEEEEC----CCCSCT-TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEES
T ss_pred             EEEEcCCCCEEEEECCCCcEEEEee----eeeccC-CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeee
Confidence            6677788888888886554432111    000000 01112234567788888777778888888875432110000000


Q ss_pred             ee----ecc-cCCceeEEEEecCCCCEEEEEeC---------CCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCE
Q 004214          233 KR----LVG-YNEEILDLKFLGEEEQYLAVATN---------IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI  298 (768)
Q Consensus       233 ~~----~~~-~~~~i~~~~~~~~~~~~l~~~~~---------~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~  298 (768)
                      ..    ..+ .......++++++....+++..+         ++.|.++|..+.+.+..+.... ...++.  +.++++.
T Consensus       307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia--~spDg~~  383 (426)
T 3c75_H          307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSIN--VSQDAEP  383 (426)
T ss_dssp             SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEE--ECCSSSC
T ss_pred             ccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEE--EccCCCE
Confidence            00    000 01111235666544444443321         3579999999999998886433 355555  7788872


Q ss_pred             EEEEEe-CCCeEEEEeCCCceEEEee
Q 004214          299 LIVTGS-KDNSVRLWDSESRCCVGVG  323 (768)
Q Consensus       299 ~l~~~~-~dg~i~iwd~~~~~~~~~~  323 (768)
                      ++++.. .++.|.++|..+++.+..+
T Consensus       384 ~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          384 LLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            366665 6999999999999998876

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.40  E-value=3.3e-10  Score=118.65  Aligned_cols=236  Identities=10%  Similarity=0.061  Sum_probs=161.2

Q ss_pred             ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCC--eEEEEeCCCCC
Q 004214          284 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLS  361 (768)
Q Consensus       284 ~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~  361 (768)
                      ....++  +.+++ .++++...++.|++||..++...........+ . ++|++++. .++++..++  .|..|+.....
T Consensus       132 ~P~~la--~d~~g-~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~-~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          132 YMWGIA--AVGNN-TVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQ-RVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CEEEEE--ECSTT-EEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSS-EEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CceEEE--EeCCC-CEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCC-cEEEEecCCCceEEEEEcCCCc
Confidence            455664  54554 45777777899999999988777665543333 3 89999977 567776655  78888865321


Q ss_pred             CCCccccccceeeEeec-cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEE----EeccCCCe--EEEEEccC-
Q 004214          362 DDAEQPMNLKAKAVVAA-HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT----FRGHKRGI--WSVEFSPV-  433 (768)
Q Consensus       362 ~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v--~~v~~s~~-  433 (768)
                      .       ......... ....+.+++++|++..|+++..++.|+.||..++.....    ..++...-  ..++|+|+ 
T Consensus       206 ~-------~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~  278 (409)
T 3hrp_A          206 A-------PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD  278 (409)
T ss_dssp             C-------EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTT
T ss_pred             e-------eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCC
Confidence            1       001101112 446678899999555555577788999999987754332    22222222  39999995 


Q ss_pred             CCEEEEeeCCCcEEEEeCCCCceeEEeecCC---------------CcEEEEEEEeCCCEEEEEe-CCCcEEEEECCCCe
Q 004214          434 DQVVITASGDKTIKIWSISDGSCLKTFEGHT---------------SSVLRASFLTRGAQIVSCG-ADGLVKLWTVRTGE  497 (768)
Q Consensus       434 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~---------------~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~  497 (768)
                      +.++++-..++.|+.|+... . +..+.++.               .....++++++|+++++-. .++.|+.|++.++.
T Consensus       279 g~lyv~d~~~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          279 SNFYMSDQNLSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             TEEEEEETTTTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred             CEEEEEeCCCCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence            66666667788999999753 3 33444332               4578999999999777777 78899999988887


Q ss_pred             EEEEeccC---------------CCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214          498 CIATYDKH---------------EDKIWALAVGKKTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       498 ~~~~~~~~---------------~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~  535 (768)
                      .. ++.++               -.....++++++|.++++-..++.|+.+.+
T Consensus       357 v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          357 VS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            43 33333               245889999999988888888888887764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.38  E-value=1.4e-09  Score=113.21  Aligned_cols=214  Identities=10%  Similarity=0.040  Sum_probs=133.2

Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeeCCccce-----EEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccC
Q 004214          254 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV-----LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMG  328 (768)
Q Consensus       254 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  328 (768)
                      .+++++.++.+..+|..+++............     ...   . ..++. ++.++.+|.+..+|..+++.+........
T Consensus       145 ~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~---~-~~~~~-v~~g~~~g~l~~~d~~tG~~~w~~~~~~~  219 (376)
T 3q7m_A          145 LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAP---T-TAFGA-AVVGGDNGRVSAVLMEQGQMIWQQRISQA  219 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCC---E-EETTE-EEECCTTTEEEEEETTTCCEEEEEECCC-
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCc---E-EECCE-EEEEcCCCEEEEEECCCCcEEEEEecccC
Confidence            45555556666666766666655544322111     011   1 11344 77788899999999999988766543211


Q ss_pred             c----------E-EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEE
Q 004214          329 A----------V-GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT  397 (768)
Q Consensus       329 ~----------v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  397 (768)
                      .          + ...... + . .++.++.++.+..+|...+..          .....  ......+..  ++..+++
T Consensus       220 ~~~~~~~~~~~~~~~p~~~-~-~-~v~~~~~~g~l~~~d~~tG~~----------~w~~~--~~~~~~~~~--~~~~l~~  282 (376)
T 3q7m_A          220 TGSTEIDRLSDVDTTPVVV-N-G-VVFALAYNGNLTALDLRSGQI----------MWKRE--LGSVNDFIV--DGNRIYL  282 (376)
T ss_dssp             ----------CCCCCCEEE-T-T-EEEEECTTSCEEEEETTTCCE----------EEEEC--CCCEEEEEE--ETTEEEE
T ss_pred             CCCcccccccccCCCcEEE-C-C-EEEEEecCcEEEEEECCCCcE----------Eeecc--CCCCCCceE--ECCEEEE
Confidence            0          0 011111 2 2 577888899999999875421          11111  122333333  4667888


Q ss_pred             EeCCCcEEEEeCCCCceEEEEec-cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCC
Q 004214          398 GSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG  476 (768)
Q Consensus       398 ~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  476 (768)
                      ++.++.+..+|..+++....... ....+......  +..|++++.+|.|.++|..+|+.+..+......+...... .+
T Consensus       283 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~  359 (376)
T 3q7m_A          283 VDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-AD  359 (376)
T ss_dssp             EETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE-ET
T ss_pred             EcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE-EC
Confidence            88999999999999998877652 22223333332  5678888899999999999999988877533333322222 35


Q ss_pred             CEEEEEeCCCcEEEEE
Q 004214          477 AQIVSCGADGLVKLWT  492 (768)
Q Consensus       477 ~~l~s~~~dg~i~iwd  492 (768)
                      ..|+.++.+|.|+.|+
T Consensus       360 ~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          360 GKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TEEEEEBTTSCEEEEE
T ss_pred             CEEEEEeCCCEEEEEe
Confidence            5788899999999987

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.37  E-value=1e-09  Score=114.27  Aligned_cols=256  Identities=9%  Similarity=0.040  Sum_probs=164.8

Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcE--
Q 004214          253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV--  330 (768)
Q Consensus       253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v--  330 (768)
                      ..+++++.++.|..+|..+++...............   . ..++. ++.++.++.|..+|..+++.+..........  
T Consensus       104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p---~-~~~~~-v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~  178 (376)
T 3q7m_A          104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRP---V-VSDGL-VLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL  178 (376)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCC---E-EETTE-EEEECTTSEEEEEETTTCCEEEEEECCC-----
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCC---E-EECCE-EEEEcCCCeEEEEECCCCcEEEEEeCCCCceee
Confidence            456667777888888888887766554433221111   1 12344 7788899999999999998887765432211  


Q ss_pred             ---EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccC-------CCeEEEEEcc--CCCEEEEE
Q 004214          331 ---GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG-------KDINSLAVAP--NDSLVCTG  398 (768)
Q Consensus       331 ---~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~s~--~~~~l~~~  398 (768)
                         ...... + . .++.++.++.+..+|...+..          ........       ..+..+...|  .+..++++
T Consensus       179 ~~~~~~~~~-~-~-~v~~g~~~g~l~~~d~~tG~~----------~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~  245 (376)
T 3q7m_A          179 RGESAPTTA-F-G-AAVVGGDNGRVSAVLMEQGQM----------IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFAL  245 (376)
T ss_dssp             CCCCCCEEE-T-T-EEEECCTTTEEEEEETTTCCE----------EEEEECCC-----------CCCCCCEEETTEEEEE
T ss_pred             cCCCCcEEE-C-C-EEEEEcCCCEEEEEECCCCcE----------EEEEecccCCCCcccccccccCCCcEEECCEEEEE
Confidence               122222 2 2 577888899999999875532          11111000       0000011111  34677888


Q ss_pred             eCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC-CCcEEEEEEEeCCC
Q 004214          399 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH-TSSVLRASFLTRGA  477 (768)
Q Consensus       399 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~  477 (768)
                      +.++.+..+|..+++.+.....  .....+...  +..++.++.++.|..+|..+|+.+...... ...+.....  .+.
T Consensus       246 ~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~  319 (376)
T 3q7m_A          246 AYNGNLTALDLRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNG  319 (376)
T ss_dssp             CTTSCEEEEETTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETT
T ss_pred             ecCcEEEEEECCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECC
Confidence            8899999999999988776542  234444443  667888888999999999999988776522 222222222  356


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEE-EEEcCCCCEEEEEeCCCcEEEEE
Q 004214          478 QIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA-LAVGKKTEMFATGGSDALVNLWH  534 (768)
Q Consensus       478 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~s~~~~~l~s~~~dg~v~vw~  534 (768)
                      .|+.++.+|.|.++|..+|+.+..+......+.+ ...  .+..|+.++.+|.|..|+
T Consensus       320 ~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          320 NLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence            8888999999999999999998887653444332 222  356788899999999886

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.36  E-value=1.8e-10  Score=116.05  Aligned_cols=231  Identities=13%  Similarity=0.057  Sum_probs=156.7

Q ss_pred             ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCC
Q 004214          282 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS  361 (768)
Q Consensus       282 ~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  361 (768)
                      .....+..  +.++++.+++++..++.|..|+.. +. ...+..+...+..++++++|. ++++...++.|..|+.. +.
T Consensus        44 ~~~~egp~--~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g~  117 (305)
T 3dr2_A           44 ATWSEGPA--WWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSDAD-GQ  117 (305)
T ss_dssp             CSSEEEEE--EEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SC
T ss_pred             CcCccCCe--EeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEECCC-CC
Confidence            33444554  677888778888889999999984 44 344555667789999999976 55555566889999875 21


Q ss_pred             CCCccccccceee-Eee-ccCCCeEEEEEccCCCEEEE----EeC-------------CCcEEEEeCCCCceEEEEeccC
Q 004214          362 DDAEQPMNLKAKA-VVA-AHGKDINSLAVAPNDSLVCT----GSQ-------------DRTACVWRLPDLVSVVTFRGHK  422 (768)
Q Consensus       362 ~~~~~~~~~~~~~-~~~-~~~~~i~~~~~s~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~  422 (768)
                              ..... ... .....++.++++|+|+++++    |..             .+.|..||..+++.....  ..
T Consensus       118 --------~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~  187 (305)
T 3dr2_A          118 --------AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL  187 (305)
T ss_dssp             --------EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred             --------EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence                    00000 000 11245678999999998886    332             246778887666654433  34


Q ss_pred             CCeEEEEEccCCCEEEEeeCC------CcEEEEeCCCCcee--EEe-ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214          423 RGIWSVEFSPVDQVVITASGD------KTIKIWSISDGSCL--KTF-EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       423 ~~v~~v~~s~~~~~l~t~~~d------~~i~iwd~~~~~~~--~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  493 (768)
                      .....++|+|+++.|+.+...      +.|.+|++..+...  ..+ .........+++.++|++.+ ++.+| |.+|+.
T Consensus       188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~g-v~~~~~  265 (305)
T 3dr2_A          188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGTG-VCVFDS  265 (305)
T ss_dssp             SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSSE-EEEECT
T ss_pred             CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCCc-EEEECC
Confidence            566889999999988777665      68999998765411  111 11233455688999998544 44554 999997


Q ss_pred             CCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 004214          494 RTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL  532 (768)
Q Consensus       494 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~v  532 (768)
                       +++.+..+..+. .+.+++|+|+++.|..++.++..++
T Consensus       266 -~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          266 -DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             -TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             -CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence             678888877555 5889999999998888887754443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.36  E-value=3.7e-11  Score=122.84  Aligned_cols=219  Identities=12%  Similarity=0.026  Sum_probs=149.9

Q ss_pred             CCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE
Q 004214          296 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV  375 (768)
Q Consensus       296 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  375 (768)
                      ++. +..++.++.+..+|.. ++.......+...+.++...+++.  +..++.++.|..+|.. +.          ....
T Consensus       107 ~~~-l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~----------~~~~  171 (330)
T 3hxj_A          107 EDI-LYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GT----------EKWR  171 (330)
T ss_dssp             TTE-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SC----------EEEE
T ss_pred             CCE-EEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CC----------EeEE
Confidence            344 6677778888888887 666655555555556666666654  6677888889999876 31          1112


Q ss_pred             eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 004214          376 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS  455 (768)
Q Consensus       376 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~  455 (768)
                      .......+.++.+.+++.+.+ ++  +.+..+| .+++....+......+.++...++|.+. .++.++.|..+|. ++.
T Consensus       172 ~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~-~g~  245 (330)
T 3hxj_A          172 FKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIY-VTSLDGHLYAINP-DGT  245 (330)
T ss_dssp             EECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEE-EEETTTEEEEECT-TSC
T ss_pred             EecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEE-EEcCCCeEEEECC-CCC
Confidence            222344566777777877554 44  8899999 7777777776666778889998887654 4556788888884 677


Q ss_pred             eeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214          456 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       456 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~  535 (768)
                      .+..+......+..+.+.+++ .|..++.+|.|..+|. +++.+..+......+.++...++|. |..++.+|.+++...
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~  322 (330)
T 3hxj_A          246 EKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFN  322 (330)
T ss_dssp             EEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC
T ss_pred             EeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEec
Confidence            776666444444445554455 5667778888999996 7887777765566677788878876 455888999998876


Q ss_pred             CCH
Q 004214          536 STA  538 (768)
Q Consensus       536 ~~~  538 (768)
                      ...
T Consensus       323 ~~~  325 (330)
T 3hxj_A          323 LEH  325 (330)
T ss_dssp             ---
T ss_pred             ccc
Confidence            543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.36  E-value=1.6e-09  Score=109.99  Aligned_cols=218  Identities=11%  Similarity=-0.029  Sum_probs=149.5

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccc
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK  371 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  371 (768)
                      +.++++.++++...++.|..||..+++... +. ....+.++++++++. +++ ++.+ .|.+||...+..        .
T Consensus        56 ~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~-l~v-~~~~-gl~~~d~~~g~~--------~  122 (326)
T 2ghs_A           56 FDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSK-QLI-ASDD-GLFLRDTATGVL--------T  122 (326)
T ss_dssp             EETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTE-EEE-EETT-EEEEEETTTCCE--------E
T ss_pred             EeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCe-EEE-EECC-CEEEEECCCCcE--------E
Confidence            667667778888888999999998876543 22 346799999999976 444 4444 488999764421        0


Q ss_pred             eeeEee--ccCCCeEEEEEccCCCEEEEEeC------CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEe-eC
Q 004214          372 AKAVVA--AHGKDINSLAVAPNDSLVCTGSQ------DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA-SG  442 (768)
Q Consensus       372 ~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~-~~  442 (768)
                      ......  .....+++++++|+|+++++...      .+.|..++  +++.. .+..+......++|+|+++.++.+ +.
T Consensus       123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~  199 (326)
T 2ghs_A          123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTK  199 (326)
T ss_dssp             EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred             EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECC
Confidence            000000  11235789999999997765542      24566666  44433 333334457789999999876554 45


Q ss_pred             CCcEEEEeCC--CC-ce-----eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEE
Q 004214          443 DKTIKIWSIS--DG-SC-----LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV  514 (768)
Q Consensus       443 d~~i~iwd~~--~~-~~-----~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~  514 (768)
                      ++.|.+||+.  ++ ..     ...+......+..+++.++|++.++...++.|.+|+. +++.+..+..+...+++++|
T Consensus       200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af  278 (326)
T 2ghs_A          200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAF  278 (326)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEE
T ss_pred             CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEE
Confidence            7899999986  56 32     2233334456788999999988877767788999998 68888888777778999999


Q ss_pred             c-CCCCEEEEEeC
Q 004214          515 G-KKTEMFATGGS  526 (768)
Q Consensus       515 s-~~~~~l~s~~~  526 (768)
                      + |++..|+.++.
T Consensus       279 ~g~d~~~L~vt~~  291 (326)
T 2ghs_A          279 IGPDASRLLVTSA  291 (326)
T ss_dssp             ESTTSCEEEEEEB
T ss_pred             ecCCCCEEEEEec
Confidence            8 88877655443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.36  E-value=1.3e-09  Score=109.32  Aligned_cols=225  Identities=9%  Similarity=-0.016  Sum_probs=155.2

Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE
Q 004214          242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG  321 (768)
Q Consensus       242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  321 (768)
                      .-...|.+.++.++++....+.|..||..++... .+. ....+.++.  +.++++. ++ +. ++.|.+||..+++...
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~--~~~dG~l-~v-~~-~~~l~~~d~~~g~~~~   87 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVA--LRQSGGY-VA-TI-GTKFCALNWKEQSAVV   87 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEE--EBTTSSE-EE-EE-TTEEEEEETTTTEEEE
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEE--ECCCCCE-EE-EE-CCeEEEEECCCCcEEE
Confidence            3466777767777888888899999999887653 222 345677776  6666663 44 34 5689999998887544


Q ss_pred             eeec----ccCcEEEEEEecCCCcEEEEEeC---------CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEE
Q 004214          322 VGTG----HMGAVGAVAFSKKLQNFLVSGSS---------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV  388 (768)
Q Consensus       322 ~~~~----~~~~v~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  388 (768)
                      ....    ....+..++++|+|. ++++...         ...-.+|.+....          .......+....+.++|
T Consensus        88 ~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g----------~~~~~~~~~~~pngi~~  156 (297)
T 3g4e_A           88 LATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDH----------HVKKYFDQVDISNGLDW  156 (297)
T ss_dssp             EEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTS----------CEEEEEEEESBEEEEEE
T ss_pred             EEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCC----------CEEEEeeccccccceEE
Confidence            3332    123578899999987 4444322         1334566554211          11112223345689999


Q ss_pred             ccCCCEEE-EEeCCCcEEEEeC--CCCce-----EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214          389 APNDSLVC-TGSQDRTACVWRL--PDLVS-----VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF  460 (768)
Q Consensus       389 s~~~~~l~-~~~~dg~i~i~d~--~~~~~-----~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~  460 (768)
                      +|+++.++ +.+.++.|.+|++  .++..     ...+..+......++++++|++.++....+.|..||..+++.+..+
T Consensus       157 spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i  236 (297)
T 3g4e_A          157 SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV  236 (297)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred             cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence            99998665 4456788999987  45543     2222334456789999999998888888889999999999999999


Q ss_pred             ecCCCcEEEEEEE-eCCCEEEEEeC
Q 004214          461 EGHTSSVLRASFL-TRGAQIVSCGA  484 (768)
Q Consensus       461 ~~~~~~v~~~~~s-~~~~~l~s~~~  484 (768)
                      ..+...+++++|. |+++.|+.++.
T Consensus       237 ~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          237 KLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             ECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             ECCCCCceEEEEeCCCCCEEEEEcC
Confidence            8887889999998 88887766554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.35  E-value=6.2e-11  Score=120.62  Aligned_cols=164  Identities=7%  Similarity=-0.054  Sum_probs=98.6

Q ss_pred             cCCCEEEEEEeCCCeEEEEeCCC-----ceEEE----eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC
Q 004214          294 SSGKILIVTGSKDNSVRLWDSES-----RCCVG----VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA  364 (768)
Q Consensus       294 ~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~----~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  364 (768)
                      +.+...+++.+.||.+.+.++.+     ++...    .+.....+.   . .+++..++ ..+. +.+.+.|........
T Consensus       172 p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~-~vs~-~~V~viD~~~~~~~v  245 (368)
T 1mda_H          172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLV-WAVA-SSILQGDIPAAGATM  245 (368)
T ss_dssp             EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEE-ECBS-SCCEEEECCSSCCEE
T ss_pred             cCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEE-EEcC-CEEEEEECCCCcceE
Confidence            33433455666777777778776     43321    111122333   3 56655444 4444 889999986421100


Q ss_pred             cccccccee--eEeeccCCCeEEEEEccCCCEEEEEeC---------CCcEEEEeCCCCceEEEEeccCCCeEEEEEccC
Q 004214          365 EQPMNLKAK--AVVAAHGKDINSLAVAPNDSLVCTGSQ---------DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV  433 (768)
Q Consensus       365 ~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~  433 (768)
                      .........  ............++++|+++.++++..         ++.+.++|+.+++.+..+.... ....++|+|+
T Consensus       246 ~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~D  324 (368)
T 1mda_H          246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQD  324 (368)
T ss_dssp             ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCS
T ss_pred             EEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCC
Confidence            000000000  000001111222689999988887643         2356799999999888876443 6889999999


Q ss_pred             CC-EEEEee-CCCcEEEEeCCCCceeEEeecCC
Q 004214          434 DQ-VVITAS-GDKTIKIWSISDGSCLKTFEGHT  464 (768)
Q Consensus       434 ~~-~l~t~~-~d~~i~iwd~~~~~~~~~~~~~~  464 (768)
                      |+ ++++.. .++.|.++|+.+++.+.++....
T Consensus       325 g~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~  357 (368)
T 1mda_H          325 GASDNYANSAGTEVLDIYDAASDQDQSSVELDK  357 (368)
T ss_dssp             SSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred             CCEEEEEccCCCCeEEEEECCCCcEEEEEECCC
Confidence            97 566666 58999999999999999987543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.33  E-value=1.6e-09  Score=113.42  Aligned_cols=153  Identities=10%  Similarity=0.065  Sum_probs=106.3

Q ss_pred             cceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe----eecccCcE--EEEEEecCCCcEEEEEeCCCeEEEEe
Q 004214          283 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV----GTGHMGAV--GAVAFSKKLQNFLVSGSSDHTIKVWS  356 (768)
Q Consensus       283 ~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v--~~~~~~~~~~~~l~s~~~dg~i~iwd  356 (768)
                      ..+.+++  +.+.++. |+.+..++.|+.||..++.....    ..++...-  ..++|+|++..++++-..++.|+.|+
T Consensus       219 ~~p~~ia--v~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~  295 (409)
T 3hrp_A          219 GKIGAVA--LDETEEW-LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKIT  295 (409)
T ss_dssp             SCCCBCE--ECTTSSE-EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred             CCcEEEE--EeCCCCe-EEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEe
Confidence            3344554  5564666 44467788999999987754332    22222222  38999997666777778889999998


Q ss_pred             CCCCCCCCccccccceeeEeecc---------------CCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceEEEEec
Q 004214          357 FDGLSDDAEQPMNLKAKAVVAAH---------------GKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVVTFRG  420 (768)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~---------------~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~  420 (768)
                      ....            .....++               -.....++++|+|+++++-. .++.|+.|++.++.. ..+.+
T Consensus       296 ~~g~------------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g  362 (409)
T 3hrp_A          296 PDGE------------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAG  362 (409)
T ss_dssp             TTCC------------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEE
T ss_pred             cCCC------------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeC
Confidence            7632            0111111               24578999999999877777 789999999877764 44444


Q ss_pred             c---------------CCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214          421 H---------------KRGIWSVEFSPVDQVVITASGDKTIKIWSI  451 (768)
Q Consensus       421 ~---------------~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~  451 (768)
                      +               -.....++++|++.++++-..++.|+.+++
T Consensus       363 ~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          363 QVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             CTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            4               245789999999988888888888988775

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.33  E-value=9e-10  Score=123.09  Aligned_cols=269  Identities=11%  Similarity=0.035  Sum_probs=181.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCceeeeeeeCC-c----cceEEEeeeeecCCCEEEEEEeC------CCeEEEEeCCCceEE
Q 004214          252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGH-S----EIVLCLDTCALSSGKILIVTGSK------DNSVRLWDSESRCCV  320 (768)
Q Consensus       252 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~----~~v~~l~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~  320 (768)
                      +..+++++.++.+..+|..+++.+..+..+ .    ..+.+.   ....++. ++.++.      +|.|+.||..+++.+
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~---p~v~~~~-v~v~~~~~~~~~~g~v~a~D~~tG~~~  203 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGA---PRVFKGK-VIIGNGGAEYGVRGYITAYDAETGERK  203 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSC---CEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccC---cEEECCE-EEEEecccccCCCCEEEEEECCCCcEE
Confidence            347778888899999999999988777654 1    111111   1112444 444443      799999999999988


Q ss_pred             EeeecccCc--------------------------------EEEEEEecCCCcEEEEEeCCC------------------
Q 004214          321 GVGTGHMGA--------------------------------VGAVAFSKKLQNFLVSGSSDH------------------  350 (768)
Q Consensus       321 ~~~~~~~~~--------------------------------v~~~~~~~~~~~~l~s~~~dg------------------  350 (768)
                      ..+......                                ...++++|++. .++.++.++                  
T Consensus       204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~  282 (677)
T 1kb0_A          204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYL  282 (677)
T ss_dssp             EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred             EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeee
Confidence            766532211                                12467888755 677776654                  


Q ss_pred             -eEEEEeCCCCCCCCccccccceeeEeec--c-------CCCeEEEEEccCC---CEEEEEeCCCcEEEEeCCCCceEEE
Q 004214          351 -TIKVWSFDGLSDDAEQPMNLKAKAVVAA--H-------GKDINSLAVAPND---SLVCTGSQDRTACVWRLPDLVSVVT  417 (768)
Q Consensus       351 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~-------~~~i~~~~~s~~~---~~l~~~~~dg~i~i~d~~~~~~~~~  417 (768)
                       +|..+|..++.          .......  |       ......+....+|   ..+++++.+|.++++|..+++.+..
T Consensus       283 ~sv~AlD~~TG~----------~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~  352 (677)
T 1kb0_A          283 ASIVALDPDTGK----------YKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISA  352 (677)
T ss_dssp             TEEEEECTTTCC----------EEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             EEEEEEECCCCC----------EEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecc
Confidence             48888887553          2222111  1       1122333444477   6899999999999999999998876


Q ss_pred             EeccC-----------CCe------------------------EEEEEccCCCEEEEeeC--------------------
Q 004214          418 FRGHK-----------RGI------------------------WSVEFSPVDQVVITASG--------------------  442 (768)
Q Consensus       418 ~~~~~-----------~~v------------------------~~v~~s~~~~~l~t~~~--------------------  442 (768)
                      +....           .++                        ..++|+|++.++++...                    
T Consensus       353 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~  432 (677)
T 1kb0_A          353 KNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPG  432 (677)
T ss_dssp             EESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTT
T ss_pred             ccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccc
Confidence            65221           111                        15788999888877543                    


Q ss_pred             -----------------------CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEE
Q 004214          443 -----------------------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI  499 (768)
Q Consensus       443 -----------------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  499 (768)
                                             .|.|..||+.+++.+.++. +..++....++.++..++.++.||.+++||..+|+.+
T Consensus       433 ~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l  511 (677)
T 1kb0_A          433 KPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (677)
T ss_dssp             STTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence                                   2789999999999988887 3444555667788889999999999999999999999


Q ss_pred             EEeccCCC-cEEEEEEcCCCCEEEEE-eC----------------CCcEEEEEcC
Q 004214          500 ATYDKHED-KIWALAVGKKTEMFATG-GS----------------DALVNLWHDS  536 (768)
Q Consensus       500 ~~~~~~~~-~v~~l~~s~~~~~l~s~-~~----------------dg~v~vw~~~  536 (768)
                      .++....+ ....+.+..+|+.+++. +.                .+.+..|.+.
T Consensus       512 w~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~  566 (677)
T 1kb0_A          512 WEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG  566 (677)
T ss_dssp             EEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred             eeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence            99874432 22334566788754432 22                3567777765

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.32  E-value=3.1e-11  Score=122.93  Aligned_cols=172  Identities=14%  Similarity=0.093  Sum_probs=127.1

Q ss_pred             ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce-----------EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeE
Q 004214          284 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-----------CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI  352 (768)
Q Consensus       284 ~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i  352 (768)
                      .+..++  ..+..+. +++|+.+ .+.+|++....           .... ..+.. |+.++|  ++. +|+++ .++.|
T Consensus        39 ~~nlLa--is~~~gl-l~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~-~L~v~-~~~~l  108 (388)
T 1xip_A           39 SLQNLD--ISNSKSL-FVAASGS-KAVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGD-QVLVS-TRNAL  108 (388)
T ss_dssp             CCBCEE--EETTTTE-EEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETT-EEEEE-ESSEE
T ss_pred             cccEEE--EcCCCCE-EEEeCCC-EEEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCC-EEEEE-cCCcE
Confidence            455554  5566665 8888877 45569854322           1112 23556 999999  544 67777 88999


Q ss_pred             EEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEcc
Q 004214          353 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP  432 (768)
Q Consensus       353 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~  432 (768)
                      ++||+....          .......|...+.++.+.+..  +++++.||.+.+||+.++....    +...|+|++|||
T Consensus       109 ~v~dv~sl~----------~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp  172 (388)
T 1xip_A          109 YSLDLEELS----------EFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN  172 (388)
T ss_dssp             EEEESSSTT----------CEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred             EEEEchhhh----------ccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence            999998542          222345566778887766543  8889999999999999877643    456899999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCce--eEEe------e---cCCCcEEEEEEEeCCCEEEEEe
Q 004214          433 VDQVVITASGDKTIKIWSISDGSC--LKTF------E---GHTSSVLRASFLTRGAQIVSCG  483 (768)
Q Consensus       433 ~~~~l~t~~~d~~i~iwd~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~~l~s~~  483 (768)
                      +|  ++.|..||++++|+...+.+  .+++      .   +|...|.+++|.+++.++++-+
T Consensus       173 kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          173 SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            99  67899999999999877775  5666      2   4789999999999999988743

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.31  E-value=5.3e-10  Score=127.61  Aligned_cols=242  Identities=12%  Similarity=-0.040  Sum_probs=156.2

Q ss_pred             CceeEEEEecCCCCEEEEEeCC-----CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC-------
Q 004214          240 EEILDLKFLGEEEQYLAVATNI-----EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN-------  307 (768)
Q Consensus       240 ~~i~~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg-------  307 (768)
                      ..+...+|+ +++++++.+..+     ..|++||+.+++..... .+...+..+.  ++++ +. |+.++.++       
T Consensus       163 ~~~~~~~~S-PDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~--wspD-~~-l~~~~~~~~~~~~~~  236 (741)
T 1yr2_A          163 TALDAWAAS-DDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLA--WLGN-DA-LLYSRFAEPKEGQAF  236 (741)
T ss_dssp             EEEEEEEEC-TTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCE--ESTT-SE-EEEEECCCC------
T ss_pred             EEEEeEEEC-CCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEE--EECC-CE-EEEEEecCccccccc
Confidence            356778888 577777766543     35999999999875431 1111122343  6677 66 55555544       


Q ss_pred             -------eEEEEeCCCce----EEEeeecccCcEEEEEEecCCCcEEEEEeCC-----CeEEEEeCCCCCCCCccccccc
Q 004214          308 -------SVRLWDSESRC----CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQPMNLK  371 (768)
Q Consensus       308 -------~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~  371 (768)
                             .|++|++.++.    .+.....+...+..+.|+|+|+. ++..+.+     ..|.+||+..+.        ..
T Consensus       237 ~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~-l~~~~~~~~~~~~~l~~~d~~~~~--------~~  307 (741)
T 1yr2_A          237 QALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW-VVITSSEGTDPVNTVHVARVTNGK--------IG  307 (741)
T ss_dssp             --CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE-EEEEEECTTCSCCEEEEEEEETTE--------EC
T ss_pred             ccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE-EEEEEEccCCCcceEEEEECCCCC--------Cc
Confidence                   38999987764    33333334446889999999884 5544433     479999986431        01


Q ss_pred             eeeEeeccCCCeEEEEEccCCCEEEEEeCC----CcEEEEeCCCC--ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCc
Q 004214          372 AKAVVAAHGKDINSLAVAPNDSLVCTGSQD----RTACVWRLPDL--VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT  445 (768)
Q Consensus       372 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~  445 (768)
                      ....+..+...+... ++|+|+.|+..+.+    +.|.+||+.++  .....+..+...+..++++ ++.++++...|+.
T Consensus       308 ~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~  385 (741)
T 1yr2_A          308 PVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK  385 (741)
T ss_dssp             CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE
T ss_pred             ccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence            012223333444444 35889888887764    45999999875  3333444455567778887 5678888888888


Q ss_pred             EEEEeCC-CCceeEEeec-CCCcEEEEEEEeCCCEEEEE----eCCCcEEEEECCCCeE
Q 004214          446 IKIWSIS-DGSCLKTFEG-HTSSVLRASFLTRGAQIVSC----GADGLVKLWTVRTGEC  498 (768)
Q Consensus       446 i~iwd~~-~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~----~~dg~i~iwd~~~~~~  498 (768)
                      .+||.+. ++.....+.. +...+..+.++|+++.|+..    ...++|++||+.+++.
T Consensus       386 ~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          386 SQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             EEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            7777554 4666677764 36778889999998866532    2347899999988873

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.31  E-value=4e-11  Score=122.55  Aligned_cols=216  Identities=16%  Similarity=0.043  Sum_probs=139.2

Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEE
Q 004214          254 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV  333 (768)
Q Consensus       254 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  333 (768)
                      .+.+++.++.+..+|.. +........+...+.++.  . ..++. +..++.++.|..+|.. ++....+......+.++
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~--~-~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~  182 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPI--V-SEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAA  182 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE--E-CTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred             EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeE--E-cCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeee
Confidence            45555555666666666 554444443333333332  2 22344 6778888999999998 77766666556667777


Q ss_pred             EEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 004214          334 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV  413 (768)
Q Consensus       334 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  413 (768)
                      ...+++.  +..++  +.+..+| ..+.          ...........+.++..+++|. +.+++.++.+..++ .+++
T Consensus       183 ~~d~~g~--l~v~t--~~l~~~d-~~g~----------~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~  245 (330)
T 3hxj_A          183 SIGKDGT--IYFGS--DKVYAIN-PDGT----------EKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGT  245 (330)
T ss_dssp             EECTTCC--EEEES--SSEEEEC-TTSC----------EEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEEC-TTSC
T ss_pred             EEcCCCE--EEEEe--CEEEEEC-CCCc----------EEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEEC-CCCC
Confidence            7777755  45555  7788888 4321          2222223345677888888875 55567778888887 4566


Q ss_pred             eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214          414 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  493 (768)
                      .+..+......+.++.+.+++. |..++.+|.|..+|. +++.+..+......+.++...++|+ |..++.+|.+++...
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~  322 (330)
T 3hxj_A          246 EKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFN  322 (330)
T ss_dssp             EEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC
T ss_pred             EeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEec
Confidence            6666665544455566666665 556777788999996 7887777765556666677667765 566888999998765


Q ss_pred             CC
Q 004214          494 RT  495 (768)
Q Consensus       494 ~~  495 (768)
                      +.
T Consensus       323 ~~  324 (330)
T 3hxj_A          323 LE  324 (330)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.30  E-value=2.5e-10  Score=116.22  Aligned_cols=280  Identities=11%  Similarity=-0.048  Sum_probs=175.3

Q ss_pred             cEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEE--------eCCCcEEEEECCCCeeEEEecCc-------cc
Q 004214           11 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG--------SDDATVRVWDLLAKKCVATLDKH-------FS   75 (768)
Q Consensus        11 ~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg--------~~dg~I~iWd~~~~~~~~~l~~h-------~~   75 (768)
                      .|.|+|..+++.+.++.....+  .++|+||+++.+++..        ..++.|.+||+.+++.+.++..+       ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            8889999999999999865566  7999999998444442        24788999999999999998643       12


Q ss_pred             eeEEEEEcCCCCEEEEEeC--CCeEEE--EECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcce
Q 004214           76 RVTSMAITSDGSTLISAGR--DKVVNL--WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEI  151 (768)
Q Consensus        76 ~V~~l~fs~d~~~L~s~~~--dg~i~v--Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (768)
                      ....++|+|||++|+.+..  +..|.+  +|..+   +..++....   ..+.|.+.                      .
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~----------------------~  176 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAA----------------------A  176 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEET----------------------T
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCC----------------------e
Confidence            4678999999999998864  467888  99877   344432211   11122221                      1


Q ss_pred             EEEEeeCCcEEEEEEcCC-----ceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccc
Q 004214          152 HFITVGERGIVRMWNADS-----ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK  226 (768)
Q Consensus       152 ~~~~~~~~g~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~  226 (768)
                      .+++.+.+|.+...++.+     +.......  .  ....  .....   . .+.+..++.++. +.+.+.+........
T Consensus       177 ~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t--~--~i~v--g~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v  245 (368)
T 1mda_H          177 THYLGSCPASLAASDLAAAPAAAGIVGAQCT--G--AQNC--SSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATM  245 (368)
T ss_dssp             EEECCCCTTSCEEEECCSSCCCCEECCCCSC--T--TSCB--CSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEE
T ss_pred             EEEEEcCCCCEEEEECccccccCCeEEEEee--e--eeeC--CCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceE
Confidence            456677788888888876     33221110  0  0000  11111   2 566677666666 888888775321100


Q ss_pred             ee-eEEEee---ecc-cCCceeEEEEecCCCCEEEEEeC---------CCcEEEEECCCceeeeeeeCCccceEEEeeee
Q 004214          227 ME-LILSKR---LVG-YNEEILDLKFLGEEEQYLAVATN---------IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA  292 (768)
Q Consensus       227 ~~-~~~~~~---~~~-~~~~i~~~~~~~~~~~~l~~~~~---------~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~  292 (768)
                      .. ......   ..+ .......+.+.+ ++..+.++..         .+.+.++|+.+.+.+..+.... ...++.  +
T Consensus       246 ~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~--~  321 (368)
T 1mda_H          246 KAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAII--A  321 (368)
T ss_dssp             ECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEE--E
T ss_pred             EEEEEeccccccccccccCcceeeEEcC-CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEE--E
Confidence            00 000000   000 001111145665 4555555432         2456799999999888876544 455665  7


Q ss_pred             ecCCCEEEEEEe-CCCeEEEEeCCCceEEEeeecccCcEEEEEEe
Q 004214          293 LSSGKILIVTGS-KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS  336 (768)
Q Consensus       293 ~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  336 (768)
                      .++++.++++.. .++.|.++|+.+++.+..+.....+ ..+++.
T Consensus       322 s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P-~~i~~~  365 (368)
T 1mda_H          322 AQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP-ESLSVQ  365 (368)
T ss_dssp             CCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC-CEEECC
T ss_pred             CCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCC-CEEEee
Confidence            788887678877 6999999999999999888754432 344443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.28  E-value=1.7e-09  Score=121.15  Aligned_cols=258  Identities=11%  Similarity=0.050  Sum_probs=168.8

Q ss_pred             CCEEEEEeCCCcEEEEECCCceeeeeeeCC--ccceEEEeeeeecCCCEEEEEEe------CCCeEEEEeCCCceEEEee
Q 004214          252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGH--SEIVLCLDTCALSSGKILIVTGS------KDNSVRLWDSESRCCVGVG  323 (768)
Q Consensus       252 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~v~~l~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~  323 (768)
                      +..+++++.++.+..+|..+++.+......  ......+.....-.++. ++.++      .+|.|+.||..+|+.+..+
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            347778888899999999999988766542  11111110001111344 44443      3789999999999988766


Q ss_pred             eccc-------------------------------CcEEEEEEecCCCcEEEEEeCCCe-------------------EE
Q 004214          324 TGHM-------------------------------GAVGAVAFSKKLQNFLVSGSSDHT-------------------IK  353 (768)
Q Consensus       324 ~~~~-------------------------------~~v~~~~~~~~~~~~l~s~~~dg~-------------------i~  353 (768)
                      ....                               ..-..++++|+.. +++.++.++.                   |.
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~  278 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV  278 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            4210                               0112567888755 6778877764                   88


Q ss_pred             EEeCCCCCCCCccccccceeeEeec--cC-------CCeEEEEEccCCC---EEEEEeCCCcEEEEeCCCCceEEEEecc
Q 004214          354 VWSFDGLSDDAEQPMNLKAKAVVAA--HG-------KDINSLAVAPNDS---LVCTGSQDRTACVWRLPDLVSVVTFRGH  421 (768)
Q Consensus       354 iwd~~~~~~~~~~~~~~~~~~~~~~--~~-------~~i~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~  421 (768)
                      .||..++.          .......  |.       ..+.......+|+   .++.++.+|.++++|..+++.+......
T Consensus       279 AlD~~TG~----------~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~  348 (689)
T 1yiq_A          279 AVNADTGE----------YVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIV  348 (689)
T ss_dssp             EEETTTCC----------EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred             EEEccCCc----------eeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccc
Confidence            99988653          2222211  11       1222223333565   7889999999999999999987543211


Q ss_pred             CC---------------------------------------CeEEEEEccCCCEEEEeeC--------------------
Q 004214          422 KR---------------------------------------GIWSVEFSPVDQVVITASG--------------------  442 (768)
Q Consensus       422 ~~---------------------------------------~v~~v~~s~~~~~l~t~~~--------------------  442 (768)
                      ..                                       .-..++|+|+..++++...                    
T Consensus       349 ~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~  428 (689)
T 1yiq_A          349 PQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKS  428 (689)
T ss_dssp             CCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTT
T ss_pred             ccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccc
Confidence            10                                       0113788998888876532                    


Q ss_pred             -------------------------CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe
Q 004214          443 -------------------------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE  497 (768)
Q Consensus       443 -------------------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  497 (768)
                                               +|.|+.||+.+|+.+.++..+. +.....++..+..++.++.||.|+.||.++|+
T Consensus       429 ~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~  507 (689)
T 1yiq_A          429 MYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGE  507 (689)
T ss_dssp             SCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence                                     3789999999999998887543 33344677788899999999999999999999


Q ss_pred             EEEEeccCCCcE-EEEEEcCCCCEEE
Q 004214          498 CIATYDKHEDKI-WALAVGKKTEMFA  522 (768)
Q Consensus       498 ~~~~~~~~~~~v-~~l~~s~~~~~l~  522 (768)
                      .+.++....+.+ .-+.+..+|+..+
T Consensus       508 ~lw~~~~~~~~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          508 KLWEQPAASGVMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             EEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceeeeCCCCcccCceEEEECCEEEE
Confidence            999887543322 3456677887443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.27  E-value=7.6e-10  Score=123.66  Aligned_cols=280  Identities=9%  Similarity=0.034  Sum_probs=188.4

Q ss_pred             CCEEEEEeCCCcEEEEECCCceeeeeeeCCccc----------e-EEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214          252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEI----------V-LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV  320 (768)
Q Consensus       252 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~----------v-~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  320 (768)
                      +..+++++.++.|.-+|..+++.+..+......          + ..+.    ..++. ++.++.|+.|..+|..+++.+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~-v~v~~~dg~l~alD~~tG~~~  151 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVA----LWKGK-VYVGAWDGRLIALDAATGKEV  151 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCE----EETTE-EEEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCce----EECCE-EEEEcCCCEEEEEECCCCCEE
Confidence            446777777899999999999998777543221          0 1111    12444 788889999999999999998


Q ss_pred             Eeeecc-c----CcEEE-EEEecCCCcEEEEEeC------CCeEEEEeCCCCCCCCccccccce----------------
Q 004214          321 GVGTGH-M----GAVGA-VAFSKKLQNFLVSGSS------DHTIKVWSFDGLSDDAEQPMNLKA----------------  372 (768)
Q Consensus       321 ~~~~~~-~----~~v~~-~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~----------------  372 (768)
                      ..+..+ .    ..+.+ ..+. + . .++.++.      +|.|..||..++...-........                
T Consensus       152 W~~~~~~~~~~~~~~~~~p~v~-~-~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~  228 (677)
T 1kb0_A          152 WHQNTFEGQKGSLTITGAPRVF-K-G-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART  228 (677)
T ss_dssp             EEEETTTTCCSSCBCCSCCEEE-T-T-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred             eeecCCcCcCcCcccccCcEEE-C-C-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccc
Confidence            877654 1    11111 1111 2 3 3555543      689999998866421110000000                


Q ss_pred             ----eeEe--eccCCCeEEEEEccCCCEEEEEeCCC-------------------cEEEEeCCCCceEEEEeccC-----
Q 004214          373 ----KAVV--AAHGKDINSLAVAPNDSLVCTGSQDR-------------------TACVWRLPDLVSVVTFRGHK-----  422 (768)
Q Consensus       373 ----~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~-----  422 (768)
                          ....  .........++++|++.++++++.++                   .|..+|..+++.+..++...     
T Consensus       229 w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd  308 (677)
T 1kb0_A          229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWD  308 (677)
T ss_dssp             SCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred             ccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccc
Confidence                0000  01222234678999999999888764                   49999999999988876421     


Q ss_pred             ----CCeEEEEEccCC---CEEEEeeCCCcEEEEeCCCCceeEEeecCCC-----------cE-----------------
Q 004214          423 ----RGIWSVEFSPVD---QVVITASGDKTIKIWSISDGSCLKTFEGHTS-----------SV-----------------  467 (768)
Q Consensus       423 ----~~v~~v~~s~~~---~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~-----------~v-----------------  467 (768)
                          .....+....+|   ..++.++.+|.++++|..+|+.+..+.....           ++                 
T Consensus       309 ~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~  388 (677)
T 1kb0_A          309 YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG  388 (677)
T ss_dssp             CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred             cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence                122333444577   6899999999999999999999877652210           11                 


Q ss_pred             -------EEEEEEeCCCEEEEEeC-------------------------------------------CCcEEEEECCCCe
Q 004214          468 -------LRASFLTRGAQIVSCGA-------------------------------------------DGLVKLWTVRTGE  497 (768)
Q Consensus       468 -------~~~~~s~~~~~l~s~~~-------------------------------------------dg~i~iwd~~~~~  497 (768)
                             ..++|+|++.++++...                                           .|.|..||+.+|+
T Consensus       389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~  468 (677)
T 1kb0_A          389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK  468 (677)
T ss_dssp             TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred             cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence                   14678898888877543                                           2789999999999


Q ss_pred             EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214          498 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE  540 (768)
Q Consensus       498 ~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~  540 (768)
                      .+.++. +..++++..+..++..++.++.||.+++||..+++.
T Consensus       469 ~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          469 AAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             EEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             EEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence            998886 445555566777888899999999999999988764

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.27  E-value=2.3e-10  Score=117.28  Aligned_cols=190  Identities=12%  Similarity=0.030  Sum_probs=109.8

Q ss_pred             eEEEEecCCCCEEEEEe---CCCcEEEEECCCceeeeeeeCCccceE-EEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214          243 LDLKFLGEEEQYLAVAT---NIEQVQVYDLSSMSCSYVLAGHSEIVL-CLDTCALSSGKILIVTGSKDNSVRLWDSESRC  318 (768)
Q Consensus       243 ~~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  318 (768)
                      .++++.+.++..+++..   .++.|.+||..+++..+.+.+|..... ...  +..++.. +.+.+.+|.+..|.     
T Consensus       123 ~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~--~~~~g~~-~~~~~~~g~~~~~~-----  194 (343)
T 2qe8_A          123 NDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID--LVIDGVP-VQIGQPDGTVIRPH-----  194 (343)
T ss_dssp             CEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC--CEETTEE-CBEECTTSCEECCC-----
T ss_pred             ceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc--eeECCEE-EEeccCCCceecee-----
Confidence            34444433333334333   468899999998887766655432111 011  2233433 66667777776553     


Q ss_pred             EEEeeecccCcEEEEEEecCCCcEEEEEeCCC-eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEE
Q 004214          319 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT  397 (768)
Q Consensus       319 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  397 (768)
                               ..+..++++|+++ .|+.+..++ .+..++.....................++......++++++|.++++
T Consensus       195 ---------~~~~gia~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va  264 (343)
T 2qe8_A          195 ---------LGVNGIVLDAENE-WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVG  264 (343)
T ss_dssp             ---------CCEEEEEECTTSC-EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEE
T ss_pred             ---------cccceeEeccCCC-EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEE
Confidence                     2357899999987 455555544 44444432100000000000000011233345678999999999999


Q ss_pred             EeCCCcEEEEeCCCCceEEEEec-cCCCeEEEEEccCCCEEEEeeCCCcEEEEe
Q 004214          398 GSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWS  450 (768)
Q Consensus       398 ~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd  450 (768)
                      ...++.|.+||..+++....... +...+++++|.++++++++.+..+.+.+|.
T Consensus       265 ~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          265 DLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             EGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             ccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence            88899999999856654333332 245689999999999888887655554443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.25  E-value=1.4e-08  Score=103.17  Aligned_cols=221  Identities=12%  Similarity=0.041  Sum_probs=148.4

Q ss_pred             eEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe
Q 004214          243 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV  322 (768)
Q Consensus       243 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  322 (768)
                      ....|.+.++.++++...++.|..||..++.... +. ....+.++.  +.+++.. ++ ++.+ .|.+||..+++....
T Consensus        52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~--~~~dg~l-~v-~~~~-gl~~~d~~~g~~~~~  124 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALA--KISDSKQ-LI-ASDD-GLFLRDTATGVLTLH  124 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEE--EEETTEE-EE-EETT-EEEEEETTTCCEEEE
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEE--EeCCCeE-EE-EECC-CEEEEECCCCcEEEE
Confidence            4567777667777888788999999998876542 22 235677776  5566553 44 3444 599999988775443


Q ss_pred             eec----ccCcEEEEEEecCCCcEEEEEeC------CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214          323 GTG----HMGAVGAVAFSKKLQNFLVSGSS------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND  392 (768)
Q Consensus       323 ~~~----~~~~v~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  392 (768)
                      ...    ....+..++++|+|. ++++...      .+.|..++ . +        .   ......+....+.++|+|++
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~-~-g--------~---~~~~~~~~~~~~~i~~s~dg  190 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA-K-G--------K---VTKLFADISIPNSICFSPDG  190 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE-T-T--------E---EEEEEEEESSEEEEEECTTS
T ss_pred             eeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe-C-C--------c---EEEeeCCCcccCCeEEcCCC
Confidence            221    123588999999987 4444332      23444444 2 1        1   11111223456789999999


Q ss_pred             CEEEEE-eCCCcEEEEeCC--CC-ce-----EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecC
Q 004214          393 SLVCTG-SQDRTACVWRLP--DL-VS-----VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH  463 (768)
Q Consensus       393 ~~l~~~-~~dg~i~i~d~~--~~-~~-----~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~  463 (768)
                      +.++.+ +.++.|.+|++.  ++ ..     ...+......+..++++++|++.++...++.|.+||. +++.+..+..+
T Consensus       191 ~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~  269 (326)
T 2ghs_A          191 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP  269 (326)
T ss_dssp             CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS
T ss_pred             CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC
Confidence            876555 456889999986  55 31     2222223455788999999998887777789999998 68888888877


Q ss_pred             CCcEEEEEEE-eCCCEEEEEeCC
Q 004214          464 TSSVLRASFL-TRGAQIVSCGAD  485 (768)
Q Consensus       464 ~~~v~~~~~s-~~~~~l~s~~~d  485 (768)
                      ...+++++|+ ++++.|+.++..
T Consensus       270 ~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          270 GKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             CSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCCcEEEEEecCCCCEEEEEecC
Confidence            7789999998 888877655443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.25  E-value=1e-09  Score=122.96  Aligned_cols=286  Identities=10%  Similarity=0.037  Sum_probs=183.4

Q ss_pred             CCEEEEEeCCCcEEEEECCCceeeeeeeCCccce----E-E--EeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee
Q 004214          252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV----L-C--LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT  324 (768)
Q Consensus       252 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v----~-~--l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  324 (768)
                      +..+++++.++.|..+|..+++.+..+..+....    . |  +.......++. ++.++.|+.|..+|..+|+.+..+.
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-v~v~~~dg~l~AlDa~TG~~~W~~~  148 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGK-VYVGVLDGRLEAIDAKTGQRAWSVD  148 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTE-EEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCE-EEEEccCCEEEEEECCCCCEeeeec
Confidence            4577778888999999999999988775432210    0 0  00001112444 7888899999999999999887765


Q ss_pred             cc--cCcEEEEEEec---CCCcEEEEEe------CCCeEEEEeCCCCCCCCcccc-cccee------------eEe----
Q 004214          325 GH--MGAVGAVAFSK---KLQNFLVSGS------SDHTIKVWSFDGLSDDAEQPM-NLKAK------------AVV----  376 (768)
Q Consensus       325 ~~--~~~v~~~~~~~---~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~-~~~~~------------~~~----  376 (768)
                      ..  ......+..+|   + . .++.++      .+|.|..||..++...-.... .....            ...    
T Consensus       149 ~~~~~~~~~~~~~sP~v~~-g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  226 (689)
T 1yiq_A          149 TRADHKRSYTITGAPRVVN-G-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA  226 (689)
T ss_dssp             CCSCTTSCCBCCSCCEEET-T-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred             CcCCCCCCccccCCcEEEC-C-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence            42  11101111111   3 2 344443      368999999887642111000 00000            000    


Q ss_pred             ----eccCCCeEEEEEccCCCEEEEEeCCCc-------------------EEEEeCCCCceEEEEecc--C-------CC
Q 004214          377 ----AAHGKDINSLAVAPNDSLVCTGSQDRT-------------------ACVWRLPDLVSVVTFRGH--K-------RG  424 (768)
Q Consensus       377 ----~~~~~~i~~~~~s~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~--~-------~~  424 (768)
                          ..+......++++|++.++++++.++.                   |..+|..+++.+..++..  .       .+
T Consensus       227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~  306 (689)
T 1yiq_A          227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH  306 (689)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence                011122236789998899999988764                   999999999999887752  1       12


Q ss_pred             eEEEEEccCCC---EEEEeeCCCcEEEEeCCCCceeEEeecCC-Cc----------------------------------
Q 004214          425 IWSVEFSPVDQ---VVITASGDKTIKIWSISDGSCLKTFEGHT-SS----------------------------------  466 (768)
Q Consensus       425 v~~v~~s~~~~---~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-~~----------------------------------  466 (768)
                      +.......+|+   .++.++.+|.++++|..+|+.+....-.. ..                                  
T Consensus       307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~  386 (689)
T 1yiq_A          307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW  386 (689)
T ss_dssp             EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred             cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence            22223333565   78899999999999999999875433110 00                                  


Q ss_pred             ----EEEEEEEeCCCEEEEEeC---------------------------------------------CCcEEEEECCCCe
Q 004214          467 ----VLRASFLTRGAQIVSCGA---------------------------------------------DGLVKLWTVRTGE  497 (768)
Q Consensus       467 ----v~~~~~s~~~~~l~s~~~---------------------------------------------dg~i~iwd~~~~~  497 (768)
                          -..++|+|+...+++...                                             +|.|+.||+.+|+
T Consensus       387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~  466 (689)
T 1yiq_A          387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ  466 (689)
T ss_dssp             CSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred             cccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence                012678888887776532                                             3789999999999


Q ss_pred             EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHH
Q 004214          498 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER  541 (768)
Q Consensus       498 ~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~  541 (768)
                      .+.++..+ .++..-.++..+..++.|+.||.|+.||..+++..
T Consensus       467 ~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l  509 (689)
T 1yiq_A          467 AAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL  509 (689)
T ss_dssp             EEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             eEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence            99888744 33444455667889999999999999999988653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.22  E-value=9.8e-10  Score=124.09  Aligned_cols=153  Identities=8%  Similarity=0.023  Sum_probs=97.0

Q ss_pred             eecCCCEEEEEEeC---CCeEEEEeCCCce-EEEeeecccCcEEEEEEecCCCcEEEEEeCC---CeEEEEeCCCCCCCC
Q 004214          292 ALSSGKILIVTGSK---DNSVRLWDSESRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD---HTIKVWSFDGLSDDA  364 (768)
Q Consensus       292 ~~~~~~~~l~~~~~---dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~  364 (768)
                      ++++++.++++.+.   ++.|+++|+.++. ....+..+....... +++++..+++....+   +.|..+++.....  
T Consensus       241 ~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~--  317 (693)
T 3iuj_A          241 VTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP--  317 (693)
T ss_dssp             ECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG--
T ss_pred             EcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc--
Confidence            56666665555443   2588999987652 233444555555554 666767666666554   6788888875421  


Q ss_pred             ccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC---cEEEEeCCCCceEEEEe-ccCCCeEEEEEccCCCEEEEe
Q 004214          365 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR---TACVWRLPDLVSVVTFR-GHKRGIWSVEFSPVDQVVITA  440 (768)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~t~  440 (768)
                            .....+..|...+.  .|+++++.|+....++   .|++|++..+. ...+. .....+..+.++|++..++..
T Consensus       318 ------~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~  388 (693)
T 3iuj_A          318 ------AHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFG  388 (693)
T ss_dssp             ------GGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEE
T ss_pred             ------cccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEE
Confidence                  11123344555554  8899888887766544   68899987543 34443 244567778888888766655


Q ss_pred             eCC----CcEEEEeCCCCce
Q 004214          441 SGD----KTIKIWSISDGSC  456 (768)
Q Consensus       441 ~~d----~~i~iwd~~~~~~  456 (768)
                      ..+    ++|..||+.+++.
T Consensus       389 ~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          389 FENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EECSSSCCEEEEECTTTCCE
T ss_pred             ecCCCCCCEEEEEECCCCeE
Confidence            444    7899999987753

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.21  E-value=2.5e-09  Score=120.77  Aligned_cols=243  Identities=10%  Similarity=0.073  Sum_probs=157.6

Q ss_pred             CccceEEEeeeeecCCCEEEEEEeCC----CeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCC------
Q 004214          281 HSEIVLCLDTCALSSGKILIVTGSKD----NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH------  350 (768)
Q Consensus       281 ~~~~v~~l~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg------  350 (768)
                      |...+..+.  ++++++.++++.+..    ..|++||+.+++.+.... +......++|+ |++. |+.++.+.      
T Consensus       127 ~~~~l~~~~--~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~-l~y~~~~~~~~~~~  201 (693)
T 3iuj_A          127 GTTALDQLS--FSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEG-FFYSSYDKPDGSEL  201 (693)
T ss_dssp             SCCEEEEEE--ECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTE-EEEEESSCCC----
T ss_pred             CcEEEEEEE--ECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCE-EEEEEecCcccccc
Confidence            444566665  778888755544433    479999999998655311 11112567899 8775 55555553      


Q ss_pred             -------eEEEEeCCCCCCCCccccccceeeEeec-cCCCeEEEEEccCCCEEEEEeC----CCcEEEEeCCCCc-eEEE
Q 004214          351 -------TIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKDINSLAVAPNDSLVCTGSQ----DRTACVWRLPDLV-SVVT  417 (768)
Q Consensus       351 -------~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~  417 (768)
                             .|++|++......      ......... |.....++.++|||++|+....    +..|+++|+.++. ....
T Consensus       202 ~~~~~~~~v~~~~lgt~~~~------~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~  275 (693)
T 3iuj_A          202 SARTDQHKVYFHRLGTAQED------DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT  275 (693)
T ss_dssp             ---CCCCEEEEEETTSCGGG------CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred             cccCCCcEEEEEECCCCccc------ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence                   4888988643210      011111122 3445788999999998866543    2489999998764 4555


Q ss_pred             EeccCCCeEEEEEccCCCEEE-EeeCC---CcEEEEeCCCCce--eEEeecCCCcEEEEEEEeCCCEEEEEeC-CC--cE
Q 004214          418 FRGHKRGIWSVEFSPVDQVVI-TASGD---KTIKIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGA-DG--LV  488 (768)
Q Consensus       418 ~~~~~~~v~~v~~s~~~~~l~-t~~~d---~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg--~i  488 (768)
                      +..+....... ++++|..|+ .+..+   +.|..+|+.++..  ...+..|...+.  .|++++++|+.... +|  .|
T Consensus       276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l  352 (693)
T 3iuj_A          276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARV  352 (693)
T ss_dssp             EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred             EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEE
Confidence            66666666655 666665554 44333   6799999988765  456666777665  89999998877665 44  68


Q ss_pred             EEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCC----CcEEEEEcCCH
Q 004214          489 KLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSD----ALVNLWHDSTA  538 (768)
Q Consensus       489 ~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~s~~~d----g~v~vw~~~~~  538 (768)
                      ++|++..+. ...+. ...+.+..+.+++++..++....+    +.+..|++.++
T Consensus       353 ~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          353 EQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG  406 (693)
T ss_dssp             EEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred             EEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence            999987554 44443 244567788888888876655544    78888887664

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.14  E-value=1.4e-07  Score=92.68  Aligned_cols=249  Identities=10%  Similarity=0.087  Sum_probs=158.1

Q ss_pred             EEEEEeCCCcEEEEECCCceee-----eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccC
Q 004214          254 YLAVATNIEQVQVYDLSSMSCS-----YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMG  328 (768)
Q Consensus       254 ~l~~~~~~~~i~i~d~~~~~~~-----~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  328 (768)
                      +|+.+.. +.|+.+++......     ..+......+.+++  +.+.++.++++...++.|..++...+...........
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~--~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~   79 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLA--FDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG   79 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEE--EETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEE--EecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence            4444443 47888887654321     11222223455665  6666777677777788999999987654443333335


Q ss_pred             cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC---CCcEE
Q 004214          329 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ---DRTAC  405 (768)
Q Consensus       329 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~  405 (768)
                      ....+++++++..++++-...+.|.++++....          ..............++++|++..|..+..   .+.|.
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~----------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~  149 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ----------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIE  149 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEE
T ss_pred             CccEEEEEecCCeEEEEECCCCEEEEEEcCCCC----------EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEE
Confidence            678999999867667777778899999986421          01111112245789999997665555554   36888


Q ss_pred             EEeCCCCceEEEE-eccCCCeEEEEEccCCCEEE-EeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEe
Q 004214          406 VWRLPDLVSVVTF-RGHKRGIWSVEFSPVDQVVI-TASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG  483 (768)
Q Consensus       406 i~d~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~-t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  483 (768)
                      .+++.... ...+ .........++++|++..|+ +-...+.|.++|+........+.+ ......++.  ++..|+.+.
T Consensus       150 ~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~--d~~~lyva~  225 (267)
T 1npe_A          150 TSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTS--YGKNLYYTD  225 (267)
T ss_dssp             EEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEE--ETTEEEEEE
T ss_pred             EEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEE--eCCEEEEEE
Confidence            88875432 2222 22334678999999876554 445568899999875443333332 233455654  455665555


Q ss_pred             -CCCcEEEEECCCCeEEEEeccCC-CcEEEEEEcCCCC
Q 004214          484 -ADGLVKLWTVRTGECIATYDKHE-DKIWALAVGKKTE  519 (768)
Q Consensus       484 -~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~~~~  519 (768)
                       ..+.|.++|..+++.+.++.... .....+++.|++.
T Consensus       226 ~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          226 WKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence             46799999999999998886433 2467788888764

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.14  E-value=3e-09  Score=109.00  Aligned_cols=261  Identities=10%  Similarity=-0.025  Sum_probs=161.8

Q ss_pred             CceeEEEEecCCCCEEEEEeC--CCcEEEEECCCceeeeee-------eCCccceEEEeeeeecCCCEEEEEEeC-----
Q 004214          240 EEILDLKFLGEEEQYLAVATN--IEQVQVYDLSSMSCSYVL-------AGHSEIVLCLDTCALSSGKILIVTGSK-----  305 (768)
Q Consensus       240 ~~i~~~~~~~~~~~~l~~~~~--~~~i~i~d~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~~~~l~~~~~-----  305 (768)
                      ..+..+++.+ +++++++...  ++.++||.+.++... .+       ..+...+.++.  +.+++ .++++...     
T Consensus        17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~--~d~~g-~L~v~D~g~~~~~   91 (343)
T 2qe8_A           17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIK--SDGNG-IVWMLDNGNQSKS   91 (343)
T ss_dssp             SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEE--ECSSS-EEEEEECHHHHTS
T ss_pred             CCcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEE--EcCCC-cEEEEcCCCCcCC
Confidence            4567777764 5566666432  342444443344432 22       22445677775  55555 43454433     


Q ss_pred             CCeEEEEeCCCceEEEeeecc------cCcEEEEEEecCCCcEEEEEe---CCCeEEEEeCCCCCCCCccccccceeeEe
Q 004214          306 DNSVRLWDSESRCCVGVGTGH------MGAVGAVAFSKKLQNFLVSGS---SDHTIKVWSFDGLSDDAEQPMNLKAKAVV  376 (768)
Q Consensus       306 dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  376 (768)
                      ++.|.+||+.+++.+..+..+      ...+..+++++++...+++..   .++.|.+||+..+.          .....
T Consensus        92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~----------~~r~~  161 (343)
T 2qe8_A           92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL----------AARVL  161 (343)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC----------EEEEC
T ss_pred             CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC----------EEEEe
Confidence            579999999999877665432      234688999987565556665   68899999987432          22222


Q ss_pred             eccCCC-eEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCC-cEEEEeCC--
Q 004214          377 AAHGKD-INSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK-TIKIWSIS--  452 (768)
Q Consensus       377 ~~~~~~-i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~-~i~iwd~~--  452 (768)
                      ..|... .....+.++|..+.+.+.+|.+..|.              ..+..++|+|+++.|+.+..++ .+..++..  
T Consensus       162 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~  227 (343)
T 2qe8_A          162 QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADL  227 (343)
T ss_dssp             TTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHH
T ss_pred             cCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHh
Confidence            222111 00134455777777777888776553              2367899999999888887665 44444421  


Q ss_pred             -CCc-----eeE--EeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc-CCCcEEEEEEcCCCCEEEE
Q 004214          453 -DGS-----CLK--TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK-HEDKIWALAVGKKTEMFAT  523 (768)
Q Consensus       453 -~~~-----~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~s  523 (768)
                       .+.     ...  ...++......++++++|+.+++...++.|.+||..+++....... +...+.+++|.+++.++++
T Consensus       228 ~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~  307 (343)
T 2qe8_A          228 SNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFD  307 (343)
T ss_dssp             TCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEE
T ss_pred             cCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEE
Confidence             111     000  1123444556789999999999888899999999866764333322 2456889999999998888


Q ss_pred             EeCCCc
Q 004214          524 GGSDAL  529 (768)
Q Consensus       524 ~~~dg~  529 (768)
                      .+..+.
T Consensus       308 ~~~~~~  313 (343)
T 2qe8_A          308 CNQLHH  313 (343)
T ss_dssp             ECCGGG
T ss_pred             eCcccc
Confidence            775443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.13  E-value=2.1e-08  Score=100.77  Aligned_cols=226  Identities=11%  Similarity=0.032  Sum_probs=146.9

Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214          241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV  320 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  320 (768)
                      ......|.+.+..++++...++.|..|+. ++. ...+..+...+.++.  +.+++. ++++...++.|.+|+.. ++..
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~--~d~dG~-l~v~~~~~~~v~~~~~~-g~~~  119 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNA--VDAQQR-LVHCEHGRRAITRSDAD-GQAH  119 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEE--ECTTSC-EEEEETTTTEEEEECTT-SCEE
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceee--ECCCCC-EEEEECCCCEEEEECCC-CCEE
Confidence            45567787655557788888899999998 444 334444556677775  556655 35555556889999986 5433


Q ss_pred             Eeeecc----cCcEEEEEEecCCCcEEEE----EeC-------------CCeEEEEeCCCCCCCCccccccceeeEeecc
Q 004214          321 GVGTGH----MGAVGAVAFSKKLQNFLVS----GSS-------------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH  379 (768)
Q Consensus       321 ~~~~~~----~~~v~~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  379 (768)
                      ......    ...+..+++.|+|. ++++    |..             .+.|..||...+.          .... . .
T Consensus       120 ~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~----------~~~~-~-~  186 (305)
T 3dr2_A          120 LLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP----------LQRM-A-D  186 (305)
T ss_dssp             EEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC----------CEEE-E-E
T ss_pred             EEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCc----------EEEE-e-c
Confidence            222111    13456799999976 5554    321             2456666654321          1111 1 3


Q ss_pred             CCCeEEEEEccCCCEEEEEeCC------CcEEEEeCCCCceE--EEE-eccCCCeEEEEEccCCCEEEEeeCCCcEEEEe
Q 004214          380 GKDINSLAVAPNDSLVCTGSQD------RTACVWRLPDLVSV--VTF-RGHKRGIWSVEFSPVDQVVITASGDKTIKIWS  450 (768)
Q Consensus       380 ~~~i~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~--~~~-~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd  450 (768)
                      ....+.++|+|+++.|+++...      +.|.+|++......  ..+ .........++++++|++.++ ..+ .|.+|+
T Consensus       187 ~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~  264 (305)
T 3dr2_A          187 LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFD  264 (305)
T ss_dssp             ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEEC
T ss_pred             CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEEC
Confidence            3456889999999988877665      68999998755411  111 112334567899999995544 454 499999


Q ss_pred             CCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEE
Q 004214          451 ISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVK  489 (768)
Q Consensus       451 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  489 (768)
                      . +++.+..+..+. .+..++|+++++.|+.++.++..+
T Consensus       265 ~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          265 S-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             T-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             C-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            8 688888887555 588899999999888888765433

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.12  E-value=6.7e-08  Score=98.40  Aligned_cols=220  Identities=10%  Similarity=0.069  Sum_probs=149.9

Q ss_pred             cCCCEEEEEEeCCCeEEEEeCCCc----eEEEeee-------cccCcEEEEEEecCCCcEEEEEeCC------CeEEEEe
Q 004214          294 SSGKILIVTGSKDNSVRLWDSESR----CCVGVGT-------GHMGAVGAVAFSKKLQNFLVSGSSD------HTIKVWS  356 (768)
Q Consensus       294 ~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd  356 (768)
                      .+.+.+++.|..++.|+++|+.+.    +...++.       .....-..+.+.|+|  +++++..+      |.|.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence            567777888889999999999755    5666552       111244567888997  66666655      7899999


Q ss_pred             CCCCCCCCccccccceeeEeec--cC-CCeEEEEEccCCCEEEEEe-------------------CCCcEEEEeCCCCce
Q 004214          357 FDGLSDDAEQPMNLKAKAVVAA--HG-KDINSLAVAPNDSLVCTGS-------------------QDRTACVWRLPDLVS  414 (768)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~--~~-~~i~~~~~s~~~~~l~~~~-------------------~dg~i~i~d~~~~~~  414 (768)
                      ..+..          .......  .. .--..+.|+|+++.+++..                   .+.+|.+||+.+++.
T Consensus       171 ~~T~~----------v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~  240 (462)
T 2ece_A          171 HYSFE----------PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR  240 (462)
T ss_dssp             TTTCC----------EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE
T ss_pred             CCCCe----------EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE
Confidence            87542          2222211  11 1233578899999888874                   368999999999888


Q ss_pred             EEEEecc--CCCeEEEEE--ccCCCEEEEee------CCCcEEEEeCCCCce--eEEe--ecC----------------C
Q 004214          415 VVTFRGH--KRGIWSVEF--SPVDQVVITAS------GDKTIKIWSISDGSC--LKTF--EGH----------------T  464 (768)
Q Consensus       415 ~~~~~~~--~~~v~~v~~--s~~~~~l~t~~------~d~~i~iwd~~~~~~--~~~~--~~~----------------~  464 (768)
                      +.++..-  ......+.|  +|+++++++++      .+++|.+|....+..  .+.+  ...                .
T Consensus       241 ~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~  320 (462)
T 2ece_A          241 IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVP  320 (462)
T ss_dssp             EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEEC
T ss_pred             eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCC
Confidence            8877652  123445655  99999888877      466888776654421  1111  110                2


Q ss_pred             CcEEEEEEEeCCCEEEEEeC-CCcEEEEECC---CCeEEEEeccCC--------------CcEEEEEEcCCCCEEEEEe
Q 004214          465 SSVLRASFLTRGAQIVSCGA-DGLVKLWTVR---TGECIATYDKHE--------------DKIWALAVGKKTEMFATGG  525 (768)
Q Consensus       465 ~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~---~~~~~~~~~~~~--------------~~v~~l~~s~~~~~l~s~~  525 (768)
                      .....+.+++||++|.++.. .+.|.+||+.   +.+.+..+....              +....++++|||++|+++.
T Consensus       321 ~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          321 PLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            34678999999999987776 6799999985   335565554220              1246799999999999888

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.10  E-value=3e-11  Score=124.97  Aligned_cols=205  Identities=10%  Similarity=0.049  Sum_probs=115.3

Q ss_pred             CCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceee
Q 004214          295 SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA  374 (768)
Q Consensus       295 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  374 (768)
                      .++. +++++.||.|+.||..+|+.+..+..  +.+.+..+..++. ++++++.||.|..||..++............  
T Consensus         8 ~~~~-v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~--   81 (369)
T 2hz6_A            8 PETL-LFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE--   81 (369)
T ss_dssp             CTTE-EEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHH--
T ss_pred             eCCE-EEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcc--
Confidence            3454 88899999999999999999888776  4444444555544 5677789999999998755321111000000  


Q ss_pred             EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCC
Q 004214          375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG  454 (768)
Q Consensus       375 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~  454 (768)
                        .....++    +. .+..+++++.|+.++.||..+++.+..+..+.    ...++|++..+++++.|+.|+.||..+|
T Consensus        82 --~~~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG  150 (369)
T 2hz6_A           82 --LVQASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTR  150 (369)
T ss_dssp             --HHTTCSC----C------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSS
T ss_pred             --ccccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCC
Confidence              0001111    11 34567788889999999999999888776543    2456678889999999999999999999


Q ss_pred             ceeEEeecCCCcEEEEEEEeCC---CEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEE-EEEcCCCC
Q 004214          455 SCLKTFEGHTSSVLRASFLTRG---AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA-LAVGKKTE  519 (768)
Q Consensus       455 ~~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~s~~~~  519 (768)
                      +.+..+..+.  .....+.++.   ..+++++.||.|+.||..+|+.+..+. ...++.. ..++++|.
T Consensus       151 ~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          151 ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVAFYVWQREGL  216 (369)
T ss_dssp             SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEEEEECTTSSC
T ss_pred             CEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEEEEEecCCce
Confidence            9887765321  1122333332   567788899999999999999988876 4445543 34444553

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.10  E-value=9.1e-13  Score=136.37  Aligned_cols=257  Identities=14%  Similarity=0.043  Sum_probs=146.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCc-
Q 004214          251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA-  329 (768)
Q Consensus       251 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-  329 (768)
                      ++..+++++.++.|+.||..+++....+..  ..+.+..  ...++. ++++++.||.|+.||..+++.+.....+... 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p--~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~   82 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVP--THVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL   82 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-------C-CEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecc--eEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence            567899999999999999999999888776  3343332  333443 3777789999999999888776555433211 


Q ss_pred             EE-EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 004214          330 VG-AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR  408 (768)
Q Consensus       330 v~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d  408 (768)
                      +. +..+..+ . .+++++.++.+..||..++...          .....+.    ...++|++..+++++.|+.|+.||
T Consensus        83 ~~~sp~~~~~-~-~v~~g~~dg~v~a~D~~tG~~~----------w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d  146 (369)
T 2hz6_A           83 VQASPCRSSD-G-ILYMGKKQDIWYVIDLLTGEKQ----------QTLSSAF----ADSLSPSTSLLYLGRTEYTITMYD  146 (369)
T ss_dssp             HTTCSCC-------CCCCEEEEEEEEECCC------------------------------------EEEEEEEEEEECCC
T ss_pred             cccCceEecC-C-EEEEEeCCCEEEEEECCCCcEE----------EEecCCC----cccccccCCEEEEEecCCEEEEEE
Confidence            10 0011122 2 5778888999999999865321          1111111    234567888999999999999999


Q ss_pred             CCCCceEEEEeccCCCeEEEEEccCC---CEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEE-EEEEeCCCEEEE--E
Q 004214          409 LPDLVSVVTFRGHKRGIWSVEFSPVD---QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLR-ASFLTRGAQIVS--C  482 (768)
Q Consensus       409 ~~~~~~~~~~~~~~~~v~~v~~s~~~---~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s--~  482 (768)
                      ..+++.+..+..+.  ....+++++.   ..+++++.||.|+.||..+|+.+.++. ...++.. ..++++|...+.  .
T Consensus       147 ~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~~~v~~~~  223 (369)
T 2hz6_A          147 TKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVAFYVWQREGLRKVMHIN  223 (369)
T ss_dssp             SSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEEEEECTTSSCEEECCEE
T ss_pred             CCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEEEEEecCCceEecccee
Confidence            99998776654321  1223334332   557778899999999999999988877 3444433 333445542110  0


Q ss_pred             eCCCcEEEEECCCCe----EEEEeccCCCcEEEEEEcC--CCCEEEEEeCCCcEEEEEcC
Q 004214          483 GADGLVKLWTVRTGE----CIATYDKHEDKIWALAVGK--KTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       483 ~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~--~~~~l~s~~~dg~v~vw~~~  536 (768)
                      ..++.++.+|..+|+    .+..+.. .+.+.    +|  .+..|+.++.||.|+.++..
T Consensus       224 ~~~~~l~~ld~~tG~~~~~~~W~~~~-~~~~~----sp~~~~g~lyv~~~~G~l~al~~~  278 (369)
T 2hz6_A          224 VAVETLRYLTFMSGEVGRITKWKYPF-PKETE----AKSKLTPTLYVGKYSTSLYASPSM  278 (369)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHTSCCCC-CCHHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred             ecccceeeeehhcCCcccceeeeecc-Ccccc----ccccccceEEEecccCCEEecCcc
Confidence            113456667776666    4444431 11221    22  34578888889999888765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.07  E-value=1.4e-08  Score=107.31  Aligned_cols=230  Identities=11%  Similarity=0.083  Sum_probs=155.2

Q ss_pred             CCCEEEEEEeCCCeEEEEeCCCceEEEeeecc-cCcEEEEEE-e-cCCCcEEEEEe------------------CCCeEE
Q 004214          295 SGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVGAVAF-S-KKLQNFLVSGS------------------SDHTIK  353 (768)
Q Consensus       295 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~~l~s~~------------------~dg~i~  353 (768)
                      +++.++++...++.|.+.|+.+.++...+.-. ......+++ + |+++ ++++++                  .++.+.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCc-EEEEecccccccCCCCcccccccccCceEE
Confidence            56666666666778999999999988755432 345778887 4 8877 555553                  345788


Q ss_pred             EEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC-------------------------------
Q 004214          354 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-------------------------------  402 (768)
Q Consensus       354 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-------------------------------  402 (768)
                      +.|....          +.......-. ....++++|+|+++++.+.+.                               
T Consensus       179 vID~~t~----------~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~  247 (595)
T 1fwx_A          179 AVDADKW----------EVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA  247 (595)
T ss_dssp             EEETTTT----------EEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred             EEECCCC----------eEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence            8888732          2222222212 346688999999999988653                               


Q ss_pred             -------cEEEEeCCC--Cce-EEEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCc------------eeEE
Q 004214          403 -------TACVWRLPD--LVS-VVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGS------------CLKT  459 (768)
Q Consensus       403 -------~i~i~d~~~--~~~-~~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~------------~~~~  459 (768)
                             .|.+.|..+  ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+            ....
T Consensus       248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~  326 (595)
T 1fwx_A          248 GDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  326 (595)
T ss_dssp             TCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred             CCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence                   466667666  434 444432 33567899999999777665 67899999998653            2333


Q ss_pred             eecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC----------CeEEEEeccCCCcE-E----EEEEcCCCCEEEEE
Q 004214          460 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT----------GECIATYDKHEDKI-W----ALAVGKKTEMFATG  524 (768)
Q Consensus       460 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v-~----~l~~s~~~~~l~s~  524 (768)
                      .. -......++|+++|...++...|++|.+||+.+          .+.+.++..|..+- .    ++.++|||++|+++
T Consensus       327 v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~  405 (595)
T 1fwx_A          327 PE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL  405 (595)
T ss_dssp             CB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred             cC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEc
Confidence            33 334577899999993334555699999999987          67788887775542 1    22458999999987


Q ss_pred             eC---CCcE----------EEEEcCCH
Q 004214          525 GS---DALV----------NLWHDSTA  538 (768)
Q Consensus       525 ~~---dg~v----------~vw~~~~~  538 (768)
                      ..   |..+          .++++..+
T Consensus       406 Nk~skdr~~~~gp~~~~~~ql~dis~~  432 (595)
T 1fwx_A          406 SKFSKDRFLNVGPLKPENDQLIDISGD  432 (595)
T ss_dssp             ESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred             CCCCccccccCCCCCCCcceEEEcCCC
Confidence            63   4432          77887543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.03  E-value=6.6e-05  Score=82.40  Aligned_cols=477  Identities=12%  Similarity=0.064  Sum_probs=250.3

Q ss_pred             cCCCcEEEEECCCCE-EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCee-EEEecCccceeEEEEEcC
Q 004214            7 GADRKVLVWDVDGGF-CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC-VATLDKHFSRVTSMAITS   84 (768)
Q Consensus         7 ~~dg~i~vwd~~~~~-~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~-~~~l~~h~~~V~~l~fs~   84 (768)
                      .....|++.|+.... ....+...-..+..|+|++.+.. +.++-...+.|..+++..... ...+...-.....|++.+
T Consensus        15 ~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~   93 (619)
T 3s94_A           15 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW   93 (619)
T ss_dssp             ECSSBEEEECCC---------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEET
T ss_pred             eccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEe
Confidence            357889999997653 22233334556889999997665 334445567899999865532 233333335688999999


Q ss_pred             CCCEEEEE-eCCCeEEEEECCCCeeeeee-ecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEe-eCCcE
Q 004214           85 DGSTLISA-GRDKVVNLWDLRDYSCKLTV-PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITV-GERGI  161 (768)
Q Consensus        85 d~~~L~s~-~~dg~i~vWd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~  161 (768)
                      .+..|+.+ ...+.|.+.++........+ .....+..+++.|.+..                      .+++- +..+.
T Consensus        94 ~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~----------------------ly~tD~g~~~~  151 (619)
T 3s94_A           94 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGF----------------------MYWTDWGEVPK  151 (619)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTE----------------------EEEEECSSSCE
T ss_pred             cCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCe----------------------EEEeccCCCCE
Confidence            66665554 45689999998765432222 22233555666554321                      22222 33455


Q ss_pred             EEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEe-cCeEEEEeeccCcccceeeEEEeeecccCC
Q 004214          162 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA-DQQLLLYTTVEVPEKKMELILSKRLVGYNE  240 (768)
Q Consensus       162 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (768)
                      |...++++........          ........+++.+.+..++.+.. .+.|..++........    ...   +...
T Consensus       152 I~r~~~dG~~~~~l~~----------~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~----~~~---~~~~  214 (619)
T 3s94_A          152 IERAGMDGSSRFIIIN----------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA----VVK---GSLP  214 (619)
T ss_dssp             EEEEETTSCSCEEEEC----------SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------------
T ss_pred             EEEEECCCCceEEEEe----------CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE----EEe---CCCC
Confidence            6655655442111100          11234567788887777766653 4567666665422111    001   1111


Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeC-----------Cc--c------------c--eEEEe----
Q 004214          241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG-----------HS--E------------I--VLCLD----  289 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-----------~~--~------------~--v~~l~----  289 (768)
                      ....+++.  .+..+.+-...+.|...|..+++....+..           |.  .            .  -.|+.    
T Consensus       215 ~P~gi~~~--~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~  292 (619)
T 3s94_A          215 HPFALTLF--EDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVK  292 (619)
T ss_dssp             -CCCEEES--SSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSST
T ss_pred             CceEEEEe--CCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCC
Confidence            22345553  223444444567788888766543322111           00  0            0  01110    


Q ss_pred             ---eeeecC--------------CCEEEEEEeCCCeEEEEeCCCceE--EEeeecccCcEEEEEEecCCCcEEEEEeCCC
Q 004214          290 ---TCALSS--------------GKILIVTGSKDNSVRLWDSESRCC--VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH  350 (768)
Q Consensus       290 ---~~~~~~--------------~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg  350 (768)
                         .|..+.              ...+|+.+. .+.|+..++.....  +......-..+.+++|.+.+..++++-...+
T Consensus       293 ~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~  371 (619)
T 3s94_A          293 PFYQCACPTGVKLLENGKTCKDGATELLLLAR-RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVR  371 (619)
T ss_dssp             TSEEEECCTTCCBCTTSSCBCSSCSEEEEEEE-SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTT
T ss_pred             CCceEeCCchheecccCcccCCCCceEEEEEc-ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCC
Confidence               000011              122233332 34666666654421  1111112345778999987666666666788


Q ss_pred             eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEE
Q 004214          351 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVE  429 (768)
Q Consensus       351 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~  429 (768)
                      .|..+++....          ........-..+..+++++. +++.++-+..+.|.+.++........+...-.....++
T Consensus       372 ~I~r~~~~g~~----------~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~ia  441 (619)
T 3s94_A          372 AIRRSFIDGSG----------SQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIV  441 (619)
T ss_dssp             EEEEEETTSCS----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEE
T ss_pred             eEEEEEcCCCc----------cEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEE
Confidence            89989886431          11112222245678999974 55555555678899999875543333333445678999


Q ss_pred             EccCCCEEEEee-C-CCcEEEEeCCCCceeEEe-ecCCCcEEEEEEEeCCCEEEEEeC-CCcEEEEECCCCeEEEEeccC
Q 004214          430 FSPVDQVVITAS-G-DKTIKIWSISDGSCLKTF-EGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYDKH  505 (768)
Q Consensus       430 ~s~~~~~l~t~~-~-d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~  505 (768)
                      +.|....|+.+. . .+.|...++. |.....+ ...-...+.+++.+++..|+.+.. .+.|..+++........+...
T Consensus       442 vdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~  520 (619)
T 3s94_A          442 LDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDK  520 (619)
T ss_dssp             EETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECC
T ss_pred             EEcCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccC
Confidence            999744444433 2 3667777764 4433333 334567789999998878877765 467888887543322212111


Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          506 EDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       506 ~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      -....+|++..+ ...++-...+.|..-+..++
T Consensus       521 l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g  552 (619)
T 3s94_A          521 IPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSA  552 (619)
T ss_dssp             CCSSCCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred             CCCcEEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence            122234555433 33444444555666665554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.01  E-value=1.3e-07  Score=105.65  Aligned_cols=257  Identities=11%  Similarity=0.075  Sum_probs=163.4

Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeeCCcc----ceEEEeeeeecCCCEEEEEEeC------CCeEEEEeCCCceEEEe
Q 004214          253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSE----IVLCLDTCALSSGKILIVTGSK------DNSVRLWDSESRCCVGV  322 (768)
Q Consensus       253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~v~~l~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~  322 (768)
                      ..+++++.++.|..+|..+++.+........    .+.+.   ..-.++. ++++..      +|.|..+|..+++.+..
T Consensus       118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~---P~v~~~~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  193 (668)
T 1kv9_A          118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGA---PRVVKGK-VIIGNGGAEYGVRGFVSAYDADTGKLAWR  193 (668)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSC---CEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCC---CEEECCE-EEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence            4677788889999999999998877654211    11110   0011344 444433      58999999999998877


Q ss_pred             eeccc---C----------------------------cEEEEEEecCCCcEEEEEeCCC-------------------eE
Q 004214          323 GTGHM---G----------------------------AVGAVAFSKKLQNFLVSGSSDH-------------------TI  352 (768)
Q Consensus       323 ~~~~~---~----------------------------~v~~~~~~~~~~~~l~s~~~dg-------------------~i  352 (768)
                      +....   .                            ....+++.|... +++.++.++                   .|
T Consensus       194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v  272 (668)
T 1kv9_A          194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSI  272 (668)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence            65210   0                            112367777755 677777665                   38


Q ss_pred             EEEeCCCCCCCCccccccceeeEeec--cC-------CCeEEEEEccCCC---EEEEEeCCCcEEEEeCCCCceEEEEec
Q 004214          353 KVWSFDGLSDDAEQPMNLKAKAVVAA--HG-------KDINSLAVAPNDS---LVCTGSQDRTACVWRLPDLVSVVTFRG  420 (768)
Q Consensus       353 ~iwd~~~~~~~~~~~~~~~~~~~~~~--~~-------~~i~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~  420 (768)
                      ..+|..++.          .......  |.       .+.....+..+|+   .+++++.+|.++++|..+++.+.....
T Consensus       273 ~AlD~~tG~----------~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~  342 (668)
T 1kv9_A          273 LAIRPDTGK----------LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKF  342 (668)
T ss_dssp             EEECTTTCC----------EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred             EEEcCCCCc----------eeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccc
Confidence            888887553          2222211  11       2223333334665   688999999999999999998754432


Q ss_pred             cC------------CCe------------------------EEEEEccCCCEEEEe------------------------
Q 004214          421 HK------------RGI------------------------WSVEFSPVDQVVITA------------------------  440 (768)
Q Consensus       421 ~~------------~~v------------------------~~v~~s~~~~~l~t~------------------------  440 (768)
                      ..            .++                        ..++++|+..+++..                        
T Consensus       343 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g  422 (668)
T 1kv9_A          343 GKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTA  422 (668)
T ss_dssp             SCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCS
T ss_pred             cccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccC
Confidence            11            000                        126788877666541                        


Q ss_pred             ------------eCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCc
Q 004214          441 ------------SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK  508 (768)
Q Consensus       441 ------------~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  508 (768)
                                  ..+|.|.-||+.+|+.+.+...+ .+.....+...+.+++.++.||.|+.||.++|+.+..+....+.
T Consensus       423 ~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~  501 (668)
T 1kv9_A          423 AGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGI  501 (668)
T ss_dssp             SCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             ccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCc
Confidence                        13488999999999998877643 33334456677889999999999999999999999988754321


Q ss_pred             E-EEEEEcCCCC-EEEEEe
Q 004214          509 I-WALAVGKKTE-MFATGG  525 (768)
Q Consensus       509 v-~~l~~s~~~~-~l~s~~  525 (768)
                      . .-+.+..+|+ +++.++
T Consensus       502 ~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          502 VAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             CSCCEEEEETTEEEEEEEE
T ss_pred             ccCceEEEECCEEEEEEEe
Confidence            1 1233344666 444444

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.97  E-value=3.2e-06  Score=82.80  Aligned_cols=223  Identities=10%  Similarity=0.020  Sum_probs=143.9

Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214          241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV  320 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  320 (768)
                      .+..+++.+.++.++++-...+.|..++.........+........+++  +.+.++.++++....+.|.+++.......
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia--~d~~~~~lyv~d~~~~~I~~~~~~g~~~~  114 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIA--LDHLGRTIFWTDSQLDRIEVAKMDGTQRR  114 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEE--EETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEE--EEecCCeEEEEECCCCEEEEEEcCCCCEE
Confidence            4578888876666666666788999999987654433433334556665  66667776677777889999998754332


Q ss_pred             EeeecccCcEEEEEEecCCCcEEEEEeC--CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE
Q 004214          321 GVGTGHMGAVGAVAFSKKLQNFLVSGSS--DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG  398 (768)
Q Consensus       321 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  398 (768)
                      ............++++|++..++++...  .+.|..++++....          .............++++|++..|..+
T Consensus       115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~----------~~~~~~~~~~P~gia~d~~~~~lyv~  184 (267)
T 1npe_A          115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR----------RILAQDNLGLPNGLTFDAFSSQLCWV  184 (267)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC----------EEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred             EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc----------EEEEECCCCCCcEEEEcCCCCEEEEE
Confidence            2222222456899999976655555443  46888888764210          11111223457899999987666554


Q ss_pred             e-CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC-CcEEEEEEEeCC
Q 004214          399 S-QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-SSVLRASFLTRG  476 (768)
Q Consensus       399 ~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~  476 (768)
                      . ..+.|.++++........+.+ ......++.. .+.++++....+.|.++|..+++.+.++.... .....+++.|++
T Consensus       185 d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          185 DAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             ETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             ECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence            4 567899999876544333332 2334566654 34455555566899999999999988886433 246678888876


Q ss_pred             C
Q 004214          477 A  477 (768)
Q Consensus       477 ~  477 (768)
                      .
T Consensus       263 ~  263 (267)
T 1npe_A          263 C  263 (267)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.94  E-value=8.9e-08  Score=106.87  Aligned_cols=280  Identities=10%  Similarity=0.041  Sum_probs=178.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCceeeeeeeCCccce-----------EEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214          252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV-----------LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV  320 (768)
Q Consensus       252 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v-----------~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  320 (768)
                      +..+++++.++.|.-+|..+++.+..+.......           ..+.  .  .++. ++.++.|+.|..+|..+++.+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~-v~v~~~dg~l~alD~~tG~~~  140 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVA--L--WGDK-VYVGTLDGRLIALDAKTGKAI  140 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCE--E--EBTE-EEEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceE--E--ECCE-EEEEcCCCEEEEEECCCCCEe
Confidence            4567777888999999999999887765432210           0111  1  2344 778889999999999999988


Q ss_pred             Eeeeccc----CcEEE-EEEecCCCcEEEEEeC------CCeEEEEeCCCCCCCCccccc-ccee---------------
Q 004214          321 GVGTGHM----GAVGA-VAFSKKLQNFLVSGSS------DHTIKVWSFDGLSDDAEQPMN-LKAK---------------  373 (768)
Q Consensus       321 ~~~~~~~----~~v~~-~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~-~~~~---------------  373 (768)
                      ..+....    ..+.+ ..+. + . .+++++.      +|.|..+|..++...-..... ....               
T Consensus       141 W~~~~~~~~~~~~~~~~P~v~-~-~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  217 (668)
T 1kv9_A          141 WSQQTTDPAKPYSITGAPRVV-K-G-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTW  217 (668)
T ss_dssp             EEEECSCTTSSCBCCSCCEEE-T-T-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTC
T ss_pred             eeeccCCCCCcceecCCCEEE-C-C-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccC
Confidence            7765421    11111 1111 2 2 3555443      588999998766421110000 0000               


Q ss_pred             -----eEeeccCCCeEEEEEccCCCEEEEEeCCCc-------------------EEEEeCCCCceEEEEec--cC-----
Q 004214          374 -----AVVAAHGKDINSLAVAPNDSLVCTGSQDRT-------------------ACVWRLPDLVSVVTFRG--HK-----  422 (768)
Q Consensus       374 -----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~--~~-----  422 (768)
                           .....+......++++|.+.+++.++.++.                   |..+|..+++.+..++.  |.     
T Consensus       218 ~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~  297 (668)
T 1kv9_A          218 QGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFT  297 (668)
T ss_dssp             CSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred             CccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccccc
Confidence                 000011222345789998889988887763                   99999999999888774  21     


Q ss_pred             --CCeEEEEEccCCC---EEEEeeCCCcEEEEeCCCCceeEEeecCCC------------cE------------------
Q 004214          423 --RGIWSVEFSPVDQ---VVITASGDKTIKIWSISDGSCLKTFEGHTS------------SV------------------  467 (768)
Q Consensus       423 --~~v~~v~~s~~~~---~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~------------~v------------------  467 (768)
                        .+.....+..+|+   .++.++.+|.++++|..+|+.+........            ++                  
T Consensus       298 ~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~  377 (668)
T 1kv9_A          298 ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP  377 (668)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred             CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence              2333333444665   788999999999999999998854432110            00                  


Q ss_pred             ------EEEEEEeCCCEEEEE------------------------------------eCCCcEEEEECCCCeEEEEeccC
Q 004214          468 ------LRASFLTRGAQIVSC------------------------------------GADGLVKLWTVRTGECIATYDKH  505 (768)
Q Consensus       468 ------~~~~~s~~~~~l~s~------------------------------------~~dg~i~iwd~~~~~~~~~~~~~  505 (768)
                            ..++++|+...++..                                    ..+|.|..||+.+|+.+.+...+
T Consensus       378 ~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~  457 (668)
T 1kv9_A          378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP  457 (668)
T ss_dssp             TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES
T ss_pred             ccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC
Confidence                  015677776665541                                    12478999999999998887633


Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214          506 EDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE  540 (768)
Q Consensus       506 ~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~  540 (768)
                       .+.....+...+.++++++.||.|+.||..+++.
T Consensus       458 -~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~  491 (668)
T 1kv9_A          458 -THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA  491 (668)
T ss_dssp             -SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             -CCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence             3333334455788899999999999999887754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.94  E-value=1.4e-06  Score=88.71  Aligned_cols=218  Identities=10%  Similarity=0.048  Sum_probs=138.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCc----eeeeeee------C-CccceEEEeeeeecCCCEEEEEEeCC------CeEEEEe
Q 004214          251 EEQYLAVATNIEQVQVYDLSSM----SCSYVLA------G-HSEIVLCLDTCALSSGKILIVTGSKD------NSVRLWD  313 (768)
Q Consensus       251 ~~~~l~~~~~~~~i~i~d~~~~----~~~~~~~------~-~~~~v~~l~~~~~~~~~~~l~~~~~d------g~i~iwd  313 (768)
                      ...+++.+..++.|+++|+.+.    +...++.      . .......+.  ..+++  +++++..+      |.|.++|
T Consensus        95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~--~~pdG--i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVH--CGPDA--IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEE--ECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred             CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCccccee--ECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence            3344555667899999998755    4555552      0 111222232  44555  45565554      7899999


Q ss_pred             CCCceEEEeeecccCc---EEEEEEecCCCcEEEEEe-------------------CCCeEEEEeCCCCCCCCccccccc
Q 004214          314 SESRCCVGVGTGHMGA---VGAVAFSKKLQNFLVSGS-------------------SDHTIKVWSFDGLSDDAEQPMNLK  371 (768)
Q Consensus       314 ~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~~~~~~~  371 (768)
                      ..+++.+..+.....+   -..+.|+|+++ .+++..                   ...+|.+||+...          +
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~----------k  239 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR----------K  239 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT----------E
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCC----------c
Confidence            9999999887633222   33577899976 666664                   3789999999843          1


Q ss_pred             eeeEeec--cCCCeEEEEE--ccCCCEEEEEe------CCCcEEEEeCCCCce--EEEE--ecc----------------
Q 004214          372 AKAVVAA--HGKDINSLAV--APNDSLVCTGS------QDRTACVWRLPDLVS--VVTF--RGH----------------  421 (768)
Q Consensus       372 ~~~~~~~--~~~~i~~~~~--s~~~~~l~~~~------~dg~i~i~d~~~~~~--~~~~--~~~----------------  421 (768)
                      ....+..  .......+.|  +|+++++.+++      .+++|.+|....+..  ...+  ...                
T Consensus       240 ~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~  319 (462)
T 2ece_A          240 RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV  319 (462)
T ss_dssp             EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred             EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence            2222221  1123445555  99999888877      456887776554421  1111  110                


Q ss_pred             CCCeEEEEEccCCCEEEEeeC-CCcEEEEeCCCC---ceeEEeecCC--------------CcEEEEEEEeCCCEEEEEe
Q 004214          422 KRGIWSVEFSPVDQVVITASG-DKTIKIWSISDG---SCLKTFEGHT--------------SSVLRASFLTRGAQIVSCG  483 (768)
Q Consensus       422 ~~~v~~v~~s~~~~~l~t~~~-d~~i~iwd~~~~---~~~~~~~~~~--------------~~v~~~~~s~~~~~l~s~~  483 (768)
                      ......+.+||||++|.++.. .+.|.+||+.+.   +.+..+....              +....+.++|||++|+++.
T Consensus       320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            234788999999999888765 689999998633   4455544210              1357799999999999887

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.92  E-value=0.00017  Score=79.23  Aligned_cols=429  Identities=11%  Similarity=0.066  Sum_probs=221.1

Q ss_pred             EeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEc
Q 004214            4 LLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAIT   83 (768)
Q Consensus         4 atg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs   83 (768)
                      ++-...+.|.+.+..+......+.+.-.....|++.|.+...++.-.+..+.|...++............-.....|+++
T Consensus       100 ~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald  179 (619)
T 3s94_A          100 WTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLD  179 (619)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEE
T ss_pred             EEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEE
Confidence            33455677778777665433333345556778999997555222222335677777775433333333334567899999


Q ss_pred             CCCCEEEEEe-CCCeEEEEECCCCeeeeeee-cceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcE
Q 004214           84 SDGSTLISAG-RDKVVNLWDLRDYSCKLTVP-TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI  161 (768)
Q Consensus        84 ~d~~~L~s~~-~dg~i~vWd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  161 (768)
                      +++..|+.+. ..+.|...|+.......... ....+..+++..+                        ..+++-...+.
T Consensus       180 ~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~------------------------~ly~td~~~~~  235 (619)
T 3s94_A          180 YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED------------------------ILYWTDWSTHS  235 (619)
T ss_dssp             TTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS------------------------EEEEECTTTCS
T ss_pred             ccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC------------------------EEEEecCCCCE
Confidence            9877776664 45678888886543322211 0111122222211                        13444445566


Q ss_pred             EEEEEcCCceeeeecCCc----eeecc--cccCc---------ccceeEEE-EccCCCceEEEEecCeEEEEeeccCccc
Q 004214          162 VRMWNADSACLYEQKSSD----VTISF--EMDDS---------KRGFTAAT-VLPSNQGLLCVTADQQLLLYTTVEVPEK  225 (768)
Q Consensus       162 i~iwd~~~~~~~~~~~~~----~~~~~--~~~~~---------~~~~~~~~-~~~~~~~l~~~~~dg~i~~~~~~~~~~~  225 (768)
                      |...|..++.........    .....  ....+         ..+...++ ..|.....-|....|...          
T Consensus       236 V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l----------  305 (619)
T 3s94_A          236 ILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKL----------  305 (619)
T ss_dssp             EEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCB----------
T ss_pred             EEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchhee----------
Confidence            777776665221110000    00000  00000         00000001 111111111111111100          


Q ss_pred             ceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeee-eee-CCccceEEEeeeeecCCCEEEEEE
Q 004214          226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY-VLA-GHSEIVLCLDTCALSSGKILIVTG  303 (768)
Q Consensus       226 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-~~~-~~~~~v~~l~~~~~~~~~~~l~~~  303 (768)
                                  ..+...|.   .....+|+.+.. +.|+..++....... .+. ..-..+.+++  +.+.++.++++-
T Consensus       306 ------------~~d~~~C~---~~~~~~Ll~~~~-~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld--~d~~~~~ly~sD  367 (619)
T 3s94_A          306 ------------LENGKTCK---DGATELLLLARR-TDLRRISLDTPDFTDIVLQLEDIRHAIAID--YDPVEGYIYWTD  367 (619)
T ss_dssp             ------------CTTSSCBC---SSCSEEEEEEES-SCEEEEESSSTTCCCEECCCSCCSSEEEEE--EETTTTEEEEEE
T ss_pred             ------------cccCcccC---CCCceEEEEEcc-cceEEEecCCCccceeEEeccccCccEEEE--EEcCCCeEEEEe
Confidence                        00001111   112345555554 678888887654321 121 1223456666  667677766666


Q ss_pred             eCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCe
Q 004214          304 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI  383 (768)
Q Consensus       304 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i  383 (768)
                      ...+.|+.+++..................+++.+.+.++.++-+..+.|.+.++.+..          ........-...
T Consensus       368 ~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~----------~~~l~~~~l~~P  437 (619)
T 3s94_A          368 DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM----------RKILISEDLEEP  437 (619)
T ss_dssp             TTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS----------CEEEECTTCCSE
T ss_pred             CCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe----------EEEEEECCCCCe
Confidence            6788999999876544333433345567889987767777777788999999887431          111112234567


Q ss_pred             EEEEEccCCCEEEEEeC--CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCceeEEe
Q 004214          384 NSLAVAPNDSLVCTGSQ--DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSCLKTF  460 (768)
Q Consensus       384 ~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~~~~~~  460 (768)
                      .+++++|....|..+..  .+.|...++............-...+.+++++++..|+.+. ..+.|..+++.. ...+++
T Consensus       438 ~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG-~~~~~~  516 (619)
T 3s94_A          438 RAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDG-TGRRVL  516 (619)
T ss_dssp             EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEE
T ss_pred             eeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCC-CceEEE
Confidence            89999996445544443  35677777654333322333345678999998766666554 457798999854 333333


Q ss_pred             -ecCCCcEEEEEEEeCCCEEEEEeC-CCcEEEEECCCCe
Q 004214          461 -EGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGE  497 (768)
Q Consensus       461 -~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~  497 (768)
                       ...-.....++..  +.+|+.+.. .+.|...|..+|.
T Consensus       517 ~~~~l~~P~glav~--~~~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          517 VEDKIPHIFGFTLL--GDYVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             EECCCCSSCCEEEE--TTEEEEECTTSSCEEEEESSSCC
T ss_pred             eccCCCCcEEEEEE--CCEEEEeecCCCeEEEEEcCCCc
Confidence             2222222344543  335555543 5577777777774

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.88  E-value=0.00023  Score=78.20  Aligned_cols=439  Identities=10%  Similarity=0.041  Sum_probs=225.6

Q ss_pred             ecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCC
Q 004214            6 EGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD   85 (768)
Q Consensus         6 g~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d   85 (768)
                      -...+.|.+.+.........+...-.....|++.|.....+..--+..+.|...++........+. .-.....|+++++
T Consensus        98 D~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~  176 (628)
T 4a0p_A           98 DTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYA  176 (628)
T ss_dssp             ETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETT
T ss_pred             ECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccc
Confidence            344566777777654422223344556789999996555222222336778888875443332233 4456789999998


Q ss_pred             CCEEEEEe-CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEE
Q 004214           86 GSTLISAG-RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM  164 (768)
Q Consensus        86 ~~~L~s~~-~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i  164 (768)
                      +..|+.+. ..+.|...|+.................+++..+                        ..+++-...+.|..
T Consensus       177 ~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~------------------------~ly~tD~~~~~I~~  232 (628)
T 4a0p_A          177 KRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQD------------------------YIYWTDWSRRSIER  232 (628)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEETT------------------------EEEEEETTTTEEEE
T ss_pred             cCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEECC------------------------EEEEecCCCCEEEE
Confidence            77777665 457899999865433111111112223333221                        13344445566666


Q ss_pred             EEcCCcee---eeecCC-ceeecccccCcccceeEEEEccCCCceEEEEec-CeEEEEeeccCcccceeeEEEeeecccC
Q 004214          165 WNADSACL---YEQKSS-DVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD-QQLLLYTTVEVPEKKMELILSKRLVGYN  239 (768)
Q Consensus       165 wd~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~~~~~~~~~~~~~~~~~~~~~~~~~  239 (768)
                      .|..++..   +..... .................+.....+-.-+|.... +....-....             .....
T Consensus       233 ~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g-------------~~l~~  299 (628)
T 4a0p_A          233 ANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAH-------------YSLNA  299 (628)
T ss_dssp             EETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTT-------------CEECT
T ss_pred             EECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCC-------------cEecc
Confidence            66555411   110000 000000000000000000000000001222111 2211111000             00001


Q ss_pred             CceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee-eeeeeC-CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc
Q 004214          240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-SYVLAG-HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR  317 (768)
Q Consensus       240 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~-~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  317 (768)
                      +...|.    +...+++.+.. ..|+-+.+..... ...+.. .-..+..++  +.+.++.++++-...+.|+.++....
T Consensus       300 d~~~C~----~~~~~Ll~s~~-~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld--~d~~~~~iy~sD~~~~~I~r~~~~g~  372 (628)
T 4a0p_A          300 DNRTCS----APTTFLLFSQK-SAINRMVIDEQQSPDIILPIHSLRNVRAID--YDPLDKQLYWIDSRQNMIRKAQEDGS  372 (628)
T ss_dssp             TSSCEE----CCSSEEEEEET-TEEEEECCCTTCCCCEECCCTTCSCEEEEE--EETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             cCCcCc----cccceeeeecc-ceEEEEecccccCceEEEEehhcCCceEEE--EecCCCeEEEEecCcceEEEEEcCCC
Confidence            111121    12345555543 5666666543321 112221 224466776  77777776666666788998887654


Q ss_pred             eEEEeeec------ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-
Q 004214          318 CCVGVGTG------HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-  390 (768)
Q Consensus       318 ~~~~~~~~------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-  390 (768)
                      .....+..      ....+..+++...+.++.++-+..+.|.+.+++..          .............+++++.| 
T Consensus       373 ~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~----------~~~~l~~~~l~~Pr~iavdp~  442 (628)
T 4a0p_A          373 QGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGR----------SVGVVLKGEQDRPRAVVVNPE  442 (628)
T ss_dssp             SCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC----------EEEEEEECTTCCEEEEEEETT
T ss_pred             CceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCC----------eEEEEEeCCCCceeeEEEecC
Confidence            33333322      23467899999988877788888899999988632          01122223345689999999 


Q ss_pred             CCCEEEEEeCCC--cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCceeEEee-cCCCc
Q 004214          391 NDSLVCTGSQDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSCLKTFE-GHTSS  466 (768)
Q Consensus       391 ~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~-~~~~~  466 (768)
                      .|.++.+-....  .|...++............-...+.+++.+.++.|+.+. ..+.|..+++. |...+.+. .....
T Consensus       443 ~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~d-G~~r~~~~~~~~~~  521 (628)
T 4a0p_A          443 KGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLS-GANRIVLEDSNILQ  521 (628)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSC
T ss_pred             CCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCC-CCceEEEEcCCCCC
Confidence            555555543332  566666654333333333344678999999876666554 45789999984 55455554 33345


Q ss_pred             EEEEEEEeCCCEEEEEe-CCCcEEEEECCCCeEEEEe
Q 004214          467 VLRASFLTRGAQIVSCG-ADGLVKLWTVRTGECIATY  502 (768)
Q Consensus       467 v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~  502 (768)
                      ...++...  .+|+.+. ..+.|...|..+|+....+
T Consensus       522 P~glav~~--~~ly~tD~~~~~i~~~~k~~G~~~~~i  556 (628)
T 4a0p_A          522 PVGLTVFE--NWLYWIDKQQQMIEKIDMTGREGRTKV  556 (628)
T ss_dssp             EEEEEEET--TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred             cEEEEEEC--CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence            56676644  3454444 4567888887777644444

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.88  E-value=7.7e-07  Score=97.13  Aligned_cols=283  Identities=11%  Similarity=0.056  Sum_probs=171.9

Q ss_pred             CCEEEEEeC-CCcEEEEEC-CCceeeeeeeCCccc-e---EE---EeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe
Q 004214          252 EQYLAVATN-IEQVQVYDL-SSMSCSYVLAGHSEI-V---LC---LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV  322 (768)
Q Consensus       252 ~~~l~~~~~-~~~i~i~d~-~~~~~~~~~~~~~~~-v---~~---l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  322 (768)
                      +..+++++. ++.|.-+|. .+++.+......... +   .|   +.....-.++. ++.++.|+.+..+|..+++.+..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~~~dg~l~alD~~tG~~~W~  140 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQ-IVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTE-EEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCE-EEEEeCCCEEEEEECCCCCEEEE
Confidence            346667777 789999999 899988766432210 0   00   00000112444 77888899999999999998876


Q ss_pred             eecccC----cEE-EEEEecCCCcEEEEEeC------CCeEEEEeCCCCCCCCccccccceee-----------------
Q 004214          323 GTGHMG----AVG-AVAFSKKLQNFLVSGSS------DHTIKVWSFDGLSDDAEQPMNLKAKA-----------------  374 (768)
Q Consensus       323 ~~~~~~----~v~-~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------  374 (768)
                      ......    .+. +..+. + . .+++++.      ++.|..+|..++...-..........                 
T Consensus       141 ~~~~~~~~~~~~~~~P~v~-~-g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~  217 (571)
T 2ad6_A          141 VEVCDPKVGSTLTQAPFVA-K-D-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EECCCGGGTCBCCSCCEEE-T-T-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             ecCCCCCccceeccCCEEE-C-C-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence            543210    111 11111 2 2 4555554      78999999886642111000000000                 


Q ss_pred             -----------EeeccCCCeEEEEEccCCCEEEEEeCC----------------CcEEEEeCCCCceEEEEeccC-----
Q 004214          375 -----------VVAAHGKDINSLAVAPNDSLVCTGSQD----------------RTACVWRLPDLVSVVTFRGHK-----  422 (768)
Q Consensus       375 -----------~~~~~~~~i~~~~~s~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~-----  422 (768)
                                 ...........+++++....+..++.+                +.|..+|..+++.+..++...     
T Consensus       218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d  297 (571)
T 2ad6_A          218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence                       000000011245677776677776642                259999999999988776421     


Q ss_pred             -----CCeEEEEEccCCC---EEEEeeCCCcEEEEeCCCCceeEEeecCC-------------CcE--------------
Q 004214          423 -----RGIWSVEFSPVDQ---VVITASGDKTIKIWSISDGSCLKTFEGHT-------------SSV--------------  467 (768)
Q Consensus       423 -----~~v~~v~~s~~~~---~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~v--------------  467 (768)
                           .++ -+...++|+   .++.++.+|.++++|..+|+.+..+....             .++              
T Consensus       298 ~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~  376 (571)
T 2ad6_A          298 FAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGT  376 (571)
T ss_dssp             CCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEE
T ss_pred             cccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCce
Confidence                 122 123334674   67788899999999999999887765221             111              


Q ss_pred             ------------EEEEEEeCCCEEEEEe-------------------------------------CCCcEEEEECCCCeE
Q 004214          468 ------------LRASFLTRGAQIVSCG-------------------------------------ADGLVKLWTVRTGEC  498 (768)
Q Consensus       468 ------------~~~~~s~~~~~l~s~~-------------------------------------~dg~i~iwd~~~~~~  498 (768)
                                  ..++++|++..+++..                                     .+|.|..||..+|+.
T Consensus       377 ~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~  456 (571)
T 2ad6_A          377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA  456 (571)
T ss_dssp             EESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE
T ss_pred             EECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE
Confidence                        1356788777776653                                     357899999999999


Q ss_pred             EEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214          499 IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE  540 (768)
Q Consensus       499 ~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~  540 (768)
                      +.++.. ...+.+..+...+..++.++.||.|+.||..+++.
T Consensus       457 ~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          457 KWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             EEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             EEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence            888763 23333333333566777899999999999887754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.81  E-value=1.8e-06  Score=82.69  Aligned_cols=194  Identities=7%  Similarity=0.034  Sum_probs=133.2

Q ss_pred             cEEEEEEecCCCcEEEEEeC--CCeEEEEeCCCCCCCCccccccceeeEee-ccCCCeEEEEEccCCCEEEEEeCCCcEE
Q 004214          329 AVGAVAFSKKLQNFLVSGSS--DHTIKVWSFDGLSDDAEQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQDRTAC  405 (768)
Q Consensus       329 ~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~  405 (768)
                      ....+.|++++ .++++.+.  ++.|.++|+..+..          ..... ........+++.. +++.++.-.++.+.
T Consensus        22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v----------~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~   89 (266)
T 2iwa_A           22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKV----------ENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGF   89 (266)
T ss_dssp             CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCE----------EEEEECCTTCCEEEEEEET-TEEEEEETTCSEEE
T ss_pred             CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCE----------EEEEecCCCcceEEEEEeC-CEEEEEEecCCEEE
Confidence            36789999984 34555443  68999999986532          11111 1111223455542 34444445678999


Q ss_pred             EEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC-----CcEEEEEEEeCCCEEE
Q 004214          406 VWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIV  480 (768)
Q Consensus       406 i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~  480 (768)
                      ++|..+++.+.++......  ...+++||+.++++..++.|.++|..+.+.+.++.-..     ..++.+.|. +|...+
T Consensus        90 viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyv  166 (266)
T 2iwa_A           90 IYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWA  166 (266)
T ss_dssp             EEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             EEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEE
Confidence            9999999999888633111  23466778777777788999999999999888876321     236678888 775445


Q ss_pred             EEeCCCcEEEEECCCCeEEEEeccCC-------------CcEEEEEEcCCCCE-EEEEeCCCcEEEEEcCC
Q 004214          481 SCGADGLVKLWTVRTGECIATYDKHE-------------DKIWALAVGKKTEM-FATGGSDALVNLWHDST  537 (768)
Q Consensus       481 s~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~v~~l~~s~~~~~-l~s~~~dg~v~vw~~~~  537 (768)
                      ....++.|.+.|..+++.+..+....             .....++|+|+++. ++++...+.|.+-++.+
T Consensus       167 n~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          167 NIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             ecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            55467899999999999999886321             34689999999865 55666788888888765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.81  E-value=5.2e-07  Score=95.38  Aligned_cols=226  Identities=11%  Similarity=0.045  Sum_probs=158.4

Q ss_pred             EEEEEeCCCeEEEEeCCCceEEEeee---------------------c------------c------cCcEEEEEEec--
Q 004214          299 LIVTGSKDNSVRLWDSESRCCVGVGT---------------------G------------H------MGAVGAVAFSK--  337 (768)
Q Consensus       299 ~l~~~~~dg~i~iwd~~~~~~~~~~~---------------------~------------~------~~~v~~~~~~~--  337 (768)
                      .|.+|+..|.++++-+.+++.+..+.                     .            +      .+.......+.  
T Consensus        17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~   96 (595)
T 1fwx_A           17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE   96 (595)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred             EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence            47788889999999888776665432                     0            0      11122234443  


Q ss_pred             ---CCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe-eccCCCeEEEEE-c-cCCCEEEEEe------------
Q 004214          338 ---KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAV-A-PNDSLVCTGS------------  399 (768)
Q Consensus       338 ---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~-s-~~~~~l~~~~------------  399 (768)
                         +|+.++++...++.|.+.|+...          +..... ......+..+++ + |+++++++++            
T Consensus        97 g~~DG~~lfVnd~~~~rVavIdl~t~----------~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~  166 (595)
T 1fwx_A           97 GKYDGRFLFMNDKANTRVARVRCDVM----------KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN  166 (595)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTT----------EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred             CCcCCCEEEEEcCCCCEEEEEECCCc----------eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcc
Confidence               77766666667788999999843          222222 223355778887 5 9999999885            


Q ss_pred             ------CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCC-----------------------------
Q 004214          400 ------QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK-----------------------------  444 (768)
Q Consensus       400 ------~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~-----------------------------  444 (768)
                            .++.+.+.|..+.+...++.--. ....++++|+|+++++++.+.                             
T Consensus       167 l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v  245 (595)
T 1fwx_A          167 MEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI  245 (595)
T ss_dssp             TTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred             cccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEec
Confidence                  24579999999998888877433 456788999999999888553                             


Q ss_pred             ---------cEEEEeCCC--Cce-eEEeecCCCcEEEEEEEeCCCEEEEEeC-CCcEEEEECCCCe------------EE
Q 004214          445 ---------TIKIWSISD--GSC-LKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGE------------CI  499 (768)
Q Consensus       445 ---------~i~iwd~~~--~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~------------~~  499 (768)
                               .|.+.|..+  ++. +..+.. .....++.++|||+++++++. +.+|.++|+.+.+            .+
T Consensus       246 ~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~  324 (595)
T 1fwx_A          246 AAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV  324 (595)
T ss_dssp             HHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred             cCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence                     477778776  544 455542 234557899999998877664 7799999998753            34


Q ss_pred             EEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          500 ATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       500 ~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      ..+. -......++|+|+|...++.--|+.|.+|++.+
T Consensus       325 ~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          325 AEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             ECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             EEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            4443 345678899999995556777899999999654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.80  E-value=0.00043  Score=76.05  Aligned_cols=471  Identities=11%  Similarity=0.061  Sum_probs=263.3

Q ss_pred             CCCcEEEEECCCCEEEEEEE-cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCC
Q 004214            8 ADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDG   86 (768)
Q Consensus         8 ~dg~i~vwd~~~~~~~~~l~-gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~   86 (768)
                      ....|+..++.+......+. +.-..+..|+|++.+.. +.++-..++.|..+++........+.........|++.+.+
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~   91 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLG   91 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCC
Confidence            57889999998764333322 23457889999997654 34555667889999986654444444333457889999876


Q ss_pred             CEEEEE-eCCCeEEEEECCCCeeeeee-ecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEe-eCCcEEE
Q 004214           87 STLISA-GRDKVVNLWDLRDYSCKLTV-PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITV-GERGIVR  163 (768)
Q Consensus        87 ~~L~s~-~~dg~i~vWd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~i~  163 (768)
                      ..|+.+ ...+.|.+.++........+ .....+..+++.|....                      .+++- +..+.|.
T Consensus        92 ~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~----------------------lY~tD~g~~~~I~  149 (628)
T 4a0p_A           92 KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGF----------------------MYWTEWGGKPKID  149 (628)
T ss_dssp             TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTE----------------------EEEEECSSSCEEE
T ss_pred             CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCe----------------------EEEeCCCCCCEEE
Confidence            666544 45678999998754322222 22334566666664331                      22222 3355666


Q ss_pred             EEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEe-cCeEEEEeeccCcccceeeEEEeeecccCCce
Q 004214          164 MWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA-DQQLLLYTTVEVPEKKMELILSKRLVGYNEEI  242 (768)
Q Consensus       164 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i  242 (768)
                      ..++++.......           ........+++.+.+..++.+.. .+.|..+++.....   ..     +.......
T Consensus       150 r~~~dG~~~~~l~-----------~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~---~v-----~~~~l~~P  210 (628)
T 4a0p_A          150 RAAMDGSERTTLV-----------PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR---EV-----IADDLPHP  210 (628)
T ss_dssp             EEETTSCSCEEEE-----------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EE-----EEECCSCE
T ss_pred             EEeCCCCceEEEE-----------CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce---EE-----eeccCCCc
Confidence            6666655211110           01234567788888777766654 46777777654321   11     11122344


Q ss_pred             eEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCcc------------------------ce--EEEe------e
Q 004214          243 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE------------------------IV--LCLD------T  290 (768)
Q Consensus       243 ~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~------------------------~v--~~l~------~  290 (768)
                      ..+++..  +.++++-...+.|...|..+++....+.....                        ..  .|+.      .
T Consensus       211 ~glav~~--~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~  288 (628)
T 4a0p_A          211 FGLTQYQ--DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFV  288 (628)
T ss_dssp             EEEEEET--TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEE
T ss_pred             eEEEEEC--CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCee
Confidence            5677653  34444444578888888766543332221100                        00  1110      0


Q ss_pred             eeecC--------------CCEEEEEEeCCCeEEEEeCCCceE--EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEE
Q 004214          291 CALSS--------------GKILIVTGSKDNSVRLWDSESRCC--VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKV  354 (768)
Q Consensus       291 ~~~~~--------------~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i  354 (768)
                      |..+.              ... ++.+. ...|+-..+.....  .......-..+.+++|.+....++++=...+.|..
T Consensus       289 C~C~~g~~l~~d~~~C~~~~~~-Ll~s~-~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r  366 (628)
T 4a0p_A          289 CGCPAHYSLNADNRTCSAPTTF-LLFSQ-KSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRK  366 (628)
T ss_dssp             EECSTTCEECTTSSCEECCSSE-EEEEE-TTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEcCCCcEecccCCcCccccce-eeeec-cceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEE
Confidence            00011              111 11111 23344443332210  01111122457789999876766666666788888


Q ss_pred             EeCCCCCCCCccccccceeeEeec------cCCCeEEEEEccCCCEE-EEEeCCCcEEEEeCCCCceEEEE-eccCCCeE
Q 004214          355 WSFDGLSDDAEQPMNLKAKAVVAA------HGKDINSLAVAPNDSLV-CTGSQDRTACVWRLPDLVSVVTF-RGHKRGIW  426 (768)
Q Consensus       355 wd~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~  426 (768)
                      +++.....          ......      ....+..+++.+.++.| .+-+..+.|.+.++. ++....+ ........
T Consensus       367 ~~~~g~~~----------~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr  435 (628)
T 4a0p_A          367 AQEDGSQG----------FTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPR  435 (628)
T ss_dssp             EETTSCSC----------EEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEE
T ss_pred             EEcCCCCc----------eEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCcee
Confidence            88764311          111111      23467899999976544 555667889999986 4443333 33456789


Q ss_pred             EEEEcc-CCCEEEEeeCCC--cEEEEeCCCCceeEEe-ecCCCcEEEEEEEeCCCEEEEEeC-CCcEEEEECCCCeEEEE
Q 004214          427 SVEFSP-VDQVVITASGDK--TIKIWSISDGSCLKTF-EGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGECIAT  501 (768)
Q Consensus       427 ~v~~s~-~~~~l~t~~~d~--~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~  501 (768)
                      ++++.| .|.++.+-....  .|...++. |.....+ ...-...+.+++.+.+..|+.+.. .+.|...++.. .....
T Consensus       436 ~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG-~~r~~  513 (628)
T 4a0p_A          436 AVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSG-ANRIV  513 (628)
T ss_dssp             EEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEE
T ss_pred             eEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCC-CceEE
Confidence            999999 555555543333  57777764 4444433 333456789999998888877765 57899999854 33333


Q ss_pred             ec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCH
Q 004214          502 YD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       502 ~~-~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      +. .......+|++.. +..+.+-.....|...+..++
T Consensus       514 ~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G  550 (628)
T 4a0p_A          514 LEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGR  550 (628)
T ss_dssp             EECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSS
T ss_pred             EEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCC
Confidence            32 2334567777754 455555555666666665543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.79  E-value=3.7e-06  Score=91.82  Aligned_cols=132  Identities=10%  Similarity=0.128  Sum_probs=90.8

Q ss_pred             cCCC---EEEEEeCCCcEEEEeCCCCceEEEEeccC-------------CCe----------------------------
Q 004214          390 PNDS---LVCTGSQDRTACVWRLPDLVSVVTFRGHK-------------RGI----------------------------  425 (768)
Q Consensus       390 ~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~v----------------------------  425 (768)
                      .+|+   .++.++.+|.++++|..+++.+..+....             .++                            
T Consensus       331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G  410 (582)
T 1flg_A          331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG  410 (582)
T ss_dssp             SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred             CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence            4674   78889999999999999999887665432             000                            


Q ss_pred             ----EEEEEccCCCEEEEee---------------------------------CCCcEEEEeCCCCceeEEeecCCCcEE
Q 004214          426 ----WSVEFSPVDQVVITAS---------------------------------GDKTIKIWSISDGSCLKTFEGHTSSVL  468 (768)
Q Consensus       426 ----~~v~~s~~~~~l~t~~---------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~v~  468 (768)
                          ..++++|+..++++..                                 .+|.|.-||+.+|+.+.+..... ++.
T Consensus       411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~  489 (582)
T 1flg_A          411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLW  489 (582)
T ss_dssp             SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCC
T ss_pred             ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCc
Confidence                1346677655554432                                 36889999999999887776332 222


Q ss_pred             EEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcE-EEEEEcCCCCEEE
Q 004214          469 RASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKI-WALAVGKKTEMFA  522 (768)
Q Consensus       469 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~s~~~~~l~  522 (768)
                      .-.+...+..++.++.||.++.||.++|+.+.++....+.. .-+.+..+|+..+
T Consensus       490 ~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          490 AGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             SCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence            22333457788889999999999999999999987543322 1255666776433

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.79  E-value=2.4e-06  Score=80.62  Aligned_cols=180  Identities=13%  Similarity=0.136  Sum_probs=123.9

Q ss_pred             EEEEEEecCCCcEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE-eCCCcEEE
Q 004214          330 VGAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACV  406 (768)
Q Consensus       330 v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i  406 (768)
                      ...+.|+ ++ .++.+.+.+|  .|+.+|+.++..          ...... ........+.+++..|... -.++.+.+
T Consensus        45 tqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv----------~~~~~l-~~~~FgeGit~~g~~ly~ltw~~~~v~v  111 (262)
T 3nol_A           45 TEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKT----------LQQIEL-GKRYFGEGISDWKDKIVGLTWKNGLGFV  111 (262)
T ss_dssp             EEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCE----------EEEEEC-CTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred             cceEEEE-CC-EEEEECCCCCCceEEEEECCCCcE----------EEEEec-CCccceeEEEEeCCEEEEEEeeCCEEEE
Confidence            4778888 43 5677777766  899999986532          111111 2233332233334455444 46889999


Q ss_pred             EeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC-----CcEEEEEEEeCCCEEEE
Q 004214          407 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIVS  481 (768)
Q Consensus       407 ~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~s  481 (768)
                      ||..+++.+.++....   ....++++++.|+.+..++.|.++|..+.+.+.++.-..     ..++.+.|. +|+..+.
T Consensus       112 ~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan  187 (262)
T 3nol_A          112 WNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFAN  187 (262)
T ss_dssp             EETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred             EECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEE
Confidence            9999999999988533   223344677777777778899999999999988876421     334557776 7765555


Q ss_pred             EeCCCcEEEEECCCCeEEEEeccC------------CCcEEEEEEcCCCCEEEEEeC
Q 004214          482 CGADGLVKLWTVRTGECIATYDKH------------EDKIWALAVGKKTEMFATGGS  526 (768)
Q Consensus       482 ~~~dg~i~iwd~~~~~~~~~~~~~------------~~~v~~l~~s~~~~~l~s~~~  526 (768)
                      .-.++.|.+.|.++|+.+..+...            ..-.+.++++|+++.|...|.
T Consensus       188 ~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          188 VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            556889999999999999888642            134688999998887777664

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.77  E-value=1.1e-05  Score=87.89  Aligned_cols=174  Identities=9%  Similarity=0.007  Sum_probs=102.3

Q ss_pred             CeEEEEeCCCceEEEeeecccC----------cEEEEEEe-cCCC--cEEEEEeCCCeEEEEeCCCCCCCCcccccc---
Q 004214          307 NSVRLWDSESRCCVGVGTGHMG----------AVGAVAFS-KKLQ--NFLVSGSSDHTIKVWSFDGLSDDAEQPMNL---  370 (768)
Q Consensus       307 g~i~iwd~~~~~~~~~~~~~~~----------~v~~~~~~-~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---  370 (768)
                      +.|..+|..+++.+..++....          ++. +... .+|+  ..++.++.+|.+.++|..++..........   
T Consensus       278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  356 (599)
T 1w6s_A          278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVN  356 (599)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred             ceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcc
Confidence            4899999999998877664321          221 2222 3453  467778899999999987764321111000   


Q ss_pred             ----------cee--------------eEeec--cCCCeEEEEEccCCCEEEEEe-------------------------
Q 004214          371 ----------KAK--------------AVVAA--HGKDINSLAVAPNDSLVCTGS-------------------------  399 (768)
Q Consensus       371 ----------~~~--------------~~~~~--~~~~i~~~~~s~~~~~l~~~~-------------------------  399 (768)
                                .+.              ....+  -...-..++++|+..++++..                         
T Consensus       357 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~  436 (599)
T 1w6s_A          357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATL  436 (599)
T ss_dssp             SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             cccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccc
Confidence                      000              00000  001112456677655554421                         


Q ss_pred             --------------CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC
Q 004214          400 --------------QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS  465 (768)
Q Consensus       400 --------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~  465 (768)
                                    .+|.+..||+.+++.+..... ..+...-.+...+.+++.++.|+.++.||.++|+.+.+++....
T Consensus       437 ~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g  515 (599)
T 1w6s_A          437 NMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG  515 (599)
T ss_dssp             EEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             eeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCC
Confidence                          347899999999988877652 22222212233477888899999999999999999998874332


Q ss_pred             c-EEEEEEEeCCCE-EEEE
Q 004214          466 S-VLRASFLTRGAQ-IVSC  482 (768)
Q Consensus       466 ~-v~~~~~s~~~~~-l~s~  482 (768)
                      . ..-+.+..+|++ +++.
T Consensus       516 ~~~~P~~y~~~G~qyv~~~  534 (599)
T 1w6s_A          516 AIGYPMTYTHKGTQYVAIY  534 (599)
T ss_dssp             CCSCCEEEEETTEEEEEEE
T ss_pred             cEeccEEEEeCCEEEEEEE
Confidence            1 122455677764 4433

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.74  E-value=0.0012  Score=77.63  Aligned_cols=467  Identities=9%  Similarity=0.064  Sum_probs=243.7

Q ss_pred             CcEEEEECCCCEEEEEEEcC-CCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeE--EEecCccceeEEEEEcCC-
Q 004214           10 RKVLVWDVDGGFCTHYFKGH-KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV--ATLDKHFSRVTSMAITSD-   85 (768)
Q Consensus        10 g~i~vwd~~~~~~~~~l~gh-~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~--~~l~~h~~~V~~l~fs~d-   85 (768)
                      ..|++.+...+..+...... ...|.+.+.+.  .+  ++.++ ++.+.++.+..++..  .... -...|.|+++.|. 
T Consensus       492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~--vvva~-g~~l~~fel~~~~L~~~~~~~-l~~evscl~i~~~~  565 (1158)
T 3ei3_A          492 ASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQ--VVVAV-GRALYYLQIHPQELRQISHTE-MEHEVACLDITPLG  565 (1158)
T ss_dssp             SCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SE--EEEEE-TTEEEEEEEETTEEEEEEEEE-CSSCEEEEECCCCS
T ss_pred             CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CE--EEEEE-CCEEEEEEeeCCceeeecccC-CCCceEEEEeecCC
Confidence            34556666555455555533 33566666553  34  44444 578888887665432  2211 3457999999863 


Q ss_pred             -----CCEEEEEeC-CCeEEEEECCCCeeeeeeecce--eEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEee
Q 004214           86 -----GSTLISAGR-DKVVNLWDLRDYSCKLTVPTYE--MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG  157 (768)
Q Consensus        86 -----~~~L~s~~~-dg~i~vWd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (768)
                           +++++.|.. |++|+|+++.+.+.+.......  .+.++++..-+                     ...++..+-
T Consensus       566 ~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~---------------------~~~~L~igl  624 (1158)
T 3ei3_A          566 DSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFE---------------------SSHYLLCAL  624 (1158)
T ss_dssp             SSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEET---------------------TEEEEEEEE
T ss_pred             CCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeC---------------------CCcEEEEEe
Confidence                 468888886 9999999998766654433211  22233222111                     134788888


Q ss_pred             CCcEEEEEEcC--CceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeee
Q 004214          158 ERGIVRMWNAD--SACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL  235 (768)
Q Consensus       158 ~~g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~  235 (768)
                      .+|.+.-+.++  ++.+...+..  .      -....+....+...+..-+.+..+....+|.....      +.. ..+
T Consensus       625 ~dG~l~~~~~d~~tg~l~d~r~~--~------LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~------l~~-s~l  689 (1158)
T 3ei3_A          625 GDGALFYFGLNIETGLLSDRKKV--T------LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHK------LVF-SNV  689 (1158)
T ss_dssp             TTSEEEEEEECTTTCCEEEEEEE--E------CCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSS------EEE-EEB
T ss_pred             CCCeEEEEEEcCCCCccccceeE--E------cCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCc------eEE-ecc
Confidence            99987655543  4433222110  0      00112222222222333344444444444443211      110 011


Q ss_pred             cccCCceeE-EEEecCC-CCEEEEEeCCCcEEEEECCCcee--eeeeeCCccceEEEeeeeecCCCEEEEEEe-------
Q 004214          236 VGYNEEILD-LKFLGEE-EQYLAVATNIEQVQVYDLSSMSC--SYVLAGHSEIVLCLDTCALSSGKILIVTGS-------  304 (768)
Q Consensus       236 ~~~~~~i~~-~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~-------  304 (768)
                       .. ..+.. ..|+... ..-++..+. +.++|..+.....  ++.++- ...+..++  +.+..+.+.+..+       
T Consensus       690 -~~-~~v~~~~~F~se~~~~g~v~~~~-~~LrI~~i~~~~~~~~~~ipL-~~Tprri~--y~~~~~~~~v~~~~~~~~~~  763 (1158)
T 3ei3_A          690 -NL-KEVNYMCPLNSDGYPDSLALANN-STLTIGTIDEIQKLHIRTVPL-YESPRKIC--YQEVSQCFGVLSSRIEVQDT  763 (1158)
T ss_dssp             -SS-SCCCEEEEECCSSSTTEEEEECS-SCEEEEEECCSSSEEEEEEEC-SSEEEEEE--EEGGGTEEEEEEEEEEEECS
T ss_pred             -Ch-HHhceEeccCcccCCCcEEEEcC-CceEEEEecccCCeeEEEEeC-CCCceEEE--EcCCCCEEEEEEEecccccc
Confidence             11 12323 3343322 234444443 5588877654321  111111 12223332  3333322111110       


Q ss_pred             -----------------------------------------CCCeEEEEeCCCceEEEeeec-ccCcEEEEE---EecCC
Q 004214          305 -----------------------------------------KDNSVRLWDSESRCCVGVGTG-HMGAVGAVA---FSKKL  339 (768)
Q Consensus       305 -----------------------------------------~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~---~~~~~  339 (768)
                                                               .-+.|++.|..+.+.+..+.- ....+.+++   |..+.
T Consensus       764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~  843 (1158)
T 3ei3_A          764 SGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDP  843 (1158)
T ss_dssp             SSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCC
T ss_pred             ccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCC
Confidence                                                     113577888877776655442 223344444   33344


Q ss_pred             CcEEEEEe----------CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 004214          340 QNFLVSGS----------SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL  409 (768)
Q Consensus       340 ~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~  409 (768)
                      ..++++|+          ..|.|.+|++...        ..+... .....+.|++++-- +|++++..  ...|++|++
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~--------kL~lv~-~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l  911 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG--------KLQTVA-EKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEW  911 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEETT--------EEEEEE-EEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEE
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEECC--------EEEEEE-EEEcCCcCEEEeee-CCEEEEEc--CCEEEEEEC
Confidence            56888886          3578999988621        222222 22345778887644 45444433  478999999


Q ss_pred             CCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC--CCCceeEEee-cCCCcEEEEEEEeCCCEEEEEeCCC
Q 004214          410 PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI--SDGSCLKTFE-GHTSSVLRASFLTRGAQIVSCGADG  486 (768)
Q Consensus       410 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~--~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg  486 (768)
                      ...+.+..-..+-..|..+.....++++++|..-..|.++..  ..++....-. .+..+++++.|-.++ .++.+..+|
T Consensus       912 ~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~g  990 (1158)
T 3ei3_A          912 TTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAF  990 (1158)
T ss_dssp             CTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTS
T ss_pred             CCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCC
Confidence            866544411112222333344345788999988777777554  3333222221 355688999998765 677799999


Q ss_pred             cEEEEECCCC-------e-E--EEEeccCCCcEEEEE---EcCC---------CCEEEEEeCCCcEEEEEcCCH
Q 004214          487 LVKLWTVRTG-------E-C--IATYDKHEDKIWALA---VGKK---------TEMFATGGSDALVNLWHDSTA  538 (768)
Q Consensus       487 ~i~iwd~~~~-------~-~--~~~~~~~~~~v~~l~---~s~~---------~~~l~s~~~dg~v~vw~~~~~  538 (768)
                      .+.+......       + .  ...+. ....|+++.   +.+.         ...++-++.+|.|.+.-.-++
T Consensus       991 Nl~vl~~~~~~~~~~~~~~L~~~~~fh-lG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~pl~~ 1063 (1158)
T 3ei3_A          991 NLFVCQKDSAATTDEERQHLQEVGLFH-LGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSE 1063 (1158)
T ss_dssp             EEEEEEECTTCCSTTGGGBEEEEEEEE-CSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEEECH
T ss_pred             cEEEEecCCCCCCccccceeeeEEEEe-CCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEEcCH
Confidence            9999875431       1 1  22332 344577765   2232         235788889999988876654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.74  E-value=2.7e-06  Score=92.83  Aligned_cols=254  Identities=12%  Similarity=0.085  Sum_probs=159.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCceeeeeeeCCcc----ceEEEeeeeecCCCEEEEEEeC------CCeEEEEeCCCceEEE
Q 004214          252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE----IVLCLDTCALSSGKILIVTGSK------DNSVRLWDSESRCCVG  321 (768)
Q Consensus       252 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~v~~l~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~  321 (768)
                      +..+++++.++.+..+|..+++..........    .+.+-   ....++. +++++.      +|.|..+|..+++.+.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~---P~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W  190 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQA---PFVAKDT-VLMGCSGAELGVRGAVNAFDLKTGELKW  190 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSC---CEEETTE-EEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccC---CEEECCE-EEEEecCCccCCCCEEEEEECCCCcEEE
Confidence            45788888899999999999998876543221    11110   1112444 555554      7999999999999887


Q ss_pred             eeecccCc-------------------------------------E-EEEEEecCCCcEEEEEeCC--------------
Q 004214          322 VGTGHMGA-------------------------------------V-GAVAFSKKLQNFLVSGSSD--------------  349 (768)
Q Consensus       322 ~~~~~~~~-------------------------------------v-~~~~~~~~~~~~l~s~~~d--------------  349 (768)
                      .+......                                     + ..+++.+... .++.++.+              
T Consensus       191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g-~vy~~~g~~~~~~~~~~~gd~~  269 (571)
T 2ad6_A          191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPGDNK  269 (571)
T ss_dssp             EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCT
T ss_pred             EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCC-eEEEECCCCccccCCccCCCce
Confidence            65532110                                     0 1245666544 45555432              


Q ss_pred             --CeEEEEeCCCCCCCCccccccceeeEee--cc--------CCCeEEEEEccCCC---EEEEEeCCCcEEEEeCCCCce
Q 004214          350 --HTIKVWSFDGLSDDAEQPMNLKAKAVVA--AH--------GKDINSLAVAPNDS---LVCTGSQDRTACVWRLPDLVS  414 (768)
Q Consensus       350 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~--------~~~i~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~  414 (768)
                        +.|..+|..++.          ......  .|        ..++ -+...++|+   .++.++.+|.++++|..+++.
T Consensus       270 y~~~v~Ald~~tG~----------~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  338 (571)
T 2ad6_A          270 WTMTIWGRDLDTGM----------AKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL  338 (571)
T ss_dssp             TTTEEEEEETTTCC----------EEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             eEEEEEEEecCCCc----------EEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCE
Confidence              358888887553          111111  11        1122 122334674   677889999999999999998


Q ss_pred             EEEEeccC-------------CCe--------------------------EEEEEccCCCEEEEee--------------
Q 004214          415 VVTFRGHK-------------RGI--------------------------WSVEFSPVDQVVITAS--------------  441 (768)
Q Consensus       415 ~~~~~~~~-------------~~v--------------------------~~v~~s~~~~~l~t~~--------------  441 (768)
                      +.......             .++                          ..++++|+..++++.+              
T Consensus       339 ~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~  418 (571)
T 2ad6_A          339 IVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPY  418 (571)
T ss_dssp             EEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCC
T ss_pred             EeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccccccccc
Confidence            87665321             111                          2467888877776653              


Q ss_pred             -----------------------CCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeE
Q 004214          442 -----------------------GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC  498 (768)
Q Consensus       442 -----------------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~  498 (768)
                                             .+|.|..||+.+++.+.++... ..+....+...+..++.++.||.|+.||.++|+.
T Consensus       419 ~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          419 RAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             CTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence                                   3578999999999998887632 2333333445677888899999999999999999


Q ss_pred             EEEeccCCCc-EEEEEEcCCCCEEE
Q 004214          499 IATYDKHEDK-IWALAVGKKTEMFA  522 (768)
Q Consensus       499 ~~~~~~~~~~-v~~l~~s~~~~~l~  522 (768)
                      +.++...... -..+.+..+|+.++
T Consensus       498 lw~~~~~~~~~~~p~~~~~~G~~yv  522 (571)
T 2ad6_A          498 LWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             EEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             EEEEeCCCCcEeeeEEEEECCEEEE
Confidence            9988743221 11233446676444

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.73  E-value=5e-06  Score=90.49  Aligned_cols=283  Identities=12%  Similarity=0.077  Sum_probs=169.7

Q ss_pred             CCEEEEEeC-CCcEEEEEC-CCceeeeeeeCCccc-----------eEEEeeeee-cCCC--EEEEEEeCCCeEEEEeCC
Q 004214          252 EQYLAVATN-IEQVQVYDL-SSMSCSYVLAGHSEI-----------VLCLDTCAL-SSGK--ILIVTGSKDNSVRLWDSE  315 (768)
Q Consensus       252 ~~~l~~~~~-~~~i~i~d~-~~~~~~~~~~~~~~~-----------v~~l~~~~~-~~~~--~~l~~~~~dg~i~iwd~~  315 (768)
                      +..+++++. ++.|.-+|. .+++.+..+......           ...+.  .. ..+.  ..++.++.|+.+..+|..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~a--v~p~~g~~~~rV~v~t~dg~l~AlDa~  139 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLA--YWPGDGKTPALILKTQLDGNVAALNAE  139 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCE--EECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceE--EEecCCcceeEEEEEcCCCEEEEEECC
Confidence            346777777 789999999 899988766443211           01111  21 1221  126778889999999999


Q ss_pred             CceEEEeeecccC----cEEE-EEEecCCCcEEEEEe------CCCeEEEEeCCCCCCCCcccccccee-----------
Q 004214          316 SRCCVGVGTGHMG----AVGA-VAFSKKLQNFLVSGS------SDHTIKVWSFDGLSDDAEQPMNLKAK-----------  373 (768)
Q Consensus       316 ~~~~~~~~~~~~~----~v~~-~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~-----------  373 (768)
                      +|+.+........    .+.+ -.+. + . .+++++      .+|.|..+|..++...-.........           
T Consensus       140 TG~~~W~~~~~~~~~~~~~~ssP~v~-~-g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~  216 (599)
T 1w6s_A          140 TGETVWKVENSDIKVGSTLTIAPYVV-K-D-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK  216 (599)
T ss_dssp             TCCEEEEEECCCGGGTCBCCSCCEEE-T-T-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred             CCCEEEeecCCCCCccceeecCCEEE-C-C-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence            9998876543210    1111 1111 2 2 355554      37899999988664211100000000           


Q ss_pred             ----------------eEe-eccCCCeEEEEEccCCCEEEEEeCCC----------------cEEEEeCCCCceEEEEec
Q 004214          374 ----------------AVV-AAHGKDINSLAVAPNDSLVCTGSQDR----------------TACVWRLPDLVSVVTFRG  420 (768)
Q Consensus       374 ----------------~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg----------------~i~i~d~~~~~~~~~~~~  420 (768)
                                      ... .+....-..+++.+...+++.++.++                .|..+|..+++.+..++.
T Consensus       217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~  296 (599)
T 1w6s_A          217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK  296 (599)
T ss_dssp             CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred             cccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeec
Confidence                            000 00000112456777777888877653                799999999999888775


Q ss_pred             cCCC---------eEEEEEc-cCC---CEEEEeeCCCcEEEEeCCCCceeEEeecCC-------------CcE-------
Q 004214          421 HKRG---------IWSVEFS-PVD---QVVITASGDKTIKIWSISDGSCLKTFEGHT-------------SSV-------  467 (768)
Q Consensus       421 ~~~~---------v~~v~~s-~~~---~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~v-------  467 (768)
                      ....         ..-+... .+|   ..++.++.+|.+.++|..+|+.+....-..             .++       
T Consensus       297 ~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~  376 (599)
T 1w6s_A          297 TPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGT  376 (599)
T ss_dssp             STTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCC
T ss_pred             CCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCC
Confidence            3221         1112222 467   577888999999999999999887664211             111       


Q ss_pred             -------------------EEEEEEeCCCEEEEE---------------------------------e------CCCcEE
Q 004214          468 -------------------LRASFLTRGAQIVSC---------------------------------G------ADGLVK  489 (768)
Q Consensus       468 -------------------~~~~~s~~~~~l~s~---------------------------------~------~dg~i~  489 (768)
                                         ..++++|+..++++.                                 +      .+|.|.
T Consensus       377 ~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~  456 (599)
T 1w6s_A          377 RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIK  456 (599)
T ss_dssp             CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEE
T ss_pred             CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEE
Confidence                               134566665555432                                 1      347899


Q ss_pred             EEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214          490 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE  540 (768)
Q Consensus       490 iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~  540 (768)
                      .||+.+|+.+.+... ..+.++-.+...+..++.++.||.|+.||..+++.
T Consensus       457 A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~  506 (599)
T 1w6s_A          457 AYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDL  506 (599)
T ss_dssp             EECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             EEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCE
Confidence            999999998887752 22222111223567778899999999999988754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.71  E-value=5.8e-06  Score=79.12  Aligned_cols=194  Identities=8%  Similarity=-0.067  Sum_probs=132.5

Q ss_pred             eEEEeeeeecCCCEEEEEEeC--CCeEEEEeCCCceEEEeeecccC-cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCC
Q 004214          285 VLCLDTCALSSGKILIVTGSK--DNSVRLWDSESRCCVGVGTGHMG-AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS  361 (768)
Q Consensus       285 v~~l~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  361 (768)
                      ...+.  +.++ +.++++.+.  ++.|+++|+.+++.+..+..... ....+++.  +..+.++.-.++.+.++|.... 
T Consensus        23 ~~Gl~--~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~-   96 (266)
T 2iwa_A           23 TQGLV--YAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL-   96 (266)
T ss_dssp             EEEEE--ECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTT-
T ss_pred             cccEE--EeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCC-
Confidence            45665  5554 454454443  68999999999999887653222 22345554  4456666667899999998743 


Q ss_pred             CCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC-----CCeEEEEEccCCCE
Q 004214          362 DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK-----RGIWSVEFSPVDQV  436 (768)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~v~~s~~~~~  436 (768)
                               +....+.....  ....+++||+.++++..++.|.++|..+.+.+..+.-..     ..++.+.|. ++.+
T Consensus        97 ---------~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l  164 (266)
T 2iwa_A           97 ---------SNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV  164 (266)
T ss_dssp             ---------EEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             ---------cEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence                     22222221101  123466788878777788999999999998888776322     136678888 6766


Q ss_pred             EEEeeCCCcEEEEeCCCCceeEEeecC-------------CCcEEEEEEEeCCCEEEE-EeCCCcEEEEECCCC
Q 004214          437 VITASGDKTIKIWSISDGSCLKTFEGH-------------TSSVLRASFLTRGAQIVS-CGADGLVKLWTVRTG  496 (768)
Q Consensus       437 l~t~~~d~~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~  496 (768)
                      .+....++.|.+.|..+++.+..+...             ......++|+|+++.|++ +...+.|.+.++...
T Consensus       165 yvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          165 WANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            666666889999999999999888632             135689999999876655 445778888877553

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.69  E-value=7.1e-06  Score=89.56  Aligned_cols=281  Identities=11%  Similarity=0.055  Sum_probs=168.3

Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeeCCccce---------EEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee
Q 004214          253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV---------LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG  323 (768)
Q Consensus       253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v---------~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  323 (768)
                      ..+++++..+.|.-+|..+++.+..+.......         ..+.    -.++. ++.++.++.|..+|..+++.+...
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a----~~~~~-v~~~t~dg~l~AlD~~TG~~~W~~  143 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAA----IYGDK-VFFGTLDASVVALNKNTGKVVWKK  143 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCE----EETTE-EEEEETTTEEEEEESSSCCEEEEE
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccE----EECCE-EEEEeCCCEEEEEECCCCCEEeee
Confidence            456666664559999999999887765433210         1111    12444 777889999999999999988765


Q ss_pred             ecccC----cEE-EEEEec---CCCcEEEEEe------CCCeEEEEeCCCCCCCCcccccccee----------------
Q 004214          324 TGHMG----AVG-AVAFSK---KLQNFLVSGS------SDHTIKVWSFDGLSDDAEQPMNLKAK----------------  373 (768)
Q Consensus       324 ~~~~~----~v~-~~~~~~---~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~----------------  373 (768)
                      .....    .+. +-.+..   +++..+++++      .++.|..+|..++...-..+......                
T Consensus       144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~  223 (582)
T 1flg_A          144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA  223 (582)
T ss_dssp             ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred             cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence            53221    111 111111   1222455554      37889999887664221110000000                


Q ss_pred             ---------------eEeeccCCCeEEEEEccCCCEEEEEeC--------------------C----CcEEEEeCCCCce
Q 004214          374 ---------------AVVAAHGKDINSLAVAPNDSLVCTGSQ--------------------D----RTACVWRLPDLVS  414 (768)
Q Consensus       374 ---------------~~~~~~~~~i~~~~~s~~~~~l~~~~~--------------------d----g~i~i~d~~~~~~  414 (768)
                                     .........-..++++|...++++++.                    |    +.|..+|..+++.
T Consensus       224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~  303 (582)
T 1flg_A          224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV  303 (582)
T ss_dssp             TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred             ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence                           000000011134677887778877763                    2    5899999999999


Q ss_pred             EEEEec--cC--------CCeEEEEEc-cCCC---EEEEeeCCCcEEEEeCCCCceeEEeecCCC--cE-----------
Q 004214          415 VVTFRG--HK--------RGIWSVEFS-PVDQ---VVITASGDKTIKIWSISDGSCLKTFEGHTS--SV-----------  467 (768)
Q Consensus       415 ~~~~~~--~~--------~~v~~v~~s-~~~~---~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~--~v-----------  467 (768)
                      +..++.  |.        .++. +... .+|+   .++.++.+|.++++|..+|+.+..+.....  ..           
T Consensus       304 ~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~  382 (582)
T 1flg_A          304 KWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPV  382 (582)
T ss_dssp             EEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEE
T ss_pred             EEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEe
Confidence            988764  21        1221 2222 4673   788899999999999999998876653310  00           


Q ss_pred             --------------------------------EEEEEEeCCCEEEEEe--------------------------------
Q 004214          468 --------------------------------LRASFLTRGAQIVSCG--------------------------------  483 (768)
Q Consensus       468 --------------------------------~~~~~s~~~~~l~s~~--------------------------------  483 (768)
                                                      ..++++|+...+++..                                
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~  462 (582)
T 1flg_A          383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD  462 (582)
T ss_dssp             ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred             EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence                                            0234555544444322                                


Q ss_pred             -CCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHH
Q 004214          484 -ADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE  540 (768)
Q Consensus       484 -~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~  540 (768)
                       .+|.|..||+.+|+.+.+...+ .++..-.....+..++.|+.||.++.||..+++.
T Consensus       463 ~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~  519 (582)
T 1flg_A          463 DHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             SCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence             3688999999999988777533 2222212222466788899999999999988754

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.67  E-value=8.5e-06  Score=76.82  Aligned_cols=181  Identities=10%  Similarity=0.008  Sum_probs=124.2

Q ss_pred             eEEEeeeeecCCCEEEEEEeCCC--eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004214          285 VLCLDTCALSSGKILIVTGSKDN--SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD  362 (768)
Q Consensus       285 v~~l~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  362 (768)
                      ...+.  +. + +.++.+.+.+|  .|+.+|+.+++.+........ .....+.+.+..+.++.-.++.+.+||..+.. 
T Consensus        45 tqGL~--~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~-  118 (262)
T 3nol_A           45 TEGFF--YR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR-  118 (262)
T ss_dssp             EEEEE--EE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTCC-
T ss_pred             cceEE--EE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeCCEEEEEEeeCCEEEEEECccCc-
Confidence            35554  43 4 46577777766  999999999999888765432 22322333345556666678999999987542 


Q ss_pred             CCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEecc--C---CCeEEEEEccCCCEE
Q 004214          363 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH--K---RGIWSVEFSPVDQVV  437 (768)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~v~~v~~s~~~~~l  437 (768)
                               ....+....   ....++++++.|+.+..++.|.++|..+.+.+..+...  .   ..++.+.|. +|++.
T Consensus       119 ---------~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ly  185 (262)
T 3nol_A          119 ---------QVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIF  185 (262)
T ss_dssp             ---------EEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             ---------EEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEE
Confidence                     333322211   22344467777777776788999999999988877642  2   234567776 67766


Q ss_pred             EEeeCCCcEEEEeCCCCceeEEeecC------------CCcEEEEEEEeCCCEEEEEeC
Q 004214          438 ITASGDKTIKIWSISDGSCLKTFEGH------------TSSVLRASFLTRGAQIVSCGA  484 (768)
Q Consensus       438 ~t~~~d~~i~iwd~~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l~s~~~  484 (768)
                      +..-.++.|.+.|..+|+.+..+...            ....+.++|+|+++.|++.+.
T Consensus       186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            66667889999999999999888632            135688999999888887775

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.66  E-value=3.9e-05  Score=78.06  Aligned_cols=236  Identities=9%  Similarity=0.000  Sum_probs=148.0

Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEE
Q 004214          253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA  332 (768)
Q Consensus       253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  332 (768)
                      .+|+.+.. ..|+.+++........+... ..+..++  +.+.++.++++-...+.|..+++..................
T Consensus        45 ~~ll~~~~-~~I~~i~~~g~~~~~~~~~~-~~~~~l~--~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~g  120 (349)
T 3v64_C           45 PVLLFANR-IDIRQVLPHRSEYTLLLNNL-ENAIALD--FHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGG  120 (349)
T ss_dssp             CEEEEECB-SCEEEECTTSCCEEEEECSC-SCEEEEE--EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred             ceeEeecc-cceEEEeCCCCeeEEeecCC-CceEEEE--EeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccE
Confidence            34544443 56888888766554444433 3356666  66677776777777889999998876544443333344578


Q ss_pred             EEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CC-CcEEEEeCC
Q 004214          333 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QD-RTACVWRLP  410 (768)
Q Consensus       333 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d-g~i~i~d~~  410 (768)
                      +++.+.+..++++-...+.|.+.++....          ..............++++|.+..|.... .. +.|..+++.
T Consensus       121 lavd~~~g~ly~~d~~~~~I~~~~~dG~~----------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d  190 (349)
T 3v64_C          121 LAVDWVHDKLYWTDSGTSRIEVANLDGAH----------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  190 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCS----------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             EEEecCCCeEEEEcCCCCeEEEEcCCCCc----------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC
Confidence            89988767677777778899999987431          1111222335678999999655555444 44 678888876


Q ss_pred             CCceEEEEeccCCCeEEEEEccCCCEEEEe-eCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEE
Q 004214          411 DLVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVK  489 (768)
Q Consensus       411 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  489 (768)
                      .......+...-.....++++|++..|+.+ ...+.|..+|+........+.........+++ ..+...++-...+.|.
T Consensus       191 G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~  269 (349)
T 3v64_C          191 GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSIN  269 (349)
T ss_dssp             SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEE
T ss_pred             CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEE
Confidence            433322222233457899999876655554 45678999998643333333333455677777 3444445555567888


Q ss_pred             EEECCCCeEEEEec
Q 004214          490 LWTVRTGECIATYD  503 (768)
Q Consensus       490 iwd~~~~~~~~~~~  503 (768)
                      .++..+|+.+..+.
T Consensus       270 ~~~~~~G~~~~~i~  283 (349)
T 3v64_C          270 SANKFTGKNQEIIR  283 (349)
T ss_dssp             EEETTTCCSCEEEE
T ss_pred             EEEccCCCccEEec
Confidence            88866776555543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.65  E-value=6.7e-06  Score=77.45  Aligned_cols=177  Identities=13%  Similarity=0.085  Sum_probs=123.5

Q ss_pred             EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCe--EEEEEccCCCEEEEEeCCCcEEEE
Q 004214          330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI--NSLAVAPNDSLVCTGSQDRTACVW  407 (768)
Q Consensus       330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~s~~~~~l~~~~~dg~i~i~  407 (768)
                      ...+.|+.  ..++++.+.+|.|+.+|+.++....          ..  -....  -.+++.. +++.+..-.++.+.+|
T Consensus        57 tqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~----------~~--l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~  121 (268)
T 3nok_A           57 TQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVW----------ME--RLGNIFAEGLASDG-ERLYQLTWTEGLLFTW  121 (268)
T ss_dssp             EEEEEEET--TEEEEEETTTTEEEECCSSCSSCSE----------EE--ECTTCCEEEEEECS-SCEEEEESSSCEEEEE
T ss_pred             cceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEe----------EE--CCCCcceeEEEEeC-CEEEEEEccCCEEEEE
Confidence            46788874  4578888889999999998653211          11  11222  2344432 3444445578899999


Q ss_pred             eCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC-----CcEEEEEEEeCCCEEEEE
Q 004214          408 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIVSC  482 (768)
Q Consensus       408 d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~s~  482 (768)
                      |..+++.+.++.... .-+.++  ++++.|+.+..++.|.++|..+.+.+.++.-..     ..++.+.|. +|+..+..
T Consensus       122 D~~Tl~~~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv  197 (268)
T 3nok_A          122 SGMPPQRERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANI  197 (268)
T ss_dssp             ETTTTEEEEEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             ECCcCcEEEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEE
Confidence            999999999988532 223444  568888888789999999999999988876322     244667776 77555555


Q ss_pred             eCCCcEEEEECCCCeEEEEeccC-------------CCcEEEEEEcCCCCEEEEEe
Q 004214          483 GADGLVKLWTVRTGECIATYDKH-------------EDKIWALAVGKKTEMFATGG  525 (768)
Q Consensus       483 ~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~l~~s~~~~~l~s~~  525 (768)
                      ..+..|.+.|.++|+.+..+...             .+-.+.++++|+++.|...|
T Consensus       198 w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          198 WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            46789999999999999887632             13568899999766555554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.65  E-value=4.1e-05  Score=79.16  Aligned_cols=247  Identities=9%  Similarity=-0.010  Sum_probs=154.8

Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEE
Q 004214          253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA  332 (768)
Q Consensus       253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  332 (768)
                      .+|+.+.. ..|+.+++........+... ..+..++  +.+.++.++++-...+.|..+++..................
T Consensus        88 ~~l~~~~~-~~I~~i~~~~~~~~~~~~~~-~~~~gl~--~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~g  163 (386)
T 3v65_B           88 PVLLFANR-IDIRQVLPHRSEYTLLLNNL-ENAIALD--FHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGG  163 (386)
T ss_dssp             CEEEEECB-SCEEEECTTSCCCEEEECSC-SCEEEEE--EETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCC
T ss_pred             ceeEeecC-ccceeeccCCCcEEEEecCC-CccEEEE--EecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccE
Confidence            34444443 67888888776655444433 3456666  66677776777777889999999876554444433344567


Q ss_pred             EEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-C-CcEEEEeCC
Q 004214          333 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-D-RTACVWRLP  410 (768)
Q Consensus       333 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d-g~i~i~d~~  410 (768)
                      +++.+.+..++++-...+.|.+.++....          ..............++++|.+..|+.+.. . +.|..+++.
T Consensus       164 lavd~~~g~lY~~d~~~~~I~~~~~dg~~----------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  233 (386)
T 3v65_B          164 LAVDWVHDKLYWTDSGTSRIEVANLDGAH----------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  233 (386)
T ss_dssp             EEEETTTTEEEEEETTTTEEEECBTTSCS----------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             EEEEeCCCeEEEEcCCCCeEEEEeCCCCc----------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence            88888767677777778888888876421          11112223356789999997666555543 3 678888876


Q ss_pred             CCceEEEEeccCCCeEEEEEccCCCEEEEe-eCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEE
Q 004214          411 DLVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVK  489 (768)
Q Consensus       411 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  489 (768)
                      ...........-.....++|+|++..|+.+ +..+.|..+|+........+.........+++ ..+..+++-...+.|.
T Consensus       234 G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~  312 (386)
T 3v65_B          234 GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSIN  312 (386)
T ss_dssp             SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEE
T ss_pred             CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEE
Confidence            543333333334457899999876655544 45678999998644333333333445677777 4444555555677898


Q ss_pred             EEECCCCeEEEEeccCCCcEEEEEE
Q 004214          490 LWTVRTGECIATYDKHEDKIWALAV  514 (768)
Q Consensus       490 iwd~~~~~~~~~~~~~~~~v~~l~~  514 (768)
                      .++..+|+.+..+.........+++
T Consensus       313 ~~~~~~G~~~~~i~~~~~~p~gi~v  337 (386)
T 3v65_B          313 SANKFTGKNQEIIRNKLHFPMDIHT  337 (386)
T ss_dssp             EEETTTCCSCEEEECSCSCCCCEEE
T ss_pred             EEECCCCcceEEEccCCCCCceEEE
Confidence            8887777766665433333334433

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.65  E-value=0.00014  Score=72.81  Aligned_cols=233  Identities=11%  Similarity=0.063  Sum_probs=145.3

Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC----ceEEEeeecccCc
Q 004214          254 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----RCCVGVGTGHMGA  329 (768)
Q Consensus       254 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~  329 (768)
                      +|+.+.. ..|+..|+.+......+.. ...+.+++  +.+.++.++++-...+.|..+++..    ......+......
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~-~~~p~g~~--~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~   78 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIPN-LRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA   78 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEECS-CSSEEEEE--EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred             EEEEECC-CeEEEEECCCcceEehhcC-CCceEEEE--EEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCC
Confidence            4444444 6789999988766555443 34456666  6666777677777789999999876    2222223222234


Q ss_pred             EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC--CcEEEE
Q 004214          330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD--RTACVW  407 (768)
Q Consensus       330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--g~i~i~  407 (768)
                      ...+++.+.+.+++++-...+.|.++++....          ..............++++|.+..|+.+...  +.|..+
T Consensus        79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~----------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~  148 (316)
T 1ijq_A           79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  148 (316)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSS----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             cCEEEEeecCCeEEEEECCCCEEEEEeCCCCc----------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEE
Confidence            57889987666667777788999999986321          111222233567899999966655555543  678888


Q ss_pred             eCCCCceEEEE-eccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCceeEEeec---CCCcEEEEEEEeCCCEEEEE
Q 004214          408 RLPDLVSVVTF-RGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGAQIVSC  482 (768)
Q Consensus       408 d~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~  482 (768)
                      ++... ....+ ...-.....++++|++..|+.+. ..+.|..+|+. |...+.+..   .......+++. .+..+++-
T Consensus       149 ~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d-g~~~~~~~~~~~~~~~P~giav~-~~~ly~~d  225 (316)
T 1ijq_A          149 GLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTD  225 (316)
T ss_dssp             ETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEECTTTTSSEEEEEEE-TTEEEEEE
T ss_pred             cCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC-CCceEEEeecCCccCCcEEEEEE-CCEEEEEE
Confidence            87543 33333 22334678999998776665554 56789999986 433333321   22345677774 34445555


Q ss_pred             eCCCcEEEEECCCCeEEEEec
Q 004214          483 GADGLVKLWTVRTGECIATYD  503 (768)
Q Consensus       483 ~~dg~i~iwd~~~~~~~~~~~  503 (768)
                      ...+.|..++..+|+.+..+.
T Consensus       226 ~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          226 IINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             TTTTEEEEEETTTCCCCEEEE
T ss_pred             CCCCeEEEEeCCCCcceEEEe
Confidence            557789999987776555553

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.63  E-value=0.0023  Score=75.15  Aligned_cols=388  Identities=12%  Similarity=0.098  Sum_probs=203.8

Q ss_pred             CCcEEEEECCCCEEEEEE-EcCCCcEEEEEEeeCC----CccEEEEEeC-CCcEEEEECCCCeeEEEecC-ccceeEEEE
Q 004214            9 DRKVLVWDVDGGFCTHYF-KGHKGVVSSILFHPDT----DKSLLFSGSD-DATVRVWDLLAKKCVATLDK-HFSRVTSMA   81 (768)
Q Consensus         9 dg~i~vwd~~~~~~~~~l-~gh~~~V~~l~~spd~----~~~~l~sg~~-dg~I~iWd~~~~~~~~~l~~-h~~~V~~l~   81 (768)
                      ++.|.++++..+.....- ..-...|+|+++.|.+    +..++|.|.. |++|+|+++.+.+.+....- -.....++.
T Consensus       531 g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~  610 (1158)
T 3ei3_A          531 GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSIL  610 (1158)
T ss_dssp             TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEE
T ss_pred             CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEE
Confidence            577888887766432211 1235689999998643    1245888986 99999999988776644321 112333443


Q ss_pred             Ec--CCCCEEEEEeCCCeEEEEEC--CCCeeeeeee---cceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEE
Q 004214           82 IT--SDGSTLISAGRDKVVNLWDL--RDYSCKLTVP---TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI  154 (768)
Q Consensus        82 fs--~d~~~L~s~~~dg~i~vWd~--~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (768)
                      +.  ....+|..+-.||.+..+.+  .+|.+.....   ...++.-..+...+                      ...++
T Consensus       611 l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~----------------------~~~V~  668 (1158)
T 3ei3_A          611 MTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLS----------------------TTNVF  668 (1158)
T ss_dssp             EEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSS----------------------CEEEE
T ss_pred             EEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCC----------------------ceeEE
Confidence            32  23468888889998765544  4444332210   11111111111111                      11333


Q ss_pred             EeeCCcEEEEEEcCCceeeeecCCceeecccccCcccce-eEEEEccC--CCceEEEEecCeEEEEeeccCcccceeeEE
Q 004214          155 TVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGF-TAATVLPS--NQGLLCVTADQQLLLYTTVEVPEKKMELIL  231 (768)
Q Consensus       155 ~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~  231 (768)
                      +.|+.-.+- +.-.+.-.+.....            ..+ ....|+..  .+.++ ...++.+++..+....    .+..
T Consensus       669 a~s~rp~li-y~~~~~l~~s~l~~------------~~v~~~~~F~se~~~~g~v-~~~~~~LrI~~i~~~~----~~~~  730 (1158)
T 3ei3_A          669 ACSDRPTVI-YSSNHKLVFSNVNL------------KEVNYMCPLNSDGYPDSLA-LANNSTLTIGTIDEIQ----KLHI  730 (1158)
T ss_dssp             EESSSCEEE-EESSSSEEEEEBSS------------SCCCEEEEECCSSSTTEEE-EECSSCEEEEEECCSS----SEEE
T ss_pred             EECCCCEEE-EEcCCceEEeccCh------------HHhceEeccCcccCCCcEE-EEcCCceEEEEecccC----CeeE
Confidence            333332222 22222101100000            111 22223222  23344 4445668888775432    1111


Q ss_pred             EeeecccCCceeEEEEecCCCCEEEEEe------------------------------------------------CCCc
Q 004214          232 SKRLVGYNEEILDLKFLGEEEQYLAVAT------------------------------------------------NIEQ  263 (768)
Q Consensus       232 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~------------------------------------------------~~~~  263 (768)
                        ....-...+..++|++....+.+..+                                                ..+.
T Consensus       731 --~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~  808 (1158)
T 3ei3_A          731 --RTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHN  808 (1158)
T ss_dssp             --EEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEE
T ss_pred             --EEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEE
Confidence              11112235555666543333222221                                                0134


Q ss_pred             EEEEECCCceeeeeeeC-CccceEEEeeeeecCC-CEEEEEEe----------CCCeEEEEeCCCceEEEeee-cccCcE
Q 004214          264 VQVYDLSSMSCSYVLAG-HSEIVLCLDTCALSSG-KILIVTGS----------KDNSVRLWDSESRCCVGVGT-GHMGAV  330 (768)
Q Consensus       264 i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~-~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~-~~~~~v  330 (768)
                      |+++|..+.+.+..+.- ....+.|+..+.+..+ ..+++.|+          ..|.|.+|++..++.....+ ...+++
T Consensus       809 i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v  888 (1158)
T 3ei3_A          809 LLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAV  888 (1158)
T ss_dssp             EEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCE
T ss_pred             EEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcC
Confidence            77888877776655432 3455677765555442 35688776          35889999987554333222 346788


Q ss_pred             EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-
Q 004214          331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL-  409 (768)
Q Consensus       331 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~-  409 (768)
                      ++++--..   +|++|- ...|++|++.....         ...... +-..|..+.....++++++|..-..+.++.. 
T Consensus       889 ~al~~~~g---~Lla~i-g~~l~vy~l~~~~~---------L~~~~~-~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~  954 (1158)
T 3ei3_A          889 YSMVEFNG---KLLASI-NSTVRLYEWTTEKE---------LRTECN-HYNNIMALYLKTKGDFILVGDLMRSVLLLAYK  954 (1158)
T ss_dssp             EEEEEETT---EEEEEE-TTEEEEEEECTTSC---------EEEEEE-ECCCSCEEEEEEETTEEEEEESSBCEEEEEEE
T ss_pred             EEEeeeCC---EEEEEc-CCEEEEEECCCCce---------EEEEee-ccccEEEEEEeccCCEEEEEEhhheEEEEEEE
Confidence            88876543   344443 47899999874321         111111 1122333444446789999988877777654 


Q ss_pred             -CCCceEEEEe-ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCC
Q 004214          410 -PDLVSVVTFR-GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD  453 (768)
Q Consensus       410 -~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~  453 (768)
                       ...+....-+ .+...++++.|-.++ .++.+..+|++.++....
T Consensus       955 ~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          955 PMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             TTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred             cCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence             3333332222 245578888887554 677789999999987643

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.61  E-value=2.4e-05  Score=73.09  Aligned_cols=189  Identities=11%  Similarity=0.125  Sum_probs=126.0

Q ss_pred             EEEeeeccc--CcEEEEEEecCCCcEEEEEeCC--CeEEEEeCCCCCCCCccccccceeeEeeccCCCeE--EEEEccCC
Q 004214          319 CVGVGTGHM--GAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN--SLAVAPND  392 (768)
Q Consensus       319 ~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~s~~~  392 (768)
                      .+..+ .|.  .-...+.|++  ..++.+.+.+  ..|+.+|+.++..          ...... .....  .+++. ++
T Consensus        11 v~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv----------~~~~~l-~~~~fgeGi~~~-~~   75 (243)
T 3mbr_X           11 VVKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRI----------LQRAEV-PPPYFGAGIVAW-RD   75 (243)
T ss_dssp             EEEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCE----------EEEEEC-CTTCCEEEEEEE-TT
T ss_pred             EEEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCE----------EEEEeC-CCCcceeEEEEe-CC
Confidence            44444 343  3467888886  3466666665  4899999986532          111111 11222  33333 23


Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCC-----CcE
Q 004214          393 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSV  467 (768)
Q Consensus       393 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v  467 (768)
                      ++....-.++.+.+||..+.+.+.++..... -+.++  +++..|+.+..++.|.++|..+.+.+.++.-..     ..+
T Consensus        76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~l  152 (243)
T 3mbr_X           76 RLIQLTWRNHEGFVYDLATLTPRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNL  152 (243)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             EEEEEEeeCCEEEEEECCcCcEEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccc
Confidence            4445555788999999999999999885432 24444  567777777778999999999999988887422     244


Q ss_pred             EEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccC-------------CCcEEEEEEcCCCCEEEEEeC
Q 004214          468 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH-------------EDKIWALAVGKKTEMFATGGS  526 (768)
Q Consensus       468 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~l~~s~~~~~l~s~~~  526 (768)
                      +.+.+. +|+..+..-.+..|.+.|.++|+.+..+...             ..-.+.++++|+++.|...|.
T Consensus       153 NeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          153 NELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             eeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            556655 6665555546779999999999999887622             134688999998777666653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.60  E-value=0.00014  Score=73.92  Aligned_cols=248  Identities=11%  Similarity=-0.005  Sum_probs=154.7

Q ss_pred             ceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCcc
Q 004214          204 GLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE  283 (768)
Q Consensus       204 ~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~  283 (768)
                      ..+..+..+.|...+......        ..+......+..++|.+.++.++.+-...+.|..+++........+.....
T Consensus        45 ~~ll~~~~~~I~~i~~~g~~~--------~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~  116 (349)
T 3v64_C           45 PVLLFANRIDIRQVLPHRSEY--------TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE  116 (349)
T ss_dssp             CEEEEECBSCEEEECTTSCCE--------EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred             ceeEeecccceEEEeCCCCee--------EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCC
Confidence            344445555666665543211        111122345788899877777777767788999999887654444433333


Q ss_pred             ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC-CeEEEEeCCCCCC
Q 004214          284 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-HTIKVWSFDGLSD  362 (768)
Q Consensus       284 ~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~  362 (768)
                      ....++  +.+.++.+.++-...+.|.+.++..................+++.|.+..++++-... +.|..++++....
T Consensus       117 ~p~gla--vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~  194 (349)
T 3v64_C          117 SPGGLA--VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR  194 (349)
T ss_dssp             CCCEEE--EETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CccEEE--EecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc
Confidence            344555  5556667677777788999999876544444444445678999999767666666555 7888888764311


Q ss_pred             CCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee
Q 004214          363 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS  441 (768)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~  441 (768)
                                .......-...+.++++|++..|..+. ..+.|..+++........+.........+++ ..+.++++-.
T Consensus       195 ----------~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~  263 (349)
T 3v64_C          195 ----------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDW  263 (349)
T ss_dssp             ----------EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEET
T ss_pred             ----------EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecC
Confidence                      111111234568999998666655554 5678999998754433334333445677887 3466666666


Q ss_pred             CCCcEEEEeCCCCceeEEeecCCCcEEEEEE
Q 004214          442 GDKTIKIWSISDGSCLKTFEGHTSSVLRASF  472 (768)
Q Consensus       442 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  472 (768)
                      ..+.|..++..+|+.+..+.........+++
T Consensus       264 ~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v  294 (349)
T 3v64_C          264 HTKSINSANKFTGKNQEIIRNKLHFPMDIHT  294 (349)
T ss_dssp             TTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred             CCCeEEEEEccCCCccEEeccCCCCCceEEE
Confidence            7788999987778777776544333444444

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.57  E-value=1.2e-05  Score=75.77  Aligned_cols=173  Identities=8%  Similarity=-0.000  Sum_probs=121.3

Q ss_pred             CCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE
Q 004214          296 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV  375 (768)
Q Consensus       296 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  375 (768)
                      ++.++.+.+.+|.|+.+|+.+++.+... .. .........+.+..+.++.-.++.+.+||..+.          +....
T Consensus        64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl----------~~~~t  131 (268)
T 3nok_A           64 QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPP----------QRERT  131 (268)
T ss_dssp             TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTT----------EEEEE
T ss_pred             CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcC----------cEEEE
Confidence            4667888888999999999999887776 22 233332233345556777778899999998743          23333


Q ss_pred             eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC--C---CeEEEEEccCCCEEEEeeCCCcEEEEe
Q 004214          376 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK--R---GIWSVEFSPVDQVVITASGDKTIKIWS  450 (768)
Q Consensus       376 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~---~v~~v~~s~~~~~l~t~~~d~~i~iwd  450 (768)
                      +... ..-..  ++++++.|+.+..++.|.++|..+.+.+..+.-..  .   .++.+.|. +|++.+....+..|.+.|
T Consensus       132 i~~~-~eGwG--Lt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vID  207 (268)
T 3nok_A          132 TRYS-GEGWG--LCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEID  207 (268)
T ss_dssp             EECS-SCCCC--EEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEEC
T ss_pred             EeCC-CceeE--EecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEe
Confidence            2221 22233  33667888887778999999999999888776422  2   34667777 677666666788999999


Q ss_pred             CCCCceeEEeecC-------------CCcEEEEEEEeCCCEEEEEeC
Q 004214          451 ISDGSCLKTFEGH-------------TSSVLRASFLTRGAQIVSCGA  484 (768)
Q Consensus       451 ~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~s~~~  484 (768)
                      ..+|+.+..+...             ....+.+++.|+++.|++.+.
T Consensus       208 p~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          208 PATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            9999999887621             135688999998777666554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.57  E-value=0.00012  Score=75.75  Aligned_cols=250  Identities=12%  Similarity=0.003  Sum_probs=156.8

Q ss_pred             CceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCc
Q 004214          203 QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS  282 (768)
Q Consensus       203 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~  282 (768)
                      ..++..+..+.|+.+++.....        ..+......+..++|.+.++.++.+-...+.|..++.........+....
T Consensus        87 ~~~l~~~~~~~I~~i~~~~~~~--------~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~  158 (386)
T 3v65_B           87 EPVLLFANRIDIRQVLPHRSEY--------TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL  158 (386)
T ss_dssp             CCEEEEECBSCEEEECTTSCCC--------EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred             cceeEeecCccceeeccCCCcE--------EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence            3344555556677666544321        11112234578899987777777777778899999988765444443322


Q ss_pred             cceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC-CeEEEEeCCCCC
Q 004214          283 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-HTIKVWSFDGLS  361 (768)
Q Consensus       283 ~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~  361 (768)
                      .....++  +.+.++.++++-...+.|.+.++..................+++.|.+..++++-... +.|..++++...
T Consensus       159 ~~p~gla--vd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~  236 (386)
T 3v65_B          159 ESPGGLA--VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG  236 (386)
T ss_dssp             SCCCCEE--EETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred             CCccEEE--EEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence            3334454  5555666667777778899988876544444444445678999999877666665555 788888876431


Q ss_pred             CCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEe
Q 004214          362 DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA  440 (768)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~  440 (768)
                                ........-...+.++++|++..|..+ +..+.|..+++........+.........+++ ..+.++++-
T Consensus       237 ----------~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td  305 (386)
T 3v65_B          237 ----------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTD  305 (386)
T ss_dssp             ----------CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEE
T ss_pred             ----------cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEee
Confidence                      111111223457899999866655555 45678999998654433334333445677888 446666777


Q ss_pred             eCCCcEEEEeCCCCceeEEeecCCCcEEEEEEE
Q 004214          441 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL  473 (768)
Q Consensus       441 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  473 (768)
                      ...+.|..+|..+|+.+..+.........+++.
T Consensus       306 ~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~  338 (386)
T 3v65_B          306 WHTKSINSANKFTGKNQEIIRNKLHFPMDIHTL  338 (386)
T ss_dssp             TTTTEEEEEETTTCCSCEEEECSCSCCCCEEEE
T ss_pred             CCCCeEEEEECCCCcceEEEccCCCCCceEEEE
Confidence            778899999977888777776444444445443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.55  E-value=3.9e-05  Score=77.34  Aligned_cols=231  Identities=11%  Similarity=0.003  Sum_probs=143.5

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeCCCceEEEeee-------------------cccCcEEEEEEecCCCcEEEEEeCCCeE
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-------------------GHMGAVGAVAFSKKLQNFLVSGSSDHTI  352 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------------~~~~~v~~~~~~~~~~~~l~s~~~dg~i  352 (768)
                      +.+++.. ++++..++.|..|+..++.......                   ........+++.++... |+.+...+.|
T Consensus        26 ~d~~g~~-l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~~~~i  103 (322)
T 2fp8_A           26 FDSTNKG-FYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDCYYHL  103 (322)
T ss_dssp             CCTTCSS-EEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEETTTEE
T ss_pred             EcCCCCE-EEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEECCCCE
Confidence            4455543 7778888999999988764432211                   01235788999973233 5555555567


Q ss_pred             EEEeCCCCCCCCccccccceee-Eee-ccCCCeEEEEEcc-CCCEEEEEeC-----------------CCcEEEEeCCCC
Q 004214          353 KVWSFDGLSDDAEQPMNLKAKA-VVA-AHGKDINSLAVAP-NDSLVCTGSQ-----------------DRTACVWRLPDL  412 (768)
Q Consensus       353 ~iwd~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~~~~s~-~~~~l~~~~~-----------------dg~i~i~d~~~~  412 (768)
                      ..+|......        .... ... ......+.+++.+ +|++.++-..                 ++.|..||..++
T Consensus       104 ~~~d~~~g~~--------~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A          104 SVVGSEGGHA--------TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             EEECTTCEEC--------EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             EEEeCCCCEE--------EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence            7787653210        0000 000 1123468899999 9987776432                 367888998776


Q ss_pred             ceEEEEeccCCCeEEEEEccCCCEEEEe-eCCCcEEEEeCCCCc--eeEEeecCCCcEEEEEEEeCCCEEEEEeC-----
Q 004214          413 VSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGS--CLKTFEGHTSSVLRASFLTRGAQIVSCGA-----  484 (768)
Q Consensus       413 ~~~~~~~~~~~~v~~v~~s~~~~~l~t~-~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-----  484 (768)
                      +...... .......++|+|+++.|+.+ ...+.|.+|++....  ....+....+ ...+++.++|++.++...     
T Consensus       176 ~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~  253 (322)
T 2fp8_A          176 ETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGN  253 (322)
T ss_dssp             EEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred             EEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence            5433222 22345679999999866555 556889999987421  1122221223 778999999987666544     


Q ss_pred             -----CCcEEEEECCCCeEEEEeccCC----CcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          485 -----DGLVKLWTVRTGECIATYDKHE----DKIWALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       485 -----dg~i~iwd~~~~~~~~~~~~~~----~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                           .+.|..+|. .++.+..+....    ..++++++ .+++.+++....+.|..+++.
T Consensus       254 ~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          254 MHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             TTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             ccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence                 467888886 577777775442    34666666 467667776678889998875

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.54  E-value=0.0005  Score=71.22  Aligned_cols=247  Identities=10%  Similarity=0.034  Sum_probs=155.0

Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc----eEEEeeecccC
Q 004214          253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR----CCVGVGTGHMG  328 (768)
Q Consensus       253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~  328 (768)
                      .+|+.+.. ..|+..++.......... ....+..++  +.+.++.++++-...+.|+.+++...    ...........
T Consensus        84 ~~ll~~~~-~~I~~i~l~~~~~~~~~~-~~~~~~~l~--~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~  159 (400)
T 3p5b_L           84 AYLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ  159 (400)
T ss_dssp             CEEEEEET-TEEEEECTTSCSCEEEEC-SCSCEEEEE--EETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred             ceeEEecc-ceeEEEccCCcceeEecc-ccCcceEEe--eeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence            34444443 789999988766554443 344566776  66777776777677889999988752    22333333445


Q ss_pred             cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC--CCcEEE
Q 004214          329 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ--DRTACV  406 (768)
Q Consensus       329 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i  406 (768)
                      ....+++.+.+.+++++-...+.|.+.++....          ..............++++|.+..|+....  .+.|..
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~----------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~  229 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKK  229 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEECTTTCS----------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEE
T ss_pred             CcccEEEEecCCceEEEECCCCeEEEEeCCCCc----------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEE
Confidence            678899998667677777788899999886431          12222223455789999997666665553  368888


Q ss_pred             EeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCceeEEeec--CCCcEEEEEEEeCCCEEEEEe
Q 004214          407 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSCLKTFEG--HTSSVLRASFLTRGAQIVSCG  483 (768)
Q Consensus       407 ~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~  483 (768)
                      .++........+...-.....|+++|++..|+.+. ..+.|..+|+...........  .-.....+++. .+..+++-.
T Consensus       230 ~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~  308 (400)
T 3p5b_L          230 GGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDI  308 (400)
T ss_dssp             EETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEES
T ss_pred             EeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecC
Confidence            88865444333333345678999998777666654 467899999864333222222  22345566662 333444555


Q ss_pred             CCCcEEEEECCCCeEEEEeccCCCcEEEEEE
Q 004214          484 ADGLVKLWTVRTGECIATYDKHEDKIWALAV  514 (768)
Q Consensus       484 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~  514 (768)
                      ..+.|..+|..+|+.+..+........++.+
T Consensus       309 ~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v  339 (400)
T 3p5b_L          309 INEAIFSANRLTGSDVNLLAENLLSPEDMVL  339 (400)
T ss_dssp             SSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred             CCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence            5678999998888776666544444455543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.50  E-value=0.00015  Score=72.34  Aligned_cols=236  Identities=10%  Similarity=0.035  Sum_probs=144.1

Q ss_pred             EEEEEeCCCcEEEEECCCce-eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE-EEeeecccCcEE
Q 004214          254 YLAVATNIEQVQVYDLSSMS-CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTGHMGAVG  331 (768)
Q Consensus       254 ~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~  331 (768)
                      +|+.+. ...|+.+++.... ....+.........++  +.+.++.++++-...+.|..+++..+.. ............
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld--~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~   82 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVD--FVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD   82 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEE--EEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEE--EEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc
Confidence            444443 3688889988764 1212222223445665  6666677677777788999999876532 112222223456


Q ss_pred             EEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC--CCcEEEEeC
Q 004214          332 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ--DRTACVWRL  409 (768)
Q Consensus       332 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~  409 (768)
                      .+++.+.+..++++-...+.|.++++....          ..............++++|.+..|+.+..  .+.|..+++
T Consensus        83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~----------~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~  152 (318)
T 3sov_A           83 GLACDWLGEKLYWTDSETNRIEVSNLDGSL----------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM  152 (318)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCS----------CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEET
T ss_pred             EEEEEcCCCeEEEEECCCCEEEEEECCCCc----------EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEc
Confidence            788888667677777778899999987431          11111233456789999997666666553  577888887


Q ss_pred             CCCceEEEEeccCCCeEEEEEccCCCEEEEe-eCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcE
Q 004214          410 PDLVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV  488 (768)
Q Consensus       410 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  488 (768)
                      ............-.....++++|++..|+.+ +..+.|..+|+........+.+.......+++. .+..+.+-...+.|
T Consensus       153 dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V  231 (318)
T 3sov_A          153 DGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSI  231 (318)
T ss_dssp             TSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEE
T ss_pred             CCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeE
Confidence            6433222222233456899999976655554 456789999986433222223334456677774 33344454556789


Q ss_pred             EEEECCCCeEEEEec
Q 004214          489 KLWTVRTGECIATYD  503 (768)
Q Consensus       489 ~iwd~~~~~~~~~~~  503 (768)
                      ..++..+|+....+.
T Consensus       232 ~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          232 LACNKYTGEGLREIH  246 (318)
T ss_dssp             EEEETTTCCSCEEEE
T ss_pred             EEEECCCCCceEEEe
Confidence            999988887655553

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.48  E-value=0.00082  Score=67.18  Aligned_cols=236  Identities=11%  Similarity=-0.033  Sum_probs=143.7

Q ss_pred             EEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC----ceeeeeeeCC
Q 004214          206 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS----MSCSYVLAGH  281 (768)
Q Consensus       206 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~----~~~~~~~~~~  281 (768)
                      +..+..+.|...++.....        ..+......+..++|.+.++.++.+-...+.|..+++..    ......+...
T Consensus         4 ll~~~~~~I~~i~~~~~~~--------~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~   75 (316)
T 1ijq_A            4 LFFTNRHEVRKMTLDRSEY--------TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD   75 (316)
T ss_dssp             EEEECBSSEEEEETTSCCC--------EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS
T ss_pred             EEEECCCeEEEEECCCcce--------EehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC
Confidence            4444555666666654321        011122345678888876666777777778999999876    2222223222


Q ss_pred             ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC-CeEEEEeCCCC
Q 004214          282 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-HTIKVWSFDGL  360 (768)
Q Consensus       282 ~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~  360 (768)
                      ......++  +...++.+.++-...+.|.++++..................+++.|.+..++++.... +.|...+++..
T Consensus        76 ~~~p~gla--vd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~  153 (316)
T 1ijq_A           76 IQAPDGLA--VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  153 (316)
T ss_dssp             CSCCCEEE--EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCcCEEE--EeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC
Confidence            23345555  4455666566767788999999876544444443445678999999767555555443 78888887632


Q ss_pred             CCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceEEEEec--cCCCeEEEEEccCCCEE
Q 004214          361 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVVTFRG--HKRGIWSVEFSPVDQVV  437 (768)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~--~~~~v~~v~~s~~~~~l  437 (768)
                      .          ........-...+.++++|++..|..+. ..+.|..+|+...........  .......+++. .+.++
T Consensus       154 ~----------~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly  222 (316)
T 1ijq_A          154 D----------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVF  222 (316)
T ss_dssp             C----------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEE
T ss_pred             C----------eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEE
Confidence            1          1111112234578999999766665554 556899999874332222221  22345677775 36666


Q ss_pred             EEeeCCCcEEEEeCCCCceeEEeec
Q 004214          438 ITASGDKTIKIWSISDGSCLKTFEG  462 (768)
Q Consensus       438 ~t~~~d~~i~iwd~~~~~~~~~~~~  462 (768)
                      ++-...+.|..++..+|+.+..+..
T Consensus       223 ~~d~~~~~V~~~~~~~g~~~~~i~~  247 (316)
T 1ijq_A          223 WTDIINEAIFSANRLTGSDVNLLAE  247 (316)
T ss_dssp             EEETTTTEEEEEETTTCCCCEEEEC
T ss_pred             EEECCCCeEEEEeCCCCcceEEEec
Confidence            6777778999999888877766653

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.48  E-value=0.00017  Score=72.71  Aligned_cols=235  Identities=9%  Similarity=-0.020  Sum_probs=141.1

Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeC-------------------CccceEEEeeeeecCCCEEEEE
Q 004214          242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG-------------------HSEIVLCLDTCALSSGKILIVT  302 (768)
Q Consensus       242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-------------------~~~~v~~l~~~~~~~~~~~l~~  302 (768)
                      ..++++.+ ++.++.++..++.|..|+..++........                   ....+.++.  +.+.++. |+.
T Consensus        21 p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~--~~~~~g~-l~v   96 (322)
T 2fp8_A           21 PNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDIS--YNLQNNQ-LYI   96 (322)
T ss_dssp             CCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEE--EETTTTE-EEE
T ss_pred             ceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEE--EcCCCCc-EEE
Confidence            34556654 566677888889999999876544321110                   012356664  5543555 555


Q ss_pred             EeCCCeEEEEeCCCceEEEeee---c-ccCcEEEEEEec-CCCcEEEEEeC-----------------CCeEEEEeCCCC
Q 004214          303 GSKDNSVRLWDSESRCCVGVGT---G-HMGAVGAVAFSK-KLQNFLVSGSS-----------------DHTIKVWSFDGL  360 (768)
Q Consensus       303 ~~~dg~i~iwd~~~~~~~~~~~---~-~~~~v~~~~~~~-~~~~~l~s~~~-----------------dg~i~iwd~~~~  360 (768)
                      +...+.|..+|..++.......   + .......+++.+ +|. +.++-..                 ++.|..||....
T Consensus        97 ~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence            5555668889887664322111   1 123467899999 875 4444322                 366777776432


Q ss_pred             CCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCc--eEEEEeccCCCeEEEEEccCCCEE
Q 004214          361 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLPDLV--SVVTFRGHKRGIWSVEFSPVDQVV  437 (768)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l  437 (768)
                      .           ...........+.++++|+++.|.++ +..+.|.+|++....  ....+..... ...+++.++|++.
T Consensus       176 ~-----------~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~  243 (322)
T 2fp8_A          176 E-----------TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFW  243 (322)
T ss_dssp             E-----------EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEE
T ss_pred             E-----------EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEE
Confidence            1           11111112345789999999866655 556889999987521  1122221223 7789999999877


Q ss_pred             EEeeC----------CCcEEEEeCCCCceeEEeecCC----CcEEEEEEEeCCCEEEEEeCCCcEEEEECCC
Q 004214          438 ITASG----------DKTIKIWSISDGSCLKTFEGHT----SSVLRASFLTRGAQIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       438 ~t~~~----------d~~i~iwd~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  495 (768)
                      ++...          .+.|..+|. .++.+..+....    ..++.+++ .+++..++....+.|.++++..
T Consensus       244 va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          244 VSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             EEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            76644          467888886 577777776442    34666666 4665555555677888888753

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.47  E-value=8e-05  Score=69.63  Aligned_cols=180  Identities=13%  Similarity=0.067  Sum_probs=122.4

Q ss_pred             eEEEeeeeecCCCEEEEEEeCC--CeEEEEeCCCceEEEeeecccCcE-EEEEEecCCCcEEEEEeCCCeEEEEeCCCCC
Q 004214          285 VLCLDTCALSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS  361 (768)
Q Consensus       285 v~~l~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  361 (768)
                      ...+.  +. + +.++.+.+.+  ..|+.+|+.+++.+.......... ..+++.  +..+.+..-.++.+.+||..+. 
T Consensus        23 tqGL~--~~-~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl-   95 (243)
T 3mbr_X           23 TEGLF--YL-R-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATL-   95 (243)
T ss_dssp             EEEEE--EE-T-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTT-
T ss_pred             cccEE--EE-C-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcC-
Confidence            44554  33 3 4556666665  489999999999988776443321 233443  4556666677899999998743 


Q ss_pred             CCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccC-----CCeEEEEEccCCCE
Q 004214          362 DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK-----RGIWSVEFSPVDQV  436 (768)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~v~~s~~~~~  436 (768)
                               +....+.... .  ...+++++..|+.+..++.|.++|..+.+.+.++.-..     ..++.+.+. +|++
T Consensus        96 ---------~~~~ti~~~~-~--Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l  162 (243)
T 3mbr_X           96 ---------TPRARFRYPG-E--GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL  162 (243)
T ss_dssp             ---------EEEEEEECSS-C--CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             ---------cEEEEEeCCC-C--ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence                     2333332222 2  23334667777777778899999999999888776432     245566665 5776


Q ss_pred             EEEeeCCCcEEEEeCCCCceeEEeecC-------------CCcEEEEEEEeCCCEEEEEeC
Q 004214          437 VITASGDKTIKIWSISDGSCLKTFEGH-------------TSSVLRASFLTRGAQIVSCGA  484 (768)
Q Consensus       437 l~t~~~d~~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~s~~~  484 (768)
                      .+....+..|.+.|..+|+.+..+...             ....+.+++.|+++.|++.+.
T Consensus       163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            666656789999999999999887621             135688999998888777664

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.46  E-value=0.0017  Score=65.02  Aligned_cols=295  Identities=13%  Similarity=0.128  Sum_probs=188.3

Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN  341 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  341 (768)
                      .+|.|.|+..+..+..-+-..+  .++   ..|..+. ++.-. ..++.++|+++...+..+.-....+ -=.|-.+ . 
T Consensus        48 ~~vvIiDl~~~~~~~rrpi~Ad--sAI---MnP~~~i-iALra-g~~lQiFnle~K~klks~~~~e~Vv-fWkWis~-~-  117 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRPISAD--SAI---MNPASKV-IALKA-GKTLQIFNIEMKSKMKAHTMTDDVT-FWKWISL-N-  117 (494)
T ss_dssp             CEEEEEETTSTTSCEEEECCCS--EEE---ECSSSSC-EEEEE-TTEEEEEETTTTEEEEEEECSSCCC-EEEEEET-T-
T ss_pred             CeEEEEECCCCCcceecccccc--eee---eCCCCcE-EEEec-CCeEEEEchHHhhhhcceecCCCce-EEEecCC-C-
Confidence            4789999988665533222111  111   3344443 44443 7899999999999988877655443 3344333 2 


Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeecc----CCCeEEEEEccCCCEEEEEeC-------CCcEEEEeCC
Q 004214          342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH----GKDINSLAVAPNDSLVCTGSQ-------DRTACVWRLP  410 (768)
Q Consensus       342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~-------dg~i~i~d~~  410 (768)
                      .|+-. .+..|.-|++.+..         .+...+..|    ...|.....+++.++++..+-       .|.+.+|..+
T Consensus       118 ~l~lV-T~taVyHWsi~~~s---------~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e  187 (494)
T 1bpo_A          118 TVALV-TDNAVYHWSMEGES---------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD  187 (494)
T ss_dssp             EEEEE-CSSEEEEEESSSSC---------CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred             eEEEE-cCCeeEEecccCCC---------CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc
Confidence            33333 35689999997521         122222222    467788888899998775442       3678899876


Q ss_pred             CCceEEEEeccCCCeEEEEEccCC---CEEEEeeC---CCcEEEEeCCCC---ce---eEE---ee---cCCCcEEEEEE
Q 004214          411 DLVSVVTFRGHKRGIWSVEFSPVD---QVVITASG---DKTIKIWSISDG---SC---LKT---FE---GHTSSVLRASF  472 (768)
Q Consensus       411 ~~~~~~~~~~~~~~v~~v~~s~~~---~~l~t~~~---d~~i~iwd~~~~---~~---~~~---~~---~~~~~v~~~~~  472 (768)
                      .. ....+.||......+.+..+.   ++++.+..   .+.++|-++...   .+   .+.   +.   ...+...++..
T Consensus       188 r~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv  266 (494)
T 1bpo_A          188 RK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI  266 (494)
T ss_dssp             TC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE
T ss_pred             cc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe
Confidence            54 445577776655444433211   23333333   278999998542   11   111   11   22455667888


Q ss_pred             EeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHHHHHHHH---HH
Q 004214          473 LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRK---EE  549 (768)
Q Consensus       473 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~---~~  549 (768)
                      ++.-..++.-+.-|.|++||+.+|.++..-+-...+|..-+-+....-++.....|.|.--.++......-....   .+
T Consensus       267 s~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivpyi~~~l~n~~  346 (494)
T 1bpo_A          267 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPD  346 (494)
T ss_dssp             ETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHHHHHHTTCCHH
T ss_pred             cccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccchhhhhhccCCHH
Confidence            988888999999999999999999999988877888887777777777788889998888777766544322211   00


Q ss_pred             -------------HHHHhhhHHHHhhcccchHHHHHHHhhc
Q 004214          550 -------------EAVLRGQELENAVLDADYTKAIQVAFEL  577 (768)
Q Consensus       550 -------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~  577 (768)
                                   ......++++.++..++|.+|-..|...
T Consensus       347 lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~s  387 (494)
T 1bpo_A          347 LALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANA  387 (494)
T ss_dssp             HHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence                         0112345678888999999999888754

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.46  E-value=0.00014  Score=69.21  Aligned_cols=201  Identities=12%  Similarity=0.152  Sum_probs=130.8

Q ss_pred             eecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC
Q 004214          323 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR  402 (768)
Q Consensus       323 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  402 (768)
                      +.+-...+..++++|++..++++...++.|...|.. +.        . .......-....-.+++.+++.++++.-.++
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~--------v-~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~   91 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD--------L-IRTIPLDFVKDLETIEYIGDNQFVISDERDY   91 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC--------E-EEEEECSSCSSEEEEEECSTTEEEEEETTTT
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC--------E-EEEEecCCCCChHHeEEeCCCEEEEEECCCC
Confidence            445556799999999877677778888988888876 21        1 1111112235778899999998777766778


Q ss_pred             cEEEEeCCCCce---EEEEe------ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC---CCceeEEee-------cC
Q 004214          403 TACVWRLPDLVS---VVTFR------GHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS---DGSCLKTFE-------GH  463 (768)
Q Consensus       403 ~i~i~d~~~~~~---~~~~~------~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~---~~~~~~~~~-------~~  463 (768)
                      .+.++++.....   +....      ........++|+|.++.|+++.+.....||.+.   ....+..+.       .+
T Consensus        92 ~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~  171 (255)
T 3qqz_A           92 AIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT  171 (255)
T ss_dssp             EEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC
T ss_pred             cEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc
Confidence            899998765442   22221      134456899999999877777766555666553   111222221       12


Q ss_pred             CCcEEEEEEEeCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCC---------CcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004214          464 TSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTGECIATYDKHE---------DKIWALAVGKKTEMFATGGSDALVNLW  533 (768)
Q Consensus       464 ~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~l~~s~~~~~l~s~~~dg~v~vw  533 (768)
                      ...+..+++.|... +++.+..++.|.++|.. |+.+..+.-..         ...-.|+|.++|+..++ ++-..++.+
T Consensus       172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f  249 (255)
T 3qqz_A          172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF  249 (255)
T ss_dssp             SSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred             cCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence            34567899998655 55566667789999964 66666554222         24678999999985555 666655555


Q ss_pred             Ec
Q 004214          534 HD  535 (768)
Q Consensus       534 ~~  535 (768)
                      ..
T Consensus       250 ~~  251 (255)
T 3qqz_A          250 TP  251 (255)
T ss_dssp             EC
T ss_pred             Ee
Confidence            43

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.46  E-value=0.0004  Score=69.25  Aligned_cols=137  Identities=9%  Similarity=0.044  Sum_probs=83.3

Q ss_pred             CCEEEEEEeCCCeEEEEeCCCceE-EEeee---------cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCc
Q 004214          296 GKILIVTGSKDNSVRLWDSESRCC-VGVGT---------GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE  365 (768)
Q Consensus       296 ~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~---------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  365 (768)
                      +..++++...+|.|..+|..++.. +....         ........+  +++++.++++-...+.|..|++.....   
T Consensus       127 ~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~---  201 (306)
T 2p4o_A          127 DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDK---  201 (306)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSC---
T ss_pred             CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCC---
Confidence            344345544678888888876431 11000         111233445  788776777777889999999874110   


Q ss_pred             cccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEE--EEeccCCCeEEEEEc---cCCCEEEEe
Q 004214          366 QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV--TFRGHKRGIWSVEFS---PVDQVVITA  440 (768)
Q Consensus       366 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~v~~s---~~~~~l~t~  440 (768)
                          ........ .......++++++|+++++....+.|.+++.. ++...  .+.......++++|.   |+++.|+++
T Consensus       202 ----~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt  275 (306)
T 2p4o_A          202 ----PGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV  275 (306)
T ss_dssp             ----BCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred             ----CCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEE
Confidence                00111111 11345778999999887777778899999975 55432  222233568999998   887777666


Q ss_pred             eCC
Q 004214          441 SGD  443 (768)
Q Consensus       441 ~~d  443 (768)
                      +..
T Consensus       276 ~~~  278 (306)
T 2p4o_A          276 TNG  278 (306)
T ss_dssp             ECT
T ss_pred             CCC
Confidence            553

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.44  E-value=0.0018  Score=66.99  Aligned_cols=250  Identities=11%  Similarity=-0.037  Sum_probs=157.9

Q ss_pred             CceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc----eeeeee
Q 004214          203 QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM----SCSYVL  278 (768)
Q Consensus       203 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~----~~~~~~  278 (768)
                      ..++..+..+.|+..++.....        ..+......+..++|.+.++.++.+-...+.|+.+++...    .....+
T Consensus        83 ~~~ll~~~~~~I~~i~l~~~~~--------~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~  154 (400)
T 3p5b_L           83 IAYLFFTNRHEVRKMTLDRSEY--------TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI  154 (400)
T ss_dssp             SCEEEEEETTEEEEECTTSCSC--------EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE
T ss_pred             cceeEEeccceeEEEccCCcce--------eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE
Confidence            3455666667777777654321        1112334567889998767766666667788999988752    223333


Q ss_pred             eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeC-CCeEEEEeC
Q 004214          279 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS-DHTIKVWSF  357 (768)
Q Consensus       279 ~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~  357 (768)
                      .........++  ....++.+.++-...+.|.+.++........+.........+++.|.+..++++-.. .+.|...++
T Consensus       155 ~~~~~~p~gla--vD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~  232 (400)
T 3p5b_L          155 SRDIQAPDGLA--VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  232 (400)
T ss_dssp             CSSCSCEEEEE--EETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred             eCCCCCcccEE--EEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence            33344556665  555566667777778899999998766555555445567899999976655555433 477888887


Q ss_pred             CCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceEEEEec--cCCCeEEEEEccCC
Q 004214          358 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVVTFRG--HKRGIWSVEFSPVD  434 (768)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~--~~~~v~~v~~s~~~  434 (768)
                      +...          ........-...+.|+++|++..|..+. ..+.|..+|+...........  .-.....+++. .+
T Consensus       233 dG~~----------~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~  301 (400)
T 3p5b_L          233 NGVD----------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-ED  301 (400)
T ss_dssp             TSCS----------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TT
T ss_pred             CCCc----------cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CC
Confidence            6431          1111122235678999998777666664 457899999865443333332  22345577773 35


Q ss_pred             CEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEE
Q 004214          435 QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL  473 (768)
Q Consensus       435 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  473 (768)
                      .++++-...+.|..+|..+|+.+..+.........+...
T Consensus       302 ~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~  340 (400)
T 3p5b_L          302 KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF  340 (400)
T ss_dssp             EEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEE
T ss_pred             EEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEE
Confidence            566666677889999988888887777555556666554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.40  E-value=2.5e-05  Score=87.28  Aligned_cols=273  Identities=11%  Similarity=0.029  Sum_probs=148.6

Q ss_pred             EEEEecCCCCEEEEEeCCC-----------cEEEEECCCceeee--eeeC-CccceEEEeeeeecCCCEEEEEEe-CCCe
Q 004214          244 DLKFLGEEEQYLAVATNIE-----------QVQVYDLSSMSCSY--VLAG-HSEIVLCLDTCALSSGKILIVTGS-KDNS  308 (768)
Q Consensus       244 ~~~~~~~~~~~l~~~~~~~-----------~i~i~d~~~~~~~~--~~~~-~~~~v~~l~~~~~~~~~~~l~~~~-~dg~  308 (768)
                      .+++.+.++.+++.|+.+.           .+.+||..+++...  .+.. +.....+..  +..++.. ++.|+ .++.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~--~~~~g~l-yv~GG~~~~~  266 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGIS--MDGNGQI-VVTGGNDAKK  266 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEE--ECTTSCE-EEECSSSTTC
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcccccc--CCCCCCE-EEeCCCCCCc
Confidence            4555554777888876532           58889988776432  2221 111111221  3345554 66666 4568


Q ss_pred             EEEEeCCCceEEEeeecccCc-EEEEEEecCCCcEEEEEe-CC-----CeEEEEeCCCCCCCCccccccceeeEeeccCC
Q 004214          309 VRLWDSESRCCVGVGTGHMGA-VGAVAFSKKLQNFLVSGS-SD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK  381 (768)
Q Consensus       309 i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~-~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  381 (768)
                      +.+||..+++.......+... -.+++..++++ +++.|+ .+     ..+.+||.....-.........+... ..+  
T Consensus       267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~-~~~--  342 (656)
T 1k3i_A          267 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLT-ADK--  342 (656)
T ss_dssp             EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCC-CCT--
T ss_pred             eEEecCcCCceeECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccc-ccc--
Confidence            999999887655443322222 13445556755 677777 34     56889998643100000000000000 000  


Q ss_pred             CeEEEEEccCCCEEEEEeCCC---------cEEEEeCCCCceEEEEeccC---------CCeEEEEEcc-CCCEEEEeeC
Q 004214          382 DINSLAVAPNDSLVCTGSQDR---------TACVWRLPDLVSVVTFRGHK---------RGIWSVEFSP-VDQVVITASG  442 (768)
Q Consensus       382 ~i~~~~~s~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~---------~~v~~v~~s~-~~~~l~t~~~  442 (768)
                         ...+..++..++.|+.+|         .+..||..+..-......+.         ..-.++.|.. ++++++.|+.
T Consensus       343 ---~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~  419 (656)
T 1k3i_A          343 ---QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS  419 (656)
T ss_dssp             ---TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred             ---cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCC
Confidence               011224555556665444         46788887765333222221         1234455543 6788888875


Q ss_pred             CC-----------cEEEEeCCCCceeEEe--ecCCCcE-EEEEEEeCCCEEEEEeCC-----------CcEEEEECCCCe
Q 004214          443 DK-----------TIKIWSISDGSCLKTF--EGHTSSV-LRASFLTRGAQIVSCGAD-----------GLVKLWTVRTGE  497 (768)
Q Consensus       443 d~-----------~i~iwd~~~~~~~~~~--~~~~~~v-~~~~~s~~~~~l~s~~~d-----------g~i~iwd~~~~~  497 (768)
                      ++           .|.+||..+..-....  ..+.... .+++..|+|+.++.|+.+           ..+.+||..+++
T Consensus       420 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          420 PDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             SSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred             CCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence            32           6888888776544332  2122222 344566899999999864           468999998876


Q ss_pred             EEEEe--ccCCCcEEEEEEcCCCCEEEEEeC
Q 004214          498 CIATY--DKHEDKIWALAVGKKTEMFATGGS  526 (768)
Q Consensus       498 ~~~~~--~~~~~~v~~l~~s~~~~~l~s~~~  526 (768)
                      ....-  ........+..+.|+++.++.||.
T Consensus       500 W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          500 FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             eeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            43321  111112234456799999999985

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.37  E-value=0.00041  Score=69.17  Aligned_cols=225  Identities=8%  Similarity=0.012  Sum_probs=132.1

Q ss_pred             eEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC-C-eEEEEeCCCCCC
Q 004214          285 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-H-TIKVWSFDGLSD  362 (768)
Q Consensus       285 v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g-~i~iwd~~~~~~  362 (768)
                      ...++  +.+++. ++++...++.|..||..... ..... .......+++.+++. ++++.... + .|..++...+. 
T Consensus        34 pegia--~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~~~~-~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~-  106 (306)
T 2p4o_A           34 LENLA--SAPDGT-IFVTNHEVGEIVSITPDGNQ-QIHAT-VEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGT-  106 (306)
T ss_dssp             EEEEE--ECTTSC-EEEEETTTTEEEEECTTCCE-EEEEE-CSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSC-
T ss_pred             cceEE--ECCCCC-EEEEeCCCCeEEEECCCCce-EEEEe-CCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCe-
Confidence            44554  555554 46666678899999987643 32222 235688999999977 55554332 2 46556654331 


Q ss_pred             CCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCce-EEEEec---------cCCCeEEEEEcc
Q 004214          363 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS-VVTFRG---------HKRGIWSVEFSP  432 (768)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~---------~~~~v~~v~~s~  432 (768)
                             ...... .........++..+++..+++-..++.|+++|..++.. +....+         .-.....+  +|
T Consensus       107 -------~~~~~~-~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~  176 (306)
T 2p4o_A          107 -------VETLLT-LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR  176 (306)
T ss_dssp             -------EEEEEE-CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred             -------EEEEEe-CCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence                   111111 01122334555566555555554688999999876432 111111         11234445  78


Q ss_pred             CCCEEEEe-eCCCcEEEEeCCC-Cce--eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCC
Q 004214          433 VDQVVITA-SGDKTIKIWSISD-GSC--LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA--TYDKHE  506 (768)
Q Consensus       433 ~~~~l~t~-~~d~~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~  506 (768)
                      +++.|+.+ ...+.|..|++.. +..  ...+.. ......+++.++|++.++....+.|.+++.. |+...  .+...-
T Consensus       177 dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~  254 (306)
T 2p4o_A          177 FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV  254 (306)
T ss_dssp             ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred             CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence            88755544 4568899999864 332  122211 1234568899999887777777899999975 66532  344333


Q ss_pred             CcEEEEEEc---CCCCEEEEEeCCC
Q 004214          507 DKIWALAVG---KKTEMFATGGSDA  528 (768)
Q Consensus       507 ~~v~~l~~s---~~~~~l~s~~~dg  528 (768)
                      ...++++|.   |++..|..++..+
T Consensus       255 ~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          255 IGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CCceEEEEecccCCCCEEEEECCCC
Confidence            568999998   8887777665443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.31  E-value=0.00026  Score=67.27  Aligned_cols=208  Identities=10%  Similarity=0.122  Sum_probs=131.9

Q ss_pred             eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeC-CccceEEEeeeeecCCCEEEEEEeCCCeEEE
Q 004214          233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG-HSEIVLCLDTCALSSGKILIVTGSKDNSVRL  311 (768)
Q Consensus       233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~i  311 (768)
                      +.+.+....+..++|.+.++.++++...++.|..+|.. ++..+.+.- .....-.++  +..++ .++++.-.++.+.+
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa--~~~~g-~~~vs~E~~~~l~~   95 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIE--YIGDN-QFVISDERDYAIYV   95 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEE--ECSTT-EEEEEETTTTEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeE--EeCCC-EEEEEECCCCcEEE
Confidence            56778888999999998777788888889999999998 777776632 224455665  44444 44566667788999


Q ss_pred             EeCCCceE---EEeee------cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceee----Eeec
Q 004214          312 WDSESRCC---VGVGT------GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA----VVAA  378 (768)
Q Consensus       312 wd~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~  378 (768)
                      +++.....   +....      ........++++|.+..+++ +.......+|.+.......    ......    ....
T Consensus        96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-a~E~~p~~i~~~~g~~~~~----~l~i~~~~~~~~~~  170 (255)
T 3qqz_A           96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-FKEKNPIEVYKVNGLLSSN----ELHISKDKALQRQF  170 (255)
T ss_dssp             EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-EEESSSEEEEEEESTTCSS----CCEEEECHHHHHTC
T ss_pred             EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE-EECcCCceEEEEcccccCC----ceeeecchhhcccc
Confidence            88764332   22221      13345689999999775554 4444444555554211100    000000    0011


Q ss_pred             cCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEeccC---------CCeEEEEEccCCCEEEEeeCCCcEEE
Q 004214          379 HGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK---------RGIWSVEFSPVDQVVITASGDKTIKI  448 (768)
Q Consensus       379 ~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~v~~v~~s~~~~~l~t~~~d~~i~i  448 (768)
                      +-..+.+++++| .+++++....++.+..+|.. ++.+..+.-..         .....|+|.++|++.++ ++-+.+++
T Consensus       171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~  248 (255)
T 3qqz_A          171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYR  248 (255)
T ss_dssp             CSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEE
T ss_pred             ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEE
Confidence            234678999999 46667777777889999965 44555444221         25689999999985555 66666666


Q ss_pred             EeC
Q 004214          449 WSI  451 (768)
Q Consensus       449 wd~  451 (768)
                      |.-
T Consensus       249 f~~  251 (255)
T 3qqz_A          249 FTP  251 (255)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.31  E-value=0.0016  Score=64.84  Aligned_cols=249  Identities=13%  Similarity=0.041  Sum_probs=149.1

Q ss_pred             eEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceee-eeeeCCcc
Q 004214          205 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS-YVLAGHSE  283 (768)
Q Consensus       205 l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~-~~~~~~~~  283 (768)
                      ++..+....|..+++...... .....     .....+..+.|.+.++.++.+-...+.|..++....... ..+...-.
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~-~~~~~-----~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~   79 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKEN-ATIVV-----GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLL   79 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSC-CEEEE-----EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCS
T ss_pred             EEEEEccCeEEEEECCCCceE-EEEEe-----cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCC
Confidence            344555667777776544211 11111     111245678888767777777777788999998766422 12222222


Q ss_pred             ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEe-CCCeEEEEeCCCCCC
Q 004214          284 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWSFDGLSD  362 (768)
Q Consensus       284 ~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~  362 (768)
                      ....++  +...++.++++-...+.|.++++..................+++.|.+..++++-. ..+.|...+++... 
T Consensus        80 ~p~gla--vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-  156 (318)
T 3sov_A           80 SPDGLA--CDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-  156 (318)
T ss_dssp             CCCEEE--EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-
T ss_pred             CccEEE--EEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-
Confidence            334454  44556666677677789999998765433333344456789999987664455442 35788888876421 


Q ss_pred             CCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee
Q 004214          363 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS  441 (768)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~  441 (768)
                               ........-...+.++++|++..|..+. ..+.|..+|+..........+.......+++.. +.++.+-.
T Consensus       157 ---------~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~  226 (318)
T 3sov_A          157 ---------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDW  226 (318)
T ss_dssp             ---------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEET
T ss_pred             ---------eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEec
Confidence                     1111111224568999999666655554 567899999865433333333344566777753 45666666


Q ss_pred             CCCcEEEEeCCCCceeEEeecCCCcEEEEEE
Q 004214          442 GDKTIKIWSISDGSCLKTFEGHTSSVLRASF  472 (768)
Q Consensus       442 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  472 (768)
                      ..+.|..++..+|+....+.........++.
T Consensus       227 ~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v  257 (318)
T 3sov_A          227 STHSILACNKYTGEGLREIHSDIFSPMDIHA  257 (318)
T ss_dssp             TTTEEEEEETTTCCSCEEEECCCSSCCCEEE
T ss_pred             CCCeEEEEECCCCCceEEEeCCCCCCcEEEE
Confidence            7789999999888877776543333344443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.25  E-value=0.00061  Score=71.30  Aligned_cols=232  Identities=9%  Similarity=0.074  Sum_probs=134.5

Q ss_pred             eec-CCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCC----eEEEEeCCCCCCCCcc
Q 004214          292 ALS-SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH----TIKVWSFDGLSDDAEQ  366 (768)
Q Consensus       292 ~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~  366 (768)
                      +.+ +++. |+.+...+.|+.+|+.++....... .......+++++++..++++...++    .+..++....      
T Consensus       144 vdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~------  215 (430)
T 3tc9_A          144 FDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG------  215 (430)
T ss_dssp             EETTEEEE-EEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT------
T ss_pred             ECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc------
Confidence            444 3455 4444444889999998876554433 4556789999999774555544322    2333433211      


Q ss_pred             ccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEec-cCCCeEEEEEccCCCEE-EEeeCC
Q 004214          367 PMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVV-ITASGD  443 (768)
Q Consensus       367 ~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l-~t~~~d  443 (768)
                         ......+. .......++++| ++.++++-..++.|..|+..++........ .......++|+|+|++| ++-...
T Consensus       216 ---~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~  291 (430)
T 3tc9_A          216 ---FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ  291 (430)
T ss_dssp             ---SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred             ---eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence               00001111 234567889999 777777766788999999887654222221 22346789999999954 455567


Q ss_pred             CcEEEEeCCC--Cce--eEEeecC---------------CCcEE-EEEEE--------eCCCEEEEEeCCCcEEEEECCC
Q 004214          444 KTIKIWSISD--GSC--LKTFEGH---------------TSSVL-RASFL--------TRGAQIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       444 ~~i~iwd~~~--~~~--~~~~~~~---------------~~~v~-~~~~s--------~~~~~l~s~~~dg~i~iwd~~~  495 (768)
                      +.|..++...  +..  +..+.+.               -.... .++..        ++|.+.++=...+.|+.++ .+
T Consensus       292 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~  370 (430)
T 3tc9_A          292 HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQ  370 (430)
T ss_dssp             TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TT
T ss_pred             CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CC
Confidence            8899987653  221  2222221               11123 34443        2344444444566888888 45


Q ss_pred             CeEEEEecc----C-------------CCcEEEEEEcCC-CCEEEEEeCCCcEEEEEcC
Q 004214          496 GECIATYDK----H-------------EDKIWALAVGKK-TEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       496 ~~~~~~~~~----~-------------~~~v~~l~~s~~-~~~l~s~~~dg~v~vw~~~  536 (768)
                      |........    .             -.....++++|+ +.++++-..+..|+.++++
T Consensus       371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            654333211    0             114789999994 6666666667778777653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.24  E-value=0.0014  Score=73.61  Aligned_cols=233  Identities=12%  Similarity=0.055  Sum_probs=145.6

Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCc----eEEEeeecccCc
Q 004214          254 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR----CCVGVGTGHMGA  329 (768)
Q Consensus       254 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~  329 (768)
                      +|+.+ +...|+..++........+.. ...+..++  +...++.++++-...+.|+.+++...    .....+......
T Consensus       397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~--~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~  472 (791)
T 3m0c_C          397 YLFFT-NRHEVRKMTLDRSEYTSLIPN-LRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA  472 (791)
T ss_dssp             EEEEE-CBSSEEEECTTSCCCEEEECS-CSSEEEEE--EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred             ccccc-cccceeEeeccCCcceeeecC-CCceEEEe--ecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCC
Confidence            44443 446788888876655544443 44556676  66666776777777788999988753    223333334455


Q ss_pred             EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-C-CcEEEE
Q 004214          330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-D-RTACVW  407 (768)
Q Consensus       330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d-g~i~i~  407 (768)
                      ...|++.+.+.+++++-...+.|.+.++....          ..............|+++|.+..|+.+.. . +.|...
T Consensus       473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~----------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~  542 (791)
T 3m0c_C          473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  542 (791)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSS----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             cceeeeeecCCcEEEEecCCCeEEEEeCCCCe----------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence            67899998877778888888999999987431          12222233456889999997666665553 2 678888


Q ss_pred             eCCCCceEEEEeccCCCeEEEEEccCCCEEEEe-eCCCcEEEEeCCCCceeEEeec--CCCcEEEEEEEeCCCEEEEEe-
Q 004214          408 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEG--HTSSVLRASFLTRGAQIVSCG-  483 (768)
Q Consensus       408 d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~-  483 (768)
                      ++........+...-.....|++++.+..|+.+ ...+.|..+++........+..  .-.....|++  ++.+|+.+. 
T Consensus       543 ~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~  620 (791)
T 3m0c_C          543 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDI  620 (791)
T ss_dssp             ETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEET
T ss_pred             ecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEEC
Confidence            886544444444344578899999876666655 4457899999854433333332  1223445555  344565554 


Q ss_pred             CCCcEEEEECCCCeEEEEe
Q 004214          484 ADGLVKLWTVRTGECIATY  502 (768)
Q Consensus       484 ~dg~i~iwd~~~~~~~~~~  502 (768)
                      ..+.|...+..+|+.+..+
T Consensus       621 ~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          621 INEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             TTTEEEEEETTTCCCCEEE
T ss_pred             CCCEEEEEeCCCCcceEEe
Confidence            4567888887777655444

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.17  E-value=0.001  Score=69.62  Aligned_cols=230  Identities=13%  Similarity=0.069  Sum_probs=138.3

Q ss_pred             eecC--CCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC---Ce-EEEEeCCCCCCCCc
Q 004214          292 ALSS--GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD---HT-IKVWSFDGLSDDAE  365 (768)
Q Consensus       292 ~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~-i~iwd~~~~~~~~~  365 (768)
                      +.++  ++. |+.+...+.|+.+|..++....... .......+++++++. ++++....   .. +...+....     
T Consensus       146 vd~~s~~g~-Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~-----  217 (433)
T 4hw6_A          146 FDPNSNYDD-LYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG-----  217 (433)
T ss_dssp             ECTTTTTCE-EEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT-----
T ss_pred             EccccCCCE-EEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC-----
Confidence            4452  455 4444444899999998887665443 445688999999987 55554422   11 222222111     


Q ss_pred             cccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEec--cCCCeEEEEEccCCCEEE-Eee
Q 004214          366 QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRG--HKRGIWSVEFSPVDQVVI-TAS  441 (768)
Q Consensus       366 ~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~v~~s~~~~~l~-t~~  441 (768)
                          ...... .........++++| +|.++++-..++.|+.++..++.....+..  ....-..++|+|+++.|+ +-.
T Consensus       218 ----~~~~~~-~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~  292 (433)
T 4hw6_A          218 ----FTERLS-LCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN  292 (433)
T ss_dssp             ----TCCEEE-EEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred             ----eecccc-ccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence                000011 11334567789999 677666666778899999887765332221  122234699999998554 445


Q ss_pred             CCCcEEEEeCC--CCce--eEEeecC---------------CCcEEEEEE---------EeCCCEEEEEeCCCcEEEEEC
Q 004214          442 GDKTIKIWSIS--DGSC--LKTFEGH---------------TSSVLRASF---------LTRGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       442 ~d~~i~iwd~~--~~~~--~~~~~~~---------------~~~v~~~~~---------s~~~~~l~s~~~dg~i~iwd~  493 (768)
                      ..+.|+.++..  ++..  ...+.+.               -.....+++         .++|++.++-...+.|+.++.
T Consensus       293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            56889998865  2321  1222221               123567888         566666666556778999985


Q ss_pred             CCCeEEEEeccC------------------CCcEEEEEEc-CCCCEEEEEeCCCcEEEEEcC
Q 004214          494 RTGECIATYDKH------------------EDKIWALAVG-KKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       494 ~~~~~~~~~~~~------------------~~~v~~l~~s-~~~~~l~s~~~dg~v~vw~~~  536 (768)
                       +|... ++.+.                  -.....|+++ ++|.++++-..++.|+.++++
T Consensus       373 -~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          373 -EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             -TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             -CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence             56443 33221                  1236789999 677777776677778877654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.10  E-value=8.8e-05  Score=82.89  Aligned_cols=236  Identities=11%  Similarity=0.054  Sum_probs=131.2

Q ss_pred             eecCCCEEEEEEeCCC-----------eEEEEeCCCceEEEe--e-ecccCcEEEEEEecCCCcEEEEEe-CCCeEEEEe
Q 004214          292 ALSSGKILIVTGSKDN-----------SVRLWDSESRCCVGV--G-TGHMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWS  356 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~~l~s~~-~dg~i~iwd  356 (768)
                      +.+.++.+++.|+.++           .+.+||..+++....  + ..+.....++++..++. +++.|+ .+..+.+||
T Consensus       193 v~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~~yd  271 (656)
T 1k3i_A          193 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYD  271 (656)
T ss_dssp             EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEE
T ss_pred             EEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceEEec
Confidence            4453455577776542           588999987654322  2 12333334567777765 777777 456899999


Q ss_pred             CCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CC-----CcEEEEeCCCCceEEEE----eccCCCeE
Q 004214          357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QD-----RTACVWRLPDLVSVVTF----RGHKRGIW  426 (768)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~----~~~~~~v~  426 (768)
                      .....        ....... .....-.++++.+++++++.|+ .+     ..+.+||..+.+-...-    ......-.
T Consensus       272 ~~t~~--------W~~~~~~-~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~  342 (656)
T 1k3i_A          272 SSSDS--------WIPGPDM-QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK  342 (656)
T ss_dssp             GGGTE--------EEECCCC-SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT
T ss_pred             CcCCc--------eeECCCC-CccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc
Confidence            76431        1111000 0111123456667999999998 44     46999999876532210    00000000


Q ss_pred             EEEEccCCCEEEEeeCC---------CcEEEEeCCCCceeEEeecCC---------CcEEEEEEEe-CCCEEEEEeCCC-
Q 004214          427 SVEFSPVDQVVITASGD---------KTIKIWSISDGSCLKTFEGHT---------SSVLRASFLT-RGAQIVSCGADG-  486 (768)
Q Consensus       427 ~v~~s~~~~~l~t~~~d---------~~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~-~~~~l~s~~~dg-  486 (768)
                      ...+..++..++.|+.+         ..+..||..+.........+.         ..-.++.|.. +++.++.|+.++ 
T Consensus       343 ~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~  422 (656)
T 1k3i_A          343 QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY  422 (656)
T ss_dssp             TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred             cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC
Confidence            01122344554555443         457788887765443332221         1223444543 677778887543 


Q ss_pred             ----------cEEEEECCCCeEEEEe--ccCCCcE-EEEEEcCCCCEEEEEeCC-----------CcEEEEEcCC
Q 004214          487 ----------LVKLWTVRTGECIATY--DKHEDKI-WALAVGKKTEMFATGGSD-----------ALVNLWHDST  537 (768)
Q Consensus       487 ----------~i~iwd~~~~~~~~~~--~~~~~~v-~~l~~s~~~~~l~s~~~d-----------g~v~vw~~~~  537 (768)
                                .|.+||..+.......  ..+.... .+++..|+++.++.||.+           ..+.+||..+
T Consensus       423 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t  497 (656)
T 1k3i_A          423 QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ  497 (656)
T ss_dssp             SSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred             CCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence                      6788888877655443  2233332 345667899999999864           4578888754

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.07  E-value=0.0078  Score=67.62  Aligned_cols=238  Identities=11%  Similarity=-0.029  Sum_probs=145.8

Q ss_pred             eEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc----eeeeeeeC
Q 004214          205 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM----SCSYVLAG  280 (768)
Q Consensus       205 l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~----~~~~~~~~  280 (768)
                      ++..+....|+..++.....        ..+......+..++|...++.++++-...+.|+.+++...    .....+..
T Consensus       397 ~Ll~an~~~Ir~i~l~~~~~--------~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~  468 (791)
T 3m0c_C          397 YLFFTNRHEVRKMTLDRSEY--------TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR  468 (791)
T ss_dssp             EEEEECBSSEEEECTTSCCC--------EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS
T ss_pred             ccccccccceeEeeccCCcc--------eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec
Confidence            44555556666665543211        1122234567788888766666677677788988888753    22333332


Q ss_pred             CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC-CeEEEEeCCC
Q 004214          281 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-HTIKVWSFDG  359 (768)
Q Consensus       281 ~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~  359 (768)
                      .......|+  +...++.++++-...+.|.+.++........+.........|++.|.+..++++-... +.|...++..
T Consensus       469 ~l~~P~GLA--vD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG  546 (791)
T 3m0c_C          469 DIQAPDGLA--VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  546 (791)
T ss_dssp             SCSCCCEEE--EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCCCcceee--eeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence            334455565  5556667677777889999999987655555554555688999999866555554333 7788888864


Q ss_pred             CCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceEEEEecc--CCCeEEEEEccCCCE
Q 004214          360 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVVTFRGH--KRGIWSVEFSPVDQV  436 (768)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~--~~~v~~v~~s~~~~~  436 (768)
                      ..          ........-...+.|++++.+..|+.+. ..+.|..+++........+...  -....+|++.. +.+
T Consensus       547 ~~----------~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~l  615 (791)
T 3m0c_C          547 VD----------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKV  615 (791)
T ss_dssp             CC----------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEE
T ss_pred             Cc----------eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEE
Confidence            31          1112222335688999998766666654 4567999998655444444332  22345666643 345


Q ss_pred             EEEeeCCCcEEEEeCCCCceeEEeecC
Q 004214          437 VITASGDKTIKIWSISDGSCLKTFEGH  463 (768)
Q Consensus       437 l~t~~~d~~i~iwd~~~~~~~~~~~~~  463 (768)
                      +++-...+.|...|..+|+.+..+...
T Consensus       616 YwtD~~~~~I~~~dk~tG~~~~~l~~~  642 (791)
T 3m0c_C          616 FWTDIINEAIFSANRLTGSDVNLLAEN  642 (791)
T ss_dssp             EEEETTTTEEEEEETTTCCCCEEEECS
T ss_pred             EEEECCCCEEEEEeCCCCcceEEeecC
Confidence            555556788888888888777666533

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.07  E-value=0.032  Score=63.44  Aligned_cols=465  Identities=10%  Similarity=0.016  Sum_probs=237.0

Q ss_pred             cEEEEECCCCEEEEEEE-----cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEe-cCc----cceeEEE
Q 004214           11 KVLVWDVDGGFCTHYFK-----GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKH----FSRVTSM   80 (768)
Q Consensus        11 ~i~vwd~~~~~~~~~l~-----gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l-~~h----~~~V~~l   80 (768)
                      -|..+|..++... .+.     -....|.++...++|.   |..|+.+| |..+|..+++..... ...    ...|.++
T Consensus       122 Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~---lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  196 (758)
T 3ott_A          122 GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQ---IYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSL  196 (758)
T ss_dssp             EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCC---EEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEE
T ss_pred             cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCC---EEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEE
Confidence            5777888776643 331     1235688888877765   33455555 778898776543221 111    2248888


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCeeeeeee-cceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCC
Q 004214           81 AITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP-TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER  159 (768)
Q Consensus        81 ~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (768)
                      ...+++..|..+.. +-+..+|..+++...... ....+.++.....+                        .+..++..
T Consensus       197 ~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g------------------------~lWigT~~  251 (758)
T 3ott_A          197 LEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNG------------------------DLLAGTDN  251 (758)
T ss_dssp             EEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTC------------------------CEEEEETT
T ss_pred             EEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCC------------------------CEEEEeCC
Confidence            88887776555554 458889987765432111 12234445444444                        23344444


Q ss_pred             cEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeee--cc
Q 004214          160 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL--VG  237 (768)
Q Consensus       160 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~--~~  237 (768)
                       -+.+++..++.+........   ....-....+.++. ......+.+++..| +.++.... .   .........  ..
T Consensus       252 -Gl~~~~~~~~~~~~~~~~~~---~~~~l~~~~i~~i~-~D~~g~lWiGT~~G-l~~~~~~~-~---~~~~~~~~~~~~~  321 (758)
T 3ott_A          252 -GLYVYHNDTTPLQHIIHDSR---NIQSLTNNIIWNIF-ADQEHNIWLGTDYG-ISLSRYNS-A---LQFIPISQITGTG  321 (758)
T ss_dssp             -EEEEECCTTSCCEEECCCTT---CTTSCSCSCEEEEE-ECTTCCEEEEESSS-EEEECCCC-----CEEEEHHHHSCSC
T ss_pred             -ceeEEecCCCcEEEEEcCCC---CcCcCCcCeEEEEE-EcCCCCEEEEeCCc-ccccccCC-c---eeEEecccCCCCC
Confidence             47778776653321111000   00001112233333 33345566677665 44432211 0   111000000  01


Q ss_pred             cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee--eeeee-------CCccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214          238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC--SYVLA-------GHSEIVLCLDTCALSSGKILIVTGSKDNS  308 (768)
Q Consensus       238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~-------~~~~~v~~l~~~~~~~~~~~l~~~~~dg~  308 (768)
                      ....|.++..  +....+.+|+.. -+..++..++..  ...+.       .....|.++.  ...++ . |..|+ ++-
T Consensus       322 ~~~~v~~i~~--D~~g~lWiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~--~d~~g-~-lWigt-~~G  393 (758)
T 3ott_A          322 DGNQFYSLFR--DSKGFYWFGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIY--EDKEQ-Q-LWIAT-DGS  393 (758)
T ss_dssp             CCCBEEEEEE--CTTCCEEEEETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEE--ECTTS-C-EEEEE-TTE
T ss_pred             CCceEEEEEE--cCCCCEEEeeCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEE--ECCCC-C-EEEEe-CCc
Confidence            1234555554  344456666764 466676654321  11111       1123577764  33444 3 55566 457


Q ss_pred             EEEEeCCCceEEEeee-c-----ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEe---e-c
Q 004214          309 VRLWDSESRCCVGVGT-G-----HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV---A-A  378 (768)
Q Consensus       309 i~iwd~~~~~~~~~~~-~-----~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~-~  378 (768)
                      +..||..+++...... .     ....|.++...+++  .|..|+..+-+..++..........  ........   . .
T Consensus       394 L~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lWigT~~~Gl~~~~~~~~~~~~~~--~~~~~~~~~~~~~l  469 (758)
T 3ott_A          394 INRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG--QLWISTCLGGIFVVDKHKLMQSTSG--QYIAEQNYSVHNGL  469 (758)
T ss_dssp             EEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTS--EEEEEESSSCEEEEEHHHHHHCCSS--EEECSEEECGGGTC
T ss_pred             HhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCC--CEEEEECCCceEEEccccccccCCc--ceeccccccccccc
Confidence            9999998876544321 1     23457888777664  3666777666788874310000000  00000000   0 1


Q ss_pred             cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec---cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 004214          379 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS  455 (768)
Q Consensus       379 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~  455 (768)
                      ....|.++...++|.+.+.++..+-+..+|..+++.......   ....+.++....+|.+.+.. ..| +..||..++.
T Consensus       470 ~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~~~~~~  547 (758)
T 3ott_A          470 SGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRINPKDES  547 (758)
T ss_dssp             SCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEECC--CC
T ss_pred             ccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEecCCCc
Confidence            123588999999998776444445688899877654432111   12467888888888876654 444 8888876654


Q ss_pred             eeEE-eec-CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEc-CCCCEEEEEeCCCcEEE
Q 004214          456 CLKT-FEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVG-KKTEMFATGGSDALVNL  532 (768)
Q Consensus       456 ~~~~-~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s-~~~~~l~s~~~dg~v~v  532 (768)
                      .... ..+ ....|.++.. .+| .|..++..| |..+|..+.+... +......+....+. ++| .|..|+.+|.+. 
T Consensus       548 ~~~~~~~gl~~~~i~~i~~-~~g-~lWi~t~~G-l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G-~l~fG~~~Gl~~-  621 (758)
T 3ott_A          548 QQSISFGSFSNNEILSMTC-VKN-SIWVSTTNG-LWIIDRKTMDARQ-QNMTNKRFTSLLFDPKED-CVYLGGADGFGI-  621 (758)
T ss_dssp             CCBCCCCC---CCEEEEEE-ETT-EEEEEESSC-EEEEETTTCCEEE-C--CCCCCSEEEEETTTT-EEEEECBSEEEE-
T ss_pred             eEEecccCCCccceEEEEE-CCC-CEEEECCCC-eEEEcCCCceeEE-ecCCCCceeeeEEECCCC-cEEEecCCceEE-
Confidence            3211 111 1345777765 355 455555666 7778888765432 22122223334443 455 566677788544 


Q ss_pred             EEc
Q 004214          533 WHD  535 (768)
Q Consensus       533 w~~  535 (768)
                      ++.
T Consensus       622 f~p  624 (758)
T 3ott_A          622 SHS  624 (758)
T ss_dssp             EEC
T ss_pred             ECh
Confidence            444

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.04  E-value=0.012  Score=59.07  Aligned_cols=268  Identities=11%  Similarity=0.049  Sum_probs=142.7

Q ss_pred             CceeEEEEecCCCCEEEEEeCCCcEEEEECCCce---eeee-eeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214          240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS---CSYV-LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE  315 (768)
Q Consensus       240 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---~~~~-~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~  315 (768)
                      ..+.++.|.+ .+..+++ +..|.| +.....++   .+.. .......+.++.  +. + +..++ ++..|.|.. ...
T Consensus        36 ~~~~~v~~~~-~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~--~~-~-~~~~~-~g~~g~i~~-S~D  106 (327)
T 2xbg_A           36 ATILDMSFID-RHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVS--FQ-G-NEGWI-VGEPPIMLH-TTD  106 (327)
T ss_dssp             SCEEEEEESS-SSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEE--EE-T-TEEEE-EEETTEEEE-ESS
T ss_pred             CcEEEEEECC-CCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEE--ec-C-CeEEE-EECCCeEEE-ECC
Confidence            3577777753 3344554 445654 33333332   2211 111234567775  43 3 34344 445665544 223


Q ss_pred             CceEEEeee---cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214          316 SRCCVGVGT---GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND  392 (768)
Q Consensus       316 ~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  392 (768)
                      .++.-....   .+.+.+..+.+.+++. +++ ++.+|.|.. ..+.+.       ...  .........+.++++.|++
T Consensus       107 gG~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~g~v~~-S~DgG~-------tW~--~~~~~~~~~~~~~~~~~~~  174 (327)
T 2xbg_A          107 GGQSWSQIPLDPKLPGSPRLIKALGNGS-AEM-ITNVGAIYR-TKDSGK-------NWQ--ALVQEAIGVMRNLNRSPSG  174 (327)
T ss_dssp             TTSSCEECCCCTTCSSCEEEEEEEETTE-EEE-EETTCCEEE-ESSTTS-------SEE--EEECSCCCCEEEEEECTTS
T ss_pred             CCCCceECccccCCCCCeEEEEEECCCC-EEE-EeCCccEEE-EcCCCC-------CCE--EeecCCCcceEEEEEcCCC
Confidence            233222211   2335577787776643 444 445664422 111111       111  1112334568899999998


Q ss_pred             CEEEEEeCCCcEEE-EeC--CCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee-c---CCC
Q 004214          393 SLVCTGSQDRTACV-WRL--PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-G---HTS  465 (768)
Q Consensus       393 ~~l~~~~~dg~i~i-~d~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-~---~~~  465 (768)
                      .+++++.. |.+.. .|-  .+.+.+.  ......+..+.+.+++++++++ .+|.+++.+...|+.-..+. +   +..
T Consensus       175 ~~~~~g~~-G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~  250 (327)
T 2xbg_A          175 EYVAVSSR-GSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSV  250 (327)
T ss_dssp             CEEEEETT-SSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCS
T ss_pred             cEEEEECC-CcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCc
Confidence            88877654 44443 342  2233332  2345678899999988766554 56888776433233322222 1   223


Q ss_pred             cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc---CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214          466 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK---HEDKIWALAVGKKTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       466 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~  535 (768)
                      .+..+.+.+++..++++. +|.| ++..+.|+.-..+..   +...+.++.|.+++ .+++++.+|.|.-++.
T Consensus       251 ~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          251 GFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             CEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred             ceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence            588899988877666554 6766 455555655444432   34567888887554 4667778897766553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.03  E-value=0.00055  Score=77.56  Aligned_cols=197  Identities=12%  Similarity=0.124  Sum_probs=108.5

Q ss_pred             eEEEeeeee-cCCCEEEEEEeCCC----eEEEEeCCCc-eEEEeeecccCcEEEEEEecCCCcEEEEEeCC----CeEEE
Q 004214          285 VLCLDTCAL-SSGKILIVTGSKDN----SVRLWDSESR-CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD----HTIKV  354 (768)
Q Consensus       285 v~~l~~~~~-~~~~~~l~~~~~dg----~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----g~i~i  354 (768)
                      +....  ++ ++++.+.++...+|    .|+++|+.++ +.+...  -......++|+|+++.++++....    ..|..
T Consensus       176 ~~~~~--~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~--~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          176 VMEVK--PAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK--VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEE--ECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC--EEEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EeeeE--ecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc--ccCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            44444  77 78877555555444    4999999988 632110  011134678999988655554322    25777


Q ss_pred             EeCCCCCCCCccccccceeeEee-ccCCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCCCc-eE--EEE-eccCCCeE
Q 004214          355 WSFDGLSDDAEQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQ---DRTACVWRLPDLV-SV--VTF-RGHKRGIW  426 (768)
Q Consensus       355 wd~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~-~~--~~~-~~~~~~v~  426 (768)
                      +++.+...        ....... ........+.|+|||++|+..+.   ...|.++|+.++. ..  ..+ ........
T Consensus       252 ~~lgt~~~--------~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~  323 (751)
T 2xe4_A          252 HVMGKLQS--------EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRY  323 (751)
T ss_dssp             EETTSCGG--------GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCE
T ss_pred             EECCCCch--------hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceE
Confidence            77754311        1111211 22234567899999998887663   3468888987752 22  333 33445556


Q ss_pred             EEEEccCCCEEEEeeCC----CcEEEEeCCCCceeEE-eecCCCcEEEEEEEeCCCEE-EEEeCCCc--EEEEEC
Q 004214          427 SVEFSPVDQVVITASGD----KTIKIWSISDGSCLKT-FEGHTSSVLRASFLTRGAQI-VSCGADGL--VKLWTV  493 (768)
Q Consensus       427 ~v~~s~~~~~l~t~~~d----~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l-~s~~~dg~--i~iwd~  493 (768)
                      ++.|+..+.+++....+    ..|..+|+.++..... +..+...+.--.+++.+..| ++...+|.  |.++++
T Consensus       324 s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          324 DVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred             EEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence            66665544455554443    3577777765322223 33344433223344445554 55666775  555665

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.03  E-value=0.002  Score=63.57  Aligned_cols=199  Identities=11%  Similarity=0.190  Sum_probs=127.4

Q ss_pred             EEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecC----CCc--EEEEEe-C--CCeEEEEeCCCCCCCCccccc
Q 004214          299 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK----LQN--FLVSGS-S--DHTIKVWSFDGLSDDAEQPMN  369 (768)
Q Consensus       299 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--~l~s~~-~--dg~i~iwd~~~~~~~~~~~~~  369 (768)
                      +++...+.+-+.+||+ +++.+..+..  +.+..+..-|.    ++.  ++++.. .  +++|.+|+++...........
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~  118 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD  118 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence            4666677889999999 7777777653  56777776663    111  233333 3  588999988532110000000


Q ss_pred             cceeeEeeccCCCeEEEEE--ccC-CC-EEEEEeCCCcEEEEeCC-------CCceEEEEeccCCCeEEEEEccCCCEEE
Q 004214          370 LKAKAVVAAHGKDINSLAV--APN-DS-LVCTGSQDRTACVWRLP-------DLVSVVTFRGHKRGIWSVEFSPVDQVVI  438 (768)
Q Consensus       370 ~~~~~~~~~~~~~i~~~~~--s~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~v~~v~~s~~~~~l~  438 (768)
                      ... . .......+..+++  +|. +. ++++...+|.+..|++.       +.+.++++.. ...+..+...+....|+
T Consensus       119 ~~~-p-v~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly  195 (355)
T 3amr_A          119 PDH-P-IATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY  195 (355)
T ss_dssp             TTS-C-EECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE
T ss_pred             ccc-C-cCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE
Confidence            000 0 0011155666777  774 44 67888889999999882       3355666664 45788899999889999


Q ss_pred             EeeCCCcEEEEeCC-----CCceeEEee-cC-CCcEEEEEEE--eCCC-EEEEEe-CCCcEEEEECC-CCeEEEEec
Q 004214          439 TASGDKTIKIWSIS-----DGSCLKTFE-GH-TSSVLRASFL--TRGA-QIVSCG-ADGLVKLWTVR-TGECIATYD  503 (768)
Q Consensus       439 t~~~d~~i~iwd~~-----~~~~~~~~~-~~-~~~v~~~~~s--~~~~-~l~s~~-~dg~i~iwd~~-~~~~~~~~~  503 (768)
                      .+-++.-|..|+..     +++.+..+. ++ ...+..+++-  ++++ ||++++ .+.++.+||.. +.+.+..|.
T Consensus       196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            99998777777754     345555553 22 2368888884  4555 666666 57799999997 677777774

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.02  E-value=0.00021  Score=80.95  Aligned_cols=191  Identities=10%  Similarity=0.059  Sum_probs=111.9

Q ss_pred             cEEEEEEe-cCCCcEEEEEeCCC----eEEEEeCCCC-CCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC-
Q 004214          329 AVGAVAFS-KKLQNFLVSGSSDH----TIKVWSFDGL-SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-  401 (768)
Q Consensus       329 ~v~~~~~~-~~~~~~l~s~~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-  401 (768)
                      .+...+|+ |+|+.+.++...+|    .|+++|+.++ ....     . .   ..   .....++|+|||+.|+....+ 
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-----~-~---~~---~~~~~~~WspDg~~l~y~~~d~  242 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-----D-K---VS---GTNGEIVWGPDHTSLFYVTKDE  242 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-----C-C---EE---EECSCCEECSSTTEEEEEEECT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-----c-c---cc---CceeeEEEecCCCEEEEEEECC
Confidence            57788999 99886555555444    4999999865 3110     0 0   00   113468899999888877765 


Q ss_pred             ----CcEEEEeCCCCce--EEEEec-cCCCeEEEEEccCCCEEEEee---CCCcEEEEeCCCCc-ee--EEee-cCCCcE
Q 004214          402 ----RTACVWRLPDLVS--VVTFRG-HKRGIWSVEFSPVDQVVITAS---GDKTIKIWSISDGS-CL--KTFE-GHTSSV  467 (768)
Q Consensus       402 ----g~i~i~d~~~~~~--~~~~~~-~~~~v~~v~~s~~~~~l~t~~---~d~~i~iwd~~~~~-~~--~~~~-~~~~~v  467 (768)
                          ..|+++++.++..  ...+.. .......+.|||||++|+..+   ....|.++|+.++. ..  ..+. ......
T Consensus       243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~  322 (751)
T 2xe4_A          243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVR  322 (751)
T ss_dssp             TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCC
T ss_pred             CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCce
Confidence                2588888877642  233332 233466889999999888665   34568899998762 22  3333 334444


Q ss_pred             EEEEEEeCCCEE-EEEeCC--C--cEEEEECCCCeEEEE-eccCCC--cEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004214          468 LRASFLTRGAQI-VSCGAD--G--LVKLWTVRTGECIAT-YDKHED--KIWALAVGKKTEMFATGGSDALVNLW  533 (768)
Q Consensus       468 ~~~~~s~~~~~l-~s~~~d--g--~i~iwd~~~~~~~~~-~~~~~~--~v~~l~~s~~~~~l~s~~~dg~v~vw  533 (768)
                      .++.|+. |..| +.+..+  +  .|..+++.++..... +-.+..  .+..+.+. .+..+++...+|...+|
T Consensus       323 ~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          323 YDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             EEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred             EEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence            4554443 5554 444443  2  566677765322122 222333  34555554 33455566677765444

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.00  E-value=0.0035  Score=65.56  Aligned_cols=248  Identities=11%  Similarity=0.057  Sum_probs=142.6

Q ss_pred             eEEEeeeeec-CCCEEEEEEeCCCeEEEEeCCCceEEEeeecc---cCcEEEEEE-------ecCCCcEEEEEeCCC---
Q 004214          285 VLCLDTCALS-SGKILIVTGSKDNSVRLWDSESRCCVGVGTGH---MGAVGAVAF-------SKKLQNFLVSGSSDH---  350 (768)
Q Consensus       285 v~~l~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~~l~s~~~dg---  350 (768)
                      ...|+  +.| +++.++++....+.|++.|..++.........   ......++|       ++++..++++...++   
T Consensus       141 p~~la--~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          141 NGRLA--FDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             EEEEE--EETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCEEE--EccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            34444  555 34554555555578999999988776655432   235889999       999874444444432   


Q ss_pred             ---eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCC-------CCce-----
Q 004214          351 ---TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLP-------DLVS-----  414 (768)
Q Consensus       351 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~-------~~~~-----  414 (768)
                         .|.+++......... ....   ..... ......++++| ++.++++-..++.|..+|+.       ++..     
T Consensus       219 ~~~~V~~i~r~~~G~~~~-~~~~---~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~  293 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDD-RSDI---QLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV  293 (496)
T ss_dssp             GEEEEEEEECCTTSCCST-TSCE---EEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred             cCceEEEEecCCCCceee-cccc---eeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence               255565332111000 0000   11111 22456788999 45556666677889999987       4543     


Q ss_pred             ------EEE-Ee-ccCCCeEEEEEccCCCEEEEe-eCCCcEEEEeCC--CCce--eEEeecC---C------------Cc
Q 004214          415 ------VVT-FR-GHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSIS--DGSC--LKTFEGH---T------------SS  466 (768)
Q Consensus       415 ------~~~-~~-~~~~~v~~v~~s~~~~~l~t~-~~d~~i~iwd~~--~~~~--~~~~~~~---~------------~~  466 (768)
                            ... +. +.......++|+|+|++|+.+ +....|+.++..  .+..  ...+.+.   .            ..
T Consensus       294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~  373 (496)
T 3kya_A          294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNN  373 (496)
T ss_dssp             GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSS
T ss_pred             cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCC
Confidence                  112 11 223446789999999954444 566788886643  3321  1233221   0            12


Q ss_pred             EE-EEEEE-------eCCCEEEEEeCCCcEEEEECCCCeEEEEeccC------------------------CCcEEEEEE
Q 004214          467 VL-RASFL-------TRGAQIVSCGADGLVKLWTVRTGECIATYDKH------------------------EDKIWALAV  514 (768)
Q Consensus       467 v~-~~~~s-------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------------~~~v~~l~~  514 (768)
                      .. .++..       ++|.+.++=.....|+.++ .+|. +.++-+.                        -.....|++
T Consensus       374 P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav  451 (496)
T 3kya_A          374 PCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY  451 (496)
T ss_dssp             EEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred             CeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence            34 34443       3455555555677899998 4664 4444221                        123678999


Q ss_pred             cCC-CCEEEEEeCCCcEEEEEcCCHHHH
Q 004214          515 GKK-TEMFATGGSDALVNLWHDSTAAER  541 (768)
Q Consensus       515 s~~-~~~l~s~~~dg~v~vw~~~~~~~~  541 (768)
                      +++ +.++++=..+..|+.+++......
T Consensus       452 d~~~g~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          452 DDVKEMFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred             ECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence            997 777777777888999998765443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.97  E-value=0.003  Score=66.09  Aligned_cols=238  Identities=9%  Similarity=0.005  Sum_probs=131.9

Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC----eEEEEeCCC
Q 004214          241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN----SVRLWDSES  316 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg----~i~iwd~~~  316 (768)
                      ....+++.+.++..|.++...+.|+.+|+.++....... .......++  +.++++.++++...++    .+..++...
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia--~d~~G~~lyvad~~~~~~~~~v~~~~~~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTIC--WTHEADSMIITNDQNNNDRPNNYILTRES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEE--ECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEE--EeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence            446677775223445555544889999998876554443 344456665  6677776555554332    233344322


Q ss_pred             ceE-EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE
Q 004214          317 RCC-VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV  395 (768)
Q Consensus       317 ~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  395 (768)
                      ... ...+. .......++++|++..++++-..++.|..++.....        .. .............++|+|+|++|
T Consensus       215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~--------~~-~~~~~~~~~~P~gia~~pdG~~l  284 (430)
T 3tc9_A          215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE--------TT-PLFTIQDSGWEFHIQFHPSGNYA  284 (430)
T ss_dssp             TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE--------EE-EEEECSSSSCCEEEEECTTSSEE
T ss_pred             ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc--------EE-EEEEcCCCCcceeEEEcCCCCEE
Confidence            110 11111 123346778999545566776678899999986421        00 11111122346889999999955


Q ss_pred             E-EEeCCCcEEEEeCCC--Cce--EEEEecc---------------CCCeE-EEEEc--------cCCCEEEEeeCCCcE
Q 004214          396 C-TGSQDRTACVWRLPD--LVS--VVTFRGH---------------KRGIW-SVEFS--------PVDQVVITASGDKTI  446 (768)
Q Consensus       396 ~-~~~~dg~i~i~d~~~--~~~--~~~~~~~---------------~~~v~-~v~~s--------~~~~~l~t~~~d~~i  446 (768)
                      . +-...+.|..++...  +..  ...+.+.               -.... .++..        ++|.+.++-...+.|
T Consensus       285 yv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I  364 (430)
T 3tc9_A          285 YIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCI  364 (430)
T ss_dssp             EEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEE
T ss_pred             EEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEE
Confidence            4 445677899987653  221  2222221               01122 45553        346666666667889


Q ss_pred             EEEeCCCCceeEEeecC------------------CCcEEEEEEEeC-CCEEEEEeCCCcEEEEEC
Q 004214          447 KIWSISDGSCLKTFEGH------------------TSSVLRASFLTR-GAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       447 ~iwd~~~~~~~~~~~~~------------------~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~  493 (768)
                      +.++ .+|... ++.+.                  -.....+++.|+ +.++++-...+.|+.+++
T Consensus       365 ~~i~-~~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          365 RILT-PQGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             EEEC-TTSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EEEC-CCCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            9888 456433 33221                  124778899885 444444444567777664

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.93  E-value=0.056  Score=61.39  Aligned_cols=460  Identities=12%  Similarity=0.047  Sum_probs=230.4

Q ss_pred             CcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEec----CccceeEEEEEcCC
Q 004214           10 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD----KHFSRVTSMAITSD   85 (768)
Q Consensus        10 g~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~----~h~~~V~~l~fs~d   85 (768)
                      .-+..||..+.............|.++.. .+| .  |..|+.+ -+..+|..+++......    .....|.++...++
T Consensus        82 ~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~--lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~  156 (758)
T 3ott_A           82 NGILVYNYRADRYEQPETDFPTDVRTMAL-QGD-T--LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKD  156 (758)
T ss_dssp             TEEEEEETTTTEECCCSCCCCSCEEEEEE-ETT-E--EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTT
T ss_pred             CCeEEEeCCCCEEECcccCCCceEEEEEe-cCC-c--EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCC
Confidence            34778888877533211112345777754 344 3  5555555 48889987765432211    12345888888888


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeee-eecc-----eeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCC
Q 004214           86 GSTLISAGRDKVVNLWDLRDYSCKLT-VPTY-----EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER  159 (768)
Q Consensus        86 ~~~L~s~~~dg~i~vWd~~~~~~~~~-~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (768)
                      |...+ ++..| |..++..+++.... .+..     ..+.++.....+                       ..+..+.. 
T Consensus       157 g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~-----------------------~~lWigt~-  210 (758)
T 3ott_A          157 NQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTR-----------------------QCVWIGTE-  210 (758)
T ss_dssp             CCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTT-----------------------TEEEEEEE-
T ss_pred             CCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCC-----------------------CEEEEEEC-
Confidence            87555 44444 77888877653211 1100     012222222211                       12333333 


Q ss_pred             cEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccC
Q 004214          160 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYN  239 (768)
Q Consensus       160 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~  239 (768)
                      +.+..++..++.+......          ....+..+.. .....+.+++ ++.+.+++..................-..
T Consensus       211 ~Gl~~~~~~~~~~~~~~~l----------~~~~i~~i~~-d~~g~lWigT-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~  278 (758)
T 3ott_A          211 GYLFQYFPSTGQIKQTEAF----------HNNSIKSLAL-DGNGDLLAGT-DNGLYVYHNDTTPLQHIIHDSRNIQSLTN  278 (758)
T ss_dssp             EEEEEEETTTTEEEEEEEE----------EEEEEEEEEE-CTTCCEEEEE-TTEEEEECCTTSCCEEECCCTTCTTSCSC
T ss_pred             CCCeEEcCCCCeEEeccCC----------CCCeEEEEEE-cCCCCEEEEe-CCceeEEecCCCcEEEEEcCCCCcCcCCc
Confidence            4577788776643221100          0112233322 3345566666 45677776544321100000000000122


Q ss_pred             CceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee-----CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC
Q 004214          240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-----GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS  314 (768)
Q Consensus       240 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~  314 (768)
                      ..|.++...  ....+.+|+..| +.++.....-......     .....|.++.  ...++.  |..|+.+| +..++.
T Consensus       279 ~~i~~i~~D--~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~D~~g~--lWiGt~~G-l~~~~~  350 (758)
T 3ott_A          279 NIIWNIFAD--QEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLF--RDSKGF--YWFGGANG-LIRFTD  350 (758)
T ss_dssp             SCEEEEEEC--TTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEE--ECTTCC--EEEEETTE-EEEESC
T ss_pred             CeEEEEEEc--CCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEE--EcCCCC--EEEeeCCc-ceeecc
Confidence            346666543  344566777666 5544332111111110     1234567764  334443  55666554 666665


Q ss_pred             CCce--EEEeee-------cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee----ccCC
Q 004214          315 ESRC--CVGVGT-------GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA----AHGK  381 (768)
Q Consensus       315 ~~~~--~~~~~~-------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~  381 (768)
                      .++.  ....+.       .....|.++...+++.  |..|+ ++-+..|+.....        ........    ....
T Consensus       351 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt-~~GL~~~~~~~~~--------~~~~~~~~~~~~~~~~  419 (758)
T 3ott_A          351 PAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQ--LWIAT-DGSINRYDYATRQ--------FIHYNIVDNTGTYNTN  419 (758)
T ss_dssp             TTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSC--EEEEE-TTEEEEEETTTTE--------EEEEEEECCC--CBSS
T ss_pred             cccccceeEEeccCCcCCCCCCCceEEEEECCCCC--EEEEe-CCcHhhcCcCCCc--------EEEeecCCCcCCCCCc
Confidence            5431  111111       1124588888877765  55566 4578888876431        11100000    0234


Q ss_pred             CeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-----ceE---EEEec----cCCCeEEEEEccCCCEEEEeeCCCcEEEE
Q 004214          382 DINSLAVAPNDSLVCTGSQDRTACVWRLPDL-----VSV---VTFRG----HKRGIWSVEFSPVDQVVITASGDKTIKIW  449 (768)
Q Consensus       382 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-----~~~---~~~~~----~~~~v~~v~~s~~~~~l~t~~~d~~i~iw  449 (768)
                      .|.++...++|. |..|+..+-+.++|..+.     ...   ..+..    ....|.++...++|++.+.++..+-+..+
T Consensus       420 ~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~  498 (758)
T 3ott_A          420 WTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKI  498 (758)
T ss_dssp             SEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEE
T ss_pred             eEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEE
Confidence            688888877775 455676666888885421     111   11111    12358899999999877643334558889


Q ss_pred             eCCCCceeEEeec---CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEE-ecc-CCCcEEEEEEcCCCCEEEEE
Q 004214          450 SISDGSCLKTFEG---HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIAT-YDK-HEDKIWALAVGKKTEMFATG  524 (768)
Q Consensus       450 d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~-~~~~v~~l~~s~~~~~l~s~  524 (768)
                      |..+++.......   ....+.++....+|...+. +..| +..|+..+++...- ..+ ....|.++... +|...+ +
T Consensus       499 d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~lWi-~  574 (758)
T 3ott_A          499 NPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQSISFGSFSNNEILSMTCV-KNSIWV-S  574 (758)
T ss_dssp             ETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCBCCCCC---CCEEEEEEE-TTEEEE-E
T ss_pred             eCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEEecccCCCccceEEEEEC-CCCEEE-E
Confidence            9877654432211   1245777777777776654 4455 78888766543211 111 23457777764 665554 4


Q ss_pred             eCCCcEEEEEcCC
Q 004214          525 GSDALVNLWHDST  537 (768)
Q Consensus       525 ~~dg~v~vw~~~~  537 (768)
                      +..| |..++..+
T Consensus       575 t~~G-l~~~~~~~  586 (758)
T 3ott_A          575 TTNG-LWIIDRKT  586 (758)
T ss_dssp             ESSC-EEEEETTT
T ss_pred             CCCC-eEEEcCCC
Confidence            4566 56677654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.88  E-value=5.2e-05  Score=84.70  Aligned_cols=240  Identities=10%  Similarity=0.016  Sum_probs=136.6

Q ss_pred             CCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC----ceEEEeeecccCcEEEEEE
Q 004214          260 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----RCCVGVGTGHMGAVGAVAF  335 (768)
Q Consensus       260 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~  335 (768)
                      +...|+..++.+......+... ..+..++  +.+.++.++++-...+.|+.+++..    ......+.........+++
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~~-~~p~gla--~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glav  460 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPNL-RNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  460 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCCC-TTCCCCE--EETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEEC
T ss_pred             CccceEEEeCCCCcceeeeccC-cceEEEc--cccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEE
Confidence            3467888888776655444332 2334555  5566666566656678899998875    2222222212223456788


Q ss_pred             ecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-C-CcEEEEeCCCCc
Q 004214          336 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-D-RTACVWRLPDLV  413 (768)
Q Consensus       336 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d-g~i~i~d~~~~~  413 (768)
                      .+.+.+++++-...+.|.++++....          ..............++++|.+..|+.+.. . +.|..+++....
T Consensus       461 D~~~g~LY~tD~~~~~I~v~d~dg~~----------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~  530 (699)
T 1n7d_A          461 DWIHSNIYWTDSVLGTVSVADTKGVK----------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  530 (699)
T ss_dssp             CCSSSBCEECCTTTSCEEEEBSSSCC----------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC
T ss_pred             EeeCCcEEEEeccCCeEEEEecCCCc----------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC
Confidence            76656666666677889999876421          11111112245678899996655555443 2 678887775432


Q ss_pred             eEEEEeccCCCeEEEEEccCCC-EEEEeeCCCcEEEEeCCCCceeEEeec---CCCcEEEEEEEeCCCEEEEEeCCCcEE
Q 004214          414 SVVTFRGHKRGIWSVEFSPVDQ-VVITASGDKTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGAQIVSCGADGLVK  489 (768)
Q Consensus       414 ~~~~~~~~~~~v~~v~~s~~~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~i~  489 (768)
                      ....+...-.....|+|+|++. +.++-+..+.|..+++.. ...+.+..   .......+++..+ ..+++....+.|.
T Consensus       531 ~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~  608 (699)
T 1n7d_A          531 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIF  608 (699)
T ss_dssp             CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS-SCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEE
T ss_pred             eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC-CceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEE
Confidence            2222222233467899998755 445555667899999864 33333321   1122334555433 3444545567999


Q ss_pred             EEECCCCeEEEEeccCCCcEEEEEE
Q 004214          490 LWTVRTGECIATYDKHEDKIWALAV  514 (768)
Q Consensus       490 iwd~~~~~~~~~~~~~~~~v~~l~~  514 (768)
                      .++..+|+.+..+.......+.|++
T Consensus       609 ~~d~~~G~~~~~i~~~~~~P~~i~v  633 (699)
T 1n7d_A          609 SANRLTGSDVNLLAENLLSPEDMVL  633 (699)
T ss_dssp             EEETTTEEEEECCCTTCSSCCCCCB
T ss_pred             EEEccCCCceEEeecCCCCCcEEEE
Confidence            9999889888777543333444443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.85  E-value=0.0072  Score=63.11  Aligned_cols=238  Identities=9%  Similarity=0.028  Sum_probs=132.7

Q ss_pred             ceeEEEEecC-CCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC---C-eEEEEeCC
Q 004214          241 EILDLKFLGE-EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD---N-SVRLWDSE  315 (768)
Q Consensus       241 ~i~~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d---g-~i~iwd~~  315 (768)
                      ....+++.+. +...|.++...+.|+.++..++....... ......+++  +.++++ ++++....   . .+...+..
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~gia--vd~dG~-lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVN--FTLNGD-MVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEE--ECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEE--ECCCCC-EEEEcCCCCcccceEEEEECC
Confidence            3567788764 34556666555899999998877664443 344466666  666666 45554321   1 13333322


Q ss_pred             CceE-EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE
Q 004214          316 SRCC-VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL  394 (768)
Q Consensus       316 ~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  394 (768)
                      .+.. ...+. .......++++|+...++++-..++.|..++...+...       ... ...........++++|+++.
T Consensus       216 ~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-------~~~-~~~~~~~~~~~ia~dpdG~~  286 (433)
T 4hw6_A          216 SGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-------EEE-VMMDTKGSNFHIVWHPTGDW  286 (433)
T ss_dssp             GTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-------EEE-EECSCCSSCEEEEECTTSSE
T ss_pred             CCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-------EEE-eccCCCCCcccEEEeCCCCE
Confidence            1110 01111 12334567888844546666667788888887633110       000 01111122346999999985


Q ss_pred             EEEE-eCCCcEEEEeCC--CCce--EEEEecc---------------CCCeEEEEE---------ccCCCEEEEeeCCCc
Q 004214          395 VCTG-SQDRTACVWRLP--DLVS--VVTFRGH---------------KRGIWSVEF---------SPVDQVVITASGDKT  445 (768)
Q Consensus       395 l~~~-~~dg~i~i~d~~--~~~~--~~~~~~~---------------~~~v~~v~~---------s~~~~~l~t~~~d~~  445 (768)
                      |..+ ...+.|..++..  ++..  ...+.+.               -.....+++         .++|.+.++-...+.
T Consensus       287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~  366 (433)
T 4hw6_A          287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT  366 (433)
T ss_dssp             EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE
T ss_pred             EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE
Confidence            5544 456789998865  2321  1222221               123567899         777777777777889


Q ss_pred             EEEEeCCCCceeEEeecC------------------CCcEEEEEEE-eCCCEEEEEeCCCcEEEEEC
Q 004214          446 IKIWSISDGSCLKTFEGH------------------TSSVLRASFL-TRGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       446 i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~  493 (768)
                      |+.++. +|. +.++.+.                  -.....+++. ++|.++++=...+.|+.+++
T Consensus       367 I~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          367 VRVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             EEEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EEEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            999985 563 3333322                  1236678888 45544444444556776654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.83  E-value=0.0085  Score=69.45  Aligned_cols=294  Identities=12%  Similarity=0.114  Sum_probs=169.8

Q ss_pred             CcEEEEECCCceeeeeeeC-CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCC
Q 004214          262 EQVQVYDLSSMSCSYVLAG-HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ  340 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  340 (768)
                      .+|.|.|+..+..+..-+- -.+.|      ..|. ..+++.- ...++.|+|+.+...+..+.-.. +|.-=.|-....
T Consensus        48 ~~vvIidl~~~~~~~rrpi~AdsAI------MnP~-~~iiALr-ag~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~  118 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRPISADSAI------MNPA-SKVIALK-AGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNT  118 (1630)
T ss_pred             ceEEEEECCCCCCcccccccchhhc------cCCC-cceEEEe-cCCeEEEeehHHhhhhcccccCC-CceEEEecCCCe
Confidence            4788999988665422211 11111      3333 3434443 47899999999988777766544 343334443322


Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeecc----CCCeEEEEEccCCCEEEEEe-------CCCcEEEEeC
Q 004214          341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH----GKDINSLAVAPNDSLVCTGS-------QDRTACVWRL  409 (768)
Q Consensus       341 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~-------~dg~i~i~d~  409 (768)
                        |+-. .+..|.-|++.+.. .        +...+..|    +..|..-..+++.++++..+       -.|.+.+|..
T Consensus       119 --l~lV-T~~aVyHW~~~~~s-~--------P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~  186 (1630)
T 1xi4_A          119 --VALV-TDNAVYHWSMEGES-Q--------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV  186 (1630)
T ss_pred             --eEEE-cCCeEEEeccCCCC-c--------cHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeec
Confidence              3333 34579999996521 1        11111111    46788888889998887544       2478888887


Q ss_pred             CCCceEEEEeccCCCeEEEEEcc--C-CCEEEEeeC---CCcEEEEeCCCC---cee------EEee---cCCCcEEEEE
Q 004214          410 PDLVSVVTFRGHKRGIWSVEFSP--V-DQVVITASG---DKTIKIWSISDG---SCL------KTFE---GHTSSVLRAS  471 (768)
Q Consensus       410 ~~~~~~~~~~~~~~~v~~v~~s~--~-~~~l~t~~~---d~~i~iwd~~~~---~~~------~~~~---~~~~~v~~~~  471 (768)
                      +.+ ....+.||......+....  . ..+++.+..   .+.++|-++...   .+.      ..+.   .......++.
T Consensus       187 er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~  265 (1630)
T 1xi4_A          187 DRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ  265 (1630)
T ss_pred             ccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEE
Confidence            654 2334555554433333221  1 122222211   268888888542   111      1111   1233445677


Q ss_pred             EEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHHHHHHHHHH---H
Q 004214          472 FLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRK---E  548 (768)
Q Consensus       472 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~---~  548 (768)
                      .++.-..+...+.-|.|.+||+.||.++..-+-...+|...+-++...-++.....|.|.--.++......-....   .
T Consensus       266 vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv~yi~~~l~~~  345 (1630)
T 1xi4_A          266 ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNP  345 (1630)
T ss_pred             eccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchhhhhHhhccCCH
Confidence            7777778888889999999999999998776656666666555554444555557777665555544332211110   0


Q ss_pred             H-------------HHHHhhhHHHHhhcccchHHHHHHHhhc
Q 004214          549 E-------------EAVLRGQELENAVLDADYTKAIQVAFEL  577 (768)
Q Consensus       549 ~-------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~  577 (768)
                      +             ......++++.++..++|.+|-.+|...
T Consensus       346 ~la~~~a~r~~lpGad~l~~~~F~~l~~~g~y~~AA~~aa~s  387 (1630)
T 1xi4_A          346 DLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANA  387 (1630)
T ss_pred             HHHHHHHHhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence            0             0122345688899999999999988764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.83  E-value=0.011  Score=61.83  Aligned_cols=254  Identities=11%  Similarity=0.036  Sum_probs=140.5

Q ss_pred             ceeEEEEecC-CCCEEEEEeCCCcEEEEECCCceeeeeeeCCc---cceEEEeeee-------ecCCCEEEEEEeCCC--
Q 004214          241 EILDLKFLGE-EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS---EIVLCLDTCA-------LSSGKILIVTGSKDN--  307 (768)
Q Consensus       241 ~i~~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~---~~v~~l~~~~-------~~~~~~~l~~~~~dg--  307 (768)
                      ....++|.|. .+.++++....+.|+++|+.++..........   .....++  +       .+++..++++...++  
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia--~~~~~~~~d~~G~~lyvad~~~~~~  217 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIA--FNKKIEGYADEAEYMIVAIDYDGKG  217 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEE--ECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEE--EeecccccCCCCCEEEEEeCCCCCc
Confidence            4567778763 44455555555789999999888776554322   2356665  5       667776455544432  


Q ss_pred             ----eEEEEeCCC-ceEE-----EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCC-------CCCC-CCccccc
Q 004214          308 ----SVRLWDSES-RCCV-----GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD-------GLSD-DAEQPMN  369 (768)
Q Consensus       308 ----~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-------~~~~-~~~~~~~  369 (768)
                          .|.+++... +...     ..+.. -.....++++|++..++++-..++.|..+|+.       .+.. .+..+..
T Consensus       218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~  296 (496)
T 3kya_A          218 DESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN  296 (496)
T ss_dssp             GGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred             ccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence                266665333 1111     11111 12335678899767677788888999999986       3321 0000000


Q ss_pred             ---cceeeEeeccCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCC--CCce--EEEEecc---C------------CCeE
Q 004214          370 ---LKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLP--DLVS--VVTFRGH---K------------RGIW  426 (768)
Q Consensus       370 ---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~--~~~~--~~~~~~~---~------------~~v~  426 (768)
                         .... ...........++|+|+|+.|..+ +..+.|+.++..  .+..  ...+.+.   .            ....
T Consensus       297 ~g~~~~l-~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~  375 (496)
T 3kya_A          297 PNTFKQL-FTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC  375 (496)
T ss_dssp             TTTEEEE-EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred             cccccee-EecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence               0011 111223446799999999965544 456788886653  3321  1223221   0            1233


Q ss_pred             -EEEEc-------cCCCEEEEeeCCCcEEEEeCCCCceeEEeecC------------------------CCcEEEEEEEe
Q 004214          427 -SVEFS-------PVDQVVITASGDKTIKIWSISDGSCLKTFEGH------------------------TSSVLRASFLT  474 (768)
Q Consensus       427 -~v~~s-------~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~------------------------~~~v~~~~~s~  474 (768)
                       .++..       +++.++++=.....|+.++ .+| .+.++.+.                        -.....+++.+
T Consensus       376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~  453 (496)
T 3kya_A          376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD  453 (496)
T ss_dssp             EEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred             EEEEEccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence             44554       4567777767778899998 456 34444332                        12356778877


Q ss_pred             C-CCEEEEEeCCCcEEEEECCCCeEEE
Q 004214          475 R-GAQIVSCGADGLVKLWTVRTGECIA  500 (768)
Q Consensus       475 ~-~~~l~s~~~dg~i~iwd~~~~~~~~  500 (768)
                      + |.+.++=.....|+.+++....++.
T Consensus       454 ~~g~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          454 VKEMFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             TTTEEEEEETTTTEEEEEEECCCC---
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCcccc
Confidence            6 5444444445677777766554443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.76  E-value=0.012  Score=58.12  Aligned_cols=203  Identities=11%  Similarity=0.144  Sum_probs=123.1

Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeee--eecCCCE--E-EEEEeC--CCeEEEEeC--CCceEEE
Q 004214          251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTC--ALSSGKI--L-IVTGSK--DNSVRLWDS--ESRCCVG  321 (768)
Q Consensus       251 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~--~~~~~~~--~-l~~~~~--dg~i~iwd~--~~~~~~~  321 (768)
                      ...+++.....+.+.+||+ +++.+..+..  +.+..++.-  +.-.++.  + +++...  +++|.+|++  .++. +.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence            3345666666789999999 7777777764  233333311  1112221  2 333333  579999966  4443 43


Q ss_pred             eeec------cc-CcEEEEEE--ecC-CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214          322 VGTG------HM-GAVGAVAF--SKK-LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN  391 (768)
Q Consensus       322 ~~~~------~~-~~v~~~~~--~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  391 (768)
                      .+..      .. ..+..+|+  +|. +..++++...+|.+..|++.......   ...+....+. ....+..+.+.+.
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~---~~~~lVR~f~-lgsq~EgcvvDd~  190 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY---ISGKKVRAFK-MNSQTEGMAADDE  190 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC---EEEEEEEEEE-CSSCEEEEEEETT
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc---ccceEEEEec-CCCCcceEEEcCC
Confidence            3321      11 45566777  664 33478888899999999985321110   1222223322 3467889999998


Q ss_pred             CCEEEEEeCCCcEEEEeCC-----CCceEEEEe-cc-CCCeEEEEE--ccCCC-EEEEee-CCCcEEEEeCC-CCceeEE
Q 004214          392 DSLVCTGSQDRTACVWRLP-----DLVSVVTFR-GH-KRGIWSVEF--SPVDQ-VVITAS-GDKTIKIWSIS-DGSCLKT  459 (768)
Q Consensus       392 ~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~-~~-~~~v~~v~~--s~~~~-~l~t~~-~d~~i~iwd~~-~~~~~~~  459 (768)
                      ...|+++-.+.-|..|+.+     +++.+..+. ++ ...+..|++  .++++ +|++++ .+.+..+||.. +.+.+..
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~  270 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD  270 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence            8899999998777777754     344554442 22 236788887  45555 566665 67799999986 5566666


Q ss_pred             ee
Q 004214          460 FE  461 (768)
Q Consensus       460 ~~  461 (768)
                      |.
T Consensus       271 f~  272 (355)
T 3amr_A          271 FR  272 (355)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.75  E-value=0.0001  Score=82.39  Aligned_cols=221  Identities=10%  Similarity=-0.047  Sum_probs=127.1

Q ss_pred             CceeEEEEecCCCCEEEEEeCCCcEEEEECCC----ceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214          240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSS----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE  315 (768)
Q Consensus       240 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~----~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~  315 (768)
                      ..+..++|.+..+.++++-...+.|+.+++..    ......+.........++  +...++.++++-...+.|.++++.
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla--vD~~~g~LY~tD~~~~~I~v~d~d  483 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA--VDWIHSNIYWTDSVLGTVSVADTK  483 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE--CCCSSSBCEECCTTTSCEEEEBSS
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE--EEeeCCcEEEEeccCCeEEEEecC
Confidence            35667888765555555555678899999875    222222221112233443  333455545665667889999988


Q ss_pred             CceEEEeeecccCcEEEEEEecCCCcEEEEEeCC-CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE
Q 004214          316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL  394 (768)
Q Consensus       316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  394 (768)
                      .......+.........+++.|.+..++++-... +.|..+++.....          .......-...+.|+++|++..
T Consensus       484 g~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~----------~~l~~~~l~~PnGlavd~~~~~  553 (699)
T 1n7d_A          484 GVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----------YSLVTENIQWPNGITLDLLSGR  553 (699)
T ss_dssp             SCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC----------CEESCSSCSSCCCEEECTTTCC
T ss_pred             CCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe----------eEEEeCCCCCccEEEEeccCCE
Confidence            6654444433334457788998766555544333 6777776653211          0111112234678999997555


Q ss_pred             EEE-EeCCCcEEEEeCCCCceEEEEec--cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEE
Q 004214          395 VCT-GSQDRTACVWRLPDLVSVVTFRG--HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRAS  471 (768)
Q Consensus       395 l~~-~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~  471 (768)
                      |+. -+..+.|..+++........+..  .......|++..+ .++++....+.|..+|..+|+.+..+.......+.++
T Consensus       554 LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~  632 (699)
T 1n7d_A          554 LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV  632 (699)
T ss_dssp             EEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCC
T ss_pred             EEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEE
Confidence            544 44567899999865433322221  1223445566543 5666666778999999888888777754333344444


Q ss_pred             EE
Q 004214          472 FL  473 (768)
Q Consensus       472 ~s  473 (768)
                      +.
T Consensus       633 v~  634 (699)
T 1n7d_A          633 LF  634 (699)
T ss_dssp             BC
T ss_pred             Ee
Confidence            43

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.68  E-value=0.004  Score=60.83  Aligned_cols=195  Identities=12%  Similarity=0.123  Sum_probs=122.4

Q ss_pred             EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec------cCCCeEEEEE---ccCCCEEEEEeC
Q 004214          330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA------HGKDINSLAV---APNDSLVCTGSQ  400 (768)
Q Consensus       330 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~---s~~~~~l~~~~~  400 (768)
                      -.++.|.+....++++.-..++|..|+.......        .. ....      ....+..+.+   .|+++++++...
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~--------~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~   85 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF--------NV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN   85 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE--------EE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE--------EE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence            3467888865655555558999999998633110        00 1110      0113578999   688888876442


Q ss_pred             -------------CCcEEEEeCC---CCceEEEEe--cc-----------CCCeEEEEEccCCCEEEEeeCC-CcEEEEe
Q 004214          401 -------------DRTACVWRLP---DLVSVVTFR--GH-----------KRGIWSVEFSPVDQVVITASGD-KTIKIWS  450 (768)
Q Consensus       401 -------------dg~i~i~d~~---~~~~~~~~~--~~-----------~~~v~~v~~s~~~~~l~t~~~d-~~i~iwd  450 (768)
                                   +..+..||+.   +++.+....  ..           ......++..++|+..++++.- +.|..++
T Consensus        86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~  165 (334)
T 2p9w_A           86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS  165 (334)
T ss_dssp             TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred             cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence                         5779999999   777766554  11           1247899999999999988887 8877777


Q ss_pred             CCCCceeEEee------cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeE--EEEe-ccC---CCcEEEE-EEcCC
Q 004214          451 ISDGSCLKTFE------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC--IATY-DKH---EDKIWAL-AVGKK  517 (768)
Q Consensus       451 ~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~-~~~---~~~v~~l-~~s~~  517 (768)
                      .. |+.+..+.      ......+.+++.|+|+.|++....|.+..+|+.+...  +..- .+.   -.....| ..-.+
T Consensus       166 pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~  244 (334)
T 2p9w_A          166 AD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVG  244 (334)
T ss_dssp             TT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEET
T ss_pred             CC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccC
Confidence            64 33333332      1122366899999999998887799999999875432  2211 011   1123333 33346


Q ss_pred             CCE-EEEEeCCCcEEEEE
Q 004214          518 TEM-FATGGSDALVNLWH  534 (768)
Q Consensus       518 ~~~-l~s~~~dg~v~vw~  534 (768)
                      |+. |++.+..+.+.+..
T Consensus       245 G~vllV~~~~~~~~~l~S  262 (334)
T 2p9w_A          245 NESVLVGARAPYAISFRS  262 (334)
T ss_dssp             TEEEEEEEETTEEEEEEC
T ss_pred             CEEEEEEcCCCCEEEEEC
Confidence            777 55555565544443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.68  E-value=0.057  Score=53.95  Aligned_cols=229  Identities=10%  Similarity=0.087  Sum_probs=121.8

Q ss_pred             CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce---eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214          239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS---CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE  315 (768)
Q Consensus       239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~  315 (768)
                      ...+..+.|.+  +..+++ +..+.|.. ....++   .......+...+..+.  +..++ .+++++ .+|.|..- ..
T Consensus        79 ~~~~~~i~~~~--~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~--~~~~~-~~~~~~-~~g~v~~S-~D  149 (327)
T 2xbg_A           79 DYRFNSVSFQG--NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIK--ALGNG-SAEMIT-NVGAIYRT-KD  149 (327)
T ss_dssp             CCEEEEEEEET--TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEE--EEETT-EEEEEE-TTCCEEEE-SS
T ss_pred             CccEEEEEecC--CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEE--EECCC-CEEEEe-CCccEEEE-cC
Confidence            34677888763  344444 44464443 222232   2211111223455554  44444 434444 45654322 22


Q ss_pred             Cce-EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEE-EeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC
Q 004214          316 SRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKV-WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS  393 (768)
Q Consensus       316 ~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  393 (768)
                      .++ -......+...+..+++.+++. +++.+ .+|.+.. +|-. +.       .....  .......+..+++.+++.
T Consensus       150 gG~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g-~~G~~~~S~d~g-G~-------tW~~~--~~~~~~~~~~~~~~~~g~  217 (327)
T 2xbg_A          150 SGKNWQALVQEAIGVMRNLNRSPSGE-YVAVS-SRGSFYSTWEPG-QT-------AWEPH--NRTTSRRLHNMGFTPDGR  217 (327)
T ss_dssp             TTSSEEEEECSCCCCEEEEEECTTSC-EEEEE-TTSSEEEEECTT-CS-------SCEEE--ECCSSSCEEEEEECTTSC
T ss_pred             CCCCCEEeecCCCcceEEEEEcCCCc-EEEEE-CCCcEEEEeCCC-CC-------ceeEC--CCCCCCccceeEECCCCC
Confidence            222 2222334556788999998754 55544 4454433 3321 10       11111  123456788899999887


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEe-c---cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec---CCCc
Q 004214          394 LVCTGSQDRTACVWRLPDLVSVVTFR-G---HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG---HTSS  466 (768)
Q Consensus       394 ~l~~~~~dg~i~i~d~~~~~~~~~~~-~---~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~---~~~~  466 (768)
                      +++ ++.+|.+++.+...++.-..+. +   +...+.++.+.+++.+++++. ++.| .+..+.|+.-..+..   ....
T Consensus       218 ~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~  294 (327)
T 2xbg_A          218 LWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSN  294 (327)
T ss_dssp             EEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSC
T ss_pred             EEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCC
Confidence            664 4567877776433233222222 1   223588999998888777664 5766 455555654444442   3456


Q ss_pred             EEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214          467 VLRASFLTRGAQIVSCGADGLVKLWT  492 (768)
Q Consensus       467 v~~~~~s~~~~~l~s~~~dg~i~iwd  492 (768)
                      +.++.|.+++ .+++++.+|.|.-++
T Consensus       295 ~~~v~~~~~~-~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          295 FYKILFFSPD-QGFILGQKGILLRYV  319 (327)
T ss_dssp             CCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred             eEEEEEECCC-ceEEEcCCceEEEEc
Confidence            7888888655 466677788777665

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.54  E-value=0.0088  Score=59.19  Aligned_cols=218  Identities=12%  Similarity=0.082  Sum_probs=107.4

Q ss_pred             CeEEEEeCCCceEEEeeecccCcE-EEEEEecCCCcEEEEEeCC-----CeEEEEeCCCCCCCCccccccceeeEeeccC
Q 004214          307 NSVRLWDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG  380 (768)
Q Consensus       307 g~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  380 (768)
                      ..+.+||..+++............ .+++. .+ ..+++.|+.+     ..+.+||........     ...........
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~-~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~-----W~~~~~~p~~r  103 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS-LH-DRIYVIGGYDGRSRLSSVECLDYTADEDGV-----WYSVAPMNVRR  103 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ET-TEEEEECCBCSSCBCCCEEEEETTCCTTCC-----CEEECCCSSCC
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEE-EC-CEEEEEcCCCCCccCceEEEEECCCCCCCe-----eEECCCCCCCc
Confidence            368889988876544322111111 11222 23 3467777754     458888876542000     11111001111


Q ss_pred             CCeEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCceEE--EEeccCCCeEEEEEccCCCEEEEeeCC-----CcEEE
Q 004214          381 KDINSLAVAPNDSLVCTGSQDR-----TACVWRLPDLVSVV--TFRGHKRGIWSVEFSPVDQVVITASGD-----KTIKI  448 (768)
Q Consensus       381 ~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~t~~~d-----~~i~i  448 (768)
                      ....++.  .++++++.|+.++     .+.+||+.+.+-..  .+......-.++.+  ++++++.|+.+     ..+.+
T Consensus       104 ~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~  179 (301)
T 2vpj_A          104 GLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEK  179 (301)
T ss_dssp             BSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEE
T ss_pred             cceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEE
Confidence            1112222  2677778776543     58889987764322  22211111222222  57777777654     45889


Q ss_pred             EeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCC-----CcEEEEECCCCeEEEEeccCCC--cEEEEEEcCCCCEE
Q 004214          449 WSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGECIATYDKHED--KIWALAVGKKTEMF  521 (768)
Q Consensus       449 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~--~v~~l~~s~~~~~l  521 (768)
                      ||+.+.+-...-..........+..-+++.++.|+.+     ..+.+||+.+.+....-.....  ...++.+  +++.+
T Consensus       180 ~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~  257 (301)
T 2vpj_A          180 YDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLY  257 (301)
T ss_dssp             EETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEE
T ss_pred             EeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEE
Confidence            9987764322211111111111222366677777764     4689999988764433221111  1122222  67777


Q ss_pred             EEEeCCC-----cEEEEEcCC
Q 004214          522 ATGGSDA-----LVNLWHDST  537 (768)
Q Consensus       522 ~s~~~dg-----~v~vw~~~~  537 (768)
                      +.||.++     .+.+||+.+
T Consensus       258 v~GG~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          258 AIAGYDGNSLLSSIECYDPII  278 (301)
T ss_dssp             EECCBCSSSBEEEEEEEETTT
T ss_pred             EEcCcCCCcccccEEEEcCCC
Confidence            7777653     467777664

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.49  E-value=0.085  Score=53.26  Aligned_cols=228  Identities=12%  Similarity=0.091  Sum_probs=121.6

Q ss_pred             ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE--EEeee---cccCcEEEEEEecC---CCcEEEEEeCC-----C
Q 004214          284 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC--VGVGT---GHMGAVGAVAFSKK---LQNFLVSGSSD-----H  350 (768)
Q Consensus       284 ~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~~l~s~~~d-----g  350 (768)
                      ....++  +.+++.  ++.+..+|.|.+++  .+..  +..+.   ........++++|+   +..+.++-...     +
T Consensus        32 ~P~~ia--~~pdG~--l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           32 VPWALA--FLPDGG--MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             CEEEEE--ECTTSC--EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CceEEE--EcCCCe--EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            344555  666665  44456679999998  3432  22111   12356789999998   55455554433     5


Q ss_pred             eEEEEeCCCCCCCCcccccccee-eEee---ccCCCeEEEEEccCCCEEEEEeC-------------CCcEEEEeCCCC-
Q 004214          351 TIKVWSFDGLSDDAEQPMNLKAK-AVVA---AHGKDINSLAVAPNDSLVCTGSQ-------------DRTACVWRLPDL-  412 (768)
Q Consensus       351 ~i~iwd~~~~~~~~~~~~~~~~~-~~~~---~~~~~i~~~~~s~~~~~l~~~~~-------------dg~i~i~d~~~~-  412 (768)
                      .|..|+......     ...... ....   ........++|.|+|.+.++.+.             .|.|.-++.... 
T Consensus       106 ~v~r~~~~~~~~-----~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~  180 (352)
T 2ism_A          106 QVVRLRHLGERG-----VLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP  180 (352)
T ss_dssp             EEEEEEECSSCE-----EEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred             EEEEEEeCCCCc-----CceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence            677777653210     000011 1011   11123468999999976666432             145666665430 


Q ss_pred             ------------ceEEEEeccCCCeEEEEEcc-CCCEEEEeeCCCcE------EEEeCCCCc------------------
Q 004214          413 ------------VSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTI------KIWSISDGS------------------  455 (768)
Q Consensus       413 ------------~~~~~~~~~~~~v~~v~~s~-~~~~l~t~~~d~~i------~iwd~~~~~------------------  455 (768)
                                  .......++ .....++|+| +++++++-.....+      .|.-+..+.                  
T Consensus       181 p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~  259 (352)
T 2ism_A          181 APGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD  259 (352)
T ss_dssp             CTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred             CCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence                        111111233 2356789999 67766654433331      122222221                  


Q ss_pred             eeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeE------EEEeccCCCcEEEEEEcCCCCEEEEEe
Q 004214          456 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC------IATYDKHEDKIWALAVGKKTEMFATGG  525 (768)
Q Consensus       456 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~l~~s~~~~~l~s~~  525 (768)
                      ++..+. +......++| .+|..+++.-..+.|...++.....      ...+-.....+..+++.|||.++++..
T Consensus       260 p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          260 PLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             CSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             CeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            233332 3345667788 5676666655666787777654321      122212346789999999998777764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.45  E-value=0.011  Score=57.80  Aligned_cols=156  Identities=6%  Similarity=0.079  Sum_probs=107.7

Q ss_pred             CCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceEEE-Eec----c--CCCeEEEEE---ccCCCEEEEee-------
Q 004214          380 GKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVVT-FRG----H--KRGIWSVEF---SPVDQVVITAS-------  441 (768)
Q Consensus       380 ~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~-~~~----~--~~~v~~v~~---s~~~~~l~t~~-------  441 (768)
                      .....+++|++....+..++ ..++|..|+...+..... +.+    .  ...+..+.|   .|+++++++..       
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            34456789988555555555 899999999876543333 221    0  113578999   68888887644       


Q ss_pred             ------CCCcEEEEeCC---CCceeEEee--c-----------CCCcEEEEEEEeCCCEEEEEeCC-CcEEEEECCCCeE
Q 004214          442 ------GDKTIKIWSIS---DGSCLKTFE--G-----------HTSSVLRASFLTRGAQIVSCGAD-GLVKLWTVRTGEC  498 (768)
Q Consensus       442 ------~d~~i~iwd~~---~~~~~~~~~--~-----------~~~~v~~~~~s~~~~~l~s~~~d-g~i~iwd~~~~~~  498 (768)
                            .+..|..||+.   +++.+....  .           -......++..++|+.-++++.. +.|...+... +.
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~~  170 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-KT  170 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-CC
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-CE
Confidence                  26789999998   787776554  1           11347889999999988888887 7777776543 33


Q ss_pred             EEEecc------CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          499 IATYDK------HEDKIWALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       499 ~~~~~~------~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      +..+..      .....+.|+++|+|..|++....|.|..+++.
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            332211      11235689999999999888779999999976

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.43  E-value=0.13  Score=51.88  Aligned_cols=247  Identities=12%  Similarity=0.139  Sum_probs=145.8

Q ss_pred             CCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecc
Q 004214          158 ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG  237 (768)
Q Consensus       158 ~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~  237 (768)
                      +...|.+.|+..+.....+.             ....++..+|.. .+++.-....+.+|++.....        .....
T Consensus        46 ~~~~vvIiDl~~~~~~~rrp-------------i~AdsAIMnP~~-~iiALrag~~lQiFnle~K~k--------lks~~  103 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRP-------------ISADSAIMNPAS-KVIALKAGKTLQIFNIEMKSK--------MKAHT  103 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEE-------------CCCSEEEECSSS-SCEEEEETTEEEEEETTTTEE--------EEEEE
T ss_pred             CCCeEEEEECCCCCcceecc-------------cccceeeeCCCC-cEEEEecCCeEEEEchHHhhh--------hccee
Confidence            33467888887762221111             112344455655 455555688999999976531        11122


Q ss_pred             cCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc-eeeeeeeCCcc--ceEEEeeeeecCCCEEEEEEe------CCCe
Q 004214          238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-SCSYVLAGHSE--IVLCLDTCALSSGKILIVTGS------KDNS  308 (768)
Q Consensus       238 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~--~v~~l~~~~~~~~~~~l~~~~------~dg~  308 (768)
                      .+.+|.--.|.++  +.|+..+. ..|+-|++... .+.+.+.-|..  ...-+.+...++.++++++|=      -.|.
T Consensus       104 ~~e~VvfWkWis~--~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~  180 (494)
T 1bpo_A          104 MTDDVTFWKWISL--NTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA  180 (494)
T ss_dssp             CSSCCCEEEEEET--TEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEE
T ss_pred             cCCCceEEEecCC--CeEEEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccce
Confidence            3456777788743  46666655 78999999743 34444444332  222233336777888776663      3478


Q ss_pred             EEEEeCCCceEEEeeecccCcEEEEEEecCC--CcEEEEEeCC---CeEEEEeCCCCCCCCccccccceeeEee---ccC
Q 004214          309 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKL--QNFLVSGSSD---HTIKVWSFDGLSDDAEQPMNLKAKAVVA---AHG  380 (768)
Q Consensus       309 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~  380 (768)
                      +.+|..+.+. .+.+.+|.+.-..+.+..+.  ..+++.+...   +.+++-++...... ..++..+......   ...
T Consensus       181 mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~-~~~f~kk~vdv~fppe~~~  258 (494)
T 1bpo_A          181 MQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG-NQPFPKKAVDVFFPPEAQN  258 (494)
T ss_dssp             EEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTT-CCCCCCEEEECCCCTTSTT
T ss_pred             EEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccC-CCCccceeeeeeCCccccc
Confidence            8899887653 44567776665544443211  2234444332   78999998643111 1222222222222   224


Q ss_pred             CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEc
Q 004214          381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFS  431 (768)
Q Consensus       381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s  431 (768)
                      +-..++.+++.-..+..-+.-|.+++||+.++.++..-+-...+|..-+.+
T Consensus       259 DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~  309 (494)
T 1bpo_A          259 DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH  309 (494)
T ss_dssp             CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE
T ss_pred             CceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEeccc
Confidence            556789999988899999999999999999999988766555555443333

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.39  E-value=0.016  Score=57.36  Aligned_cols=223  Identities=13%  Similarity=0.124  Sum_probs=109.1

Q ss_pred             EEEEEEeCC----CeEEEEeCCCceEEEeeecccCcE-EEEEEecCCCcEEEEEeCC-----CeEEEEeCCCCCCCCccc
Q 004214          298 ILIVTGSKD----NSVRLWDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQP  367 (768)
Q Consensus       298 ~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~  367 (768)
                      .+++.|+.+    ..+..||+.+.+............ .+++.. + ..+++.|+.+     ..+..||.....      
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~d~~~~~------   88 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM-A-GLVFAVGGFNGSLRVRTVDSYDPVKDQ------   88 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T-TEEEEESCBCSSSBCCCEEEEETTTTE------
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE-C-CEEEEEeCcCCCccccceEEECCCCCc------
Confidence            345555543    357888988776443321111111 112222 3 3466777654     347778876431      


Q ss_pred             cccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCceEEE--EeccCCCeEEEEEccCCCEEEEe
Q 004214          368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-----TACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITA  440 (768)
Q Consensus       368 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~t~  440 (768)
                        ...............++.  .++++++.|+.++     .+.+||+.+.+-...  +........++.  -++++++.|
T Consensus        89 --W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~G  162 (302)
T 2xn4_A           89 --WTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVG  162 (302)
T ss_dssp             --EEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEC
T ss_pred             --eeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEe
Confidence              111100000111112222  2677888887654     477888876543221  111111112222  256777776


Q ss_pred             eCC-------CcEEEEeCCCCceeE--EeecCCCcEEEEEEEeCCCEEEEEeCCC-----cEEEEECCCCeEEEEeccCC
Q 004214          441 SGD-------KTIKIWSISDGSCLK--TFEGHTSSVLRASFLTRGAQIVSCGADG-----LVKLWTVRTGECIATYDKHE  506 (768)
Q Consensus       441 ~~d-------~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~  506 (768)
                      +.+       ..+.+||+.+.+-..  .+....... ++ ..-+++.++.|+.++     .+.+||+.+++-...-....
T Consensus       163 G~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~  240 (302)
T 2xn4_A          163 GYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GV-GVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM  240 (302)
T ss_dssp             CEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC-EE-EEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred             CCCCCCCccccEEEEEeCCCCcEEECCCCccccccc-cE-EEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC
Confidence            542       358899987764222  121111111 12 223667777777643     68899998875443221111


Q ss_pred             C--cEEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCH
Q 004214          507 D--KIWALAVGKKTEMFATGGSDA-----LVNLWHDSTA  538 (768)
Q Consensus       507 ~--~v~~l~~s~~~~~l~s~~~dg-----~v~vw~~~~~  538 (768)
                      .  ....+.  -++..++.||.++     .+.+||+.+.
T Consensus       241 ~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          241 CRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             CCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             ccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence            1  111222  2677778887654     3788887653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.33  E-value=0.022  Score=56.34  Aligned_cols=225  Identities=8%  Similarity=0.065  Sum_probs=112.4

Q ss_pred             CEEEEEEeC--CCeEEEEeCCCceEEEeeecc--cCcEEEEEEecCCCcEEEEEeCC----CeEEEEeCCCCCCCCcccc
Q 004214          297 KILIVTGSK--DNSVRLWDSESRCCVGVGTGH--MGAVGAVAFSKKLQNFLVSGSSD----HTIKVWSFDGLSDDAEQPM  368 (768)
Q Consensus       297 ~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~  368 (768)
                      +.+++.|+.  ...+.+||..+++....-...  ...-.++.+  + ..+++.|+.+    ..+..||.....       
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~d~~~~~-------   81 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--D-NVVYILGGSQLFPIKRMDCYNVVKDS-------   81 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--T-TEEEEECCBSSSBCCEEEEEETTTTE-------
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--C-CEEEEEeCCCCCCcceEEEEeCCCCe-------
Confidence            345666654  357889999887655432211  111122222  3 3367777654    567788876431       


Q ss_pred             ccceeeEeeccCCCeEEEEEccCCCEEEEEeCC------CcEEEEeCCCCceEEE--EeccCCCeEEEEEccCCCEEEEe
Q 004214          369 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD------RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITA  440 (768)
Q Consensus       369 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~t~  440 (768)
                       ...............++.  -++++++.|+.+      ..+.+||+.+.+-...  +......-.++.  -++++++.|
T Consensus        82 -W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~G  156 (306)
T 3ii7_A           82 -WYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCG  156 (306)
T ss_dssp             -EEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEC
T ss_pred             -EEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEEC
Confidence             111111111111112222  267788888765      4688999887643221  111111112222  256777776


Q ss_pred             eC---------CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCC-----CcEEEEECCCCeEEEE--ecc
Q 004214          441 SG---------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGECIAT--YDK  504 (768)
Q Consensus       441 ~~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~  504 (768)
                      +.         -..+.+||+.+.+-...-..........+..-+++.++.|+.+     ..+.+||+.+.+-...  +..
T Consensus       157 G~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~  236 (306)
T 3ii7_A          157 GSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW  236 (306)
T ss_dssp             CEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC
T ss_pred             CCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC
Confidence            53         3458899987764222111111111111122366667777654     3588999988754332  111


Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCH
Q 004214          505 HEDKIWALAVGKKTEMFATGGSD-----ALVNLWHDSTA  538 (768)
Q Consensus       505 ~~~~v~~l~~s~~~~~l~s~~~d-----g~v~vw~~~~~  538 (768)
                      ......++.+  ++..++.||.+     ..+.+||+.+.
T Consensus       237 ~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          237 KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            1112222333  67788888754     35777887653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.22  E-value=0.027  Score=55.56  Aligned_cols=217  Identities=15%  Similarity=0.166  Sum_probs=106.5

Q ss_pred             CcEEEEECCCceeeee--eeCCccceEEEeeeeecCCCEEEEEEeCC-----CeEEEEeCCCce---EEEeee--cccCc
Q 004214          262 EQVQVYDLSSMSCSYV--LAGHSEIVLCLDTCALSSGKILIVTGSKD-----NSVRLWDSESRC---CVGVGT--GHMGA  329 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~---~~~~~~--~~~~~  329 (768)
                      ..+.+||..+.+-...  +........+    ... ++.+++.|+.+     ..+.+||..+++   ......  .....
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~----~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~  105 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVAS----VSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL  105 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEE----EEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccE----EEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc
Confidence            4788899887653322  1111111111    112 34456777654     468999988765   333221  11111


Q ss_pred             EEEEEEecCCCcEEEEEeCC-----CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC---
Q 004214          330 VGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD---  401 (768)
Q Consensus       330 v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---  401 (768)
                      -.++.+  + ..+++.|+.+     ..+.+||+....        ...............++.  .++++++.|+.+   
T Consensus       106 ~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~--------W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~  172 (301)
T 2vpj_A          106 AGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQ--------WSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLN  172 (301)
T ss_dssp             CEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTE--------EEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSC
T ss_pred             eeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCe--------EEECCCCCCCcccceEEE--ECCEEEEECCCCCCc
Confidence            122222  3 3466666643     357788876431        111111111111112222  267788887765   


Q ss_pred             --CcEEEEeCCCCceEEE--EeccCCCeEEEEEccCCCEEEEeeCC-----CcEEEEeCCCCceeEEeecCCCcEEEEEE
Q 004214          402 --RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGD-----KTIKIWSISDGSCLKTFEGHTSSVLRASF  472 (768)
Q Consensus       402 --g~i~i~d~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~t~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  472 (768)
                        ..+.+||+.+.+-...  +........++.+  ++++++.|+.+     ..+.+||+.+.+-...-..........+.
T Consensus       173 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~  250 (301)
T 2vpj_A          173 ILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT  250 (301)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             ccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE
Confidence              3588999877643322  1111111122222  56777777754     46899999876432221111111111122


Q ss_pred             EeCCCEEEEEeCC-----CcEEEEECCCCeE
Q 004214          473 LTRGAQIVSCGAD-----GLVKLWTVRTGEC  498 (768)
Q Consensus       473 s~~~~~l~s~~~d-----g~i~iwd~~~~~~  498 (768)
                      .-+++.++.|+.+     ..+.+||+.+.+-
T Consensus       251 ~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  281 (301)
T 2vpj_A          251 VLRGRLYAIAGYDGNSLLSSIECYDPIIDSW  281 (301)
T ss_dssp             EETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred             EECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence            2367777777765     3578888877653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.12  E-value=0.051  Score=53.60  Aligned_cols=218  Identities=13%  Similarity=0.150  Sum_probs=105.7

Q ss_pred             CcEEEEECCCceeeee--eeCCccceEEEeeeeecCCCEEEEEEeCC-----CeEEEEeCCCceEEEeeecccC--cEEE
Q 004214          262 EQVQVYDLSSMSCSYV--LAGHSEIVLCLDTCALSSGKILIVTGSKD-----NSVRLWDSESRCCVGVGTGHMG--AVGA  332 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~--~v~~  332 (768)
                      ..+..||..+..-...  ++.....- ++   ... ++.+++.|+.+     ..+.+||..+.+..........  .-.+
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~---~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  104 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRA-GM---VYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGA  104 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSC-EE---EEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccc-eE---EEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEE
Confidence            4678888877653322  11111111 11   112 34456666654     3588999988765443221111  1122


Q ss_pred             EEEecCCCcEEEEEeCCC-----eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC------
Q 004214          333 VAFSKKLQNFLVSGSSDH-----TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD------  401 (768)
Q Consensus       333 ~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------  401 (768)
                      +.+  + ..+++.|+.++     .+..||+....        ...............++.  -++++++.|+.+      
T Consensus       105 ~~~--~-~~iyv~GG~~~~~~~~~~~~~d~~~~~--------W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~  171 (302)
T 2xn4_A          105 AVL--N-GLLYAVGGFDGSTGLSSVEAYNIKSNE--------WFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQC  171 (302)
T ss_dssp             EEE--T-TEEEEEEEECSSCEEEEEEEEETTTTE--------EEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEE
T ss_pred             EEE--C-CEEEEEcCCCCCccCceEEEEeCCCCe--------EeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCcc
Confidence            222  3 34667776553     46677766431        111100000011111222  266777777643      


Q ss_pred             -CcEEEEeCCCCceEEE--EeccCCCeEEEEEccCCCEEEEeeCC-----CcEEEEeCCCCceeEEeecCCCcEEEEEEE
Q 004214          402 -RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGD-----KTIKIWSISDGSCLKTFEGHTSSVLRASFL  473 (768)
Q Consensus       402 -g~i~i~d~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~t~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  473 (768)
                       ..+.+||+.+.+-...  +........++.+  ++++++.|+.+     ..+.+||+.+.+-...-.............
T Consensus       172 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~  249 (302)
T 2xn4_A          172 LSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA  249 (302)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             ccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE
Confidence             3588999877643221  1111111222222  57777777654     368899987764222111011111111222


Q ss_pred             eCCCEEEEEeCCC-----cEEEEECCCCeEE
Q 004214          474 TRGAQIVSCGADG-----LVKLWTVRTGECI  499 (768)
Q Consensus       474 ~~~~~l~s~~~dg-----~i~iwd~~~~~~~  499 (768)
                      .+++.++.|+.++     .+.+||+.+.+-.
T Consensus       250 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  280 (302)
T 2xn4_A          250 VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT  280 (302)
T ss_dssp             ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence            3677777777654     4889998876543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.10  E-value=0.13  Score=51.39  Aligned_cols=170  Identities=6%  Similarity=0.070  Sum_probs=100.7

Q ss_pred             CCCeEEEEeCCCCCCCCccccccceeeE----eeccCCCeEEEEEcc--CCC--EEEEEeC--CCcEEEEeCCCCc----
Q 004214          348 SDHTIKVWSFDGLSDDAEQPMNLKAKAV----VAAHGKDINSLAVAP--NDS--LVCTGSQ--DRTACVWRLPDLV----  413 (768)
Q Consensus       348 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~s~--~~~--~l~~~~~--dg~i~i~d~~~~~----  413 (768)
                      .+|.|.++|........      .....    .....-....+.+.+  ++.  ++++-..  +.+|.+|++....    
T Consensus        81 ~~G~I~~~d~~~~~~~~------~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~  154 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAV------SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLL  154 (355)
T ss_dssp             -CCEEEEEETTSSSCCE------EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEE
T ss_pred             CCCeEEEEecCCCCCce------EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEE
Confidence            68899999986422111      11111    111223556677655  343  3444333  4578888775432    


Q ss_pred             eEEEEecc-CCCeEEEEEccCCCEEEEeeC-----------------CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeC
Q 004214          414 SVVTFRGH-KRGIWSVEFSPVDQVVITASG-----------------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR  475 (768)
Q Consensus       414 ~~~~~~~~-~~~v~~v~~s~~~~~l~t~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  475 (768)
                      .+..+.+. -...+.+++.++|.+.++...                 .|.|.-+|.  ++ +..+...-...+.++|+||
T Consensus       155 ~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spD  231 (355)
T 3sre_A          155 HLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPD  231 (355)
T ss_dssp             EEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTT
T ss_pred             EEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCC
Confidence            22333332 235789999999998887541                 244555554  33 2333333456788999999


Q ss_pred             CCEEEEEeC-CCcEEEEECCC-CeE--EEEeccCCCcEEEEEEcC-CCCEEEEEeCC
Q 004214          476 GAQIVSCGA-DGLVKLWTVRT-GEC--IATYDKHEDKIWALAVGK-KTEMFATGGSD  527 (768)
Q Consensus       476 ~~~l~s~~~-dg~i~iwd~~~-~~~--~~~~~~~~~~v~~l~~s~-~~~~l~s~~~d  527 (768)
                      ++.|+.+.. .+.|..|++.. ++.  ...+ ...+..-.+++.+ +|++++++.-+
T Consensus       232 g~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          232 GKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             CCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence            998877654 67899999863 332  2234 2356678899999 59988877644

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.06  E-value=0.035  Score=55.21  Aligned_cols=210  Identities=10%  Similarity=0.105  Sum_probs=101.0

Q ss_pred             EEEEEeCCCeEEEEeCCCceEEEe-eecccCcEEEEEEecCCCcEEEEEeC-----C------CeEEEEeCCCCCCCCcc
Q 004214          299 LIVTGSKDNSVRLWDSESRCCVGV-GTGHMGAVGAVAFSKKLQNFLVSGSS-----D------HTIKVWSFDGLSDDAEQ  366 (768)
Q Consensus       299 ~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~~~-----d------g~i~iwd~~~~~~~~~~  366 (768)
                      +++.|+  ..+..||..+++.... +..........+...+ ..+++.|+.     .      ..+..||.....-    
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W----   79 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW----   79 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE----
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC-CEEEEEcCcccCCCCCccccccceEEecCCCCeE----
Confidence            355555  5799999998875431 1111122222233334 346777773     1      1266777654311    


Q ss_pred             ccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC--------CcEEEEeCCCCceEE--EEeccCCCeEEEEEccCCCE
Q 004214          367 PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD--------RTACVWRLPDLVSVV--TFRGHKRGIWSVEFSPVDQV  436 (768)
Q Consensus       367 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~~~~~~--~~~~~~~~v~~v~~s~~~~~  436 (768)
                          ...............+.  -++++++.|+.+        ..+.+||..+.+-..  .+......- +++. -++++
T Consensus        80 ----~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~i  151 (315)
T 4asc_A           80 ----LGMPPLPSPRCLFGLGE--ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLS-HMDLV  151 (315)
T ss_dssp             ----EECCCBSSCEESCEEEE--ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEE
T ss_pred             ----EECCCCCcchhceeEEE--ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEE-ECCEE
Confidence                00000000000111122  266777777742        358899987764221  111111111 2222 35677


Q ss_pred             EEEeeC-C-----CcEEEEeCCCCce--eEEeecCCCcEEEEEEEeCCCEEEEEeCCC-----cEEEEECCCCeEEEEec
Q 004214          437 VITASG-D-----KTIKIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGADG-----LVKLWTVRTGECIATYD  503 (768)
Q Consensus       437 l~t~~~-d-----~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~  503 (768)
                      ++.|+. +     ..+.+||+.+.+-  +..+......-  .+..-+++.++.|+.++     .+.+||+.+.+-...-.
T Consensus       152 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~  229 (315)
T 4asc_A          152 YVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLF--GATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA  229 (315)
T ss_dssp             EEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSC--EEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC
T ss_pred             EEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhce--EEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCC
Confidence            777765 2     4688999876532  22121111111  12223667777777654     48889998875443321


Q ss_pred             cCC--CcEEEEEEcCCCCEEEEEeCC
Q 004214          504 KHE--DKIWALAVGKKTEMFATGGSD  527 (768)
Q Consensus       504 ~~~--~~v~~l~~s~~~~~l~s~~~d  527 (768)
                      ...  ....++.+  +++.++.||.+
T Consensus       230 ~p~~r~~~~~~~~--~~~l~v~GG~~  253 (315)
T 4asc_A          230 FPQERSSLSLVSL--VGTLYAIGGFA  253 (315)
T ss_dssp             CSSCCBSCEEEEE--TTEEEEEEEEE
T ss_pred             CCCcccceeEEEE--CCEEEEECCcc
Confidence            111  11122222  66777777764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.01  E-value=0.27  Score=49.50  Aligned_cols=240  Identities=10%  Similarity=0.088  Sum_probs=126.1

Q ss_pred             eEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEee-------ecccCcEEEEEEecC---CCcEEEEEeC------
Q 004214          285 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG-------TGHMGAVGAVAFSKK---LQNFLVSGSS------  348 (768)
Q Consensus       285 v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~~~~---~~~~l~s~~~------  348 (768)
                      ...++  +.+++.. ++.+...|.|++++.. +.....+       .........++++|+   +..+.++-+.      
T Consensus        20 P~~i~--~~pdG~~-l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           20 PWALA--FLPDNHG-MLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             EEEEE--ECSTTCC-EEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             cEEEE--EcCCCCE-EEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            44555  6677763 3445567999999854 3221111       112345688999995   4444444333      


Q ss_pred             -CCeEEEEeCCCCCCCCccccccceee-Eee---ccCCCeEEEEEccCCCEEEEEeCC-------------CcEEEEeCC
Q 004214          349 -DHTIKVWSFDGLSDDAEQPMNLKAKA-VVA---AHGKDINSLAVAPNDSLVCTGSQD-------------RTACVWRLP  410 (768)
Q Consensus       349 -dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~---~~~~~i~~~~~s~~~~~l~~~~~d-------------g~i~i~d~~  410 (768)
                       ...|..|++........   ...... ...   ........++|.|+|.+.++.+..             |.|.-++..
T Consensus        96 ~~~~v~r~~~~~~~~~~~---~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d  172 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVT---DFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ  172 (353)
T ss_dssp             EEEEEEEEEECTTSSBEE---EEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred             ceeEEEEEEECCCCCCCC---ceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence             23455566543211000   000000 000   111224679999999766665432             456666654


Q ss_pred             CC-------------ceEEEEeccCCCeEEEEEcc-CCCEEEEeeC-CCcEEEEeCCCC---------------------
Q 004214          411 DL-------------VSVVTFRGHKRGIWSVEFSP-VDQVVITASG-DKTIKIWSISDG---------------------  454 (768)
Q Consensus       411 ~~-------------~~~~~~~~~~~~v~~v~~s~-~~~~l~t~~~-d~~i~iwd~~~~---------------------  454 (768)
                      ..             .....-.++ .....++|+| +++++++-.. ++.=.|.-+..+                     
T Consensus       173 G~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~  251 (353)
T 2g8s_A          173 GEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE  251 (353)
T ss_dssp             SCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred             CCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence            32             111111233 3467899999 5655554322 111122212111                     


Q ss_pred             ----------ceeEEeecCCCcEEEEEEEe-------CCCEEEEEeCCCcEEEEECCCCeEEEE--e-ccCCCcEEEEEE
Q 004214          455 ----------SCLKTFEGHTSSVLRASFLT-------RGAQIVSCGADGLVKLWTVRTGECIAT--Y-DKHEDKIWALAV  514 (768)
Q Consensus       455 ----------~~~~~~~~~~~~v~~~~~s~-------~~~~l~s~~~dg~i~iwd~~~~~~~~~--~-~~~~~~v~~l~~  514 (768)
                                .++..+. +......+.|..       +|.++++.-..+.|...++..++.+..  + ......+..+++
T Consensus       252 ~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~  330 (353)
T 2g8s_A          252 AKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRT  330 (353)
T ss_dssp             CCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEE
T ss_pred             ccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEE
Confidence                      1122232 334677788864       466777666677888888876654432  2 223457899999


Q ss_pred             cCCCCEEEEEe-CCCcEEEEEc
Q 004214          515 GKKTEMFATGG-SDALVNLWHD  535 (768)
Q Consensus       515 s~~~~~l~s~~-~dg~v~vw~~  535 (768)
                      .|||.++++.. .+|  +||++
T Consensus       331 ~pdG~lyv~td~~~g--~I~ri  350 (353)
T 2g8s_A          331 GPDGYLYVLTDESSG--ELLKV  350 (353)
T ss_dssp             CTTSCEEEEECSTTE--EEEEE
T ss_pred             CCCCcEEEEEeCCCC--EEEEE
Confidence            99999776543 344  55554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.00  E-value=0.13  Score=51.30  Aligned_cols=189  Identities=13%  Similarity=0.107  Sum_probs=109.1

Q ss_pred             CCCeEEEEeCCC--ceEEE-eeec-----ccCcEEEEEEec--CCCc-EEEEEeC--CCeEEEEeCCCCCCCCccccccc
Q 004214          305 KDNSVRLWDSES--RCCVG-VGTG-----HMGAVGAVAFSK--KLQN-FLVSGSS--DHTIKVWSFDGLSDDAEQPMNLK  371 (768)
Q Consensus       305 ~dg~i~iwd~~~--~~~~~-~~~~-----~~~~v~~~~~~~--~~~~-~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~  371 (768)
                      .+|.|.++|..+  .+... .+.+     .......+.+.+  ++.. ++++-..  +.+|.+|++.....      ...
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~------~~~  154 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK------SLL  154 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT------EEE
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC------EEE
Confidence            689999999873  22211 1222     233566777765  3442 3444333  57888888764321      111


Q ss_pred             eeeEeec-cCCCeEEEEEccCCCEEEEEeC-----------------CCcEEEEeCCCCceEEEEeccCCCeEEEEEccC
Q 004214          372 AKAVVAA-HGKDINSLAVAPNDSLVCTGSQ-----------------DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV  433 (768)
Q Consensus       372 ~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~-----------------dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~  433 (768)
                      ......+ .-...+.+++.++|.+.++...                 .|.|..++.  ++. ..+...-...+.++|+||
T Consensus       155 ~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spD  231 (355)
T 3sre_A          155 HLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPD  231 (355)
T ss_dssp             EEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTT
T ss_pred             EEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCC
Confidence            1112211 2346789999999988777541                 244555554  332 223323345688999999


Q ss_pred             CCEEEEee-CCCcEEEEeCCC-Cce--eEEeecCCCcEEEEEEEe-CCCEEEEEeCCC-cEEEEECC--CCeEEEEec
Q 004214          434 DQVVITAS-GDKTIKIWSISD-GSC--LKTFEGHTSSVLRASFLT-RGAQIVSCGADG-LVKLWTVR--TGECIATYD  503 (768)
Q Consensus       434 ~~~l~t~~-~d~~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg-~i~iwd~~--~~~~~~~~~  503 (768)
                      ++.|+.+. ..+.|..|++.. +..  .+.+ ......-.+++.+ +|++.+++..+| .|..|+..  .+..+..+.
T Consensus       232 g~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          232 GKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             CCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence            98777664 468899999863 332  2334 2345667788888 598877665443 45445543  245555554

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.94  E-value=0.095  Score=51.71  Aligned_cols=223  Identities=10%  Similarity=0.103  Sum_probs=111.0

Q ss_pred             EEEEEeC--CCcEEEEECCCceeeee--eeCCccceEEEeeeeecCCCEEEEEEeCC----CeEEEEeCCCceEEEeeec
Q 004214          254 YLAVATN--IEQVQVYDLSSMSCSYV--LAGHSEIVLCLDTCALSSGKILIVTGSKD----NSVRLWDSESRCCVGVGTG  325 (768)
Q Consensus       254 ~l~~~~~--~~~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~  325 (768)
                      +++.|+.  ...+.+||..+.+-...  +........+    ... ++.+++.|+.+    ..+.+||..+++.......
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~----~~~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~   88 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAAC----VFW-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP   88 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEE----EEE-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEE----EEE-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence            4455543  36788999887654322  1111111111    112 34456777654    6788999988765443222


Q ss_pred             ccC--cEEEEEEecCCCcEEEEEeCC------CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEE
Q 004214          326 HMG--AVGAVAFSKKLQNFLVSGSSD------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT  397 (768)
Q Consensus       326 ~~~--~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  397 (768)
                      ...  .-.++.+  + ..+++.|+.+      ..+.+||.....        ...............++.  -++++++.
T Consensus        89 p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~--------W~~~~~~p~~r~~~~~~~--~~~~iyv~  155 (306)
T 3ii7_A           89 PTPRDSLAACAA--E-GKIYTSGGSEVGNSALYLFECYDTRTES--------WHTKPSMLTQRCSHGMVE--ANGLIYVC  155 (306)
T ss_dssp             SSCCBSCEEEEE--T-TEEEEECCBBTTBSCCCCEEEEETTTTE--------EEEECCCSSCCBSCEEEE--ETTEEEEE
T ss_pred             CccccceeEEEE--C-CEEEEECCCCCCCcEeeeEEEEeCCCCc--------eEeCCCCcCCcceeEEEE--ECCEEEEE
Confidence            111  1122222  3 3366777655      457888876431        111000000001111222  36677777


Q ss_pred             EeC---------CCcEEEEeCCCCceEEE--EeccCCCeEEEEEccCCCEEEEeeCC-----CcEEEEeCCCCc--eeEE
Q 004214          398 GSQ---------DRTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGD-----KTIKIWSISDGS--CLKT  459 (768)
Q Consensus       398 ~~~---------dg~i~i~d~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~t~~~d-----~~i~iwd~~~~~--~~~~  459 (768)
                      |+.         -..+.+||+.+.+-...  +......-..+.+  ++++++.|+.+     ..+.+||+.+.+  .+..
T Consensus       156 GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~  233 (306)
T 3ii7_A          156 GGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP  233 (306)
T ss_dssp             CCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCC
T ss_pred             CCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC
Confidence            764         34588999887643221  1111111122222  56777777653     458899987753  2222


Q ss_pred             eecCCCcEEEEEEEeCCCEEEEEeCC-----CcEEEEECCCCeE
Q 004214          460 FEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGEC  498 (768)
Q Consensus       460 ~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~  498 (768)
                      +.........+.  -+++.++.|+.+     ..+.+||+.+.+-
T Consensus       234 ~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W  275 (306)
T 3ii7_A          234 MPWKGVTVKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETDKW  275 (306)
T ss_dssp             CSCCBSCCEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred             CCCCccceeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence            221111122222  266777777754     4588889887653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.90  E-value=0.062  Score=54.10  Aligned_cols=144  Identities=11%  Similarity=0.066  Sum_probs=99.6

Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCCCCceEEEEecc----CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc-------
Q 004214          387 AVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH----KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS-------  455 (768)
Q Consensus       387 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~-------  455 (768)
                      ..+.+|..++++- ++.|+.-++......+.+...    -..|..+..+|+|++||..+. ..|.|-.+..+.       
T Consensus        27 ~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~  104 (452)
T 3pbp_A           27 FSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVS  104 (452)
T ss_dssp             EEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred             EEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccc
Confidence            3445666666654 477888887754444444433    236888999999999999865 789999887332       


Q ss_pred             -----eeEEeec------CCCcEEEEEEEeC---CCEEEEEeCCCcEEEEECCCC--eEEEEec---------cCCCcEE
Q 004214          456 -----CLKTFEG------HTSSVLRASFLTR---GAQIVSCGADGLVKLWTVRTG--ECIATYD---------KHEDKIW  510 (768)
Q Consensus       456 -----~~~~~~~------~~~~v~~~~~s~~---~~~l~s~~~dg~i~iwd~~~~--~~~~~~~---------~~~~~v~  510 (768)
                           ..+.+.-      ...+|..+.|+|-   +..|++-..|+.|++||+...  ++. .+.         .+...|.
T Consensus       105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~  183 (452)
T 3pbp_A          105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT  183 (452)
T ss_dssp             HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred             cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence                 1123331      3567999999984   568999999999999999752  222 232         2336788


Q ss_pred             EEEEcCCCCEEEEEe--CCCcEEEE
Q 004214          511 ALAVGKKTEMFATGG--SDALVNLW  533 (768)
Q Consensus       511 ~l~~s~~~~~l~s~~--~dg~v~vw  533 (768)
                      +++|.+++-.|...+  .+|.|+-.
T Consensus       184 S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          184 DLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEEEcCCCcEEEEEecCCCCCEEEE
Confidence            999999887777655  77877543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.87  E-value=0.046  Score=54.11  Aligned_cols=223  Identities=9%  Similarity=0.060  Sum_probs=108.8

Q ss_pred             CEEEEEEeCC----CeEEEEeCCCceEEEeeecccCcE-EEEEEecCCCcEEEEEeC----C-----CeEEEEeCCCCCC
Q 004214          297 KILIVTGSKD----NSVRLWDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSGSS----D-----HTIKVWSFDGLSD  362 (768)
Q Consensus       297 ~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~----d-----g~i~iwd~~~~~~  362 (768)
                      +.+++.|+.+    ..+.+||..+++....-....... .+++.. + ..+++.|+.    +     ..+.+||.....-
T Consensus        25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W  102 (308)
T 1zgk_A           25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-G-GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW  102 (308)
T ss_dssp             CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-T-TEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred             CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-C-CEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence            3345555532    468899988876554322111111 122222 3 336666665    2     3577788764311


Q ss_pred             CCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCceEEE--EeccCCCeEEEEEccCCC
Q 004214          363 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-----RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQ  435 (768)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~v~~v~~s~~~~  435 (768)
                      .        .............++.+  ++++++.|+.+     ..+.+||+.+.+-...  +......-.++.+  ++.
T Consensus       103 ~--------~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~  170 (308)
T 1zgk_A          103 S--------PCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRL  170 (308)
T ss_dssp             E--------ECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE
T ss_pred             e--------ECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCE
Confidence            0        00000000111122222  67777777644     3588899876542221  1111112222223  577


Q ss_pred             EEEEeeCC-----CcEEEEeCCCCcee--EEeecCCCcEEEEEEEeCCCEEEEEeCC-----CcEEEEECCCCeEEEEec
Q 004214          436 VVITASGD-----KTIKIWSISDGSCL--KTFEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGECIATYD  503 (768)
Q Consensus       436 ~l~t~~~d-----~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~  503 (768)
                      +++.|+.+     ..+.+||+.+.+-.  ..+.........+.  -+++.++.|+.+     ..+.+||+.+.+-...-.
T Consensus       171 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~  248 (308)
T 1zgk_A          171 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP  248 (308)
T ss_dssp             EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred             EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC
Confidence            77777654     45889998765422  11111111111122  266677777664     468999998876443221


Q ss_pred             cCC--CcEEEEEEcCCCCEEEEEeCCC-----cEEEEEcCC
Q 004214          504 KHE--DKIWALAVGKKTEMFATGGSDA-----LVNLWHDST  537 (768)
Q Consensus       504 ~~~--~~v~~l~~s~~~~~l~s~~~dg-----~v~vw~~~~  537 (768)
                      ...  .....+.+  +++.++.||.++     .+.+||+.+
T Consensus       249 ~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          249 MKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             CSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             CCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCC
Confidence            111  11122222  677777777543     467777665

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.86  E-value=0.57  Score=48.80  Aligned_cols=264  Identities=12%  Similarity=0.069  Sum_probs=148.9

Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeeC------------------------------CccceEEEeeeeecCCCEEEEEE
Q 004214          254 YLAVATNIEQVQVYDLSSMSCSYVLAG------------------------------HSEIVLCLDTCALSSGKILIVTG  303 (768)
Q Consensus       254 ~l~~~~~~~~i~i~d~~~~~~~~~~~~------------------------------~~~~v~~l~~~~~~~~~~~l~~~  303 (768)
                      .+.+|+.+|+|+++-+.+++.+..+.-                              |......-.  -.-+|+++++-.
T Consensus        72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~td--g~yDGrylfiNd  149 (638)
T 3sbq_A           72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTD--GKYDGKYLFIND  149 (638)
T ss_dssp             EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEET--TEEEEEEEEEEE
T ss_pred             EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccC--CeeeeEEEEEec
Confidence            466778899999999999987765531                              111111111  112344544444


Q ss_pred             eCCCeEEEEeCCCceEEEeee-cccCcEEEEEEe--cCCCcEEEEEeCCCeEEEEeCCCCCCCC-ccccccceeeEeec-
Q 004214          304 SKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFS--KKLQNFLVSGSSDHTIKVWSFDGLSDDA-EQPMNLKAKAVVAA-  378 (768)
Q Consensus       304 ~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~-  378 (768)
                      -.+..|-..++...++-..+. .....+..+++-  |+ ..++++++....= +=  ..+.... ..+........... 
T Consensus       150 kan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~-T~yv~~~~e~~~P-~p--ndg~~~~~~~~~~y~~f~~iD~~  225 (638)
T 3sbq_A          150 KANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPH-TKYVFANAEFIIP-HP--NDGKVFDLQDENSYTMYNAIDAE  225 (638)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSB-CCEEEEEECSCEE-SS--CSSSCCCTTSTTEEEEEEEEETT
T ss_pred             CCCcceEEEECCcEeeceeEeCCCCcCcccccccccCC-ccEEEecceeecc-CC--CCCcccccCChhhceEEEEEcCC
Confidence            456788888888877766554 345678888886  55 4477777653211 00  0000000 00000000000001 


Q ss_pred             ---------cCCCeEEEEEccCCCEEEEEeCCC---------------cEEEEeCC-------CC-----c--eEEEEec
Q 004214          379 ---------HGKDINSLAVAPNDSLVCTGSQDR---------------TACVWRLP-------DL-----V--SVVTFRG  420 (768)
Q Consensus       379 ---------~~~~i~~~~~s~~~~~l~~~~~dg---------------~i~i~d~~-------~~-----~--~~~~~~~  420 (768)
                               -......+..+++|++.++.+.+.               .+.++++.       .+     .  -+..+.+
T Consensus       226 tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~  305 (638)
T 3sbq_A          226 TMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDG  305 (638)
T ss_dssp             TCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred             ccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcc
Confidence                     122333455677888888877652               25555531       00     0  1112222


Q ss_pred             ---------------cCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCC------ce-------eEEeecCCCcEEEEE
Q 004214          421 ---------------HKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDG------SC-------LKTFEGHTSSVLRAS  471 (768)
Q Consensus       421 ---------------~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~------~~-------~~~~~~~~~~v~~~~  471 (768)
                                     -......+.++|||+++++++ .+.++.++|+...      +.       ....+ -.-.....+
T Consensus       306 ~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~  384 (638)
T 3sbq_A          306 RKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTT  384 (638)
T ss_dssp             SCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEE
T ss_pred             ccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEE
Confidence                           223345688999999888766 4789999998731      11       22222 234567789


Q ss_pred             EEeCCCEEEEEeCCCcEEEEECCCC----------eEEEEeccCCCcEEEEEE------cCCCCEEEEEe
Q 004214          472 FLTRGAQIVSCGADGLVKLWTVRTG----------ECIATYDKHEDKIWALAV------GKKTEMFATGG  525 (768)
Q Consensus       472 ~s~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~l~~------s~~~~~l~s~~  525 (768)
                      |.++|+-..+-.-|..|.-|++...          ..+..+..|-.+-- +..      .|+|++|++..
T Consensus       385 Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH-~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          385 FDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGH-LHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             ECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEE-EEETTTTSTTCCSCEEEEEE
T ss_pred             ECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcc-cccCCCccCCCCccEEEEec
Confidence            9999955555567999999999753          46666766654432 222      57888888865

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.81  E-value=0.51  Score=47.46  Aligned_cols=233  Identities=13%  Similarity=0.127  Sum_probs=125.0

Q ss_pred             ceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce-EEEee---ecccCcEEEEEEecC---CCcEEEEEeC---C----
Q 004214          284 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-CVGVG---TGHMGAVGAVAFSKK---LQNFLVSGSS---D----  349 (768)
Q Consensus       284 ~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~---~~~~~~v~~~~~~~~---~~~~l~s~~~---d----  349 (768)
                      ....++  +.+++.  ++.+..+|.|++++. ++. .+..+   .........++++|+   +..+.++-+.   +    
T Consensus        30 ~P~~ia--~~pdG~--l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           30 VPWSIA--PLGGGR--YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CEEEEE--EEETTE--EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCeEEE--EcCCCe--EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            345565  556654  555566799999974 444 22221   112346789999997   4544454442   3    


Q ss_pred             CeEEEEeCCCCCCCCcccccccee-eEee-ccCCCeEEEEEccCCCEEEEEeC-------------CCcEEEEeCCCC--
Q 004214          350 HTIKVWSFDGLSDDAEQPMNLKAK-AVVA-AHGKDINSLAVAPNDSLVCTGSQ-------------DRTACVWRLPDL--  412 (768)
Q Consensus       350 g~i~iwd~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~~~~~s~~~~~l~~~~~-------------dg~i~i~d~~~~--  412 (768)
                      +.|..|+.........   ..+.. .... ........++|.|+|.++++.+.             .|.|..++....  
T Consensus       105 ~~v~r~~~~~~~~~~~---~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p  181 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLK---EVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP  181 (354)
T ss_dssp             EEEEEEEECSSSCCEE---EEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred             eEEEEEEECCCCcCcC---ccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence            5677777653210000   00111 1011 11123467999999987776432             245655554321  


Q ss_pred             ------ceEEEEeccCCCeEEEEEcc-CCCEEEEeeCCC---cEEEEeCCC--------C--------ceeEEeecCCCc
Q 004214          413 ------VSVVTFRGHKRGIWSVEFSP-VDQVVITASGDK---TIKIWSISD--------G--------SCLKTFEGHTSS  466 (768)
Q Consensus       413 ------~~~~~~~~~~~~v~~v~~s~-~~~~l~t~~~d~---~i~iwd~~~--------~--------~~~~~~~~~~~~  466 (768)
                            .......++. ....++|+| +++++++-....   .|.+..--.        +        .++..+......
T Consensus       182 ~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~a  260 (354)
T 3a9g_A          182 ADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWA  260 (354)
T ss_dssp             TTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCC
T ss_pred             CCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcC
Confidence                  1111123343 346899999 677665543322   233322100        0        123333122345


Q ss_pred             EEEEEEE-------eCCCEEEEEeCCCcEEEEECCCC-eEE--EEe-ccCCCcEEEEEEcCCCCEEEEEe
Q 004214          467 VLRASFL-------TRGAQIVSCGADGLVKLWTVRTG-ECI--ATY-DKHEDKIWALAVGKKTEMFATGG  525 (768)
Q Consensus       467 v~~~~~s-------~~~~~l~s~~~dg~i~iwd~~~~-~~~--~~~-~~~~~~v~~l~~s~~~~~l~s~~  525 (768)
                      ...+.|.       .+|.++++.-..+.|...++... +..  ..+ ......+..+++.|||.++++..
T Consensus       261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            7788884       46766666666778888888753 332  233 22245789999999998777764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.75  E-value=0.12  Score=51.27  Aligned_cols=141  Identities=11%  Similarity=0.168  Sum_probs=72.1

Q ss_pred             CCCEEEEEeCC-------CcEEEEeCCCCceEEE--EeccCCCeEEEEEccCCCEEEEeeC------CCcEEEEeCCCCc
Q 004214          391 NDSLVCTGSQD-------RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASG------DKTIKIWSISDGS  455 (768)
Q Consensus       391 ~~~~l~~~~~d-------g~i~i~d~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~t~~~------d~~i~iwd~~~~~  455 (768)
                      ++++++.|+.+       ..+.+||+.+.+-...  +......- +++. .++.+++.|+.      -..+.+||+.+.+
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence            67788888764       2478888876543221  11111111 2222 45777777764      2358999987764


Q ss_pred             eeEE--eecCCCcEEEEEEEeCCCEEEEEeCC-----CcEEEEECCCCeEEEE--eccCCCcEEEEEEcCCCCEEEEEeC
Q 004214          456 CLKT--FEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGECIAT--YDKHEDKIWALAVGKKTEMFATGGS  526 (768)
Q Consensus       456 ~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~l~~s~~~~~l~s~~~  526 (768)
                      -...  +....... +++ .-+++.++.|+.+     ..+.+||+.+.+-...  +.........+.  -++..++.||.
T Consensus       187 W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~  262 (318)
T 2woz_A          187 WKDLAPMKTPRSMF-GVA-IHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGF  262 (318)
T ss_dssp             EEEECCCSSCCBSC-EEE-EETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCB
T ss_pred             EEECCCCCCCcccc-eEE-EECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCe
Confidence            2221  11111111 122 2366677777653     2477899887654332  111111112222  25677777775


Q ss_pred             C--------------CcEEEEEcCC
Q 004214          527 D--------------ALVNLWHDST  537 (768)
Q Consensus       527 d--------------g~v~vw~~~~  537 (768)
                      +              ..+.+||+.+
T Consensus       263 ~~~~~~~~~~~~~~~~~v~~yd~~~  287 (318)
T 2woz_A          263 AMIQLESKEFAPTEVNDIWKYEDDK  287 (318)
T ss_dssp             CCBC----CCBCCBCCCEEEEETTT
T ss_pred             eccCCCCceeccceeeeEEEEeCCC
Confidence            4              3467777665

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.72  E-value=0.13  Score=50.96  Aligned_cols=226  Identities=10%  Similarity=0.089  Sum_probs=106.5

Q ss_pred             EEEEEeCCCcEEEEECCCceeee-eeeCCccc-eEEEeeeeecCCCEEEEEEeC-----C------CeEEEEeCCCceEE
Q 004214          254 YLAVATNIEQVQVYDLSSMSCSY-VLAGHSEI-VLCLDTCALSSGKILIVTGSK-----D------NSVRLWDSESRCCV  320 (768)
Q Consensus       254 ~l~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~-v~~l~~~~~~~~~~~l~~~~~-----d------g~i~iwd~~~~~~~  320 (768)
                      +++.|+  ..+..||..+.+-.. .++..... -.++   ...++. +++.|+.     .      ..+..||..+++..
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~---~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~   80 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSL---VTKENQ-VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL   80 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEE---ECTTCC-EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEE---EEECCE-EEEEcCcccCCCCCccccccceEEecCCCCeEE
Confidence            344444  578999998876432 11111111 1122   223444 4666662     1      12778898887654


Q ss_pred             EeeecccCcE-EEEEEecCCCcEEEEEeCC--------CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccC
Q 004214          321 GVGTGHMGAV-GAVAFSKKLQNFLVSGSSD--------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN  391 (768)
Q Consensus       321 ~~~~~~~~~v-~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  391 (768)
                      .......... .+++.. + ..+++.|+.+        ..+.+||.....        .............. ++ ...+
T Consensus        81 ~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--------W~~~~~~p~~r~~~-~~-~~~~  148 (315)
T 4asc_A           81 GMPPLPSPRCLFGLGEA-L-NSIYVVGGREIKDGERCLDSVMCYDRLSFK--------WGESDPLPYVVYGH-TV-LSHM  148 (315)
T ss_dssp             ECCCBSSCEESCEEEEE-T-TEEEEECCEESSTTCCBCCCEEEEETTTTE--------EEECCCCSSCCBSC-EE-EEET
T ss_pred             ECCCCCcchhceeEEEE-C-CEEEEEeCCcCCCCCcccceEEEECCCCCc--------EeECCCCCCcccce-eE-EEEC
Confidence            3322111111 112222 3 3466666632        457788876431        00000000001111 12 2246


Q ss_pred             CCEEEEEeC-C-----CcEEEEeCCCCceEE--EEeccCCCeEEEEEccCCCEEEEeeCCC-----cEEEEeCCCCceeE
Q 004214          392 DSLVCTGSQ-D-----RTACVWRLPDLVSVV--TFRGHKRGIWSVEFSPVDQVVITASGDK-----TIKIWSISDGSCLK  458 (768)
Q Consensus       392 ~~~l~~~~~-d-----g~i~i~d~~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~t~~~d~-----~i~iwd~~~~~~~~  458 (768)
                      +++++.|+. +     ..+.+||+.+.+-..  .+......-.++.+  ++++++.|+.++     .+.+||+.+.+-..
T Consensus       149 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  226 (315)
T 4asc_A          149 DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAP  226 (315)
T ss_dssp             TEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred             CEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence            677788776 2     368899987754222  11111111122222  577777777654     58889987764222


Q ss_pred             EeecCCCcEEEEEEEeCCCEEEEEeCCC--------------cEEEEECCCCeEE
Q 004214          459 TFEGHTSSVLRASFLTRGAQIVSCGADG--------------LVKLWTVRTGECI  499 (768)
Q Consensus       459 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg--------------~i~iwd~~~~~~~  499 (768)
                      .-..........+..-+++.++.|+.++              .+.+||+.+.+-.
T Consensus       227 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~  281 (315)
T 4asc_A          227 FEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE  281 (315)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred             CCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence            1111111111112223666777776532              3677888776543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.69  E-value=0.62  Score=46.82  Aligned_cols=232  Identities=12%  Similarity=0.066  Sum_probs=117.8

Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceee--eeee---CCccceEEEeeeeecC---CCEEEEEEeCC-----C
Q 004214          241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS--YVLA---GHSEIVLCLDTCALSS---GKILIVTGSKD-----N  307 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~--~~~~---~~~~~v~~l~~~~~~~---~~~~l~~~~~d-----g  307 (768)
                      ....++|.+ ++. +.++...|.|++++  .+...  ..+.   ........++  +.++   ++.+.++-...     +
T Consensus        32 ~P~~ia~~p-dG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia--~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           32 VPWALAFLP-DGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLA--LHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             CEEEEEECT-TSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEE--ECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CceEEEEcC-CCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEE--ECCCCCCCCEEEEEEecCCCCCcc
Confidence            456888875 444 55556669999998  33321  1111   1234556665  5565   45544544432     6


Q ss_pred             eEEEEeCCCce-----E-EEeee---cccCcEEEEEEecCCCcEEEEEeC-------------CCeEEEEeCCCCCCCCc
Q 004214          308 SVRLWDSESRC-----C-VGVGT---GHMGAVGAVAFSKKLQNFLVSGSS-------------DHTIKVWSFDGLSDDAE  365 (768)
Q Consensus       308 ~i~iwd~~~~~-----~-~~~~~---~~~~~v~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~~~~~~  365 (768)
                      .|..|+...+.     . +..+.   ........++|.|+|. +.++.+.             .|.|.-++.+..- ...
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~-p~~  183 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEP-APG  183 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB-CTT
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCC-CCC
Confidence            78888876431     1 11122   1112236899999985 4444332             1455555544210 000


Q ss_pred             cccc----cceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCc--------EEEEeCCC----------------CceEE
Q 004214          366 QPMN----LKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRT--------ACVWRLPD----------------LVSVV  416 (768)
Q Consensus       366 ~~~~----~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~--------i~i~d~~~----------------~~~~~  416 (768)
                      .+..    ........++ .....++|+| ++.++++-.....        |.+.....                ..+..
T Consensus       184 npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~  262 (352)
T 2ism_A          184 NPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY  262 (352)
T ss_dssp             CTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred             CcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence            0000    0111112222 3357789999 6666555433333        33322111                01222


Q ss_pred             EEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce------eEEeecCCCcEEEEEEEeCCCEEEEEe
Q 004214          417 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC------LKTFEGHTSSVLRASFLTRGAQIVSCG  483 (768)
Q Consensus       417 ~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~s~~  483 (768)
                      .+ .+......++| .+|.++++....+.|...++.....      ...+......+..+++.|||...++..
T Consensus       263 ~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          263 FW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             EC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             ec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            22 22234567777 4677777666667788777754321      122222345788899999987666553

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.65  E-value=0.11  Score=51.40  Aligned_cols=226  Identities=12%  Similarity=0.140  Sum_probs=108.9

Q ss_pred             CCCEEEEEeC----CCcEEEEECCCceeeee--eeCCccceEEEeeeeecCCCEEEEEEeC----C-----CeEEEEeCC
Q 004214          251 EEQYLAVATN----IEQVQVYDLSSMSCSYV--LAGHSEIVLCLDTCALSSGKILIVTGSK----D-----NSVRLWDSE  315 (768)
Q Consensus       251 ~~~~l~~~~~----~~~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~~~l~~~~~----d-----g~i~iwd~~  315 (768)
                      ++.+++.|+.    ...+.+||..+.+-...  ++...... ++   ... ++.+++.|+.    +     ..+.+||..
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~---~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~   98 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AG---CVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPM   98 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EE---EEE-TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eE---EEE-CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence            3445555542    24688888877654332  11111111 11   112 3444666654    2     468899998


Q ss_pred             CceEEEeeeccc--CcEEEEEEecCCCcEEEEEeCC-----CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEE
Q 004214          316 SRCCVGVGTGHM--GAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV  388 (768)
Q Consensus       316 ~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  388 (768)
                      +.+.........  ..-.++.+  + ..+++.|+.+     ..+..||.....-        ..............++.+
T Consensus        99 ~~~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W--------~~~~~~p~~r~~~~~~~~  167 (308)
T 1zgk_A           99 TNQWSPCAPMSVPRNRIGVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEW--------HLVAPMLTRRIGVGVAVL  167 (308)
T ss_dssp             TTEEEECCCCSSCCBTCEEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEE--------EECCCCSSCCBSCEEEEE
T ss_pred             CCeEeECCCCCcCccccEEEEE--C-CEEEEEcCCCCCcccccEEEECCCCCeE--------eECCCCCccccceEEEEE
Confidence            876544322111  11122222  3 3366666543     3577788764311        000000000111122222


Q ss_pred             ccCCCEEEEEeCC-----CcEEEEeCCCCceEE--EEeccCCCeEEEEEccCCCEEEEeeCC-----CcEEEEeCCCCce
Q 004214          389 APNDSLVCTGSQD-----RTACVWRLPDLVSVV--TFRGHKRGIWSVEFSPVDQVVITASGD-----KTIKIWSISDGSC  456 (768)
Q Consensus       389 s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~t~~~d-----~~i~iwd~~~~~~  456 (768)
                        ++++++.|+.+     ..+.+||+.+.+-..  .+........++.+  ++++++.|+.+     ..+.+||+.+.+-
T Consensus       168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  243 (308)
T 1zgk_A          168 --NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW  243 (308)
T ss_dssp             --TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             --CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence              67777887754     358899987654221  11111111222333  57777777654     5689999877642


Q ss_pred             eE--EeecCCCcEEEEEEEeCCCEEEEEeCCC-----cEEEEECCCCeE
Q 004214          457 LK--TFEGHTSSVLRASFLTRGAQIVSCGADG-----LVKLWTVRTGEC  498 (768)
Q Consensus       457 ~~--~~~~~~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~  498 (768)
                      ..  .+....... +++ .-+++.++.|+.++     .+.+||+.+.+-
T Consensus       244 ~~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  290 (308)
T 1zgk_A          244 TFVAPMKHRRSAL-GIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDTW  290 (308)
T ss_dssp             EECCCCSSCCBSC-EEE-EETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             EECCCCCCCccce-EEE-EECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence            21  121111111 122 23666777777543     577888877653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.59  E-value=0.039  Score=54.64  Aligned_cols=232  Identities=10%  Similarity=0.057  Sum_probs=123.0

Q ss_pred             EEEEEeCCCeEEEEeCCCceEEEeeecc-cCcEEEEEEe--cCCCcEEEEE-eCCCeEEEEeCCCCCCCCccccccceee
Q 004214          299 LIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVGAVAFS--KKLQNFLVSG-SSDHTIKVWSFDGLSDDAEQPMNLKAKA  374 (768)
Q Consensus       299 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~  374 (768)
                      +++.++.||.|.-+|..+|+....+... ..++....-.  +.+...++.. +.||.+..++...+...  .+.....  
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~--~~~~~~~--   87 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK--LPLSIRQ--   87 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE--EEEEHHH--
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE--eeecccc--
Confidence            4889999999999999999999887754 1222221100  1112233333 58999999987643110  0000000  


Q ss_pred             EeeccCCCeEE---EEE-c----cCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCC-C------eEEEEEc-----cCC
Q 004214          375 VVAAHGKDINS---LAV-A----PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR-G------IWSVEFS-----PVD  434 (768)
Q Consensus       375 ~~~~~~~~i~~---~~~-s----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~------v~~v~~s-----~~~  434 (768)
                        .....++..   ..+ .    ..+..+++|+.+|.+...|+.+|+.+..+..... .      ..|....     ..+
T Consensus        88 --lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~  165 (339)
T 2be1_A           88 --LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE  165 (339)
T ss_dssp             --HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred             --ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence              001111211   000 0    1456788999999999999999999998864321 0      1111111     123


Q ss_pred             CEEEEeeCCCcEEEEeCCCCceeEEee-----cCCCc--EE-EEEEEeCCCEEEEEeCCCcEEEEECCCCeEEE-EeccC
Q 004214          435 QVVITASGDKTIKIWSISDGSCLKTFE-----GHTSS--VL-RASFLTRGAQIVSCGADGLVKLWTVRTGECIA-TYDKH  505 (768)
Q Consensus       435 ~~l~t~~~d~~i~iwd~~~~~~~~~~~-----~~~~~--v~-~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~  505 (768)
                      ..++.+..+..+.+.+ ++|+ +..+.     .+...  +. .-.++.++.+ +.++.||.|.-+|..+|..+. +.. -
T Consensus       166 ~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W~~~~-l  241 (339)
T 2be1_A          166 NMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARWVSPT-F  241 (339)
T ss_dssp             CEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEEECCC-C
T ss_pred             CeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEEEeec-C
Confidence            5677777777777766 4453 22111     10000  00 0000123555 457888889888888888766 322 2


Q ss_pred             CCcEE--------------EEEEcC----------CCCEEEEEeCCCcEEEEEcCCHHH
Q 004214          506 EDKIW--------------ALAVGK----------KTEMFATGGSDALVNLWHDSTAAE  540 (768)
Q Consensus       506 ~~~v~--------------~l~~s~----------~~~~l~s~~~dg~v~vw~~~~~~~  540 (768)
                      .+++.              -+.-.|          ++..++..+.+|.+.-+....-..
T Consensus       242 ~sPv~~~~dv~~~~~~g~~v~~~~P~~~~~~~~~~~~~v~v~~t~~G~~~Als~~~yp~  300 (339)
T 2be1_A          242 PGIIVGLFDVFNDLRTNENILVPHPFNPGDHESISSNKVYLDQTSNLSWFALSSQNFPS  300 (339)
T ss_dssp             SSCEEEEEEEEEETTTTEEEEEECCCCC--------CCEEEEECTTCCEEEEETTTCHH
T ss_pred             CCCeEEEEEEEEecCCCCEEEecCCCcccccccccCCeEEEEECCCCcEEEecCCCCce
Confidence            22322              122233          344455467799999888765443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.47  E-value=0.29  Score=57.19  Aligned_cols=243  Identities=11%  Similarity=0.143  Sum_probs=135.7

Q ss_pred             EEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc-eee
Q 004214          197 TVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-SCS  275 (768)
Q Consensus       197 ~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~  275 (768)
                      ..+|.. .+++.-....+.+|++.....-        .....+.+|.--.|.++  +.++..+. ..|+-|++... .+.
T Consensus        72 IMnP~~-~iiALrag~~lQiFnl~~k~kl--------ks~~~~e~VvfWkWis~--~~l~lVT~-~aVyHW~~~~~s~P~  139 (1630)
T 1xi4_A           72 IMNPAS-KVIALKAGKTLQIFNIEMKSKM--------KAHTMTDDVTFWKWISL--NTVALVTD-NAVYHWSMEGESQPV  139 (1630)
T ss_pred             ccCCCc-ceEEEecCCeEEEeehHHhhhh--------cccccCCCceEEEecCC--CeeEEEcC-CeEEEeccCCCCccH
Confidence            344544 4556666889999998754311        11123456777777644  35555554 68999999642 333


Q ss_pred             eeeeCC----ccceEEEeeeeecCCCEEEEEEe------CCCeEEEEeCCCceEEEeeecccCcEEEEEEe--cCCCcEE
Q 004214          276 YVLAGH----SEIVLCLDTCALSSGKILIVTGS------KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS--KKLQNFL  343 (768)
Q Consensus       276 ~~~~~~----~~~v~~l~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l  343 (768)
                      +.+.-|    ...|....  ..++.++++++|=      -.|.+.+|..+.+. .+.+.||.+....+...  +....++
T Consensus       140 k~fdR~~~L~~~QIinY~--~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~  216 (1630)
T 1xi4_A          140 KMFDRHSSLAGCQIINYR--TDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLF  216 (1630)
T ss_pred             HHHhcchhcccCeeEEee--eCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEE
Confidence            333333    22333333  6677777666653      35788899877543 33455665554444332  2212233


Q ss_pred             EEEeC---CCeEEEEeCCCCCCCCccccccceeeEee---ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 004214          344 VSGSS---DHTIKVWSFDGLSDDAEQPMNLKAKAVVA---AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT  417 (768)
Q Consensus       344 ~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~  417 (768)
                      +.+..   .+.+++-++...... ..++..+......   ...+-..++.+++.-..+..-+.-|.+++||+.++..+..
T Consensus       217 ~f~~~~~~g~kLhi~Ei~~~~~~-~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          217 CFAVRGQAGGKLHIIEVGTPPTG-NQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             EEEEecCCCceEEEEecCCCccC-CCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence            32222   268888888543111 1122222222111   2244556888899888888999999999999999988776


Q ss_pred             EeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCc
Q 004214          418 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS  455 (768)
Q Consensus       418 ~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~  455 (768)
                      -+-...+|...+.++...-++.....|.|.-..+....
T Consensus       296 ~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~  333 (1630)
T 1xi4_A          296 NRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (1630)
T ss_pred             ccccCCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence            55455555544444332223333355555555554433

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.39  E-value=0.3  Score=49.23  Aligned_cols=140  Identities=15%  Similarity=0.091  Sum_probs=88.3

Q ss_pred             CCeEEEEeCCCceEEEeeecc----cCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcc-c--cccceeeEeec
Q 004214          306 DNSVRLWDSESRCCVGVGTGH----MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ-P--MNLKAKAVVAA  378 (768)
Q Consensus       306 dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~--~~~~~~~~~~~  378 (768)
                      ++.||.-++......+.+...    -..+..+..+|+|. +|+.. .+..|.+-.++.+...... .  ..........+
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~  117 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGD-LLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSID  117 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSS-EEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCC-EEEEe-cCCeEEEEEecCccccCcccccccccceeEEEcC
Confidence            467777776643333333332    23578899999977 45444 5668999998843222211 0  01111111111


Q ss_pred             -----cCCCeEEEEEcc---CCCEEEEEeCCCcEEEEeCCCC--ceEEEEe---------ccCCCeEEEEEccCCCEEEE
Q 004214          379 -----HGKDINSLAVAP---NDSLVCTGSQDRTACVWRLPDL--VSVVTFR---------GHKRGIWSVEFSPVDQVVIT  439 (768)
Q Consensus       379 -----~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~---------~~~~~v~~v~~s~~~~~l~t  439 (768)
                           ...+|..+.|+|   ++..|++-..|+.|++||+...  ++. .+.         .....|.+++|.+++-.|..
T Consensus       118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv  196 (452)
T 3pbp_A          118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYC  196 (452)
T ss_dssp             GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred             CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence                 256799999999   4678999999999999999752  222 332         12357889999998877776


Q ss_pred             ee--CCCcEEE
Q 004214          440 AS--GDKTIKI  448 (768)
Q Consensus       440 ~~--~d~~i~i  448 (768)
                      .+  ..|.|+-
T Consensus       197 l~~t~~GDIYA  207 (452)
T 3pbp_A          197 LNTTEGGDIFA  207 (452)
T ss_dssp             EECTTSCEEEE
T ss_pred             EecCCCCCEEE
Confidence            44  7777764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.35  E-value=0.3  Score=48.37  Aligned_cols=218  Identities=12%  Similarity=0.116  Sum_probs=102.2

Q ss_pred             cEEEEECCCceeeee-eeCCc-cceEEEeeeeecCCCEEEEEEeC----CC-------eEEEEeCCCceEEEeeecccCc
Q 004214          263 QVQVYDLSSMSCSYV-LAGHS-EIVLCLDTCALSSGKILIVTGSK----DN-------SVRLWDSESRCCVGVGTGHMGA  329 (768)
Q Consensus       263 ~i~i~d~~~~~~~~~-~~~~~-~~v~~l~~~~~~~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~~~~~~~~  329 (768)
                      .+..||..+.+-... +.... ..-.++   ...++ .+++.|+.    ++       .+..||..+.+...........
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~---~~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r  100 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSI---VTQQN-QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR  100 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEE---ECSSS-CEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred             ceEEECCCCCceecccCCccCCccceEE---EEECC-EEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence            478899887765431 11101 111122   22334 44666662    12       2778898887654432211111


Q ss_pred             -EEEEEEecCCCcEEEEEeCC-------CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC
Q 004214          330 -VGAVAFSKKLQNFLVSGSSD-------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD  401 (768)
Q Consensus       330 -v~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  401 (768)
                       -.+++.. + ..+++.|+.+       ..+.+||.....-....+..    .....|     +++ ..++++++.|+.+
T Consensus       101 ~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p----~~r~~~-----~~~-~~~~~iyv~GG~~  168 (318)
T 2woz_A          101 CLFGLGEV-D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLP----IKVYGH-----NVI-SHNGMIYCLGGKT  168 (318)
T ss_dssp             CSCEEEEE-T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCS----SCEESC-----EEE-EETTEEEEECCEE
T ss_pred             cccceEEE-C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCC----Cccccc-----EEE-EECCEEEEEcCCC
Confidence             1122222 3 3466777653       24677777643110000000    000111     122 2467777777642


Q ss_pred             ------CcEEEEeCCCCceEEE--EeccCCCeEEEEEccCCCEEEEeeCC-----CcEEEEeCCCCce--eEEeecCCCc
Q 004214          402 ------RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGD-----KTIKIWSISDGSC--LKTFEGHTSS  466 (768)
Q Consensus       402 ------g~i~i~d~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~t~~~d-----~~i~iwd~~~~~~--~~~~~~~~~~  466 (768)
                            ..+.+||+.+.+-...  +........++.+  ++++++.|+.+     ..+.+||+.+.+-  +..+......
T Consensus       169 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~  246 (318)
T 2woz_A          169 DDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSS  246 (318)
T ss_dssp             SSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBS
T ss_pred             CCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccc
Confidence                  3589999887643221  1111111122222  56777777643     3577899876542  2222111111


Q ss_pred             EEEEEEEeCCCEEEEEeCC--------------CcEEEEECCCCeEEE
Q 004214          467 VLRASFLTRGAQIVSCGAD--------------GLVKLWTVRTGECIA  500 (768)
Q Consensus       467 v~~~~~s~~~~~l~s~~~d--------------g~i~iwd~~~~~~~~  500 (768)
                      .  .+...+++.++.|+.+              ..+.+||+.+.+-..
T Consensus       247 ~--~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  292 (318)
T 2woz_A          247 I--SLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG  292 (318)
T ss_dssp             C--EEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred             e--EEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence            1  1223356677777653              357788887765443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.34  E-value=0.96  Score=44.92  Aligned_cols=239  Identities=12%  Similarity=0.090  Sum_probs=126.5

Q ss_pred             ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe--e----ecccCcEEEEEEecC---CCcEEEEEe--CCC
Q 004214          282 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV--G----TGHMGAVGAVAFSKK---LQNFLVSGS--SDH  350 (768)
Q Consensus       282 ~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~----~~~~~~v~~~~~~~~---~~~~l~s~~--~dg  350 (768)
                      -.....++  +.+++. ++++-...|.|++++..++.....  +    .........++++|+   +..+.++-+  .++
T Consensus        31 L~~P~~ia--~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~  107 (347)
T 3das_A           31 LNSPWGLA--PLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDN  107 (347)
T ss_dssp             CSSEEEEE--ECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred             CCCceEEE--EcCCCc-EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence            34455665  666665 355544489999998765543221  1    123456789999985   233333322  345


Q ss_pred             eEEEEeCCCCCCCCccccccceee--EeeccCCCeEEEEEccCCCEEEEEeC-------------CCcEEEEeCCCC---
Q 004214          351 TIKVWSFDGLSDDAEQPMNLKAKA--VVAAHGKDINSLAVAPNDSLVCTGSQ-------------DRTACVWRLPDL---  412 (768)
Q Consensus       351 ~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~-------------dg~i~i~d~~~~---  412 (768)
                      .|.-|.+.................  ...........|+|.|+|.+.++.+.             .|.|.-++....   
T Consensus       108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~  187 (347)
T 3das_A          108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP  187 (347)
T ss_dssp             EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT
T ss_pred             EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccC
Confidence            566566654211000000111111  11112223467999999987777542             345555554422   


Q ss_pred             -----ceEEEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCc------------------eeEEeecCCCcEE
Q 004214          413 -----VSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGS------------------CLKTFEGHTSSVL  468 (768)
Q Consensus       413 -----~~~~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~------------------~~~~~~~~~~~v~  468 (768)
                           .....-.+|. ....++|+|+|.+.++=. .|+.=.|--+..|.                  ++..+..+.....
T Consensus       188 ~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~  266 (347)
T 3das_A          188 GNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPS  266 (347)
T ss_dssp             TCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEE
T ss_pred             CCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCc
Confidence                 1111122443 456899999887666532 22222222222221                  2333333334667


Q ss_pred             EEEEEeCCCEEEEEeCCCcEEEEECCCCeE----EEEeccCCCcEEEEEEcCCCCEEEEEe
Q 004214          469 RASFLTRGAQIVSCGADGLVKLWTVRTGEC----IATYDKHEDKIWALAVGKKTEMFATGG  525 (768)
Q Consensus       469 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l~~s~~~~~l~s~~  525 (768)
                      .++|. +|..++..-..+.|....+..+..    ...+.+...++..++..|||.++++..
T Consensus       267 G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          267 GIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             ceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            78876 455555555556666666654432    233444457899999999998777654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.27  E-value=0.058  Score=48.92  Aligned_cols=145  Identities=11%  Similarity=0.025  Sum_probs=87.0

Q ss_pred             CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCce------EEEEe--ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 004214          381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS------VVTFR--GHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS  452 (768)
Q Consensus       381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~--~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~  452 (768)
                      ..+..++|+|+|.+.++  .+|.++-.+..+...      -..+-  +-. ...++.|.|+|.+.++  .||.|+-++-.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            46789999999987777  677777777654211      11111  111 2478999999998887  55999888753


Q ss_pred             CCcee------EEe-ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe------EEEEec-cCCCcEEEEEEcCCC
Q 004214          453 DGSCL------KTF-EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE------CIATYD-KHEDKIWALAVGKKT  518 (768)
Q Consensus       453 ~~~~~------~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~-~~~~~v~~l~~s~~~  518 (768)
                      +...-      ..+ .+--..+..+.|.|+|.+-+..  ||.++-+...++.      ....+- ..-..-.-+.|.+++
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G  193 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG  193 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence            32111      111 1122467889999999877766  7776544333221      011111 122234457799999


Q ss_pred             CEEEEEeCCCcEEEEEcC
Q 004214          519 EMFATGGSDALVNLWHDS  536 (768)
Q Consensus       519 ~~l~s~~~dg~v~vw~~~  536 (768)
                      ...++.  +|  ++|...
T Consensus       194 ~l~~v~--~g--~~Y~~~  207 (236)
T 1tl2_A          194 TLFGVQ--GG--KFYEDY  207 (236)
T ss_dssp             CEEEEE--TT--EEEEES
T ss_pred             cEEEEe--CC--eEEecC
Confidence            887776  77  555543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.83  E-value=1.6  Score=45.59  Aligned_cols=71  Identities=8%  Similarity=0.063  Sum_probs=52.4

Q ss_pred             CcEEEEEEEeCCCEEEEEeC-CCcEEEEECCCC------e-------EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 004214          465 SSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTG------E-------CIATYDKHEDKIWALAVGKKTEMFATGGSDALV  530 (768)
Q Consensus       465 ~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~------~-------~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v  530 (768)
                      .....+.++|||++++.++. +.++.++|+...      +       .+.... -.-.....+|.++|....|.--|..|
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqv  401 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQV  401 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceE
Confidence            34456788999999987776 779999998742      1       122333 34456788999999766777799999


Q ss_pred             EEEEcC
Q 004214          531 NLWHDS  536 (768)
Q Consensus       531 ~vw~~~  536 (768)
                      .-|++.
T Consensus       402 vkWni~  407 (638)
T 3sbq_A          402 VKWNME  407 (638)
T ss_dssp             EEEEHH
T ss_pred             EEEecc
Confidence            999874

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.64  E-value=0.19  Score=50.80  Aligned_cols=134  Identities=8%  Similarity=-0.064  Sum_probs=61.1

Q ss_pred             CcEEEEeCCCCceE--EEEeccCCCeEEEEEccCCCEEEEeeC------CCcEEEEeC--CCCc--eeEEeecCCCcEEE
Q 004214          402 RTACVWRLPDLVSV--VTFRGHKRGIWSVEFSPVDQVVITASG------DKTIKIWSI--SDGS--CLKTFEGHTSSVLR  469 (768)
Q Consensus       402 g~i~i~d~~~~~~~--~~~~~~~~~v~~v~~s~~~~~l~t~~~------d~~i~iwd~--~~~~--~~~~~~~~~~~v~~  469 (768)
                      ..+.+||+.+.+-.  ..+......-.+++.. ++++++.|+.      ...+.+||+  .+.+  .+..+.........
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            46889998776432  2222111111223322 4667777653      245777876  3322  22122111111111


Q ss_pred             EEEEeCCCEEEEEeCC----------------------CcEEEEECCCCeE--EEEeccCCCcEEEEEEcCCCCEEEEEe
Q 004214          470 ASFLTRGAQIVSCGAD----------------------GLVKLWTVRTGEC--IATYDKHEDKIWALAVGKKTEMFATGG  525 (768)
Q Consensus       470 ~~~s~~~~~l~s~~~d----------------------g~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~~~~~l~s~~  525 (768)
                      .+...+++.++.|+.+                      ..+.+||+.+.+-  +..+......-.+  +..+++.++.||
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG  324 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGG  324 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEE
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEee
Confidence            2333466677777632                      2577899887643  3333221111122  234678888888


Q ss_pred             CCC------cEEEEEcCCH
Q 004214          526 SDA------LVNLWHDSTA  538 (768)
Q Consensus       526 ~dg------~v~vw~~~~~  538 (768)
                      .++      .|.++++.++
T Consensus       325 ~~~~~~~~~~v~~l~~~~~  343 (357)
T 2uvk_A          325 ETAGGKAVTDSVLITVKDN  343 (357)
T ss_dssp             ECGGGCEEEEEEEEEC-CC
T ss_pred             eCCCCCEeeeEEEEEEcCc
Confidence            653      2444466554

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.53  E-value=1.6  Score=42.02  Aligned_cols=223  Identities=11%  Similarity=-0.000  Sum_probs=113.2

Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214          241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV  320 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  320 (768)
                      .|..++.-   ..+.+.-+ +|.++.|-....-.+.........|..++    ......++. . ||.|+.|-....-.+
T Consensus        25 ~i~~ia~G---~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia----~G~~hs~~l-~-~G~v~~wG~n~~Gql   94 (282)
T 3qhy_B           25 GVDAIAGG---YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIA----AGNYHSLAL-K-DGEVIAWGGNEDGQT   94 (282)
T ss_dssp             SCCEEEEC---SSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEE----ECSSEEEEE-E-TTEEEEEECCTTSTT
T ss_pred             CCcEEEeC---CCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEE----eCCCEEEEE-E-CCEEEEeeCCCCCCC
Confidence            45555542   22333335 89999998665332221111223455553    122333444 5 899999976542222


Q ss_pred             EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC
Q 004214          321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ  400 (768)
Q Consensus       321 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  400 (768)
                      .....-...|..++....   ..+.-. +|.|..|-.........          .......|..++...+.. ++ -. 
T Consensus        95 g~P~~~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n~~gqlg~----------~~~~~~~i~~i~~G~~~~-~~-l~-  157 (282)
T 3qhy_B           95 TVPAEARSGVDAIAAGAW---ASYALK-DGKVIAWGDDSDGQTTV----------PAEAQSGVTALDGGVYTA-LA-VK-  157 (282)
T ss_dssp             CCCGGGSSSEEEEEEETT---EEEEEE-TTEEEEEECCTTSTTSC----------CGGGGSSEEEEEECSSEE-EE-EE-
T ss_pred             CCCcccCCCeEEEECcCC---EEEEEe-CCeEEEecCCCCCcCCC----------CccCCCCeEEEEcccCEE-EE-EE-
Confidence            221222346778877655   344455 99999997654322111          011224566666544332 22 23 


Q ss_pred             CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEE
Q 004214          401 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV  480 (768)
Q Consensus       401 dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  480 (768)
                      ||.|+.|-......+..-..-...|..++...... ++.  .||.|..|-....-.+..-......|..++..... .++
T Consensus       158 ~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~a  233 (282)
T 3qhy_B          158 NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLA  233 (282)
T ss_dssp             TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEE
T ss_pred             CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEE
Confidence            78888887653222111111234577776654333 333  48999999865432221111112345555543332 333


Q ss_pred             EEeCCCcEEEEECCCC
Q 004214          481 SCGADGLVKLWTVRTG  496 (768)
Q Consensus       481 s~~~dg~i~iwd~~~~  496 (768)
                      ..  ||.|+.|-....
T Consensus       234 l~--~g~v~~wG~n~~  247 (282)
T 3qhy_B          234 LK--NGKVIAWGSSRT  247 (282)
T ss_dssp             EE--TTEEEEESTTCC
T ss_pred             EE--CCEEEEecCCCC
Confidence            33  899999976543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.51  E-value=0.38  Score=48.52  Aligned_cols=110  Identities=9%  Similarity=0.022  Sum_probs=53.1

Q ss_pred             CCCEEEEEeC------CCcEEEEeC--CCCce--EEEEeccCCCeEEEEEccCCCEEEEeeCC-----------------
Q 004214          391 NDSLVCTGSQ------DRTACVWRL--PDLVS--VVTFRGHKRGIWSVEFSPVDQVVITASGD-----------------  443 (768)
Q Consensus       391 ~~~~l~~~~~------dg~i~i~d~--~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~t~~~d-----------------  443 (768)
                      ++++++.|+.      ...+..||+  .+.+-  +..+........+.+...++++++.|+.+                 
T Consensus       200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~  279 (357)
T 2uvk_A          200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE  279 (357)
T ss_dssp             TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTT
T ss_pred             CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccc
Confidence            5677777664      235777876  33221  11111111111111223356777777632                 


Q ss_pred             -----CcEEEEeCCCCc--eeEEeecCCCcEEEEEEEeCCCEEEEEeCCC------cEEEEECCCCeEEEEe
Q 004214          444 -----KTIKIWSISDGS--CLKTFEGHTSSVLRASFLTRGAQIVSCGADG------LVKLWTVRTGECIATY  502 (768)
Q Consensus       444 -----~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~  502 (768)
                           ..+.+||+.+.+  .+..+......-  .+...+++.++.|+.++      .|.++++++++.+...
T Consensus       280 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~--~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          280 GLKKSYSTDIHLWHNGKWDKSGELSQGRAYG--VSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             TCCCEECCEEEECC---CEEEEECSSCCBSS--EEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             cccceeeEEEEecCCCceeeCCCCCCCcccc--eeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence                 257789987653  333333222221  22335777788888653      3555688777765543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.46  E-value=0.91  Score=47.37  Aligned_cols=104  Identities=10%  Similarity=0.088  Sum_probs=62.7

Q ss_pred             CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEE--EEec------cCCCeEEEEEccC---CCEEEEeeC-------
Q 004214          381 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV--TFRG------HKRGIWSVEFSPV---DQVVITASG-------  442 (768)
Q Consensus       381 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~------~~~~v~~v~~s~~---~~~l~t~~~-------  442 (768)
                      ....+|+|.|+|+++++-...+.|++++..++....  .+..      .......|+|+|+   +..|+.+..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            456899999999977765444578888866554322  2221      2356779999995   444544432       


Q ss_pred             ------CCcEEEEeCCCC--c-----eeE-Eee-cCCCcEEEEEEEeCCCEEEEEeC
Q 004214          443 ------DKTIKIWSISDG--S-----CLK-TFE-GHTSSVLRASFLTRGAQIVSCGA  484 (768)
Q Consensus       443 ------d~~i~iwd~~~~--~-----~~~-~~~-~~~~~v~~~~~s~~~~~l~s~~~  484 (768)
                            ...|.-|++..+  .     .+. .+. ........++|.|||.+.++.+.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                  235666665332  1     111 122 12235788999999987776553

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.24  E-value=0.82  Score=44.16  Aligned_cols=206  Identities=14%  Similarity=0.113  Sum_probs=106.2

Q ss_pred             CCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEE
Q 004214          306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS  385 (768)
Q Consensus       306 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  385 (768)
                      ||.|+.|-....-.+.........|..++....  +.++. . ||.|..|-......... +         ..-...|..
T Consensus        41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg~-P---------~~~~~~v~~  106 (282)
T 3qhy_B           41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTTV-P---------AEARSGVDA  106 (282)
T ss_dssp             TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTCC-C---------GGGSSSEEE
T ss_pred             CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCCC-C---------cccCCCeEE
Confidence            899999976542222222222345677776554  22333 4 99999997654322111 0         011245777


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC
Q 004214          386 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS  465 (768)
Q Consensus       386 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~  465 (768)
                      ++...+.  .+.-+ ||.|+.|-....-.+..-......|..++......+++  . ||.|..|-....-.+..-..-..
T Consensus       107 ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~gqlg~p~~~~~  180 (282)
T 3qhy_B          107 IAAGAWA--SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV--K-NGGVIAWGDNYFGQTTVPAEAQS  180 (282)
T ss_dssp             EEEETTE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE--E-TTEEEEEECCTTSTTSCCGGGGS
T ss_pred             EECcCCE--EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE--E-CCEEEEecCCCCCCCCCceecCC
Confidence            7665443  33334 89999997654222111111234577776654333332  3 69999998654322211111134


Q ss_pred             cEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          466 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       466 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      .|..++...+. .++.  .||.|+.|-....-.+..-......|..++...... ++. . ||.|..|-.+.
T Consensus       181 ~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~-~al-~-~g~v~~wG~n~  246 (282)
T 3qhy_B          181 GVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYS-LAL-K-NGKVIAWGSSR  246 (282)
T ss_dssp             SEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCE-EEE-E-TTEEEEESTTC
T ss_pred             CeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEE-EEE-E-CCEEEEecCCC
Confidence            56666543332 2333  589999997543211111111223466666554333 333 3 89999997654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.95  E-value=3.4  Score=41.35  Aligned_cols=61  Identities=11%  Similarity=0.126  Sum_probs=42.0

Q ss_pred             CCCeEEEEEcc-------CCCEEEEEeCCCcEEEEeCCCCceEEE--E-eccCCCeEEEEEccCCCEEEEe
Q 004214          380 GKDINSLAVAP-------NDSLVCTGSQDRTACVWRLPDLVSVVT--F-RGHKRGIWSVEFSPVDQVVITA  440 (768)
Q Consensus       380 ~~~i~~~~~s~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~--~-~~~~~~v~~v~~s~~~~~l~t~  440 (768)
                      ...+..++|..       +|.++++....+.|...++..++....  + ......+..+++.|+|.+.++.
T Consensus       270 ~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          270 SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred             CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence            34677888864       577777777778888888876544332  2 1233578999999999876654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.82  E-value=1.1  Score=49.87  Aligned_cols=219  Identities=10%  Similarity=0.097  Sum_probs=108.4

Q ss_pred             CEEEEEEeCC----CeEEEEeCCCceEEEee-e-----cccC-cEEEEEEec-CCCcEEEEEeCC------CeEEEEeCC
Q 004214          297 KILIVTGSKD----NSVRLWDSESRCCVGVG-T-----GHMG-AVGAVAFSK-KLQNFLVSGSSD------HTIKVWSFD  358 (768)
Q Consensus       297 ~~~l~~~~~d----g~i~iwd~~~~~~~~~~-~-----~~~~-~v~~~~~~~-~~~~~l~s~~~d------g~i~iwd~~  358 (768)
                      +.+++.|+.+    ..+.+||..+++..... .     .... .-.+++..+ + ..+++.|+.+      ..+.+||..
T Consensus       398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~-~~lyv~GG~~~~~~~~~dv~~yd~~  476 (695)
T 2zwa_A          398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN-NQLLLIGGRKAPHQGLSDNWIFDMK  476 (695)
T ss_dssp             SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT-TEEEEECCBSSTTCBCCCCEEEETT
T ss_pred             CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC-CEEEEEcCCCCCCCccccEEEEeCC
Confidence            3346666643    46888888877554433 1     1111 112333332 4 3367777654      246777776


Q ss_pred             CCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceEEEE-----eccCCCeEEEEEc
Q 004214          359 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR--TACVWRLPDLVSVVTF-----RGHKRGIWSVEFS  431 (768)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~-----~~~~~~v~~v~~s  431 (768)
                      ...        ........ ....-.+++.-.++++++.|+.++  .+.+||..+..-...-     ........++.+.
T Consensus       477 t~~--------W~~~~~~p-~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~  547 (695)
T 2zwa_A          477 TRE--------WSMIKSLS-HTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD  547 (695)
T ss_dssp             TTE--------EEECCCCS-BCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred             CCc--------EEECCCCC-CCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence            431        11110000 011112233324788888888655  6899998876422211     1111222345556


Q ss_pred             cC-CCEEEEeeC--C-----CcEEEEeCCCCce-----eEEeec---CCCcEEEEEEEeCCCEEEEEeCC--------Cc
Q 004214          432 PV-DQVVITASG--D-----KTIKIWSISDGSC-----LKTFEG---HTSSVLRASFLTRGAQIVSCGAD--------GL  487 (768)
Q Consensus       432 ~~-~~~l~t~~~--d-----~~i~iwd~~~~~~-----~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d--------g~  487 (768)
                      .+ +.+++.|+.  +     ..+.+||+.+..-     -..+..   ....-.+++...+++.++.||.+        ..
T Consensus       548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  627 (695)
T 2zwa_A          548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNS  627 (695)
T ss_dssp             TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTS
T ss_pred             CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCe
Confidence            55 667777765  2     4588999887761     112211   11111123333447777777743        45


Q ss_pred             EEEEECCCCeEEEEeccCCC------c--E-EEEEEcCCCCEEEEEeC
Q 004214          488 VKLWTVRTGECIATYDKHED------K--I-WALAVGKKTEMFATGGS  526 (768)
Q Consensus       488 i~iwd~~~~~~~~~~~~~~~------~--v-~~l~~s~~~~~l~s~~~  526 (768)
                      +.+||+.+.+.. .......      +  + .+....++++.++.||.
T Consensus       628 v~~yd~~t~~W~-~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg  674 (695)
T 2zwa_A          628 IISLDPLSETLT-SIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG  674 (695)
T ss_dssp             EEEEETTTTEEE-ECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred             EEEEECCCCeEE-EeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence            899999887654 2211100      0  0 22334456678777774

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.72  E-value=2.8  Score=41.39  Aligned_cols=121  Identities=9%  Similarity=0.055  Sum_probs=71.3

Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEecCc-cceeEEEEE--cCCCCEEEEE--eCCCeEEEEECCCCeeeeeeecceeEee
Q 004214           46 LLFSGSDDATVRVWDLLAKKCVATLDKH-FSRVTSMAI--TSDGSTLISA--GRDKVVNLWDLRDYSCKLTVPTYEMVEA  120 (768)
Q Consensus        46 ~l~sg~~dg~I~iWd~~~~~~~~~l~~h-~~~V~~l~f--s~d~~~L~s~--~~dg~i~vWd~~~~~~~~~~~~~~~v~~  120 (768)
                      +++.++.||.|.-.|..+|+.+.+++.. ..++....-  .+.+..++.+  ..||.|..++..+|.....+.....+..
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~   91 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST   91 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence            4889999999999999999999988754 122222110  0112234433  5899999999998865544433322110


Q ss_pred             --EEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCC
Q 004214          121 --VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS  178 (768)
Q Consensus       121 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~  178 (768)
                        +..  .+.....          ..-.......+++++.+|.+...|+.+|........
T Consensus        92 SP~~~--~~~pvv~----------~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           92 SPLHL--KTNIVVN----------DSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             CSEEE--ECC--------------------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ccccc--CCCceee----------cccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence              110  0000000          000000234789999999999999999966655443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.71  E-value=0.4  Score=43.49  Aligned_cols=131  Identities=11%  Similarity=-0.055  Sum_probs=77.5

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCc------eEEEEecc--CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCcee------
Q 004214          392 DSLVCTGSQDRTACVWRLPDLV------SVVTFRGH--KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL------  457 (768)
Q Consensus       392 ~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~--~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~------  457 (768)
                      ..+|.+...| +++.=..++..      ....+ +.  =..+..++|+|+|.+.++  .+|.++-.+..+....      
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence            3455666666 65555554443      12222 22  247789999999987766  5677777776542211      


Q ss_pred             EEee--cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEE-------EEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214          458 KTFE--GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI-------ATYDKHEDKIWALAVGKKTEMFATGGSDA  528 (768)
Q Consensus       458 ~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~~~v~~l~~s~~~~~l~s~~~dg  528 (768)
                      ..+-  +-. .-..+.|.|+|.+.++  .||.|+-++..+...-       ..-..-=..+..|.+.|+|...++.  ||
T Consensus        80 t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg  154 (236)
T 1tl2_A           80 KKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQ  154 (236)
T ss_dssp             EEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TT
T ss_pred             cEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CC
Confidence            1110  111 1356888999987777  5698887776432111       1111112467899999999888777  77


Q ss_pred             cEE
Q 004214          529 LVN  531 (768)
Q Consensus       529 ~v~  531 (768)
                      .+.
T Consensus       155 ~ly  157 (236)
T 1tl2_A          155 QFY  157 (236)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            644

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.26  E-value=4.9  Score=40.16  Aligned_cols=235  Identities=11%  Similarity=0.047  Sum_probs=121.7

Q ss_pred             CceeEEEEecCCCCEEEEEeCCCcEEEEECCCce-eeeeee---CCccceEEEeeeeecC---CCEEEEEEeC---C---
Q 004214          240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS-CSYVLA---GHSEIVLCLDTCALSS---GKILIVTGSK---D---  306 (768)
Q Consensus       240 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~---~~~~~v~~l~~~~~~~---~~~~l~~~~~---d---  306 (768)
                      .....++|.+ ++. +.++...|.|++++. .+. .+..+.   ........++  +.++   ++.+.++-+.   +   
T Consensus        29 ~~P~~ia~~p-dG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia--~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           29 EVPWSIAPLG-GGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLA--LHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             SCEEEEEEEE-TTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEE--ECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCeEEEEcC-CCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEE--eCCCCCcCCEEEEEEeccCCCCCc
Confidence            3567888876 444 666666799999973 444 111111   1224466675  5565   4554444432   3   


Q ss_pred             -CeEEEEeCCCc-------eEE-Eeee-cccCcEEEEEEecCCCcEEEEEeC-------------CCeEEEEeCCCCCCC
Q 004214          307 -NSVRLWDSESR-------CCV-GVGT-GHMGAVGAVAFSKKLQNFLVSGSS-------------DHTIKVWSFDGLSDD  363 (768)
Q Consensus       307 -g~i~iwd~~~~-------~~~-~~~~-~~~~~v~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~~~~  363 (768)
                       +.|..|+....       +.+ ..+. ........++|.|+|. ++++.+.             .|.|.-++.+..- .
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~-p  181 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRP-P  181 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC-C
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCC-C
Confidence             56777776543       111 1122 1112245789999986 4444332             2445555543210 0


Q ss_pred             CccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCC---cEEEEeCCC----------------CceEEEEeccCC
Q 004214          364 AEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDR---TACVWRLPD----------------LVSVVTFRGHKR  423 (768)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg---~i~i~d~~~----------------~~~~~~~~~~~~  423 (768)
                      ...+.. .......++ .....++|+| ++.++++-....   .|.+.....                ..++..+.....
T Consensus       182 ~~npf~-~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~  259 (354)
T 3a9g_A          182 ADNPFP-NSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETW  259 (354)
T ss_dssp             TTSSST-TCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCC
T ss_pred             CCCCCC-CCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCc
Confidence            001110 111222233 3456899999 666555533222   233322110                012222211234


Q ss_pred             CeEEEEEc-------cCCCEEEEeeCCCcEEEEeCCCC-cee--EEee-cCCCcEEEEEEEeCCCEEEEEe
Q 004214          424 GIWSVEFS-------PVDQVVITASGDKTIKIWSISDG-SCL--KTFE-GHTSSVLRASFLTRGAQIVSCG  483 (768)
Q Consensus       424 ~v~~v~~s-------~~~~~l~t~~~d~~i~iwd~~~~-~~~--~~~~-~~~~~v~~~~~s~~~~~l~s~~  483 (768)
                      ....++|.       .+|.++++....+.|...++... ...  ..+. +....+..+++.|||.+.++..
T Consensus       260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            56778883       56777777777788888888753 322  2332 2345788999999997666554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.14  E-value=2.5  Score=46.92  Aligned_cols=197  Identities=9%  Similarity=0.094  Sum_probs=98.3

Q ss_pred             CCCEEEEEeC----CCcEEEEECCCceeeeee-e-------CCccceEEEeeeeecCCCEEEEEEeCC------CeEEEE
Q 004214          251 EEQYLAVATN----IEQVQVYDLSSMSCSYVL-A-------GHSEIVLCLDTCALSSGKILIVTGSKD------NSVRLW  312 (768)
Q Consensus       251 ~~~~l~~~~~----~~~i~i~d~~~~~~~~~~-~-------~~~~~v~~l~~~~~~~~~~~l~~~~~d------g~i~iw  312 (768)
                      ++.+++.|+.    ...+.+||..+..-...- .       ..... .++.  ....++.+++.|+.+      ..+.+|
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~--~~~~~~~lyv~GG~~~~~~~~~dv~~y  473 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFT--TISRNNQLLLIGGRKAPHQGLSDNWIF  473 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEE--EETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEE--EEccCCEEEEEcCCCCCCCccccEEEE
Confidence            4556666664    246888998776543322 1       11111 1111  333134456666643      357889


Q ss_pred             eCCCceEEEeeecccCcE-EEEEEecCCCcEEEEEeCCC--eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214          313 DSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA  389 (768)
Q Consensus       313 d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  389 (768)
                      |..+.+....-....... .+++...+ ..+++.|+.++  .+.+||.....-....+.. .    .........++.+.
T Consensus       474 d~~t~~W~~~~~~p~~R~~h~~~~~~~-~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g-~----~p~~r~~~~a~v~~  547 (695)
T 2zwa_A          474 DMKTREWSMIKSLSHTRFRHSACSLPD-GNVLILGGVTEGPAMLLYNVTEEIFKDVTPKD-E----FFQNSLVSAGLEFD  547 (695)
T ss_dssp             ETTTTEEEECCCCSBCCBSCEEEECTT-SCEEEECCBCSSCSEEEEETTTTEEEECCCSS-G----GGGSCCBSCEEEEE
T ss_pred             eCCCCcEEECCCCCCCcccceEEEEcC-CEEEEECCCCCCCCEEEEECCCCceEEccCCC-C----CCCcccceeEEEEe
Confidence            998876544322111111 12222234 34777777654  6888887753110000000 0    00011122335555


Q ss_pred             cC-CCEEEEEeC--C-----CcEEEEeCCCCce-----EEEEec---cCCCeEEEEEccCCCEEEEeeC--------CCc
Q 004214          390 PN-DSLVCTGSQ--D-----RTACVWRLPDLVS-----VVTFRG---HKRGIWSVEFSPVDQVVITASG--------DKT  445 (768)
Q Consensus       390 ~~-~~~l~~~~~--d-----g~i~i~d~~~~~~-----~~~~~~---~~~~v~~v~~s~~~~~l~t~~~--------d~~  445 (768)
                      .+ +++++.|+.  +     ..+.+||+.+..-     -..+..   ....-.+++...++++++.|+.        ...
T Consensus       548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  627 (695)
T 2zwa_A          548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNS  627 (695)
T ss_dssp             TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTS
T ss_pred             CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCe
Confidence            55 777888775  2     3588999887661     112211   1111123333444777777774        346


Q ss_pred             EEEEeCCCCce
Q 004214          446 IKIWSISDGSC  456 (768)
Q Consensus       446 i~iwd~~~~~~  456 (768)
                      |.+||+.+.+-
T Consensus       628 v~~yd~~t~~W  638 (695)
T 2zwa_A          628 IISLDPLSETL  638 (695)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEECCCCeE
Confidence            89999887643

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=92.40  E-value=8.9  Score=37.61  Aligned_cols=251  Identities=12%  Similarity=0.040  Sum_probs=135.8

Q ss_pred             ceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCccccee-
Q 004214          150 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKME-  228 (768)
Q Consensus       150 ~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-  228 (768)
                      +..+++.+.+|.|+--.+.+-.........  .........+.+..+......+.+++.+..|.++.......|..... 
T Consensus         3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g--~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~   80 (327)
T 3uc1_A            3 EDVVVTITETGYAKRTKTDLYRSQKRGGKG--VQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTA   80 (327)
T ss_dssp             CEEEEEEETTSEEEEEEHHHHHHHC----------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSS
T ss_pred             ccEEEEEeCCCEEEEeeHHHhhhcccCCCC--ccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccC
Confidence            347888899999886654322111000000  00001112244556666678888999999999988776655532111 


Q ss_pred             --eEEEeee-cccCCceeEEEEecC--CCCEEEEEeCCCcEEEEECCCcee-------eeeeeCCccceEEEeeeeecCC
Q 004214          229 --LILSKRL-VGYNEEILDLKFLGE--EEQYLAVATNIEQVQVYDLSSMSC-------SYVLAGHSEIVLCLDTCALSSG  296 (768)
Q Consensus       229 --~~~~~~~-~~~~~~i~~~~~~~~--~~~~l~~~~~~~~i~i~d~~~~~~-------~~~~~~~~~~v~~l~~~~~~~~  296 (768)
                        .+....+ ......|..+....+  ++..+++++..|.++-..+.....       ...+... +.+..+.  .....
T Consensus        81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~--~~~~~  157 (327)
T 3uc1_A           81 RGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAV--LCSAG  157 (327)
T ss_dssp             CCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEE--EECTT
T ss_pred             CCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEEE--EecCC
Confidence              1110011 123456777666543  578999999999999988654322       1123333 3333332  23344


Q ss_pred             CEEEEEEeCCCeEEEEeCC--Cce---------EEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCc
Q 004214          297 KILIVTGSKDNSVRLWDSE--SRC---------CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE  365 (768)
Q Consensus       297 ~~~l~~~~~dg~i~iwd~~--~~~---------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  365 (768)
                      .. ++..+..|.+..+...  .-.         ..-.+. ....|.++...+.+. .++..+..|.++.-.+........
T Consensus       158 d~-ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~-~ll~~T~~G~~Krt~l~e~~~~~R  234 (327)
T 3uc1_A          158 DD-LLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGT-YLLVATSGGYAKRTAIEEYPVQGR  234 (327)
T ss_dssp             CE-EEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTC-EEEEEETTSEEEEEEGGGSCBCCT
T ss_pred             CE-EEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCC-EEEEEeCCCcEEEEEHHHccccCc
Confidence            44 7778889998888776  211         111121 234566665555433 688999999999887764322110


Q ss_pred             cccccceeeE--eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 004214          366 QPMNLKAKAV--VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD  411 (768)
Q Consensus       366 ~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~  411 (768)
                      .   ......  +......+..+....+...++..+.+|.+..++...
T Consensus       235 ~---~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~  279 (327)
T 3uc1_A          235 G---GKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ  279 (327)
T ss_dssp             T---SCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred             C---CCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence            0   001111  111123344444444455666677788877776543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=92.26  E-value=12  Score=38.80  Aligned_cols=110  Identities=14%  Similarity=0.138  Sum_probs=56.9

Q ss_pred             ceEEEeeeeecCCCEEEEEEeCC-CeEEEEeCCCceEEE--eeec------ccCcEEEEEEecC---CCcEEEEEeC---
Q 004214          284 IVLCLDTCALSSGKILIVTGSKD-NSVRLWDSESRCCVG--VGTG------HMGAVGAVAFSKK---LQNFLVSGSS---  348 (768)
Q Consensus       284 ~v~~l~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~--~~~~------~~~~v~~~~~~~~---~~~~l~s~~~---  348 (768)
                      ....++  +.+++.. +++ ... +.|++++..++....  .+..      ..+....++++|+   +..+.++-+.   
T Consensus        28 ~P~~~a--~~pdG~l-~V~-e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~  103 (454)
T 1cru_A           28 KPHALL--WGPDNQI-WLT-ERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP  103 (454)
T ss_dssp             SEEEEE--ECTTSCE-EEE-ETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred             CceEEE--EcCCCcE-EEE-EcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence            345665  6676653 444 455 479888865554322  2211      2456779999995   4544444432   


Q ss_pred             ---------CCeEEEEeCCCCCCCCccccccceee--EeeccCCCeEEEEEccCCCEEEEEeC
Q 004214          349 ---------DHTIKVWSFDGLSDDAEQPMNLKAKA--VVAAHGKDINSLAVAPNDSLVCTGSQ  400 (768)
Q Consensus       349 ---------dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~  400 (768)
                               ...|.-|++........   ......  ...........|+|.|+|.+.++.+.
T Consensus       104 ~~~~~~~~~~~~v~r~~~~~~~~~~~---~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          104 KSTDKELPNQTIIRRYTYNKSTDTLE---KPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEEE---EEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCCccccccccEEEEEEECCCCCCcC---CcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                     23455555432211000   001111  11112234789999999988777553

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=91.48  E-value=19  Score=41.43  Aligned_cols=38  Identities=29%  Similarity=0.427  Sum_probs=33.5

Q ss_pred             CeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee
Q 004214          424 GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE  461 (768)
Q Consensus       424 ~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~  461 (768)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46778888888999999999999999999999988754

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=90.80  E-value=12  Score=36.14  Aligned_cols=209  Identities=7%  Similarity=0.050  Sum_probs=110.8

Q ss_pred             CCCEEEEEe--CCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCC-------------CeEEEEeCC
Q 004214          251 EEQYLAVAT--NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD-------------NSVRLWDSE  315 (768)
Q Consensus       251 ~~~~l~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~  315 (768)
                      ++..+....  .++.|+..+....... .+...  .+..    +.+.++.+..+...+             ..|+..++.
T Consensus        24 ~g~~iy~~n~~d~~~ly~~~~dg~~~~-~l~~~--~~~~----i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d   96 (302)
T 3s25_A           24 SDGEVFFSNTNDNGRLYAMNIDGSNIH-KLSND--TAMY----INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN   96 (302)
T ss_dssp             ETTEEEEEEGGGTTEEEEEETTSCSCE-EEEEE--EEEE----EEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred             eCCEEEEEeCCCCceEEEEcCCCCCCE-EccCC--ceee----EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence            344444443  2466666666544433 33221  1222    456777755555543             467777887


Q ss_pred             CceEEEeeecccCcEEEEEEecCCCcEEEEE---eCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214          316 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG---SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND  392 (768)
Q Consensus       316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  392 (768)
                      .+........   .  +..++++++.+..+-   ..+..|...++....           ...+..+.  +  .+++|++
T Consensus        97 g~~~~~l~~~---~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-----------~~~lt~~~--~--~~~~~~g  156 (302)
T 3s25_A           97 GHGSTVLDPD---P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-----------KKKIKNHY--L--FTCNTSD  156 (302)
T ss_dssp             SCCCEEEECS---C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-----------CEEEESSC--C--CCSEEET
T ss_pred             CCcceEeecC---C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-----------eEEEeCCC--c--eEeeEEC
Confidence            6653333221   1  225677766544444   233444444554321           11122221  1  4567888


Q ss_pred             CEEEEEeC-CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCC--CcEEEEeCCCCceeEEeecCCCcEEE
Q 004214          393 SLVCTGSQ-DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD--KTIKIWSISDGSCLKTFEGHTSSVLR  469 (768)
Q Consensus       393 ~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d--~~i~iwd~~~~~~~~~~~~~~~~v~~  469 (768)
                      +.|.-.+. ...|...++..+.....+.+   ... ..++|++.+|+-....  ..|..-++.... ...+..  ..+  
T Consensus       157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--  227 (302)
T 3s25_A          157 RYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--  227 (302)
T ss_dssp             TEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--
T ss_pred             CEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--
Confidence            88886665 56888888876654443332   222 3466888888765543  356666665433 444432  233  


Q ss_pred             EEEEeCCCEEEEEeC--CCcEEEEECCC
Q 004214          470 ASFLTRGAQIVSCGA--DGLVKLWTVRT  495 (768)
Q Consensus       470 ~~~s~~~~~l~s~~~--dg~i~iwd~~~  495 (768)
                      ..|+|++.+|+-+..  .+.|..-++.-
T Consensus       228 ~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          228 EHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence            348889998876533  34566666643

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=87.33  E-value=24  Score=34.83  Aligned_cols=81  Identities=14%  Similarity=0.087  Sum_probs=51.4

Q ss_pred             EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCee--EEEec----CccceeEEEEEcCC---CCEEEEE-
Q 004214           23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC--VATLD----KHFSRVTSMAITSD---GSTLISA-   92 (768)
Q Consensus        23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~--~~~l~----~h~~~V~~l~fs~d---~~~L~s~-   92 (768)
                      +..+-..-.....|+|.|||+.  +++--..|.|++++..+++.  +..+.    ...+....|+|+|+   +.+|... 
T Consensus        24 ~~~va~gL~~P~~ia~~pdG~l--lVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y  101 (347)
T 3das_A           24 LRTVATGLNSPWGLAPLPGGDL--LVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF  101 (347)
T ss_dssp             EEEEECCCSSEEEEEECTTSCE--EEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred             eEEeecCCCCceEEEEcCCCcE--EEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence            4455555667889999999874  55554489999998765543  32221    23456899999995   3444432 


Q ss_pred             e--CCCeEEEEECCC
Q 004214           93 G--RDKVVNLWDLRD  105 (768)
Q Consensus        93 ~--~dg~i~vWd~~~  105 (768)
                      +  .++.|.-|.+..
T Consensus       102 t~~~~~~v~R~~~~~  116 (347)
T 3das_A          102 TSASDNRIVRMLYDE  116 (347)
T ss_dssp             ECSSSEEEEEEEBCT
T ss_pred             ecCCCCEEEEEEeCC
Confidence            2  344555565544

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=86.62  E-value=29  Score=35.01  Aligned_cols=291  Identities=11%  Similarity=0.085  Sum_probs=130.3

Q ss_pred             eEEEEeeCCcEEEEEEcCCc-eeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCccc----
Q 004214          151 IHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK----  225 (768)
Q Consensus       151 ~~~~~~~~~g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~----  225 (768)
                      ..++....+|.|..|-.... ++=............. ..........+.......++.+.+|.++.|-.......    
T Consensus        11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v-~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~   89 (389)
T 3kci_A           11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPC-EALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG   89 (389)
T ss_dssp             ----------CEEEEEECTTSTTSSCSCSEEEEEEEC-HHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSS
T ss_pred             ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEec-ccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC
Confidence            46788888999999966543 2110000000000000 00011122334455666788899999999965432210    


Q ss_pred             ceeeEEEeeecccCC-ceeEEEEecCCCCEEEEEeCCCcEEEEECCCce-----------eeeeeeC-CccceEEEeeee
Q 004214          226 KMELILSKRLVGYNE-EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS-----------CSYVLAG-HSEIVLCLDTCA  292 (768)
Q Consensus       226 ~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-----------~~~~~~~-~~~~v~~l~~~~  292 (768)
                      .........+..... .+..+... ....+.++-+.+|.|+.|-....-           ....+.. ....|..++   
T Consensus        90 ~~~~~~p~~v~~~~~~~~~~v~i~-~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va---  165 (389)
T 3kci_A           90 TESVSTPTLLESIQHVFIKKVAVN-SGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVA---  165 (389)
T ss_dssp             SCCEEEEEECGGGTTSCEEEEEEC-TTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE---
T ss_pred             cCCccCCEEcccccCCceeEEEEC-cCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEE---
Confidence            011111222222222 22223332 355677777888999999654311           1111111 112455543   


Q ss_pred             ecCCCEEEEEEeCCCeEEEEeCCCc------------eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCC
Q 004214          293 LSSGKILIVTGSKDNSVRLWDSESR------------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL  360 (768)
Q Consensus       293 ~~~~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  360 (768)
                       ..... .++-..+|.|+.|-....            .+..........|..++.... ..+.+.-..||.|..|-....
T Consensus       166 -~G~~h-s~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g-~~~t~~l~~~G~v~~wG~n~~  242 (389)
T 3kci_A          166 -AGGAH-SACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSG-DAQTLCLTDDDTVWSWGDGDY  242 (389)
T ss_dssp             -ECSSE-EEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCS-SCEEEEEETTTEEEEEECCGG
T ss_pred             -eCcCe-EEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCC-CcEEEEEccCCEEEEEeCCCC
Confidence             12222 556678999999964321            111111112335666665432 235667788999999975432


Q ss_pred             CCCCcccc--ccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-----------eEEEEec-cCCCeE
Q 004214          361 SDDAEQPM--NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-----------SVVTFRG-HKRGIW  426 (768)
Q Consensus       361 ~~~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~-~~~~v~  426 (768)
                      ........  ...+..........|..++..  ....++-+.+|.|+.|=....-           ....+.. ....|.
T Consensus       243 GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~  320 (389)
T 3kci_A          243 GKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVI  320 (389)
T ss_dssp             GTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEE
T ss_pred             CCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEE
Confidence            11100000  011111111122245555544  3344555788999999653210           1111111 123455


Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEeCCC
Q 004214          427 SVEFSPVDQVVITASGDKTIKIWSISD  453 (768)
Q Consensus       427 ~v~~s~~~~~l~t~~~d~~i~iwd~~~  453 (768)
                      .++..  ....++-..||.|+.|-...
T Consensus       321 ~ia~G--~~h~~al~~~G~v~~wG~n~  345 (389)
T 3kci_A          321 AIATG--SLHCVCCTEDGEVYTWGDND  345 (389)
T ss_dssp             EEEEC--SSEEEEEETTCCEEEEECCT
T ss_pred             EEEec--cCeEEEECCCCCEEEeeCCC
Confidence            55544  33444456788888887653

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=85.66  E-value=32  Score=34.66  Aligned_cols=248  Identities=10%  Similarity=0.079  Sum_probs=121.8

Q ss_pred             EEEEeeCCcEEEEEEcCCceeeeecC-Cceee-cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCccc----
Q 004214          152 HFITVGERGIVRMWNADSACLYEQKS-SDVTI-SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK----  225 (768)
Q Consensus       152 ~~~~~~~~g~i~iwd~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~----  225 (768)
                      +.+....+|.|..|-....-.+.... ..... ..........+....+.......++.+.+|.++.|-.......    
T Consensus        64 ~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~  143 (389)
T 3kci_A           64 TLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGN  143 (389)
T ss_dssp             EEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSS
T ss_pred             eEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCC
Confidence            56677788999999654431110000 00000 0001111123344566677788899999999999965442210    


Q ss_pred             ceeeEEEeeeccc-CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee-----------eeeeeC-CccceEEEeeee
Q 004214          226 KMELILSKRLVGY-NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-----------SYVLAG-HSEIVLCLDTCA  292 (768)
Q Consensus       226 ~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-----------~~~~~~-~~~~v~~l~~~~  292 (768)
                      .........+... ...|..++.   ...+.++-+.+|.|+.|-....-.           ...+.. ....+..++  .
T Consensus       144 ~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia--~  218 (389)
T 3kci_A          144 RSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIA--C  218 (389)
T ss_dssp             CCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE--E
T ss_pred             CccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEE--E
Confidence            0111112222222 225666654   455677777889999997543111           111111 122344443  1


Q ss_pred             ecCCCEEEEEEeCCCeEEEEeCCCc-----------eEEEeeec-ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCC
Q 004214          293 LSSGKILIVTGSKDNSVRLWDSESR-----------CCVGVGTG-HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL  360 (768)
Q Consensus       293 ~~~~~~~l~~~~~dg~i~iwd~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  360 (768)
                      -..... .+.-..+|.|+.|-....           .....+.. ....|..++....   +.++-..+|.|..|-....
T Consensus       219 G~g~~~-t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~---hs~alt~~G~v~~wG~n~~  294 (389)
T 3kci_A          219 GSGDAQ-TLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ---FSVALTKSGAVYTWGKGDY  294 (389)
T ss_dssp             CCSSCE-EEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT---EEEEEETTSCEEEEECCGG
T ss_pred             cCCCcE-EEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC---EEEEEeCCCeEEEEeCCCC
Confidence            111223 555678999999954321           11111111 2224666666543   5566688999999976432


Q ss_pred             CCCCcc--ccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214          361 SDDAEQ--PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP  410 (768)
Q Consensus       361 ~~~~~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  410 (768)
                      ......  .....+..........|..++..  ....++...||.|+.|=..
T Consensus       295 GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~wG~n  344 (389)
T 3kci_A          295 HRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTWGDN  344 (389)
T ss_dssp             GTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEEECC
T ss_pred             CCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEeeCC
Confidence            111000  00111111111122345555543  3344555788889888654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=84.23  E-value=31  Score=33.29  Aligned_cols=185  Identities=8%  Similarity=0.027  Sum_probs=95.0

Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEE---eCCCeEEEEeCCCceEEEeeecccCcEEEEEEecC
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG---SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK  338 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  338 (768)
                      ..|+..++...+....... ..  ..    +.+.++.+..+-   .....|...++....... +..+..    ..++++
T Consensus        88 ~~Iy~i~~dg~~~~~l~~~-~~--~~----~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~-lt~~~~----~~~~~~  155 (302)
T 3s25_A           88 NSLCRIKRNGHGSTVLDPD-PC--IY----ASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK-IKNHYL----FTCNTS  155 (302)
T ss_dssp             EEEEEEETTSCCCEEEECS-CE--EE----EEEETTEEEEEEESSSSCEEEEEEETTSCCCEE-EESSCC----CCSEEE
T ss_pred             CeEEEEeCCCCcceEeecC-Cc--cE----EEEeCCEEEEEeecCCCCceEEEEECCCCCeEE-EeCCCc----eEeeEE
Confidence            4677788877664433222 11  12    345666644444   234566666776443332 332322    456778


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceEE
Q 004214          339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR--TACVWRLPDLVSVV  416 (768)
Q Consensus       339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~  416 (768)
                      ++.+..+......|..-++....          .. .+.  .... ...++|++.+|+-...++  .|..-++..... .
T Consensus       156 g~~iy~t~~g~~~Iy~~~l~g~~----------~~-~l~--~~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~  220 (302)
T 3s25_A          156 DRYFYYNNPKNGQLYRYDTASQS----------EA-LFY--DCNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-V  220 (302)
T ss_dssp             TTEEEEECTTTCCEEEEETTTTE----------EE-EEE--CSCE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCC-E
T ss_pred             CCEEEEEeCCCceEEEEECCCCC----------EE-EEe--CCCc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCe-E
Confidence            77655565546777777776431          11 111  1222 234668888888766543  566666654432 2


Q ss_pred             EEeccCCCeEEEEEccCCCEEEEee--CCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEE
Q 004214          417 TFRGHKRGIWSVEFSPVDQVVITAS--GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSC  482 (768)
Q Consensus       417 ~~~~~~~~v~~v~~s~~~~~l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  482 (768)
                      .+.  ...+  ..|+|++..|+-+.  ..+.|..-++. |...+.+...  .+.  .+++.+.+|+-.
T Consensus       221 ~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D-G~~r~~l~~~--~~~--~i~i~~d~Iy~t  279 (302)
T 3s25_A          221 VLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKND-GTGFKELAKG--EFC--NINVTSQYVYFT  279 (302)
T ss_dssp             ECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETT-SCCCEEEEES--CEE--EEEECSSEEEEE
T ss_pred             EEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECC-CCccEEeeCC--ccc--eEEEeCCEEEEE
Confidence            332  1223  34788888887653  23566666664 4333333321  222  344555555443

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=83.47  E-value=35  Score=33.32  Aligned_cols=232  Identities=9%  Similarity=0.031  Sum_probs=124.3

Q ss_pred             EEEEEeCCCeEEEEeCCCc-------eEEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEEEEe---CCCCCCCCccc
Q 004214          299 LIVTGSKDNSVRLWDSESR-------CCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS---FDGLSDDAEQP  367 (768)
Q Consensus       299 ~l~~~~~dg~i~iwd~~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd---~~~~~~~~~~~  367 (768)
                      ++++.+.+|.|+--.+.+.       .-..... .....+..+....... .++..+..|.+.-..   ++........ 
T Consensus         5 v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d-~ll~fT~~Gr~y~~~~~~lp~~~r~~~G-   82 (327)
T 3uc1_A            5 VVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHD-LILFFTTQGRVYRAKAYDLPEASRTARG-   82 (327)
T ss_dssp             EEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTS-EEEEEETTSEEEEEEGGGSCBCCSSSCC-
T ss_pred             EEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCC-EEEEEeCCCeEEEEEHHHCcCCCccCCC-
Confidence            4777888888886653211       0011111 1233444444433323 566677777765544   3322111000 


Q ss_pred             cccceeeEeeccCCCeEEEEEcc---CCCEEEEEeCCCcEEEEeCCCCc-------eEEEEeccCCCeEEEEEccCCCEE
Q 004214          368 MNLKAKAVVAAHGKDINSLAVAP---NDSLVCTGSQDRTACVWRLPDLV-------SVVTFRGHKRGIWSVEFSPVDQVV  437 (768)
Q Consensus       368 ~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~v~~v~~s~~~~~l  437 (768)
                      ........ ......|.++..-+   +..+++..+.+|.++...+....       ....+.. ...+..+........|
T Consensus        83 ~~i~~~l~-l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~i  160 (327)
T 3uc1_A           83 QHVANLLA-FQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDL  160 (327)
T ss_dssp             EEHHHHTT-CCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEE
T ss_pred             EEHHHccC-CCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEE
Confidence            00000000 11234555554433   57899999999999998865422       1122333 3445555444455667


Q ss_pred             EEeeCCCcEEEEeCC--CC---------ceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe-------EE
Q 004214          438 ITASGDKTIKIWSIS--DG---------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-------CI  499 (768)
Q Consensus       438 ~t~~~d~~i~iwd~~--~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-------~~  499 (768)
                      +..+..|.+..+...  .-         ...-.+. ....|.++...+.+.+|+..+..|.++.-.+....       -+
T Consensus       161 ll~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~  239 (327)
T 3uc1_A          161 LLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGV  239 (327)
T ss_dssp             EEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred             EEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcE
Confidence            777788998888776  21         1111222 34567777766677799999999999888764322       22


Q ss_pred             EEec--cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214          500 ATYD--KHEDKIWALAVGKKTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       500 ~~~~--~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~  535 (768)
                      ..+.  .-.+.+..+....+...++..+.+|.+.-+..
T Consensus       240 ~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~  277 (327)
T 3uc1_A          240 LTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAA  277 (327)
T ss_dssp             ESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEG
T ss_pred             EEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEeh
Confidence            2222  21344555544445556777777887766654

>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=82.74  E-value=3.4  Score=34.50  Aligned_cols=90  Identities=11%  Similarity=0.098  Sum_probs=62.8

Q ss_pred             hhHHHHhhcccchHHHHHHHhhcCCch--------hHHHHHHHHHhchhhHHHHHHHHhhcCHHHHHHHHHHHHHHhcCC
Q 004214          555 GQELENAVLDADYTKAIQVAFELRRPH--------KLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKP  626 (768)
Q Consensus       555 ~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~  626 (768)
                      .++++.++..++..+|+..+++.....        ..+..+..++... +..+++.++.+|+.++...|++||-+-+..+
T Consensus        40 ~~qvr~lL~~g~~~~ALk~aL~~pP~~~~~~~~K~~~~~~Vl~vL~si-K~sdI~~~v~~L~~~~~D~LMKYiYkGm~~~  118 (152)
T 3dwl_G           40 IPQARSAIQTGNALQGLKTLLSYVPYGNDVQEVRTQYLNAFVDVLSNI-RAADIPAFVKECSTEEIDNIVNFIYRGLANP  118 (152)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHTSSCCCSCSCHHHHHHHHHHHHHHHHTS-CGGGHHHHHHHSCHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHhCHHHHHHHHHHHHHhccCc
Confidence            467888999999999999998753211        1122222222221 2237999999999999999999998888776


Q ss_pred             --CchHHHHHHHHHHhccCCc
Q 004214          627 --KLCHVAQFVLFQLFNIHPP  645 (768)
Q Consensus       627 --~~~~~~~~~l~~~l~~~~~  645 (768)
                        ..+.+++.|-..++..-|.
T Consensus       119 ~~~~~~~LL~WHEKl~e~~G~  139 (152)
T 3dwl_G          119 QAYNSSVLLNWHEKVVEISGI  139 (152)
T ss_dssp             ---CCSHHHHHHHHHHHTTCS
T ss_pred             cccccHHHHHHHHHHHHHcCC
Confidence              5777888888777766554

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=82.32  E-value=44  Score=33.62  Aligned_cols=131  Identities=9%  Similarity=0.030  Sum_probs=63.2

Q ss_pred             CeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceEEEEec--cC---CCeEEEEEccC-CCEEEEeeC-----------C
Q 004214          382 DINSLAVAPN-DSLVCTGSQDRTACVWRLPDLVSVVTFRG--HK---RGIWSVEFSPV-DQVVITASG-----------D  443 (768)
Q Consensus       382 ~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~---~~v~~v~~s~~-~~~l~t~~~-----------d  443 (768)
                      .+.+++++|. ...+.+++..+ |...+ ..++.-..+..  ..   ..+.+++++|. ...|.++..           +
T Consensus       233 ~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~  310 (394)
T 3b7f_A          233 DPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPG  310 (394)
T ss_dssp             CEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCC
T ss_pred             ceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCC
Confidence            5889999985 45666666544 44433 22222222211  11   23567888763 333444321           2


Q ss_pred             CcEEEEeCCC-CceeEEee-cCC--C---c--EEEEEEEeC-CCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEE
Q 004214          444 KTIKIWSISD-GSCLKTFE-GHT--S---S--VLRASFLTR-GAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA  513 (768)
Q Consensus       444 ~~i~iwd~~~-~~~~~~~~-~~~--~---~--v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~  513 (768)
                      +...+|...+ |+.-..+. +-.  .   .  ...++++|. ...|+.++.++.|..- .+.|+.-..+..+-..+.++.
T Consensus       311 ~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S-~D~G~tW~~~~~~lp~~~~v~  389 (394)
T 3b7f_A          311 GKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS-ADEGEHWQCIASHLPHIYAVQ  389 (394)
T ss_dssp             SSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEE-SSTTSBCEEEECSCSCEEEEE
T ss_pred             CceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEE-CCCCCCceEcccCCCCeeEEE
Confidence            3345555443 33333322 111  0   0  134777764 3456666666655432 234444444444444577776


Q ss_pred             Ec
Q 004214          514 VG  515 (768)
Q Consensus       514 ~s  515 (768)
                      |.
T Consensus       390 ~~  391 (394)
T 3b7f_A          390 SA  391 (394)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=81.42  E-value=37  Score=32.19  Aligned_cols=205  Identities=13%  Similarity=0.073  Sum_probs=116.9

Q ss_pred             ccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecC-CCCEEEEEeCCCcEEEEE
Q 004214          190 KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE-EEQYLAVATNIEQVQVYD  268 (768)
Q Consensus       190 ~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~i~i~d  268 (768)
                      .+.+.........+.++..+..|.++.......|.....-     +......|..+.. .+ ++..++..+..|.++-..
T Consensus        23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-----ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~   96 (276)
T 3no0_A           23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-----LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIP   96 (276)
T ss_dssp             CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-----CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEE
T ss_pred             CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-----cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEE
Confidence            4566666667778899999999999876655443221111     1334566777654 33 567999999999999988


Q ss_pred             CCCce------eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC---------ceEEEeeecccCcEEEE
Q 004214          269 LSSMS------CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES---------RCCVGVGTGHMGAVGAV  333 (768)
Q Consensus       269 ~~~~~------~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~  333 (768)
                      +....      ....+... +.+..+.  ....... ++..+..|.+..++...         |...-.+.. ...|.++
T Consensus        97 l~~~~~~~~G~~~i~lkeg-D~l~~~~--~~~~~~~-ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~  171 (276)
T 3no0_A           97 LAEFEYKAQGMPIIKLTEG-DEVVSIA--SSVDETH-ILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGL  171 (276)
T ss_dssp             GGGTTTCSTTEECSCCCTT-CCEEEEE--ECCSSCE-EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEE
T ss_pred             HHHhhhhcCCeEEEecCCC-CEEEEEE--EeCCCCE-EEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEE
Confidence            75532      11123322 3343332  2233344 77788899988886432         222112222 3455555


Q ss_pred             EEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEE--EeCC
Q 004214          334 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV--WRLP  410 (768)
Q Consensus       334 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i--~d~~  410 (768)
                      ...+++. .++..+..|.++...+.........   .+..... ...+.+..+....+...++..+.+|.+..  ++..
T Consensus       172 ~~~~~~~-~ll~~T~~G~~kr~~~~e~~~~~R~---gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~  245 (276)
T 3no0_A          172 RIWNGEP-YLLVITAKGRVKKISHEEIPKTNRG---VKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK  245 (276)
T ss_dssp             EEESSCS-EEEEEETTSCEEEEEGGGSCCCCTT---CCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred             EEeCCCC-EEEEEeCCCcEEEeEHHHcccCCCC---CcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence            5555433 6888899999999887644221110   0111111 22334444433334445666677777776  7654

>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G

Probab=81.35  E-value=8.1  Score=32.27  Aligned_cols=87  Identities=18%  Similarity=0.168  Sum_probs=58.2

Q ss_pred             hhHHHHhhcccchHHHHHHHhhcCCch--------hHHHHHHHHHhchhhHHHHHHHHhhcCHHHHHHHHHHHHHHhcCC
Q 004214          555 GQELENAVLDADYTKAIQVAFELRRPH--------KLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKP  626 (768)
Q Consensus       555 ~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~  626 (768)
                      .++++.++...+..+|+..++......        ..+.++..++... ...+|+.++..|+.++...|++||-+-+..+
T Consensus        39 ~~qv~~lL~~g~~~~ALk~~L~~pP~~~k~q~~K~~~~~~Vl~VL~si-K~sdI~~~v~~L~~e~~D~LMKYiYkGm~~~  117 (151)
T 1k8k_G           39 EGEVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISF-KANDIEKAVQSLDKNGVDLLMKYIYKGFESP  117 (151)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHHHS-CGGGHHHHHHTSCHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHhChhhhhHHHHHHHHhhcCc
Confidence            557778888899999999998643211        1122222222211 1236999999999999999999998888776


Q ss_pred             Cc--hHHHHHHHHHHhcc
Q 004214          627 KL--CHVAQFVLFQLFNI  642 (768)
Q Consensus       627 ~~--~~~~~~~l~~~l~~  642 (768)
                      ..  +.+++.|-..++..
T Consensus       118 ~~~~~~~LL~WHEKl~~~  135 (151)
T 1k8k_G          118 SDNSSAVLLQWHEKALAA  135 (151)
T ss_dssp             CTTHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHh
Confidence            43  45566665555443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=81.28  E-value=54  Score=33.92  Aligned_cols=245  Identities=10%  Similarity=0.055  Sum_probs=119.6

Q ss_pred             eEEEeeeeecCCC-EEEEEEeCCCeEEEEeCCCce---EEEeee---------cccCcEEEEEEecC---CCcEEEEEeC
Q 004214          285 VLCLDTCALSSGK-ILIVTGSKDNSVRLWDSESRC---CVGVGT---------GHMGAVGAVAFSKK---LQNFLVSGSS  348 (768)
Q Consensus       285 v~~l~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~---~~~~~~---------~~~~~v~~~~~~~~---~~~~l~s~~~  348 (768)
                      ...|+  +.+++. . ++++...|.|++++.....   .+..+.         ........|+++|+   ...+.++-+.
T Consensus        16 P~~~a--~~pdG~~r-l~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           16 PVGAL--HSGDGSQR-LFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             EEEEE--CCSSSSCC-EEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             ceEEE--ECCCCCeE-EEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            34555  667775 4 5556788999999754321   111111         11356788999986   2223444332


Q ss_pred             C------------CeEEEEeCCCCCCCCccccccceeeEe--eccCCCeEEEEEccCCCEEEEEeCCC------------
Q 004214          349 D------------HTIKVWSFDGLSDDAEQPMNLKAKAVV--AAHGKDINSLAVAPNDSLVCTGSQDR------------  402 (768)
Q Consensus       349 d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg------------  402 (768)
                      +            ..|.-|.+.............+.....  .........|+|.|||.+.++.+..+            
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~  172 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGL  172 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTC
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCc
Confidence            1            134446655321111100011111111  12223468899999998877766543            


Q ss_pred             -----cEEEEeCCCC--------------------ceEEEEeccCCCeEEEEEccC-----CC-EEEEeeCCC----cEE
Q 004214          403 -----TACVWRLPDL--------------------VSVVTFRGHKRGIWSVEFSPV-----DQ-VVITASGDK----TIK  447 (768)
Q Consensus       403 -----~i~i~d~~~~--------------------~~~~~~~~~~~~v~~v~~s~~-----~~-~l~t~~~d~----~i~  447 (768)
                           .|.-.+.+..                    ....--.+|.. ...++|.|.     |+ .+..+...|    .-.
T Consensus       173 ~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e  251 (463)
T 2wg3_C          173 SDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR  251 (463)
T ss_dssp             CSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred             CCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence                 2333333321                    00111223333 457899996     34 344333212    123


Q ss_pred             EEeCCCC------ceeEEeecCC-CcEEEEEEEeC-------CCEEEEEeCCCcEEEEECCCCe---EEEEe--------
Q 004214          448 IWSISDG------SCLKTFEGHT-SSVLRASFLTR-------GAQIVSCGADGLVKLWTVRTGE---CIATY--------  502 (768)
Q Consensus       448 iwd~~~~------~~~~~~~~~~-~~v~~~~~s~~-------~~~l~s~~~dg~i~iwd~~~~~---~~~~~--------  502 (768)
                      |..+..+      .++..+..|. ..++.+.|-..       |.+|+ +...+.|....+....   ....+        
T Consensus       252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~-~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~  330 (463)
T 2wg3_C          252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVF-GDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSC  330 (463)
T ss_dssp             EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEE-EETTSCEEEEEC-----CCEEEEECEEETTSS
T ss_pred             EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEE-ecCCCcEEEEEeCCCCceeeEEEeecCCcccc
Confidence            4443333      2455554332 56778887532       33444 4445766655554321   11111        


Q ss_pred             -ccCCCcEEEEEEcCCCCEEEEEe-------CCCcEEEEEcC
Q 004214          503 -DKHEDKIWALAVGKKTEMFATGG-------SDALVNLWHDS  536 (768)
Q Consensus       503 -~~~~~~v~~l~~s~~~~~l~s~~-------~dg~v~vw~~~  536 (768)
                       ......+..+.+.|||.++++..       .+|  +||++.
T Consensus       331 ~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G--~I~Ri~  370 (463)
T 2wg3_C          331 RGYFSGHILGFGEDELGEVYILSSSKSMTQTHNG--KLYKIV  370 (463)
T ss_dssp             CSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSE--EEEEEE
T ss_pred             cccccCcceEEEECCCCCEEEEeccCCcccCCCC--cEEEec
Confidence             11236789999999999888775       234  677765

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=80.75  E-value=73  Score=35.11  Aligned_cols=233  Identities=13%  Similarity=0.109  Sum_probs=118.6

Q ss_pred             eeecCCCEEEEEEeCCC----eEEEEeCCCceEEEeeecccC--------cEEEEEEecCCCcEEEEE----------eC
Q 004214          291 CALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMG--------AVGAVAFSKKLQNFLVSG----------SS  348 (768)
Q Consensus       291 ~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~l~s~----------~~  348 (768)
                      |+.+++...+++-+..|    .++++|+.+++.+...-....        ....++|..+ ..++++.          +.
T Consensus       136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~~~~~  214 (711)
T 4hvt_A          136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEITSSLY  214 (711)
T ss_dssp             ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBCTTSS
T ss_pred             ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcCcCCC
Confidence            46677777666655554    799999999987642111100        0133477644 3344432          12


Q ss_pred             CCeEEEEeCCCCCCCCccccccceeeEeeccCCCe-EEEEEccCCCE-----EEEEeCC---CcEEEEeCCC--CceEEE
Q 004214          349 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI-NSLAVAPNDSL-----VCTGSQD---RTACVWRLPD--LVSVVT  417 (768)
Q Consensus       349 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~~~~-----l~~~~~d---g~i~i~d~~~--~~~~~~  417 (768)
                      ...|+.|.+-+..        .....++......+ .+...++++++     +++.+.+   ..+.+.+...  ++ ...
T Consensus       215 ~~~v~~~~~Gt~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~  285 (711)
T 4hvt_A          215 PNSLYIWKRGESI--------EKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQK  285 (711)
T ss_dssp             BCEEEEEETTSCG--------GGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEE
T ss_pred             CCEEEEEECCCCh--------HHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceE
Confidence            3457777765431        11222233222222 33455666652     4443322   3456666543  32 222


Q ss_pred             EeccCCCeEEEEEccCCCEEEEe----------eCCCcEEEEeCCCCc-------eeEE-ee-cCCCcEEEEEEEeCCCE
Q 004214          418 FRGHKRGIWSVEFSPVDQVVITA----------SGDKTIKIWSISDGS-------CLKT-FE-GHTSSVLRASFLTRGAQ  478 (768)
Q Consensus       418 ~~~~~~~v~~v~~s~~~~~l~t~----------~~d~~i~iwd~~~~~-------~~~~-~~-~~~~~v~~~~~s~~~~~  478 (768)
                      +.....  ..+..++++.+++..          ...+.|...|+.++.       .... +. .....+..+.+..+ ..
T Consensus       286 l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l  362 (711)
T 4hvt_A          286 INMPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RV  362 (711)
T ss_dssp             CCSCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CE
T ss_pred             eecCCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EE
Confidence            222221  122344556555532          135778999987642       2233 32 23345667777765 56


Q ss_pred             EEEEeCCC--cEEEEECCCCe-EEEE-eccC-CCcEEEEEEcCCCC-EEEEEeC---CCcEEEEEcC
Q 004214          479 IVSCGADG--LVKLWTVRTGE-CIAT-YDKH-EDKIWALAVGKKTE-MFATGGS---DALVNLWHDS  536 (768)
Q Consensus       479 l~s~~~dg--~i~iwd~~~~~-~~~~-~~~~-~~~v~~l~~s~~~~-~l~s~~~---dg~v~vw~~~  536 (768)
                      +++...+|  .|.++++.+++ .... +... .+.+....+++++. ++++.+.   -+.+..++..
T Consensus       363 ~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          363 FLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             EEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             EEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            67777777  47778877775 2233 3222 24566666777665 4444432   2445666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	768
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-39
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-31
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-29
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-22
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-21
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-18
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-32
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-26
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-21
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-26
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-23
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-20
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-19
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-25
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-24
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-22
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-18
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-14
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-24
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-15
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-14
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-22
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-17
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-16
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-15
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-15
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-21
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-17
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-15
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-14
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-13
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-21
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-18
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-14
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-13
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-13
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-19
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-13
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-12
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-18
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-17
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-17
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-15
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-16
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-16
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-14
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-16
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-16
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-13
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-16
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-15
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-14
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-12
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-12
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-15
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-13
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-12
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-14
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-09
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-14
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-11
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-10
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-09
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.004
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-13
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-13
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-10
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-12
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-11
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-11
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.003
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-10
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	7e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	6e-08
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	8e-08
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	4e-06
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	0.002
d1q7fa_	279	b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D	0.003

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  144 bits (364), Expect = 6e-39
 Identities = 65/319 (20%), Positives = 113/319 (35%), Gaps = 74/319 (23%)

Query: 276 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 335
           Y L+GH   V  +          ++V+ S+D ++++WD E+        GH  +V  ++F
Sbjct: 11  YALSGHRSPVTRV---IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67

Query: 336 SKKLQ-----------------------------------------NFLVSGSSDHTIKV 354
               +                                         + +VS S D TIK+
Sbjct: 68  DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127

Query: 355 WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS 414
           W                       H + +  +    + +L+ + S D+T  VW +     
Sbjct: 128 WEVQ----------TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 177

Query: 415 VVTFRGHKRGIWSVEF--------------------SPVDQVVITASGDKTIKIWSISDG 454
               R H+  +  + +                          +++ S DKTIK+W +S G
Sbjct: 178 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 237

Query: 455 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV 514
            CL T  GH + V    F + G  I+SC  D  +++W  +   C+ T + HE  + +L  
Sbjct: 238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 297

Query: 515 GKKTEMFATGGSDALVNLW 533
            K      TG  D  V +W
Sbjct: 298 HKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  122 bits (305), Expect = 4e-31
 Identities = 68/332 (20%), Positives = 127/332 (38%), Gaps = 26/332 (7%)

Query: 24  HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAIT 83
           +   GH+  V+ ++FHP    S++ S S+DAT++VWD        TL  H   V  ++  
Sbjct: 11  YALSGHRSPVTRVIFHPV--FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68

Query: 84  SDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIK 143
             G  L S   D  + LWD + + C  T+  ++   +  +I P        S      + 
Sbjct: 69  HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128

Query: 144 KKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQ 203
           + +    +   T     +  +       L    S+D T+   +  +K             
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188

Query: 204 GLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ 263
             +    +      +     E                     K  G+   +L   +  + 
Sbjct: 189 ECISWAPESSYSSISEATGSE--------------------TKKSGKPGPFLLSGSRDKT 228

Query: 264 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG 323
           ++++D+S+  C   L GH   V         SG   I++ + D ++R+WD +++ C+   
Sbjct: 229 IKMWDVSTGMCLMTLVGHDNWVRG---VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 285

Query: 324 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 355
             H   V ++ F K    ++V+GS D T+KVW
Sbjct: 286 NAHEHFVTSLDFHKT-APYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (289), Expect = 6e-29
 Identities = 59/384 (15%), Positives = 106/384 (27%), Gaps = 78/384 (20%)

Query: 67  VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE-MVEAVCAIP 125
              L  H S VT +      S ++SA  D  + +WD      + T+  +   V+ +    
Sbjct: 10  KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69

Query: 126 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE 185
            G    S  +    +    +                      +   +    S D TI   
Sbjct: 70  SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV-SASRDKTIKMW 128

Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
              +       T       ++    D                                  
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQD---------------------------------- 154

Query: 246 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 305
                    +A  +N + V+V+ +++  C   L  H                        
Sbjct: 155 ------GTLIASCSNDQTVRVWVVATKECKAELREHR---------------------HV 187

Query: 306 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE 365
              +      S   +   TG          S K   FL+SGS D TIK+W          
Sbjct: 188 VECISWAPESSYSSISEATGSE-----TKKSGKPGPFLLSGSRDKTIKMWDVS------- 235

Query: 366 QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGI 425
                     +  H   +  +        + + + D+T  VW   +   + T   H+  +
Sbjct: 236 ---TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV 292

Query: 426 WSVEFSPVDQVVITASGDKTIKIW 449
            S++F      V+T S D+T+K+W
Sbjct: 293 TSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.7 bits (239), Expect = 2e-22
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
             D+ + +WDV  G C     GH   V  +LFH       + S +DD T+RVWD   K+C
Sbjct: 224 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK--FILSCADDKTLRVWDYKNKRC 281

Query: 67  VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 102
           + TL+ H   VTS+        +++   D+ V +W+
Sbjct: 282 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.7 bits (226), Expect = 8e-21
 Identities = 62/234 (26%), Positives = 93/234 (39%), Gaps = 31/234 (13%)

Query: 324 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 383
           +GH   V  V F     + +VS S D TIKVW ++              +  +  H   +
Sbjct: 14  SGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYE----------TGDFERTLKGHTDSV 62

Query: 384 NSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 443
             ++   +  L+ + S D T  +W       + T  GH   + SV   P    +++AS D
Sbjct: 63  QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 122

Query: 444 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 503
           KTIK+W +  G C+KTF GH   V        G  I SC  D  V++W V T EC A   
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182

Query: 504 KHEDKIWALA--------------------VGKKTEMFATGGSDALVNLWHDST 537
           +H   +  ++                     GK      +G  D  + +W  ST
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 236

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.0 bits (206), Expect = 4e-18
 Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 43/173 (24%)

Query: 407 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS 466
           W +P         GH+  +  V F PV  V+++AS D TIK+W    G   +T +GHT S
Sbjct: 3   W-IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS 61

Query: 467 VL------------------------------------------RASFLTRGAQIVSCGA 484
           V                                             S +  G  IVS   
Sbjct: 62  VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR 121

Query: 485 DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537
           D  +K+W V+TG C+ T+  H + +  +   +   + A+  +D  V +W  +T
Sbjct: 122 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 174

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.0 bits (180), Expect = 8e-15
 Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 22/156 (14%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDT------------------DKSLLF 48
             D+ V VW V    C    + H+ VV  I + P++                      L 
Sbjct: 162 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL 221

Query: 49  SGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC 108
           SGS D T+++WD+    C+ TL  H + V  +   S G  ++S   DK + +WD ++  C
Sbjct: 222 SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 281

Query: 109 KLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQTIK 143
             T+  +E  V ++            ++    QT+K
Sbjct: 282 MKTLNAHEHFVTSLDFHKTAP---YVVTGSVDQTVK 314

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  126 bits (317), Expect = 2e-32
 Identities = 58/332 (17%), Positives = 113/332 (34%), Gaps = 44/332 (13%)

Query: 240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKIL 299
            +I D +    +     +  NI+ V       M     L GH   +  +      +   L
Sbjct: 16  NQIRDARKACADATLSQITNNIDPV---GRIQMRTRRTLRGHLAKIYAM---HWGTDSRL 69

Query: 300 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 359
           +V+ S+D  + +WDS +   V         V   A++    N++  G  D+   +++   
Sbjct: 70  LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKT 128

Query: 360 LSDDAEQPMNLKAKA-----------------------------------VVAAHGKDIN 384
              +      L                                           H  D+ 
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188

Query: 385 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK 444
           SL++AP+  L  +G+ D +A +W + + +   TF GH+  I ++ F P      T S D 
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248

Query: 445 TIKI--WSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY 502
           T ++            + +     +   SF   G  +++   D    +W     +     
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308

Query: 503 DKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
             H++++  L V       ATG  D+ + +W+
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  107 bits (268), Expect = 4e-26
 Identities = 53/328 (16%), Positives = 104/328 (31%), Gaps = 60/328 (18%)

Query: 210 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 269
           AD  L   T    P  ++++   + L G+  +I  + + G + + L  A+   ++ ++D 
Sbjct: 26  ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDS 84

Query: 270 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA 329
            + +  + +   S  V+    CA +     +  G  DN   +++ ++R      +  +  
Sbjct: 85  YTTNKVHAIPLRSSWVMT---CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141

Query: 330 VGAVAFSKKLQ--------------------------------------------NFLVS 345
                   +                                                 VS
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201

Query: 346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 405
           G+ D + K+W                 +     H  DIN++   PN +   TGS D T  
Sbjct: 202 GACDASAKLWDVR----------EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251

Query: 406 V--WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH 463
           +   R    +   +      GI SV FS   ++++    D    +W            GH
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311

Query: 464 TSSVLRASFLTRGAQIVSCGADGLVKLW 491
            + V        G  + +   D  +K+W
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 93.3 bits (230), Expect = 4e-21
 Identities = 50/335 (14%), Positives = 104/335 (31%), Gaps = 41/335 (12%)

Query: 22  CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 81
                +GH   + ++ +    D  LL S S D  + +WD      V  +    S V + A
Sbjct: 47  TRRTLRGHLAKIYAMHWGT--DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 82  ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT 141
               G+ +   G D + ++++L+            +   +       +   FL      T
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREG-----NVRVSRELAGHTGYLSCCRFLDDNQIVT 159

Query: 142 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPS 201
                        T  +         D   L     + + +S   D S + +        
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE---- 215

Query: 202 NQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI 261
                                       +  +   G+  +I  + F        A  ++ 
Sbjct: 216 ---------------------------GMCRQTFTGHESDINAICFF-PNGNAFATGSDD 247

Query: 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG 321
              +++DL +       +  + I   + + + S    L++ G  D +  +WD+      G
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIIC-GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306

Query: 322 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356
           V  GH   V  +  +      + +GS D  +K+W+
Sbjct: 307 VLAGHDNRVSCLGVTDD-GMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.2 bits (196), Expect = 1e-16
 Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 28/161 (17%)

Query: 9   DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV--WDLLAKKC 66
           D    +WDV  G C   F GH+  +++I F P+ +     +GSDDAT R+       +  
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRADQELM 262

Query: 67  VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE-MVEAVCAIP 125
             + D     +TS++ +  G  L++   D   N+WD         +  ++  V  +    
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322

Query: 126 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN 166
            G                           T      +++WN
Sbjct: 323 DGM-----------------------AVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.4 bits (150), Expect = 5e-11
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 60
             D    VWD           GH   VS +      D   + +GS D+ +++W+
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFLKIWN 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 7e-26
 Identities = 56/267 (20%), Positives = 99/267 (37%), Gaps = 25/267 (9%)

Query: 268 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM 327
               +    VL GH + V+   TC    G   IV+GS DN++++W + +  C+    GH 
Sbjct: 2   RRGELKSPKVLKGHDDHVI---TCLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57

Query: 328 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 387
           G V +      +           T +                    + V         + 
Sbjct: 58  GGVWSSQMRDNIIIS------GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 111

Query: 388 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIK 447
               D+ +     +   C+  L   V+ V    +             + V++ + D  +K
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG-----------RRVVSGAYDFMVK 160

Query: 448 IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED 507
           +W     +CL T +GHT+ V    F   G  +VS   D  +++W V TG CI T   H+ 
Sbjct: 161 VWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 218

Query: 508 KIWALAVGKKTEMFATGGSDALVNLWH 534
               + +  K  +  +G +D+ V +W 
Sbjct: 219 LTSGMEL--KDNILVSGNADSTVKIWD 243

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.7 bits (244), Expect = 5e-23
 Identities = 63/390 (16%), Positives = 126/390 (32%), Gaps = 61/390 (15%)

Query: 15  WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF 74
           W           KGH   V + L       + + SGSDD T++VW  +  KC+ TL  H 
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57

Query: 75  SRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFL 134
             V S  +  +                 + +      + T     +              
Sbjct: 58  GGVWSSQMRDNIII-----SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS 112

Query: 135 SSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFT 194
            S +         + +   + +G    VR    D   +    + D  +     +++    
Sbjct: 113 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV-SGAYDFMVKVWDPETET--- 168

Query: 195 AATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 254
                                                   L G+   +  L+F G    +
Sbjct: 169 ------------------------------------CLHTLQGHTNRVYSLQFDG---IH 189

Query: 255 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 314
           +   +    ++V+D+ + +C + L GH  +        +     ++V+G+ D++V++WD 
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLT-----SGMELKDNILVSGNADSTVKIWDI 244

Query: 315 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 374
           ++  C+    G      AV   +  +NF+++ S D T+K+W         E   NL    
Sbjct: 245 KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL----KTGEFIRNLVTLE 300

Query: 375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTA 404
                G  +  +  +    +   GS++ T 
Sbjct: 301 -SGGSGGVVWRIRASNTKLVCAVGSRNGTE 329

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.3 bits (222), Expect = 4e-20
 Identities = 71/341 (20%), Positives = 127/341 (37%), Gaps = 66/341 (19%)

Query: 231 LSKRLVGYNEEILD-LKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLD 289
             K L G+++ ++  L+F G     +   ++   ++V+   +  C   L GH+  V    
Sbjct: 8   SPKVLKGHDDHVITCLQFCG---NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 64

Query: 290 -----------------------------------TCALSSGKILIVTGSKDNSVRLWDS 314
                                                 +   +  +V+GS+D ++R+WD 
Sbjct: 65  MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 124

Query: 315 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 374
           E+  C+ V    MG V AV   +     +VSG+ D  +KVW  +                
Sbjct: 125 ETGQCLHV---LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE------------TETC 169

Query: 375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 434
           +    G      ++  +   V +GS D +  VW +     + T  GH+     +E     
Sbjct: 170 LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-- 227

Query: 435 QVVITASGDKTIKIWSISDGSCL---KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW 491
            ++++ + D T+KIW I  G CL   +    H S+V    F      +++   DG VKLW
Sbjct: 228 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLW 285

Query: 492 TVRTGECIATY-----DKHEDKIWALAVGKKTEMFATGGSD 527
            ++TGE I              +W +       + A G  +
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.6 bits (215), Expect = 4e-19
 Identities = 51/239 (21%), Positives = 93/239 (38%), Gaps = 30/239 (12%)

Query: 263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV 322
            ++V+D+ +  C +VL GH   V C+           +V+G+ D  V++WD E+  C+  
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYD-----GRRVVSGAYDFMVKVWDPETETCLHT 172

Query: 323 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 382
             GH   V ++ F       +VSGS D +I+VW  +                +    G  
Sbjct: 173 LQGHTNRVYSLQFD---GIHVVSGSLDTSIRVWDVE------------TGNCIHTLTGHQ 217

Query: 383 INSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVVITAS 441
             +  +   D+++ +G+ D T  +W +     + T +G +K              VIT+S
Sbjct: 218 SLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSS 277

Query: 442 GDKTIKIWSISDGSCLKTF-----EGHTSSVLRASFLTRGAQIVSCGADGL----VKLW 491
            D T+K+W +  G  ++        G    V R               +G     + + 
Sbjct: 278 DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 6e-14
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 407 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS 466
           WR  +L S    +GH   + +         +++ S D T+K+WS   G CL+T  GHT  
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 467 VLRASF 472
           V  +  
Sbjct: 60  VWSSQM 65

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 9e-09
 Identities = 52/353 (14%), Positives = 105/353 (29%), Gaps = 95/353 (26%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDT------------------------ 42
             D  + VW    G C     GH G V S     +                         
Sbjct: 34  SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTL 93

Query: 43  ------------DKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLI 90
                        +  + SGS DAT+RVWD+   +C+  L  H + V  +        ++
Sbjct: 94  YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR--RVV 151

Query: 91  SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 150
           S   D +V +WD    +C  T+  +                                   
Sbjct: 152 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG------------------------ 187

Query: 151 IHFITVGERGIVRMWNAD-SACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVT 209
           IH ++      +R+W+ +   C++         S              +   +  L+   
Sbjct: 188 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-------------GMELKDNILVSGN 234

Query: 210 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 269
           AD  + ++        +     +K          +       + ++  +++   V+++DL
Sbjct: 235 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-------KNFVITSSDDGTVKLWDL 287

Query: 270 SSMSCSYVL-----AGHSEIVLCLDTCALSSGKILIVTGSKDNS----VRLWD 313
            +      L      G   +V        S+ K++   GS++ +    + + D
Sbjct: 288 KTGEFIRNLVTLESGGSGGVVWR---IRASNTKLVCAVGSRNGTEETKLLVLD 337

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (263), Expect = 4e-25
 Identities = 43/210 (20%), Positives = 79/210 (37%), Gaps = 22/210 (10%)

Query: 303 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD 362
           GS D +VR+WD  +  C    +   G             ++ +GS D  ++VW  +    
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD-GKYIAAGSLDRAVRVWDSE---T 236

Query: 363 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV------- 415
                           H   + S+    +   V +GS DR+  +W L +  +        
Sbjct: 237 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296

Query: 416 -----VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL-- 468
                VT+ GHK  + SV  +  D+ +++ S D+ +  W    G+ L   +GH +SV+  
Sbjct: 297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 356

Query: 469 ----RASFLTRGAQIVSCGADGLVKLWTVR 494
                +S         +   D   ++W  +
Sbjct: 357 AVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (252), Expect = 9e-24
 Identities = 61/311 (19%), Positives = 105/311 (33%), Gaps = 32/311 (10%)

Query: 253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV-----LCLDTCALSSGKILIVTGSKDN 307
           +YLA   N +  QVY +S  S    L+  S        L   +   S   I  V  S D 
Sbjct: 75  EYLATGCN-KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG 133

Query: 308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 367
                 +E R        +   V  +   ++     +         V      +      
Sbjct: 134 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS-LDYFPSGDKLVSGSGDRTVRIWDL 192

Query: 368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-------VSVVTFRG 420
              +    ++             +   +  GS DR   VW                +  G
Sbjct: 193 RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG 252

Query: 421 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS------------CLKTFEGHTSSVL 468
           HK  ++SV F+   Q V++ S D+++K+W++ + +            C  T+ GH   VL
Sbjct: 253 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312

Query: 469 RASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV------GKKTEMFA 522
             +       I+S   D  V  W  ++G  +     H + + ++AV      G +  +FA
Sbjct: 313 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372

Query: 523 TGGSDALVNLW 533
           TG  D    +W
Sbjct: 373 TGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.7 bits (244), Expect = 1e-22
 Identities = 56/374 (14%), Positives = 116/374 (31%), Gaps = 36/374 (9%)

Query: 2   FALLEGADRKVLVWDVDGGFCT----HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR 57
            AL +  +   ++++           H    H  VV  + F  D     L +G +  T +
Sbjct: 30  DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG--EYLATGCNK-TTQ 86

Query: 58  VWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM 117
           V+ +     VA L    +         + +T  S   D  +          K      E 
Sbjct: 87  VYRVSDGSLVARLSDDSAANKDP---ENLNTSSSPSSDLYIRSVCF-SPDGKFLATGAED 142

Query: 118 VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS 177
                           L  + Q              ++      VR+W+  +       S
Sbjct: 143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 202

Query: 178 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG 237
            +  ++        G   A    S    + V   +   L   ++          ++   G
Sbjct: 203 IEDGVTTVAVSPGDGKYIAAG--SLDRAVRVWDSETGFLVERLDSE--------NESGTG 252

Query: 238 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVL---------CL 288
           + + +  + F   + Q +   +    V++++L + +        +              +
Sbjct: 253 HKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 311

Query: 289 DTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ-----NFL 343
            + A +     I++GSKD  V  WD +S   + +  GH  +V +VA +         N  
Sbjct: 312 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371

Query: 344 VSGSSDHTIKVWSF 357
            +GS D   ++W +
Sbjct: 372 ATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.4 bits (212), Expect = 1e-18
 Identities = 55/284 (19%), Positives = 93/284 (32%), Gaps = 30/284 (10%)

Query: 280 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 339
            H+ +V C      S+    + TG  + + +++       V   +    A          
Sbjct: 60  DHTSVVCC---VKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS 115

Query: 340 QNFL-------VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 392
            +         V  S D        +          N K   ++  H +DI SL   P+ 
Sbjct: 116 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 175

Query: 393 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 452
             + +GS DRT  +W L      +T                 + +   S D+ +++W   
Sbjct: 176 DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 235

Query: 453 DGSC-------LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-------- 497
            G          ++  GH  SV    F   G  +VS   D  VKLW ++           
Sbjct: 236 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 498 ----CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537
               C  TY  H+D + ++A  +  E   +G  D  V  W   +
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.4 bits (199), Expect = 6e-17
 Identities = 53/261 (20%), Positives = 105/261 (40%), Gaps = 21/261 (8%)

Query: 300 IVTGSKDNSVRLWDSESRCCVGVG----TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 355
            +    ++   L++      + V       H   V  V FS     +L +G  + T +V+
Sbjct: 31  ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSND-GEYLATGC-NKTTQVY 88

Query: 356 SFDGLS--------DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 407
                S          A +       +   +    I S+  +P+   + TG++DR   +W
Sbjct: 89  RVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW 148

Query: 408 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 467
            + +   V+  +GH++ I+S+++ P    +++ SGD+T++IW +  G C  T        
Sbjct: 149 DIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT 208

Query: 468 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK-------HEDKIWALAVGKKTEM 520
             A     G  I +   D  V++W   TG  +   D        H+D ++++   +  + 
Sbjct: 209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 268

Query: 521 FATGGSDALVNLWHDSTAAER 541
             +G  D  V LW+   A  +
Sbjct: 269 VVSGSLDRSVKLWNLQNANNK 289

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.1 bits (180), Expect = 1e-14
 Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 20/116 (17%)

Query: 7   GADRKVLVWDVDGG------------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 54
             DR V +W++                C   + GHK  V S+    + +   + SGS D 
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE--YILSGSKDR 330

Query: 55  TVRVWDLLAKKCVATLDKHFSRVTSMAITS------DGSTLISAGRDKVVNLWDLR 104
            V  WD  +   +  L  H + V S+A+ +      + +   +   D    +W  +
Sbjct: 331 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (250), Expect = 4e-24
 Identities = 64/300 (21%), Positives = 116/300 (38%), Gaps = 48/300 (16%)

Query: 271 SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 330
           S+   +  +  S+ V CL        +  IV+G +DN++++WD  +  C  + TGH G+V
Sbjct: 4   SLQRIHCRSETSKGVYCLQ----YDDQ-KIVSGLRDNTIKIWDKNTLECKRILTGHTGSV 58

Query: 331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA- 389
             + + +++     S S+     V + + L+        +             +      
Sbjct: 59  LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 118

Query: 390 ---------------------------PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK 422
                                       +D  + + S DRT  VW       V T  GHK
Sbjct: 119 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 178

Query: 423 RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSC 482
           RGI  +++    ++V++ S D TI++W I  G+CL+  EGH    L         +IVS 
Sbjct: 179 RGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIRFDNKRIVSG 234

Query: 483 GADGLVKLWTVRTGE---------CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
             DG +K+W +             C+ T  +H  +++ L   +      +   D  + +W
Sbjct: 235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (182), Expect = 3e-15
 Identities = 46/300 (15%), Positives = 107/300 (35%), Gaps = 22/300 (7%)

Query: 65  KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 124
           + +    +    V  +    D   ++S  RD  + +WD     CK  +  +    +V  +
Sbjct: 6   QRIHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHT--GSVLCL 61

Query: 125 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 184
                     SS +   +        ++ +      ++ +   +   +   K   + + +
Sbjct: 62  QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV-W 120

Query: 185 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILD 244
           +M           ++     +  V  D + ++  + +   K       + +   N     
Sbjct: 121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG 180

Query: 245 LKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS 304
           +  L   ++ +   ++   ++++D+   +C  VL GH E+V C+           IV+G+
Sbjct: 181 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD-----NKRIVSGA 235

Query: 305 KDNSVRLWDSES---------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 355
            D  +++WD  +           C+     H G V  + F +     +VS S D TI +W
Sbjct: 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ---IVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (171), Expect = 7e-14
 Identities = 43/261 (16%), Positives = 86/261 (32%), Gaps = 36/261 (13%)

Query: 324 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW---------SFDGLSDDAEQPMNLKAKA 374
           +     V  + +       +VSG  D+TIK+W            G +         +   
Sbjct: 12  SETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68

Query: 375 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVE----- 429
           +  +    +    V   + L             R  + + V   +     +W +      
Sbjct: 69  ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI 128

Query: 430 ---------------FSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT 474
                              D+ +++ASGD+TIK+W+ S    ++T  GH   +    +  
Sbjct: 129 TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY-- 186

Query: 475 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
           R   +VS  +D  ++LW +  G C+   + HE+ +    +    +   +G  D  + +W 
Sbjct: 187 RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKIKVWD 244

Query: 535 DSTAAEREEAFRKEEEAVLRG 555
              A +            L  
Sbjct: 245 LVAALDPRAPAGTLCLRTLVE 265

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 2e-12
 Identities = 38/298 (12%), Positives = 85/298 (28%), Gaps = 22/298 (7%)

Query: 26  FKGHKGVVSSIL-FHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS 84
                     +     D     + SG  D T+++WD    +C   L  H   V  +    
Sbjct: 8   IHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 85  DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKK 144
               +I  G           +    L    +     +          +     +      
Sbjct: 66  R---VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122

Query: 145 KRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQG 204
              +       +                    S D TI  ++ ++       T+    +G
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTI--KVWNTSTCEFVRTLNGHKRG 180

Query: 205 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 264
           + C+    +L++  + +   +  ++     L         ++ +  + + +       ++
Sbjct: 181 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKI 240

Query: 265 QVYDLSSM---------SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 313
           +V+DL +           C   L  HS  V  L           IV+ S D+++ +WD
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ----FDEF-QIVSSSHDDTILIWD 293

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.0 bits (242), Expect = 1e-22
 Identities = 51/343 (14%), Positives = 94/343 (27%), Gaps = 21/343 (6%)

Query: 25  YFKGHKGVVSSILFHPDTDKSLL-FSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAIT 83
           YF+G  G   +  FH   D  +       DA +        + + TL+ H   V ++ I+
Sbjct: 2   YFQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTIS 60

Query: 84  SDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM------VEAVCAIPPGSAFDSFLSSY 137
           +    + + G    V +WD+     K  V   +       + +   +P G          
Sbjct: 61  NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTL-IVGGEA 118

Query: 138 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAAT 197
           +  +I             +          A S       S     +  + D         
Sbjct: 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ 178

Query: 198 VLPSNQGLLCVTADQQLLLYTTV----EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 253
                 G  C+          T      V    +      +   +  +I  L +    E 
Sbjct: 179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEW 238

Query: 254 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 313
                            +    Y L  H   VL       +      V+  KDN +  W 
Sbjct: 239 L--AVGMESSNVEVLHVNKPDKYQLHLHESCVLS---LKFAYCGKWFVSTGKDNLLNAWR 293

Query: 314 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356
           +     +   +    +V +   S     ++V+GS D    V+ 
Sbjct: 294 TPYGASIFQ-SKESSSVLSCDISVD-DKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (201), Expect = 2e-17
 Identities = 43/293 (14%), Positives = 83/293 (28%), Gaps = 47/293 (16%)

Query: 280 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV-----GTGHMGAVGAVA 334
            H E+V  +    +S+    + TG     V++WD                     + +  
Sbjct: 49  NHGEVVCAV---TISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104

Query: 335 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA---------------- 378
                   L+ G    T+ +W     +   +  +   A A  A                 
Sbjct: 105 LLPD-GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163

Query: 379 ------------------HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 420
                             H    + + ++ + + + TG  D T   W        +    
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD-LREGRQLQQHD 222

Query: 421 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 480
               I+S+ + P  + +        +++  ++          H S VL   F   G   V
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFV 281

Query: 481 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
           S G D L+  W    G  I    K    + +  +    +   TG  D    ++
Sbjct: 282 STGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (193), Expect = 2e-16
 Identities = 46/320 (14%), Positives = 89/320 (27%), Gaps = 15/320 (4%)

Query: 1   MFALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 60
           M  +    D  +           +    H  VV ++     T    +++G     V+VWD
Sbjct: 23  MQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPT--RHVYTGGKG-CVKVWD 78

Query: 61  L-----LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT--VP 113
           +      +           + + S  +  DG TLI  G    +++WDL   + ++   + 
Sbjct: 79  ISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT 138

Query: 114 TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 173
           +        AI P S       S     +        +        G   +  ++     
Sbjct: 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL 198

Query: 174 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK 233
                D T+        R             L      + L +       E        K
Sbjct: 199 WTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258

Query: 234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCAL 293
             +  +E  +         ++         +  +     +  +     S  VL    C +
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLS---CDI 314

Query: 294 SSGKILIVTGSKDNSVRLWD 313
           S     IVTGS D    +++
Sbjct: 315 SVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (187), Expect = 1e-15
 Identities = 41/326 (12%), Positives = 91/326 (27%), Gaps = 47/326 (14%)

Query: 208 VTADQQLLLYTTVEVPEKKMELILSKRLV---GYNEEILDLKFLGEEEQYLAVATNIEQV 264
           VTAD Q+              +    R +    + E +  +       +++        V
Sbjct: 17  VTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTI-SNPTRHVYTGGK-GCV 74

Query: 265 QVYDLSSMSCSYVLA-----GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 319
           +V+D+S       ++          +     C L      ++ G + +++ +WD  +   
Sbjct: 75  KVWDISHPGNKSPVSQLDCLNRDNYIRS---CKLLPDGCTLIVGGEASTLSIWDLAAPTP 131

Query: 320 VGVGTGHMGAVGAVAFSKKLQNFLVSGS-------------------------------- 347
                    A    A +    + +                                    
Sbjct: 132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 191

Query: 348 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 407
           S+   K+W+    +      +    +         I SL   P    +  G +     V 
Sbjct: 192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251

Query: 408 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 467
            +           H+  + S++F+   +  ++   D  +  W    G+ +      +SSV
Sbjct: 252 HVNK-PDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSV 309

Query: 468 LRASFLTRGAQIVSCGADGLVKLWTV 493
           L          IV+   D    ++ V
Sbjct: 310 LSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 7e-15
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 3/83 (3%)

Query: 21  FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM 80
              +    H+  V S+ F          S   D  +  W       +    K  S V S 
Sbjct: 256 PDKYQLHLHESCVLSLKFAYCGK--WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSC 312

Query: 81  AITSDGSTLISAGRDKVVNLWDL 103
            I+ D   +++   DK   ++++
Sbjct: 313 DISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 5e-10
 Identities = 17/137 (12%), Positives = 34/137 (24%), Gaps = 6/137 (4%)

Query: 379 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI 438
             K   S  V  +  +              +P     +    H   + +V  S   + V 
Sbjct: 8   GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVY 67

Query: 439 TASGDKTIKIWSISDGSCLKT-----FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 493
           T      +K+W IS                 + +     L  G  ++  G    + +W +
Sbjct: 68  TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126

Query: 494 RTGECIATYDKHEDKIW 510
                    +       
Sbjct: 127 AAPTPRIKAELTSSAPA 143

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 2e-09
 Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 3/56 (5%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 62
           G D  +  W    G            V S     D     + +GS D    V++++
Sbjct: 284 GKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVD--DKYIVTGSGDKKATVYEVI 336

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 94.5 bits (233), Expect = 2e-21
 Identities = 51/396 (12%), Positives = 110/396 (27%), Gaps = 42/396 (10%)

Query: 33  VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVTSMAITSDGSTLI 90
           +S   ++ D  ++ +    ++  V +++    K   V  L +H  +VT +    D + ++
Sbjct: 10  ISCHAWNKD--RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67

Query: 91  SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 150
           + G D+   +W L+  + K T+    +  A   +        F      + I        
Sbjct: 68  TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY---- 123

Query: 151 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA 210
                          N    C + +K    T+            AA        +     
Sbjct: 124 -----------FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI 172

Query: 211 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS 270
            +            K     L          +  + F       +A  ++   V + D  
Sbjct: 173 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF-SANGSRVAWVSHDSTVCLADAD 231

Query: 271 SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 330
                  LA  +  +L        +   L+  G  D    L+  +S        G +   
Sbjct: 232 KKMAVATLASETLPLLA---VTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVP 287

Query: 331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 390
              +            ++    +       S+ +          + + H   ++ ++V  
Sbjct: 288 KQSSQR--------GLTARERFQNLDKKASSEGSAAA----GAGLDSLHKNSVSQISVLS 335

Query: 391 ND----SLVCTGSQDRTACVWRLPDLVSVVTFRGHK 422
                 S  CT   D    +W +  L S    +  K
Sbjct: 336 GGKAKCSQFCTTGMDGGMSIWDVRSLES--ALKDLK 369

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.8 bits (200), Expect = 3e-17
 Identities = 46/283 (16%), Positives = 88/283 (31%), Gaps = 33/283 (11%)

Query: 279 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT--GHMGAVGAVAFS 336
           A HS +V  +   A +  +  I     ++ V +++      V V     H G V  V ++
Sbjct: 1   AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 337 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 396
               N +V+  +D    VW+         +    K   V+    +    +  APN+    
Sbjct: 61  PD-SNRIVTCGTDRNAYVWTL--------KGRTWKPTLVILRINRAARCVRWAPNEKKFA 111

Query: 397 TGSQDRTACVWRLPDLVS----VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 452
            GS  R   +                +  +  + S+++ P   ++   S D   +I+S  
Sbjct: 112 VGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY 171

Query: 453 DGS------------------CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 494
                                 +         V    F   G+++     D  V L    
Sbjct: 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231

Query: 495 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537
               +AT       + A+    ++ + A G     V   +DS 
Sbjct: 232 KKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSA 274

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.4 bits (186), Expect = 2e-15
 Identities = 34/362 (9%), Positives = 95/362 (26%), Gaps = 32/362 (8%)

Query: 7   GADRKVLVWDVDGG--FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 64
             + +V +++  G      H  K H G V+ + + PD+  + + +   D    VW L  +
Sbjct: 26  PNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS--NRIVTCGTDRNAYVWTLKGR 83

Query: 65  --KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 122
             K    + +       +    +          +V+++      +        +      
Sbjct: 84  TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKP---- 139

Query: 123 AIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 182
                              +        +           R+++A    + E+ +     
Sbjct: 140 --------------IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185

Query: 183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEI 242
           S          ++++    +         +   +     V     +  ++   +      
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245

Query: 243 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVT 302
           L       E   +A   +     ++   S +      G  ++       +          
Sbjct: 246 LLAVTFITESSLVAAGHD-CFPVLFTYDSAAGKLSFGGRLDVP---KQSSQRGLTARERF 301

Query: 303 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS---KKLQNFLVSGSSDHTIKVWSFDG 359
            + D       S +    G+ + H  +V  ++     K   +   +   D  + +W    
Sbjct: 302 QNLDKKASSEGSAAA-GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360

Query: 360 LS 361
           L 
Sbjct: 361 LE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.2 bits (175), Expect = 5e-14
 Identities = 43/342 (12%), Positives = 97/342 (28%), Gaps = 66/342 (19%)

Query: 253 QYLAVATNIEQVQVYDLSS--MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 310
             +A+  N  +V +Y+ S       + L  H+  V  +     +     IVT   D +  
Sbjct: 20  TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGV---DWAPDSNRIVTCGTDRNAY 76

Query: 311 L----------------------------------------------WDSESRCCVGVGT 324
           +                                              ++ E+   V    
Sbjct: 77  VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 136

Query: 325 GHMGAVGAVAFSKKLQNFLVSGSSDH-TIKVWSFDGLSDDAEQP--------MNLKAKAV 375
                   ++      + L++  S     +++S      +               +    
Sbjct: 137 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE 196

Query: 376 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ 435
            ++    ++ +  + N S V   S D T C+      ++V T       + +V F   + 
Sbjct: 197 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ES 255

Query: 436 VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 495
            ++ A  D    +++    +   +F G      ++S     A+      D          
Sbjct: 256 SLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE-GSA 314

Query: 496 GECIATYDKHEDKIWALAV----GKKTEMFATGGSDALVNLW 533
                    H++ +  ++V      K   F T G D  +++W
Sbjct: 315 AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.7 bits (171), Expect = 2e-13
 Identities = 50/426 (11%), Positives = 102/426 (23%), Gaps = 78/426 (18%)

Query: 77  VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS 136
           ++  A   D + +     +  V++++             E    V  +        +   
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGV-------DWAPD 62

Query: 137 YNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAA 196
            N               +T G      +W                               
Sbjct: 63  SN-------------RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 109

Query: 197 TVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLA 256
             + S   ++ +            +    K      +  V   +              LA
Sbjct: 110 FAVGSGSRVISI-----CYFEQENDWWVCKHIKKPIRSTVLSLDWH-------PNSVLLA 157

Query: 257 VATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 316
             +   + +++                                        +        
Sbjct: 158 AGSCDFKCRIFSAYIKEVEE---------------------------RPAPTPWGSKMPF 190

Query: 317 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 376
              +   +   G V  V FS    + +   S D T+ +   D     A            
Sbjct: 191 GELMFESSSSCGWVHGVCFSAN-GSRVAWVSHDSTVCLADADKKMAVATLAS-------- 241

Query: 377 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV 436
                 + ++      SLV  G  D    ++        ++F G            +   
Sbjct: 242 --ETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTAR 298

Query: 437 VITASGDKTIKIW-SISDGSCLKTFEGHTSSVLRASFLTRG----AQIVSCGADGLVKLW 491
               + DK      S + G+ L +   H +SV + S L+ G    +Q  + G DG + +W
Sbjct: 299 ERFQNLDKKASSEGSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356

Query: 492 TVRTGE 497
            VR+ E
Sbjct: 357 DVRSLE 362

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.8 bits (231), Expect = 4e-21
 Identities = 46/357 (12%), Positives = 111/357 (31%), Gaps = 35/357 (9%)

Query: 26  FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD 85
            +GH   V + L     + + + +G+DD  +RV+D + KK +  L  H   V ++   + 
Sbjct: 8   LRGHMTSVITCL---QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AH 63

Query: 86  GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEA-----------------------VC 122
           G  L+S   D+ V +WD++   C      +                            V 
Sbjct: 64  GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

Query: 123 AIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 182
            +P  S+       ++   +             +          +    +    S D T+
Sbjct: 124 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 183

Query: 183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEI 242
                   +     +             +++  +  +++   +  +L   + +       
Sbjct: 184 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT 243

Query: 243 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVT 302
             +  L   +++L  A     ++ +D +  S  +     +   +            ++V+
Sbjct: 244 ALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAI----TTFYVSDNILVS 299

Query: 303 GSKDNSVRLWDSESRCCVGVG-TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 358
           GS +N   +++  S   V          + +V F  K    + +   D    +   D
Sbjct: 300 GS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK--TLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.4 bits (204), Expect = 8e-18
 Identities = 61/333 (18%), Positives = 114/333 (34%), Gaps = 54/333 (16%)

Query: 251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 310
           E+ Y+    + + ++VYD  +      L+GH   V  L     + G IL+   +      
Sbjct: 22  EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL---KYAHGGILVSGSTDRTVRV 78

Query: 311 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 370
               +  C       +           K   ++V+GS D+T+ VW     S   +     
Sbjct: 79  WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 138

Query: 371 KAKAVVAAHGKDINSLAVAPNDS-----------LVCTGSQDRTACVWRLPDLVSVVTFR 419
               V     ++   + V                +V +GS D T  VW +  +  +    
Sbjct: 139 DYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 198

Query: 420 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE------------------ 461
           GH   I+S  +    +  I+AS D TI+IW + +G  + T +                  
Sbjct: 199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVS 258

Query: 462 --------------------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI-A 500
                                H +++   +       I+  G++    ++ +R+G+ + A
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA 318

Query: 501 TYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
              K  D+IW++    KT + A    D    L 
Sbjct: 319 NILKDADQIWSVNFKGKT-LVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.2 bits (175), Expect = 4e-14
 Identities = 54/255 (21%), Positives = 93/255 (36%), Gaps = 35/255 (13%)

Query: 277 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS 336
            L GH   V+   TC        ++TG+ D  +R++DS ++  +   +GH G V A+ ++
Sbjct: 7   TLRGHMTSVI---TCLQFEDN-YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62

Query: 337 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 396
                 LVSGS+D T++VW             +                +    N   + 
Sbjct: 63  H--GGILVSGSTDRTVRVWDIKKGCCTHVFEGH--------NSTVRCLDIVEYKNIKYIV 112

Query: 397 TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI------------------ 438
           TGS+D T  VW+LP   SV                  +   +                  
Sbjct: 113 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN 172

Query: 439 ---TASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 495
              + S D T+ +W ++   CL    GHT  +    +     + +S   D  +++W +  
Sbjct: 173 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 232

Query: 496 GECIATYDKHEDKIW 510
           GE + T   H   + 
Sbjct: 233 GELMYTLQGHTALVG 247

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.7 bits (171), Expect = 1e-13
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 4/119 (3%)

Query: 417 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476
           T RGH   + +      D  VIT + DK I+++   +   L    GH   V    +   G
Sbjct: 7   TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHG 64

Query: 477 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEM--FATGGSDALVNLW 533
             +VS   D  V++W ++ G C   ++ H   +  L + +   +    TG  D  +++W
Sbjct: 65  GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.4 bits (165), Expect = 8e-13
 Identities = 23/140 (16%), Positives = 58/140 (41%), Gaps = 4/140 (2%)

Query: 373 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP 432
           +  +  H   + +  +   D+ V TG+ D+   V+   +   ++   GH  G+W+++++ 
Sbjct: 5   RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63

Query: 433 VDQVVITASGDKTIKIWSISD--GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL 490
              ++++ S D+T+++W I     + +      T   L          IV+   D  + +
Sbjct: 64  -GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122

Query: 491 WTVRTGECIATYDKHEDKIW 510
           W +     +  + +  D   
Sbjct: 123 WKLPKESSVPDHGEEHDYPL 142

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.8 bits (140), Expect = 1e-09
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 15  WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV-ATLDKH 73
              D    +  F  H   +S+I        ++L SGS++    +++L + K V A + K 
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYV-SDNILVSGSEN-QFNIYNLRSGKLVHANILKD 323

Query: 74  FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS 107
             ++ S+        + +  +D    L  L D+S
Sbjct: 324 ADQIWSVNFKGKT-LVAAVEKDGQSFLEIL-DFS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (138), Expect = 1e-09
 Identities = 10/78 (12%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 459 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT 518
           T  GH +SV+          +++   D +++++     + +     H+  +WAL      
Sbjct: 7   TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 519 EMFATGGSDALVNLWHDS 536
            + +      +       
Sbjct: 66  ILVSGSTDRTVRVWDIKK 83

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 4e-08
 Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 2/75 (2%)

Query: 379 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV-VTFRGHKRGIWSVEFSPVDQVV 437
           H  +++++        +     +    ++ L     V          IWSV F     +V
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG-KTLV 338

Query: 438 ITASGDKTIKIWSIS 452
                D    +  + 
Sbjct: 339 AAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 7   GADRKVLVWDVDGGFCTH-YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 61
           G++ +  ++++  G   H         + S+ F   T   L+ +   D    +  L
Sbjct: 300 GSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT---LVAAVEKDGQSFLEIL 352

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 86.4 bits (212), Expect = 8e-19
 Identities = 30/316 (9%), Positives = 72/316 (22%), Gaps = 30/316 (9%)

Query: 252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 311
             Y+      +++ V D   M+   V+         +       G+I   T +K  S+  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 312 WDSESRCCVGVGTGHMG-----AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ 366
            D  +   +G            ++   A S   +   +  S             +  A  
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 367 PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRG-- 424
                ++       + I  LA A + S +    +D          LV     +  +    
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180

Query: 425 -------------------IWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-FEGHT 464
                                              +    +    +  G           
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240

Query: 465 SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG 524
                 +      +        +++ + +     I          +++ V         G
Sbjct: 241 VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLG 297

Query: 525 GSDALVNLWHDSTAAE 540
           G+   +  +   T  +
Sbjct: 298 GALGDLAAYDAETLEK 313

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 70.2 bits (170), Expect = 2e-13
 Identities = 34/342 (9%), Positives = 85/342 (24%), Gaps = 25/342 (7%)

Query: 7   GADRKVLVWDVDGGFCTHYFK--GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 64
               K++V D +                    +  P   +    + +   ++   DL+  
Sbjct: 8   ARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG-GRIAYATVNKSESLVKIDLVTG 66

Query: 65  KCVATLDKH-----FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVE 119
           + +  +D          +   A++ DG TL        + L        ++ +   E + 
Sbjct: 67  ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS 126

Query: 120 AVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD 179
              A            + +   +    R L +     G   +V      S         D
Sbjct: 127 RRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGT--LVEDKPIQSWEAETYAQPD 184

Query: 180 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYN 239
           V   +   +S                       +    T +   + +   +  + +   +
Sbjct: 185 VLAVWNQHESSGVMATPFYTARKDIDPADPTAYR----TGLLTMDLETGEMAMREVRIMD 240

Query: 240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKIL 299
                                   ++ +DL   +    +         +    +S+    
Sbjct: 241 VFYFSTAVNP---AKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSV---NVSTDGST 293

Query: 300 IVTGSKDNSVRLWDSESRCCVGV----GTGHMGAVGAVAFSK 337
           +  G     +  +D+E+    G     G   M       F++
Sbjct: 294 VWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTR 335

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 66.4 bits (160), Expect = 3e-12
 Identities = 26/396 (6%), Positives = 72/396 (18%), Gaps = 68/396 (17%)

Query: 44  KSLLFSGSDDATVRVWDLLAKKCVATLD--KHFSRVTSMAITSDGSTL-ISAGRDKVVNL 100
           +  + + +    + V D         +             +   G     +  + + +  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 101 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 160
            DL        +                +      S + +T+           I      
Sbjct: 61  IDLVTGETLGRIDLS------TPEERVKSLFGAALSPDGKTL----------AIYESPVR 104

Query: 161 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV 220
           +                ++     +  ++ R  T          L  +  D  ++     
Sbjct: 105 LELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEA- 163

Query: 221 EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG 280
                                       G   +   + +               +     
Sbjct: 164 ----------------------------GTLVEDKPIQS---WEAETYAQPDVLAVWNQH 192

Query: 281 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 340
            S  V+                 +    +   D E+          M            +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 400
                  + + ++ +  +  +     P                 S+ V+ + S V  G  
Sbjct: 253 TRAF--GAYNVLESFDLEKNASIKRVP-----------LPHSYYSVNVSTDGSTVWLGGA 299

Query: 401 DRTACVWRLPDLVSVVTFR----GHKRGIWSVEFSP 432
                 +    L                     F+ 
Sbjct: 300 LGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTR 335

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.7 bits (135), Expect = 3e-09
 Identities = 42/336 (12%), Positives = 85/336 (25%), Gaps = 32/336 (9%)

Query: 205 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 264
           +L      +L++  T     +KM +     +       +            A     E +
Sbjct: 4   ILAPARPDKLVVIDT-----EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESL 58

Query: 265 QVYDLSSMSC--SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC--- 319
              DL +        L+   E V  L   ALS     +        + L   E +     
Sbjct: 59  VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118

Query: 320 --------VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS------FDGLSDDAE 365
                             +  +A+++        G   H +   +          S +AE
Sbjct: 119 LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAE 178

Query: 366 QPMNLKAKAVVAA----HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD-LVSVVTFRG 420
                   AV                   +       +         L    +++   R 
Sbjct: 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238

Query: 421 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 480
                +S   +P             ++ + +   + +K       S    +  T G+ + 
Sbjct: 239 MDVFYFSTAVNPAKTRA--FGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVW 295

Query: 481 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK 516
             GA G +  +   T E     D   +   +LA  +
Sbjct: 296 LGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVR 331

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.3 bits (209), Expect = 2e-18
 Identities = 42/356 (11%), Positives = 84/356 (23%), Gaps = 34/356 (9%)

Query: 26  FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL---DKHFSRVTSMAI 82
            +  K  +S I   P   KSLL   S D ++ V+    +     L    ++   +     
Sbjct: 7   EQAPKDYISDIKIIPS--KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 83  TSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI 142
             +    I  G  +   L      S      T                D  +++     I
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124

Query: 143 KKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSN 202
           +          +   +          +       +S   I    +   + F        N
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184

Query: 203 QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE 262
                                      I    L+   +E      +             +
Sbjct: 185 ----------------GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228

Query: 263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV 322
                   +  C  +    + +   +++   S     + T   D  +  W+ ++R  +  
Sbjct: 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288

Query: 323 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS-----------DDAEQP 367
                     V  +    N L   +SD T K  +    +            D E P
Sbjct: 289 FAKF-NEDSVVKIACS-DNILCLATSDDTFKTNAAIDQTIELNASSIYIIFDYENP 342

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.3 bits (196), Expect = 8e-17
 Identities = 31/323 (9%), Positives = 72/323 (22%), Gaps = 65/323 (20%)

Query: 272 MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV---GTGHMG 328
           M    +     + +  +    +   K L++  S D S+ ++  + +           +  
Sbjct: 1   MQIVQIEQAPKDYISDI---KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH 57

Query: 329 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG----------------------------- 359
            +    F       +  G+    I      G                             
Sbjct: 58  PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIA 117

Query: 360 ----------LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 409
                        +    +                   +  N S +  G  +     +RL
Sbjct: 118 ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRL 177

Query: 410 PDLVSVVTFR----GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS---------- 455
           P                +           +    +S D  + +    D            
Sbjct: 178 PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237

Query: 456 -----CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIW 510
                           V    F  R   + + G+DG++  W ++T + I  + K  ++  
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDS 296

Query: 511 ALAVGKKTEMFATGGSDALVNLW 533
            + +     +     SD      
Sbjct: 297 VVKIACSDNILCLATSDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.6 bits (176), Expect = 3e-14
 Identities = 47/332 (14%), Positives = 98/332 (29%), Gaps = 35/332 (10%)

Query: 200 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 259
           PS   LL  + D  L +Y   ++  K ++L    + + Y   +L   F+   +  + V T
Sbjct: 21  PSKSLLLITSWDGSLTVYK-FDIQAKNVDL---LQSLRYKHPLLCCNFIDNTDLQIYVGT 76

Query: 260 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 319
              ++   DL        L  +   +     C     K++  +      V    +     
Sbjct: 77  VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGV 136

Query: 320 VGVG---TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 376
           + V    + +      +       + L+ G ++  ++ +      DD             
Sbjct: 137 IAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE------S 190

Query: 377 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT---------------FRGH 421
               +  +   +          S D    V    D                         
Sbjct: 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250

Query: 422 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-GHTSSVLRASFLTRGAQIV 480
              + S+EFSP  + + TA  D  I  W++     +K F   +  SV++ +       + 
Sbjct: 251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIAC--SDNILC 308

Query: 481 SCGADGLVKLWTVRTGECIATYDKHEDKIWAL 512
              +D   K           T + +   I+ +
Sbjct: 309 LATSDDTFKTN----AAIDQTIELNASSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 4e-10
 Identities = 20/114 (17%), Positives = 32/114 (28%), Gaps = 18/114 (15%)

Query: 7   GADRKVLVWDVDGGF---------------CTHYFKGHKGVVSSILFHPDTDKSLLFSGS 51
             D +V V   D                             V+SI F P      L++  
Sbjct: 213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK--FLYTAG 270

Query: 52  DDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 105
            D  +  W+L  +K +    K  +  + + I    + L  A  D         D
Sbjct: 271 SDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAID 323

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 7/80 (8%)

Query: 1   MFALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 60
            F    G+D  +  W++        F       S +      +  +L   + D T +   
Sbjct: 264 KFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDN--ILCLATSDDTFKTN- 319

Query: 61  LLAKKCVATLDKHFSRVTSM 80
                   T++ + S +  +
Sbjct: 320 ---AAIDQTIELNASSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 5/82 (6%), Positives = 23/82 (28%), Gaps = 3/82 (3%)

Query: 456 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY---DKHEDKIWAL 512
            ++  +     +     +   + ++    DG + ++               +++  +   
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62

Query: 513 AVGKKTEMFATGGSDALVNLWH 534
                T++    G+     L  
Sbjct: 63  NFIDNTDLQIYVGTVQGEILKV 84

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 5e-05
 Identities = 35/319 (10%), Positives = 86/319 (26%), Gaps = 40/319 (12%)

Query: 7   GADRKVLVWDVDGGFCTHYFK---GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA 63
             D  + V+  D             +K  +    F  +TD  +         ++V  + +
Sbjct: 30  SWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS 89

Query: 64  KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCA 123
               A  +   +             LI+A  D ++ + D R+Y   +             
Sbjct: 90  PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS----- 144

Query: 124 IPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS 183
                      ++   +       +     I       V+ +             D    
Sbjct: 145 -----------NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFR------LPLCEDDNGTI 187

Query: 184 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY-----TTVEVPEKKMELILSK---RL 235
            E     +    A +    +G  C + D ++ +             K+      +   + 
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247

Query: 236 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALS- 294
                 +  ++F     ++L  A +   +  ++L +       A  +E         ++ 
Sbjct: 248 TNLAYPVNSIEF-SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS----VVKIAC 302

Query: 295 SGKILIVTGSKDNSVRLWD 313
           S  IL    + D++ +   
Sbjct: 303 SDNIL-CLATSDDTFKTNA 320

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 80.7 bits (197), Expect = 4e-17
 Identities = 44/292 (15%), Positives = 89/292 (30%), Gaps = 22/292 (7%)

Query: 253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 312
             +        V    + S++ + +   HS           S       +G    +VR+W
Sbjct: 30  DKIQYCNG-TSVYTVPVGSLTDTEIYTEHSHQTTV---AKTSPSGYYCASGDVHGNVRIW 85

Query: 313 --DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 370
                +           G V  +++  + +     G                        
Sbjct: 86  DTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG- 144

Query: 371 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEF 430
                        +          + +GS D T  ++  P      TF  H + + SV +
Sbjct: 145 -------QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 197

Query: 431 SPVDQVVITASGDKTIKIWSISDGSCLKT-------FEGHTSSVLRASFLTRGAQIVSCG 483
           +P   +  +  GD TI +++  DG+              H+ SV   ++   G +I S  
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 257

Query: 484 ADGLVKLWTVRTGECIATYDKHED-KIWALAVGKKTEMFATGGSDALVNLWH 534
           AD  +K+W V T +   T       +   L +    +   +  ++  +N  +
Sbjct: 258 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 75.7 bits (184), Expect = 2e-15
 Identities = 37/332 (11%), Positives = 84/332 (25%), Gaps = 40/332 (12%)

Query: 30  KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTL 89
           +G    +   P  DK  +   +   +V    + +        +H  + T    +  G   
Sbjct: 17  RGTAVVLGNTPAGDK--IQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYC 73

Query: 90  ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL 149
            S      V +WD    +         +++    +  G   D    S +++         
Sbjct: 74  ASGDVHGNVRIWDTTQTTH--------ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE 125

Query: 150 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVT 209
               + + + G         A          +  F +       T A             
Sbjct: 126 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF 185

Query: 210 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 269
            +    +++    P+  +               +D    G  E                 
Sbjct: 186 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 245

Query: 270 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG---VGTGH 326
            S   + + +                        S D ++++W+  +        VGT  
Sbjct: 246 WSPDGTKIASA-----------------------SADKTIKIWNVATLKVEKTIPVGTRI 282

Query: 327 MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 358
                 + ++K     LVS S++  I   + +
Sbjct: 283 EDQQLGIIWTK---QALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.8 bits (135), Expect = 3e-09
 Identities = 11/83 (13%), Positives = 25/83 (30%), Gaps = 2/83 (2%)

Query: 417 TFRGHKRGIW-SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 475
           +     RG    +  +P    +   +G  ++    +   +  + +  H+     A     
Sbjct: 11  SLPRTARGTAVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS 69

Query: 476 GAQIVSCGADGLVKLWTVRTGEC 498
           G    S    G V++W       
Sbjct: 70  GYYCASGDVHGNVRIWDTTQTTH 92

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 1/72 (1%)

Query: 385 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK 444
            L   P    +   +   +     +  L     +  H       + SP      +     
Sbjct: 22  VLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHG 80

Query: 445 TIKIWSISDGSC 456
            ++IW  +  + 
Sbjct: 81  NVRIWDTTQTTH 92

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.8 bits (127), Expect = 3e-08
 Identities = 38/249 (15%), Positives = 71/249 (28%), Gaps = 15/249 (6%)

Query: 296 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 355
           G  +        SV      S     + T H         S     +  SG     +++W
Sbjct: 29  GDKIQYCN--GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIW 85

Query: 356 SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV 415
                       +      V +   KDI+  + +   + V  G +             + 
Sbjct: 86  DTTQ-----TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG 140

Query: 416 VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 475
                 +              +I+ S D T+ I+         TF  HT  V    +   
Sbjct: 141 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD 200

Query: 476 GAQIVSCGADGLVKLWTVRTGECIATYDKHE-------DKIWALAVGKKTEMFATGGSDA 528
           G+   S G DG + L+    G     ++            ++ L         A+  +D 
Sbjct: 201 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK 260

Query: 529 LVNLWHDST 537
            + +W+ +T
Sbjct: 261 TIKIWNVAT 269

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.6 bits (124), Expect = 7e-08
 Identities = 10/56 (17%), Positives = 14/56 (25%), Gaps = 2/56 (3%)

Query: 4  LLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 59
          +       V    V     T  +  H    +     P        SG     VR+W
Sbjct: 32 IQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIW 85

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 8/56 (14%), Positives = 16/56 (28%), Gaps = 3/56 (5%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSIL-FHPDTDKSLLFSGSDDATVRVWDL 61
            AD+ + +W+V              +    L          L S S +  +   + 
Sbjct: 257 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ--ALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.2 bits (97), Expect = 2e-04
 Identities = 12/88 (13%), Positives = 21/88 (23%), Gaps = 2/88 (2%)

Query: 450 SISDGSCLKTFEGHTSSVLRA-SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 508
             S  +   +                 G +I  C     V    V +      Y +H  +
Sbjct: 2   EFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQ 60

Query: 509 IWALAVGKKTEMFATGGSDALVNLWHDS 536
                        A+G     V +W  +
Sbjct: 61  TTVAKTSPSGYYCASGDVHGNVRIWDTT 88

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 79.9 bits (195), Expect = 1e-16
 Identities = 25/369 (6%), Positives = 89/369 (24%), Gaps = 36/369 (9%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD-ATVRVWDLLAKK 65
            +  +  + DV G +           +  +    D  K     G+ +   + ++D     
Sbjct: 21  VSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYD-YRTG 76

Query: 66  CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP 125
                +++   V +M +  +                 + +   ++     E  +      
Sbjct: 77  KAEKFEENLGNVFAMGVDRN------------GKFAVVANDRFEIMTVDLETGKPTVIER 124

Query: 126 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE 185
              A  +  +  +          L+           + +++ +   ++   + +      
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP 184

Query: 186 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 245
             D             ++ L  ++          V +      +     +          
Sbjct: 185 AFD-----------ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPT 233

Query: 246 KFLGEEEQYLAVA---TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVT 302
           K +       A      ++ +             ++      +L                
Sbjct: 234 KLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQG 293

Query: 303 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD 362
             +   +  +D ++R      T     +  +  S   +  ++    D  I  +  +   D
Sbjct: 294 APEKGVLLKYDVKTRKV----TEVKNNLTDLRLSAD-RKTVMVRKDDGKIYTFPLEKPED 348

Query: 363 DAEQPMNLK 371
           +     + +
Sbjct: 349 ERTVETDKR 357

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 79.1 bits (193), Expect = 2e-16
 Identities = 18/213 (8%), Positives = 43/213 (20%), Gaps = 16/213 (7%)

Query: 304 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 363
               ++ ++D E R      T +         +      L   S            L+  
Sbjct: 156 YVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD--SKNLYYLSYRSLDPSPDRVVLNFS 213

Query: 364 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT-------ACVWRLPDLVSVV 416
            E          +       N   + P       G  D                D   ++
Sbjct: 214 FEVVSKPFV---IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMII 270

Query: 417 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 476
                                  A     +  + +             +++         
Sbjct: 271 PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADR 326

Query: 477 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKI 509
             ++    DG +  + +   E   T +  +  +
Sbjct: 327 KTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 71.4 bits (173), Expect = 9e-14
 Identities = 11/173 (6%), Positives = 38/173 (21%), Gaps = 7/173 (4%)

Query: 299 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 358
            +   S  +     D                +  +  S      +    +    +    D
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251

Query: 359 GLSDDAEQPM---NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV 415
                +   +   + +    + +     +        +      +      + +      
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR--- 308

Query: 416 VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL 468
                 K  +  +  S   + V+    D  I  + +      +T E     ++
Sbjct: 309 -KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPLV 360

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 12/158 (7%), Positives = 28/158 (17%), Gaps = 18/158 (11%)

Query: 390 PNDSLVCTGSQDRTACVWRLPDLV-------SVVTFRGHKRGIWSVEFSPVDQVVITASG 442
            +   +   S            L                       +  P          
Sbjct: 188 ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY 247

Query: 443 DKTIKIW-------SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 495
           D                D   +   E               A        G++  + V+T
Sbjct: 248 DLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT 307

Query: 496 GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
            +        ++ +  L +    +       D  +  +
Sbjct: 308 RKVTE----VKNNLTDLRLSADRKTVMVRKDDGKIYTF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 51.8 bits (122), Expect = 2e-07
 Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 6/71 (8%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
                +L +DV     T      K  ++ +    D  +  +    DD  +  + L   + 
Sbjct: 295 PEKGVLLKYDVKTRKVT----EVKNNLTDLRLSAD--RKTVMVRKDDGKIYTFPLEKPED 348

Query: 67  VATLDKHFSRV 77
             T++     +
Sbjct: 349 ERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.2 bits (110), Expect = 4e-06
 Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 426 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD 485
           ++ +FSP+D  +I         I  +S    LK        +               G  
Sbjct: 6   FAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTR 63

Query: 486 G--LVKLWTVRTGECIATYDKHEDKIWALA 513
               + ++  RTG+    ++++   ++A+ 
Sbjct: 64  EGDFLGIYDYRTGK-AEKFEENLGNVFAMG 92

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.5 bits (194), Expect = 3e-16
 Identities = 44/418 (10%), Positives = 101/418 (24%), Gaps = 64/418 (15%)

Query: 22  CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSR----- 76
             +  K H   + S+            S S D  ++VWD          DK +S      
Sbjct: 6   TANAGKAHDADIFSVSACNSF----TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 77  --------VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGS 128
                           +   + +      +  + +        V   ++      +   S
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 121

Query: 129 AFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS------ACLYEQKSSDVTI 182
            +     + N + +           +    +G   +W          +       +    
Sbjct: 122 FWALKWGASNDRLLSH-------RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ 174

Query: 183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEI 242
                       A +V  S +GL+    +   +  + +              ++  +  I
Sbjct: 175 GTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234

Query: 243 LDLKFLGEEEQYLAVATN--IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKIL- 299
             +KF  +         +     + +Y+         L+  +            S  ++ 
Sbjct: 235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS 294

Query: 300 ---------IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH 350
                    + +   D  +R WD +++  +     H   +               G S  
Sbjct: 295 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILA---VDEHGDSLA 351

Query: 351 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 408
              V+                    V    K   S   A  +  +C    DR+   +R
Sbjct: 352 EPGVFD-------------------VKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.0 bits (190), Expect = 8e-16
 Identities = 38/394 (9%), Positives = 106/394 (26%), Gaps = 76/394 (19%)

Query: 198 VLPSNQGLLCVTADQQLLLY-----TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE 252
           V   N   +  + D  L ++           +K     + K  + + + +  ++    E 
Sbjct: 20  VSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL 79

Query: 253 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVL------------CLDTCALSSGKILI 300
             +A  +    +  Y ++    +  +      +L                         +
Sbjct: 80  CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL 139

Query: 301 VTGSKDNSVRLWD------------------SESRCCVGVGTGHMGAVGAVAFSKKLQNF 342
           V      +  +W                    E +  V           +V  S++    
Sbjct: 140 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--GL 197

Query: 343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR 402
           + +G ++ T+++              N +++  +  +   I S+  +P  SL+       
Sbjct: 198 IATGFNNGTVQISELS----TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN 253

Query: 403 TACVWRLPD----------------LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI 446
           +     L +                  + +    H   + S+ F+   + + +A  D  +
Sbjct: 254 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 313

Query: 447 KIWSISDGSCLKTFEGHTSSVLRA----SFLTRGAQIVSCGADGLVKLWTVRTGECIATY 502
           + W +     + T   H   +       +    G  +   G      ++ V+        
Sbjct: 314 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFDVK-------- 359

Query: 503 DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 536
              +    +       E       D  +  + ++
Sbjct: 360 -FLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 392

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.7 bits (166), Expect = 7e-13
 Identities = 19/149 (12%), Positives = 37/149 (24%), Gaps = 30/149 (20%)

Query: 414 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE------GHTSSV 467
           +    + H   I+SV         ++ SGD  +K+W           +       H S +
Sbjct: 6   TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63

Query: 468 LRASFL-------TRGAQIVSCGADGLVKLWTVRTGECIATY----------DKHEDKIW 510
                L            + +    G +  + +   +               D  +   W
Sbjct: 64  HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 511 ALAVGK-----KTEMFATGGSDALVNLWH 534
           AL  G       +             +W 
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWK 152

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.1 bits (154), Expect = 2e-11
 Identities = 37/385 (9%), Positives = 91/385 (23%), Gaps = 54/385 (14%)

Query: 7   GADRKVLVWDVDGG-----------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT 55
             D  + VWD                  H    H   V   +     +  L+ + S    
Sbjct: 31  SGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGD 90

Query: 56  VRVWDLLAKKCVATL----------DKHFSRVTSMAITSDG-----STLISAGRDKVVNL 100
           +  + +  +     +          D       ++   +         L++        +
Sbjct: 91  LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI 150

Query: 101 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 160
           W    ++ +    T      +       +  +         I ++         T    G
Sbjct: 151 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL-----IATGFNNG 205

Query: 161 IVRMWNADSACLYEQKSSDVTISFEMDD------SKRGFTAATVLPSNQGLLCVTADQQL 214
            V++    +        S  ++    +       S +G   A    SN        + + 
Sbjct: 206 TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF 265

Query: 215 LLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC 274
                            S     ++  ++ L F    E   +   +  +++ +D+ +   
Sbjct: 266 GERIGSL-SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD-GKLRFWDVKTKER 323

Query: 275 SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 334
              L  H + +   +           +       V+      R  +G             
Sbjct: 324 ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES------- 376

Query: 335 FSKKLQNFLVSGSSDHTIKVWSFDG 359
                   L     D +I+ +   G
Sbjct: 377 --------LCCVCLDRSIRWFREAG 393

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.1 bits (154), Expect = 2e-11
 Identities = 27/203 (13%), Positives = 56/203 (27%), Gaps = 49/203 (24%)

Query: 378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRL------PDLVSVVTFRGHKRGIWSVEFS 431
           AH  DI S++   +     + S D    VW               +   HK G+  V+  
Sbjct: 12  AHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 432 PV-------DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA------- 477
                      +V T S    +  + I+     K        +L +              
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 478 --------QIVSCGADGLVKLW------------------TVRTGECIATYDKHEDKIWA 511
                   ++V+    G   +W                  T+     + +         +
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 512 LAVGKKTEMFATGGSDALVNLWH 534
           + + ++  + ATG ++  V +  
Sbjct: 190 VDISERG-LIATGFNNGTVQISE 211

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 77.3 bits (188), Expect = 5e-16
 Identities = 42/296 (14%), Positives = 87/296 (29%), Gaps = 6/296 (2%)

Query: 65  KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC-A 123
                   H   +T+++ ++DG TL SA  +  +N WD+         P           
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 124 IPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS 183
                   +     + + +      ++       +     +  A SA      ++     
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 184 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEIL 243
                 K      +   S   L        +    +     K     +S+     +   +
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 244 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 303
                     +L       +V  Y +++          +     +   + S   + + TG
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242

Query: 304 SKDNSVRLWDSES---RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356
           S DNSV +W+         +  G   M +V +V +    +  +VS   D  IK W+
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN--ETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 75.0 bits (182), Expect = 3e-15
 Identities = 30/300 (10%), Positives = 87/300 (29%), Gaps = 11/300 (3%)

Query: 20  GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVT 78
           G       GH   ++++    D     LFS   +  +  WD+          D H + +T
Sbjct: 2   GSIDQVRYGHNKAITALSSSAD--GKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT 59

Query: 79  SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN 138
            +  TS    L +   D  + +          +      + +       SA      +  
Sbjct: 60  GIKTTSK-GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 118

Query: 139 QQTIKKKRRSLEI-----HFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGF 193
            + I              +  +       + + A      +     ++ +   +      
Sbjct: 119 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH 178

Query: 194 TAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 253
            A     +                          EL  +     +  ++  + +  +  +
Sbjct: 179 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 238

Query: 254 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 313
               + +   V V++++  S   ++   +  +  +++    +    IV+  +D++++ W+
Sbjct: 239 LATGSLD-NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 71.6 bits (173), Expect = 4e-14
 Identities = 33/298 (11%), Positives = 71/298 (23%), Gaps = 42/298 (14%)

Query: 273 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV-GTGHMGAVG 331
           S   V  GH++ +  L   + S+    + +   +  +  WD  +     V    H   + 
Sbjct: 3   SIDQVRYGHNKAITAL---SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT 59

Query: 332 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 391
            +  +   +  L + S D  +KV    G   D+ + +  K  +         +       
Sbjct: 60  GIKTTS--KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA 117

Query: 392 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 451
                            +    S V     K+ +          V   +    +     +
Sbjct: 118 CYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV 177

Query: 452 SDGSCLKTFEGHTSSVLRASFLTRGAQI-------------------------------- 479
                      +  + L A+  +R                                    
Sbjct: 178 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 237

Query: 480 --VSCGADGLVKLWTVRTGEC--IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 533
              +   D  V +W +       I     H        +        + G D+ +  W
Sbjct: 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 65.8 bits (158), Expect = 3e-12
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 1/85 (1%)

Query: 454 GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY-DKHEDKIWAL 512
           GS  +   GH  ++   S    G  + S  A+G +  W + TG     + D H   I  +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 513 AVGKKTEMFATGGSDALVNLWHDST 537
               K ++F     D L  +    +
Sbjct: 62  KTTSKGDLFTVSWDDHLKVVPAGGS 86

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 65.8 bits (158), Expect = 4e-12
 Identities = 41/299 (13%), Positives = 87/299 (29%), Gaps = 41/299 (13%)

Query: 231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-GHSEIVLCLD 289
           + +   G+N+ I  L     + + L  A     +  +D+S+   + V    H+ ++  + 
Sbjct: 4   IDQVRYGHNKAITALSS-SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 290 TCALSSGKILIVTGSKDNSVRLWD---SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG 346
           T      K  + T S D+ +++     S       V          +A S      + + 
Sbjct: 63  TT----SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 118

Query: 347 SS---------------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 391
                             +     +                  V    G  ++ +    +
Sbjct: 119 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH 178

Query: 392 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS---------------VEFSPVDQV 436
            + + + +           D    V                          V +SP +  
Sbjct: 179 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 238

Query: 437 VITASGDKTIKIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 493
           + T S D ++ +W+++  S   +     H  S + +        IVS G D  +K W V
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 57.7 bits (137), Expect = 2e-09
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 2/93 (2%)

Query: 13  LVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL--LAKKCVATL 70
                +     H                  D   L +GS D +V VW++   +   +   
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264

Query: 71  DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 103
             H     +  I  + +T++SAG+D  +  W++
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.9 bits (135), Expect = 3e-09
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 390 PNDSLVCTGSQDRTACVWRL--PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIK 447
           P++  + TGS D +  VW +  P    ++    H     +      +  +++A  D  IK
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293

Query: 448 IWSIS 452
            W++ 
Sbjct: 294 FWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.9 bits (122), Expect = 1e-07
 Identities = 9/58 (15%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 7   GADRKVLVWDVDGGFC---THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 61
             D  V+VW+++                 V+S+++  +   + + S   D+ ++ W++
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE---TTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.9 bits (109), Expect = 5e-06
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 340 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS 399
              L +GS D+++ VW+ +  SD            +  AH     +  +  N++ + +  
Sbjct: 236 NVRLATGSLDNSVIVWNMNKPSD--------HPIIIKGAHAMSSVNSVIWLNETTIVSAG 287

Query: 400 QDRTACVWRLP 410
           QD     W +P
Sbjct: 288 QDSNIKFWNVP 298

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.8 bits (179), Expect = 7e-15
 Identities = 33/336 (9%), Positives = 81/336 (24%), Gaps = 56/336 (16%)

Query: 22  CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 81
                 GH   ++++  +P      L SGS D  +  W        +    H + + S+ 
Sbjct: 5   VLKTISGHNKGITALTVNP------LISGSYDGRIMEWSS-----SSMHQDHSNLIVSLD 53

Query: 82  ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT 141
            +        +  D +      +              +   A+      D  L      T
Sbjct: 54  NSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAV---LTNDDDLLILQSFT 110

Query: 142 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPS 201
               +        +        +          Q      +    D         + +  
Sbjct: 111 GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISI 170

Query: 202 NQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI 261
           +     + A   +      ++  +++                                  
Sbjct: 171 SPSETYIAAGDVMGKILLYDLQSREV--------------------------------KT 198

Query: 262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD-SESRCCV 320
            +         + S+  A        ++   +++G       S D ++ ++        +
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG-------SLDTNIFIYSVKRPMKII 251

Query: 321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356
                H   V  + +     + LVS  +D  IK W+
Sbjct: 252 KALNAHKDGVNNLLWET--PSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.3 bits (162), Expect = 8e-13
 Identities = 31/291 (10%), Positives = 76/291 (26%), Gaps = 46/291 (15%)

Query: 277 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS 336
            ++GH++ +  L    L       ++GS D  +  W S S     +   H   + ++  S
Sbjct: 8   TISGHNKGITALTVNPL-------ISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNS 55

Query: 337 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 396
           K  +   +S      +   +        +                D   +  +    ++ 
Sbjct: 56  KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115

Query: 397 TGSQDRTACVWRLPD---------------------LVSVVTFRGHKRGIWSVEFSP--- 432
           +   +       L                        VS       +     +  SP   
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175

Query: 433 --------VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 484
                      ++      +          S +       +             + +   
Sbjct: 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235

Query: 485 DGLVKLWTVRT-GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 534
           D  + +++V+   + I   + H+D +  L          + G+DA +  W+
Sbjct: 236 DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.6 bits (155), Expect = 8e-12
 Identities = 16/141 (11%), Positives = 43/141 (30%), Gaps = 2/141 (1%)

Query: 312 WDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 371
             S+      + T        ++ S               +           +       
Sbjct: 147 KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTS 206

Query: 372 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV-TFRGHKRGIWSVEF 430
               ++    +  +      + LV TGS D    ++ +   + ++     HK G+ ++ +
Sbjct: 207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW 266

Query: 431 SPVDQVVITASGDKTIKIWSI 451
                 ++++  D  IK W++
Sbjct: 267 ET-PSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.9 bits (148), Expect = 5e-11
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 421 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLRASFLTRGAQI 479
                 + E    + +V T S D  I I+S+      +K    H   V    + T    +
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TL 272

Query: 480 VSCGADGLVKLWTV 493
           VS GAD  +K W V
Sbjct: 273 VSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.4 bits (144), Expect = 2e-10
 Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 2/89 (2%)

Query: 15  WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-AKKCVATLDKH 73
                   +                 + ++ L+ +GS D  + ++ +    K +  L+ H
Sbjct: 198 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH 257

Query: 74  FSRVTSMAITSDGSTLISAGRDKVVNLWD 102
              V ++   +   TL+S+G D  +  W+
Sbjct: 258 KDGVNNLLWETPS-TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.8 bits (140), Expect = 5e-10
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 7   GADRKVLVWDV-DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 62
             D  + ++ V            HK  V+++L+      S L S   DA ++ W+++
Sbjct: 234 SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP---STLVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 9/66 (13%)

Query: 456 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVG 515
            LKT  GH   +   +       ++S   DG +  W+  +         H + I +L   
Sbjct: 5   VLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNS 55

Query: 516 KKTEMF 521
           K  E  
Sbjct: 56  KAQEYS 61

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 72.5 bits (176), Expect = 3e-14
 Identities = 33/324 (10%), Positives = 74/324 (22%), Gaps = 19/324 (5%)

Query: 41  DTDKSLLFSGSDDATVRVWDLLAKKCVATLD-KHFSRVTSMAITSDGSTL-ISAGRDKVV 98
                 +   +    + V D+ +     +          +  +  D  T  +       +
Sbjct: 5   KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI 64

Query: 99  NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE 158
              DL             +   V       A         +                V  
Sbjct: 65  YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPD---GKEVYATVNPTQRLNDHYVVKP 121

Query: 159 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYT 218
             +     AD       ++  +     +  +    +       +   + V   +  +   
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA-GPDIYKMDVKTGKYTVALP 180

Query: 219 TVEVPEKKMELILSKRLVGYNE------EILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 272
                 K            +         +  +    +++Q  A A  +      DL + 
Sbjct: 181 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG 240

Query: 273 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG-VGTGHMGAVG 331
                            T   S      + G   N +  +D + R  +      H     
Sbjct: 241 KTHTQEFADLTE--LYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDH--TYY 295

Query: 332 AVAFSKKLQNFLVSGSSDHTIKVW 355
            VAF KK  + L  G + + + V+
Sbjct: 296 CVAFDKK-GDKLYLGGTFNDLAVF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 60.1 bits (144), Expect = 3e-10
 Identities = 36/398 (9%), Positives = 91/398 (22%), Gaps = 55/398 (13%)

Query: 80  MAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQ 139
            A+ +    +I       +++ D+   +          V   C +P      + + + + 
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDT----------VYKSCVMPDKFGPGTAMMAPDN 51

Query: 140 QTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVL 199
           +T           ++     G +   + D+            +S    +  R   +  + 
Sbjct: 52  RTA----------YVLNNHYGDIYGIDLDTCKNTFH----ANLSSVPGEVGRSMYSFAIS 97

Query: 200 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 259
           P     +  T +    L     V   ++E+  +        E   ++      Q   +  
Sbjct: 98  PDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTAD----GLEAKPVRTFPMPRQVYLMRA 152

Query: 260 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 319
             +         +    V  G   + L L               S  + +  W  +S   
Sbjct: 153 ADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRK-------GYSAPDVLYFWPHQSPRH 205

Query: 320 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 379
                  +                 +    +                          A  
Sbjct: 206 EFSMLYTIARFKDDKQD------PATADLLYGYLSVDLK---------TGKTHTQEFADL 250

Query: 380 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVIT 439
            +   +   +P D     G  +     + L     +          + V F      +  
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYL 308

Query: 440 ASGDKTIKIWSISDGSCLKTFE--GHTSSVLRASFLTR 475
                 + +++      +K  +  G   S        R
Sbjct: 309 GGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTPQVFIR 346

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 59.0 bits (141), Expect = 8e-10
 Identities = 11/107 (10%), Positives = 28/107 (26%), Gaps = 3/107 (2%)

Query: 8   ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
                L  D+  G            +         D + ++   +   +  +DL  +K +
Sbjct: 228 LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN--RLAKYDLKQRKLI 285

Query: 68  ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 114
              +        +A    G  L   G    + +++         +  
Sbjct: 286 KAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 55.9 bits (133), Expect = 8e-09
 Identities = 16/224 (7%), Positives = 44/224 (19%), Gaps = 16/224 (7%)

Query: 294 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI- 352
            + ++      K   + ++ +                            L     D    
Sbjct: 109 PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKM 168

Query: 353 ------KVWSFDGLSDDAEQPMNLKAKAVVAAHGKD------INSLAVAPNDSLVCTGSQ 400
                    +    + + +                               +     T   
Sbjct: 169 DVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 228

Query: 401 DRTACVWRLP-DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 459
                   L         F       ++   SP D   I    +  +  + +     +K 
Sbjct: 229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKA 287

Query: 460 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 503
                 +    +F  +G ++   G    + ++   T E +    
Sbjct: 288 AN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 71.7 bits (174), Expect = 6e-14
 Identities = 43/355 (12%), Positives = 95/355 (26%), Gaps = 35/355 (9%)

Query: 49  SGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAG----------RDKVV 98
             +      V D  A + +  +D  F  + +  +  DGS +  A           R   V
Sbjct: 23  HFAAVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYV 80

Query: 99  NLWDLRDYSCKLTVPT-YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG 157
            ++D         +         V   P  ++              +   +  +  + + 
Sbjct: 81  EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD---GKTLLFYQFSPAPAVGVVDLE 137

Query: 158 ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 217
            +   RM +          + D       D S       T          V   +   L 
Sbjct: 138 GKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLI 197

Query: 218 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV 277
                 +K   L+       Y  +I  +     + ++L     + + +  D         
Sbjct: 198 NHPAYSQKAGRLV----WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ 253

Query: 278 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 337
           +A H  +        L   +      +    V + D+++   +         + ++  S+
Sbjct: 254 VAYHRALDRI---YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQ 309

Query: 338 KLQNFL-VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 391
             +  L    + D T+ +        DAE   + +    V   G     +  A  
Sbjct: 310 DEKPLLYALSTGDKTLYIH-------DAE---SGEELRSVNQLGHGPQVITTADM 354

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 64.0 bits (154), Expect = 2e-11
 Identities = 26/185 (14%), Positives = 49/185 (26%), Gaps = 21/185 (11%)

Query: 296 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 355
           G +  V    + +  +  +E              +   A+S+K    LV  +    I   
Sbjct: 168 GSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQK-AGRLVWPTYTGKIHQI 221

Query: 356 SFDGLSDDAEQPMNLKAKAV------------VAAHGKDINSLAVAPNDSLVCTGSQDRT 403
                       +    +A             VA H        +          +  R 
Sbjct: 222 DLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF 281

Query: 404 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFE 461
             V        +  F      I S+  S  ++  +   ++GDKT+ I     G  L++  
Sbjct: 282 VVVLDAKTGERLAKFEMGHE-IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 340

Query: 462 GHTSS 466
                
Sbjct: 341 QLGHG 345

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 61.0 bits (146), Expect = 2e-10
 Identities = 26/280 (9%), Positives = 65/280 (23%), Gaps = 37/280 (13%)

Query: 264 VQVYDLSSMSCSYVLAGHSEIVLCL----DTCALS--SGKILIVTGSKDNSVRLWDSESR 317
           V+V+D  ++  +  +         +       +L+     +L    S   +V + D E +
Sbjct: 80  VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 139

Query: 318 CCV-------GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 370
                                     +      V+  ++ T ++                
Sbjct: 140 AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT------HTEVFHPED 193

Query: 371 KAKAVVAAHGKDINSLAVAPNDSLVC---------------TGSQDRTACVWRLPDLVSV 415
           +      A+ +    L        +                    +        P     
Sbjct: 194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ 253

Query: 416 VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-GHTSSVLRASFLT 474
           V    H+                  +  + + +     G  L  FE GH    +  S   
Sbjct: 254 VA--YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDE 311

Query: 475 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV 514
           +         D  + +    +GE + + ++       +  
Sbjct: 312 KPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITT 351

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 57.5 bits (137), Expect = 2e-09
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 1/80 (1%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 66
            A R V+V D   G     F+    +  SI    D    L    + D T+ + D  + + 
Sbjct: 277 TASRFVVVLDAKTGERLAKFEMGHEI-DSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 335

Query: 67  VATLDKHFSRVTSMAITSDG 86
           + ++++       +     G
Sbjct: 336 LRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.8 bits (86), Expect = 0.004
 Identities = 13/108 (12%), Positives = 29/108 (26%), Gaps = 10/108 (9%)

Query: 439 TASGDKTIKIWSISDGSCLKTFEGHTSSVLRAS----FL----TRGAQIVSCGADGLVKL 490
             +      +     G  +   +G        +    F+    T  ++I        V++
Sbjct: 23  HFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEV 82

Query: 491 WTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 538
           +   T    A  +  +       VG    M +       +  +  S A
Sbjct: 83  FDPVTLLPTADIELPDA--PRFLVGTYPWMTSLTPDGKTLLFYQFSPA 128

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.3 bits (170), Expect = 1e-13
 Identities = 39/302 (12%), Positives = 82/302 (27%), Gaps = 29/302 (9%)

Query: 253 QYLAVATNIEQVQVYDL----SSMSCSYVLAGH-SEIVLCLDTCALSSGKILIVTGSKDN 307
             +A     +   V  L    S +       GH S +V  +    +   +  + +G +  
Sbjct: 30  NAIAYPCG-KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESG 87

Query: 308 SVRLWDSESRCCV--------GVGTGHMGAVGAVAFSKK-LQNFLVSGSSDHTIKVWSFD 358
            V +W                       G +  +++  +  +  +V    D+     S+D
Sbjct: 88  KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD 147

Query: 359 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 418
             +   E   + +                       V                  S  T 
Sbjct: 148 SGNSLGEVSGHSQRINACHLKQSRPMRSMT------VGDDGSVVFYQGPPFKFSASDRTH 201

Query: 419 RGHKRGIWSVEFSP----VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT 474
                 +  VEFSP        V +          S      ++  +      + A    
Sbjct: 202 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL 261

Query: 475 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVG---KKTEMFATGGSDALVN 531
              +  + GAD  +++W V T +C+  +   + ++    VG          +   D  +N
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 532 LW 533
            +
Sbjct: 322 FY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.0 bits (164), Expect = 8e-13
 Identities = 36/313 (11%), Positives = 82/313 (26%), Gaps = 32/313 (10%)

Query: 29  HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSR-VTSMAI--T 83
            +   + + + P T+  + +     A VR  D    K   V     H S  VT++     
Sbjct: 16  QRNFTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI 74

Query: 84  SDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE---------MVEAVCAIPPGS------ 128
                L S      V +W         +V              +  +     G       
Sbjct: 75  KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 134

Query: 129 --------AFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV 180
                          +   +     +R    H         + + +  S   Y+      
Sbjct: 135 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF 194

Query: 181 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 240
           + S      +  F        + G   +T      +        + ++ I   +      
Sbjct: 195 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG 254

Query: 241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILI 300
                       Q  A       ++V+D+++  C        + +       +++G   I
Sbjct: 255 IFALSWLDS---QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 311

Query: 301 VTGSKDNSVRLWD 313
           ++ S D ++  ++
Sbjct: 312 ISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.2 bits (141), Expect = 5e-10
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 15  WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF 74
               G F  +     + V   I      D     +   DAT+RVWD+   KCV       
Sbjct: 234 DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK 293

Query: 75  SRVTSMAIT---SDGSTLISAGRDKVVNLWDL 103
            ++ +  +    +    +IS   D  +N ++L
Sbjct: 294 QQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.8 bits (127), Expect = 4e-08
 Identities = 46/284 (16%), Positives = 76/284 (26%), Gaps = 18/284 (6%)

Query: 270 SSMSCSYVLAGHSEIVLCLDTCALSS--GKILIVTGSKDNSVRLWDSESRC--CVGVGTG 325
           SS+S   ++           T          +     K   VR  D        V   TG
Sbjct: 1   SSISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG 60

Query: 326 HMG-AVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 383
           H    V  V FS      +L SG     + VW +    D     + +  K+        I
Sbjct: 61  HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT--FDKESNSVEVNVKSEFQVLAGPI 118

Query: 384 NSLAVAPNDS--LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 441
           + ++         V    +D            S+    GH + I +        +     
Sbjct: 119 SDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV 178

Query: 442 GDKTIK----IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW----TV 493
           GD               +  +T     S V    F     + V               + 
Sbjct: 179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 238

Query: 494 RTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 537
              + I    +             ++ FAT G+DA + +W  +T
Sbjct: 239 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT 282

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 5e-08
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHKGVVS--SILFHPDTDKSLLFSGSDDATVRVWDL 61
           GAD  + VWDV    C   +   K  +    +      +   + S S D T+  ++L
Sbjct: 270 GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDGTLNFYEL 325

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 65.4 bits (158), Expect = 7e-12
 Identities = 19/265 (7%), Positives = 54/265 (20%), Gaps = 33/265 (12%)

Query: 264 VQVYDLSSMSCSYVLAGHSEIVLCLDT-----CALSSGKILIVTGSKDNSVRLWDSESRC 318
           V+V+D  +      +         +          +S   L+      ++          
Sbjct: 98  VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS 157

Query: 319 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 378
              +                       GS   ++           A     +       A
Sbjct: 158 DDQLTKSA----SCFHIHPGAAATHYLGSCPASLAASD----LAAAPAAAGIVGAQCTGA 209

Query: 379 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI 438
                 +        LV   +                    G++ G  +  F      ++
Sbjct: 210 QNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV 269

Query: 439 TASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQI------------------- 479
               +    +    + S         +S + AS       I                   
Sbjct: 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN 329

Query: 480 -VSCGADGLVKLWTVRTGECIATYD 503
             +     ++ ++   + +  ++ +
Sbjct: 330 YANSAGTEVLDIYDAASDQDQSSVE 354

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.3 bits (124), Expect = 1e-07
 Identities = 21/229 (9%), Positives = 52/229 (22%), Gaps = 22/229 (9%)

Query: 299 LIVTGSKDNSVRLW--DSESRCCVGVGTGHMGAVGAV-------AFSKKLQNFLVSGSSD 349
           + +      +   W   +     +G   G   ++          A +         G   
Sbjct: 36  ITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRT 95

Query: 350 HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWR 408
             ++V+        A+  +     A   + G  ++ +    + + L+        A    
Sbjct: 96  DYVEVFDPVTFLPIADIEL---PDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLS 152

Query: 409 LPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL------KTFEG 462
           +P        +                     S   ++    ++           +    
Sbjct: 153 VPGASDDQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA 209

Query: 463 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA 511
              S   A     G  + +  +  L            A  D +E    A
Sbjct: 210 QNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKA 258

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.6 bits (117), Expect = 9e-07
 Identities = 35/331 (10%), Positives = 74/331 (22%), Gaps = 38/331 (11%)

Query: 7   GADRKVLVWDVDGGFCTHYFKGHK--GVVSS----ILFHPDTDKSLLFSGSDDATVRVWD 60
               +  V     G    +  G      V+           T  +    G     V V+D
Sbjct: 43  AGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD 102

Query: 61  LLAKKCVATLDKH-------FSRVTSMAITSDGSTL-ISAGRDKVVNLWDLRDYSCKLTV 112
            +    +A ++           RV  +   +  + L              +   S     
Sbjct: 103 PVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLT 162

Query: 113 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL 172
            +         I PG+A   +L S                  +             + C 
Sbjct: 163 KSASCF----HIHPGAAATHYLGSCPASLA-----------ASDLAAAPAAAGIVGAQCT 207

Query: 173 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS 232
             Q  S                A+++L  +      T    +    +    +       +
Sbjct: 208 GAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRS---A 264

Query: 233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA 292
              +    +  D   +   E   +     E       S    S  ++   +     D   
Sbjct: 265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDS----DAII 320

Query: 293 LSS-GK-ILIVTGSKDNSVRLWDSESRCCVG 321
            +  G        +    + ++D+ S     
Sbjct: 321 AAQDGASDNYANSAGTEVLDIYDAASDQDQS 351

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.7 bits (107), Expect = 1e-05
 Identities = 5/64 (7%), Positives = 20/64 (31%), Gaps = 1/64 (1%)

Query: 8   ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 67
           A           G  +     +     +I+   D       + +    + ++D  + +  
Sbjct: 292 AAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350

Query: 68  ATLD 71
           ++++
Sbjct: 351 SSVE 354

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.6 bits (104), Expect = 3e-05
 Identities = 8/122 (6%), Positives = 29/122 (23%), Gaps = 20/122 (16%)

Query: 12  VLVWDVDGGFCTHYFKGHKGVVSSILFHPD--------TDKSLLF---------SGSDDA 54
                  G        G++    +  F            +   +            +   
Sbjct: 235 QGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAE 294

Query: 55  TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLI--SAGRDKVVNLWDLRDYSCKLTV 112
                     +    +        ++    DG++    ++   +V++++D      + +V
Sbjct: 295 NTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353

Query: 113 PT 114
             
Sbjct: 354 EL 355

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 64.8 bits (157), Expect = 1e-11
 Identities = 53/447 (11%), Positives = 119/447 (26%), Gaps = 68/447 (15%)

Query: 36  ILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 95
            +   D +     +  D   + + D    +    LD  ++ V    +++ G  L   GRD
Sbjct: 24  QMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRD 82

Query: 96  KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT 155
             VN+ DL                 + +              ++                
Sbjct: 83  GKVNMIDLWMKEPTTVAEI-----KIGSEARSIETSKMEGWEDKY-----------AIAG 126

Query: 156 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA--DQQ 213
                   + + ++    + +S+      E +       AA +    +    V      +
Sbjct: 127 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 186

Query: 214 LLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS 273
           +LL    ++   K   I         E  L    L    +Y   A N     V   +   
Sbjct: 187 ILLVDYTDLNNLKTTEI-------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 239

Query: 274 CSYVLAGHSEIVLCLDTCA----LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA 329
               +             A     + G +   +   D+SV L  ++          +   
Sbjct: 240 KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE----GHPDNAWK 295

Query: 330 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 389
           +     +    +  +  +  ++  ++         +  +N           +   S+AV 
Sbjct: 296 ILDSFPALGGGSLFI-KTHPNSQYLY--------VDATLN--------PEAEISGSVAV- 337

Query: 390 PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP-VDQVVITASG------ 442
            +   +     D       + +   +    G  R +   EF+    +V  +         
Sbjct: 338 FDIKAMTGDGSDPEFKTLPIAEWAGIT--EGQPR-VVQGEFNKDGTEVWFSVWNGKDQES 394

Query: 443 ------DKTIKIWSISDGSCLKTFEGH 463
                 DKT+++  +     L T  G 
Sbjct: 395 ALVVVDDKTLELKHVIKDERLVTPTGK 421

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 63.8 bits (154), Expect = 3e-11
 Identities = 60/462 (12%), Positives = 121/462 (26%), Gaps = 96/462 (20%)

Query: 36  ILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 95
            L   D       +  D   + + D  +KK V  +D  ++ V    +++ G  L+  GRD
Sbjct: 24  QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRD 82

Query: 96  KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT 155
             +++ DL              +E             F    ++ TI             
Sbjct: 83  ARIDMIDLWAKEPTKVAEIKIGIE-----ARSVESSKFKGYEDRYTI-----------AG 126

Query: 156 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLL 215
                   + + ++                +          T  P  +    + + +   
Sbjct: 127 AYWPPQFAIMDGETLEPK----------QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE 176

Query: 216 LYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS 275
               V+   K                                   +  V   D+ +++ +
Sbjct: 177 FIVNVKETGK-----------------------------------VLLVNYKDIDNLTVT 201

Query: 276 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG-TGHMGAVGAVA 334
            + A         D    SS +  +   +  N V + DS+ R    +   G     G  A
Sbjct: 202 SIGAAPFLADGGWD----SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 257

Query: 335 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL 394
                +   V  +S       S  G           K  A +   G     +   P  S 
Sbjct: 258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH 317

Query: 395 VC-------TGSQDRTACVWRLPDLVSVVTFRGHK---------RGIWSVEFSPV-DQVV 437
           +             ++  V+ L +L +                 + +   E++   D+V 
Sbjct: 318 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 377

Query: 438 ITASG------------DKTIKIWSISDGSCLKTFEGHTSSV 467
            +               DKT+K+ ++     L T  G  +  
Sbjct: 378 FSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGKFNVY 419

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.0 bits (100), Expect = 1e-04
 Identities = 19/123 (15%), Positives = 31/123 (25%), Gaps = 19/123 (15%)

Query: 15  WDVDGGFCTHYFKGHKGVVSSILFHPDT-----DKSLLFSGSDDATVRVWD--------- 60
                       +G  G    I  HP +     D +         +V V+D         
Sbjct: 288 HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ 347

Query: 61  LLAKKCVATLDKHFSRVTSMAITSDG-----STLISAGRDKVVNLWDLRDYSCKLTVPTY 115
           +L     A L +   RV        G     S          + + D +    K  V   
Sbjct: 348 VLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 407

Query: 116 EMV 118
            ++
Sbjct: 408 RLI 410

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.4 bits (88), Expect = 0.003
 Identities = 12/109 (11%), Positives = 27/109 (24%), Gaps = 6/109 (5%)

Query: 432 PVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW 491
             +   +T      I +        +K  +    +V  +     G  ++  G D  + + 
Sbjct: 30  LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMI 88

Query: 492 TVRTGEC-----IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 535
            +   E      I    +      +   G +      G          D
Sbjct: 89  DLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD 137

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 60.3 bits (144), Expect = 2e-10
 Identities = 44/286 (15%), Positives = 98/286 (34%), Gaps = 14/286 (4%)

Query: 49  SGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTL-ISAGRDKVVNLWDLRDYS 107
           + S+   + V D+ + K  AT+    S      I+ DG+ + ++      V++ D    +
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 108 CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA 167
              TVP     + V   P G        + +  ++     +     +  G+  +    + 
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP 125

Query: 168 DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM 227
           D   LY   + D T+S     +K      +V  S +G+       ++ +     +    +
Sbjct: 126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVI 185

Query: 228 ELILSKRLVGYNEE----ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 283
           + + +  +     E     + +   G +     V      V + D  +   +  +    +
Sbjct: 186 DTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD 245

Query: 284 IVLCLDTCALSS-GKILIVTGSKDNSVRLWDSESRCCVG---VGTG 325
                   A++  GK + V  S  N+V + D+ +        VG  
Sbjct: 246 P----AGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKN 287

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 301 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 356
           +  S+ +++ + D  S             +G    S       V+ +  + + +  
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSNPMG-AVISPDGTKVYVANAHSNDVSIID 60

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 26/273 (9%), Positives = 58/273 (21%), Gaps = 40/273 (14%)

Query: 264 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSVRLWDSESRCCVGV 322
           + V D++S   +  +   S  +       +S  G  + V  +  N V + D+ +   +  
Sbjct: 14  ISVIDVTSNKVTATIPVGSNPM----GAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT 69

Query: 323 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 382
                   G        Q ++ + +S     + +         +         ++  GK 
Sbjct: 70  VPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKK 129

Query: 383 INSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT------------------------- 417
           +           V             +      +                          
Sbjct: 130 LYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT 189

Query: 418 --------FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLR 469
                         GI          V        T+ +                     
Sbjct: 190 NSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAG 248

Query: 470 ASFLTRGAQI-VSCGADGLVKLWTVRTGECIAT 501
            +    G ++ V+      V +    T    AT
Sbjct: 249 IAVTPDGKKVYVALSFCNTVSVIDTATNTITAT 281

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 47.2 bits (110), Expect = 4e-06
 Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 2/56 (3%)

Query: 15  WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL 70
            D      T          + I   PD  K +  + S   TV V D       AT+
Sbjct: 229 IDTGTNKITARIPVGPDP-AGIAVTPD-GKKVYVALSFCNTVSVIDTATNTITATM 282

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 22/165 (13%), Positives = 46/165 (27%), Gaps = 2/165 (1%)

Query: 9   DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 68
              + V DV     T         +   +  PD    +  + +    V + D      +A
Sbjct: 11  SDNISVIDVTSNKVTATIPVGSNPMG-AVISPD-GTKVYVANAHSNDVSIIDTATNNVIA 68

Query: 69  TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGS 128
           T+    S              ++      +++ D    +   TV T +    +   P G 
Sbjct: 69  TVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGK 128

Query: 129 AFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 173
                 +     ++        I+ ++VG          D   +Y
Sbjct: 129 KLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVY 173

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 44.9 bits (104), Expect = 2e-05
 Identities = 6/67 (8%), Positives = 15/67 (22%), Gaps = 2/67 (2%)

Query: 396 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ-VVITASGDKTIKIWSISDG 454
                  T  +                     +  +P  + V +  S   T+ +   +  
Sbjct: 218 NVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276

Query: 455 SCLKTFE 461
           +   T  
Sbjct: 277 TITATMA 283

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 43.3 bits (100), Expect = 7e-05
 Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 2/76 (2%)

Query: 436 VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQI-VSCGADGLVKLWTVR 494
             I  S    I +  ++      T     S+ + A     G ++ V+      V +    
Sbjct: 4   AYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62

Query: 495 TGECIATYDKHEDKIW 510
           T   IAT         
Sbjct: 63  TNNVIATVPAGSSPQG 78

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 42.9 bits (99), Expect = 8e-05
 Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 2/101 (1%)

Query: 15  WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF 74
            D          K         +    T   +        TV + D    K  A +    
Sbjct: 185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG- 243

Query: 75  SRVTSMAITSDGSTL-ISAGRDKVVNLWDLRDYSCKLTVPT 114
                +A+T DG  + ++      V++ D    +   T+  
Sbjct: 244 PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (125), Expect = 6e-08
 Identities = 30/317 (9%), Positives = 72/317 (22%), Gaps = 24/317 (7%)

Query: 49  SGSDDATVRVWDLLAKKCVATLD--KHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRD 105
           +  +   + VW+L  +  +          +V  M ++ D   L    R +  V  + +  
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 106 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMW 165
               LT      +      P      S         +                  +  + 
Sbjct: 69  DDGALTFAAESAL------PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD 122

Query: 166 NADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK 225
             +        +           + +         S+ G L      ++           
Sbjct: 123 VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGP--- 179

Query: 226 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 285
                   R + ++        + E    + V    +     +    +   +    S+  
Sbjct: 180 --------RHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC-VQTLDMMPENFSDTR 230

Query: 286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG---AVAFSKKLQNF 342
              D      G+ L       + + ++       V    G                 +  
Sbjct: 231 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYL 290

Query: 343 LVSGSSDHTIKVWSFDG 359
           + +G   H I V+   G
Sbjct: 291 IAAGQKSHHISVYEIVG 307

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 52.5 bits (124), Expect = 8e-08
 Identities = 39/334 (11%), Positives = 81/334 (24%), Gaps = 31/334 (9%)

Query: 7   GADRKVLVWDVD--GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 64
              +++ VW+++  G           G V  ++  PD  + L      +  V  + +   
Sbjct: 11  PESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPD 69

Query: 65  KCVATLDKHF---SRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAV 121
               T          +T ++    G  +     +         +    + V         
Sbjct: 70  DGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE---- 125

Query: 122 CAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT 181
                 SA  S  +        K+ R         G                 + +    
Sbjct: 126 GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT----TVEGAGPRH 181

Query: 182 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE 241
           + F  ++             +   L         + T   +PE                 
Sbjct: 182 MVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN----------FSDTRW 231

Query: 242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALS-SGKILI 300
             D+    +     A       + V+ +S         G            +  SGK LI
Sbjct: 232 AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLI 291

Query: 301 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 334
             G K + + +++      +    G +   G  A
Sbjct: 292 AAGQKSHHISVYE------IVGEQGLLHEKGRYA 319

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 47.5 bits (111), Expect = 4e-06
 Identities = 11/134 (8%), Positives = 30/134 (22%), Gaps = 9/134 (6%)

Query: 297 KILIVTGSKDNSVRLW--DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKV 354
           + + +   +   + +W  + E    +       G V  +  S   +   V    +  +  
Sbjct: 4   QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA 63

Query: 355 WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS 414
           +                           +  ++       V  GS +         +   
Sbjct: 64  YRIAPDDGALTFAAESA-------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL 116

Query: 415 VVTFRGHKRGIWSV 428
            V       G+   
Sbjct: 117 PVGVVDVVEGLDGC 130

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 12/88 (13%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 364 AEQPMNLKAKAVVAA--HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH 421
           A++P+ L    ++ +      + +LA AP+ ++  T  +     +  +    +       
Sbjct: 9   ADKPIELAPAKIITSFPVNTFLENLASAPDGTIFVTNHEVGE--IVSITPDGNQQIHATV 66

Query: 422 KRGIWSVEFSPVDQVVITASGDKTIKIW 449
           +  +  + F+    +V T     +I + 
Sbjct: 67  EGKVSGLAFTSNGDLVATGWNADSIPVV 94

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 10/70 (14%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 289 DTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGS 347
                S+G+ILI     + ++ ++  + +    + +         VA        +V  S
Sbjct: 204 GVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMD--DGSVVLAS 261

Query: 348 SDHTIKVWSF 357
            D+ + ++ +
Sbjct: 262 KDYRLYIYRY 271

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	768
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.9
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.83
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.75
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.62
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.61
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.57
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.54
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.52
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.49
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.14
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.08
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.04
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.0
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.95
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.94
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.92
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.88
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.87
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.86
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.85
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.76
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.74
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.74
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.62
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.52
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.51
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.41
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.31
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.24
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.13
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.13
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.08
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.08
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.79
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.75
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.68
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.68
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.64
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.6
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.59
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.57
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.53
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.51
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.47
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.47
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.31
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.26
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.95
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.65
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.52
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.35
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.89
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.78
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.76
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.63
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.15
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.1
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	93.27
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.63
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	91.97
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	91.34
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	91.31
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.58
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	86.88
d1k8kg_	143	Arp2/3 complex 16 kDa subunit ARPC5 {Cow (Bos taur	86.76
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	84.77
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	82.15

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.6e-40  Score=331.92  Aligned_cols=316  Identities=22%  Similarity=0.453  Sum_probs=268.6

Q ss_pred             EEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEe
Q 004214           14 VWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAG   93 (768)
Q Consensus        14 vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~   93 (768)
                      .|.+... ..+.|+||.+.|++|+|+|++++  ||||+.||+|+|||+.+++++.++.+|.+.|.+++|+|++.++++++
T Consensus         2 ~w~p~~~-~~~~L~GH~~~I~~l~~sp~~~~--l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~   78 (317)
T d1vyhc1           2 EWIPRPP-EKYALSGHRSPVTRVIFHPVFSV--MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS   78 (317)
T ss_dssp             CCCCCSS-CSCEEECCSSCEEEEEECSSSSE--EEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccCCCCC-ccEEEcCCCCCeEEEEEcCCCCE--EEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccc
Confidence            4544333 36789999999999999999877  99999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceee
Q 004214           94 RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY  173 (768)
Q Consensus        94 ~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~  173 (768)
                      .++.+.+|+....+....                                                              
T Consensus        79 ~~~~~~~~~~~~~~~~~~--------------------------------------------------------------   96 (317)
T d1vyhc1          79 ADMTIKLWDFQGFECIRT--------------------------------------------------------------   96 (317)
T ss_dssp             TTSCCCEEETTSSCEEEC--------------------------------------------------------------
T ss_pred             cccccccccccccccccc--------------------------------------------------------------
Confidence            999999998765432211                                                              


Q ss_pred             eecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCC
Q 004214          174 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ  253 (768)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  253 (768)
                                                                                   ..++...+.++.+. +++.
T Consensus        97 -------------------------------------------------------------~~~~~~~~~~~~~~-~~~~  114 (317)
T d1vyhc1          97 -------------------------------------------------------------MHGHDHNVSSVSIM-PNGD  114 (317)
T ss_dssp             -------------------------------------------------------------CCCCSSCEEEEEEC-SSSS
T ss_pred             -------------------------------------------------------------cccccccceeeecc-CCCc
Confidence                                                                         12233445555555 4677


Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEE
Q 004214          254 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV  333 (768)
Q Consensus       254 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  333 (768)
                      .+++++.++.+++||+.++.....+.+|...+.++.  +.+++.. +++++.||.|++|+..++.....+.+|...+.++
T Consensus       115 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~  191 (317)
T d1vyhc1         115 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR--PNQDGTL-IASCSNDQTVRVWVVATKECKAELREHRHVVECI  191 (317)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             eEEeeccCcceeEeecccceeeeEEccCCCcceeee--cccCCCE-EEEEeCCCeEEEEeeccceeeEEEecCCCCceEE
Confidence            889999999999999999999999999999999997  6666665 9999999999999999999999999999999999


Q ss_pred             EEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 004214          334 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV  413 (768)
Q Consensus       334 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  413 (768)
                      .++|++.. .....                                ............+.++++++.|+.|++||+.+++
T Consensus       192 ~~~~~~~~-~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  238 (317)
T d1vyhc1         192 SWAPESSY-SSISE--------------------------------ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM  238 (317)
T ss_dssp             EECCSCGG-GGGGG--------------------------------CCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred             EEeecccc-ceeec--------------------------------cccceeeeeccCCceeEeccCCCEEEEEECCCCc
Confidence            99987542 11100                                1112223344567899999999999999999999


Q ss_pred             eEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214          414 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT  492 (768)
Q Consensus       414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  492 (768)
                      ++..+.+|..+|.+++|+|++++|++|+.||.|++||+.+++++.++.+|..+|++++|+|++++|++|+.||+|+|||
T Consensus       239 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         239 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-39  Score=329.14  Aligned_cols=302  Identities=19%  Similarity=0.288  Sum_probs=251.4

Q ss_pred             cCCCcEEEEECCC-----------CEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCee-----EEEe
Q 004214            7 GADRKVLVWDVDG-----------GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC-----VATL   70 (768)
Q Consensus         7 ~~dg~i~vwd~~~-----------~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~-----~~~l   70 (768)
                      +.||.+.-.....           .+.++.+ +|...|+|++|+|+|++  ||+|+ ||.|+|||+.++..     ....
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~H~~~V~~v~fs~~g~~--latg~-dg~V~iWd~~~~~~~~~~~~~~~   93 (337)
T d1gxra_          18 TADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRH--VYTGG-KGCVKVWDISHPGNKSPVSQLDC   93 (337)
T ss_dssp             CSSSCEEECCCCTTSSSSTTCCSEEEEEEEE-CCSSCCCEEEECSSSSE--EEEEC-BSEEEEEETTSTTCCSCSEEEEC
T ss_pred             CCCCCEEeeccCCcceecCCCCCCceEEEEC-CCCCcEEEEEECCCCCE--EEEEE-CCEEEEEEccCCcccceeEEeee
Confidence            3456665555422           2445566 79999999999999987  99987 79999999976532     2334


Q ss_pred             cCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcc
Q 004214           71 DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE  150 (768)
Q Consensus        71 ~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (768)
                      .+|.+.|.+++|+|+|++|++++.||.|++||+.....                                          
T Consensus        94 ~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~------------------------------------------  131 (337)
T d1gxra_          94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP------------------------------------------  131 (337)
T ss_dssp             SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--------------------------------------------
T ss_pred             cCCCCcEEEEEEcCCCCEEEEeeccccccccccccccc------------------------------------------
Confidence            57999999999999999999999999999999864210                                          


Q ss_pred             eEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeE
Q 004214          151 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI  230 (768)
Q Consensus       151 ~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~  230 (768)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (337)
T d1gxra_         132 --------------------------------------------------------------------------------  131 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214          231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR  310 (768)
Q Consensus       231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~  310 (768)
                                                                .....+..|...+.++.  +.+++.. +++++.|+.|+
T Consensus       132 ------------------------------------------~~~~~~~~~~~~v~~~~--~~~~~~~-l~s~~~d~~i~  166 (337)
T d1gxra_         132 ------------------------------------------RIKAELTSSAPACYALA--ISPDSKV-CFSCCSDGNIA  166 (337)
T ss_dssp             ------------------------------------------EEEEEEECSSSCEEEEE--ECTTSSE-EEEEETTSCEE
T ss_pred             ------------------------------------------ccccccccccccccccc--ccccccc-ccccccccccc
Confidence                                                      00112334555566654  5555554 89999999999


Q ss_pred             EEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214          311 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP  390 (768)
Q Consensus       311 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  390 (768)
                      +|++.++++.....+|...|.+++|++++. .+++++.|+.+++||++.+.          . .....|...|.+++|+|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~~~----------~-~~~~~~~~~i~~l~~~~  234 (337)
T d1gxra_         167 VWDLHNQTLVRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGR----------Q-LQQHDFTSQIFSLGYCP  234 (337)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTE----------E-EEEEECSSCEEEEEECT
T ss_pred             cccccccccccccccccccccccccccccc-ccccccccccccccccccce----------e-ecccccccceEEEEEcc
Confidence            999999999999999999999999999966 79999999999999997531          2 22345788999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEE
Q 004214          391 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA  470 (768)
Q Consensus       391 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  470 (768)
                      +++++++|+.||.+++||+.++... ....|...|++++|+|++++|++++.||.|++||+.+++++..+. |...|+++
T Consensus       235 ~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~  312 (337)
T d1gxra_         235 TGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSC  312 (337)
T ss_dssp             TSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEE
T ss_pred             cccccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEE
Confidence            9999999999999999999988765 456799999999999999999999999999999999999998876 88999999


Q ss_pred             EEEeCCCEEEEEeCCCcEEEEEC
Q 004214          471 SFLTRGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       471 ~~s~~~~~l~s~~~dg~i~iwd~  493 (768)
                      +|+|++++|++|+.||+|+|||+
T Consensus       313 ~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         313 DISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEeCCCCEEEEEeCCCeEEEEEE
Confidence            99999999999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-37  Score=327.16  Aligned_cols=243  Identities=27%  Similarity=0.496  Sum_probs=206.7

Q ss_pred             eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCC
Q 004214          279 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD  358 (768)
Q Consensus       279 ~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~  358 (768)
                      ..|...|.+++  +.+++.. |++|+.||.|++||...++.+....+|...|.++++++++. .+++++.++.+++||+.
T Consensus       118 ~~~~~~V~~l~--~s~~~~~-l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~i~~~d~~  193 (388)
T d1erja_         118 PSSDLYIRSVC--FSPDGKF-LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLR  193 (388)
T ss_dssp             -CCCCBEEEEE--ECTTSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETT
T ss_pred             cCCCCCEEEEE--ECCCCCc-ceecccccccccccccccccccccccccccccccccccccc-cccccccceeeeeeecc
Confidence            35677788886  6666665 99999999999999999999999999999999999999865 78999999999999987


Q ss_pred             CCCCCCccccccceeeEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceEEEEe-------ccCCCeEEEEE
Q 004214          359 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFR-------GHKRGIWSVEF  430 (768)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~v~~  430 (768)
                      ..          ....... +.....++.+++ ++.+|++|+.||.|++|+..++.....+.       +|..+|++++|
T Consensus       194 ~~----------~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  262 (388)
T d1erja_         194 TG----------QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF  262 (388)
T ss_dssp             TT----------EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred             cc----------ccccccc-cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEE
Confidence            43          2233333 344455555555 88999999999999999999887766543       57889999999


Q ss_pred             ccCCCEEEEeeCCCcEEEEeCCCCc------------eeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeE
Q 004214          431 SPVDQVVITASGDKTIKIWSISDGS------------CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC  498 (768)
Q Consensus       431 s~~~~~l~t~~~d~~i~iwd~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~  498 (768)
                      +|++++|++++.||.|++||+.++.            +......|...|++++|+|++++|++|+.||.|++||+.++++
T Consensus       263 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~  342 (388)
T d1erja_         263 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP  342 (388)
T ss_dssp             CTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE
T ss_pred             CCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence            9999999999999999999997653            3455667899999999999999999999999999999999999


Q ss_pred             EEEeccCCCcEEEEEE------cCCCCEEEEEeCCCcEEEEEcC
Q 004214          499 IATYDKHEDKIWALAV------GKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       499 ~~~~~~~~~~v~~l~~------s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      +.++.+|.+.|+++++      +|++.+|++|+.||.|+||+++
T Consensus       343 ~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         343 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            9999999999999975      5789999999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-37  Score=318.25  Aligned_cols=294  Identities=24%  Similarity=0.410  Sum_probs=251.2

Q ss_pred             CEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEE
Q 004214           20 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN   99 (768)
Q Consensus        20 ~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~   99 (768)
                      .+..++|+||.+.|++|+|+|++++  ||||+.||+|+|||+.+++.+..+..|..+|.+++|+|+++++++++.|+.+.
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~--l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~  122 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRL--LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS  122 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSE--EEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCE--EEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceee
Confidence            3567889999999999999999887  99999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCc
Q 004214          100 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD  179 (768)
Q Consensus       100 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~  179 (768)
                      +|+.........                                                                    
T Consensus       123 ~~~~~~~~~~~~--------------------------------------------------------------------  134 (340)
T d1tbga_         123 IYNLKTREGNVR--------------------------------------------------------------------  134 (340)
T ss_dssp             EEESSSSCSCCC--------------------------------------------------------------------
T ss_pred             cccccccccccc--------------------------------------------------------------------
Confidence            998754321000                                                                    


Q ss_pred             eeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEe
Q 004214          180 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT  259 (768)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  259 (768)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (340)
T d1tbga_         135 --------------------------------------------------------------------------------  134 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCC
Q 004214          260 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL  339 (768)
Q Consensus       260 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  339 (768)
                                    ....+.+|.....+.   ....+.. +..+..++....+.............+...+....+.+.+
T Consensus       135 --------------~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (340)
T d1tbga_         135 --------------VSRELAGHTGYLSCC---RFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             --------------EEEEECCCSSCEEEE---EEEETTE-EEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred             --------------cceeccccccccccc---ccccccc-cccccccccccccccccccccccccccceeEeeecccccc
Confidence                          000112222222222   2222333 7777888889999988888888888888999999999885


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 004214          340 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR  419 (768)
Q Consensus       340 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  419 (768)
                      . ++++++.|+.|++||++.          ......+..|...|++++|+|++++|++|+.||.|++|++........+.
T Consensus       197 ~-~~~~~~~d~~v~i~d~~~----------~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~  265 (340)
T d1tbga_         197 R-LFVSGACDASAKLWDVRE----------GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS  265 (340)
T ss_dssp             S-EEEEEETTTEEEEEETTT----------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             c-eeEEeecCceEEEEECCC----------CcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccc
Confidence            5 899999999999999974          34566677899999999999999999999999999999999988877664


Q ss_pred             --ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214          420 --GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT  492 (768)
Q Consensus       420 --~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  492 (768)
                        .+..+|++++|+|++++|++|+.||.|++||+.+++++.++.+|..+|++++|+|++++|++|+.||.|+|||
T Consensus       266 ~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence              4667899999999999999999999999999999999999999999999999999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-37  Score=316.72  Aligned_cols=281  Identities=17%  Similarity=0.273  Sum_probs=249.0

Q ss_pred             cccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceee-----eeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214          236 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS-----YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR  310 (768)
Q Consensus       236 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~-----~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~  310 (768)
                      .+|...|.+++|++ ++++|++|+ +|.|+|||+.++...     ....+|...|.+++  +.+++.. |++|+.||.|+
T Consensus        48 ~~H~~~V~~v~fs~-~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~--~s~dg~~-l~s~~~dg~i~  122 (337)
T d1gxra_          48 LNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK--LLPDGCT-LIVGGEASTLS  122 (337)
T ss_dssp             ECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEE--ECTTSSE-EEEEESSSEEE
T ss_pred             CCCCCcEEEEEECC-CCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEE--EcCCCCE-EEEeecccccc
Confidence            37899999999985 778999987 799999999765432     23457899999998  7777765 99999999999


Q ss_pred             EEeCCC--ceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEE
Q 004214          311 LWDSES--RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV  388 (768)
Q Consensus       311 iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  388 (768)
                      +||+..  ......+..|...+.+++|+|++. ++++++.|+.|++|++...          ........|...|.+++|
T Consensus       123 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~----------~~~~~~~~~~~~v~~l~~  191 (337)
T d1gxra_         123 IWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQ----------TLVRQFQGHTDGASCIDI  191 (337)
T ss_dssp             EEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT----------EEEEEECCCSSCEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccc-ccccccccccccccccccc----------cccccccccccccccccc
Confidence            999874  456677788999999999999965 8999999999999999743          355566778999999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEE
Q 004214          389 APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL  468 (768)
Q Consensus       389 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  468 (768)
                      ++++..+++++.|+.+++||+++++.+..+. |..+|.+++|+|++++|++|+.|+.|++||+.++.... ...|...|+
T Consensus       192 s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~  269 (337)
T d1gxra_         192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVL  269 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEE
T ss_pred             cccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccccccc-ccccccccc
Confidence            9999999999999999999999998887765 88999999999999999999999999999998887654 456999999


Q ss_pred             EEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214          469 RASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       469 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~  535 (768)
                      +++|+|+|++|++++.||.|++||+.+++++..+. |...|++++|+|++++|++|+.||.|+||++
T Consensus       270 ~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             eEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            99999999999999999999999999999998876 8899999999999999999999999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-37  Score=315.79  Aligned_cols=287  Identities=26%  Similarity=0.454  Sum_probs=267.7

Q ss_pred             eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEE
Q 004214          233 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW  312 (768)
Q Consensus       233 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iw  312 (768)
                      ..+.||.+.|.+++|+| ++++|++|+.||.|++||+.+++.+..+.+|...|.++.  +.+++.. ++++..++.+.+|
T Consensus        11 ~~L~GH~~~I~~l~~sp-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~--~~~~~~~-~~~~~~~~~~~~~   86 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS--FDHSGKL-LASCSADMTIKLW   86 (317)
T ss_dssp             CEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEE--ECTTSSE-EEEEETTSCCCEE
T ss_pred             EEEcCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEe--eeccccc-ccccccccccccc
Confidence            35789999999999985 678999999999999999999999999999999999997  6666665 9999999999999


Q ss_pred             eCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214          313 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND  392 (768)
Q Consensus       313 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  392 (768)
                      +.........+.+|...+.++.++|++. .+++++.|+.+++||+...          .....+..|...+.+++++|++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  155 (317)
T d1vyhc1          87 DFQGFECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTG----------YCVKTFTGHREWVRMVRPNQDG  155 (317)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTC----------CEEEEEECCSSCEEEEEECTTS
T ss_pred             cccccccccccccccccceeeeccCCCc-eEEeeccCcceeEeecccc----------eeeeEEccCCCcceeeecccCC
Confidence            9999999999999999999999999966 7999999999999999743          3556677899999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCC--------------------CEEEEeeCCCcEEEEeCC
Q 004214          393 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD--------------------QVVITASGDKTIKIWSIS  452 (768)
Q Consensus       393 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~--------------------~~l~t~~~d~~i~iwd~~  452 (768)
                      .+|++++.|+.|++|++.+++....+.+|...+.++.|+|++                    .++++++.|+.|++||+.
T Consensus       156 ~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  235 (317)
T d1vyhc1         156 TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS  235 (317)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred             CEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECC
Confidence            999999999999999999999999999999999999998864                    378999999999999999


Q ss_pred             CCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 004214          453 DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL  532 (768)
Q Consensus       453 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~v  532 (768)
                      +++++.++.+|...|++++|+|++++|++|+.||.|++||+.+++++.++.+|.++|++++|+|++++|++|+.||.|+|
T Consensus       236 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~i  315 (317)
T d1vyhc1         236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV  315 (317)
T ss_dssp             TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             CCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EE
Q 004214          533 WH  534 (768)
Q Consensus       533 w~  534 (768)
                      ||
T Consensus       316 Wd  317 (317)
T d1vyhc1         316 WE  317 (317)
T ss_dssp             EC
T ss_pred             eC
Confidence            96

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-37  Score=324.70  Aligned_cols=317  Identities=25%  Similarity=0.419  Sum_probs=255.4

Q ss_pred             eecCCCcEEEEECCCCE----EEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEec---------
Q 004214            5 LEGADRKVLVWDVDGGF----CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD---------   71 (768)
Q Consensus         5 tg~~dg~i~vwd~~~~~----~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~---------   71 (768)
                      .+..++.+.+|+.....    .++...+|.+.|+||+|+|||++  ||+|+ |++|+|||+.+++.+..+.         
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~--lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~  109 (388)
T d1erja_          33 KKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEY--LATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP  109 (388)
T ss_dssp             EEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSE--EEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred             ccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCE--EEEEe-CCeEEEEEecccceEeeecccccccccc
Confidence            46678899999986443    22344579999999999999987  99987 8999999999998887764         


Q ss_pred             ---------CccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhh
Q 004214           72 ---------KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI  142 (768)
Q Consensus        72 ---------~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  142 (768)
                               +|...|++++|+|+|++|++++.||.|++||...++.+..                               
T Consensus       110 ~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~-------------------------------  158 (388)
T d1erja_         110 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI-------------------------------  158 (388)
T ss_dssp             ---------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-------------------------------
T ss_pred             cccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccc-------------------------------
Confidence                     3566799999999999999999999999999877653322                               


Q ss_pred             hcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccC
Q 004214          143 KKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV  222 (768)
Q Consensus       143 ~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~  222 (768)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (388)
T d1erja_         159 --------------------------------------------------------------------------------  158 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEE
Q 004214          223 PEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVT  302 (768)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~  302 (768)
                                  ..+|...|.++.+.+ ++..+++++.++.+++||..+.........+...+...   +.+.++.+|++
T Consensus       159 ------------~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~  222 (388)
T d1erja_         159 ------------LQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA---VSPGDGKYIAA  222 (388)
T ss_dssp             ------------ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE---ECSTTCCEEEE
T ss_pred             ------------ccccccccccccccc-ccccccccccceeeeeeecccccccccccccccccccc---ccCCCCCeEEE
Confidence                        223455667777764 67788899999999999999988887777666655444   56666666999


Q ss_pred             EeCCCeEEEEeCCCceEEEee-------ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCc--ccccccee
Q 004214          303 GSKDNSVRLWDSESRCCVGVG-------TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE--QPMNLKAK  373 (768)
Q Consensus       303 ~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~  373 (768)
                      |+.||.|++|+..++.....+       .+|.+.|.+++|+|++. +|++++.||.|++||+........  ........
T Consensus       223 ~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  301 (388)
T d1erja_         223 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE  301 (388)
T ss_dssp             EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC---------------CEE
T ss_pred             EcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC-EEEEEECCCcEEEEeccCCcccccccccccccee
Confidence            999999999999988776654       36889999999999966 899999999999999986543221  11223345


Q ss_pred             eEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEE------ccCCCEEEEeeCCCcEE
Q 004214          374 AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEF------SPVDQVVITASGDKTIK  447 (768)
Q Consensus       374 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~------s~~~~~l~t~~~d~~i~  447 (768)
                      .....|...|.+++|+|++++|++|+.||.|++||+.+++++..+.+|...|+++++      +|++++|++|+.||+|+
T Consensus       302 ~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~  381 (388)
T d1erja_         302 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR  381 (388)
T ss_dssp             EEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEE
T ss_pred             eecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEE
Confidence            566778999999999999999999999999999999999999999999999999975      57899999999999999


Q ss_pred             EEeCC
Q 004214          448 IWSIS  452 (768)
Q Consensus       448 iwd~~  452 (768)
                      ||+++
T Consensus       382 iW~~~  386 (388)
T d1erja_         382 IWKYK  386 (388)
T ss_dssp             EEEEE
T ss_pred             EEeee
Confidence            99974

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.3e-38  Score=315.73  Aligned_cols=287  Identities=21%  Similarity=0.241  Sum_probs=242.3

Q ss_pred             cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 004214           28 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS  107 (768)
Q Consensus        28 gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~  107 (768)
                      .+++.+.+++++|+|+.  |+.++ ++.|.+||+.++.....+.+|...|++++|+|+|++|++++.||.|++||+.++.
T Consensus        15 ~~r~~~~~~a~~~~g~~--l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~   91 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDK--IQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT   91 (311)
T ss_dssp             CCTTCCCCCEECTTSSE--EEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred             CCCCCeEEEEEcCCCCE--EEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc
Confidence            35677888999999987  77664 5679999999999999999999999999999999999999999999999987542


Q ss_pred             eeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeeccccc
Q 004214          108 CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMD  187 (768)
Q Consensus       108 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~  187 (768)
                      ...                                                                             
T Consensus        92 ~~~-----------------------------------------------------------------------------   94 (311)
T d1nr0a1          92 HIL-----------------------------------------------------------------------------   94 (311)
T ss_dssp             CCE-----------------------------------------------------------------------------
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            110                                                                             


Q ss_pred             CcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004214          188 DSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY  267 (768)
Q Consensus       188 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~  267 (768)
                                                                                                      
T Consensus        95 --------------------------------------------------------------------------------   94 (311)
T d1nr0a1          95 --------------------------------------------------------------------------------   94 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeC--CCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEE
Q 004214          268 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK--DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS  345 (768)
Q Consensus       268 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  345 (768)
                             ...+..|..+|.+++  +.+++.. +++++.  +..+++|++.+++....+.+|...|.+++|+|+++.++++
T Consensus        95 -------~~~~~~~~~~v~~v~--~s~d~~~-l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~s  164 (311)
T d1nr0a1          95 -------KTTIPVFSGPVKDIS--WDSESKR-IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS  164 (311)
T ss_dssp             -------EEEEECSSSCEEEEE--ECTTSCE-EEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred             -------ccccccccCcccccc--ccccccc-cccccccccccccccccccccccccccccccccccccccccceeeecc
Confidence                   012345666777776  5566665 666654  4669999999999988999999999999999998877999


Q ss_pred             EeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe------
Q 004214          346 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR------  419 (768)
Q Consensus       346 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------  419 (768)
                      |+.||.|++||++.          .........|...|++++++|+++++++++.|+.|++||+.++.....+.      
T Consensus       165 gs~d~~i~i~d~~~----------~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~  234 (311)
T d1nr0a1         165 GSDDNTVAIFEGPP----------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN  234 (311)
T ss_dssp             EETTSCEEEEETTT----------BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSS
T ss_pred             cccccccccccccc----------cccccccccccccccccccCcccccccccccccccccccccccccccccccccccc
Confidence            99999999999983          34566677899999999999999999999999999999999988777664      


Q ss_pred             -ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC-cEEEEEEEeCCCEEEEEeCCCcEEEEECC
Q 004214          420 -GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS-SVLRASFLTRGAQIVSCGADGLVKLWTVR  494 (768)
Q Consensus       420 -~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  494 (768)
                       +|...|++++|+|++++|++|+.||.|+|||++++++++++..|.. ....+.+.+++++|++++.||.|++||.+
T Consensus       235 ~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         235 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             CSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             ccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence             5788999999999999999999999999999999999999987654 23344556667789999999999999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.9e-37  Score=315.44  Aligned_cols=345  Identities=23%  Similarity=0.371  Sum_probs=255.1

Q ss_pred             EEEEEcCCCcE-EEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEE
Q 004214           23 THYFKGHKGVV-SSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW  101 (768)
Q Consensus        23 ~~~l~gh~~~V-~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vW  101 (768)
                      ..+|+||...| +|++|  ++++  ||||+.||+|+|||+.+++++.++.+|.++|++++|+|+ .+|++++.|+.|++|
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~--l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw   79 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNY--VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVW   79 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTE--EEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEE
T ss_pred             cEEECCcCCCcEEEEEE--CCCE--EEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccc
Confidence            56799998875 66655  5566  999999999999999999999999999999999999985 589999999999999


Q ss_pred             ECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCcee
Q 004214          102 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT  181 (768)
Q Consensus       102 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~  181 (768)
                      ++...+..........                                                                
T Consensus        80 ~~~~~~~~~~~~~~~~----------------------------------------------------------------   95 (355)
T d1nexb2          80 DIKKGCCTHVFEGHNS----------------------------------------------------------------   95 (355)
T ss_dssp             ETTTTEEEEEECCCSS----------------------------------------------------------------
T ss_pred             cccccccccccccccc----------------------------------------------------------------
Confidence            9987764433221100                                                                


Q ss_pred             ecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCC
Q 004214          182 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI  261 (768)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~  261 (768)
                                                                               ........ ..++...+++++.+
T Consensus        96 ---------------------------------------------------------~~~~~~~~-~~~~~~~~~~~~~d  117 (355)
T d1nexb2          96 ---------------------------------------------------------TVRCLDIV-EYKNIKYIVTGSRD  117 (355)
T ss_dssp             ---------------------------------------------------------CEEEEEEE-EETTEEEEEEEETT
T ss_pred             ---------------------------------------------------------cccccccc-cccccceeeeecCC
Confidence                                                                     00001111 12456678888888


Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN  341 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  341 (768)
                      +.|++||+.+.................   ..+..                   ..........|...+.......  . 
T Consensus       118 ~~i~iw~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------------~~~~~~~~~~~~~~v~~~~~~~--~-  172 (355)
T d1nexb2         118 NTLHVWKLPKESSVPDHGEEHDYPLVF---HTPEE-------------------NPYFVGVLRGHMASVRTVSGHG--N-  172 (355)
T ss_dssp             SEEEEEECCC-----------CCCEEE---SCTTT-------------------CTTEEEEEECCSSCEEEEEEET--T-
T ss_pred             CcEEEEEccCCceeccccccceeccce---ecccc-------------------ccceeeeeeecccccccccccc--c-
Confidence            999999987766543332211111111   11111                   1112223344556665554433  3 


Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEecc
Q 004214          342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH  421 (768)
Q Consensus       342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  421 (768)
                      +++++..|+.|++||+...          ........+...+.++.++|++.++++++.|+.|++||+.++..+..+.+|
T Consensus       173 ~~~~~~~d~~i~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h  242 (355)
T d1nexb2         173 IVVSGSYDNTLIVWDVAQM----------KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH  242 (355)
T ss_dssp             EEEEEETTSCEEEEETTTT----------EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             eeeeecccceeeeeecccc----------cceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccc
Confidence            7999999999999999743          345566678888999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEE-EEeCCCEEEEEeCCCcEEEEECCCCeEEE
Q 004214          422 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRAS-FLTRGAQIVSCGADGLVKLWTVRTGECIA  500 (768)
Q Consensus       422 ~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  500 (768)
                      ...|.+++|+  +++|++|+.||.|++||+.++...  +..|...+..+. ++++++++++| .||.|++||+++|+++.
T Consensus       243 ~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~  317 (355)
T d1nexb2         243 TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVH  317 (355)
T ss_dssp             SSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCC
T ss_pred             cccccccccc--cceeeeeeccccccccccccccee--cccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence            9999999987  579999999999999999877654  444666666554 56677766665 58999999999999885


Q ss_pred             -EeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214          501 -TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       501 -~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~  535 (768)
                       .+.+|.++|++++|+|+ ..+++++.||.++||..
T Consensus       318 ~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         318 ANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             SCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             EEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence             46789999999999986 47888999999777643

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.8e-37  Score=309.33  Aligned_cols=280  Identities=19%  Similarity=0.300  Sum_probs=240.0

Q ss_pred             CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214          239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC  318 (768)
Q Consensus       239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  318 (768)
                      .+.+..+++.| +++.++.+. ++.|.+|++.++.....+.+|...|++++  +.|++.. |++|+.||.|++||+.++.
T Consensus        17 r~~~~~~a~~~-~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~--~sp~g~~-latg~~dg~i~iwd~~~~~   91 (311)
T d1nr0a1          17 RGTAVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAK--TSPSGYY-CASGDVHGNVRIWDTTQTT   91 (311)
T ss_dssp             TTCCCCCEECT-TSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEE--ECTTSSE-EEEEETTSEEEEEESSSTT
T ss_pred             CCCeEEEEEcC-CCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEE--EeCCCCe-EeccccCceEeeeeeeccc
Confidence            34556677764 666777775 46799999999999999999999999998  7777665 9999999999999998765


Q ss_pred             E--EEeeecccCcEEEEEEecCCCcEEEEEeC--CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE
Q 004214          319 C--VGVGTGHMGAVGAVAFSKKLQNFLVSGSS--DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL  394 (768)
Q Consensus       319 ~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  394 (768)
                      .  ...+..|.++|.+++|+|+++ ++++++.  +..+++|++....          ....+..|...|++++|+|++++
T Consensus        92 ~~~~~~~~~~~~~v~~v~~s~d~~-~l~~~~~~~~~~~~v~~~~~~~----------~~~~l~~h~~~v~~v~~~~~~~~  160 (311)
T d1nr0a1          92 HILKTTIPVFSGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDTGT----------SNGNLTGQARAMNSVDFKPSRPF  160 (311)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTSC-EEEEEECCSSCSEEEEETTTCC----------BCBCCCCCSSCEEEEEECSSSSC
T ss_pred             cccccccccccCcccccccccccc-cccccccccccccccccccccc----------cccccccccccccccccccccee
Confidence            3  355788999999999999976 6777765  5669999998542          33445678899999999999885


Q ss_pred             -EEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee-------cCCCc
Q 004214          395 -VCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-------GHTSS  466 (768)
Q Consensus       395 -l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-------~~~~~  466 (768)
                       +++|+.||.|++||+++++....+.+|..+|+++.|+|+++++++++.|+.|++||+.++..+..+.       +|...
T Consensus       161 ~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~  240 (311)
T d1nr0a1         161 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS  240 (311)
T ss_dssp             EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred             eecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccccc
Confidence             8889999999999999999999999999999999999999999999999999999999998887765       68899


Q ss_pred             EEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCC---cEEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          467 VLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED---KIWALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       467 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      |++++|+|++++|++|+.||.|+|||+.+++++.++..|..   .+.++.|  ++..|++++.||.|++||++
T Consensus       241 V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         241 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             ccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence            99999999999999999999999999999999999876653   3444544  56679999999999999964

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-36  Score=307.73  Aligned_cols=328  Identities=24%  Similarity=0.461  Sum_probs=261.6

Q ss_pred             EECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeC
Q 004214           15 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR   94 (768)
Q Consensus        15 wd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~   94 (768)
                      |+..+.++.+.|+||.+.|.+ +++++|++  ||||+.||+|+|||+.+++++.++.+|.+.|.+++|+|+  +|++++.
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~--l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~   75 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGST   75 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTE--EEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEET
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCE--EEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--cccccee
Confidence            556667778899999998865 46777877  999999999999999999999999999999999999975  9999999


Q ss_pred             CCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeee
Q 004214           95 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE  174 (768)
Q Consensus        95 dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~  174 (768)
                      |+.+++|+.............                                                           
T Consensus        76 D~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------------   96 (342)
T d2ovrb2          76 DRTLKVWNAETGECIHTLYGH-----------------------------------------------------------   96 (342)
T ss_dssp             TSCEEEEETTTTEEEEEECCC-----------------------------------------------------------
T ss_pred             cccccccccccccceeccccc-----------------------------------------------------------
Confidence            999999998765432221110                                                           


Q ss_pred             ecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCE
Q 004214          175 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY  254 (768)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  254 (768)
                                                                                      ...+....   .....
T Consensus        97 ----------------------------------------------------------------~~~~~~~~---~~~~~  109 (342)
T d2ovrb2          97 ----------------------------------------------------------------TSTVRCMH---LHEKR  109 (342)
T ss_dssp             ----------------------------------------------------------------SSCEEEEE---EETTE
T ss_pred             ----------------------------------------------------------------ceeEeeee---ccccc
Confidence                                                                            00011111   12345


Q ss_pred             EEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEE
Q 004214          255 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA  334 (768)
Q Consensus       255 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  334 (768)
                      +..+..++.+.+|+..++.....+..+.......    ...... +++++.|+.|++||......+..+.+|...+..+.
T Consensus       110 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  184 (342)
T d2ovrb2         110 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV----QYDGRR-VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ  184 (342)
T ss_dssp             EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE----EECSSC-EEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE
T ss_pred             ccccccceeEEEeecccccceeeeecccccceee----ccccce-eeeecCCCeEEEeecccceeeEEEcCccccccccc
Confidence            6677777888888888887777666555544433    233444 88999999999999999999999999988887776


Q ss_pred             EecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 004214          335 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS  414 (768)
Q Consensus       335 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  414 (768)
                      +.+  . ++++++.||.|++||+...          ........|...+.+++++  +++|++|+.||.|++||+...+.
T Consensus       185 ~~~--~-~l~s~~~dg~i~~~d~~~~----------~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~  249 (342)
T d2ovrb2         185 FDG--I-HVVSGSLDTSIRVWDVETG----------NCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQC  249 (342)
T ss_dssp             ECS--S-EEEEEETTSCEEEEETTTC----------CEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE
T ss_pred             CCC--C-EEEEEeCCCeEEEeecccc----------eeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccc
Confidence            643  3 7999999999999999743          3556677888888887766  46999999999999999999988


Q ss_pred             EEEEec---cCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee-----cCCCcEEEEEEEeCCCEEEEEeCCC
Q 004214          415 VVTFRG---HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-----GHTSSVLRASFLTRGAQIVSCGADG  486 (768)
Q Consensus       415 ~~~~~~---~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~s~~~dg  486 (768)
                      ...+..   |...+.++.++  ++++++|+.||+|++||++++++++++.     +|...|++++|+|++.+|++|+.||
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dG  327 (342)
T d2ovrb2         250 LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG  327 (342)
T ss_dssp             EEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred             cccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            888775   44556666655  6799999999999999999999998875     5778899999999999999999998


Q ss_pred             c----EEEEECCC
Q 004214          487 L----VKLWTVRT  495 (768)
Q Consensus       487 ~----i~iwd~~~  495 (768)
                      +    |++||++.
T Consensus       328 t~~~~l~~~Df~~  340 (342)
T d2ovrb2         328 TEETKLLVLDFDV  340 (342)
T ss_dssp             SSCCEEEEEECCC
T ss_pred             CCeeEEEEEeCCC
Confidence            5    99999853

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.8e-35  Score=301.44  Aligned_cols=291  Identities=21%  Similarity=0.358  Sum_probs=259.9

Q ss_pred             eeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC
Q 004214          228 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN  307 (768)
Q Consensus       228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg  307 (768)
                      .....+.+.||.+.|.+++|++ ++++|++|+.||.|++||+.+++.+..+..|...|.+++  +.+++.. +++|+.|+
T Consensus        44 ~~~~~~tL~GH~~~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~--~~~~~~~-l~~~~~d~  119 (340)
T d1tbga_          44 QMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA--YAPSGNY-VACGGLDN  119 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEE--ECTTSSE-EEEEETTC
T ss_pred             ceeeeEEECCCCCCEEEEEECC-CCCEEEEEECCCceeeeecccceeEEEEecccccEEeeE--eecccee-eeeecccc
Confidence            3445577899999999999985 788999999999999999999999999999999999997  7777765 99999999


Q ss_pred             eEEEEeCCCc----eEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCe
Q 004214          308 SVRLWDSESR----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI  383 (768)
Q Consensus       308 ~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i  383 (768)
                      .+++|+....    .....+.+|..........+. . .+.....+.....+....          .........+...+
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~  187 (340)
T d1tbga_         120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-N-QIVTSSGDTTCALWDIET----------GQQTTTFTGHTGDV  187 (340)
T ss_dssp             CEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEET-T-EEEEEETTTEEEEEETTT----------TEEEEEEECCSSCE
T ss_pred             eeecccccccccccccceecccccccccccccccc-c-cccccccccccccccccc----------ccccccccccceeE
Confidence            9999997653    455667788887777776665 3 588888999999998763          23445556677889


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEee--
Q 004214          384 NSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE--  461 (768)
Q Consensus       384 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~--  461 (768)
                      ....+.+.+.++++|+.|+.|++||+++++.+..+.+|..+|++++|+|++++|++|+.||.|++||+.....+..+.  
T Consensus       188 ~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~  267 (340)
T d1tbga_         188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD  267 (340)
T ss_dssp             EEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred             eeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998887764  


Q ss_pred             cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214          462 GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  534 (768)
Q Consensus       462 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~  534 (768)
                      .+...|++++|+|++++|++|+.||.|++||+.+++++.++.+|.++|++++|+|++++|++|+.||.|+|||
T Consensus       268 ~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            5667899999999999999999999999999999999999999999999999999999999999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.6e-36  Score=311.69  Aligned_cols=296  Identities=19%  Similarity=0.264  Sum_probs=229.4

Q ss_pred             CCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCe--eEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 004214           29 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDY  106 (768)
Q Consensus        29 h~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~--~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~  106 (768)
                      +..+|+|++|+|||+.  ||+|+.||.|+|||+.+++  ++..+++|.++|++++|+|++++|++++.|+.|++||+.++
T Consensus         6 ~~~pIt~~~~s~dg~~--la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~   83 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQ--IAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR   83 (371)
T ss_dssp             CSSCCCEEEECTTSSE--EEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred             CCCCeEEEEECCCCCE--EEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccc
Confidence            4578999999999987  9999999999999998775  67888999999999999999999999999999999997653


Q ss_pred             eeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccc
Q 004214          107 SCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEM  186 (768)
Q Consensus       107 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~  186 (768)
                      .....                                                                           
T Consensus        84 ~~~~~---------------------------------------------------------------------------   88 (371)
T d1k8kc_          84 TWKPT---------------------------------------------------------------------------   88 (371)
T ss_dssp             EEEEE---------------------------------------------------------------------------
T ss_pred             ccccc---------------------------------------------------------------------------
Confidence            21100                                                                           


Q ss_pred             cCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004214          187 DDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQV  266 (768)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i  266 (768)
                                                                                                      
T Consensus        89 --------------------------------------------------------------------------------   88 (371)
T d1k8kc_          89 --------------------------------------------------------------------------------   88 (371)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce----EEEeeecccCcEEEEEEecCCCcE
Q 004214          267 YDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC----CVGVGTGHMGAVGAVAFSKKLQNF  342 (768)
Q Consensus       267 ~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~  342 (768)
                               ..+.+|...|.++.  +.+++.. |++|+.|+.+++|++....    .......|...|.+++|+|++. +
T Consensus        89 ---------~~~~~~~~~v~~i~--~~p~~~~-l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~  155 (371)
T d1k8kc_          89 ---------LVILRINRAARCVR--WAPNEKK-FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-L  155 (371)
T ss_dssp             ---------EECCCCSSCEEEEE--ECTTSSE-EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-E
T ss_pred             ---------cccccccccccccc--ccccccc-ceeecccCcceeeeeeccccccccccccccccccccccccccccc-c
Confidence                     01223445555555  4455554 7777777777777665432    2334457889999999999966 7


Q ss_pred             EEEEeCCCeEEEEeCCCCCCCCcc--------ccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 004214          343 LVSGSSDHTIKVWSFDGLSDDAEQ--------PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS  414 (768)
Q Consensus       343 l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  414 (768)
                      |++|+.|++|++|+..........        ............|...|.+++|+|++++|++++.|+.|++||+.++..
T Consensus       156 l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~  235 (371)
T d1k8kc_         156 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA  235 (371)
T ss_dssp             EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE
T ss_pred             eeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccc
Confidence            999999999999998754321111        111223445567889999999999999999999999999999999999


Q ss_pred             EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe----------------------------------
Q 004214          415 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF----------------------------------  460 (768)
Q Consensus       415 ~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~----------------------------------  460 (768)
                      +..+..|..+|.+++|+|++++|++|+ |+.+++|..........+                                  
T Consensus       236 ~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (371)
T d1k8kc_         236 VATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA  314 (371)
T ss_dssp             EEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC------
T ss_pred             eeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccc
Confidence            999999999999999999998887765 677777654322110000                                  


Q ss_pred             -------ecCCCcEEEEEEEeCC----CEEEEEeCCCcEEEEECCC
Q 004214          461 -------EGHTSSVLRASFLTRG----AQIVSCGADGLVKLWTVRT  495 (768)
Q Consensus       461 -------~~~~~~v~~~~~s~~~----~~l~s~~~dg~i~iwd~~~  495 (768)
                             ..|.+.|+++++.+.+    ..++|++.||.|++||+++
T Consensus       315 ~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         315 AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             ---CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                   1388899999998865    3689999999999999865

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=296.67  Aligned_cols=328  Identities=25%  Similarity=0.472  Sum_probs=265.3

Q ss_pred             EECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccc
Q 004214           59 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN  138 (768)
Q Consensus        59 Wd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  138 (768)
                      |+..+.++...|+||.+.|.+ +++++|++|+|||.||+|++||+.+++++.++                          
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~--------------------------   53 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL--------------------------   53 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEEC--------------------------
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEE--------------------------
Confidence            666677888899999998865 46678999999999999999999887654332                          


Q ss_pred             hhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEe
Q 004214          139 QQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYT  218 (768)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~  218 (768)
                                                                                                      
T Consensus        54 --------------------------------------------------------------------------------   53 (342)
T d2ovrb2          54 --------------------------------------------------------------------------------   53 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCE
Q 004214          219 TVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI  298 (768)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~  298 (768)
                                       .+|...|.+++|.+   .++++++.|+.+++|+............+...+....    .....
T Consensus        54 -----------------~~h~~~V~~v~~~~---~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  109 (342)
T d2ovrb2          54 -----------------VGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH----LHEKR  109 (342)
T ss_dssp             -----------------CCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE----EETTE
T ss_pred             -----------------eCCCCCEEEEEeCC---CccccceecccccccccccccceecccccceeEeeee----ccccc
Confidence                             24556777777764   3889999999999999988887777777766666553    22333


Q ss_pred             EEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec
Q 004214          299 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA  378 (768)
Q Consensus       299 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  378 (768)
                       +..+..|+.+.+|+..++.....+..+...........  . .+++++.|+.|++||...          .........
T Consensus       110 -~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~d~~i~~~d~~~----------~~~~~~~~~  175 (342)
T d2ovrb2         110 -VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG--R-RVVSGAYDFMVKVWDPET----------ETCLHTLQG  175 (342)
T ss_dssp             -EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECS--S-CEEEEETTSCEEEEEGGG----------TEEEEEECC
T ss_pred             -ccccccceeEEEeecccccceeeeecccccceeecccc--c-eeeeecCCCeEEEeeccc----------ceeeEEEcC
Confidence             78899999999999999988877776655554443332  3 689999999999999873          334555566


Q ss_pred             cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeE
Q 004214          379 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK  458 (768)
Q Consensus       379 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~  458 (768)
                      |...+.  .+++++.++++|+.||.|++||++.++.+..+.+|...+.+++++  +++|++++.|+.|++||+...+...
T Consensus       176 ~~~~~~--~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~  251 (342)
T d2ovrb2         176 HTNRVY--SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQ  251 (342)
T ss_dssp             CSSCEE--EEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             cccccc--cccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccc
Confidence            665554  455678899999999999999999999999999999999988876  5699999999999999999998888


Q ss_pred             Eeec---CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEec-----cCCCcEEEEEEcCCCCEEEEEeCCCc-
Q 004214          459 TFEG---HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-----KHEDKIWALAVGKKTEMFATGGSDAL-  529 (768)
Q Consensus       459 ~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~l~~s~~~~~l~s~~~dg~-  529 (768)
                      .+.+   |...+.++.  ++++++++|+.||.|++||+++++++..+.     +|...|++++|+|++.+|++|+.||+ 
T Consensus       252 ~~~~~~~~~~~~~~~~--~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~  329 (342)
T d2ovrb2         252 TLQGPNKHQSAVTCLQ--FNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE  329 (342)
T ss_dssp             EECSTTSCSSCEEEEE--ECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSS
T ss_pred             cccccceeeeceeecc--cCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCC
Confidence            8775   445565555  456799999999999999999999998874     57788999999999999999999985 


Q ss_pred             ---EEEEEcCC
Q 004214          530 ---VNLWHDST  537 (768)
Q Consensus       530 ---v~vw~~~~  537 (768)
                         |.+||+..
T Consensus       330 ~~~l~~~Df~~  340 (342)
T d2ovrb2         330 ETKLLVLDFDV  340 (342)
T ss_dssp             CCEEEEEECCC
T ss_pred             eeEEEEEeCCC
Confidence               99999864

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.4e-35  Score=294.66  Aligned_cols=290  Identities=21%  Similarity=0.313  Sum_probs=218.7

Q ss_pred             CEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEec-CccceeEEEEEcCCCCEEEEEeCCCeE
Q 004214           20 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD-KHFSRVTSMAITSDGSTLISAGRDKVV   98 (768)
Q Consensus        20 ~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~-~h~~~V~~l~fs~d~~~L~s~~~dg~i   98 (768)
                      |...+.+.||.+.|++|+|+||+++  |+||+.||+|++||+.+++++..+. +|...|++++|+|+|+ +++++.|+.+
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~--l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v   78 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKT--LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHL   78 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSE--EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCE--EEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeE
Confidence            6778999999999999999999987  9999999999999999999998884 6999999999999986 5567779999


Q ss_pred             EEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCC
Q 004214           99 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS  178 (768)
Q Consensus        99 ~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~  178 (768)
                      ++|+..........                                                                  
T Consensus        79 ~~~~~~~~~~~~~~------------------------------------------------------------------   92 (299)
T d1nr0a2          79 KVVPAGGSGVDSSK------------------------------------------------------------------   92 (299)
T ss_dssp             EEECSSSSSSCTTS------------------------------------------------------------------
T ss_pred             EEeccCCccccccc------------------------------------------------------------------
Confidence            99987542100000                                                                  


Q ss_pred             ceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEE
Q 004214          179 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA  258 (768)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  258 (768)
                                                                                                      
T Consensus        93 --------------------------------------------------------------------------------   92 (299)
T d1nr0a2          93 --------------------------------------------------------------------------------   92 (299)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecC
Q 004214          259 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK  338 (768)
Q Consensus       259 ~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  338 (768)
                                       .....+...+.++.  +.+++.. ++ ++.++.+.+|+....  ....  ....+.+++|+|+
T Consensus        93 -----------------~~~~~~~~~~~~~~--~s~~g~~-~~-~~~~~~i~~~~~~~~--~~~~--~~~~~~~~~~s~~  147 (299)
T d1nr0a2          93 -----------------AVANKLSSQPLGLA--VSADGDI-AV-AACYKHIAIYSHGKL--TEVP--ISYNSSCVALSND  147 (299)
T ss_dssp             -----------------CCEEECSSCEEEEE--ECTTSSC-EE-EEESSEEEEEETTEE--EEEE--CSSCEEEEEECTT
T ss_pred             -----------------cccccccccccccc--ccccccc-cc-ccccccccccccccc--cccc--ccccccccccccc
Confidence                             00001122233332  3344432 33 334567777774432  2222  3345778999998


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceE---
Q 004214          339 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV---  415 (768)
Q Consensus       339 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~---  415 (768)
                      +. ++++|+.||.|++||+....         ........|...|++++|+|++++|++++.|+.|++||+.++...   
T Consensus       148 ~~-~l~~g~~dg~i~~~d~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~  217 (299)
T d1nr0a2         148 KQ-FVAVGGQDSKVHVYKLSGAS---------VSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT  217 (299)
T ss_dssp             SC-EEEEEETTSEEEEEEEETTE---------EEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC
T ss_pred             cc-cccccccccccccccccccc---------cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            65 79999999999999986431         122334568899999999999999999999999999999876554   


Q ss_pred             EEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEE--eecCC-CcEEEEEEEeCCCEEEEEeCCCcEEEEE
Q 004214          416 VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT--FEGHT-SSVLRASFLTRGAQIVSCGADGLVKLWT  492 (768)
Q Consensus       416 ~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~--~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd  492 (768)
                      ..+.+|..+|++++|+|++++|++|+.||.|++||+.++.....  ...|. ..+..+ +++++++|++++.||+|++||
T Consensus       218 ~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~iWd  296 (299)
T d1nr0a2         218 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKFWN  296 (299)
T ss_dssp             CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEETTSCEEEEE
T ss_pred             ccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeCCCEEEEEe
Confidence            34567899999999999999999999999999999988764433  33444 455555 556778999999999999999


Q ss_pred             CC
Q 004214          493 VR  494 (768)
Q Consensus       493 ~~  494 (768)
                      +.
T Consensus       297 l~  298 (299)
T d1nr0a2         297 VP  298 (299)
T ss_dssp             CC
T ss_pred             cc
Confidence            84

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.6e-35  Score=301.80  Aligned_cols=324  Identities=21%  Similarity=0.347  Sum_probs=247.4

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecC--ccceeEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK--HFSRVTS   79 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~--h~~~V~~   79 (768)
                      +||||+.||+|+|||+.++++++.+.+|.+.|++++|+|++ .  |++|+.||+|++|++...+.......  +...+..
T Consensus        25 ~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~--l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~  101 (355)
T d1nexb2          25 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-I--LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD  101 (355)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-E--EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-E--EEEEecccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999999999999863 4  99999999999999999988876654  3345667


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCC
Q 004214           80 MAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER  159 (768)
Q Consensus        80 l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (768)
                      ..+++++.++++++.|+.|++||+.+...................+..                                
T Consensus       102 ~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------  149 (355)
T d1nexb2         102 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE--------------------------------  149 (355)
T ss_dssp             EEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTT--------------------------------
T ss_pred             cccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecccc--------------------------------
Confidence            778899999999999999999999876644333221111111100000                                


Q ss_pred             cEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccC
Q 004214          160 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYN  239 (768)
Q Consensus       160 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~  239 (768)
                                                                 .....                         .....+.
T Consensus       150 -------------------------------------------~~~~~-------------------------~~~~~~~  161 (355)
T d1nexb2         150 -------------------------------------------NPYFV-------------------------GVLRGHM  161 (355)
T ss_dssp             -------------------------------------------CTTEE-------------------------EEEECCS
T ss_pred             -------------------------------------------cccee-------------------------eeeeecc
Confidence                                                       00000                         0011112


Q ss_pred             CceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE
Q 004214          240 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC  319 (768)
Q Consensus       240 ~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  319 (768)
                      ..+...   .+++++++.+..++.+++||+.+++......++...+.++.  +.+.+.. +++++.||.|++||..++..
T Consensus       162 ~~v~~~---~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~d~~i~i~d~~~~~~  235 (355)
T d1nexb2         162 ASVRTV---SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI--YDHERKR-CISASMDTTIRIWDLENGEL  235 (355)
T ss_dssp             SCEEEE---EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE--EETTTTE-EEEEETTSCEEEEETTTCCE
T ss_pred             cccccc---ccccceeeeecccceeeeeecccccceeeeecccccccccc--cccccee-eecccccceEEeeecccccc
Confidence            222222   23567899999999999999999999999998988888886  6677665 99999999999999999999


Q ss_pred             EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEE-EEccCCCEEEEE
Q 004214          320 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL-AVAPNDSLVCTG  398 (768)
Q Consensus       320 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~  398 (768)
                      +..+.+|...|.+++++++   ++++++.||.|++||+...            ......|...+.++ .+++++.++++|
T Consensus       236 ~~~~~~h~~~v~~~~~~~~---~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~g  300 (355)
T d1nexb2         236 MYTLQGHTALVGLLRLSDK---FLVSAAADGSIRGWDANDY------------SRKFSYHHTNLSAITTFYVSDNILVSG  300 (355)
T ss_dssp             EEEECCCSSCCCEEEECSS---EEEEECTTSEEEEEETTTC------------CEEEEEECTTCCCCCEEEECSSEEEEE
T ss_pred             ccccccccccccccccccc---eeeeeeccccccccccccc------------ceecccccCCceEEEEEcCCCCEEEEE
Confidence            9999999999999999764   8999999999999998743            12334556666665 456677776665


Q ss_pred             eCCCcEEEEeCCCCceEE-EEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeC
Q 004214          399 SQDRTACVWRLPDLVSVV-TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI  451 (768)
Q Consensus       399 ~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~  451 (768)
                       .||.|++||+++++.+. .+.+|..+|++++|+|+ .++++++.||+++||-+
T Consensus       301 -~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         301 -SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             -ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             -eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence             58999999999998875 46789999999999986 57888999999776654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.6e-35  Score=304.74  Aligned_cols=287  Identities=20%  Similarity=0.206  Sum_probs=237.3

Q ss_pred             CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce--eeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC
Q 004214          239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES  316 (768)
Q Consensus       239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~  316 (768)
                      .++|++++|++ ++.++|+++.++.|++||..+++  ....+.+|..+|.+++  +.|+++. |++|+.|+.|++||+.+
T Consensus         7 ~~pIt~~~~s~-dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~--fsp~~~~-l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           7 VEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVD--WAPDSNR-IVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             SSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEE--EETTTTE-EEEEETTSCEEEEEEET
T ss_pred             CCCeEEEEECC-CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEE--ECCCCCE-EEEEECCCeEEEEeecc
Confidence            36799999985 78899999999999999998765  5677899999999998  7777775 99999999999999987


Q ss_pred             ceE--EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE
Q 004214          317 RCC--VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL  394 (768)
Q Consensus       317 ~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  394 (768)
                      +..  ...+.+|...|.+++|+|+++ .+++++.|+++++|++.....      ..........|...|.+++|+|++++
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~------~~~~~~~~~~~~~~v~~v~~~p~~~~  155 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQEND------WWVCKHIKKPIRSTVLSLDWHPNSVL  155 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTT------EEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred             cccccccccccccccccccccccccc-cceeecccCcceeeeeecccc------cccccccccccccccccccccccccc
Confidence            654  344567899999999999966 899999999999999875421      11233445668899999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCC------------------ceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCce
Q 004214          395 VCTGSQDRTACVWRLPDL------------------VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC  456 (768)
Q Consensus       395 l~~~~~dg~i~i~d~~~~------------------~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~  456 (768)
                      |++|+.|++|++|+....                  ..+....+|...|.+++|+|++++|++++.|+.|++||+.++.+
T Consensus       156 l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~  235 (371)
T d1k8kc_         156 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA  235 (371)
T ss_dssp             EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE
T ss_pred             eeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccc
Confidence            999999999999997532                  34566678999999999999999999999999999999999999


Q ss_pred             eEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC--CeEEEE---------------------------------
Q 004214          457 LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT--GECIAT---------------------------------  501 (768)
Q Consensus       457 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~~~---------------------------------  501 (768)
                      +..+.+|..+|++++|+|++++|++|. |+.+++|....  +.....                                 
T Consensus       236 ~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (371)
T d1k8kc_         236 VATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA  314 (371)
T ss_dssp             EEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC------
T ss_pred             eeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccc
Confidence            999999999999999999998777654 77766665432  221100                                 


Q ss_pred             ------eccCCCcEEEEEEcCCC----CEEEEEeCCCcEEEEEcCC
Q 004214          502 ------YDKHEDKIWALAVGKKT----EMFATGGSDALVNLWHDST  537 (768)
Q Consensus       502 ------~~~~~~~v~~l~~s~~~----~~l~s~~~dg~v~vw~~~~  537 (768)
                            ...|.+.|+++++.|.+    ..++|+|.||.|++|++++
T Consensus       315 ~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         315 AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             ---CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                  01388899999997754    3689999999999999754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-34  Score=290.70  Aligned_cols=235  Identities=16%  Similarity=0.228  Sum_probs=176.3

Q ss_pred             CccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE---EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeC
Q 004214          281 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC---VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF  357 (768)
Q Consensus       281 ~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~  357 (768)
                      |...|.++.  +.+++ . +++++.|+.+++|+......   ......+...+.+++++|++. ++ +++.++.+.+|+.
T Consensus        54 h~~~v~~v~--~~~~g-~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~~-~~~~~~~i~~~~~  127 (299)
T d1nr0a2          54 HATMITGIK--TTSKG-D-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD-IA-VAACYKHIAIYSH  127 (299)
T ss_dssp             CSSCEEEEE--ECTTS-C-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS-CE-EEEESSEEEEEET
T ss_pred             CCCcEEEEE--eeccc-e-eecccceeeEEEeccCCccccccccccccccccccccccccccc-cc-ccccccccccccc
Confidence            344445544  33333 2 44555666777776543221   112234677889999999976 34 4455678999985


Q ss_pred             CCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEE-EEeccCCCeEEEEEccCCCE
Q 004214          358 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV-TFRGHKRGIWSVEFSPVDQV  436 (768)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~v~~s~~~~~  436 (768)
                      ..            ..  .......+.+++|+|+++++++|+.||.|++||+.+++... ....|..+|++++|+|++++
T Consensus       128 ~~------------~~--~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  193 (299)
T d1nr0a2         128 GK------------LT--EVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF  193 (299)
T ss_dssp             TE------------EE--EEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             cc------------cc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            41            11  12244567899999999999999999999999998876543 34568999999999999999


Q ss_pred             EEEeeCCCcEEEEeCCCCcee---EEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeE--EEEeccC-CCcEE
Q 004214          437 VITASGDKTIKIWSISDGSCL---KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC--IATYDKH-EDKIW  510 (768)
Q Consensus       437 l~t~~~d~~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~-~~~v~  510 (768)
                      |++++.|+.|++||+.++...   ..+.+|...|++++|+|++++|++|+.||.|++||+.++..  +.....| ...+.
T Consensus       194 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~  273 (299)
T d1nr0a2         194 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN  273 (299)
T ss_dssp             EEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEE
Confidence            999999999999999887654   45667999999999999999999999999999999987653  3333334 45566


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcC
Q 004214          511 ALAVGKKTEMFATGGSDALVNLWHDS  536 (768)
Q Consensus       511 ~l~~s~~~~~l~s~~~dg~v~vw~~~  536 (768)
                      ++.| +++++|++|+.||.|++|++.
T Consensus       274 ~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         274 SVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             EEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            6655 567899999999999999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-32  Score=276.83  Aligned_cols=205  Identities=13%  Similarity=0.182  Sum_probs=166.2

Q ss_pred             eCCccceEEEeeeeecCCCEEEEEEe--CCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEe
Q 004214          279 AGHSEIVLCLDTCALSSGKILIVTGS--KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS  356 (768)
Q Consensus       279 ~~~~~~v~~l~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd  356 (768)
                      ..|..+|.++.  +.+++.. +++++  .++.+.+|+..+++.+..+.+|...|.+++|+|+++.++++++.|+.+++|+
T Consensus       112 ~~~~~~v~~v~--~s~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d  188 (325)
T d1pgua1         112 QVLAGPISDIS--WDFEGRR-LCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ  188 (325)
T ss_dssp             ECCSSCEEEEE--ECTTSSE-EEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEE
T ss_pred             ccccCcEEEEE--ECCCCCc-cceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccccc
Confidence            34566677776  5666666 44433  4678999999999999999999999999999999887889999999999999


Q ss_pred             CCCCCCCCccccccceeeEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEc---c
Q 004214          357 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFS---P  432 (768)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s---~  432 (768)
                      +....       ..........|...|.+++|+|+ +.++++++.||.|++||+++++.+..+.+|..++.++.|+   |
T Consensus       189 ~~~~~-------~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~  261 (325)
T d1pgua1         189 GPPFK-------FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL  261 (325)
T ss_dssp             TTTBE-------EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES
T ss_pred             ccccc-------cceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeecc
Confidence            86431       11122223467788999999996 6899999999999999999999999999999888776666   6


Q ss_pred             CCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCc--EEEEEEEeC-CCEEEEEeCCCcEEEEEC
Q 004214          433 VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS--VLRASFLTR-GAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       433 ~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~--v~~~~~s~~-~~~l~s~~~dg~i~iwd~  493 (768)
                      ++++|++++.|+.|+|||+.++++++.+..|...  +..+++.+. +.+|++++.||.|++||+
T Consensus       262 dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            8999999999999999999999999988766553  334444433 348999999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-30  Score=263.93  Aligned_cols=283  Identities=18%  Similarity=0.241  Sum_probs=221.7

Q ss_pred             CCceeEEEEecCCCCEEEEEeCCC-cEEEEECCCc--eeeeeeeCCc-cceEEEeeeeecC-CCEEEEEEeCCCeEEEEe
Q 004214          239 NEEILDLKFLGEEEQYLAVATNIE-QVQVYDLSSM--SCSYVLAGHS-EIVLCLDTCALSS-GKILIVTGSKDNSVRLWD  313 (768)
Q Consensus       239 ~~~i~~~~~~~~~~~~l~~~~~~~-~i~i~d~~~~--~~~~~~~~~~-~~v~~l~~~~~~~-~~~~l~~~~~dg~i~iwd  313 (768)
                      ...+.+++|.+ +++.+++++.+. .|+.|+....  .....+.+|. ..|++++  +.|. ++.+|++|+.||+|++||
T Consensus        17 ~~~~t~l~~~~-~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~--fsP~~~g~~lasgs~Dg~i~iWd   93 (325)
T d1pgua1          17 RNFTTHLSYDP-TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVK--FSPIKGSQYLCSGDESGKVIVWG   93 (325)
T ss_dssp             TTCCCCCEEET-TTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEE--ECSSTTCCEEEEEETTSEEEEEE
T ss_pred             CCCeEEEEECC-CCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEE--EeeCCCCCEEEEEeCCCCEEEee
Confidence            34567888885 556777765533 3566665443  3455677774 6799998  6653 334599999999999999


Q ss_pred             CCCce--------EEEeeecccCcEEEEEEecCCCcEEEEEe--CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCe
Q 004214          314 SESRC--------CVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI  383 (768)
Q Consensus       314 ~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i  383 (768)
                      +..+.        ....+..|.++|.+++|++++.. +++++  .++.+.+|+...+          .....+..|...|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~~~~~~~~~~~~~~~~~~~----------~~~~~~~~h~~~v  162 (325)
T d1pgua1          94 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR-LCVVGEGRDNFGVFISWDSG----------NSLGEVSGHSQRI  162 (325)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSE-EEEEECCSSCSEEEEETTTC----------CEEEECCSCSSCE
T ss_pred             ecCCcceeeeecccccccccccCcEEEEEECCCCCc-cceeeccccceEEEEeeccc----------ccceeeeeccccc
Confidence            86532        22345678899999999999774 55444  4778999998743          3555667899999


Q ss_pred             EEEEEccCCCE-EEEEeCCCcEEEEeCCCCceEEEEe---ccCCCeEEEEEccC-CCEEEEeeCCCcEEEEeCCCCceeE
Q 004214          384 NSLAVAPNDSL-VCTGSQDRTACVWRLPDLVSVVTFR---GHKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLK  458 (768)
Q Consensus       384 ~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~v~~s~~-~~~l~t~~~d~~i~iwd~~~~~~~~  458 (768)
                      ++++|+|++.. +++++.|+.+++||..+.+....+.   +|...|++++|+|+ +.+|++++.|+.|++||+++++++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~  242 (325)
T d1pgua1         163 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK  242 (325)
T ss_dssp             EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred             ccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccc
Confidence            99999998875 6789999999999999887766654   46678999999997 6899999999999999999999999


Q ss_pred             EeecCCCcEEEEEEE---eCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCc--EEEEEEcCC-CCEEEEEeCCCcEEE
Q 004214          459 TFEGHTSSVLRASFL---TRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK--IWALAVGKK-TEMFATGGSDALVNL  532 (768)
Q Consensus       459 ~~~~~~~~v~~~~~s---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~l~~s~~-~~~l~s~~~dg~v~v  532 (768)
                      .+.+|..++..+.|+   |+|++|++++.||.|+|||+.+++++..+..|...  +..+++.+. +.+|++++.||.|++
T Consensus       243 ~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~v  322 (325)
T d1pgua1         243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF  322 (325)
T ss_dssp             ECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEE
T ss_pred             cccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEE
Confidence            999999888777776   78999999999999999999999999988765543  333444332 347899999999999


Q ss_pred             EEc
Q 004214          533 WHD  535 (768)
Q Consensus       533 w~~  535 (768)
                      |++
T Consensus       323 wdl  325 (325)
T d1pgua1         323 YEL  325 (325)
T ss_dssp             EET
T ss_pred             EEC
Confidence            985

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.4e-30  Score=260.37  Aligned_cols=271  Identities=17%  Similarity=0.246  Sum_probs=207.1

Q ss_pred             CEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEE
Q 004214           20 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN   99 (768)
Q Consensus        20 ~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~   99 (768)
                      .+.+++|+||.+.|++|+|+|      |+||+.||+|++||+.++.     .+|...|.+++|++++ .+++++.|++++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~-~~~s~s~D~~v~   70 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP------LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQ-EYSSISWDDTLK   70 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT------TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTT-CCEEEETTTEEE
T ss_pred             cceeEEECCCCCceEEEEECc------EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCC-eEEEEeeccccc
Confidence            467889999999999999986      8999999999999987643     5799999999998764 678999999999


Q ss_pred             EEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCc
Q 004214          100 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD  179 (768)
Q Consensus       100 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~  179 (768)
                      +|++...+.                                                                       
T Consensus        71 ~w~~~~~~~-----------------------------------------------------------------------   79 (287)
T d1pgua2          71 VNGITKHEF-----------------------------------------------------------------------   79 (287)
T ss_dssp             ETTEEEEEC-----------------------------------------------------------------------
T ss_pred             ccccccccc-----------------------------------------------------------------------
Confidence            997532110                                                                       


Q ss_pred             eeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEe
Q 004214          180 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT  259 (768)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  259 (768)
                                                                                                      
T Consensus        80 --------------------------------------------------------------------------------   79 (287)
T d1pgua2          80 --------------------------------------------------------------------------------   79 (287)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCC
Q 004214          260 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL  339 (768)
Q Consensus       260 ~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  339 (768)
                                            ...+.++   ...+++. ++..+.++.+.+|+..++..+..+..+. ++  .++++++
T Consensus        80 ----------------------~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~  130 (287)
T d1pgua2          80 ----------------------GSQPKVA---SANNDGF-TAVLTNDDDLLILQSFTGDIIKSVRLNS-PG--SAVSLSQ  130 (287)
T ss_dssp             ----------------------SSCEEEE---EECSSSE-EEEEETTSEEEEEETTTCCEEEEEECSS-CE--EEEEECS
T ss_pred             ----------------------ccceeee---eeccCCc-eEEEeecccceeeeccceeeeeeccccc-ee--eeeeccC
Confidence                                  0001111   1122333 3334456667788888877777665433 33  3456665


Q ss_pred             CcEEEEEeCC-CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEE-E
Q 004214          340 QNFLVSGSSD-HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV-T  417 (768)
Q Consensus       340 ~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~-~  417 (768)
                      . .+++++.+ +.+++|++...         .........|...+++++|+|++.+|++|+.||.|++||+.++.... .
T Consensus       131 ~-~~~v~~~~~~~v~~~~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~  200 (287)
T d1pgua2         131 N-YVAVGLEEGNTIQVFKLSDL---------EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR  200 (287)
T ss_dssp             S-EEEEEETTTSCEEEEETTEE---------EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC
T ss_pred             c-ceeeeccccceeeeeecccc---------ceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccc
Confidence            5 45556555 57999998632         11222234577889999999999999999999999999999887655 3


Q ss_pred             EeccCCCeEEEEEccC----------CCEEEEeeCCCcEEEEeCCC-CceeEEeecCCCcEEEEEEEeCCCEEEEEeCCC
Q 004214          418 FRGHKRGIWSVEFSPV----------DQVVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG  486 (768)
Q Consensus       418 ~~~~~~~v~~v~~s~~----------~~~l~t~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  486 (768)
                      +.+|..+|.+++|+|.          +.++++|+.|++|+|||+.+ ++++..+.+|...|++++|+|++ .|++++.||
T Consensus       201 ~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~  279 (287)
T d1pgua2         201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADA  279 (287)
T ss_dssp             SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTS
T ss_pred             ccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCC
Confidence            6789999999999875          46899999999999999977 56778888999999999999986 689999999


Q ss_pred             cEEEEEC
Q 004214          487 LVKLWTV  493 (768)
Q Consensus       487 ~i~iwd~  493 (768)
                      .|++|++
T Consensus       280 ~v~iW~i  286 (287)
T d1pgua2         280 CIKRWNV  286 (287)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            9999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4e-30  Score=269.37  Aligned_cols=300  Identities=19%  Similarity=0.253  Sum_probs=219.4

Q ss_pred             EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCcee------eeeeeCCccceEEEee---e-eecCCCEEE
Q 004214          231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC------SYVLAGHSEIVLCLDT---C-ALSSGKILI  300 (768)
Q Consensus       231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~------~~~~~~~~~~v~~l~~---~-~~~~~~~~l  300 (768)
                      ......+|.+.|.++++.   ++++++++.|+.|++||..+...      ......|...+..+..   . .......++
T Consensus         6 ~~~~~~~H~~~I~~v~~~---~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (393)
T d1sq9a_           6 TANAGKAHDADIFSVSAC---NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   82 (393)
T ss_dssp             EEEESSCSSSCEEEEEEC---SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             eeecCCcccCccEEEEEe---CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEE
Confidence            345567999999999975   36899999999999999765432      1222334333322211   0 112233468


Q ss_pred             EEEeCCCeEEEEeCCCceE----EE-e-----eecccCcEEEEEEecCC----CcEEEEEeCCCeEEEEeCCCCCCCCcc
Q 004214          301 VTGSKDNSVRLWDSESRCC----VG-V-----GTGHMGAVGAVAFSKKL----QNFLVSGSSDHTIKVWSFDGLSDDAEQ  366 (768)
Q Consensus       301 ~~~~~dg~i~iwd~~~~~~----~~-~-----~~~~~~~v~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~  366 (768)
                      ++++.||.|++|++.....    .. .     ...+...+..+++.++.    ..++++++.||++++|++.........
T Consensus        83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence            8999999999998653211    11 1     12355667888887764    257899999999999998643211100


Q ss_pred             cc-----c---cceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEE------eccCCCeEEEEEcc
Q 004214          367 PM-----N---LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF------RGHKRGIWSVEFSP  432 (768)
Q Consensus       367 ~~-----~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~v~~v~~s~  432 (768)
                      ..     .   .........+...+.+++|+|++ +|++|+.||+|++||+.+++++..+      .+|..+|++++|+|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc
Confidence            00     0   01111223355668999999997 8899999999999999998877654      46889999999999


Q ss_pred             CCCEEEEeeCCCc---EEEEeCCCCceeEEee-------------cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC
Q 004214          433 VDQVVITASGDKT---IKIWSISDGSCLKTFE-------------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG  496 (768)
Q Consensus       433 ~~~~l~t~~~d~~---i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  496 (768)
                      +|++|++|+.|++   |++||+.+++++..+.             +|...|++++|+|++++|++|+.||+|++||+.+|
T Consensus       242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence            9999999998874   9999999999888774             79999999999999999999999999999999999


Q ss_pred             eEEEEeccCCCc---------------------EEEEEEcCCC----------CEEEEEeCCCcEEEEE
Q 004214          497 ECIATYDKHEDK---------------------IWALAVGKKT----------EMFATGGSDALVNLWH  534 (768)
Q Consensus       497 ~~~~~~~~~~~~---------------------v~~l~~s~~~----------~~l~s~~~dg~v~vw~  534 (768)
                      +++.++.+|.+.                     ++++.|.+.+          +.+++++.|+.|++|+
T Consensus       322 ~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         322 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             CEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence            999999988654                     4455554432          3467777777777775

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.4e-29  Score=249.45  Aligned_cols=274  Identities=27%  Similarity=0.547  Sum_probs=230.0

Q ss_pred             ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC
Q 004214          235 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS  314 (768)
Q Consensus       235 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~  314 (768)
                      ...+...|.++.|   ++++|++|+.||.|++||+.+++++..+.+|...|.+++  +  ++. +|++|+.||.|++|++
T Consensus        11 ~~~~~~~V~c~~~---d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~--~--~~~-~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2          11 RSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ--Y--DER-VIITGSSDSTVRVWDV   82 (293)
T ss_dssp             CCSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEE--C--CSS-EEEEEETTSCEEEEES
T ss_pred             cCCCCCCEEEEEE---cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeee--c--ccc-eeeccccccccccccc
Confidence            3456677888765   678999999999999999999999999999999999986  3  344 5999999999999999


Q ss_pred             CCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE
Q 004214          315 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL  394 (768)
Q Consensus       315 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  394 (768)
                      ..+........+........  +. ...++++..++.+.+|+.....       ..........|...+..+.+.  ...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~--~~~  150 (293)
T d1p22a2          83 NTGEMLNTLIHHCEAVLHLR--FN-NGMMVTCSKDRSIAVWDMASPT-------DITLRRVLVGHRAAVNVVDFD--DKY  150 (293)
T ss_dssp             SSCCEEEEECCCCSCEEEEE--CC-TTEEEEEETTSCEEEEECSSSS-------CCEEEEEECCCSSCEEEEEEE--TTE
T ss_pred             cccccccccccccccccccc--cc-ccceeecccccceeEeeccccc-------cccccccccccccccccceec--ccc
Confidence            99888777766555544433  33 2368999999999999987543       222344556677888777765  457


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEe
Q 004214          395 VCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT  474 (768)
Q Consensus       395 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  474 (768)
                      +++++.|+.+++||+.+++.+..+.++...+..+.++  +..+++++.||.|++||++++..+..+.+|...+..  +++
T Consensus       151 ~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~  226 (293)
T d1p22a2         151 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRF  226 (293)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EEC
T ss_pred             cccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccc
Confidence            8899999999999999999999999999999888776  678999999999999999999999999999988864  567


Q ss_pred             CCCEEEEEeCCCcEEEEECCC---------CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004214          475 RGAQIVSCGADGLVKLWTVRT---------GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH  534 (768)
Q Consensus       475 ~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~  534 (768)
                      ++.+|++|+.||.|++||+.+         ..++..+.+|.+.|++++|  ++.+|++||.||.|++||
T Consensus       227 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         227 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             cceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            889999999999999999753         3578889999999999999  467899999999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-29  Score=252.61  Aligned_cols=286  Identities=25%  Similarity=0.427  Sum_probs=217.6

Q ss_pred             EEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 004214           23 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD  102 (768)
Q Consensus        23 ~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd  102 (768)
                      ++.+.+|...|+|++|  ||++  ||||+.||+|+|||+.+++++.++.+|.+.|++++|  ++++|++++.|+.|++|+
T Consensus         8 i~~~~~~~~~V~c~~~--d~~~--l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~   81 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQK--IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD   81 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSSE--EEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEE
T ss_pred             EeccCCCCCCEEEEEE--cCCE--EEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccc
Confidence            4556678999998765  6676  999999999999999999999999999999999887  578999999999999999


Q ss_pred             CCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceee
Q 004214          103 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI  182 (768)
Q Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~  182 (768)
                      +..+....................                        ..++++..++.+.+|+......          
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~----------  127 (293)
T d1p22a2          82 VNTGEMLNTLIHHCEAVLHLRFNN------------------------GMMVTCSKDRSIAVWDMASPTD----------  127 (293)
T ss_dssp             SSSCCEEEEECCCCSCEEEEECCT------------------------TEEEEEETTSCEEEEECSSSSC----------
T ss_pred             cccccccccccccccccccccccc------------------------cceeecccccceeEeecccccc----------
Confidence            998876655543332222111111                        1456666666666666554411          


Q ss_pred             cccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004214          183 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE  262 (768)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~  262 (768)
                                                                    .........+...+..+.+.   ...+++++.|+
T Consensus       128 ----------------------------------------------~~~~~~~~~~~~~v~~~~~~---~~~~~~~s~d~  158 (293)
T d1p22a2         128 ----------------------------------------------ITLRRVLVGHRAAVNVVDFD---DKYIVSASGDR  158 (293)
T ss_dssp             ----------------------------------------------CEEEEEECCCSSCEEEEEEE---TTEEEEEETTS
T ss_pred             ----------------------------------------------ccccccccccccccccceec---ccccccccCCC
Confidence                                                          11112233445555555553   45788899999


Q ss_pred             cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcE
Q 004214          263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF  342 (768)
Q Consensus       263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  342 (768)
                      .+++||..+++.+..+.++...+..+.  +  .+. .+++++.||.|++||+.+...+....+|...+..+..  + ..+
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~v~~~~--~--~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~-~~~  230 (293)
T d1p22a2         159 TIKVWNTSTCEFVRTLNGHKRGIACLQ--Y--RDR-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--D-NKR  230 (293)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEE--E--ETT-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--C-SSE
T ss_pred             ceeeecCCCCcEEEEEccccccccccc--C--CCC-eEEEecCCCEEEEEecccceeeeeecccceeeeeccc--c-ceE
Confidence            999999999999999999999988875  3  234 4999999999999999999999999999998876544  4 338


Q ss_pred             EEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 004214          343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR  408 (768)
Q Consensus       343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d  408 (768)
                      |++++.||.|++||+........ .........+.+|...|++++|+  +.+|++|+.||+|++||
T Consensus       231 l~sg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         231 IVSGAYDGKIKVWDLVAALDPRA-PAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEEETTSCEEEEEHHHHTSTTS-CTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             EEEEcCCCEEEEEECCCCccccc-cCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            99999999999999865432221 11334556678899999999985  57899999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-29  Score=252.40  Aligned_cols=268  Identities=16%  Similarity=0.174  Sum_probs=216.0

Q ss_pred             EEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEE
Q 004214          231 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR  310 (768)
Q Consensus       231 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~  310 (768)
                      +.+.+.||..+|.+++|++     |++|+.||.|++||+.++     ..+|...|.++.  +. ++.. +++++.|++++
T Consensus         5 ~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~--~~-~~~~-~~s~s~D~~v~   70 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLD--NS-KAQE-YSSISWDDTLK   70 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEE--CC-STTC-CEEEETTTEEE
T ss_pred             eeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEE--ec-CCCe-EEEEeeccccc
Confidence            4567889999999999964     899999999999998764     357999999996  43 4454 89999999999


Q ss_pred             EEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEcc
Q 004214          311 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP  390 (768)
Q Consensus       311 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  390 (768)
                      +|+....+       ....+..+++.+++.  ++..+.++.+.+|+.....          ...... +..  ...+++|
T Consensus        71 ~w~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~--~~~~~~~  128 (287)
T d1pgua2          71 VNGITKHE-------FGSQPKVASANNDGF--TAVLTNDDDLLILQSFTGD----------IIKSVR-LNS--PGSAVSL  128 (287)
T ss_dssp             ETTEEEEE-------CSSCEEEEEECSSSE--EEEEETTSEEEEEETTTCC----------EEEEEE-CSS--CEEEEEE
T ss_pred             cccccccc-------cccceeeeeeccCCc--eEEEeecccceeeecccee----------eeeecc-ccc--eeeeeec
Confidence            99875422       334567788888754  4555667778888876432          222222 222  3456778


Q ss_pred             CCCEEEEEeCCC-cEEEEeCCCCceEEEEe-ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeE-EeecCCCcE
Q 004214          391 NDSLVCTGSQDR-TACVWRLPDLVSVVTFR-GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK-TFEGHTSSV  467 (768)
Q Consensus       391 ~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~-~~~~~~~~v  467 (768)
                      ++..+++++.++ .+++|++........+. .|..++++++|+|++.+|++|+.||.|++||+.++.... .+.+|..+|
T Consensus       129 ~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v  208 (287)
T d1pgua2         129 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI  208 (287)
T ss_dssp             CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE
T ss_pred             cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccccccc
Confidence            888888888875 79999998776655554 477889999999999999999999999999999988654 467899999


Q ss_pred             EEEEEEeC----------CCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 004214          468 LRASFLTR----------GAQIVSCGADGLVKLWTVRT-GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD  535 (768)
Q Consensus       468 ~~~~~s~~----------~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~  535 (768)
                      ++++|+|.          +.+|++|+.||.|++||+.+ ++.+..+.+|...|++++|+|++ .|+++|.||.|++|++
T Consensus       209 ~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             ceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            99999875          46899999999999999977 56788888999999999999986 6899999999999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.4e-29  Score=262.26  Aligned_cols=152  Identities=13%  Similarity=0.240  Sum_probs=125.7

Q ss_pred             cccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCc-
Q 004214          325 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT-  403 (768)
Q Consensus       325 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-  403 (768)
                      .+...+.+++|+|++  ++++|+.||+|++||+..+...    ..........+|..+|++++|+|+|++|++|+.|++ 
T Consensus       182 ~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~----~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~  255 (393)
T d1sq9a_         182 TPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPL----YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF  255 (393)
T ss_dssp             SSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEE----EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTE
T ss_pred             CCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccc----cccccccccccccceEEEcccccccceeeeecCCCCc
Confidence            455668899999985  7999999999999999854211    122233445679999999999999999999999875 


Q ss_pred             --EEEEeCCCCceEEEEe-------------ccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEE
Q 004214          404 --ACVWRLPDLVSVVTFR-------------GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL  468 (768)
Q Consensus       404 --i~i~d~~~~~~~~~~~-------------~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  468 (768)
                        |++||+.+++.+..+.             +|...|++++|+|++++|++|+.|++|+|||+.+++++.++.+|...|.
T Consensus       256 ~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         256 GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE  335 (393)
T ss_dssp             EEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred             ceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCccc
Confidence              8999999998887764             7999999999999999999999999999999999999999999987764


Q ss_pred             ----EEEEEeCCCEEEEE
Q 004214          469 ----RASFLTRGAQIVSC  482 (768)
Q Consensus       469 ----~~~~s~~~~~l~s~  482 (768)
                          .++|+|++..++++
T Consensus       336 ~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         336 IEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             SGGGCCCBCTTSCBCSSC
T ss_pred             CCccEEEECCCCCEEEEc
Confidence                36777777766544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.97  E-value=4.1e-29  Score=263.40  Aligned_cols=361  Identities=12%  Similarity=0.023  Sum_probs=265.6

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCee--EEE---ecCccce
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC--VAT---LDKHFSR   76 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~--~~~---l~~h~~~   76 (768)
                      ++++.+.+|+|.|||..+++++..+..|. .+..++|||||++  +++++.||+|++||+.+++.  +..   ..+|.+.
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~--l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~  110 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRY--LFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI  110 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCE--EEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCE--EEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence            46899999999999999999999999774 6999999999998  88999999999999988763  233   3457778


Q ss_pred             eEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeeeeecceeE-eeEEecCCCCCccccccccchhhhhcccCCcceEEE
Q 004214           77 VTSMAITSDGSTL-ISAGRDKVVNLWDLRDYSCKLTVPTYEMV-EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI  154 (768)
Q Consensus        77 V~~l~fs~d~~~L-~s~~~dg~i~vWd~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (768)
                      +.+..|+|||++| ++++.++.|++||..+++++..+..+... ....+.                              
T Consensus       111 ~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~------------------------------  160 (432)
T d1qksa2         111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH------------------------------  160 (432)
T ss_dssp             EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE------------------------------
T ss_pred             EEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceecc------------------------------
Confidence            8888899999987 67788999999999999887776543220 001111                              


Q ss_pred             EeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEee
Q 004214          155 TVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKR  234 (768)
Q Consensus       155 ~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~  234 (768)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (432)
T d1qksa2         161 --------------------------------------------------------------------------------  160 (432)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee-CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214          235 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD  313 (768)
Q Consensus       235 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd  313 (768)
                         .......+.+++++..++++...++.|.+|+..+.+...... .+...+.++.  +.++++.+++++..++.+.++|
T Consensus       161 ---~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~--~spdg~~~~va~~~~~~v~v~d  235 (432)
T d1qksa2         161 ---PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGG--LDGSHRYFITAANARNKLVVID  235 (432)
T ss_dssp             ---SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEE--ECTTSCEEEEEEGGGTEEEEEE
T ss_pred             ---CCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccce--ECCCCCEEEEeccccceEEEee
Confidence               112233344554444455566667889999988776544333 2345566776  8888888667777778999999


Q ss_pred             CCCceEEEeeec-----ccCcEEEEEEecCCCcEEEEE-eCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEE
Q 004214          314 SESRCCVGVGTG-----HMGAVGAVAFSKKLQNFLVSG-SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA  387 (768)
Q Consensus       314 ~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  387 (768)
                      ..+++.......     |........+...+. ...+. ..++.|.+|+.....              ...|...+....
T Consensus       236 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~-~~~~~~lg~~~v~~~~~~~~~--------------~~~~~~~v~~~~  300 (432)
T d1qksa2         236 TKEGKLVAIEDTGGQTPHPGRGANFVHPTFGP-VWATSHMGDDSVALIGTDPEG--------------HPDNAWKILDSF  300 (432)
T ss_dssp             TTTTEEEEEEECSSSSBCCTTCEEEEETTTEE-EEEEEBSSSSEEEEEECCTTT--------------CTTTBTSEEEEE
T ss_pred             cccceEEEEeccCccccccCcccceecCCCCc-eecccccCCceEEeccccccc--------------ccccccEEEEEE
Confidence            999888776542     333444444444333 33333 348899999865321              123556788899


Q ss_pred             EccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcE
Q 004214          388 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV  467 (768)
Q Consensus       388 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v  467 (768)
                      ++|++..+++++.+++.++|+..+..      .|.....++++ ||++.+++++.|+.+++|++.++..+   ..|...+
T Consensus       301 ~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v  370 (432)
T d1qksa2         301 PALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI---TEGQPRV  370 (432)
T ss_dssp             ECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC---CSSCCEE
T ss_pred             EcCCCCeEEEEecCCccceeecccCC------CCCCeeeEEEE-EechhhcccccCCceEeccccccccc---CCCCCcE
Confidence            99999999999999999999865532      24333445555 89999999999999999998655433   3577789


Q ss_pred             EEEEEEeCCCEEEEEe-----CCCcEEEEECCCCeEEEEeccC
Q 004214          468 LRASFLTRGAQIVSCG-----ADGLVKLWTVRTGECIATYDKH  505 (768)
Q Consensus       468 ~~~~~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~  505 (768)
                      ..++|+|||++++.+.     .+|.|.|||.++++....+.+.
T Consensus       371 ~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         371 VQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  413 (432)
T ss_dssp             EEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             EEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence            9999999999886553     4688999999999998888754

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.5e-29  Score=257.20  Aligned_cols=313  Identities=14%  Similarity=0.141  Sum_probs=228.7

Q ss_pred             eeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhc
Q 004214           65 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKK  144 (768)
Q Consensus        65 ~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (768)
                      +.+...++|...|++|+|+|++++|++++.||+|++||+.++.....                                 
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~---------------------------------   48 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD---------------------------------   48 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE---------------------------------
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceE---------------------------------
Confidence            56777889999999999999999999999999999999865321100                                 


Q ss_pred             ccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcc
Q 004214          145 KRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPE  224 (768)
Q Consensus       145 ~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~  224 (768)
                                                                                                      
T Consensus        49 --------------------------------------------------------------------------------   48 (342)
T d1yfqa_          49 --------------------------------------------------------------------------------   48 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEe
Q 004214          225 KKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS  304 (768)
Q Consensus       225 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~  304 (768)
                             .....+|..+|.+++|+++++.++++|+.|+.|++|+............+......... ..+... .+++++
T Consensus        49 -------~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~  119 (342)
T d1yfqa_          49 -------LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRI-CKYGDD-KLIAAS  119 (342)
T ss_dssp             -------EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEE-EEETTT-EEEEEE
T ss_pred             -------EEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccc-cccccc-cccccc
Confidence                   11223577789999999888889999999999999999988877776665554443331 333444 499999


Q ss_pred             CCCeEEEEeCCCce----EEEeeecc--cCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec
Q 004214          305 KDNSVRLWDSESRC----CVGVGTGH--MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA  378 (768)
Q Consensus       305 ~dg~i~iwd~~~~~----~~~~~~~~--~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  378 (768)
                      .++.+++||++.+.    .......+  ........+.+.+. .+++++.|+.|++|++.......       .......
T Consensus       120 ~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~  191 (342)
T d1yfqa_         120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS-RLIVGMNNSQVQWFRLPLCEDDN-------GTIEESG  191 (342)
T ss_dssp             TTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS-EEEEEESTTEEEEEESSCCTTCC-------CEEEECS
T ss_pred             cccccceeeccccccceeeecccccccccceeeeeeeeccCC-ceeeecCCCcEEEEecccCcccc-------eeeeecc
Confidence            99999999976432    22222222  22334555666644 79999999999999997653211       2222233


Q ss_pred             cCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCce------EEE---------EeccCCCeEEEEEccCCCEEEEeeC
Q 004214          379 HGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVS------VVT---------FRGHKRGIWSVEFSPVDQVVITASG  442 (768)
Q Consensus       379 ~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~------~~~---------~~~~~~~v~~v~~s~~~~~l~t~~~  442 (768)
                      +...+.+..+.+ ++..+++++.||.+.+|+......      ...         ..+|...|++++|+|++++|++|+.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~  271 (342)
T d1yfqa_         192 LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS  271 (342)
T ss_dssp             CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET
T ss_pred             cccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECC
Confidence            445556666555 678999999999999999764321      111         1246678999999999999999999


Q ss_pred             CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEE
Q 004214          443 DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL  512 (768)
Q Consensus       443 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l  512 (768)
                      ||.|++||+.+++++.++..+ ..+..++|+|+|++|++++.|+.+++|....    .++..|...|..+
T Consensus       272 Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~----~~~~~~~~~i~~~  336 (342)
T d1yfqa_         272 DGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAID----QTIELNASSIYII  336 (342)
T ss_dssp             TSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSSSC----TTSCCCCCEEEEE
T ss_pred             CCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeeeeC----CCccCCCCeEEEE
Confidence            999999999999999988743 3455688999999999999999888886432    2344566666644

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=8e-28  Score=254.36  Aligned_cols=351  Identities=13%  Similarity=0.055  Sum_probs=244.1

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEE-----ecCccce
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT-----LDKHFSR   76 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~-----l~~h~~~   76 (768)
                      ++|+...||.|+|||..+++++.++..|. .+..++|||||++  +++++.|++|++||+.+++....     ..+|.+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~--l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~  110 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRY--LLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV  110 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCE--EEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCE--EEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcce
Confidence            56889999999999999999999999875 5899999999998  89999999999999998875432     2367778


Q ss_pred             eEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeeeeeccee-EeeEEecCCCCCccccccccchhhhhcccCCcceEEE
Q 004214           77 VTSMAITSDGSTLISA-GRDKVVNLWDLRDYSCKLTVPTYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI  154 (768)
Q Consensus        77 V~~l~fs~d~~~L~s~-~~dg~i~vWd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (768)
                      +.+++|+|||++|+++ ..++.+.+||..++.+......+.. +....+.+.+.                          
T Consensus       111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------  164 (426)
T d1hzua2         111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR--------------------------  164 (426)
T ss_dssp             EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC--------------------------
T ss_pred             EEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCc--------------------------
Confidence            8889999999997554 5789999999999887776654332 11122222111                          


Q ss_pred             EeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEee
Q 004214          155 TVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKR  234 (768)
Q Consensus       155 ~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~  234 (768)
                                                                                                      
T Consensus       165 --------------------------------------------------------------------------------  164 (426)
T d1hzua2         165 --------------------------------------------------------------------------------  164 (426)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeee-eeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEe
Q 004214          235 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY-VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD  313 (768)
Q Consensus       235 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd  313 (768)
                             ...+.++++....+......+.+.+++........ ....+...+..+.  +.++++.++++...+..+.+++
T Consensus       165 -------~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~a~~~~~~~~~~~  235 (426)
T d1hzua2         165 -------VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGG--WDSSHRYFMTAANNSNKVAVID  235 (426)
T ss_dssp             -------EEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEE--ECTTSCEEEEEETTCSEEEEEE
T ss_pred             -------eeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeee--ECCCCcEEEeeeecccceeeee
Confidence                   01111111111111112223444444444433221 2334556667776  8888888777777888999999


Q ss_pred             CCCceEEEeeecc--cCcEEEEEEecCCCcE--EEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214          314 SESRCCVGVGTGH--MGAVGAVAFSKKLQNF--LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA  389 (768)
Q Consensus       314 ~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  389 (768)
                      ..+++.+......  ........+.+.+...  .++.+.|+.+.+|+........   ...+....+.+|...+..++|+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~---~~~~~~~~l~g~~~~v~~v~~s  312 (426)
T d1hzua2         236 SKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ---YAWKKVAELQGQGGGSLFIKTH  312 (426)
T ss_dssp             TTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTT---TBTSEEEEEECSSSCCCCEECC
T ss_pred             cccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccccc---ccceEeEEEecCCCceeEEEcC
Confidence            9999888766532  2222334443333322  3344568899999876442211   2334566778899999999999


Q ss_pred             cCCCEEEE-------EeCCCcEEEEeCCCCceEEEEe---------ccCCCeEEEEEccCCCEEEEe-----eCCCcEEE
Q 004214          390 PNDSLVCT-------GSQDRTACVWRLPDLVSVVTFR---------GHKRGIWSVEFSPVDQVVITA-----SGDKTIKI  448 (768)
Q Consensus       390 ~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~---------~~~~~v~~v~~s~~~~~l~t~-----~~d~~i~i  448 (768)
                      |++++|++       +..+++|++||+.+++...++.         .|...|.+++|||||++++.+     +.++.|+|
T Consensus       313 Pdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v  392 (426)
T d1hzua2         313 PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVV  392 (426)
T ss_dssp             TTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEE
T ss_pred             CCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEE
Confidence            99999995       4557899999999988766543         355679999999999977543     35788999


Q ss_pred             EeCCCCceeEEeecCCCcEEEEEEEeCCCEE
Q 004214          449 WSISDGSCLKTFEGHTSSVLRASFLTRGAQI  479 (768)
Q Consensus       449 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  479 (768)
                      ||.++++....+.++.      .++|+|+|-
T Consensus       393 ~D~~T~k~~~~i~~~~------~~tp~Gk~~  417 (426)
T d1hzua2         393 VDDKTLKLKAVVKDPR------LITPTGKFN  417 (426)
T ss_dssp             EETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred             EECCCCeEEEEECCCC------ccCCCceEe
Confidence            9999999999998774      335777663

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=6.2e-28  Score=255.25  Aligned_cols=350  Identities=13%  Similarity=0.072  Sum_probs=235.8

Q ss_pred             EEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeee--e
Q 004214           36 ILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV--P  113 (768)
Q Consensus        36 l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~--~  113 (768)
                      +.+++|.+..++++.+.||+|+|||+.+++++.++..|. .+..++|||||++|++++.|+.|++||+.+++.....  +
T Consensus        24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~  102 (426)
T d1hzua2          24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK  102 (426)
T ss_dssp             CCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             ccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEe
Confidence            346666666678899999999999999999999999875 4899999999999999999999999999987643221  1


Q ss_pred             cceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccce
Q 004214          114 TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGF  193 (768)
Q Consensus       114 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (768)
                      ......                                                                          
T Consensus       103 ~~~~~~--------------------------------------------------------------------------  108 (426)
T d1hzua2         103 IGIEAR--------------------------------------------------------------------------  108 (426)
T ss_dssp             CCSEEE--------------------------------------------------------------------------
T ss_pred             CCCCCc--------------------------------------------------------------------------
Confidence            111111                                                                          


Q ss_pred             eEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEE-EEEeCCCcEEEEECCCc
Q 004214          194 TAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL-AVATNIEQVQVYDLSSM  272 (768)
Q Consensus       194 ~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~~~~i~i~d~~~~  272 (768)
                                                                    ..+.+++|+ ++++++ +.+..++.+.+||..++
T Consensus       109 ----------------------------------------------~~~~s~~~s-pDG~~l~v~~~~~~~v~i~d~~~~  141 (426)
T d1hzua2         109 ----------------------------------------------SVESSKFKG-YEDRYTIAGAYWPPQFAIMDGETL  141 (426)
T ss_dssp             ----------------------------------------------EEEECCSTT-CTTTEEEEEEEESSEEEEEETTTC
T ss_pred             ----------------------------------------------ceEEeeeec-CCCCEEEEeecCCCeEEEEcCCcc
Confidence                                                          112222333 355554 45557899999999999


Q ss_pred             eeeeeeeCCccceEEEe---------eeeecCCCEEEEEEeCCCeEEEEeCCCceE-EEeeecccCcEEEEEEecCCCcE
Q 004214          273 SCSYVLAGHSEIVLCLD---------TCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTGHMGAVGAVAFSKKLQNF  342 (768)
Q Consensus       273 ~~~~~~~~~~~~v~~l~---------~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~  342 (768)
                      .+...+..|...+....         ....+++..++.+....+.+.+++...... .....++...+..+.++|+++.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  221 (426)
T d1hzua2         142 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYF  221 (426)
T ss_dssp             CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEE
T ss_pred             ceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEE
Confidence            98888877665544333         012333333333333334444444443322 12233567788999999998876


Q ss_pred             EEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC-EE--EEEeCCCcEEEEeCC-------CC
Q 004214          343 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS-LV--CTGSQDRTACVWRLP-------DL  412 (768)
Q Consensus       343 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l--~~~~~dg~i~i~d~~-------~~  412 (768)
                      +++...+..+.+++........        ......+........+.+.+. .+  +..+.|+.+.+|+..       .+
T Consensus       222 ~~a~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~  293 (426)
T d1hzua2         222 MTAANNSNKVAVIDSKDRRLSA--------LVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW  293 (426)
T ss_dssp             EEEETTCSEEEEEETTTTEEEE--------EEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBT
T ss_pred             EeeeecccceeeeecccccEEE--------EeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccc
Confidence            7777778889999987542111        011111111112222222221 11  122345566666543       34


Q ss_pred             ceEEEEeccCCCeEEEEEccCCCEEEE-------eeCCCcEEEEeCCCCceeEEee---------cCCCcEEEEEEEeCC
Q 004214          413 VSVVTFRGHKRGIWSVEFSPVDQVVIT-------ASGDKTIKIWSISDGSCLKTFE---------GHTSSVLRASFLTRG  476 (768)
Q Consensus       413 ~~~~~~~~~~~~v~~v~~s~~~~~l~t-------~~~d~~i~iwd~~~~~~~~~~~---------~~~~~v~~~~~s~~~  476 (768)
                      +....+.+|...+..++|+|++++|++       ++.|++|+|||+.++++..++.         .|...|..++|||||
T Consensus       294 ~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDG  373 (426)
T d1hzua2         294 KKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG  373 (426)
T ss_dssp             SEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSS
T ss_pred             eEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCC
Confidence            778889999999999999999999995       4567899999999998776653         456679999999999


Q ss_pred             CEEEEE-----eCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEE
Q 004214          477 AQIVSC-----GADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF  521 (768)
Q Consensus       477 ~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l  521 (768)
                      ++++.+     +.+|.|+|||.++++....+.++.      .++|+|++-
T Consensus       374 k~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~  417 (426)
T d1hzua2         374 DEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN  417 (426)
T ss_dssp             SEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred             CEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEe
Confidence            987543     357889999999999999998765      345677653

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.3e-28  Score=247.90  Aligned_cols=294  Identities=16%  Similarity=0.154  Sum_probs=222.5

Q ss_pred             EeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeee---eeeCCccceEEEeeeeecCCCEEEEEEeCCCe
Q 004214          232 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY---VLAGHSEIVLCLDTCALSSGKILIVTGSKDNS  308 (768)
Q Consensus       232 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~---~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~  308 (768)
                      .....+|.+.|.+++|+| ++++|++|+.||.|++||+.++....   ...+|..+|.+++  +.++++.+|++|+.||.
T Consensus         4 v~~~~~h~d~I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~--f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN--FIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             EECSSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEE--EEESSSEEEEEEETTSC
T ss_pred             EEcCCCCCCCEEEEEEeC-CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEE--EeCCCCCEEEEcccccc
Confidence            345678899999999996 67899999999999999987654432   3346999999998  77777777999999999


Q ss_pred             EEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEee--ccCCCeEEE
Q 004214          309 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA--AHGKDINSL  386 (768)
Q Consensus       309 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~  386 (768)
                      |++|+...+........+........+.+.+...+++++.++++++||++......      .......  .........
T Consensus        81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~------~~~~~~~~~~~~~~~~~~  154 (342)
T d1yfqa_          81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGV------IAVKNLNSNNTKVKNKIF  154 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBC------EEEEESCSSSSSSCCCEE
T ss_pred             eeeeecccccccccccccccccccccccccccccccccccccccceeeccccccce------eeecccccccccceeeee
Confidence            99999998877776665555544444433335589999999999999986432111      1111111  123345567


Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCCCCceE---EEEeccCCCeEEEEEcc-CCCEEEEeeCCCcEEEEeCCCCcee-----
Q 004214          387 AVAPNDSLVCTGSQDRTACVWRLPDLVSV---VTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDGSCL-----  457 (768)
Q Consensus       387 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~v~~s~-~~~~l~t~~~d~~i~iwd~~~~~~~-----  457 (768)
                      .+.+++..+++++.|+.|++|++......   .....+...+.+..+.+ ++..+++++.||.+.+|+.......     
T Consensus       155 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~  234 (342)
T d1yfqa_         155 TMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK  234 (342)
T ss_dssp             EEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred             eeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccc
Confidence            78889999999999999999999766533   23334455566666554 5789999999999999998654221     


Q ss_pred             -E---------EeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 004214          458 -K---------TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD  527 (768)
Q Consensus       458 -~---------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~d  527 (768)
                       .         ...+|...+++++|+|++++|++|+.||.|++||+.+++++.++..+ ..+..++|+|++++|++++.|
T Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sd  313 (342)
T d1yfqa_         235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSD  313 (342)
T ss_dssp             CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEEC
T ss_pred             cceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcC
Confidence             1         12357778999999999999999999999999999999999988643 344567788899999999989


Q ss_pred             CcEEEEEc
Q 004214          528 ALVNLWHD  535 (768)
Q Consensus       528 g~v~vw~~  535 (768)
                      +.+++|..
T Consensus       314 d~~~~~~~  321 (342)
T d1yfqa_         314 DTFKTNAA  321 (342)
T ss_dssp             THHHHCSS
T ss_pred             CcEEEeee
Confidence            88777754

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=2.6e-28  Score=252.21  Aligned_cols=332  Identities=12%  Similarity=0.055  Sum_probs=245.6

Q ss_pred             EEEEee-CCCccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeee
Q 004214           35 SILFHP-DTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK--VVNLWDLRDYSCKLT  111 (768)
Q Consensus        35 ~l~~sp-d~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg--~i~vWd~~~~~~~~~  111 (768)
                      +-.||| ||++  +|+++ +|.|++||+.++..+..  +|...|.+++|+|||++|++++.+.  .|++||+.+++....
T Consensus         7 ~~~fSP~dG~~--~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~   81 (360)
T d1k32a3           7 AEDFSPLDGDL--IAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF   81 (360)
T ss_dssp             EEEEEECGGGC--EEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred             cccccCCCCCE--EEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEe
Confidence            356999 9998  77765 57999999988877653  6999999999999999999877553  788999877643222


Q ss_pred             eecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCccc
Q 004214          112 VPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKR  191 (768)
Q Consensus       112 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  191 (768)
                                                                                                      
T Consensus        82 --------------------------------------------------------------------------------   81 (360)
T d1k32a3          82 --------------------------------------------------------------------------------   81 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 004214          192 GFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS  271 (768)
Q Consensus       192 ~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~  271 (768)
                                                                  ..+...+.+++|++ +++++++++.++.+++|+..+
T Consensus        82 --------------------------------------------~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~  116 (360)
T d1k32a3          82 --------------------------------------------EENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLET  116 (360)
T ss_dssp             --------------------------------------------CCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred             --------------------------------------------eCCCceEEeeeecc-cccccceeccccccccccccc
Confidence                                                        23445566777764 677888888889999999999


Q ss_pred             ceeeeeeeCCccceEEEeeeeecCCCEEEEEE----------eCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCc
Q 004214          272 MSCSYVLAGHSEIVLCLDTCALSSGKILIVTG----------SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN  341 (768)
Q Consensus       272 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~----------~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  341 (768)
                      +.....+..|...+.+++  +.+++.. |+.+          ..++.+++|+..+++.... ..+...+..++|+|+|+ 
T Consensus       117 ~~~~~~~~~~~~~~~~~~--~spdg~~-la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~-  191 (360)
T d1k32a3         117 GKPTVIERSREAMITDFT--ISDNSRF-IAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTENSHDYAPAFDADSK-  191 (360)
T ss_dssp             CCEEEEEECSSSCCCCEE--ECTTSCE-EEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SCSSSBEEEEEECTTSC-
T ss_pred             cceeeeeecccccccchh--hccceee-eeeeccccccceeeccccceeeeccccCceeee-cccccccccccccCCCC-
Confidence            888888888888888887  7777776 5433          2345799999999876654 45677889999999977 


Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCc-----EEEEeCCCCceEE
Q 004214          342 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT-----ACVWRLPDLVSVV  416 (768)
Q Consensus       342 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-----i~i~d~~~~~~~~  416 (768)
                      .|++++.++.+.+|+.........   ..........+...+..+.++|++..++++..+..     +..++...+.. .
T Consensus       192 ~l~~~s~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  267 (360)
T d1k32a3         192 NLYYLSYRSLDPSPDRVVLNFSFE---VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY-R  267 (360)
T ss_dssp             EEEEEESCCCCCEECSSSSCEECC---SCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCE-E
T ss_pred             EEEEEeCCCceEcccccccceeec---cccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCce-e
Confidence            789999999999999764321110   11122333445666667778888877776654432     44444444433 3


Q ss_pred             EEeccCCCeEEEEEccCC---CEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEEC
Q 004214          417 TFRGHKRGIWSVEFSPVD---QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV  493 (768)
Q Consensus       417 ~~~~~~~~v~~v~~s~~~---~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  493 (768)
                      .+..+...+..+.+.+.+   .++++++.++.|++||+.+++..    .|.+.|.+++|+|||++|++++.||.|++||+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~  343 (360)
T d1k32a3         268 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL  343 (360)
T ss_dssp             EEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEES
T ss_pred             EeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEEC
Confidence            344556666666665544   46788889999999999887643    34456899999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCcE
Q 004214          494 RTGECIATYDKHEDKI  509 (768)
Q Consensus       494 ~~~~~~~~~~~~~~~v  509 (768)
                      .+++...++..+..++
T Consensus       344 ~~~~~~~~~~~d~~~~  359 (360)
T d1k32a3         344 EKPEDERTVETDKRPL  359 (360)
T ss_dssp             SCTTSCEECCCCSSCE
T ss_pred             CCCCcceEEEeccccc
Confidence            9998888877665554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=2.8e-26  Score=241.52  Aligned_cols=354  Identities=11%  Similarity=0.013  Sum_probs=245.4

Q ss_pred             CccEEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--eeeecceeEee
Q 004214           43 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCK--LTVPTYEMVEA  120 (768)
Q Consensus        43 ~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~--~~~~~~~~v~~  120 (768)
                      ...++++.+.||+|.|||..+++++..+..|. .+..++|||||++|++++.|+.|++||+.+++..  ..++.......
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~  109 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  109 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence            44557999999999999999999999998775 5999999999999999999999999999887532  23332222222


Q ss_pred             EEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEcc
Q 004214          121 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLP  200 (768)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (768)
                      +.+++                                                                           
T Consensus       110 ~~~s~---------------------------------------------------------------------------  114 (432)
T d1qksa2         110 IETSK---------------------------------------------------------------------------  114 (432)
T ss_dssp             EEECC---------------------------------------------------------------------------
T ss_pred             eEEec---------------------------------------------------------------------------
Confidence            22111                                                                           


Q ss_pred             CCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCE-EEEEeCCCcEEEEECCCceeeeeee
Q 004214          201 SNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY-LAVATNIEQVQVYDLSSMSCSYVLA  279 (768)
Q Consensus       201 ~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~~~~i~i~d~~~~~~~~~~~  279 (768)
                                                                   .|+ +++++ ++++..++.|.+||..+++.+..+.
T Consensus       115 ---------------------------------------------~~S-pDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~  148 (432)
T d1qksa2         115 ---------------------------------------------MEG-WEDKYAIAGAYWPPQYVIMDGETLEPKKIQS  148 (432)
T ss_dssp             ---------------------------------------------STT-CTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred             ---------------------------------------------ccC-CCCCEEEEEcCCCCeEEEEeCccccceeeec
Confidence                                                         111 23333 2444455566666666555555443


Q ss_pred             CCc-----------cceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee-cccCcEEEEEEecCCCcEEEEEe
Q 004214          280 GHS-----------EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGS  347 (768)
Q Consensus       280 ~~~-----------~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~  347 (768)
                      .|.           .....+.  +.+++..++++...++.|.+||..+.+...... .+...+..++|+|+|+.+++++.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~v~--~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~  226 (432)
T d1qksa2         149 TRGMTYDEQEYHPEPRVAAIL--ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN  226 (432)
T ss_dssp             CCEECTTTCCEESCCCEEEEE--ECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred             cCCccccceeccCCCceeEEE--ECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEecc
Confidence            322           2233343  667788877888889999999998876554433 34567889999999886666666


Q ss_pred             CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceEEEEeccCCCeE
Q 004214          348 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVVTFRGHKRGIW  426 (768)
Q Consensus       348 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~  426 (768)
                      .++.+.++|.........     ........|........+...+...++.. .++.+.+|+.....    ...|...+.
T Consensus       227 ~~~~v~v~d~~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~----~~~~~~~v~  297 (432)
T d1qksa2         227 ARNKLVVIDTKEGKLVAI-----EDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG----HPDNAWKIL  297 (432)
T ss_dssp             GGTEEEEEETTTTEEEEE-----EECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT----CTTTBTSEE
T ss_pred             ccceEEEeecccceEEEE-----eccCccccccCcccceecCCCCceecccccCCceEEeccccccc----ccccccEEE
Confidence            778899999875321000     00000112334444555555555555543 37789999876543    245677889


Q ss_pred             EEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCC
Q 004214          427 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE  506 (768)
Q Consensus       427 ~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  506 (768)
                      ...++|++..+++++.+.+.++|+......      |......+++ ||++.|++++.|+.+++|++.++..+   ..|.
T Consensus       298 ~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~------~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l---~~~~  367 (432)
T d1qksa2         298 DSFPALGGGSLFIKTHPNSQYLYVDATLNP------EAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI---TEGQ  367 (432)
T ss_dssp             EEEECSCSCCCCEECCTTCSEEEEECTTCS------SHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC---CSSC
T ss_pred             EEEEcCCCCeEEEEecCCccceeecccCCC------CCCeeeEEEE-EechhhcccccCCceEeccccccccc---CCCC
Confidence            999999999999999999999998755432      3333334554 99999999999999999998766433   3577


Q ss_pred             CcEEEEEEcCCCCEEEEEe-----CCCcEEEEEcCCHH
Q 004214          507 DKIWALAVGKKTEMFATGG-----SDALVNLWHDSTAA  539 (768)
Q Consensus       507 ~~v~~l~~s~~~~~l~s~~-----~dg~v~vw~~~~~~  539 (768)
                      ..|.+++|||||++++.+.     .+|.|.|||..|.+
T Consensus       368 ~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k  405 (432)
T d1qksa2         368 PRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE  405 (432)
T ss_dssp             CEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             CcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCce
Confidence            8899999999999886553     47889999998864

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=3.4e-27  Score=243.72  Aligned_cols=327  Identities=11%  Similarity=0.027  Sum_probs=220.8

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEEeCC--CcEEEEECCCCeeEEEecCccceeEE
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD--ATVRVWDLLAKKCVATLDKHFSRVTS   79 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg~~d--g~I~iWd~~~~~~~~~l~~h~~~V~~   79 (768)
                      ++|+++ +|.|.+||+.++..++.  +|.+.|++++|+|||+.  |++++.+  ..|++||+.+++.. .+..|.+.|.+
T Consensus        17 ~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~--l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~   90 (360)
T d1k32a3          17 LIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKV--AFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFA   90 (360)
T ss_dssp             CEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEE--EEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEE
T ss_pred             EEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCE--EEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEe
Confidence            456554 68999999999986653  79999999999999987  6555443  37999999877655 67789999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecce-eEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeC
Q 004214           80 MAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE  158 (768)
Q Consensus        80 l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (768)
                      ++|+|||++|++++.++.+++|++.+++....+..+. .+..++|+|++                               
T Consensus        91 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-------------------------------  139 (360)
T d1k32a3          91 MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNS-------------------------------  139 (360)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTS-------------------------------
T ss_pred             eeecccccccceeccccccccccccccceeeeeecccccccchhhccce-------------------------------
Confidence            9999999999999999999999999887665544322 23334444433                               


Q ss_pred             CcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeeccc
Q 004214          159 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY  238 (768)
Q Consensus       159 ~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~  238 (768)
                                                                  ..++....++.                         
T Consensus       140 --------------------------------------------~~la~~~~~~~-------------------------  150 (360)
T d1k32a3         140 --------------------------------------------RFIAYGFPLKH-------------------------  150 (360)
T ss_dssp             --------------------------------------------CEEEEEEEECS-------------------------
T ss_pred             --------------------------------------------eeeeeeccccc-------------------------
Confidence                                                        33322221110                         


Q ss_pred             CCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce
Q 004214          239 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC  318 (768)
Q Consensus       239 ~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  318 (768)
                                     ..+.+..++.+++|+..+++..... .+...+.++.  +.++++. |++++.++.+.+|+.....
T Consensus       151 ---------------~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~--~spdg~~-l~~~s~~~~~~~~d~~~~~  211 (360)
T d1k32a3         151 ---------------GETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPA--FDADSKN-LYYLSYRSLDPSPDRVVLN  211 (360)
T ss_dssp             ---------------STTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEE--ECTTSCE-EEEEESCCCCCEECSSSSC
T ss_pred             ---------------cceeeccccceeeeccccCceeeec-cccccccccc--ccCCCCE-EEEEeCCCceEcccccccc
Confidence                           0111223356888999887765443 4555666665  7777776 8999999999999976543


Q ss_pred             EE-------EeeecccCcEEEEEEecCCCcEEEEEeCCC---eEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEE
Q 004214          319 CV-------GVGTGHMGAVGAVAFSKKLQNFLVSGSSDH---TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV  388 (768)
Q Consensus       319 ~~-------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  388 (768)
                      ..       .....|...+..+.+++++. .++++..+.   ..++|.+...         .........+...+..+.+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~  281 (360)
T d1k32a3         212 FSFEVVSKPFVIPLIPGSPNPTKLVPRSM-TSEAGEYDLNDMYKRSSPINVD---------PGDYRMIIPLESSILIYSV  281 (360)
T ss_dssp             EECCSCBEEEEEESSTTCCCGGGCCCGGG-SCCCCCCCCTTGGGGCEECSCC---------CBCEEEEEECSSEEEEEEC
T ss_pred             eeeccccceEEEecccCccccceECCCcC-cccccceeecccccceeecccC---------cCceeEeeecCCCceEEEE
Confidence            22       22333444444455555544 233322221   1123332211         1112223344455555555


Q ss_pred             ccC---CCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC
Q 004214          389 APN---DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS  465 (768)
Q Consensus       389 s~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~  465 (768)
                      .+.   +.++++++.++.+++||+.+++..    .|...|.+++|+|||++|++++.||.|++||+.+++...++..+..
T Consensus       282 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~  357 (360)
T d1k32a3         282 PVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKR  357 (360)
T ss_dssp             CCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSS
T ss_pred             EecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEeccc
Confidence            544   346788888999999999887643    3445699999999999999999999999999999999888876665


Q ss_pred             cE
Q 004214          466 SV  467 (768)
Q Consensus       466 ~v  467 (768)
                      ++
T Consensus       358 ~~  359 (360)
T d1k32a3         358 PL  359 (360)
T ss_dssp             CE
T ss_pred             cc
Confidence            54

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=3.7e-22  Score=199.83  Aligned_cols=275  Identities=15%  Similarity=0.126  Sum_probs=209.1

Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeeeeecceeEeeEEec
Q 004214           46 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLI-SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI  124 (768)
Q Consensus        46 ~l~sg~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~-s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~  124 (768)
                      +.++++.|++|.|||+.+++.+.++... ..+..++|+|||++|+ +++.++.|++||+.+++.+.+++....+.     
T Consensus         4 ~yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~-----   77 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-----   77 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-----
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccc-----
Confidence            3467788999999999999999998754 4478999999999885 56678999999999988776655433333     


Q ss_pred             CCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCc
Q 004214          125 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQG  204 (768)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (768)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (301)
T d1l0qa2          78 --------------------------------------------------------------------------------   77 (301)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccc
Q 004214          205 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEI  284 (768)
Q Consensus       205 l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~  284 (768)
                                                             .+.|.+++...++++..++.+.+|+..+++....+..+..+
T Consensus        78 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (301)
T d1l0qa2          78 ---------------------------------------GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSP  118 (301)
T ss_dssp             ---------------------------------------EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             ---------------------------------------ccccccccccccccccccceeeecccccceeeeeccccccc
Confidence                                                   33333333334455556677888888888877777665544


Q ss_pred             eEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC
Q 004214          285 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA  364 (768)
Q Consensus       285 v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  364 (768)
                       .++.  +.+++..+++++..++.+.+|+..+......+..+ ..+..++++|++..++++...++.+.+|+....    
T Consensus       119 -~~~~--~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  190 (301)
T d1l0qa2         119 -LGLA--LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN----  190 (301)
T ss_dssp             -EEEE--ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----
T ss_pred             -eEEE--eecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccce----
Confidence             4444  77888887788888999999999999988877655 457889999998755555556677778876532    


Q ss_pred             ccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEE-EEe
Q 004214          365 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ---DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV-ITA  440 (768)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~t~  440 (768)
                             ...........+..+++++++..+++++.   ++.|.+||+.+++.+..+.. ...+.+++|+|||++| +++
T Consensus       191 -------~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~va~spdg~~l~va~  262 (301)
T d1l0qa2         191 -------SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVAL  262 (301)
T ss_dssp             -------EEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEE
T ss_pred             -------eeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC-CCCEEEEEEeCCCCEEEEEE
Confidence                   22222334456788999999998877654   36799999999999888774 4567999999999976 577


Q ss_pred             eCCCcEEEEeCCCCceeEEee
Q 004214          441 SGDKTIKIWSISDGSCLKTFE  461 (768)
Q Consensus       441 ~~d~~i~iwd~~~~~~~~~~~  461 (768)
                      +.|++|++||+.+++++.++.
T Consensus       263 ~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         263 SFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEE
T ss_pred             CCCCeEEEEECCCCeEEEEEe
Confidence            789999999999999998886

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=1e-21  Score=196.47  Aligned_cols=267  Identities=15%  Similarity=0.125  Sum_probs=215.1

Q ss_pred             EEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEE
Q 004214          255 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA  334 (768)
Q Consensus       255 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  334 (768)
                      +++++.++.|.+||+.+++.+..+..... +..++  ++++++.++++++.++.|++||+.+++.+..+..+.. +..++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~-p~~va--~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~   80 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGSN-PMGAV--ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVA   80 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEE--ECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCCC-ceEEE--EeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccc
Confidence            34566789999999999999988876543 56666  8888888677888999999999999999998887754 58899


Q ss_pred             EecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEE-EeCCCcEEEEeCCCCc
Q 004214          335 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT-GSQDRTACVWRLPDLV  413 (768)
Q Consensus       335 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~  413 (768)
                      +++++..+++++..++.+.+|+....          ..... ..+...+.+++++|++..++. +..++.+.+|+..+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~  149 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSN----------TVAGT-VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA  149 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTT----------EEEEE-EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             cccccccccccccccceeeecccccc----------eeeee-ccccccceEEEeecCCCeeeeeeccccceeeeeccccc
Confidence            99998877888888999999998743          12222 334566789999999988765 4567889999999999


Q ss_pred             eEEEEeccCCCeEEEEEccCCCEEEEeeCC-CcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeC---CCcEE
Q 004214          414 SVVTFRGHKRGIWSVEFSPVDQVVITASGD-KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA---DGLVK  489 (768)
Q Consensus       414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d-~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---dg~i~  489 (768)
                      ....+..+ ..+..++++|++..+++++.+ +.+.+|+.........+. +...+..++|+++++.++.++.   ++.|+
T Consensus       150 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~  227 (301)
T d1l0qa2         150 VINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVS  227 (301)
T ss_dssp             EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred             eeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeeccc-ccCCcceeeccccccccccccccceeeeee
Confidence            88887744 567899999999988877765 667788887777777766 4456778999999998876644   46899


Q ss_pred             EEECCCCeEEEEeccCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEEcCCHH
Q 004214          490 LWTVRTGECIATYDKHEDKIWALAVGKKTEMF-ATGGSDALVNLWHDSTAA  539 (768)
Q Consensus       490 iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~s~~~dg~v~vw~~~~~~  539 (768)
                      +||+.+++.+..+.. ...+.+++|+|||++| ++++.|+.|.+||..+++
T Consensus       228 v~D~~t~~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         228 MIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             EEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             eeecCCCeEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence            999999999998874 4568999999999987 577789999999998764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=5.4e-24  Score=217.11  Aligned_cols=310  Identities=13%  Similarity=0.070  Sum_probs=214.2

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEEcC--CCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCcc-----
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFKGH--KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-----   74 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~gh--~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h~-----   74 (768)
                      |+++++.|++|.|||+.++++++.+..+  ...+.+++|+|||++ ++++++.++.|.+||+.+++.+..+..+.     
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~-l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            7999999999999999999999998753  456889999999986 33577889999999999999998887653     


Q ss_pred             ceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEE
Q 004214           75 SRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI  154 (768)
Q Consensus        75 ~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (768)
                      ..+..++|+|+++++++++.+.....|...                                                  
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~--------------------------------------------------  111 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFE--------------------------------------------------  111 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEE--------------------------------------------------
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeecc--------------------------------------------------
Confidence            345689999999999988765433322110                                                  


Q ss_pred             EeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEee
Q 004214          155 TVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKR  234 (768)
Q Consensus       155 ~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~  234 (768)
                                                                                                      
T Consensus       112 --------------------------------------------------------------------------------  111 (337)
T d1pbyb_         112 --------------------------------------------------------------------------------  111 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC
Q 004214          235 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS  314 (768)
Q Consensus       235 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~  314 (768)
                                              ..++.+.+||..++.....+..+. .+.++.  +.+++.. +++++  +.+.+||.
T Consensus       112 ------------------------~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~--~s~dg~~-l~~~~--~~~~~~d~  161 (337)
T d1pbyb_         112 ------------------------VQPTRVALYDAETLSRRKAFEAPR-QITMLA--WARDGSK-LYGLG--RDLHVMDP  161 (337)
T ss_dssp             ------------------------ECCCEEEEEETTTTEEEEEEECCS-SCCCEE--ECTTSSC-EEEES--SSEEEEET
T ss_pred             ------------------------ccccceeeccccCCeEEEeccccC-CceEEE--EcCCCCE-EEEEc--CCcceeee
Confidence                                    011344445555555444444322 233443  5566665 55554  34677888


Q ss_pred             CCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE
Q 004214          315 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL  394 (768)
Q Consensus       315 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  394 (768)
                      .+++....+..+... ....+.|++..+...+...+....+.                             .....+...
T Consensus       162 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~  211 (337)
T d1pbyb_         162 EAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPF-----------------------------YTARKDIDP  211 (337)
T ss_dssp             TTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEE-----------------------------EEEBTTSCT
T ss_pred             ecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeee-----------------------------eeeeeccce
Confidence            888777665543321 12223333332222222222222211                             111222222


Q ss_pred             EEEEeCCCcEEEEeCCCCceEE-EEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEE
Q 004214          395 VCTGSQDRTACVWRLPDLVSVV-TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL  473 (768)
Q Consensus       395 l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  473 (768)
                      ...+..++.+.+|+..++.... .+..+...+..+.++|++.+++++  ++.|++||+.+++.+..+. +...+.+++|+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s  288 (337)
T d1pbyb_         212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVS  288 (337)
T ss_dssp             TSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEEC
T ss_pred             eeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEEC
Confidence            3333445678899998887554 355677888999999999998876  4889999999999999887 66778999999


Q ss_pred             eCCCEEEEEeCCCcEEEEECCCCeEEEEeccC
Q 004214          474 TRGAQIVSCGADGLVKLWTVRTGECIATYDKH  505 (768)
Q Consensus       474 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  505 (768)
                      |||++|++++.||.|++||..+++.+.++..+
T Consensus       289 ~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         289 TDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             TTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence            99999999999999999999999999988643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=1.4e-23  Score=214.90  Aligned_cols=329  Identities=10%  Similarity=-0.000  Sum_probs=227.1

Q ss_pred             EEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEec-CccceeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeeeee
Q 004214           36 ILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD-KHFSRVTSMAITSDGSTLI-SAGRDKVVNLWDLRDYSCKLTVP  113 (768)
Q Consensus        36 l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~-~h~~~V~~l~fs~d~~~L~-s~~~dg~i~vWd~~~~~~~~~~~  113 (768)
                      ++|++++++  +++++.|++|.|||+.+++.+.++. .|...+.+++|+|||++++ +++.++.|.+||+.+++.+..+.
T Consensus         2 ~a~~~~~~~--l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           2 PALKAGHEY--MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCTTCEE--EEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCCcE--EEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            478898887  9999999999999999999999887 4566789999999999875 45578999999999998877665


Q ss_pred             cceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccce
Q 004214          114 TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGF  193 (768)
Q Consensus       114 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (768)
                      .........                                                                    ...
T Consensus        80 ~~~~~~~~~--------------------------------------------------------------------~~~   91 (346)
T d1jmxb_          80 LSSVPGEVG--------------------------------------------------------------------RSM   91 (346)
T ss_dssp             SCCSTTEEE--------------------------------------------------------------------ECS
T ss_pred             ccccccccC--------------------------------------------------------------------Cce
Confidence            322110000                                                                    111


Q ss_pred             eEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce
Q 004214          194 TAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS  273 (768)
Q Consensus       194 ~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~  273 (768)
                      ..+.++|++..+++...+.....+                                      .....++.+.+|+..++.
T Consensus        92 ~~v~~s~DG~~l~v~~~~~~~~~~--------------------------------------~~~~~~~~i~~~~~~~~~  133 (346)
T d1jmxb_          92 YSFAISPDGKEVYATVNPTQRLND--------------------------------------HYVVKPPRLEVFSTADGL  133 (346)
T ss_dssp             SCEEECTTSSEEEEEEEEEEECSS--------------------------------------CEEECCCEEEEEEGGGGG
T ss_pred             EEEEEecCCCEEEEEecCCcceee--------------------------------------eeccCcceEEEEecccce
Confidence            233445555555444333211111                                      112234677778877766


Q ss_pred             eeeeeeCCc--cceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCe
Q 004214          274 CSYVLAGHS--EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT  351 (768)
Q Consensus       274 ~~~~~~~~~--~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~  351 (768)
                      ....+..+.  ..+..+   ..+++..+++ .  ++.+.+|+..+++.+..+..+. ....+.++|++..+++.+..++.
T Consensus       134 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  206 (346)
T d1jmxb_         134 EAKPVRTFPMPRQVYLM---RAADDGSLYV-A--GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHE  206 (346)
T ss_dssp             GBCCSEEEECCSSCCCE---EECTTSCEEE-E--SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCE
T ss_pred             eeeEEEeeeccCceEEE---EecCCCEEEE-e--CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCc
Confidence            554443222  122222   3345555343 3  3568999999998888776553 34556677877655555666666


Q ss_pred             EEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEE-EEeccCCCeEEEEE
Q 004214          352 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV-TFRGHKRGIWSVEF  430 (768)
Q Consensus       352 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~v~~  430 (768)
                      +.+++..                           ..+.+....++++..++.+.+|++.++.... .+..|...+.++.+
T Consensus       207 ~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (346)
T d1jmxb_         207 FSMLYTI---------------------------ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLR  259 (346)
T ss_dssp             EEEEEEE---------------------------EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE
T ss_pred             eEeeeee---------------------------eeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEE
Confidence            6665432                           1222344455566667789999999887554 45568888999999


Q ss_pred             ccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCc
Q 004214          431 SPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK  508 (768)
Q Consensus       431 s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  508 (768)
                      ++++..++.+.. +.|.+||+.+++.+..+. +...+.+++|+|||++|++++.||.|++||+.+++.+.++..+.++
T Consensus       260 ~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~  335 (346)
T d1jmxb_         260 SPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGD  335 (346)
T ss_dssp             CSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred             eCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCCC
Confidence            999888877765 679999999999998887 5567899999999999999999999999999999999999865544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=4.4e-22  Score=203.61  Aligned_cols=318  Identities=9%  Similarity=-0.021  Sum_probs=213.5

Q ss_pred             EEEeecCCCcEEEEECCCCEEEEEEE-cCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEecCc------c
Q 004214            2 FALLEGADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH------F   74 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~~~l~-gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~~h------~   74 (768)
                      |+|+++.+++|.|||+.+++.++++. +|...+.+++|+|||++ ++++++.++.|.+||+.+++.+..+...      .
T Consensus        10 ~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~   88 (346)
T d1jmxb_          10 YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG   88 (346)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEE
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCE-EEEEECCCCcEEEEeCccCeeeeeecccccccccC
Confidence            79999999999999999999999987 56778899999999986 3467778999999999999998877532      2


Q ss_pred             ceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEE
Q 004214           75 SRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI  154 (768)
Q Consensus        75 ~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (768)
                      ..+..++|+|||+++++++.+.....|.                                                    
T Consensus        89 ~~~~~v~~s~DG~~l~v~~~~~~~~~~~----------------------------------------------------  116 (346)
T d1jmxb_          89 RSMYSFAISPDGKEVYATVNPTQRLNDH----------------------------------------------------  116 (346)
T ss_dssp             ECSSCEEECTTSSEEEEEEEEEEECSSC----------------------------------------------------
T ss_pred             CceEEEEEecCCCEEEEEecCCcceeee----------------------------------------------------
Confidence            3467899999999998876543222111                                                    


Q ss_pred             EeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEee
Q 004214          155 TVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKR  234 (768)
Q Consensus       155 ~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~  234 (768)
                      ....++.+.+|+..++.....                  ......|...                               
T Consensus       117 ~~~~~~~i~~~~~~~~~~~~~------------------~~~~~~~~~~-------------------------------  147 (346)
T d1jmxb_         117 YVVKPPRLEVFSTADGLEAKP------------------VRTFPMPRQV-------------------------------  147 (346)
T ss_dssp             EEECCCEEEEEEGGGGGGBCC------------------SEEEECCSSC-------------------------------
T ss_pred             eccCcceEEEEecccceeeeE------------------EEeeeccCce-------------------------------
Confidence            112233455555544411100                  0000001111                               


Q ss_pred             ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeC
Q 004214          235 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS  314 (768)
Q Consensus       235 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~  314 (768)
                              ..+. .++++..++ .  ++.+.+|+..+++....+..+.... .+.  +.+++..+.+.+..++.+.+++.
T Consensus       148 --------~~~~-~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~  212 (346)
T d1jmxb_         148 --------YLMR-AADDGSLYV-A--GPDIYKMDVKTGKYTVALPLRNWNR-KGY--SAPDVLYFWPHQSPRHEFSMLYT  212 (346)
T ss_dssp             --------CCEE-ECTTSCEEE-E--SSSEEEECTTTCCEEEEECSTTCCC-TTB--CCCBCCCCCCCCCTTCEEEEEEE
T ss_pred             --------EEEE-ecCCCEEEE-e--CCcceEEEccCCCEEEEEecCCCcc-ceE--EeccccEEEEEecCCCceEeeee
Confidence                    1111 122333332 2  2568888988888877776554332 222  44555554455555555555532


Q ss_pred             CCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCE
Q 004214          315 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL  394 (768)
Q Consensus       315 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  394 (768)
                      .                  ...+.....+.++..++.+.+|++....         ........+...+.++.+++++..
T Consensus       213 ~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  265 (346)
T d1jmxb_         213 I------------------ARFKDDKQDPATADLLYGYLSVDLKTGK---------THTQEFADLTELYFTGLRSPKDPN  265 (346)
T ss_dssp             E------------------EEC-------CCCEEEEEEEEEETTTCC---------EEEEEEEECSSCEEEEEECSSCTT
T ss_pred             e------------------eeeccCceeEeeccCCceEEEEECCCCc---------eEEEEeecccceeEEEEEeCCCCE
Confidence            1                  1111222345666677789999987532         233445567788999999999888


Q ss_pred             EEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC
Q 004214          395 VCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS  465 (768)
Q Consensus       395 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~  465 (768)
                      ++.+.. +.|.+||..+++.+..+. +...+.+++|+|||++|++++.|+.|++||+.+++.+.++..+.+
T Consensus       266 ~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         266 QIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             EEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred             EEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence            887664 579999999999888776 556799999999999999999999999999999999999885443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.89  E-value=1.1e-19  Score=187.91  Aligned_cols=335  Identities=10%  Similarity=-0.028  Sum_probs=221.3

Q ss_pred             EEcCCCcEEEEEEeeCCCccEEEE---EeCCCcEEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEeC--------
Q 004214           26 FKGHKGVVSSILFHPDTDKSLLFS---GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR--------   94 (768)
Q Consensus        26 l~gh~~~V~~l~~spd~~~~~l~s---g~~dg~I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~~--------   94 (768)
                      ..+|.+++.+++++|||++.++..   .+..+.|.+||..+++.+.++..+..+  .++|+|||++|++++.        
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccc
Confidence            346889999999999999833322   133467999999999999998876654  7999999999998753        


Q ss_pred             --CCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCcee
Q 004214           95 --DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL  172 (768)
Q Consensus        95 --dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~  172 (768)
                        ++.|.+||+.+++.+..+..+..........                                               
T Consensus        94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~-----------------------------------------------  126 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY-----------------------------------------------  126 (373)
T ss_pred             ccceEEEEEECCCCcEEEEEecCCcceeEeccC-----------------------------------------------
Confidence              4678888888877665554322111000000                                               


Q ss_pred             eeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCC
Q 004214          173 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE  252 (768)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  252 (768)
                                                                                           ...+.|++.+.
T Consensus       127 ---------------------------------------------------------------------~~~~~~s~dg~  137 (373)
T d2madh_         127 ---------------------------------------------------------------------SWMNANTPNNA  137 (373)
T ss_pred             ---------------------------------------------------------------------CCcEEEEeCCC
Confidence                                                                                 01122222111


Q ss_pred             CEE-EEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeeccc----
Q 004214          253 QYL-AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM----  327 (768)
Q Consensus       253 ~~l-~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----  327 (768)
                      ..+ .....++.+.+|+..+.+......    ...++.  +.+++...+++.+.||.+.+|+...+........+.    
T Consensus       138 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~  211 (373)
T d2madh_         138 DLLFFQFAAGPAVGLVVQGGSSDDQLLS----SPTCYH--IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAA  211 (373)
T ss_pred             cEEEEEEcCCCceEEeeccCCeEEEEec----cceeEE--EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccC
Confidence            111 112234566777776665443332    233444  667777778889999999999998887766544322    


Q ss_pred             --CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEE
Q 004214          328 --GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC  405 (768)
Q Consensus       328 --~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  405 (768)
                        .....+.+.+++  .++..+.++.+.+|+.....        .........+........+.|.+...+..+.|+...
T Consensus       212 ~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  281 (373)
T d2madh_         212 QNLLTQPAQANKSG--RIVWPVYSGKILQADISAAG--------ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI  281 (373)
T ss_pred             ccceeeeEEECCCc--eEEEecCCceEEEEEcCCCe--------EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeE
Confidence              122334444443  46777889999999987532        111222223334444555555555555555444322


Q ss_pred             EEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCE--EEEEe
Q 004214          406 VWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ--IVSCG  483 (768)
Q Consensus       406 i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~s~~  483 (768)
                      .                      .+.+.+..+++...++.+.+||..+++.+..+. +...+..++|+|||+.  +++++
T Consensus       282 ~----------------------~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~  338 (373)
T d2madh_         282 Y----------------------LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSA  338 (373)
T ss_pred             E----------------------EecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeC
Confidence            1                      233456667778888999999999999999887 6678899999999984  46788


Q ss_pred             CCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCC
Q 004214          484 ADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK  517 (768)
Q Consensus       484 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~  517 (768)
                      .|+.|++||+.+++.+.++..+......|++.++
T Consensus       339 ~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         339 GTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            8999999999999999999988888888877654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=2e-20  Score=190.30  Aligned_cols=267  Identities=11%  Similarity=0.047  Sum_probs=203.5

Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeeCC--ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccC--
Q 004214          253 QYLAVATNIEQVQVYDLSSMSCSYVLAGH--SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMG--  328 (768)
Q Consensus       253 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--  328 (768)
                      .++++++.++.|.+||+.+++.+..+..+  ...+.+++  +.++++.++++++.++.|.+||+.+++.+.....+..  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~--~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPM--VAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEE--ECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEE--ECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            47899999999999999999999888654  34456666  7788888667888899999999999999888776543  


Q ss_pred             ---cEEEEEEecCCCcEEEEEe------------CCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCC
Q 004214          329 ---AVGAVAFSKKLQNFLVSGS------------SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS  393 (768)
Q Consensus       329 ---~v~~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  393 (768)
                         .+..++|+|+++. ++++.            .++.+.+||....          ..... ..+...+.+++|+|+|+
T Consensus        80 ~~~~~~~v~~s~dg~~-l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----------~~~~~-~~~~~~~~~~~~s~dg~  147 (337)
T d1pbyb_          80 RVKSLFGAALSPDGKT-LAIYESPVRLELTHFEVQPTRVALYDAETL----------SRRKA-FEAPRQITMLAWARDGS  147 (337)
T ss_dssp             EEECTTCEEECTTSSE-EEEEEEEEEECSSCEEECCCEEEEEETTTT----------EEEEE-EECCSSCCCEEECTTSS
T ss_pred             cccceeeEEEcCCCcE-EEEeecCCcceeeeccccccceeeccccCC----------eEEEe-ccccCCceEEEEcCCCC
Confidence               3457899999874 55444            4577888887743          22222 23456688999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCC------------------------CEEEEeeCCCcEEEE
Q 004214          394 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD------------------------QVVITASGDKTIKIW  449 (768)
Q Consensus       394 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~------------------------~~l~t~~~d~~i~iw  449 (768)
                      ++++++.  .+.+||..+++....+..+... ....++|++                        .....+..++.+.+|
T Consensus       148 ~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (337)
T d1pbyb_         148 KLYGLGR--DLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM  224 (337)
T ss_dssp             CEEEESS--SEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred             EEEEEcC--CcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEE
Confidence            9999864  5788999999888777643221 111122221                        112223345669999


Q ss_pred             eCCCCceeE-EeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 004214          450 SISDGSCLK-TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA  528 (768)
Q Consensus       450 d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg  528 (768)
                      +..++.... .+..+...+..+.+++++.+++.+  ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.||
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~  301 (337)
T d1pbyb_         225 DLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALG  301 (337)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSS
T ss_pred             EcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCC
Confidence            999887654 455677888889999999998776  4889999999999999986 677889999999999999999999


Q ss_pred             cEEEEEcCCHH
Q 004214          529 LVNLWHDSTAA  539 (768)
Q Consensus       529 ~v~vw~~~~~~  539 (768)
                      .|++||..+.+
T Consensus       302 ~i~v~D~~t~~  312 (337)
T d1pbyb_         302 DLAAYDAETLE  312 (337)
T ss_dssp             EEEEEETTTCC
T ss_pred             cEEEEECCCCc
Confidence            99999998754

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.83  E-value=3.2e-17  Score=169.02  Aligned_cols=301  Identities=10%  Similarity=-0.056  Sum_probs=200.9

Q ss_pred             CCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEEE----------eCCCcEEEEECCCCeeEEEecCcccee
Q 004214            8 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG----------SDDATVRVWDLLAKKCVATLDKHFSRV   77 (768)
Q Consensus         8 ~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~sg----------~~dg~I~iWd~~~~~~~~~l~~h~~~V   77 (768)
                      ..+.|.+||..+++.+..+.++...  .++|+|||++  ++++          ..++.|.+||..+++.+..+..+....
T Consensus        45 ~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~--l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~  120 (373)
T d2madh_          45 AIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSE--FALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR  120 (373)
T ss_pred             CCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCE--EEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcce
Confidence            4567999999999999999877655  7999999998  5444          346889999999999998887766544


Q ss_pred             -------EEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCC
Q 004214           78 -------TSMAITSDGSTLISAG--RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRS  148 (768)
Q Consensus        78 -------~~l~fs~d~~~L~s~~--~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (768)
                             ..+.|+++++.++...  .++.+.+|+..+.+......                                   
T Consensus       121 ~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------  165 (373)
T d2madh_         121 FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS-----------------------------------  165 (373)
T ss_pred             eEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec-----------------------------------
Confidence                   3466777777655443  34456666655443221111                                   


Q ss_pred             cceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCccccee
Q 004214          149 LEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKME  228 (768)
Q Consensus       149 ~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~  228 (768)
                                                                                                      
T Consensus       166 --------------------------------------------------------------------------------  165 (373)
T d2madh_         166 --------------------------------------------------------------------------------  165 (373)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCcc----ceEEEeeeeecCCCEEEEEEe
Q 004214          229 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE----IVLCLDTCALSSGKILIVTGS  304 (768)
Q Consensus       229 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~v~~l~~~~~~~~~~~l~~~~  304 (768)
                                  ...++.+++.....+++.+.++.+.+|+...+........+..    ....... ....+.. ++..+
T Consensus       166 ------------~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~  231 (373)
T d2madh_         166 ------------SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPA-QANKSGR-IVWPV  231 (373)
T ss_pred             ------------cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeE-EECCCce-EEEec
Confidence                        1123334444444555666667777777766665544332211    1111110 2233333 66677


Q ss_pred             CCCeEEEEeCCCceEEE--eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCC
Q 004214          305 KDNSVRLWDSESRCCVG--VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD  382 (768)
Q Consensus       305 ~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (768)
                      .++.+.+|+..++....  ....+........+.|... ..++.+.|+....                            
T Consensus       232 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~----------------------------  282 (373)
T d2madh_         232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGW-QQVAYLKSSDGIY----------------------------  282 (373)
T ss_pred             CCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcc-eeeEEecCCCeEE----------------------------
Confidence            88999999988765433  2334444455555555433 3344444443222                            


Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCC--EEEEeeCCCcEEEEeCCCCceeEEe
Q 004214          383 INSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTF  460 (768)
Q Consensus       383 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~t~~~d~~i~iwd~~~~~~~~~~  460 (768)
                          .+.+++..+++...++.+.+||..+++.+..+. +...+.+++|+|||+  ++++++.|++|++||+.+++.++++
T Consensus       283 ----~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~  357 (373)
T d2madh_         283 ----LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             ----EecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence                233455667788888999999999999988776 667889999999998  4568899999999999999999999


Q ss_pred             ecCCCcEEEEEEEeC
Q 004214          461 EGHTSSVLRASFLTR  475 (768)
Q Consensus       461 ~~~~~~v~~~~~s~~  475 (768)
                      .++....+.+++.++
T Consensus       358 ~~~g~~P~~l~~~~~  372 (373)
T d2madh_         358 VELGSGPQVLSVMNE  372 (373)
T ss_pred             CCCCCCCcEEEEecC
Confidence            988888887877654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=1.5e-18  Score=177.80  Aligned_cols=210  Identities=10%  Similarity=0.007  Sum_probs=136.6

Q ss_pred             eecCCCEEEEE-EeCCCeEEEEeCCCceEEEeeecccCc-------EEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCC
Q 004214          292 ALSSGKILIVT-GSKDNSVRLWDSESRCCVGVGTGHMGA-------VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD  363 (768)
Q Consensus       292 ~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  363 (768)
                      +.++++.+++. .+.+..+.+|+..+++.+..+..+...       ...+.+++++..+++....++.+.+++.....  
T Consensus       113 ~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~--  190 (355)
T d2bbkh_         113 LTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH--  190 (355)
T ss_dssp             ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS--
T ss_pred             EecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc--
Confidence            34455542222 234567778888877777665543321       22344455544333333344444444433211  


Q ss_pred             CccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEE--EEecc----------CCCeEEEEEc
Q 004214          364 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV--TFRGH----------KRGIWSVEFS  431 (768)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~----------~~~v~~v~~s  431 (768)
                                   ..+...+....+.+++..++.++.++.+++|++..+....  ....+          ......++++
T Consensus       191 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  257 (355)
T d2bbkh_         191 -------------PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH  257 (355)
T ss_dssp             -------------CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE
T ss_pred             -------------ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEe
Confidence                         1233345566788888899999999999999998775432  12211          1234568899


Q ss_pred             cCCCEEEEeeCC----------CcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCC--EEEEEeCCCcEEEEECCCCeEE
Q 004214          432 PVDQVVITASGD----------KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA--QIVSCGADGLVKLWTVRTGECI  499 (768)
Q Consensus       432 ~~~~~l~t~~~d----------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iwd~~~~~~~  499 (768)
                      |++..++....+          ..|.+||..+++.+.++. +...+.+++|+|||+  ++++++.|+.|++||+.+++.+
T Consensus       258 ~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~  336 (355)
T d2bbkh_         258 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  336 (355)
T ss_dssp             TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEE
Confidence            999888776543          469999999999998887 445688999999998  3466777999999999999999


Q ss_pred             EEeccCCCcEEEEEEcCC
Q 004214          500 ATYDKHEDKIWALAVGKK  517 (768)
Q Consensus       500 ~~~~~~~~~v~~l~~s~~  517 (768)
                      .++..+......+.+.++
T Consensus       337 ~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         337 RSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             EEECCCCSSCCEEECCCC
T ss_pred             EEEeCcCCCccEEEeCCC
Confidence            999876555555555443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=5.7e-18  Score=171.62  Aligned_cols=288  Identities=13%  Similarity=0.131  Sum_probs=174.1

Q ss_pred             EEEeecCCCcEEEEECCCCEEE--EEEEcCCCcEEEEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEec---Cccce
Q 004214            2 FALLEGADRKVLVWDVDGGFCT--HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD---KHFSR   76 (768)
Q Consensus         2 ~latg~~dg~i~vwd~~~~~~~--~~l~gh~~~V~~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~---~h~~~   76 (768)
                      .+|+++.|++|+||++.+...+  .....|.+.|..|+|||||++ +++++..|+.|++|++........+.   .+...
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~-L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRY-LYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSE-EEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCE-EEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            3577889999999998654322  333468999999999999987 23556668999999997664433332   24456


Q ss_pred             eEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEE
Q 004214           77 VTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT  155 (768)
Q Consensus        77 V~~l~fs~d~~~L~s~~~-dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (768)
                      +..++|+|||++|++++. ++.|.+|+...........                                          
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~------------------------------------------  122 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD------------------------------------------  122 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEE------------------------------------------
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccccceeccc------------------------------------------
Confidence            788999999999999885 5678888765432211100                                          


Q ss_pred             eeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeee
Q 004214          156 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL  235 (768)
Q Consensus       156 ~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~  235 (768)
                                                                                                     .
T Consensus       123 -------------------------------------------------------------------------------~  123 (333)
T d1ri6a_         123 -------------------------------------------------------------------------------V  123 (333)
T ss_dssp             -------------------------------------------------------------------------------E
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           0


Q ss_pred             cccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCC
Q 004214          236 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE  315 (768)
Q Consensus       236 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~  315 (768)
                      ..+...+.++.                                             +.+++..++.....+..|.+|+..
T Consensus       124 ~~~~~~~~~v~---------------------------------------------~s~d~~~~~~~~~~~~~i~~~~~~  158 (333)
T d1ri6a_         124 VEGLDGCHSAN---------------------------------------------ISPDNRTLWVPALKQDRICLFTVS  158 (333)
T ss_dssp             ECCCTTBCCCE---------------------------------------------ECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             cCCCccceEEE---------------------------------------------eeecceeeeccccccceeeEEEec
Confidence            00011112222                                             233333323333333445555443


Q ss_pred             CceEEE------eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214          316 SRCCVG------VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA  389 (768)
Q Consensus       316 ~~~~~~------~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  389 (768)
                      ......      ...........++|++++...+.+....+...+|++............................++++
T Consensus       159 ~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  238 (333)
T d1ri6a_         159 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT  238 (333)
T ss_dssp             TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred             cCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEe
Confidence            321111      11123445678999999876566666778888888764322111000000000011233456778999


Q ss_pred             cCCCEEEEE-eCCCcEEEEeCCCCceEEEE---eccCCCeEEEEEccCCCEEEEee-CCCcEEEEe--CCCCce
Q 004214          390 PNDSLVCTG-SQDRTACVWRLPDLVSVVTF---RGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWS--ISDGSC  456 (768)
Q Consensus       390 ~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd--~~~~~~  456 (768)
                      +++++++.. ..++.+.+|++.........   ......+.+++|+|||++|++++ .+++|++|+  ..+|++
T Consensus       239 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         239 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             cccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            999876665 45678999988765433332   23445678999999999887765 468899995  456654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=5.1e-18  Score=173.78  Aligned_cols=299  Identities=14%  Similarity=0.034  Sum_probs=184.8

Q ss_pred             cCCCcEEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEE--------EeCCCcEEEEECCCCeeEEEecCccc---
Q 004214            7 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS--------GSDDATVRVWDLLAKKCVATLDKHFS---   75 (768)
Q Consensus         7 ~~dg~i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~s--------g~~dg~I~iWd~~~~~~~~~l~~h~~---   75 (768)
                      ..++.|.|||..+++.+.++..+...  .++|||||++.++++        ++.|+.|++||+.+++.+..+..+..   
T Consensus        25 ~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~  102 (355)
T d2bbkh_          25 AAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF  102 (355)
T ss_dssp             CSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred             CCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCccee
Confidence            35668999999999999999877655  699999999844443        35588999999999999887754322   


Q ss_pred             ----eeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCc
Q 004214           76 ----RVTSMAITSDGSTLISAG--RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL  149 (768)
Q Consensus        76 ----~V~~l~fs~d~~~L~s~~--~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (768)
                          ....++|+|++++++.+.  .+..+.+|+..+++.+..+...........                          
T Consensus       103 ~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------  156 (355)
T d2bbkh_         103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT--------------------------  156 (355)
T ss_dssp             CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEE--------------------------
T ss_pred             ecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeec--------------------------
Confidence                345689999999988765  467899999999887766654322111100                          


Q ss_pred             ceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceee
Q 004214          150 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMEL  229 (768)
Q Consensus       150 ~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~  229 (768)
                                                                         .....+..+.|+....             
T Consensus       157 ---------------------------------------------------~~~~~~~~~~dg~~~~-------------  172 (355)
T d2bbkh_         157 ---------------------------------------------------APDTFFMHCRDGSLAK-------------  172 (355)
T ss_dssp             ---------------------------------------------------ETTEEEEEETTSCEEE-------------
T ss_pred             ---------------------------------------------------CCcceEEEcCCCCEEE-------------
Confidence                                                               0000111111111111             


Q ss_pred             EEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeE
Q 004214          230 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV  309 (768)
Q Consensus       230 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i  309 (768)
                                                +....++.+.+++.......     +...+....  +..++.. ++.++.++.+
T Consensus       173 --------------------------v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~-~~~~~~~~~~  218 (355)
T d2bbkh_         173 --------------------------VAFGTEGTPEITHTEVFHPE-----DEFLINHPA--YSQKAGR-LVWPTYTGKI  218 (355)
T ss_dssp             --------------------------EECCSSSCCEEEECCCCSCT-----TSCBCSCCE--EETTTTE-EEEEBTTSEE
T ss_pred             --------------------------EEecCCCeEEEEecccccce-----ecceeeecc--ccCCCCe-EEEecCCCeE
Confidence                                      11112233333333322211     111222222  4455555 7778889999


Q ss_pred             EEEeCCCceEEE--eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEE
Q 004214          310 RLWDSESRCCVG--VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA  387 (768)
Q Consensus       310 ~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  387 (768)
                      ++|++..+....  ....+........+.|.+.                                           ..++
T Consensus       219 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-------------------------------------------~~~~  255 (355)
T d2bbkh_         219 HQIDLSSGDAKFLPAVEALTEAERADGWRPGGW-------------------------------------------QQVA  255 (355)
T ss_dssp             EEEECTTSSCEECCCEESSCHHHHHTTEEECSS-------------------------------------------SCEE
T ss_pred             EEEecCCCcEEEEeccCCcccceEeeeeeccce-------------------------------------------EEEE
Confidence            999987764322  1122222222222233322                                           2233


Q ss_pred             EccCCCEEEEEeC----------CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCC--EEEEeeCCCcEEEEeCCCCc
Q 004214          388 VAPNDSLVCTGSQ----------DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGS  455 (768)
Q Consensus       388 ~s~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~t~~~d~~i~iwd~~~~~  455 (768)
                      ++|++..++....          ...|.+||..+++.+..+. +...+.+++|+|||+  ++++++.|++|++||+.+++
T Consensus       256 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         256 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             EeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence            4444444333322          2368999999999888776 445688999999997  45677789999999999999


Q ss_pred             eeEEeecCCCcEEEEEEEeC
Q 004214          456 CLKTFEGHTSSVLRASFLTR  475 (768)
Q Consensus       456 ~~~~~~~~~~~v~~~~~s~~  475 (768)
                      .++++.++......+.+.++
T Consensus       335 ~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         335 ELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             EEEEECCCCSSCCEEECCCC
T ss_pred             EEEEEeCcCCCccEEEeCCC
Confidence            99999877665555555443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=2e-16  Score=160.05  Aligned_cols=273  Identities=12%  Similarity=0.184  Sum_probs=186.6

Q ss_pred             EEEEEeCCCcEEEEECCCceeeeee--eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEE---eeecccC
Q 004214          254 YLAVATNIEQVQVYDLSSMSCSYVL--AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG---VGTGHMG  328 (768)
Q Consensus       254 ~l~~~~~~~~i~i~d~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~  328 (768)
                      .++++..++.|++|++.+......+  ..|...+.+++  ++|+++.+++++..|+.|++|++.......   ....+..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la--~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~   83 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMV--VSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   83 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEE--ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEE--EeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence            4466678899999998765443333  35778888887  888888866777779999999987543221   1223445


Q ss_pred             cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC-CCcEEEE
Q 004214          329 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRTACVW  407 (768)
Q Consensus       329 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~  407 (768)
                      .+..++|+|+|+.+++++..++.|.+|+....        ..........+...+.++.++|+++++++++. +..+.+|
T Consensus        84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~  155 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG--------LPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLF  155 (333)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETT--------EEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred             CceEEEEcCCCCEEeecccCCCceeeeccccc--------cceecccccCCCccceEEEeeecceeeeccccccceeeEE
Confidence            56789999998854444446789999987643        22233334556677889999999998888775 4569999


Q ss_pred             eCCCCceEEEE------eccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCce----eEEee------cCCCcEEEE
Q 004214          408 RLPDLVSVVTF------RGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSC----LKTFE------GHTSSVLRA  470 (768)
Q Consensus       408 d~~~~~~~~~~------~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~~----~~~~~------~~~~~v~~~  470 (768)
                      +..........      .........++|++++..++... ..+...+|+......    .....      ........+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (333)
T d1ri6a_         156 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI  235 (333)
T ss_dssp             EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred             EeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeE
Confidence            98765433221      12345668899999998877654 456778887654321    11221      233456778


Q ss_pred             EEEeCCCEEEEEe-CCCcEEEEECCCCeEEEE---eccCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEEcC
Q 004214          471 SFLTRGAQIVSCG-ADGLVKLWTVRTGECIAT---YDKHEDKIWALAVGKKTEMFATGG-SDALVNLWHDS  536 (768)
Q Consensus       471 ~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~---~~~~~~~v~~l~~s~~~~~l~s~~-~dg~v~vw~~~  536 (768)
                      ++++++++++.+. .++.+.+|++........   .......+.+++|+|||++|++++ .++.|.+|+++
T Consensus       236 ~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         236 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             EEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            9999999776654 467899998876533222   223445677899999999987765 46889999664

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.62  E-value=5e-14  Score=149.56  Aligned_cols=100  Identities=11%  Similarity=0.145  Sum_probs=82.5

Q ss_pred             CCCcEEEEECCCCEEEEEEEc-----CCCcEEEEEEeeCCCccEEEEEe---------CCCcEEEEECCCCeeEEEecCc
Q 004214            8 ADRKVLVWDVDGGFCTHYFKG-----HKGVVSSILFHPDTDKSLLFSGS---------DDATVRVWDLLAKKCVATLDKH   73 (768)
Q Consensus         8 ~dg~i~vwd~~~~~~~~~l~g-----h~~~V~~l~~spd~~~~~l~sg~---------~dg~I~iWd~~~~~~~~~l~~h   73 (768)
                      .|+.|.+||+.+++....+.+     |...|.++.|||||++  |+.++         .++.+.|||+.+++. ..+..|
T Consensus        34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~--i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~  110 (470)
T d2bgra1          34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQF--ILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERI  110 (470)
T ss_dssp             SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSE--EEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCC
T ss_pred             cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCE--EEEEECCcceeeeccCceEEEEECCCCcc-cccccC
Confidence            578999999999997766654     4578999999999998  55543         357899999998875 458889


Q ss_pred             cceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeee
Q 004214           74 FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT  111 (768)
Q Consensus        74 ~~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~  111 (768)
                      ...+..+.|||||+++|... ++.+.+|+..+++....
T Consensus       111 ~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~  147 (470)
T d2bgra1         111 PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRI  147 (470)
T ss_dssp             CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred             CccccccccccCcceeeEee-cccceEEECCCCceeee
Confidence            99999999999999999865 67899999988875543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=3.4e-15  Score=153.14  Aligned_cols=306  Identities=8%  Similarity=-0.049  Sum_probs=187.6

Q ss_pred             CCCcEEEEEEeeCCCccEEEE-EeCCCc--EEEEECCCCeeEEEecCccceeEEEEEcCCCCEEEEEe----------CC
Q 004214           29 HKGVVSSILFHPDTDKSLLFS-GSDDAT--VRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAG----------RD   95 (768)
Q Consensus        29 h~~~V~~l~~spd~~~~~l~s-g~~dg~--I~iWd~~~~~~~~~l~~h~~~V~~l~fs~d~~~L~s~~----------~d   95 (768)
                      +.+....++..++++..+++. ...+|.  |.+||..+++.+.++.++..+  .++|+|||++|+.++          .|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            445555566788888754543 344444  677799999999988876654  589999999998765          36


Q ss_pred             CeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEEEeeCCcEEEEEEcCCceeeee
Q 004214           96 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ  175 (768)
Q Consensus        96 g~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~iwd~~~~~~~~~  175 (768)
                      +.|.+||..+++....++.+..          ...                                             
T Consensus        96 ~~v~v~D~~t~~~~~~i~~p~~----------~~~---------------------------------------------  120 (368)
T d1mdah_          96 DYVEVFDPVTFLPIADIELPDA----------PRF---------------------------------------------  120 (368)
T ss_dssp             EEEEEECTTTCCEEEEEEETTS----------CSC---------------------------------------------
T ss_pred             CeEEEEECCCCcEeeeecCCcc----------cee---------------------------------------------
Confidence            6788888888876665542110          000                                             


Q ss_pred             cCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEE
Q 004214          176 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL  255 (768)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  255 (768)
                                                                                   ........++|++ +++++
T Consensus       121 -------------------------------------------------------------~~g~~p~~~a~Sp-DGk~l  138 (368)
T d1mdah_         121 -------------------------------------------------------------SVGPRVHIIGNCA-SSACL  138 (368)
T ss_dssp             -------------------------------------------------------------CBSCCTTSEEECT-TSSCE
T ss_pred             -------------------------------------------------------------cccCCccceEECC-CCCEE
Confidence                                                                         0000012234443 44455


Q ss_pred             EEEe-CCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEe------eecccC
Q 004214          256 AVAT-NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV------GTGHMG  328 (768)
Q Consensus       256 ~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------~~~~~~  328 (768)
                      +++. .++.+.+||+.+++....+..+....      ..+.+...++..+.||.+.+|+.........      ...+..
T Consensus       139 ~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (368)
T d1mdah_         139 LFFLFGSSAAAGLSVPGASDDQLTKSASCFH------IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC  212 (368)
T ss_dssp             EEEECSSSCEEEEEETTTEEEEEEECSSCCC------CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB
T ss_pred             EEEeCCCCeEEEEECCCCcEeEEeeccCcce------EccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccccc
Confidence            4443 56888899998888887776654432      2223333477778888888888765432211      123334


Q ss_pred             cEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccccee--eEeeccCCCeEEEEEccCCCEEEEEeCCC----
Q 004214          329 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK--AVVAAHGKDINSLAVAPNDSLVCTGSQDR----  402 (768)
Q Consensus       329 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----  402 (768)
                      .+....+.+++. .+  ....+.+.++++................  ............++++|++..+++...++    
T Consensus       213 ~~~~~~~~~~g~-~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~  289 (368)
T d1mdah_         213 SSQAAQANYPGM-LV--WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC  289 (368)
T ss_dssp             CSCCEEETTTTE-EE--ECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCT
T ss_pred             ceeecccccCcE-EE--EecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCcee
Confidence            445566666643 22  2334555666654332111000000000  00000112234578899888776654332    


Q ss_pred             -----cEEEEeCCCCceEEEEeccCCCeEEEEEccCCC--EEEEeeCCCcEEEEeCCCCceeEEeecC
Q 004214          403 -----TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFEGH  463 (768)
Q Consensus       403 -----~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~t~~~d~~i~iwd~~~~~~~~~~~~~  463 (768)
                           .|.+||..+++.+..+. +...+.+++|+|||+  +++++..|+.|++||..+++.+.++...
T Consensus       290 ~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         290 LAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             TSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             ecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence                 59999999999888776 446788999999997  3566778899999999999999998743

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.57  E-value=3.7e-15  Score=150.73  Aligned_cols=148  Identities=14%  Similarity=0.111  Sum_probs=98.3

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCcccccc-
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL-  370 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-  370 (768)
                      +.++++. +. .+.++.+.+++......+..+..... ...+.++|+|+.+++++..+++|.+||+............. 
T Consensus       225 ~~~dGk~-~~-v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~  301 (441)
T d1qnia2         225 AVKAGNF-KT-IGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELR  301 (441)
T ss_dssp             HHHTTCC-BC-CTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGG
T ss_pred             EecCCCE-EE-eCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcc
Confidence            3455554 33 34467788887777666666665544 46789999999777888999999999987432111100010 


Q ss_pred             ceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC---------C-ceEEEE-----eccCCCeEEEEEccCCC
Q 004214          371 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD---------L-VSVVTF-----RGHKRGIWSVEFSPVDQ  435 (768)
Q Consensus       371 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~---------~-~~~~~~-----~~~~~~v~~v~~s~~~~  435 (768)
                      ..........-.....+|+++|..+.+...|..|..|++..         . ..+..+     .||...+.+.+++|||+
T Consensus       302 ~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk  381 (441)
T d1qnia2         302 DTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGK  381 (441)
T ss_dssp             GGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCC
T ss_pred             eEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCc
Confidence            11111111223345678999999999999999999999741         1 233333     46777777888999999


Q ss_pred             EEEEeeC
Q 004214          436 VVITASG  442 (768)
Q Consensus       436 ~l~t~~~  442 (768)
                      +|++++.
T Consensus       382 ~l~s~~k  388 (441)
T d1qnia2         382 WLVVLSK  388 (441)
T ss_dssp             EEEEEES
T ss_pred             EEEecCc
Confidence            9999943

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.54  E-value=3.5e-13  Score=137.85  Aligned_cols=286  Identities=10%  Similarity=-0.058  Sum_probs=171.6

Q ss_pred             ecCCCc--EEEEECCCCEEEEEEEcCCCcEEEEEEeeCCCccEEEE--------EeCCCcEEEEECCCCeeEEEecCccc
Q 004214            6 EGADRK--VLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS--------GSDDATVRVWDLLAKKCVATLDKHFS   75 (768)
Q Consensus         6 g~~dg~--i~vwd~~~~~~~~~l~gh~~~V~~l~~spd~~~~~l~s--------g~~dg~I~iWd~~~~~~~~~l~~h~~   75 (768)
                      ...+|.  |.+||..+++.+..+.++...  .++|+|||+..++++        |+.|++|.+||..+++++..+..|..
T Consensus        40 ~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~  117 (368)
T d1mdah_          40 AYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA  117 (368)
T ss_dssp             TTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred             ccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc
Confidence            344444  667799999999998888766  589999999844443        23478899999999999988764432


Q ss_pred             -------eeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccC
Q 004214           76 -------RVTSMAITSDGSTLISAG-RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRR  147 (768)
Q Consensus        76 -------~V~~l~fs~d~~~L~s~~-~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (768)
                             ....++|+|||++|+++. .++.+.+||+.+++....++.+....   ..+.+                    
T Consensus       118 ~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~---~~~~~--------------------  174 (368)
T d1mdah_         118 PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH---IHPGA--------------------  174 (368)
T ss_dssp             CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC---CEEEE--------------------
T ss_pred             ceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce---EccCC--------------------
Confidence                   234689999999998776 57999999999999888776533211   11111                    


Q ss_pred             CcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccce
Q 004214          148 SLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM  227 (768)
Q Consensus       148 ~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~  227 (768)
                        ...++..+.||.+..|+...............    ............+.+.  ..+.....+.+++++.........
T Consensus       175 --~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--g~~~~~~~~~v~~~~~~~~~~~~~  246 (368)
T d1mdah_         175 --AATHYLGSCPASLAASDLAAAPAAAGIVGAQC----TGAQNCSSQAAQANYP--GMLVWAVASSILQGDIPAAGATMK  246 (368)
T ss_dssp             --TTEEECCCCTTSCEEEECCSSCCCCEECCCCS----CTTSCBCSCCEEETTT--TEEEECBSSCCEEEECCSSCCEEE
T ss_pred             --CceEEEEcCCCCEEEEEecCCceeeeeeeccc----ccccccceeecccccC--cEEEEecCCCEEEEeecCCceEEE
Confidence              12567778888888888766622111100000    0000011111222222  223333444444444333211000


Q ss_pred             eeEEEee-----ecccCCceeEEEEecCCCCEEEEEeCC--------CcEEEEECCCceeeeeeeCCccceEEEeeeeec
Q 004214          228 ELILSKR-----LVGYNEEILDLKFLGEEEQYLAVATNI--------EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALS  294 (768)
Q Consensus       228 ~~~~~~~-----~~~~~~~i~~~~~~~~~~~~l~~~~~~--------~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~  294 (768)
                      .......     ..........+++++.....++....+        ..|.+||..+++.+..+.. ...+.++.  +++
T Consensus       247 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a--~sp  323 (368)
T d1mdah_         247 AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAII--AAQ  323 (368)
T ss_dssp             CCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEE--ECC
T ss_pred             eecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEE--ECC
Confidence            0000000     000011123355665444444433322        3589999999998877764 34566676  778


Q ss_pred             CCCE-EEEEEeCCCeEEEEeCCCceEEEeeeccc
Q 004214          295 SGKI-LIVTGSKDNSVRLWDSESRCCVGVGTGHM  327 (768)
Q Consensus       295 ~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  327 (768)
                      +++. +++++..++.|++||..+++.+..+....
T Consensus       324 DG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~  357 (368)
T d1mdah_         324 DGASDNYANSAGTEVLDIYDAASDQDQSSVELDK  357 (368)
T ss_dssp             SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred             CCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCC
Confidence            8764 46777789999999999999998877543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.52  E-value=6.3e-13  Score=134.18  Aligned_cols=257  Identities=12%  Similarity=0.069  Sum_probs=173.2

Q ss_pred             EEEEeCCCcEEEEECCCceeeeeeeC------------------------------CccceEEEeeeeecCCCEEEEEEe
Q 004214          255 LAVATNIEQVQVYDLSSMSCSYVLAG------------------------------HSEIVLCLDTCALSSGKILIVTGS  304 (768)
Q Consensus       255 l~~~~~~~~i~i~d~~~~~~~~~~~~------------------------------~~~~v~~l~~~~~~~~~~~l~~~~  304 (768)
                      +++++.+|+|.+|++.+++.+..+.-                              |.....+..  ..++|++++++..
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~--gtpDGr~lfV~d~   91 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTD--GRYDGKYLFINDK   91 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEET--TEEEEEEEEEEET
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceec--ccCCCCEEEEEcC
Confidence            55667799999999999987776532                              223333333  4577888677778


Q ss_pred             CCCeEEEEeCCCceEEEeee-cccCcEEEEEEecCCCcEEEEEeCCCeEE------------------EEeCCCCCCCCc
Q 004214          305 KDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIK------------------VWSFDGLSDDAE  365 (768)
Q Consensus       305 ~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~------------------iwd~~~~~~~~~  365 (768)
                      .++.|.++|+.++++...+. .+...+..++|+|+++...+++..+..+.                  .+|....     
T Consensus        92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~-----  166 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM-----  166 (441)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC-----
T ss_pred             CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc-----
Confidence            89999999999999887765 45678999999999876445444433332                  2443321     


Q ss_pred             cccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC-----------------------------------------CcE
Q 004214          366 QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-----------------------------------------RTA  404 (768)
Q Consensus       366 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----------------------------------------g~i  404 (768)
                           ....... -......++++|+|+++++++.+                                         +.+
T Consensus       167 -----~v~~qI~-v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~  240 (441)
T d1qnia2         167 -----DVAWQVI-VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVP  240 (441)
T ss_dssp             -----SEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCC
T ss_pred             -----eeeEEEe-cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcE
Confidence                 1111112 23456789999999999888754                                         234


Q ss_pred             EEEeCCCCceEEEEeccCCCeEEEEEccCCCEEE-EeeCCCcEEEEeCCCCce--------eEEeecC---CCcEEEEEE
Q 004214          405 CVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI-TASGDKTIKIWSISDGSC--------LKTFEGH---TSSVLRASF  472 (768)
Q Consensus       405 ~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-t~~~d~~i~iwd~~~~~~--------~~~~~~~---~~~v~~~~~  472 (768)
                      .+++....+.+..+..... ...+.++|||++++ ++..+++|.+||+.+...        ...+.++   .-.....+|
T Consensus       241 vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~f  319 (441)
T d1qnia2         241 VVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTF  319 (441)
T ss_dssp             EEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEE
T ss_pred             EEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccccee
Confidence            4444444555666665443 57899999999775 567799999999864221        1111111   123455689


Q ss_pred             EeCCCEEEEEeCCCcEEEEECCC----------CeEEEEe-----ccCCCcEEEEEEcCCCCEEEEEe
Q 004214          473 LTRGAQIVSCGADGLVKLWTVRT----------GECIATY-----DKHEDKIWALAVGKKTEMFATGG  525 (768)
Q Consensus       473 s~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~-----~~~~~~v~~l~~s~~~~~l~s~~  525 (768)
                      .++|+...+...|..|..|++..          ...+..+     .+|...+.+.+++|||++|++++
T Consensus       320 d~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         320 DGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             CSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             cCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            99998888888999999999742          1234444     35655566678999999999994

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.49  E-value=4.6e-12  Score=134.13  Aligned_cols=70  Identities=14%  Similarity=0.280  Sum_probs=52.3

Q ss_pred             EEEEeeCCCccEEEEEeCCCcEEEEECCCCeeEEEec-----CccceeEEEEEcCCCCEEEEEeC---------CCeEEE
Q 004214           35 SILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD-----KHFSRVTSMAITSDGSTLISAGR---------DKVVNL  100 (768)
Q Consensus        35 ~l~~spd~~~~~l~sg~~dg~I~iWd~~~~~~~~~l~-----~h~~~V~~l~fs~d~~~L~s~~~---------dg~i~v  100 (768)
                      .+.|.+++.+  +.  ..|+.|.+||+.+++....+.     .|...|.++.|||||++|+.++.         ++.+.+
T Consensus        21 ~~~W~~d~~~--~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          21 SLRWISDHEY--LY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCEECSSSEE--EE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CCEeCCCCEE--EE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence            4679998865  44  457889999999998876554     45678999999999999998763         345556


Q ss_pred             EECCCCee
Q 004214          101 WDLRDYSC  108 (768)
Q Consensus       101 Wd~~~~~~  108 (768)
                      ||+.+++.
T Consensus        97 ~d~~~~~~  104 (470)
T d2bgra1          97 YDLNKRQL  104 (470)
T ss_dssp             EETTTTEE
T ss_pred             EECCCCcc
Confidence            66655543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.14  E-value=6.8e-09  Score=99.11  Aligned_cols=235  Identities=9%  Similarity=-0.036  Sum_probs=149.5

Q ss_pred             eEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC
Q 004214          285 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA  364 (768)
Q Consensus       285 v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  364 (768)
                      ...++  ..+++..+++..+..+.+..++............-......+++++++. ++++....+.+++++-....   
T Consensus        16 P~~va--vd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~---   89 (260)
T d1rwia_          16 PSGVA--VDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQ---   89 (260)
T ss_dssp             EEEEE--ECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCC---
T ss_pred             CCEEE--EcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCC-EEEeeeeeceeeeeeeccce---
Confidence            35555  6666665444455667777777665433332222223456788999865 66666666666655433211   


Q ss_pred             ccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCC
Q 004214          365 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK  444 (768)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~  444 (768)
                             . ...........+++++++++++++-..+..+..++...................++++|+++++++...++
T Consensus        90 -------~-~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~  161 (260)
T d1rwia_          90 -------T-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNN  161 (260)
T ss_dssp             -------E-ECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGT
T ss_pred             -------e-eeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccc
Confidence                   1 11111234578999999999888776777788887655443332222234567899999999988888888


Q ss_pred             cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 004214          445 TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG  524 (768)
Q Consensus       445 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~  524 (768)
                      .|..+|.............-.....+++.++|+++++....+.|..++.............-....+|+++++|..+++-
T Consensus       162 ~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad  241 (260)
T d1rwia_         162 RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVAD  241 (260)
T ss_dssp             EEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEE
T ss_pred             cccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEE
Confidence            99999976544333333455667889999999988888778888888765543222222233467899999999988886


Q ss_pred             eCCCcEEEE
Q 004214          525 GSDALVNLW  533 (768)
Q Consensus       525 ~~dg~v~vw  533 (768)
                      ..++.|+..
T Consensus       242 ~~~~rI~~i  250 (260)
T d1rwia_         242 RGNDRVVKL  250 (260)
T ss_dssp             GGGTEEEEE
T ss_pred             CCCCEEEEE
Confidence            666655443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.08  E-value=1.6e-08  Score=101.79  Aligned_cols=280  Identities=9%  Similarity=0.072  Sum_probs=154.5

Q ss_pred             EEEEEe--CCCcEEE--EECCCceeee--ee-eCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCC-ceEEEee-e
Q 004214          254 YLAVAT--NIEQVQV--YDLSSMSCSY--VL-AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVG-T  324 (768)
Q Consensus       254 ~l~~~~--~~~~i~i--~d~~~~~~~~--~~-~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~-~  324 (768)
                      .|++|+  ..+.|++  +|.+++....  .. ......+..++  +.++++. |.++. .+.+..|.+.. +...... .
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la--~s~d~~~-ly~~~-~~~~~~~~i~~~~~~~~~~~~   79 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMT--FDHERKN-IYGAA-MKKWSSFAVKSPTEIVHEASH   79 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEE--ECTTSSE-EEEEE-BTEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEE--EcCCCCE-EEEEe-CCcEEEEEEeCCCCeEEEeee
Confidence            355554  3456655  4455554321  11 12233344454  6677776 55444 35677776543 2222211 1


Q ss_pred             cccCcEEEEEEecCCCcEEEEEe--CCCeEEEEeCCCCCCCCc-------cccccceeeEeeccCCCeEEEEEccCCCEE
Q 004214          325 GHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFDGLSDDAE-------QPMNLKAKAVVAAHGKDINSLAVAPNDSLV  395 (768)
Q Consensus       325 ~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  395 (768)
                      ........++++++++.++++..  ..++|..+.+........       .................+.++.|+|+|+++
T Consensus        80 ~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l  159 (365)
T d1jofa_          80 PIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYL  159 (365)
T ss_dssp             ECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred             cCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEE
Confidence            12233445677777664434332  245555544332110000       000000111111223457899999999988


Q ss_pred             EEEeC-CCcEEEEeCCCC-ceE--EEEe--ccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCceeEEee-------
Q 004214          396 CTGSQ-DRTACVWRLPDL-VSV--VTFR--GHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSCLKTFE-------  461 (768)
Q Consensus       396 ~~~~~-dg~i~i~d~~~~-~~~--~~~~--~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~-------  461 (768)
                      ++++. ...|.+|+.... ...  ....  ........++|+|+++++++.. .+++|.+|++..+.......       
T Consensus       160 ~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~  239 (365)
T d1jofa_         160 YSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI  239 (365)
T ss_dssp             EEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred             EEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccc
Confidence            88764 347888876543 222  2222  2345788999999999886655 57899999987664322111       


Q ss_pred             ------------cCCCcEEEEEEEeCCCEEEEEeC------CCcEEEEECCCCeEEE------EeccCCCcEEEEEEcC-
Q 004214          462 ------------GHTSSVLRASFLTRGAQIVSCGA------DGLVKLWTVRTGECIA------TYDKHEDKIWALAVGK-  516 (768)
Q Consensus       462 ------------~~~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~------~~~~~~~~v~~l~~s~-  516 (768)
                                  .+......+.++|+|++|+++..      .+.|..|++.....+.      ..........+++++| 
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~  319 (365)
T d1jofa_         240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW  319 (365)
T ss_dssp             CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred             cccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCC
Confidence                        11224567899999999987743      2237777765432221      1112234457799998 


Q ss_pred             CCCEEEEE-eCCCcEEEEEcCC
Q 004214          517 KTEMFATG-GSDALVNLWHDST  537 (768)
Q Consensus       517 ~~~~l~s~-~~dg~v~vw~~~~  537 (768)
                      +|++|+++ ..++.|.+|++..
T Consensus       320 ~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         320 SDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CTTEEEEECSSSCEEEEEEEET
T ss_pred             CCCEEEEEeCCCCeEEEEEEeC
Confidence            89987766 4678999998754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.04  E-value=3e-07  Score=88.44  Aligned_cols=235  Identities=12%  Similarity=0.184  Sum_probs=160.8

Q ss_pred             eEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec------ccCcEEEEEEecCCCcEEEEE-eCCCeEEEEeC
Q 004214          285 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG------HMGAVGAVAFSKKLQNFLVSG-SSDHTIKVWSF  357 (768)
Q Consensus       285 v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~  357 (768)
                      ...++  ..+++. ++++-..++.|++||.+ +..+..+..      .......+++.++...++++. +.++.|..++.
T Consensus        25 P~gva--vd~dg~-i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (279)
T d1q7fa_          25 PSGVA--VNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ  100 (279)
T ss_dssp             EEEEE--ECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred             ccEEE--EcCCCC-EEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc
Confidence            34554  556555 46666677889999865 555544421      112345566666544444433 44567777765


Q ss_pred             CCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe--ccCCCeEEEEEccCCC
Q 004214          358 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQ  435 (768)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~v~~s~~~~  435 (768)
                      ...          ...............+++.++|.++++....+.+.+++. +++.+..+.  .+......+++.++++
T Consensus       101 ~g~----------~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~  169 (279)
T d1q7fa_         101 YGQ----------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQE  169 (279)
T ss_dssp             TSC----------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred             ccc----------ceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeecccee
Confidence            421          011111223456788999999998888888888888885 455555553  3556788899999999


Q ss_pred             EEEEeeCCCcEEEEeCCCCceeEEee--cCCCcEEEEEEEeCCCEEEEEeC-CCcEEEEECCCCeEEEEeccC--CCcEE
Q 004214          436 VVITASGDKTIKIWSISDGSCLKTFE--GHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYDKH--EDKIW  510 (768)
Q Consensus       436 ~l~t~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~--~~~v~  510 (768)
                      ++++....+.|++||. +|+.+.++.  +.......+++.++|+.+++-.. ++.|.+|+ .+|+.+.++...  ....+
T Consensus       170 i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~  247 (279)
T d1q7fa_         170 IFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCF  247 (279)
T ss_dssp             EEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEE
T ss_pred             EEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEe
Confidence            9999888899999996 677777774  34556789999999997766543 45799998 578888777432  34578


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          511 ALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       511 ~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      .+++.|+|.+++ +..+..|++|+...
T Consensus       248 ~vav~~dG~l~V-~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         248 DVALMDDGSVVL-ASKDYRLYIYRYVQ  273 (279)
T ss_dssp             EEEEETTTEEEE-EETTTEEEEEECSC
T ss_pred             EEEEeCCCcEEE-EeCCCeEEEEEeee
Confidence            999999997655 45788999998754

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.00  E-value=2.4e-07  Score=92.86  Aligned_cols=280  Identities=9%  Similarity=0.020  Sum_probs=152.5

Q ss_pred             eEEEE--ecCeEEEEeeccCcccceeeEEEee-ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc-eeeeee-e
Q 004214          205 LLCVT--ADQQLLLYTTVEVPEKKMELILSKR-LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-SCSYVL-A  279 (768)
Q Consensus       205 l~~~~--~dg~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~-~  279 (768)
                      |++++  ..+.|+.+.......   .+..... .......+.-+++++ +++.+.++.. +.+..|.+... ...... .
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~---~l~~~~~~~~~~~~~~s~la~s~-d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~   79 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKL---TCKLIKRTEIPQDEPISWMTFDH-ERKNIYGAAM-KKWSSFAVKSPTEIVHEASH   79 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTT---EEEEEEEEECCTTCCCSEEEECT-TSSEEEEEEB-TEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeecCCCCEEEEEEcCCCC---eEEEeeeeeccCCCCCCEEEEcC-CCCEEEEEeC-CcEEEEEEeCCCCeEEEeee
Confidence            44554  245677666655432   2222222 223344556688875 5566666544 66777766532 222111 1


Q ss_pred             CCccceEEEeeeeecCCCEEEEEEe--CCCeEEEEeCCC-------------ceE---EEe-eecccCcEEEEEEecCCC
Q 004214          280 GHSEIVLCLDTCALSSGKILIVTGS--KDNSVRLWDSES-------------RCC---VGV-GTGHMGAVGAVAFSKKLQ  340 (768)
Q Consensus       280 ~~~~~v~~l~~~~~~~~~~~l~~~~--~dg~i~iwd~~~-------------~~~---~~~-~~~~~~~v~~~~~~~~~~  340 (768)
                      ........+.  +.++++.++++..  ..+.|..+.+..             +..   ... .......+.++.|+|+|+
T Consensus        80 ~~~~~p~~v~--~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~  157 (365)
T d1jofa_          80 PIGGHPRAND--ADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET  157 (365)
T ss_dssp             ECCSSGGGGC--TTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred             cCCCCcEEEE--ECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCC
Confidence            1111111222  4445544333322  234555443221             111   111 111233578999999988


Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceEEEEe
Q 004214          341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVVTFR  419 (768)
Q Consensus       341 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~  419 (768)
                      .++++......|.+|++......     ...............+.++|+|+++++.+.. .+++|.+|++..........
T Consensus       158 ~l~v~d~g~d~v~~~~~~~~g~~-----~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~  232 (365)
T d1jofa_         158 YLYSADLTANKLWTHRKLASGEV-----ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYT  232 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCE-----EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred             EEEEeeCCCCEEEEEEccCCCce-----eeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEE
Confidence            66665556678888886532110     0011111122356789999999999886655 57889999987654322111


Q ss_pred             -------------------ccCCCeEEEEEccCCCEEEEeeC------CCcEEEEeCCCCceeEEe------ecCCCcEE
Q 004214          420 -------------------GHKRGIWSVEFSPVDQVVITASG------DKTIKIWSISDGSCLKTF------EGHTSSVL  468 (768)
Q Consensus       420 -------------------~~~~~v~~v~~s~~~~~l~t~~~------d~~i~iwd~~~~~~~~~~------~~~~~~v~  468 (768)
                                         .+......+.++|+|++|+++..      .+.|..|++.....+...      ........
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~  312 (365)
T d1jofa_         233 HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSN  312 (365)
T ss_dssp             EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCC
T ss_pred             eeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCcc
Confidence                               01123567899999999988742      223777777543322211      12234556


Q ss_pred             EEEEEe-CCCEEEEEe-CCCcEEEEECCCC
Q 004214          469 RASFLT-RGAQIVSCG-ADGLVKLWTVRTG  496 (768)
Q Consensus       469 ~~~~s~-~~~~l~s~~-~dg~i~iwd~~~~  496 (768)
                      .++++| +|++|+++. .++.|.+|+++..
T Consensus       313 ~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         313 AVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            789998 799887765 5789999987644

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.95  E-value=3.7e-07  Score=89.20  Aligned_cols=221  Identities=11%  Similarity=0.055  Sum_probs=141.9

Q ss_pred             CCeEEEEeCCCceEEEeeecc----cCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeec-cC
Q 004214          306 DNSVRLWDSESRCCVGVGTGH----MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HG  380 (768)
Q Consensus       306 dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~  380 (768)
                      +|.|..||..++.........    .+.-..++|.+++. .++++...+.|..++.........       .....+ .-
T Consensus        45 ~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~-~l~vad~~~~i~~~~~~g~~~~~~-------~~~~~g~~~  116 (314)
T d1pjxa_          45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN-QLFVADMRLGLLVVQTDGTFEEIA-------KKDSEGRRM  116 (314)
T ss_dssp             CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS-EEEEEETTTEEEEEETTSCEEECC-------SBCTTSCBC
T ss_pred             CCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCC-EEEEEECCCeEEEEeCCCcEEEEE-------ecccccccc
Confidence            467999998887654433222    22356899999976 466666667788888764311000       000000 01


Q ss_pred             CCeEEEEEccCCCEEEEEeC---------------CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCC-----EEEEe
Q 004214          381 KDINSLAVAPNDSLVCTGSQ---------------DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ-----VVITA  440 (768)
Q Consensus       381 ~~i~~~~~s~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~-----~l~t~  440 (768)
                      ...+.++++++|++.++-..               .|.|..++. +++.... ...-...+.++|+|++.     +.++-
T Consensus       117 ~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~-~~~~~~pNGi~~~~d~d~~~~~lyv~d  194 (314)
T d1pjxa_         117 QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAE  194 (314)
T ss_dssp             BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEe-eCCcceeeeeEECCCCCcceeEEEEEe
Confidence            23578999999988876432               234444443 3333332 22334457899999864     55555


Q ss_pred             eCCCcEEEEeCCCCceeE------Eeec-CCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEE
Q 004214          441 SGDKTIKIWSISDGSCLK------TFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA  513 (768)
Q Consensus       441 ~~d~~i~iwd~~~~~~~~------~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~  513 (768)
                      +..+.|..||+.....+.      .+.+ +....-.+++.++|+..++....+.|.+||.+.++.+..+..+...+++++
T Consensus       195 ~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~a  274 (314)
T d1pjxa_         195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLH  274 (314)
T ss_dssp             TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEE
T ss_pred             ecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEE
Confidence            677889999875433222      2222 223456799999999888877889999999988887777776677889999


Q ss_pred             EcCCCCE-EEEEeCCCcEEEEEcC
Q 004214          514 VGKKTEM-FATGGSDALVNLWHDS  536 (768)
Q Consensus       514 ~s~~~~~-l~s~~~dg~v~vw~~~  536 (768)
                      |.|+++. +++.+.+|.|...+..
T Consensus       275 fg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         275 FKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EeCCCCEEEEEECCCCcEEEEECC
Confidence            9999974 5666777877776654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.94  E-value=8.4e-07  Score=85.16  Aligned_cols=239  Identities=12%  Similarity=0.152  Sum_probs=158.3

Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeC------CccceEEEeeeeecCCCEEEE-EEeCCCeEEEEe
Q 004214          241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG------HSEIVLCLDTCALSSGKILIV-TGSKDNSVRLWD  313 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~------~~~~v~~l~~~~~~~~~~~l~-~~~~dg~i~iwd  313 (768)
                      ....+++.+ +++++++-..+..|++||.. +..+..+..      .......+.  ........++ ..+.++.|..++
T Consensus        24 ~P~gvavd~-dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~i~~~~   99 (279)
T d1q7fa_          24 EPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVA--VVRNSGDIIVTERSPTHQIQIYN   99 (279)
T ss_dssp             CEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEE--EETTTTEEEEEECGGGCEEEEEC
T ss_pred             CccEEEEcC-CCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCccccccccccc--ccccccccceeccCCcccccccc
Confidence            346777765 56666666677889999965 554444421      111122332  3344333343 344556788887


Q ss_pred             CCCceEEEee-ecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214          314 SESRCCVGVG-TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND  392 (768)
Q Consensus       314 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  392 (768)
                      .. +.....+ .........+++.+++. ++++....+.+.+++....         .....-...+......+++.+++
T Consensus       100 ~~-g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~g~---------~~~~~g~~~~~~~~~~i~~d~~g  168 (279)
T d1q7fa_         100 QY-GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGN---------VLHKFGCSKHLEFPNGVVVNDKQ  168 (279)
T ss_dssp             TT-SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSC---------EEEEEECTTTCSSEEEEEECSSS
T ss_pred             cc-ccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccCCc---------eeecccccccccccceeeeccce
Confidence            65 4444443 34456678899998876 6677677777888875421         10111123355677889999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEEe--ccCCCeEEEEEccCCCEEEEeeC-CCcEEEEeCCCCceeEEeecC--CCcE
Q 004214          393 SLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCLKTFEGH--TSSV  467 (768)
Q Consensus       393 ~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~--~~~v  467 (768)
                      +++++....+.|++||. +++.+..+.  +.......|++.|+|+++++-.. ++.|.+|+ .+|+.+.++...  ....
T Consensus       169 ~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p  246 (279)
T d1q7fa_         169 EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQC  246 (279)
T ss_dssp             EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCE
T ss_pred             eEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCE
Confidence            99999888999999996 456666653  34456789999999998877543 45799999 478888877533  3457


Q ss_pred             EEEEEEeCCCEEEEEeCCCcEEEEECCCCe
Q 004214          468 LRASFLTRGAQIVSCGADGLVKLWTVRTGE  497 (768)
Q Consensus       468 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  497 (768)
                      ..+++.|+|.+ ++++.++.|++|......
T Consensus       247 ~~vav~~dG~l-~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         247 FDVALMDDGSV-VLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEEEETTTEE-EEEETTTEEEEEECSCCC
T ss_pred             eEEEEeCCCcE-EEEeCCCeEEEEEeeeec
Confidence            88999999965 455678899999887654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.92  E-value=6.7e-07  Score=87.05  Aligned_cols=229  Identities=9%  Similarity=0.017  Sum_probs=153.1

Q ss_pred             eEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCC
Q 004214          285 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA  364 (768)
Q Consensus       285 v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  364 (768)
                      +..++  +.+++. ++++...+++|..|+.....  ..+......+.+++|.++|. ++++...++.+..|+......  
T Consensus        30 ~e~iA--v~pdG~-l~vt~~~~~~I~~i~p~g~~--~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~--  101 (302)
T d2p4oa1          30 LENLA--SAPDGT-IFVTNHEVGEIVSITPDGNQ--QIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDG--  101 (302)
T ss_dssp             EEEEE--ECTTSC-EEEEETTTTEEEEECTTCCE--EEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTS--
T ss_pred             cCCEE--ECCCCC-EEEEeCCCCEEEEEeCCCCE--EEEEcCCCCcceEEEcCCCC-eEEEecCCceEEEEEeccccc--
Confidence            45565  666665 58888889999999866542  33445667899999999976 788888888888887653211  


Q ss_pred             ccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEec----------cCCCeEEEEEccCC
Q 004214          365 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG----------HKRGIWSVEFSPVD  434 (768)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~~~v~~v~~s~~~  434 (768)
                           ..............+.+++.++++++++.+.++.+..++...+........          .......+.+.. +
T Consensus       102 -----~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~  175 (302)
T d2p4oa1         102 -----TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-N  175 (302)
T ss_dssp             -----CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-T
T ss_pred             -----ceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-C
Confidence                 001111223445688999999999999988899999999887654433321          112345566654 4


Q ss_pred             CEEEEeeCCCcEEEEeCCCCceeEE--eecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCe-EEEEeccCCCcEEE
Q 004214          435 QVVITASGDKTIKIWSISDGSCLKT--FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-CIATYDKHEDKIWA  511 (768)
Q Consensus       435 ~~l~t~~~d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~  511 (768)
                      .++++.+..+.|..++.........  ..........++|.++|++.++...++.|..++..... .+......-...++
T Consensus       176 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~  255 (302)
T d2p4oa1         176 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTA  255 (302)
T ss_dssp             EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEE
T ss_pred             ceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceE
Confidence            4566667788898888765432211  11123345569999999988888888999999865332 23333434456889


Q ss_pred             EEE---cCCCCEEEEEeCC
Q 004214          512 LAV---GKKTEMFATGGSD  527 (768)
Q Consensus       512 l~~---s~~~~~l~s~~~d  527 (768)
                      ++|   ++|++.|..++..
T Consensus       256 vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         256 VAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEECCSTTTTTEEEEEECT
T ss_pred             EEEcCCCCCCCEEEEECCC
Confidence            999   6788888766544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.88  E-value=2.6e-07  Score=87.78  Aligned_cols=236  Identities=10%  Similarity=0.013  Sum_probs=145.0

Q ss_pred             ceeEEEEecCCCCEEEEE-eCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceE
Q 004214          241 EILDLKFLGEEEQYLAVA-TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC  319 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  319 (768)
                      ...++++.+ +++.+++. ...+.+..++...................++  +.+++. ++++....+.+++++..+...
T Consensus        15 ~P~~vavd~-dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gva--v~~~g~-i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          15 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLA--VDGAGT-VYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEE--ECTTCC-EEEEETTTEEEEECTTCSCCE
T ss_pred             CCCEEEEcC-CCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEE--EcCCCC-EEEeeeeeceeeeeeecccee
Confidence            346777764 55555544 4556777776654433322222122234444  445554 466666666666666555544


Q ss_pred             EEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEe
Q 004214          320 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS  399 (768)
Q Consensus       320 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  399 (768)
                      +.... .......+++.+++. ++++-..+..+..++......          ............+++++|+++++++..
T Consensus        91 ~~~~~-~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~----------~~~~~~~~~~p~~i~~~~~g~~~v~~~  158 (260)
T d1rwia_          91 VLPFD-GLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQ----------TVLPFTGLNDPDGVAVDNSGNVYVTDT  158 (260)
T ss_dssp             ECCCC-SCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSC----------EECCCCSCCSCCEEEECTTCCEEEEEG
T ss_pred             eeeee-eeeecccccccccce-eEeecccccccccccccccee----------eeeeecccCCcceeeecCCCCEeeecc
Confidence            43332 234568899999865 666666667677776543211          011111123457899999999888888


Q ss_pred             CCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe-ecCCCcEEEEEEEeCCCE
Q 004214          400 QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF-EGHTSSVLRASFLTRGAQ  478 (768)
Q Consensus       400 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~  478 (768)
                      .++.|..++...................+++.++|+++++....+.|..++..... ...+ ...-.....+++.++|+.
T Consensus       159 ~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l  237 (260)
T d1rwia_         159 DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTV  237 (260)
T ss_dssp             GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCE
T ss_pred             ccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCE
Confidence            88899999977654443333445567899999999998888888889988865443 2222 223356788999999987


Q ss_pred             EEEEeCCCcEEEEEC
Q 004214          479 IVSCGADGLVKLWTV  493 (768)
Q Consensus       479 l~s~~~dg~i~iwd~  493 (768)
                      +++-..++.|+.++.
T Consensus       238 ~vad~~~~rI~~i~~  252 (260)
T d1rwia_         238 YVADRGNDRVVKLTS  252 (260)
T ss_dssp             EEEEGGGTEEEEECC
T ss_pred             EEEECCCCEEEEEeC
Confidence            777666666665543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=1.2e-06  Score=83.58  Aligned_cols=237  Identities=11%  Similarity=0.041  Sum_probs=146.8

Q ss_pred             cEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC--eEEEEeCCCceEEEeeecccCcEEEEEEecCCC
Q 004214          263 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN--SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ  340 (768)
Q Consensus       263 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  340 (768)
                      .|.+.|.......... .+...+...+  ++|+|+.+.++....+  .+.+.+...+... .+..+.+......|+|+|.
T Consensus        20 ~l~i~d~dG~~~~~l~-~~~~~~~sP~--wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~   95 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVH-RSPQPLMSPA--WSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGS   95 (269)
T ss_dssp             EEEEEETTSCSCEEEE-EESSCEEEEE--ECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSS
T ss_pred             EEEEEcCCCCCcEEEe-cCCCceeeeE--ECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCC
Confidence            5777787655544443 3455566665  8899998555544444  4666666665543 3455678888999999998


Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE-eCCC--cEEEEeCCCCceEEE
Q 004214          341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDR--TACVWRLPDLVSVVT  417 (768)
Q Consensus       341 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~  417 (768)
                      .++.....++...++......         .................+++++..++.. ..+|  .|.+.++..+... .
T Consensus        96 ~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~  165 (269)
T d2hqsa1          96 KLAFALSKTGSLNLYVMDLAS---------GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-R  165 (269)
T ss_dssp             EEEEEECTTSSCEEEEEETTT---------CCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-E
T ss_pred             eeeEeeecCCccceeeccccc---------ccceeeeeccccccccccccccccceecccccCCceEeeeecccccce-e
Confidence            766665555554444333211         1111222233344455677766655544 3455  4555666555433 3


Q ss_pred             EeccCCCeEEEEEccCCCEEEEeeCCC-c--EEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeC---CCcEEEE
Q 004214          418 FRGHKRGIWSVEFSPVDQVVITASGDK-T--IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA---DGLVKLW  491 (768)
Q Consensus       418 ~~~~~~~v~~v~~s~~~~~l~t~~~d~-~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---dg~i~iw  491 (768)
                      +..+........|+|+++.++..+.++ .  +.+.+...+..  ....+........|+|||++|+-.+.   ...|+++
T Consensus       166 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~  243 (269)
T d2hqsa1         166 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLV  243 (269)
T ss_dssp             CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred             eecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEE
Confidence            344566777889999999888765543 3  44455544433  33345666778899999999875544   3478999


Q ss_pred             ECCCCeEEEEeccCCCcEEEEEEcC
Q 004214          492 TVRTGECIATYDKHEDKIWALAVGK  516 (768)
Q Consensus       492 d~~~~~~~~~~~~~~~~v~~l~~s~  516 (768)
                      ++..+.. ..+....+.+...+|||
T Consensus       244 ~~dg~~~-~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         244 STDGRFK-ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             ETTSCCE-EECCCSSSEEEEEEECC
T ss_pred             ECCCCCE-EEEeCCCCcEEeEEeCC
Confidence            9977665 44555677888899998

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.7e-06  Score=89.36  Aligned_cols=374  Identities=11%  Similarity=0.103  Sum_probs=192.5

Q ss_pred             cCCCcEEEEECCCCEEEEEEEcC---CCcEEEEEEeeCCCccEEEEE-------eCCCcEEEEECCCCeeEEE--ecCcc
Q 004214            7 GADRKVLVWDVDGGFCTHYFKGH---KGVVSSILFHPDTDKSLLFSG-------SDDATVRVWDLLAKKCVAT--LDKHF   74 (768)
Q Consensus         7 ~~dg~i~vwd~~~~~~~~~l~gh---~~~V~~l~~spd~~~~~l~sg-------~~dg~I~iWd~~~~~~~~~--l~~h~   74 (768)
                      ..+|.|.+||+.+++....+..+   .-.+....||||+++.++.+-       +..+.+.++|+.++.....  .....
T Consensus        34 ~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~  113 (465)
T d1xfda1          34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN  113 (465)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS
T ss_pred             eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCc
Confidence            35789999999888754444432   236778889999998333321       3457899999988875433  22334


Q ss_pred             ceeEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccCCcceEEE
Q 004214           75 SRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI  154 (768)
Q Consensus        75 ~~V~~l~fs~d~~~L~s~~~dg~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (768)
                      +.+....|||||+.||-.. ++.|.+.+..++..++...                                         
T Consensus       114 ~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~-----------------------------------------  151 (465)
T d1xfda1         114 AKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVS-----------------------------------------  151 (465)
T ss_dssp             CCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEEC-----------------------------------------
T ss_pred             cccceeeeccCCceEEEEe-cceEEEEecCCCceEEEec-----------------------------------------
Confidence            5567789999999998776 5678888876654332211                                         


Q ss_pred             EeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEec-CeEEEEeeccCcccceeeEEEe
Q 004214          155 TVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD-QQLLLYTTVEVPEKKMELILSK  233 (768)
Q Consensus       155 ~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~~~~~~~~~~~~~~~~~~~  233 (768)
                       .+..+.+. .-.. .-+.            .....+.-....++|++..++....| ..+..+.+.....         
T Consensus       152 -~g~~~~i~-nG~~-d~vy------------eee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~---------  207 (465)
T d1xfda1         152 -TGKEGVIY-NGLS-DWLY------------EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG---------  207 (465)
T ss_dssp             -CCBTTTEE-EEEC-CHHH------------HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS---------
T ss_pred             -ccCcceee-cccc-chhh------------hhhhccccceEEECCCCCeEEEEEecccccceeecccccc---------
Confidence             11111100 0000 0000            00001122455688999888776643 3444444332111         


Q ss_pred             eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee------CCccceEEEeeeeecCCCEEEEEE-eCC
Q 004214          234 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA------GHSEIVLCLDTCALSSGKILIVTG-SKD  306 (768)
Q Consensus       234 ~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~------~~~~~v~~l~~~~~~~~~~~l~~~-~~d  306 (768)
                         .....+..+.+-.+....     ....+.++|+.++.......      .....+..+.  +.+++.. ++.. ..+
T Consensus       208 ---~~~p~~~~~~Yp~~G~~n-----p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~--W~~d~~~-~~~~~nR~  276 (465)
T d1xfda1         208 ---SIYPTVKPYHYPKAGSEN-----PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVK--WATSTKV-AVTWLNRA  276 (465)
T ss_dssp             ---SSSCCCEEEECCBTTSCC-----CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEE--ESSSSEE-EEEEEETT
T ss_pred             ---cccceeeeeeccccCCCC-----CceeEEEEecCCCcEEEEEeccCcCccccceeeeeE--EcCCCeE-EEEEEccc
Confidence               001112222221111110     01246677876654432211      1222344453  4454443 4443 323


Q ss_pred             ---CeEEEEeCCCceEEEeeecccC-c----EEEEEEecCCCcEEEE-Ee-CCC--eEEEEeCCCCCCCCccccccceee
Q 004214          307 ---NSVRLWDSESRCCVGVGTGHMG-A----VGAVAFSKKLQNFLVS-GS-SDH--TIKVWSFDGLSDDAEQPMNLKAKA  374 (768)
Q Consensus       307 ---g~i~iwd~~~~~~~~~~~~~~~-~----v~~~~~~~~~~~~l~s-~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~  374 (768)
                         ..+.++|..++++......+.. .    -....|+|+|+.++.. .+ .+|  .+....+.......    ......
T Consensus       277 q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~----~~~~~~  352 (465)
T d1xfda1         277 QNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS----SNDNIQ  352 (465)
T ss_dssp             SCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCS----SSCCCC
T ss_pred             cccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccC----CCceeE
Confidence               2688889999887665543221 1    1345788998865432 22 222  23333322111000    000111


Q ss_pred             EeeccCCCeEE-EEEccCCCEEE-EEeCCC--cEEEE--eCCCCceEEEEe---ccCCCeEEEEEccCCCEEEEeeCC--
Q 004214          375 VVAAHGKDINS-LAVAPNDSLVC-TGSQDR--TACVW--RLPDLVSVVTFR---GHKRGIWSVEFSPVDQVVITASGD--  443 (768)
Q Consensus       375 ~~~~~~~~i~~-~~~s~~~~~l~-~~~~dg--~i~i~--d~~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~t~~~d--  443 (768)
                      .+....-.|.. +.|+++++.+. ++..++  .-++|  ++........+.   .......++.|||++++++..+..  
T Consensus       353 ~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~  432 (465)
T d1xfda1         353 SITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPG  432 (465)
T ss_dssp             BSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSS
T ss_pred             EeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCC
Confidence            11122233444 36888776654 444332  23344  443332222111   234467799999999998855443  


Q ss_pred             -CcEEEEeCCCCceeEEee
Q 004214          444 -KTIKIWSISDGSCLKTFE  461 (768)
Q Consensus       444 -~~i~iwd~~~~~~~~~~~  461 (768)
                       -.+.+++..+++.+..++
T Consensus       433 ~P~~~~~~~~~~~~~~~Le  451 (465)
T d1xfda1         433 VPMVTVHNTTDKKKMFDLE  451 (465)
T ss_dssp             SCCEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEc
Confidence             467888888888888776

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=1.6e-06  Score=82.74  Aligned_cols=127  Identities=12%  Similarity=0.008  Sum_probs=80.1

Q ss_pred             cCCCEEEEEEeCCC--eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccc
Q 004214          294 SSGKILIVTGSKDN--SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK  371 (768)
Q Consensus       294 ~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  371 (768)
                      ..+...+++...+|  .|.+.+...+.... ...+........++|++..++.+....+...+|......          
T Consensus       136 ~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~----------  204 (269)
T d2hqsa1         136 PDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT----------  204 (269)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT----------
T ss_pred             cccccceecccccCCceEeeeeccccccee-eecccccccccccccccceeEEEeecCCceeeeEeeccc----------
Confidence            34444455554454  34555555554332 334556677889999988766666667776666654321          


Q ss_pred             eeeEeeccCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceEEEEeccCCCeEEEEEcc
Q 004214          372 AKAVVAAHGKDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLVSVVTFRGHKRGIWSVEFSP  432 (768)
Q Consensus       372 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~  432 (768)
                      .......+........|+|||+.|+..+..   ..|+++++..+.. ..+......+...+|||
T Consensus       205 ~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         205 GGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECC
T ss_pred             ccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCC
Confidence            111222344556778999999998866543   3688999876654 44555667788889998

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.76  E-value=4e-06  Score=81.55  Aligned_cols=234  Identities=12%  Similarity=0.136  Sum_probs=143.4

Q ss_pred             EEEEecCCCCEEEEEeC-------CCcEEEEECCCceeeeeeeCC----ccceEEEeeeeecCCCEEEEEEeCCCeEEEE
Q 004214          244 DLKFLGEEEQYLAVATN-------IEQVQVYDLSSMSCSYVLAGH----SEIVLCLDTCALSSGKILIVTGSKDNSVRLW  312 (768)
Q Consensus       244 ~~~~~~~~~~~l~~~~~-------~~~i~i~d~~~~~~~~~~~~~----~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iw  312 (768)
                      ..+|.+ +++++++...       ++.|..||..++.........    ......+.  +.++++. ++++...+.|..+
T Consensus        22 Gpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~--~~~dg~~-l~vad~~~~i~~~   97 (314)
T d1pjxa_          22 GPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQ--CDRDANQ-LFVADMRLGLLVV   97 (314)
T ss_dssp             EEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEE--ECSSSSE-EEEEETTTEEEEE
T ss_pred             EeEEeC-CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEE--EeCCCCE-EEEEECCCeEEEE
Confidence            345543 4554444322       367888888877654433221    12234554  6666666 5666666778888


Q ss_pred             eCCCceEEEeeecccC----cEEEEEEecCCCcEEEEEeC---------------CCeEEEEeCCCCCCCCcccccccee
Q 004214          313 DSESRCCVGVGTGHMG----AVGAVAFSKKLQNFLVSGSS---------------DHTIKVWSFDGLSDDAEQPMNLKAK  373 (768)
Q Consensus       313 d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~  373 (768)
                      +...+..........+    ....+++.++|. +.++-..               .|.|..++...           .. 
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-----------~~-  164 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-----------QM-  164 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-----------CE-
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeecC-----------ce-
Confidence            8876644332222111    246788999876 4444321               12333333221           01 


Q ss_pred             eEeeccCCCeEEEEEccCCC-----EEEEEeCCCcEEEEeCCCCceEE------EEec-cCCCeEEEEEccCCCEEEEee
Q 004214          374 AVVAAHGKDINSLAVAPNDS-----LVCTGSQDRTACVWRLPDLVSVV------TFRG-HKRGIWSVEFSPVDQVVITAS  441 (768)
Q Consensus       374 ~~~~~~~~~i~~~~~s~~~~-----~l~~~~~dg~i~i~d~~~~~~~~------~~~~-~~~~v~~v~~s~~~~~l~t~~  441 (768)
                      ......-...+.++|+|++.     ++++-+..+.|..|++.....+.      .+.+ +......+++.++|++.++..
T Consensus       165 ~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~  244 (314)
T d1pjxa_         165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW  244 (314)
T ss_dssp             EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred             eEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEc
Confidence            11122223457899999764     45555677889999875432222      1111 122356799999999988888


Q ss_pred             CCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEE-EEEeCCCcEEEEECC
Q 004214          442 GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQI-VSCGADGLVKLWTVR  494 (768)
Q Consensus       442 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~  494 (768)
                      ..+.|.+||.+.+..+..+..+....++++|.|+++.| ++.+.+|.|..+++.
T Consensus       245 ~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         245 GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            88999999998888888887777788999999999755 555667888877764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.74  E-value=3.3e-06  Score=81.93  Aligned_cols=144  Identities=10%  Similarity=0.019  Sum_probs=90.1

Q ss_pred             eEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeec----------ccCcEEEEEEecCCCcEEEEEeCCCeEEE
Q 004214          285 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG----------HMGAVGAVAFSKKLQNFLVSGSSDHTIKV  354 (768)
Q Consensus       285 v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~l~s~~~dg~i~i  354 (768)
                      ...+.  +.+++ .++++.+.++.+..++...+........          .......+.+..  ..++++.+..+.|..
T Consensus       115 ~n~i~--~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~  189 (302)
T d2p4oa1         115 LNGIT--PLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLR  189 (302)
T ss_dssp             EEEEE--ESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTTTEEEE
T ss_pred             cceeE--EccCC-CEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--CceeeecCCCCeEEe
Confidence            44443  44444 4477777788888888887654332221          112345555543  457788888899988


Q ss_pred             EeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEE--EeccCCCeEEEEE--
Q 004214          355 WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT--FRGHKRGIWSVEF--  430 (768)
Q Consensus       355 wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~v~~v~~--  430 (768)
                      +++.......       ... ..........++++++|+++++...++.|..++... +....  ....-...++++|  
T Consensus       190 ~~~~~~~~~~-------~~~-~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~~~~~~~~~~~~~~pt~vafg~  260 (302)
T d2p4oa1         190 IPVDSTDKPG-------EPE-IFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQAEQGVIGSTAVAFGQ  260 (302)
T ss_dssp             EEBCTTSCBC-------CCE-EEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEECGGGTCTTEEEEEECC
T ss_pred             cccccccccc-------ccc-cccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC-CEEEEEecCCCCCCceEEEEcC
Confidence            8876542211       111 112334467899999999888888899999998654 33222  2233456889999  


Q ss_pred             -ccCCCEEEEeeC
Q 004214          431 -SPVDQVVITASG  442 (768)
Q Consensus       431 -s~~~~~l~t~~~  442 (768)
                       ++|++.|+.++.
T Consensus       261 ~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         261 TEGDCTAIYVVTN  273 (302)
T ss_dssp             STTTTTEEEEEEC
T ss_pred             CCCCCCEEEEECC
Confidence             678887776654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.74  E-value=1.6e-05  Score=77.41  Aligned_cols=227  Identities=11%  Similarity=0.015  Sum_probs=144.0

Q ss_pred             EEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeC----CCeEEEEeCCCCC
Q 004214          286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS----DHTIKVWSFDGLS  361 (768)
Q Consensus       286 ~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~  361 (768)
                      ..+.  +.++++ +.++-...+.|..|+..++...............+++.++|. ++++...    .+.+...+.....
T Consensus        43 EG~~--~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~-l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          43 EGLN--FDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             EEEE--ECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCS
T ss_pred             EeCE--ECCCCC-EEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCC-EEEEecCCCccceeEEEEcCCCce
Confidence            3454  555655 567777889999999988776666666666788999999976 5555433    2233444433221


Q ss_pred             CCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC------CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCC
Q 004214          362 DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD------RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ  435 (768)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~  435 (768)
                      .        .............+.+++.|+|++.++....      +.+..++... ..+..+...-...+.++|+|+++
T Consensus       119 ~--------~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~~pnGia~s~dg~  189 (319)
T d2dg1a1         119 L--------QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNISVANGIALSTDEK  189 (319)
T ss_dssp             C--------EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEESSEEEEEECTTSS
T ss_pred             e--------eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeeccceeeeeeeccccc
Confidence            0        0000001112357789999999877664321      2355555433 33333333334567899999998


Q ss_pred             EE-EEeeCCCcEEEEeCCCC-ceeEEe-------ecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEecc--
Q 004214          436 VV-ITASGDKTIKIWSISDG-SCLKTF-------EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK--  504 (768)
Q Consensus       436 ~l-~t~~~d~~i~iwd~~~~-~~~~~~-------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--  504 (768)
                      .| ++-+..+.|..|++... ......       .........+++.++|++.++....|.|.+||. .|+.+..+..  
T Consensus       190 ~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~  268 (319)
T d2dg1a1         190 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG  268 (319)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT
T ss_pred             eEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCC
Confidence            66 44456789999997642 222111       112233567999999998888888999999995 7998888753  


Q ss_pred             ----CCCcEEEEEEcCCCCEEEEEeC
Q 004214          505 ----HEDKIWALAVGKKTEMFATGGS  526 (768)
Q Consensus       505 ----~~~~v~~l~~s~~~~~l~s~~~  526 (768)
                          +...+++++|.+++..+++...
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         269 RDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             GGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             cCCCcCceeeeEEEeCCCCEEEEEcC
Confidence                3345789999998877766543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1e-05  Score=83.27  Aligned_cols=157  Identities=9%  Similarity=0.047  Sum_probs=87.7

Q ss_pred             CeEEEEEccCCCEEEEEeC-C---CcEEEEeCCCCceEEEEeccCC-C----eEEEEEccCCCEEE---EeeCCC--cEE
Q 004214          382 DINSLAVAPNDSLVCTGSQ-D---RTACVWRLPDLVSVVTFRGHKR-G----IWSVEFSPVDQVVI---TASGDK--TIK  447 (768)
Q Consensus       382 ~i~~~~~s~~~~~l~~~~~-d---g~i~i~d~~~~~~~~~~~~~~~-~----v~~v~~s~~~~~l~---t~~~d~--~i~  447 (768)
                      .+..+.|+|++++++.... +   ..+.++|..+++....+..+.. .    -....|+|+|+.++   ..-.+|  .+.
T Consensus       256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly  335 (465)
T d1xfda1         256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY  335 (465)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred             eeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceE
Confidence            4678899999987666432 2   2588899999877665543222 1    23467899987432   222233  344


Q ss_pred             EEeCC------CCceeEEeecCCCcEEEE-EEEeCCCEEE-EEeCCC--cEEEEEC--CCCeE---EEEeccCCCcEEEE
Q 004214          448 IWSIS------DGSCLKTFEGHTSSVLRA-SFLTRGAQIV-SCGADG--LVKLWTV--RTGEC---IATYDKHEDKIWAL  512 (768)
Q Consensus       448 iwd~~------~~~~~~~~~~~~~~v~~~-~~s~~~~~l~-s~~~dg--~i~iwd~--~~~~~---~~~~~~~~~~v~~l  512 (768)
                      ..++.      .+..+..+....-.|..+ .|.++++.+. ++..++  .-.+|.+  ..+..   +..-........++
T Consensus       336 ~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~  415 (465)
T d1xfda1         336 HITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSA  415 (465)
T ss_dssp             EEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEE
T ss_pred             EEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEE
Confidence            33321      234444554445556665 5788877664 444332  3345543  33322   21111234456789


Q ss_pred             EEcCCCCEEEEEeCC---CcEEEEEcCCH
Q 004214          513 AVGKKTEMFATGGSD---ALVNLWHDSTA  538 (768)
Q Consensus       513 ~~s~~~~~l~s~~~d---g~v~vw~~~~~  538 (768)
                      .|||++++++.....   -.+.+++..++
T Consensus       416 ~~S~~~~y~v~~~s~~~~P~~~~~~~~~~  444 (465)
T d1xfda1         416 SFSHSMDFFLLKCEGPGVPMVTVHNTTDK  444 (465)
T ss_dssp             EECTTSSEEEEECCSSSSCCEEEEETTTC
T ss_pred             EECCCCCEEEEEeecCCCCeEEEEECCCC
Confidence            999999998854432   23566655443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.52  E-value=0.00017  Score=69.98  Aligned_cols=226  Identities=12%  Similarity=0.115  Sum_probs=142.4

Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeC----CCeEEEEeCCCc
Q 004214          242 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK----DNSVRLWDSESR  317 (768)
Q Consensus       242 i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~  317 (768)
                      +-.++|. ++++++++-...+.|..|+..+................++  +.+++.. +++...    .+.+...+....
T Consensus        42 lEG~~~D-~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla--~~~dG~l-~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          42 LEGLNFD-RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIK--IHKDGRL-FVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             EEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEE--ECTTSCE-EEEECTTSSSCCEEEEECTTSC
T ss_pred             cEeCEEC-CCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEE--ECCCCCE-EEEecCCCccceeEEEEcCCCc
Confidence            3467776 4566777777788999999888776665555555667776  6666654 544432    344666666655


Q ss_pred             eEEEeeec--ccCcEEEEEEecCCCcEEEEEeC------CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEc
Q 004214          318 CCVGVGTG--HMGAVGAVAFSKKLQNFLVSGSS------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA  389 (768)
Q Consensus       318 ~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  389 (768)
                      ........  .......+++.++|. +.++...      .+.+..++....           ........-...+.++|+
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~-----------~~~~~~~~~~~pnGia~s  185 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFR-----------TVTPIIQNISVANGIALS  185 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSC-----------CEEEEEEEESSEEEEEEC
T ss_pred             eeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccc-----------eeEEEeeccceeeeeeec
Confidence            44433322  233467889999976 4444322      123444433211           111112223446789999


Q ss_pred             cCCCEEEE-EeCCCcEEEEeCCCC-ceEEEE-------eccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEe
Q 004214          390 PNDSLVCT-GSQDRTACVWRLPDL-VSVVTF-------RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF  460 (768)
Q Consensus       390 ~~~~~l~~-~~~dg~i~i~d~~~~-~~~~~~-------~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~  460 (768)
                      |+++.|.+ -+..+.|..|++... ......       .........+++.++|++.++....+.|.+||- +|+.+..+
T Consensus       186 ~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i  264 (319)
T d2dg1a1         186 TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI  264 (319)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             cccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEE
Confidence            99986644 456789999987642 211111       111223567999999999888888999999995 79988887


Q ss_pred             e------cCCCcEEEEEEEeCCCEEEEEeC
Q 004214          461 E------GHTSSVLRASFLTRGAQIVSCGA  484 (768)
Q Consensus       461 ~------~~~~~v~~~~~s~~~~~l~s~~~  484 (768)
                      .      ++...+++++|.+++..+++...
T Consensus       265 ~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         265 LIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             ECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             eCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            6      34456789999998887766554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.51  E-value=0.00013  Score=69.85  Aligned_cols=220  Identities=11%  Similarity=-0.016  Sum_probs=145.1

Q ss_pred             eecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccc
Q 004214          292 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK  371 (768)
Q Consensus       292 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  371 (768)
                      +.+.++.+..+--..+.|..||..+++... +. ....+.++++.+++.  ++.++.+ .+..+|..++..        .
T Consensus        25 wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~-~~~~~~~i~~~~dg~--l~va~~~-gl~~~d~~tg~~--------~   91 (295)
T d2ghsa1          25 FDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSK--QLIASDD-GLFLRDTATGVL--------T   91 (295)
T ss_dssp             EETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTE--EEEEETT-EEEEEETTTCCE--------E
T ss_pred             EECCCCEEEEEECCCCEEEEEECCCCeEEE-EE-CCCCcEEEEEecCCC--EEEEEeC-ccEEeeccccee--------e
Confidence            445555555555567889999998886543 22 345678899988865  4445555 578888775421        1


Q ss_pred             eeeEee--ccCCCeEEEEEccCCCEEEEEeC----CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEE-EeeCCC
Q 004214          372 AKAVVA--AHGKDINSLAVAPNDSLVCTGSQ----DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI-TASGDK  444 (768)
Q Consensus       372 ~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-t~~~d~  444 (768)
                      ......  .....++.+.+.|+|++.++...    .+.-.+|.+.+++....... -.....++|+++++.++ +-+..+
T Consensus        92 ~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~  170 (295)
T d2ghsa1          92 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVN  170 (295)
T ss_dssp             EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTC
T ss_pred             EEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccc
Confidence            110000  11235788999999997776543    23456777767765544443 33567899999998654 455678


Q ss_pred             cEEEEeCCCC--c------eeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEc-
Q 004214          445 TIKIWSISDG--S------CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVG-  515 (768)
Q Consensus       445 ~i~iwd~~~~--~------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s-  515 (768)
                      .|..|++...  .      ....+.+..+....+++..+|++.++.-..|.|..||. +|+.+..+......+++++|- 
T Consensus       171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG  249 (295)
T d2ghsa1         171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIG  249 (295)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEES
T ss_pred             eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeC
Confidence            8998887431  1      11222344556788999999998887777889999994 789999998777789999996 


Q ss_pred             CCCCEEE-EEeC
Q 004214          516 KKTEMFA-TGGS  526 (768)
Q Consensus       516 ~~~~~l~-s~~~  526 (768)
                      |+.+.|. |...
T Consensus       250 ~d~~~LyvTta~  261 (295)
T d2ghsa1         250 PDASRLLVTSAR  261 (295)
T ss_dssp             TTSCEEEEEEBC
T ss_pred             CCCCEEEEEECC
Confidence            6666554 4443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.41  E-value=0.00032  Score=66.95  Aligned_cols=218  Identities=11%  Similarity=0.044  Sum_probs=137.9

Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeee
Q 004214          245 LKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT  324 (768)
Q Consensus       245 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  324 (768)
                      ..|.+.++.++.+--..+.|..||..+++... +. ....+.++.  ...++ . ++.++.+ .+.++|..+++......
T Consensus        23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~-~~~~~~~i~--~~~dg-~-l~va~~~-gl~~~d~~tg~~~~l~~   95 (295)
T d2ghsa1          23 PTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALA--KISDS-K-QLIASDD-GLFLRDTATGVLTLHAE   95 (295)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEE--EEETT-E-EEEEETT-EEEEEETTTCCEEEEEC
T ss_pred             CeEECCCCEEEEEECCCCEEEEEECCCCeEEE-EE-CCCCcEEEE--EecCC-C-EEEEEeC-ccEEeecccceeeEEee
Confidence            34555556666665567889999998886542 22 223456665  44554 4 3344554 58899999887654332


Q ss_pred             c----ccCcEEEEEEecCCCcEEEEEeC----CCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEE
Q 004214          325 G----HMGAVGAVAFSKKLQNFLVSGSS----DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC  396 (768)
Q Consensus       325 ~----~~~~v~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  396 (768)
                      .    ....+..+.+.|+|. +.++...    .+.-.+|.+..+          ..... ...-...+.++|+++++.+.
T Consensus        96 ~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~~g----------~~~~~-~~~~~~~Ng~~~s~d~~~l~  163 (295)
T d2ghsa1          96 LESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKG----------KVTKL-FADISIPNSICFSPDGTTGY  163 (295)
T ss_dssp             SSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETT----------EEEEE-EEEESSEEEEEECTTSCEEE
T ss_pred             eecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeecCC----------cEEEE-eeccCCcceeeecCCCceEE
Confidence            1    123578889999987 3443321    123345544322          11111 22233467899999998655


Q ss_pred             E-EeCCCcEEEEeCCCC------ce--EEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcE
Q 004214          397 T-GSQDRTACVWRLPDL------VS--VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV  467 (768)
Q Consensus       397 ~-~~~dg~i~i~d~~~~------~~--~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v  467 (768)
                      . -+..+.|..|++...      +.  ...+.+.......+++.++|++.++.-..+.|..||. +|+.+..+.-....+
T Consensus       164 ~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~  242 (295)
T d2ghsa1         164 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQT  242 (295)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBE
T ss_pred             EeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCce
Confidence            4 456778988887421      11  1222234456788999999998888777789999995 799999988777789


Q ss_pred             EEEEEE-eCCCEEEEE
Q 004214          468 LRASFL-TRGAQIVSC  482 (768)
Q Consensus       468 ~~~~~s-~~~~~l~s~  482 (768)
                      ++++|- ++.+.|+..
T Consensus       243 T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         243 TCPAFIGPDASRLLVT  258 (295)
T ss_dssp             EEEEEESTTSCEEEEE
T ss_pred             EEEEEeCCCCCEEEEE
Confidence            999996 576666543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=0.0014  Score=60.89  Aligned_cols=240  Identities=10%  Similarity=0.088  Sum_probs=149.1

Q ss_pred             CcEEEEECCCcee-----eeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEe
Q 004214          262 EQVQVYDLSSMSC-----SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS  336 (768)
Q Consensus       262 ~~i~i~d~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  336 (768)
                      +.|+-.++.....     ...+..+...+.+++  +...++.++.+-..++.|+..++..+............+..+++.
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld--~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD   87 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLA--FDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALD   87 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEE--EETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEE
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEE--EEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEe
Confidence            4666666543321     122334445566776  667777766666777889999988766555555445678899998


Q ss_pred             cCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCC-Cc--EEEEeCCCCc
Q 004214          337 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-RT--ACVWRLPDLV  413 (768)
Q Consensus       337 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~--i~i~d~~~~~  413 (768)
                      ..+.++.++-...+.|.+.+++...          ...........+..++++|...++...... +.  |...++....
T Consensus        88 ~~~~~lY~~d~~~~~I~~~~~dg~~----------~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~  157 (263)
T d1npea_          88 HLGRTIFWTDSQLDRIEVAKMDGTQ----------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN  157 (263)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCS----------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred             ccCCeEEEeccCCCEEEEEecCCce----------EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC
Confidence            7767666677778899999987432          111222233568899999977766655433 23  4444554433


Q ss_pred             eEEEEeccCCCeEEEEEccCCCEEEEe-eCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEe-CCCcEEEE
Q 004214          414 SVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG-ADGLVKLW  491 (768)
Q Consensus       414 ~~~~~~~~~~~v~~v~~s~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw  491 (768)
                      ........-.....+++.+.++.|+.+ ...+.|...|+........+.+... ...+++.  +.+|+... ..+.|...
T Consensus       158 ~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~--~~~lYwtd~~~~~I~~~  234 (263)
T d1npea_         158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY--GKNLYYTDWKTNSVIAM  234 (263)
T ss_dssp             CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred             ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCC-cEEEEEE--CCEEEEEECCCCEEEEE
Confidence            333333333466899999887766554 4668899999865554444444333 3466664  45665554 56789999


Q ss_pred             ECCCCeEEEEeccC-CCcEEEEEEcC
Q 004214          492 TVRTGECIATYDKH-EDKIWALAVGK  516 (768)
Q Consensus       492 d~~~~~~~~~~~~~-~~~v~~l~~s~  516 (768)
                      |..+++.+..+..+ ......+++.+
T Consensus       235 ~~~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         235 DLAISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             ETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             ECCCCccceEECCCCCCCcceEEEeC
Confidence            99999887766422 23334454433

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=0.002  Score=59.77  Aligned_cols=253  Identities=11%  Similarity=0.011  Sum_probs=151.3

Q ss_pred             EEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccce
Q 004214          206 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV  285 (768)
Q Consensus       206 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v  285 (768)
                      +..+..+.|.-..+..........  ...+......+..++|...++..+.+-...+.|+..++........+......+
T Consensus         4 Ll~s~~~~I~~~~ld~~~~~~~~~--~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p   81 (263)
T d1npea_           4 LLFAQTGKIERLPLERNTMKKTEA--KAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP   81 (263)
T ss_dssp             EEEEEEEEEEEEEESSSCBCGGGC--EEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred             EEEeCCCeEEEEECCCcccccccc--ccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccc
Confidence            444555566666654433221111  111112223467788876666666655667889999988766655555444567


Q ss_pred             EEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEE--eCCCCCCC
Q 004214          286 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW--SFDGLSDD  363 (768)
Q Consensus       286 ~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw--d~~~~~~~  363 (768)
                      .+++  ....++.+.++-...+.|.+.++..................+++.|....++.+-...+..+++  +++...  
T Consensus        82 ~~iA--vD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~--  157 (263)
T d1npea_          82 EGIA--LDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN--  157 (263)
T ss_dssp             EEEE--EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC--
T ss_pred             cEEE--EeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC--
Confidence            7776  5555666566667788999999887654444444456788999999877555554333333444  444321  


Q ss_pred             CccccccceeeEeeccCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC
Q 004214          364 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG  442 (768)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~  442 (768)
                              ........-....++++++.++.|..+ ...+.|...++........+.+... ..++++. .+.+..+-..
T Consensus       158 --------~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~-~~~lYwtd~~  227 (263)
T d1npea_         158 --------RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY-GKNLYYTDWK  227 (263)
T ss_dssp             --------CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE-TTEEEEEETT
T ss_pred             --------ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCC-cEEEEEE-CCEEEEEECC
Confidence                    111222233456899999877777555 4567899999876554444454333 4577776 3445555556


Q ss_pred             CCcEEEEeCCCCceeEEeecC-CCcEEEEEEEe
Q 004214          443 DKTIKIWSISDGSCLKTFEGH-TSSVLRASFLT  474 (768)
Q Consensus       443 d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~  474 (768)
                      .+.|...|..+++.+..+..+ ......+...+
T Consensus       228 ~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         228 TNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             TTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             CCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence            788999999888877766422 23344455443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.13  E-value=0.00094  Score=64.47  Aligned_cols=218  Identities=11%  Similarity=0.112  Sum_probs=130.2

Q ss_pred             CCCEEEEEEeCCCeEEEEeCCCceEEEeeec-ccCcEEEEEEecCC-CcEEEEEeCCC------------------eEEE
Q 004214          295 SGKILIVTGSKDNSVRLWDSESRCCVGVGTG-HMGAVGAVAFSKKL-QNFLVSGSSDH------------------TIKV  354 (768)
Q Consensus       295 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~l~s~~~dg------------------~i~i  354 (768)
                      +|+++++.-..++.|.+.|+.+.++...... ....+..+...++. ..+++.++.+.                  .+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            5667677777889999999999988665443 34456666665432 33666666532                  2445


Q ss_pred             EeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC---------------cEEEEeC----------
Q 004214          355 WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR---------------TACVWRL----------  409 (768)
Q Consensus       355 wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---------------~i~i~d~----------  409 (768)
                      +|.....          ..... .-......+.++|+|+++++.+.+.               .+.+++.          
T Consensus       178 ID~~tm~----------V~~QV-~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G  246 (459)
T d1fwxa2         178 VDADKWE----------VAWQV-LVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  246 (459)
T ss_dssp             EETTTTE----------EEEEE-EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             EecCCce----------EEEEe-eeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence            5554321          11111 1234566789999999999987542               2333432          


Q ss_pred             -------------CCC---ceEEEEeccCCCeEEEEEccCCCEEEEee-CCCcEEEEeCCCCc-----------eeEEee
Q 004214          410 -------------PDL---VSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGS-----------CLKTFE  461 (768)
Q Consensus       410 -------------~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~t~~-~d~~i~iwd~~~~~-----------~~~~~~  461 (768)
                                   .+.   ..+..+. -......+.++|||+++++++ .+.++.|+|++.-.           ++..-.
T Consensus       247 k~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~  325 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP  325 (459)
T ss_dssp             CSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC
T ss_pred             CcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeec
Confidence                         210   1111122 123356789999999888766 48899999986321           111111


Q ss_pred             cCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCC----------eEEEEeccCCCcEEEE------EEcCCCCEEEEEe
Q 004214          462 GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG----------ECIATYDKHEDKIWAL------AVGKKTEMFATGG  525 (768)
Q Consensus       462 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~l------~~s~~~~~l~s~~  525 (768)
                      ...-.....+|...|+-..|---|..|.-|++...          ..+..+..|-.+ -.+      ...|+|++|++..
T Consensus       326 elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~-gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         326 ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP-GHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE-EEEEETTTTSTTCCSSEEEEEE
T ss_pred             ccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCC-CCCccCcCCcCCCCCCEEEEec
Confidence            12334556788888865555567999999998532          455566544332 112      2367899988875

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=0.0035  Score=58.24  Aligned_cols=235  Identities=11%  Similarity=0.051  Sum_probs=143.3

Q ss_pred             EEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCce----EEEeeecccCcE
Q 004214          255 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC----CVGVGTGHMGAV  330 (768)
Q Consensus       255 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v  330 (768)
                      |+.+.. ..|+-+++.+......+. ....+..++  +....+.+..+-...+.|...++....    ...........+
T Consensus         4 Ll~s~~-~~I~~~~l~~~~~~~~~~-~~~~~~~id--~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p   79 (266)
T d1ijqa1           4 LFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP   79 (266)
T ss_dssp             EEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEE--EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             EEEECC-CeEEEEECCCCcceeeeC-CCCceEEEE--EEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCc
Confidence            344443 468888988766554444 344556776  667777756665667777777665321    122223334556


Q ss_pred             EEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC--CCcEEEEe
Q 004214          331 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ--DRTACVWR  408 (768)
Q Consensus       331 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d  408 (768)
                      ..+++.+.+.++.++-...+.|.+.++....          ..............++++|...++.....  .+.|...+
T Consensus        80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~----------~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~  149 (266)
T d1ijqa1          80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  149 (266)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSS----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             ceEEEeeccceEEEEecCCCEEEeEecCCce----------EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEec
Confidence            7889988777777777788899999987431          22233344566889999996655555443  34566666


Q ss_pred             CCCCceEEEEeccCCCeEEEEEccCCCEEEEe-eCCCcEEEEeCCCCceeEEeecC--CCcEEEEEEEeCCCEEEEEe-C
Q 004214          409 LPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGH--TSSVLRASFLTRGAQIVSCG-A  484 (768)
Q Consensus       409 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~-~  484 (768)
                      +............-.....+++.+.++.|+.+ ...+.|...++............  ......+++.  +.+|..+. .
T Consensus       150 ~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~  227 (266)
T d1ijqa1         150 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDII  227 (266)
T ss_dssp             TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETT
T ss_pred             cCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECC
Confidence            65443333333334567899999877766555 55688999998654443333322  2345556655  44555554 5


Q ss_pred             CCcEEEEECCCCeEEEEeccC
Q 004214          485 DGLVKLWTVRTGECIATYDKH  505 (768)
Q Consensus       485 dg~i~iwd~~~~~~~~~~~~~  505 (768)
                      ++.|...+..+++....+...
T Consensus       228 ~~~I~~~~~~~g~~~~~~~~~  248 (266)
T d1ijqa1         228 NEAIFSANRLTGSDVNLLAEN  248 (266)
T ss_dssp             TTEEEEEETTTCCCCEEEECS
T ss_pred             CCeEEEEECCCCcceEEEEcC
Confidence            678888887777665555433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.08  E-value=0.0001  Score=69.97  Aligned_cols=233  Identities=7%  Similarity=-0.011  Sum_probs=122.2

Q ss_pred             eecC--CCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCC-----eEEEEeCCCCCCCC
Q 004214          292 ALSS--GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-----TIKVWSFDGLSDDA  364 (768)
Q Consensus       292 ~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~  364 (768)
                      .+|+  |+.++++  .+|.|.+.|+.+++.. .+..+.+.+...+|+|||+.+.++...++     .|.+++...+....
T Consensus         6 ~sPdi~G~~v~f~--~~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           6 LNPDIHGDRIIFV--CCDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             EEEEEETTEEEEE--ETTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             cCCCCCCCEEEEE--eCCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            3455  7764444  3567888899988765 45566778899999999986555554332     35555655432110


Q ss_pred             ccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCC------cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEE
Q 004214          365 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR------TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI  438 (768)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  438 (768)
                      ..    .................|+|+|+.|+......      .+...+...+....   .+........+.+.+..++
T Consensus        83 lt----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  155 (281)
T d1k32a2          83 IT----YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP---LNLGPATHILFADGRRVIG  155 (281)
T ss_dssp             CC----CCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE---CCSCSCSEEEEETTEEEEE
T ss_pred             ee----ecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEE---ecCCccceeeecCCCeEEE
Confidence            00    00001112223456789999999988764322      24445544443322   1223333444444444444


Q ss_pred             EeeCCC-----------cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCC--cEEEEECCCCeEEEEeccC
Q 004214          439 TASGDK-----------TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG--LVKLWTVRTGECIATYDKH  505 (768)
Q Consensus       439 t~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~  505 (768)
                      ....+.           ....+....... .....+........++++. .+.....++  .|.++|+.+++........
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~  233 (281)
T d1k32a2         156 RNTFELPHWKGYRGGTRGKIWIEVNSGAF-KKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRKHTSFT  233 (281)
T ss_dssp             ESCSCCTTSTTCCSTTCCEEEEEEETTEE-EEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEECCCCC
T ss_pred             eeccccceeeeeccCCcceeeeeccccce-eeccCCccccceeeeeccc-cceecccccccceEEEeCCCCceEEeecCC
Confidence            433221           111222212222 2222233344445555542 233333333  5777888776654332222


Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCCHH
Q 004214          506 EDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA  539 (768)
Q Consensus       506 ~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~~~  539 (768)
                      ...+  ..|+|||+.|+-. .+|.|.++++.+++
T Consensus       234 ~~~~--~~~SpDG~~I~f~-~~~~l~~~d~~~g~  264 (281)
T d1k32a2         234 DYYP--RHLNTDGRRILFS-KGGSIYIFNPDTEK  264 (281)
T ss_dssp             SSCE--EEEEESSSCEEEE-ETTEEEEECTTTCC
T ss_pred             Cccc--ccCcCCCCEEEEE-eCCEEEEEECCCCC
Confidence            2233  4689999988764 46789999887654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.08  E-value=0.00049  Score=65.05  Aligned_cols=226  Identities=8%  Similarity=0.014  Sum_probs=119.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCC-----eEEEEeCCCceEEEeeec-
Q 004214          252 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN-----SVRLWDSESRCCVGVGTG-  325 (768)
Q Consensus       252 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~-  325 (768)
                      ++.++.... +.|.++|+.+++.. .+..+...+....  ++|+++.+.++...++     .|.+++..++........ 
T Consensus        12 G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~--~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~   87 (281)
T d1k32a2          12 GDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNAR--FFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFS   87 (281)
T ss_dssp             TTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEE--ECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCC
T ss_pred             CCEEEEEeC-CcEEEEECCCCCEE-EEecCCCcccCEE--ECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecC
Confidence            556665544 68999999988765 4555556666665  8888988555554332     477888888876654221 


Q ss_pred             -----ccCcEEEEEEecCCCcEEEEEeCC-----CeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEE
Q 004214          326 -----HMGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV  395 (768)
Q Consensus       326 -----~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  395 (768)
                           .........|+|+++.++++...+     ..+...+....             .....+........+.+.+..+
T Consensus        88 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~  154 (281)
T d1k32a2          88 GKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI-------------NFVPLNLGPATHILFADGRRVI  154 (281)
T ss_dssp             EEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT-------------EEEECCSCSCSEEEEETTEEEE
T ss_pred             CCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCc-------------eeEEecCCccceeeecCCCeEE
Confidence                 223456788999987443332211     11233333211             1111122223333333333333


Q ss_pred             EEEeCCC-----------cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeC--CCcEEEEeCCCCceeEEeec
Q 004214          396 CTGSQDR-----------TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG--DKTIKIWSISDGSCLKTFEG  462 (768)
Q Consensus       396 ~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~--d~~i~iwd~~~~~~~~~~~~  462 (768)
                      +....+.           ............ ..............++++. .+.....  ...|.++|+..+... .+..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~-~lt~  231 (281)
T d1k32a2         155 GRNTFELPHWKGYRGGTRGKIWIEVNSGAF-KKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLR-KHTS  231 (281)
T ss_dssp             EESCSCCTTSTTCCSTTCCEEEEEEETTEE-EEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCE-ECCC
T ss_pred             EeeccccceeeeeccCCcceeeeeccccce-eeccCCccccceeeeeccc-cceecccccccceEEEeCCCCceE-Eeec
Confidence            3322221           111111111222 2222233444555566543 2333332  345778888666543 3332


Q ss_pred             C-CCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEE
Q 004214          463 H-TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA  500 (768)
Q Consensus       463 ~-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  500 (768)
                      + ...+  ..|+|||+.|+.. .+|.|+++|+.+++...
T Consensus       232 ~~~~~~--~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         232 FTDYYP--RHLNTDGRRILFS-KGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             CCSSCE--EEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred             CCCccc--ccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence            2 2233  4689999988764 46889999998887543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.79  E-value=0.012  Score=61.19  Aligned_cols=80  Identities=18%  Similarity=0.084  Sum_probs=52.8

Q ss_pred             CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC-cEEEEEEEeCCC-EE
Q 004214          402 RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS-SVLRASFLTRGA-QI  479 (768)
Q Consensus       402 g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~-~l  479 (768)
                      |.|.-+|+.+++.+...... .+..+-..+-.+.++++|+.||.++-+|.++|+.+.++.-... .-.-+.|..+|+ |+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi  522 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeccCCCceeeEcCCC-CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence            56888899998888766532 2221111222467888899999999999999999988863211 112256667886 55


Q ss_pred             EEE
Q 004214          480 VSC  482 (768)
Q Consensus       480 ~s~  482 (768)
                      ++.
T Consensus       523 ~v~  525 (571)
T d2ad6a1         523 GSM  525 (571)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.75  E-value=0.0052  Score=64.08  Aligned_cols=131  Identities=11%  Similarity=0.103  Sum_probs=86.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEEeccCC------------------------------------CeEEEEEccCCCE
Q 004214          393 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKR------------------------------------GIWSVEFSPVDQV  436 (768)
Q Consensus       393 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------------------------------~v~~v~~s~~~~~  436 (768)
                      ..++.++.+|.+.++|..+++++.....-..                                    .-...+++|+..+
T Consensus       315 ~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~  394 (560)
T d1kv9a2         315 KVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGL  394 (560)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTE
T ss_pred             eeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCe
Confidence            3677788999999999999988765431100                                    0013566777666


Q ss_pred             EEEeeC------------------------------------CCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEE
Q 004214          437 VITASG------------------------------------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV  480 (768)
Q Consensus       437 l~t~~~------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  480 (768)
                      ++....                                    .|.+.-||+.+|+.+-++.. ..+...-.++-.|.+++
T Consensus       395 ~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF  473 (560)
T d1kv9a2         395 VYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVF  473 (560)
T ss_dssp             EEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEE
T ss_pred             eecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEE
Confidence            664332                                    25688899999988877652 22222233455677889


Q ss_pred             EEeCCCcEEEEECCCCeEEEEeccCCCcE-EEEEEcCCCC-EEEEE
Q 004214          481 SCGADGLVKLWTVRTGECIATYDKHEDKI-WALAVGKKTE-MFATG  524 (768)
Q Consensus       481 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~s~~~~-~l~s~  524 (768)
                      .|+.||.++.+|..+|+.+.+++...... .-+.+..+|+ ||++.
T Consensus       474 ~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~  519 (560)
T d1kv9a2         474 QGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIM  519 (560)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            99999999999999999999887432211 1134445775 55543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.68  E-value=0.0062  Score=58.70  Aligned_cols=226  Identities=10%  Similarity=0.056  Sum_probs=141.1

Q ss_pred             EEEEEeCCCeEEEEeCCCceEEEeeecc---------------------------------------cCcE--EEEEEec
Q 004214          299 LIVTGSKDNSVRLWDSESRCCVGVGTGH---------------------------------------MGAV--GAVAFSK  337 (768)
Q Consensus       299 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------------------------~~~v--~~~~~~~  337 (768)
                      .|.+|+..|.|+++-+.+++.+..+.-.                                       .+..  ..+.+..
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~Td   94 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE   94 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEET
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccC
Confidence            4778888999999988777665543200                                       0011  1344433


Q ss_pred             ---CCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeE-eeccCCCeEEEEEc--cCCCEEEEEeCCC---------
Q 004214          338 ---KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV-VAAHGKDINSLAVA--PNDSLVCTGSQDR---------  402 (768)
Q Consensus       338 ---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~s--~~~~~l~~~~~dg---------  402 (768)
                         ||+.+++.-..++.|.+-|++...          ...+ .......+..+...  |+-.+++.++.+.         
T Consensus        95 GtyDGrylFVNDkan~RVAvIdl~~fk----------t~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~  164 (459)
T d1fwxa2          95 GKYDGRFLFMNDKANTRVARVRCDVMK----------CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN  164 (459)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTE----------EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred             CccceeEEEEEcCCCceEEEEECccee----------eeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCcc
Confidence               666566666788999999988542          2221 12233445555554  4556777766632         


Q ss_pred             ---------cEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCC-----------------------------
Q 004214          403 ---------TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK-----------------------------  444 (768)
Q Consensus       403 ---------~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~-----------------------------  444 (768)
                               .+.++|..+.+....+.. ......++++|+|+++++.+.+.                             
T Consensus       165 l~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av  243 (459)
T d1fwxa2         165 MEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI  243 (459)
T ss_dssp             TTCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred             ccchhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhh
Confidence                     367789888887776653 34567899999999999877531                             


Q ss_pred             ---------cEEEEeCCC--C-ceeEEeecCCCcEEEEEEEeCCCEEEEEeC-CCcEEEEECCCCe------------EE
Q 004214          445 ---------TIKIWSISD--G-SCLKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGE------------CI  499 (768)
Q Consensus       445 ---------~i~iwd~~~--~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~------------~~  499 (768)
                               .+.+-|...  + ..++.+. -......+.++|||+++++++. +.++.|+|++.-.            ..
T Consensus       244 ~~Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~  322 (459)
T d1fwxa2         244 AAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV  322 (459)
T ss_dssp             HHTCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE
T ss_pred             hcCCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE
Confidence                     123334332  1 1122222 1223456889999999877765 8899999986321            11


Q ss_pred             EEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 004214          500 ATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST  537 (768)
Q Consensus       500 ~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~vw~~~~  537 (768)
                      .... ..-....-+|+..|....|---|..|.-|++..
T Consensus       323 ~e~e-lglgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         323 AEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             ECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             eecc-cCcCccccccCCCceEEEEeeccceEEEEecch
Confidence            1211 233345678998887777778999999999754

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.68  E-value=0.019  Score=52.20  Aligned_cols=249  Identities=13%  Similarity=0.140  Sum_probs=156.4

Q ss_pred             CcEEEEECCCceeeeeee-CCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCC
Q 004214          262 EQVQVYDLSSMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ  340 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  340 (768)
                      .+|.+.|+........-+ .....+      ..|.. ..++.-+ ..++.++|+++.+.+..+.-+. +|.-=.|-.+ .
T Consensus        45 ~~VvIidl~n~~~~~Rrpi~AdsAI------MhP~~-~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~-~  114 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPISADSAI------MNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-N  114 (327)
T ss_dssp             EEEEEEETTSTTSCEEEECCCSEEE------ECSSS-SEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSS-S
T ss_pred             ceEEEEECCCCCcceecccchhhhh------cCCCC-cEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCC-C
Confidence            578899998765432222 222221      33444 4355444 5689999999999998877655 4444445443 2


Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeecc----CCCeEEEEEccCCCEEEEEe---C----CCcEEEEeC
Q 004214          341 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH----GKDINSLAVAPNDSLVCTGS---Q----DRTACVWRL  409 (768)
Q Consensus       341 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~---~----dg~i~i~d~  409 (768)
                       .|+-.+ +..|.-|++++...         +...+..|    +..|..-..+++.++++..+   .    .|.+.+|..
T Consensus       115 -~L~lVT-~taVYHW~~~g~s~---------P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~  183 (327)
T d1utca2         115 -TVALVT-DNAVYHWSMEGESQ---------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV  183 (327)
T ss_dssp             -EEEEEC-SSEEEEEESSSSCC---------CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEET
T ss_pred             -EEEEEc-CCceEEEcccCCCC---------chhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEe
Confidence             344333 45799999964321         22223222    45777888888888877643   2    357889987


Q ss_pred             CCCceEEEEeccCCCeEEEEEccCC---CEEEEe---eCCCcEEEEeCCCCc---e---eEE--e-e---cCCCcEEEEE
Q 004214          410 PDLVSVVTFRGHKRGIWSVEFSPVD---QVVITA---SGDKTIKIWSISDGS---C---LKT--F-E---GHTSSVLRAS  471 (768)
Q Consensus       410 ~~~~~~~~~~~~~~~v~~v~~s~~~---~~l~t~---~~d~~i~iwd~~~~~---~---~~~--~-~---~~~~~v~~~~  471 (768)
                      +.. ....+.||......+.+.-+.   ++++.+   ...+.++|-++....   .   .+.  + -   ...+...++.
T Consensus       184 er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamq  262 (327)
T d1utca2         184 DRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ  262 (327)
T ss_dssp             TTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEE
T ss_pred             ccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEE
Confidence            654 445567775544444333211   122222   233678898886521   1   111  1 1   2245567788


Q ss_pred             EEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 004214          472 FLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL  532 (768)
Q Consensus       472 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~~dg~v~v  532 (768)
                      .++.-..+..-+.-|.|++||+.++.++..-+-....|..-+-+.+..-+++...+|.|.-
T Consensus       263 vs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         263 ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             eeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence            8988889999999999999999999999988777788886666666666777778887643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.64  E-value=0.023  Score=59.31  Aligned_cols=76  Identities=17%  Similarity=0.154  Sum_probs=52.5

Q ss_pred             CcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccC----CCcEEEEEEcCCCC
Q 004214          444 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH----EDKIWALAVGKKTE  519 (768)
Q Consensus       444 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~l~~s~~~~  519 (768)
                      |.|.-||+.+|+.+-+.. +..+...-.++..|..++.|+.||.++.+|..+|+.+.+++..    ..++   .+..+|+
T Consensus       453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~---tY~~dGk  528 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPM---TYTHKGT  528 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE---EEEETTE
T ss_pred             ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCe---EEEECCE
Confidence            568888888888876654 2233333334556788889999999999999999999988632    2333   3444775


Q ss_pred             -EEEE
Q 004214          520 -MFAT  523 (768)
Q Consensus       520 -~l~s  523 (768)
                       |++.
T Consensus       529 QYvav  533 (596)
T d1w6sa_         529 QYVAI  533 (596)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence             4543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.60  E-value=0.013  Score=61.09  Aligned_cols=130  Identities=11%  Similarity=0.065  Sum_probs=83.7

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceEEEEeccCC-----------------------------------CeEEEEEccCCCEE
Q 004214          393 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKR-----------------------------------GIWSVEFSPVDQVV  437 (768)
Q Consensus       393 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------------------------------~v~~v~~s~~~~~l  437 (768)
                      ..++.++.+|.+.++|..+++.+........                                   .-..++++|+..++
T Consensus       328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~  407 (573)
T d1kb0a2         328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (573)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             eeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence            4677788999999999999988765442100                                   01124677776666


Q ss_pred             EEeeCC-------------------------------------------CcEEEEeCCCCceeEEeecCCCcEEEEEEEe
Q 004214          438 ITASGD-------------------------------------------KTIKIWSISDGSCLKTFEGHTSSVLRASFLT  474 (768)
Q Consensus       438 ~t~~~d-------------------------------------------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  474 (768)
                      +....+                                           |.+.-||+.+|+.+-+..... +...-..+-
T Consensus       408 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~lst  486 (573)
T d1kb0a2         408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTT  486 (573)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEE
T ss_pred             EeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEeeecCCC-CCCCceEEE
Confidence            543221                                           357778888888877765322 222223445


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcEE-EEEEcCCCC-EEEE
Q 004214          475 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIW-ALAVGKKTE-MFAT  523 (768)
Q Consensus       475 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~l~~s~~~~-~l~s  523 (768)
                      .|..+++|+.||.++.+|..+|+.+..++...+... -+.+..+|+ |++.
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v  537 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV  537 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence            788999999999999999999999998864321110 133445776 4443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.59  E-value=0.0097  Score=61.93  Aligned_cols=81  Identities=12%  Similarity=0.147  Sum_probs=54.3

Q ss_pred             CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCc-EEEEEEEeCCC-EE
Q 004214          402 RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS-VLRASFLTRGA-QI  479 (768)
Q Consensus       402 g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~-~l  479 (768)
                      |.+.-||+.+++.+..... ..+..+-.++-.+.++++|+.||.++-+|..+|+.+.++.-.... -.-+.+..+|+ ||
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            4678889999988877653 222222223344778889999999999999999999888732211 11245667886 55


Q ss_pred             EEEe
Q 004214          480 VSCG  483 (768)
Q Consensus       480 ~s~~  483 (768)
                      ++..
T Consensus       517 ~v~a  520 (560)
T d1kv9a2         517 AIMA  520 (560)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.03  Score=51.65  Aligned_cols=238  Identities=11%  Similarity=-0.028  Sum_probs=139.1

Q ss_pred             EEEEecCeEEEEeeccCcccceeeEEEeeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCce----eeeeeeCC
Q 004214          206 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS----CSYVLAGH  281 (768)
Q Consensus       206 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~  281 (768)
                      +..+....|+.+++.....        ..+......+..+.|....+....+-...+.|.-.++....    ....+...
T Consensus         4 Ll~s~~~~I~~~~l~~~~~--------~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~   75 (266)
T d1ijqa1           4 LFFTNRHEVRKMTLDRSEY--------TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD   75 (266)
T ss_dssp             EEEECBSSEEEEETTSCCC--------EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS
T ss_pred             EEEECCCeEEEEECCCCcc--------eeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCC
Confidence            3444455566666654321        11112334567888876555555554556677766664321    11222333


Q ss_pred             ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEE-eCCCeEEEEeCCCC
Q 004214          282 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG-SSDHTIKVWSFDGL  360 (768)
Q Consensus       282 ~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~  360 (768)
                      ...+.+++  ....++.+.++-...+.|.+.++..................+++.|....++.+. +..+.|.-.+++..
T Consensus        76 ~~~p~glA--vD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs  153 (266)
T d1ijqa1          76 IQAPDGLA--VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  153 (266)
T ss_dssp             CSCCCEEE--EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCcceEE--EeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC
Confidence            34455565  5455666566667778999999988766666666667788999999766444443 23455666666532


Q ss_pred             CCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceEEEEecc--CCCeEEEEEccCCCEE
Q 004214          361 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLPDLVSVVTFRGH--KRGIWSVEFSPVDQVV  437 (768)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l  437 (768)
                      .          ........-...+++++++.++.|..+ ...+.|...++............  .....++++. .+.+.
T Consensus       154 ~----------~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly  222 (266)
T d1ijqa1         154 D----------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVF  222 (266)
T ss_dssp             C----------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEE
T ss_pred             c----------eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEE
Confidence            1          122222233567899999977766655 55678998898655443333332  2345677776 34455


Q ss_pred             EEeeCCCcEEEEeCCCCceeEEeecCC
Q 004214          438 ITASGDKTIKIWSISDGSCLKTFEGHT  464 (768)
Q Consensus       438 ~t~~~d~~i~iwd~~~~~~~~~~~~~~  464 (768)
                      .+-..++.|...+..++.....+....
T Consensus       223 ~td~~~~~I~~~~~~~g~~~~~~~~~~  249 (266)
T d1ijqa1         223 WTDIINEAIFSANRLTGSDVNLLAENL  249 (266)
T ss_dssp             EEETTTTEEEEEETTTCCCCEEEECSC
T ss_pred             EEECCCCeEEEEECCCCcceEEEEcCC
Confidence            555567888888888877666655433

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.53  E-value=0.041  Score=57.32  Aligned_cols=79  Identities=10%  Similarity=0.091  Sum_probs=53.4

Q ss_pred             CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCC-cEEEEEEEeCCC-EE
Q 004214          402 RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS-SVLRASFLTRGA-QI  479 (768)
Q Consensus       402 g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~-~l  479 (768)
                      |.|.-||+.+++...... +..+..+-.++..+.+++.|+.||.++-+|.++|+.+.++..... .-.-+.|..+|+ |+
T Consensus       453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv  531 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEE
Confidence            578889999998877654 223332222344578888999999999999999999988873221 111145666886 45


Q ss_pred             EE
Q 004214          480 VS  481 (768)
Q Consensus       480 ~s  481 (768)
                      +.
T Consensus       532 av  533 (596)
T d1w6sa_         532 AI  533 (596)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.51  E-value=0.08  Score=55.04  Aligned_cols=79  Identities=15%  Similarity=0.188  Sum_probs=55.7

Q ss_pred             CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCc-EEEEEEEeCCC-EE
Q 004214          402 RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS-VLRASFLTRGA-QI  479 (768)
Q Consensus       402 g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~-~l  479 (768)
                      |.+.-+|+.+++.......+ .++..-..+..+.++++|+.||.++-+|.++|+.+.++.-.... -.-+.|..+|+ |+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            67888999999888877643 23332223455778889999999999999999999888732211 11256678886 45


Q ss_pred             EE
Q 004214          480 VS  481 (768)
Q Consensus       480 ~s  481 (768)
                      +.
T Consensus       545 ~i  546 (582)
T d1flga_         545 GV  546 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.47  E-value=0.042  Score=56.97  Aligned_cols=83  Identities=12%  Similarity=0.068  Sum_probs=53.9

Q ss_pred             CcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCc-EEEEEEecCCC
Q 004214          262 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA-VGAVAFSKKLQ  340 (768)
Q Consensus       262 ~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~  340 (768)
                      |.+.-+|+.+++...............   ....++. +++|+.||.++.+|.++|+.+..+...... -.-+.+..+|+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~---l~Taggl-Vf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGk  519 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGT---LYTKGGL-VWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK  519 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBC---EEETTTE-EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcce---eEecCCE-EEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCE
Confidence            678889999998886654322111111   1223554 778999999999999999999887643221 12245556787


Q ss_pred             cEEEEEeC
Q 004214          341 NFLVSGSS  348 (768)
Q Consensus       341 ~~l~s~~~  348 (768)
                      .++++...
T Consensus       520 qYi~v~~g  527 (571)
T d2ad6a1         520 QYIGSMYG  527 (571)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence            77766544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.47  E-value=0.014  Score=60.92  Aligned_cols=80  Identities=11%  Similarity=0.131  Sum_probs=54.1

Q ss_pred             CcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcE-EEEEEEeCCC-EE
Q 004214          402 RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV-LRASFLTRGA-QI  479 (768)
Q Consensus       402 g~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~-~l  479 (768)
                      |.+.-||+.+++.+....... +...=..+-.+.++++|+.||.++.||.++|+.+.++....... .-+.|..+|+ |+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            568889999998888776432 22221233357889999999999999999999998887322111 1145667887 44


Q ss_pred             EEE
Q 004214          480 VSC  482 (768)
Q Consensus       480 ~s~  482 (768)
                      +..
T Consensus       536 ~v~  538 (573)
T d1kb0a2         536 SVA  538 (573)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.31  E-value=0.13  Score=53.27  Aligned_cols=79  Identities=11%  Similarity=0.230  Sum_probs=55.3

Q ss_pred             CcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEEeccCCCcE-EEEEEcCCCC-EE
Q 004214          444 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKI-WALAVGKKTE-MF  521 (768)
Q Consensus       444 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~s~~~~-~l  521 (768)
                      |.|.-+|+.+|+.+-+...+ .++..-.++..|..+++|+.||.++.+|..+|+.+.+++...... .-+.+..+|+ |+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            56888899999888777633 233333345678888999999999999999999999887432211 1145556775 55


Q ss_pred             EE
Q 004214          522 AT  523 (768)
Q Consensus       522 ~s  523 (768)
                      +.
T Consensus       545 ~i  546 (582)
T d1flga_         545 GV  546 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.26  E-value=0.06  Score=52.75  Aligned_cols=259  Identities=12%  Similarity=0.063  Sum_probs=127.1

Q ss_pred             EEEEECCCceeeee--e-eCCccceEEEeeeeecCCCEEEEEEeCC-CeEEEEeCCCceEEEeeeccc-CcEEEEEEecC
Q 004214          264 VQVYDLSSMSCSYV--L-AGHSEIVLCLDTCALSSGKILIVTGSKD-NSVRLWDSESRCCVGVGTGHM-GAVGAVAFSKK  338 (768)
Q Consensus       264 i~i~d~~~~~~~~~--~-~~~~~~v~~l~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~  338 (768)
                      +.+||..++.-...  . ..+........  +..++.. ++.|+.+ ..+.+||..+........... ..-.+++..++
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~--~~~~g~i-~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~d  130 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGIS--MDGNGQI-VVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD  130 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEE--ECTTSCE-EEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEE--EecCCcE-EEeecCCCcceeEecCccCcccccccccccccccceeeecC
Confidence            67899987754322  1 12222111222  4556654 6666544 689999998876654332211 11235566677


Q ss_pred             CCcEEEEEeCC------CeEEEEeCCCCCCCCccccccceeeEee----ccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 004214          339 LQNFLVSGSSD------HTIKVWSFDGLSDDAEQPMNLKAKAVVA----AHGKDINSLAVAPNDSLVCTGSQDRTACVWR  408 (768)
Q Consensus       339 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d  408 (768)
                      +. +++.|+.+      ..+.+||.....-...............    .....-..+...++|+.+..+...+.+.+++
T Consensus       131 G~-v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~  209 (387)
T d1k3ia3         131 GR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYT  209 (387)
T ss_dssp             SC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEEC
T ss_pred             Cc-eeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecC
Confidence            66 66666542      3588898875421000000000000000    0001112233445778888877777788888


Q ss_pred             CCCCceEEEEe--c----cCC--CeEEEEE-ccCCCEEEEeeCCC--------cEEEEeCCCCce---eEE-ee--cCCC
Q 004214          409 LPDLVSVVTFR--G----HKR--GIWSVEF-SPVDQVVITASGDK--------TIKIWSISDGSC---LKT-FE--GHTS  465 (768)
Q Consensus       409 ~~~~~~~~~~~--~----~~~--~v~~v~~-s~~~~~l~t~~~d~--------~i~iwd~~~~~~---~~~-~~--~~~~  465 (768)
                      ..+......-.  .    +..  .-.++.+ ..++++++.|+...        ...+.++.....   ... ..  .+..
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r  289 (387)
T d1k3ia3         210 SGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFAR  289 (387)
T ss_dssp             STTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCC
T ss_pred             cccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecccccccc
Confidence            77654332211  0    011  1122323 23566777765321        233333322111   111 11  0111


Q ss_pred             cEEEEEEEeCCCEEEEEeCCC-----------cEEEEECCCCeEEEEeccCCCc--EEEEEEcCCCCEEEEEeC
Q 004214          466 SVLRASFLTRGAQIVSCGADG-----------LVKLWTVRTGECIATYDKHEDK--IWALAVGKKTEMFATGGS  526 (768)
Q Consensus       466 ~v~~~~~s~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~--v~~l~~s~~~~~l~s~~~  526 (768)
                      .-.+....++|+.++.|+.++           .+.+||..+.+-...-.....+  -.+..+.+||+.++.||.
T Consensus       290 ~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         290 TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             ccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence            122455568999999888531           4788998877543221111111  123346799999999884

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.95  E-value=0.13  Score=46.56  Aligned_cols=264  Identities=12%  Similarity=0.146  Sum_probs=153.6

Q ss_pred             eCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEEEeeec
Q 004214          157 GERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV  236 (768)
Q Consensus       157 ~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~  236 (768)
                      ++...+.+.|+....-...+.             ....++..+|.. .+++.-....+.+|++.....        ....
T Consensus        42 ~~~~~VvIidl~n~~~~~Rrp-------------i~AdsAIMhP~~-~IiALrag~~LQiFnletK~k--------lks~   99 (327)
T d1utca2          42 GEQAQVVIIDMNDPSNPIRRP-------------ISADSAIMNPAS-KVIALKAGKTLQIFNIEMKSK--------MKAH   99 (327)
T ss_dssp             TTEEEEEEEETTSTTSCEEEE-------------CCCSEEEECSSS-SEEEEEETTEEEEEETTTTEE--------EEEE
T ss_pred             CCCceEEEEECCCCCcceecc-------------cchhhhhcCCCC-cEEEEecCCeEEEEehhHhhh--------hceE
Confidence            344578888887652111111             112233444554 555555678999999876531        1122


Q ss_pred             ccCCceeEEEEecCCCCEEEEEeCCCcEEEEECCCc-eeeeeeeCCcc--ceEEEeeeeecCCCEEEEEE--e----CCC
Q 004214          237 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-SCSYVLAGHSE--IVLCLDTCALSSGKILIVTG--S----KDN  307 (768)
Q Consensus       237 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~--~v~~l~~~~~~~~~~~l~~~--~----~dg  307 (768)
                      ..+.+|.--.|.  +.+.|+..+. ..|+-|+++.. .+.+.+..|..  ...-+.+...++.++++++|  .    -.|
T Consensus       100 ~~~e~VvfWkWi--s~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G  176 (327)
T d1utca2         100 TMTDDVTFWKWI--SLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG  176 (327)
T ss_dssp             ECSSCCCEEEES--SSSEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred             EcCCCcEEEEec--CCCEEEEEcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeE
Confidence            335577777786  4456766666 68999999543 34444544432  12222223667777766665  1    236


Q ss_pred             eEEEEeCCCceEEEeeecccCcEEEEEEecCC--CcEEEEEe---CCCeEEEEeCCCCCCCCccccccceeeEee---cc
Q 004214          308 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL--QNFLVSGS---SDHTIKVWSFDGLSDDAEQPMNLKAKAVVA---AH  379 (768)
Q Consensus       308 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~  379 (768)
                      .+.+|..+.+. -+.+.+|.+.-..+.+..+.  ..+++-+.   ..+.+.+-++...... ..+...+......   ..
T Consensus       177 ~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g-~~~f~kk~vdi~fppea~  254 (327)
T d1utca2         177 AMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG-NQPFPKKAVDVFFPPEAQ  254 (327)
T ss_dssp             EEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTT-CCCCCCEEEECCCCTTCT
T ss_pred             EEEEEEeccCc-CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccC-CCCCcceeEEEECCcccc
Confidence            78899887653 44566776655554443211  12333222   2367888888754221 1222222222221   22


Q ss_pred             CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEE
Q 004214          380 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIK  447 (768)
Q Consensus       380 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~  447 (768)
                      .+-..++.+++.-..+..-+.-|.+++||+.++.++..-+-...+|...+-+.+..=+++...+|.|.
T Consensus       255 ~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         255 NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             CCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            45567899999888999999999999999999999988776667776555554444444444566554

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.65  E-value=0.37  Score=47.58  Aligned_cols=239  Identities=10%  Similarity=0.023  Sum_probs=131.2

Q ss_pred             eeecCCCEEEEEEeCCC----eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeC---------------CCe
Q 004214          291 CALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS---------------DHT  351 (768)
Q Consensus       291 ~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---------------dg~  351 (768)
                      +.+++++.++++-+.+|    .++++|+.+++.+...-. ......++|.+++..++.+.-.               ...
T Consensus       131 ~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~  209 (430)
T d1qfma1         131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK  209 (430)
T ss_dssp             EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred             EecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccccCCcce
Confidence            36788887666655555    799999999987653221 1122567899998866555421               124


Q ss_pred             EEEEeCCCCCCCCccccccceeeEeecc--CCCeEEEEEccCCCEEEEEeC---CCcEEE--EeCCCCc--------eEE
Q 004214          352 IKVWSFDGLSDDAEQPMNLKAKAVVAAH--GKDINSLAVAPNDSLVCTGSQ---DRTACV--WRLPDLV--------SVV  416 (768)
Q Consensus       352 i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~---dg~i~i--~d~~~~~--------~~~  416 (768)
                      |..+.+....        ..........  ...+..+..++++++++....   ++...+  .++....        ...
T Consensus       210 v~~h~lgt~~--------~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  281 (430)
T d1qfma1         210 LYYHVLGTDQ--------SEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (430)
T ss_dssp             EEEEETTSCG--------GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             EEEEECCCCc--------cccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence            6666665431        1112222222  234566778899998775432   233344  4443211        112


Q ss_pred             EEeccCCCeEEEEEccCCCEEEEee---CCCcEEEEeCCCCce--eEEee-cCCCcEEEEEEEeCCCEEEEEe-CCC--c
Q 004214          417 TFRGHKRGIWSVEFSPVDQVVITAS---GDKTIKIWSISDGSC--LKTFE-GHTSSVLRASFLTRGAQIVSCG-ADG--L  487 (768)
Q Consensus       417 ~~~~~~~~v~~v~~s~~~~~l~t~~---~d~~i~iwd~~~~~~--~~~~~-~~~~~v~~~~~s~~~~~l~s~~-~dg--~  487 (768)
                      .+........- ..+.++.+++...   .++.|...++.+...  ...+- .+...+..-.++..+.+|+... .++  .
T Consensus       282 ~~~~~~~~~~~-~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~  360 (430)
T d1qfma1         282 LIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (430)
T ss_dssp             EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             eecccccceEE-EecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeE
Confidence            22222222222 2223333333332   246677777765432  23333 3455565556666666776554 555  5


Q ss_pred             EEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEE-EEe---CCCcEEEEEcCCHH
Q 004214          488 VKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFA-TGG---SDALVNLWHDSTAA  539 (768)
Q Consensus       488 i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~-s~~---~dg~v~vw~~~~~~  539 (768)
                      |++++..++..........+.|..+...++...+. +-+   .=..+.-+|+.+++
T Consensus       361 l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         361 LQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            88999998887666655556676666556555433 222   23567778887653

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.52  E-value=0.41  Score=46.36  Aligned_cols=53  Identities=21%  Similarity=0.346  Sum_probs=37.2

Q ss_pred             EEEEECCCCeeE--EEe-cCccceeEEEEEcCCCCEEEEEeCC-CeEEEEECCCCee
Q 004214           56 VRVWDLLAKKCV--ATL-DKHFSRVTSMAITSDGSTLISAGRD-KVVNLWDLRDYSC  108 (768)
Q Consensus        56 I~iWd~~~~~~~--~~l-~~h~~~V~~l~fs~d~~~L~s~~~d-g~i~vWd~~~~~~  108 (768)
                      +.+||..+++-.  ..+ ..|.......++.++|+.++.++.+ ..+.+||..+..-
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w  110 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW  110 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcc
Confidence            779999887532  222 2333334567889999999988765 5799999887654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.35  E-value=1.5  Score=43.05  Aligned_cols=270  Identities=11%  Similarity=0.014  Sum_probs=121.8

Q ss_pred             ccceeEEEEEcCCCCEEEEE-eCC----CeEEEEECCCCeeeeeeecceeEeeEEecCCCCCccccccccchhhhhcccC
Q 004214           73 HFSRVTSMAITSDGSTLISA-GRD----KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRR  147 (768)
Q Consensus        73 h~~~V~~l~fs~d~~~L~s~-~~d----g~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (768)
                      +.-.+..+++|||+++++-+ +..    ..|++.|+.+++.+...-.......++|.+++..+..............   
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~---  199 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDG---  199 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSS---
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccc---
Confidence            44445677899999998843 322    4799999999987653322222356778877763311100000000000   


Q ss_pred             CcceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEec---CeEEEE--eeccC
Q 004214          148 SLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD---QQLLLY--TTVEV  222 (768)
Q Consensus       148 ~~~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~~~--~~~~~  222 (768)
                          ..-.......+..+.+.+....      ...-+........+.....+.++..++.....   +...+|  +....
T Consensus       200 ----~~~~~~~~~~v~~h~lgt~~~~------d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~  269 (430)
T d1qfma1         200 ----TETSTNLHQKLYYHVLGTDQSE------DILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQE  269 (430)
T ss_dssp             ----SCCCCCCCCEEEEEETTSCGGG------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGS
T ss_pred             ----cccccCCcceEEEEECCCCccc------cccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCc
Confidence                0000011124555555544100      00000111111223444556676666544432   223333  33322


Q ss_pred             cccceee-EEEeeecccCCceeEEEEecCCCCEEEEEeC----CCcEEEEECCCcee---eeeeeCCccceEEEeeeeec
Q 004214          223 PEKKMEL-ILSKRLVGYNEEILDLKFLGEEEQYLAVATN----IEQVQVYDLSSMSC---SYVLAGHSEIVLCLDTCALS  294 (768)
Q Consensus       223 ~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~---~~~~~~~~~~v~~l~~~~~~  294 (768)
                      ....... ..............-+..   .+..+..-++    ++.|...++.....   ...+..+...+..-.  +..
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~--~~~  344 (430)
T d1qfma1         270 SNGITGILKWVKLIDNFEGEYDYVTN---EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV--ACV  344 (430)
T ss_dssp             SSSSCSSCCCEEEECSSSSCEEEEEE---ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEE--EEE
T ss_pred             ccccccccceeEeecccccceEEEec---CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeE--EEE
Confidence            2111000 001111111112221111   2223333222    35666666665432   223334444343222  333


Q ss_pred             CCCEEEEEEeCCC--eEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeC---CCeEEEEeCCCC
Q 004214          295 SGKILIVTGSKDN--SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS---DHTIKVWSFDGL  360 (768)
Q Consensus       295 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~  360 (768)
                      .++.+++....++  .|++++..++..........+.+..+...++...+.++.+.   -.++.-+|+.++
T Consensus       345 ~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~  415 (430)
T d1qfma1         345 RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE  415 (430)
T ss_dssp             TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred             ECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCC
Confidence            4455455555564  58889999887776665556666666655665544443322   256777777654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.89  E-value=0.34  Score=46.33  Aligned_cols=186  Identities=12%  Similarity=0.113  Sum_probs=103.7

Q ss_pred             CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCC---CCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcE
Q 004214          328 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD---DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTA  404 (768)
Q Consensus       328 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  404 (768)
                      ....-+++++... ++++|+.++ +.+........   ...........    ..-..|..++|+.+  .+++. .++.+
T Consensus        37 ~~~~LLAVsn~~G-Ll~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~----~~ip~v~~vafs~d--~l~v~-~~~~l  107 (381)
T d1xipa_          37 ASLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE----KEIPDVIFVCFHGD--QVLVS-TRNAL  107 (381)
T ss_dssp             SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE----EECTTEEEEEEETT--EEEEE-ESSEE
T ss_pred             cccceEEEeCCCC-EEEEECCCE-EEEEEHHHHHHHhhccCCCCcceec----cCCCCeEEEEeeCC--EEEEE-eCCCE
Confidence            3455677777644 677777765 55665332100   00000011111    11236888999754  45554 44668


Q ss_pred             EEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeec-----CCCcEEEEEEEeCCCEE
Q 004214          405 CVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG-----HTSSVLRASFLTRGAQI  479 (768)
Q Consensus       405 ~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l  479 (768)
                      ..++..+.........-..++..+.++|.  .++....++.+.++++.++.......+     -.+.+.+++|++.|..+
T Consensus       108 ~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~  185 (381)
T d1xipa_         108 YSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQS  185 (381)
T ss_dssp             EEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEE
T ss_pred             EEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEE
Confidence            88888776655555555677888888874  455566679999999988864332211     12456777777777777


Q ss_pred             EEEeCCCcEEEE-ECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe
Q 004214          480 VSCGADGLVKLW-TVRTGECIATYDKHEDKIWALAVGKKTEMFATGG  525 (768)
Q Consensus       480 ~s~~~dg~i~iw-d~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~s~~  525 (768)
                      +++..++ ..+- ++.....+.........|.++.|-.+..++++-+
T Consensus       186 v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~  231 (381)
T d1xipa_         186 FAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  231 (381)
T ss_dssp             EEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEEC
Confidence            6664322 1111 1111111100012345788999987777776543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.46  Score=43.63  Aligned_cols=104  Identities=13%  Similarity=0.119  Sum_probs=50.9

Q ss_pred             CCEEEEeeCC-----CcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCC-----cEEEEECCCCeEEEEec
Q 004214          434 DQVVITASGD-----KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG-----LVKLWTVRTGECIATYD  503 (768)
Q Consensus       434 ~~~l~t~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~  503 (768)
                      +.+++.|+.+     ..+..||..+.+....-..............++..++.|+.++     ....+|..+.+....-.
T Consensus       149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~  228 (288)
T d1zgka1         149 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP  228 (288)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred             ecceEecCcccccccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccC
Confidence            5555555543     3477888766543211111111111122223455666665543     46777877765443322


Q ss_pred             cCCCcEE-EEEEcCCCCEEEEEeCCCc-----EEEEEcCCH
Q 004214          504 KHEDKIW-ALAVGKKTEMFATGGSDAL-----VNLWHDSTA  538 (768)
Q Consensus       504 ~~~~~v~-~l~~s~~~~~l~s~~~dg~-----v~vw~~~~~  538 (768)
                      ....... +++. .+++.++.||.++.     +.+||+.+.
T Consensus       229 ~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         229 MKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             CSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             ccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCC
Confidence            1122111 2222 36788888876553     677877653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.76  E-value=1.7  Score=40.78  Aligned_cols=134  Identities=6%  Similarity=0.001  Sum_probs=77.7

Q ss_pred             ccCCC-EEEEEe---CCCcEEEEeCCCCce-E---EEEec-cCCCeEEEEEccCCCEEEEeeC---------------CC
Q 004214          389 APNDS-LVCTGS---QDRTACVWRLPDLVS-V---VTFRG-HKRGIWSVEFSPVDQVVITASG---------------DK  444 (768)
Q Consensus       389 s~~~~-~l~~~~---~dg~i~i~d~~~~~~-~---~~~~~-~~~~v~~v~~s~~~~~l~t~~~---------------d~  444 (768)
                      .++|. +|++..   ...+|.+|++..... +   .++.. .....+++++..++.+++|-..               -+
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~  186 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA  186 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence            44555 344433   345788888754322 2   12221 2235789999999998888321               12


Q ss_pred             cEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeC-CCcEEEEECCCCe---EEEEeccCCCcEEEEEEcC-CCC
Q 004214          445 TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGE---CIATYDKHEDKIWALAVGK-KTE  519 (768)
Q Consensus       445 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~---~~~~~~~~~~~v~~l~~s~-~~~  519 (768)
                      ...+|..+.++.. .....-...+.++++||+++|+.+.. .+.|++|++....   ....+. -.+..-.+.+.+ +|.
T Consensus       187 ~g~v~~~~~~~~~-~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~  264 (340)
T d1v04a_         187 WSFVTYYSPNDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGD  264 (340)
T ss_dssp             CEEEEEECSSCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCC
T ss_pred             ceeEEEEcCCceE-EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCE
Confidence            3344444344332 22223456788999999998766654 6789999886443   222222 445567788876 455


Q ss_pred             EEEEE
Q 004214          520 MFATG  524 (768)
Q Consensus       520 ~l~s~  524 (768)
                      +++++
T Consensus       265 lwva~  269 (340)
T d1v04a_         265 LWVGC  269 (340)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55554

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.63  E-value=1.8  Score=40.50  Aligned_cols=201  Identities=12%  Similarity=0.177  Sum_probs=114.0

Q ss_pred             CEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEec----CCCc-EEEEEe-CC---CeEEEEeCCCCCCCCccc
Q 004214          297 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK----KLQN-FLVSGS-SD---HTIKVWSFDGLSDDAEQP  367 (768)
Q Consensus       297 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~-~l~s~~-~d---g~i~iwd~~~~~~~~~~~  367 (768)
                      ..+++...+.+-|++||+. |+.+..+.  .+.+..+..-.    .+.. -++.++ .+   .+|.+|.+..........
T Consensus        40 ~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          40 NSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             ccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            3456666777789999996 55555543  35555555432    1111 233444 22   368888775321100000


Q ss_pred             cccceeeEeeccCCCeEEEEE--ccC-CC-EEEEEeCCCcEEEEeCC---CC----ceEEEEeccCCCeEEEEEccCCCE
Q 004214          368 MNLKAKAVVAAHGKDINSLAV--APN-DS-LVCTGSQDRTACVWRLP---DL----VSVVTFRGHKRGIWSVEFSPVDQV  436 (768)
Q Consensus       368 ~~~~~~~~~~~~~~~i~~~~~--s~~-~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~v~~v~~s~~~~~  436 (768)
                       .... .........+..+|+  +|. |. ++++...+|.+..|.+.   .+    +.++.+. -...+..|.+.+....
T Consensus       117 -~~~~-~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~  193 (353)
T d1h6la_         117 -TDPN-RPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGS  193 (353)
T ss_dssp             -SCSS-SCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTE
T ss_pred             -cccc-cccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCc
Confidence             0000 000111234566666  664 54 45666778988888763   22    3344444 3457889999999999


Q ss_pred             EEEeeCCCcEEEEeCCC-----CceeEEeec--CCCcEEEEEEEe--CCC-EE-EEEeCCCcEEEEECCC-CeEEEEec
Q 004214          437 VITASGDKTIKIWSISD-----GSCLKTFEG--HTSSVLRASFLT--RGA-QI-VSCGADGLVKLWTVRT-GECIATYD  503 (768)
Q Consensus       437 l~t~~~d~~i~iwd~~~-----~~~~~~~~~--~~~~v~~~~~s~--~~~-~l-~s~~~dg~i~iwd~~~-~~~~~~~~  503 (768)
                      |+.+-++.-|..++...     +..+....+  ....+-.+++-.  ++. || +|.-.+++..|||..+ .+.+..|.
T Consensus       194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            99998887776666542     222322222  356677777653  333 54 4555578999999876 46666653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.15  E-value=2.3  Score=39.76  Aligned_cols=204  Identities=11%  Similarity=0.132  Sum_probs=112.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeee---ecCCCEEEEEEe-C-C--CeEEEEeCCC-ceEEEe
Q 004214          251 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA---LSSGKILIVTGS-K-D--NSVRLWDSES-RCCVGV  322 (768)
Q Consensus       251 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~---~~~~~~~l~~~~-~-d--g~i~iwd~~~-~~~~~~  322 (768)
                      ...+++.....+-+++||+. |+.+..+..  +.+..++...   ......-++.++ . +  ..|.+|.+.. ...+..
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            34456666666779999986 665555542  2333333111   122222244444 2 2  3677776642 223333


Q ss_pred             eecc-------cCcEEEEEE--ecC-CCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCC
Q 004214          323 GTGH-------MGAVGAVAF--SKK-LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND  392 (768)
Q Consensus       323 ~~~~-------~~~v~~~~~--~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  392 (768)
                      +...       ...+..+|+  ++. +..++++...+|.+..|.+.......   ........ ......+..+.+++..
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~---v~~~lvr~-f~~~~q~EGCVvDde~  191 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGY---ISGKKVRA-FKMNSQTEGMAADDEY  191 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSS---EEEEEEEE-EECSSCEEEEEEETTT
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCc---eeeEeeec-cCCCCccceEEEeCCC
Confidence            3221       123566666  554 33467777889999998874322111   11122222 2345678899999998


Q ss_pred             CEEEEEeCCCcEEEEeCCC-----CceEEEEec--cCCCeEEEEEcc--C--CCEEEEeeCCCcEEEEeCCC-CceeEEe
Q 004214          393 SLVCTGSQDRTACVWRLPD-----LVSVVTFRG--HKRGIWSVEFSP--V--DQVVITASGDKTIKIWSISD-GSCLKTF  460 (768)
Q Consensus       393 ~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~--~~~~v~~v~~s~--~--~~~l~t~~~d~~i~iwd~~~-~~~~~~~  460 (768)
                      ..|..+-.+.-+..++...     ...+....+  ....+..++.-.  +  |-+|++.-.+++..|||... ...+..|
T Consensus       192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F  271 (353)
T d1h6la_         192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF  271 (353)
T ss_dssp             TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence            9999998887776666542     122222222  345667776543  2  33455555678899999865 3555555


Q ss_pred             e
Q 004214          461 E  461 (768)
Q Consensus       461 ~  461 (768)
                      .
T Consensus       272 ~  272 (353)
T d1h6la_         272 Q  272 (353)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.10  E-value=2.5  Score=39.99  Aligned_cols=138  Identities=12%  Similarity=0.047  Sum_probs=78.8

Q ss_pred             CcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 004214          328 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW  407 (768)
Q Consensus       328 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~  407 (768)
                      ..|..++|+.+   .++.. .++.+..++.....          ..........++..+.++|+  .++....+|.+.++
T Consensus        87 p~v~~vafs~d---~l~v~-~~~~l~~~~~~~l~----------~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~  150 (381)
T d1xipa_          87 PDVIFVCFHGD---QVLVS-TRNALYSLDLEELS----------EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSAL  150 (381)
T ss_dssp             TTEEEEEEETT---EEEEE-ESSEEEEEESSSTT----------CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEE
T ss_pred             CCeEEEEeeCC---EEEEE-eCCCEEEEEeeccc----------cccccccccccccceecCCc--eeEEEecCCCEEEE
Confidence            36888999865   34443 45567777776321          22222233456777777664  56677788999999


Q ss_pred             eCCCCceEEEEec-----cCCCeEEEEEccCCCEEEEeeCCCcEEE-EeCCCCceeEEeecCCCcEEEEEEEeCCCEEEE
Q 004214          408 RLPDLVSVVTFRG-----HKRGIWSVEFSPVDQVVITASGDKTIKI-WSISDGSCLKTFEGHTSSVLRASFLTRGAQIVS  481 (768)
Q Consensus       408 d~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~t~~~d~~i~i-wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  481 (768)
                      ++.+++......+     -...+.+++|++.|..++++..++ ..+ -++.....+.........|.++.|..+..++++
T Consensus       151 ~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vv  229 (381)
T d1xipa_         151 DLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  229 (381)
T ss_dssp             ETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEE
Confidence            9988754332211     235577777777777777664332 111 111111111101123456888999877766665


Q ss_pred             E
Q 004214          482 C  482 (768)
Q Consensus       482 ~  482 (768)
                      -
T Consensus       230 y  230 (381)
T d1xipa_         230 F  230 (381)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.27  E-value=2  Score=36.13  Aligned_cols=228  Identities=13%  Similarity=0.128  Sum_probs=115.8

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCC--CEEEEEE-----eCCCeEEEEeCCC-ceEEE
Q 004214          250 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSG--KILIVTG-----SKDNSVRLWDSES-RCCVG  321 (768)
Q Consensus       250 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~--~~~l~~~-----~~dg~i~iwd~~~-~~~~~  321 (768)
                      .+.+++++++..|.+.++-+..++.+..-.   .+|...   ..|..  +.+.++-     -.-..|++-++.. |+..+
T Consensus        24 ~~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~---~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~   97 (313)
T d2hu7a1          24 DGDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSV---LDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQR   97 (313)
T ss_dssp             TTTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEE---CEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEE
T ss_pred             cCCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCc---CCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeE
Confidence            466688889888999999888777654332   222222   11111  1111111     1112344445441 22222


Q ss_pred             eeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEE-ccCCCEEEEEeC
Q 004214          322 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV-APNDSLVCTGSQ  400 (768)
Q Consensus       322 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~  400 (768)
                      .-  ...++.-+...-++++..++|+......+|-++.+......... .......-..+.|..+.+ .++.+-++++..
T Consensus        98 i~--spk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vP-pFsFVtDI~~d~I~G~g~~~g~~~sfF~adl  174 (313)
T d2hu7a1          98 LE--AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNL  174 (313)
T ss_dssp             CT--TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-SCEEEEEEETTEEEEEEEEETTEEEEEEEET
T ss_pred             ec--CCceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCC-CcceEEeccCCeEEEEeeecCCcceEEEEec
Confidence            21  12234444444556778999998888889988765311100000 000011112334444433 233334555554


Q ss_pred             -CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEe----eCCCcEEEEeCCCCceeE------Eee-cCCCcEE
Q 004214          401 -DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA----SGDKTIKIWSISDGSCLK------TFE-GHTSSVL  468 (768)
Q Consensus       401 -dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~----~~d~~i~iwd~~~~~~~~------~~~-~~~~~v~  468 (768)
                       .|.+++++...+.           ++...+.+..+. +++    ++..-| -+|+++++.-+      .+. -....|+
T Consensus       175 ~SG~lri~tpkeGS-----------~~~ay~~~gnKV-~sdyEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~  241 (313)
T d2hu7a1         175 SSGGLRVFDSGEGS-----------FSSASISPGMKV-TAGLETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAIT  241 (313)
T ss_dssp             TTEEEEEECCSSEE-----------EEEEEECTTSCE-EEEEEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEE
T ss_pred             ccCCEEEecCCCCc-----------ccceeEccCcee-eeccCCCCceEEE-EEecccCceeeeecCcccceeecceEEE
Confidence             6777777655443           444444553333 222    122223 44776654321      111 2234566


Q ss_pred             EEEEEeCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 004214          469 RASFLTRGAQIVSCGADGLVKLWTVRTGECIAT  501 (768)
Q Consensus       469 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~  501 (768)
                      -+-+.|++++++.+-.||.-++|.  +|+.+.+
T Consensus       242 ~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~  272 (313)
T d2hu7a1         242 WLGYLPDGRLAVVARREGRSAVFI--DGERVEA  272 (313)
T ss_dssp             EEEECTTSCEEEEEEETTEEEEEE--TTEEECC
T ss_pred             eeeeCCCCcEEEEEecCCchheee--cceEecC
Confidence            677899999989999999888885  4554443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.63  E-value=4  Score=38.07  Aligned_cols=154  Identities=8%  Similarity=0.052  Sum_probs=88.8

Q ss_pred             eEEEEEccCCCEEEEEeC------------CCcEEEEeCCCCceEE-EE--eccC-----CCeEEEEE--ccCCC-EEEE
Q 004214          383 INSLAVAPNDSLVCTGSQ------------DRTACVWRLPDLVSVV-TF--RGHK-----RGIWSVEF--SPVDQ-VVIT  439 (768)
Q Consensus       383 i~~~~~s~~~~~l~~~~~------------dg~i~i~d~~~~~~~~-~~--~~~~-----~~v~~v~~--s~~~~-~l~t  439 (768)
                      .-.++..|+|..+++++.            .|.|.++|+.+..... .+  .+..     -....+.+  .++|+ +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            456788898877776542            4889999987654322 11  1110     12233333  44554 3443


Q ss_pred             e---eCCCcEEEEeCCCCce----eEEee-cCCCcEEEEEEEeCCCEEEEEeC---------------CCcEEEEECCCC
Q 004214          440 A---SGDKTIKIWSISDGSC----LKTFE-GHTSSVLRASFLTRGAQIVSCGA---------------DGLVKLWTVRTG  496 (768)
Q Consensus       440 ~---~~d~~i~iwd~~~~~~----~~~~~-~~~~~v~~~~~s~~~~~l~s~~~---------------dg~i~iwd~~~~  496 (768)
                      .   ....+|.+|++.....    +.++. ......+++.+..+|.+++|-..               -+...+|....+
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            3   2456788888754332    12222 12346789999999988888321               122344444444


Q ss_pred             eEEEEeccCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEEcCC
Q 004214          497 ECIATYDKHEDKIWALAVGKKTEMFATG-GSDALVNLWHDST  537 (768)
Q Consensus       497 ~~~~~~~~~~~~v~~l~~s~~~~~l~s~-~~dg~v~vw~~~~  537 (768)
                      +...... .-...+.++++||+++|+.+ +..+.|++|++..
T Consensus       197 ~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~  237 (340)
T d1v04a_         197 DVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  237 (340)
T ss_dssp             CEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ceEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence            4332222 23457889999999876554 5677788888764

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.97  E-value=2.9  Score=37.81  Aligned_cols=106  Identities=14%  Similarity=0.049  Sum_probs=51.2

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCceEEEEecc-CCCeEEEEEccCCCEEEEeeCC-----CcEEEEeCCCCceeEE
Q 004214          391 NDSLVCTGSQD-----RTACVWRLPDLVSVVTFRGH-KRGIWSVEFSPVDQVVITASGD-----KTIKIWSISDGSCLKT  459 (768)
Q Consensus       391 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~t~~~d-----~~i~iwd~~~~~~~~~  459 (768)
                      ++.+++.|+.+     ..+..||..+.+....-... .....+.... .+.+++.|+.+     .....+|..+.+....
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~  226 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFV  226 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             eecceEecCcccccccceEEEeeccccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeecc
Confidence            44555555543     35778887665433211111 1111122222 35566665543     3466777765543221


Q ss_pred             eecCCCcEEEEEEEeCCCEEEEEeCCC-----cEEEEECCCCe
Q 004214          460 FEGHTSSVLRASFLTRGAQIVSCGADG-----LVKLWTVRTGE  497 (768)
Q Consensus       460 ~~~~~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~  497 (768)
                      -..........+...+++.++.|+.++     .|.+||+.+++
T Consensus       227 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         227 APMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             cCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            111111111122234677778777654     37888988764

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=91.34  E-value=4.1  Score=36.55  Aligned_cols=222  Identities=13%  Similarity=0.065  Sum_probs=104.4

Q ss_pred             ccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCC
Q 004214          282 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS  361 (768)
Q Consensus       282 ~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  361 (768)
                      ...|..++    ..... .+.-. ||.|..|-....-.+.........+..++.-..   +.+.- .|+.+..|......
T Consensus        25 ~~~i~~va----~G~~h-~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~---~~~al-~dg~v~~wG~~~~g   94 (273)
T d1jtdb_          25 QSGVDAIA----GGYFH-GLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY---HSLAL-KDGEVIAWGGNEDG   94 (273)
T ss_dssp             SSSEEEEE----ECSSE-EEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSS---EEEEE-ETTEEEEEECCTTS
T ss_pred             CCCcEEEE----ccCCE-EEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCC---ceeee-eeeeeeccCCCcce
Confidence            34566664    22333 33334 899999976543333222333445555554322   33333 48999999865332


Q ss_pred             CCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEee
Q 004214          362 DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS  441 (768)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~  441 (768)
                      .....          ......+..++.....  .+ ...|+.+..|.................|..++-.  ...++ ..
T Consensus        95 q~~~~----------~~~~~~~~~i~~~~~~--~~-~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~~-~~  158 (273)
T d1jtdb_          95 QTTVP----------AEARSGVDAIAAGAWA--SY-ALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYTAL-AV  158 (273)
T ss_dssp             TTCCC----------GGGGSSCCEEEEETTE--EE-EEETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE-EE
T ss_pred             eeccc----------cccccceeEEeeeccc--cc-ccccccceecccCCCCceeeeccCCceEEEEecc--ceeee-ee
Confidence            11100          1111234444433222  22 2247888888644322111111122344444332  22222 33


Q ss_pred             CCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCCCcEEEEEEcCCCCE
Q 004214          442 GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT-GECIATYDKHEDKIWALAVGKKTEM  520 (768)
Q Consensus       442 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~~~  520 (768)
                      .++.+..|.................|..++..  ..+.+.-. ||.|+.|-... ++.-. .......|..++-.... .
T Consensus       159 ~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G--~~h~~~l~-dG~v~~WG~n~~Gql~~-~~~~~~~v~~I~~G~~~-~  233 (273)
T d1jtdb_         159 KNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGG--IFHSLALK-DGKVIAWGDNRYKQTTV-PTEALSGVSAIASGEWY-S  233 (273)
T ss_dssp             ETTEEEEEECCTTSTTSCCGGGSSSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTCC-CGGGGSSCCEEEECSSC-E
T ss_pred             cccceeEeecccCCcccccccccCCccceecc--ceeeEEEe-cCcEEEcCCCCCCccCC-CccCCCCcEEEEeCcce-E
Confidence            46888888765433222222244567666543  23333223 79999996533 22111 11123446666654332 3


Q ss_pred             EEEEeCCCcEEEEEcC
Q 004214          521 FATGGSDALVNLWHDS  536 (768)
Q Consensus       521 l~s~~~dg~v~vw~~~  536 (768)
                      ++.  .||.|..|-..
T Consensus       234 ~~l--~~g~v~~WG~~  247 (273)
T d1jtdb_         234 LAL--KNGKVIAWGSS  247 (273)
T ss_dssp             EEE--ETTEEEEESTT
T ss_pred             EEE--ECCEEEEECCC
Confidence            333  38999999543

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=91.31  E-value=4.8  Score=36.07  Aligned_cols=220  Identities=12%  Similarity=0.022  Sum_probs=103.6

Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeCCccceEEEeeeeecCCCEEEEEEeCCCeEEEEeCCCceEE
Q 004214          241 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV  320 (768)
Q Consensus       241 ~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  320 (768)
                      .|..++.   ...+.++-+ +|.|..|-....-++-.-......+..+.    ......++.  .||.+..|.....-..
T Consensus        27 ~i~~va~---G~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~----~G~~~~~al--~dg~v~~wG~~~~gq~   96 (273)
T d1jtdb_          27 GVDAIAG---GYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIA----AGNYHSLAL--KDGEVIAWGGNEDGQT   96 (273)
T ss_dssp             SEEEEEE---CSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEE----ECSSEEEEE--ETTEEEEEECCTTSTT
T ss_pred             CcEEEEc---cCCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEe----cCCCceeee--eeeeeeccCCCcceee
Confidence            4555554   333444445 79999998765443322222333444443    222232332  4899999976432211


Q ss_pred             EeeecccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccccccceeeEeeccCCCeEEEEEccCCCEEEEEeC
Q 004214          321 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ  400 (768)
Q Consensus       321 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  400 (768)
                      .........+..++....   ..+. -.|+.+..|.-.........          ......|..++-.  . ..+....
T Consensus        97 ~~~~~~~~~~~~i~~~~~---~~~~-~~dg~v~~~g~~~~~~~~~~----------~~~~~~v~~~~~~--~-~~~~~~~  159 (273)
T d1jtdb_          97 TVPAEARSGVDAIAAGAW---ASYA-LKDGKVIAWGDDSDGQTTVP----------AEAQSGVTALDGG--V-YTALAVK  159 (273)
T ss_dssp             CCCGGGGSSCCEEEEETT---EEEE-EETTEEEEEECCTTSTTSCC----------GGGGSSEEEEEEC--S-SEEEEEE
T ss_pred             ccccccccceeEEeeecc---cccc-cccccceecccCCCCceeee----------ccCCceEEEEecc--c-eeeeeec
Confidence            111122233444544433   2222 35899999975432211100          1111233333321  2 2233344


Q ss_pred             CCcEEEEeCCCCceEEEEeccCCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeEEeecCCCcEEEEEEEeCCCEEE
Q 004214          401 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV  480 (768)
Q Consensus       401 dg~i~i~d~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  480 (768)
                      ++.++.|-................|..|+...... ++ - .||.|+-|-....-.+..-......|..++-. +...++
T Consensus       160 ~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~~h~-~~-l-~dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G-~~~~~~  235 (273)
T d1jtdb_         160 NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHS-LA-L-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASG-EWYSLA  235 (273)
T ss_dssp             TTEEEEEECCTTSTTSCCGGGSSSEEEEEECSSEE-EE-E-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEC-SSCEEE
T ss_pred             ccceeEeecccCCcccccccccCCccceeccceee-EE-E-ecCcEEEcCCCCCCccCCCccCCCCcEEEEeC-cceEEE
Confidence            67888886543322222222445677776653322 22 2 37999999653321111111122345555533 223344


Q ss_pred             EEeCCCcEEEEEC
Q 004214          481 SCGADGLVKLWTV  493 (768)
Q Consensus       481 s~~~dg~i~iwd~  493 (768)
                      .  .||.|..|--
T Consensus       236 l--~~g~v~~WG~  246 (273)
T d1jtdb_         236 L--KNGKVIAWGS  246 (273)
T ss_dssp             E--ETTEEEEEST
T ss_pred             E--ECCEEEEECC
Confidence            3  3799999953

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.58  E-value=7.4  Score=37.84  Aligned_cols=105  Identities=11%  Similarity=0.125  Sum_probs=61.4

Q ss_pred             CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEEEe--------ccCCCeEEEEEccC---CCEEEEeeC------
Q 004214          380 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR--------GHKRGIWSVEFSPV---DQVVITASG------  442 (768)
Q Consensus       380 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~v~~v~~s~~---~~~l~t~~~------  442 (768)
                      -...++|+|.|+|+++++--..|.|++++..++.......        .-......|+|+|+   ..++.....      
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            3567899999999988876557999999887765433221        11346788999995   334443211      


Q ss_pred             -C----C--cEEEEeCCCCce--------eEEee-cCCCcEEEEEEEeCCCEEEEEeC
Q 004214          443 -D----K--TIKIWSISDGSC--------LKTFE-GHTSSVLRASFLTRGAQIVSCGA  484 (768)
Q Consensus       443 -d----~--~i~iwd~~~~~~--------~~~~~-~~~~~v~~~~~s~~~~~l~s~~~  484 (768)
                       +    .  .+..+.......        +..+. .......++.|.|||.+.++.+.
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence             1    1  133333322211        11111 12234567999999987776664

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.88  E-value=11  Score=34.42  Aligned_cols=250  Identities=13%  Similarity=0.121  Sum_probs=134.4

Q ss_pred             ceEEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccce--
Q 004214          150 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM--  227 (768)
Q Consensus       150 ~~~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~--  227 (768)
                      +..+++.+.+|.|+--.+..-...  ....    . .....+.+.........+.+++.+..|.++.......|....  
T Consensus         5 E~v~v~lS~~GyiKR~~~~~~~~~--~~~~----~-~~k~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s   77 (323)
T d1wp5a_           5 EDVIVTVTKDGYVKRTSLRSYAAS--NGQD----F-AMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKD   77 (323)
T ss_dssp             CEEEEEEETTCEEEEEEHHHHHHT--TTCC----C-CCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTS
T ss_pred             CCEEEEEeCCCeEEEeeHHHhhhc--CCCC----C-cccCCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccc
Confidence            347889999999986554331000  0000    0 011234556666777888999999999998877666553221  


Q ss_pred             -eeEEEeee-cccCCceeEEEEec--CCCCEEEEEeCCCcEEEEECCCcee--------eeeeeCCccceEEEeeeeecC
Q 004214          228 -ELILSKRL-VGYNEEILDLKFLG--EEEQYLAVATNIEQVQVYDLSSMSC--------SYVLAGHSEIVLCLDTCALSS  295 (768)
Q Consensus       228 -~~~~~~~~-~~~~~~i~~~~~~~--~~~~~l~~~~~~~~i~i~d~~~~~~--------~~~~~~~~~~v~~l~~~~~~~  295 (768)
                       -.+....+ ......+..+....  ..+.+++..+..|.+....+.....        ...+. ..+.+..+.  ....
T Consensus        78 ~G~pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~-~~D~l~~v~--~~~~  154 (323)
T d1wp5a_          78 LGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK-NDDQVVDVH--LTDG  154 (323)
T ss_dssp             CCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC-TTCCEEEEE--EECS
T ss_pred             ccccceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhcccc-cccccccee--ccCC
Confidence             11111111 12344555544433  3467899999999999998754321        11222 334444443  3344


Q ss_pred             CCEEEEEEeCCCeEEEEeCCCceE-------EEeeec-ccCcEEEEEEecCCCcEEEEEeCCCeEEEEeCCCCCCCCccc
Q 004214          296 GKILIVTGSKDNSVRLWDSESRCC-------VGVGTG-HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP  367 (768)
Q Consensus       296 ~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  367 (768)
                      ... ++.++..|.+..++...-..       +.-+.- ....+.+..+.++....++..+..|..+.-.+..........
T Consensus       155 ~~~-i~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~Rgg  233 (323)
T d1wp5a_         155 MNE-LFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAK  233 (323)
T ss_dssp             CSE-EEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTS
T ss_pred             CeE-EEEEEecceeeEeecccccccCcccccccccccccccccchhhhccccccceeeeeeeheeecccchhhccccccc
Confidence            444 78889999999998653211       111111 233444444333323468889999998887665432111100


Q ss_pred             cccceeeEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 004214          368 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP  410 (768)
Q Consensus       368 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  410 (768)
                      .-.............+.++....+...++..+..|.+.-.++.
T Consensus       234 kGv~~~k~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~~  276 (323)
T d1wp5a_         234 RGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG  276 (323)
T ss_dssp             CCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred             cccccccccccccceeeeeEecCCCCEEEEEeCCCEEEEEEhh
Confidence            0000011111122345556565566667677777777666543

>d1k8kg_ a.118.13.1 (G:) Arp2/3 complex 16 kDa subunit ARPC5 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Arp2/3 complex 16 kDa subunit ARPC5
family: Arp2/3 complex 16 kDa subunit ARPC5
domain: Arp2/3 complex 16 kDa subunit ARPC5
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.76  E-value=0.98  Score=35.34  Aligned_cols=88  Identities=18%  Similarity=0.167  Sum_probs=61.0

Q ss_pred             hHHHHhhcccchHHHHHHHhhcCCch--------hHHHHHHHHHhchhhHHHHHHHHhhcCHHHHHHHHHHHHHHhcCC-
Q 004214          556 QELENAVLDADYTKAIQVAFELRRPH--------KLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKP-  626 (768)
Q Consensus       556 ~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~l~~~~~~~-  626 (768)
                      ++++.++..++..+|+..++......        ..+.++..++... ...+|+.++..|+.++..-|++||-+-+..+ 
T Consensus        32 ~eVrslL~~G~~~~AL~~~L~~pP~~~~~~~~Kd~~~~~vl~VL~si-K~~dI~~~v~~L~~~~~D~LMKYiYkG~~~p~  110 (143)
T d1k8kg_          32 GEVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISF-KANDIEKAVQSLDKNGVDLLMKYIYKGFESPS  110 (143)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHHHS-CGGGHHHHHHTSCHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHhcCCHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcChHhHHHHHHHHHHhccCCC
Confidence            56788899999999999998653221        1122222222211 1237999999999999999999997777775 


Q ss_pred             -CchHHHHHHHHHHhccCC
Q 004214          627 -KLCHVAQFVLFQLFNIHP  644 (768)
Q Consensus       627 -~~~~~~~~~l~~~l~~~~  644 (768)
                       ..+.+++.|-..++...|
T Consensus       111 ~~s~~~LL~WHEKl~~~~G  129 (143)
T d1k8kg_         111 DNSSAVLLQWHEKALAAGG  129 (143)
T ss_dssp             TTHHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHhcC
Confidence             567777777776665543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=84.77  E-value=9.9  Score=31.81  Aligned_cols=231  Identities=15%  Similarity=0.169  Sum_probs=112.6

Q ss_pred             EEEEeeCCcEEEEEEcCCceeeeecCCceeecccccCcccceeEEEEccCCCceEEEEecCeEEEEeeccCcccceeeEE
Q 004214          152 HFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELIL  231 (768)
Q Consensus       152 ~~~~~~~~g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~  231 (768)
                      .++.+...|.+.++-+.++..................+.+-+..+.-...+...      ..++.-++....+ .     
T Consensus        28 ll~~~~seG~vni~~l~g~~~vkLtkePI~~~~~Pk~~ldfi~f~RDV~kGkE~------Hai~~~Nlk~~GE-E-----   95 (313)
T d2hu7a1          28 LLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQ------HALFKVNTSRPGE-E-----   95 (313)
T ss_dssp             EEEEEEETTEEEEEEESSSSCEECCSSCCSEECEECTTBSEEEEEEECSTTSCC------EEEEEEETTSTTC-E-----
T ss_pred             EEEEEeccceEEEEEEeCCEEEEEecccccCcCCCccCcceEEEEeehhcCcce------eeEEEEccCCCCe-e-----
Confidence            667777889999999988866554444332222221111111111111111111      1122222221110 0     


Q ss_pred             EeeecccC-CceeEEEEecCCCCEEEEEeCCCcEEEEECCCceeeee--eeC-------CccceEEEeeeeecCCCEEEE
Q 004214          232 SKRLVGYN-EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV--LAG-------HSEIVLCLDTCALSSGKILIV  301 (768)
Q Consensus       232 ~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~--~~~-------~~~~v~~l~~~~~~~~~~~l~  301 (768)
                       .++.... -.|.++++  ++.+...+|+......+|-++.+.....  +++       ..+.|..+.  +...+..-++
T Consensus        96 -~~i~spk~vRI~S~~y--ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g--~~~g~~~sfF  170 (313)
T d2hu7a1          96 -QRLEAVKPMRILSGVD--TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLG--FFGGGRVSLF  170 (313)
T ss_dssp             -EECTTSCSBEEEEEEE--CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEE--EEETTEEEEE
T ss_pred             -eEecCCceEEEEEeee--cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEe--eecCCcceEE
Confidence             0111111 23455555  5778888899888899998888765432  222       122333333  3333333344


Q ss_pred             EEeC-CCeEEEEeCCCceEEEeeecccCcEEEEEEecCCCcEEEEEeCC---CeEEEEeCCCCCCCCccccccceeeEee
Q 004214          302 TGSK-DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD---HTIKVWSFDGLSDDAEQPMNLKAKAVVA  377 (768)
Q Consensus       302 ~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~  377 (768)
                      ++.- .|.+++++...|           .++.....+..+  ++++-..   ....-+|++...-...   .........
T Consensus       171 ~adl~SG~lri~tpkeG-----------S~~~ay~~~gnK--V~sdyEt~gEsywit~D~~s~~yerv---e~P~kd~~s  234 (313)
T d2hu7a1         171 TSNLSSGGLRVFDSGEG-----------SFSSASISPGMK--VTAGLETAREARLVTVDPRDGSVEDL---ELPSKDFSS  234 (313)
T ss_dssp             EEETTTEEEEEECCSSE-----------EEEEEEECTTSC--EEEEEEESSCEEEEEECTTTCCEEEC---CCSSCHHHH
T ss_pred             EEecccCCEEEecCCCC-----------cccceeEccCce--eeeccCCCCceEEEEEecccCceeee---ecCccccee
Confidence            4444 666776665554           444444455432  2332211   1111235543311000   011111112


Q ss_pred             ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 004214          378 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT  417 (768)
Q Consensus       378 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~  417 (768)
                      -....|+.+-+.|++++++.+-.||.-.+|.  +++.+..
T Consensus       235 y~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~  272 (313)
T d2hu7a1         235 YRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERVEA  272 (313)
T ss_dssp             HCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEECC
T ss_pred             ecceEEEeeeeCCCCcEEEEEecCCchheee--cceEecC
Confidence            2334567778999999999999999999887  4555443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.15  E-value=6.4  Score=38.32  Aligned_cols=106  Identities=16%  Similarity=0.220  Sum_probs=62.6

Q ss_pred             CCCeEEEEEccCCCEEEEeeCCCcEEEEeCCCCceeE--Eee------cCCCcEEEEEEEeC---CCEEEEEeC------
Q 004214          422 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK--TFE------GHTSSVLRASFLTR---GAQIVSCGA------  484 (768)
Q Consensus       422 ~~~v~~v~~s~~~~~l~t~~~d~~i~iwd~~~~~~~~--~~~------~~~~~v~~~~~s~~---~~~l~s~~~------  484 (768)
                      -...++|+|.|+|+++++--..|.|++++..++....  .+.      .-......++|+|+   ..++.....      
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            3467899999999998887557999999987775432  221      12356789999985   334433211      


Q ss_pred             -C----Cc--EEEEECCCCe-------EE-EEec-cCCCcEEEEEEcCCCCEEEEEeCC
Q 004214          485 -D----GL--VKLWTVRTGE-------CI-ATYD-KHEDKIWALAVGKKTEMFATGGSD  527 (768)
Q Consensus       485 -d----g~--i~iwd~~~~~-------~~-~~~~-~~~~~v~~l~~s~~~~~l~s~~~d  527 (768)
                       +    +.  +..+......       .+ ..+. ........|.|.|||.+.++.|..
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~  164 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ  164 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCC
Confidence             1    11  2233322211       11 1111 111234679999999988877753