Citrus Sinensis ID: 004249

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-----
Protein Sequence
MEDEECLEYEALAERKRKAALQNHNDCTEGEAKKKKMAMESQDNDDERRRFEAIIFGFGSRKRSREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHCTF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHccccHHccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MEDEECLEYEALAERKRKAALQnhndctegeAKKKKMAMESQDNDDERRRFEAIIFGFgsrkrsreaskkypslkkrgrpegskkkvcPEIRRMLGDASLHYALGRYEEAISVLHEVIRLeeelpnsyHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEavkadpndfkLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYlkghpteadfGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEanagvhndgcLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDakdeeaislltppmslenkyvnsdkTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVcesshqeetfnhEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLgygkfpvekEELYFlgaqipcnttdpklwfdGVRFMVklhphrlttWNRYYKLVSRFEKIFSKHAKLLRNVRAkyrdfvppiiisghqfTMISHHQDAAREYLEAYkllpenplinlcvGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKdciipgfpdhmedwkpghsdlRREAAYNLHLIYKKSGAVDLARQVLRDHCTF
Flexible Loop (DISEMBL)
MEDEECLEYEALAERKrkaalqnhndctegeakkkkmamesqdndderrRFEAIifgfgsrkrsreaskkypslkkrgrpegskkkvcpeIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAislltppmslenkyvnsdkthaWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHCTF
Low Complexity Region (SEG)
MEDEECLEYEALAERKRKAALQNHNDCTEGeakkkkmameSQDNDDERRRFEAIIFGFGSRKRSREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHCTF
Disordered region (IsUnstruct)
***************************************************EAIIFGF*****************************CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLR*****
Disordered Region (DISOPRED)
*****CLEYEALAERKRKAALQN***************MESQDNDDERRRFEAIIFGFGS**************************VCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHCTF
Disordered Region (DISEMBL)
MEDEECLEYEALAERKRK****************************ERRRFEAIIFGFGS**************************VCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHCTF
Disordered Region (DISPRO)
*****CLEYEALAERKRKA*****************************RRFEAIIFGFGSRKRSR*******************KKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHCTF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDEECLEYEALAERKRKAALQNHNDCTEGEAKKKKMAMESQDNDDERRRFEAIIFGFGSRKRSREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHCTF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	765	2.2.26 [Sep-21-2011]
Q9Y5Q9	886	General transcription fac	yes	no	0.882	0.761	0.217	8e-43
O74458	1006	Transcription factor tau	yes	no	0.202	0.154	0.345	1e-14
P33339	1025	Transcription factor tau	yes	no	0.149	0.111	0.318	1e-11
Q58350	318	TPR repeat-containing pro	yes	no	0.172	0.415	0.251	4e-07
Q04737	248	TPR repeat-containing pro	N/A	no	0.176	0.544	0.261	5e-07
Q9M8Y0	977	Probable UDP-N-acetylgluc	no	no	0.196	0.153	0.26	2e-05
Q57711	338	TPR repeat-containing pro	no	no	0.177	0.402	0.238	5e-05
P19737	387	TPR repeat-containing pro	yes	no	0.231	0.457	0.192	0.0001
Q54M21	502	DnaJ homolog subfamily C	no	no	0.104	0.159	0.275	0.0008

>sp|Q9Y5Q9|TF3C3_HUMAN General transcription factor 3C polypeptide 3 OS=Homo sapiens GN=GTF3C3 PE=1 SV=1

 Score =  176 bits (445), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 171/785 (21%), Positives = 349/785 (44%), Gaps = 110/785 (14%)

Query: 64  SREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEE 123
           +RE  K    + K  RP   + K+   +R ++G+A++ +A G  EEAI +  E+IR    
Sbjct: 129 NRETKK----MMKEKRP---RSKLPRALRGLMGEANIRFARGEREEAILMCMEIIRQAPL 181

Query: 124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLS 183
               +  L ++++  G+  K++    +AA     D+  W  +    +EQ +   A+ C +
Sbjct: 182 AYEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCYT 241

Query: 184 EAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQ-LCPENIEAL----KMGAKLYQ 238
           +A+K +P + +  +  +SLY ++G+ + A D YR+++  L P + E      +  AK Y 
Sbjct: 242 KALKYEPTNVRYLWERSSLYEQMGDHKMAMDGYRRILNLLSPSDGERFMQLARDMAKSYY 301

Query: 239 KSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKE 298
           ++  + S+++I+++    H        +++ A + +    YD+ L+ I     +    K 
Sbjct: 302 EANDVTSAINIIDEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEIITDFSGIVLEKKT 361

Query: 299 ----------------------LLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHA 336
                                 + + + +K  +C + L   +    LLT +  +N  D  
Sbjct: 362 SEEGTSEENKAPENVTCTIPDGVPIDITVKLMVCLVHLNILEPLNPLLTTLVEQNPEDMG 421

Query: 337 ESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFY 396
           +   ++A+ F +   Y++AL     L  +   +N   + L+ AEC  AL   E++   + 
Sbjct: 422 DLYLDVAEAFLDVGEYNSALPLLSALVCSER-YNLAVVWLRHAECLKALGYMERAAESYG 480

Query: 397 KALQILEDNIDARLTLASLLLEDAKDEEAISLLTP---PMSLENKYVNSDKTHAWWLNIR 453
           K + +   ++DAR++L++L  +  + E+A+  L P   P +L      +   +A    ++
Sbjct: 481 KVVDLAPLHLDARISLSTLQQQLGQPEKALEALEPMYDPDTL------AQDANAAQQELK 534

Query: 454 IKIKLCRIYKAKGMIEGFVD-------------MLLPLVC-------------------- 480
           + +    +  ++G + G+VD             M    VC                    
Sbjct: 535 LLLHRSTLLFSQGKMYGYVDTLLTMLAMLLKVAMNRAQVCLISSSKSGERHLYLIKVSRD 594

Query: 481 --ESSHQEETFNHEEHRL---------------LIIDLCKTLASLHRYEDAIKIINLILK 523
               S+ +E+ N +   +               L++    +L  L R+++A  +++  L+
Sbjct: 595 KISDSNDQESANCDAKAIFAVLTSVLTKDDWWNLLLKAIYSLCDLSRFQEAELLVDSSLE 654

Query: 524 LGYGKFPVEKE---ELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSR 580
             Y  F  +++   EL + G        + +  ++ +R MV  + ++   WN + ++   
Sbjct: 655 --YYSFYDDRQKRKELEYFGLSAAILDKNFRKAYNYIRIMVMENVNKPQLWNIFNQVTMH 712

Query: 581 FEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLIN 640
            + +  +H +    +  K  +     +++GH   +    + A  +Y++A++  P+ PL +
Sbjct: 713 SQDV--RHHRFCLRLMLKNPENHALCVLNGHNAFVSGSFKHALGQYVQAFRTHPDEPLYS 770

Query: 641 LCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLA 700
            C+G   I++A    +  +H  + QG +FL   L L    QE+ YN+ R  H +GL+ LA
Sbjct: 771 FCIGLTFIHMASQKYVLRRHALIVQGFSFLNRYLSLRGPCQESFYNLGRGLHQLGLIHLA 830

Query: 701 ASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLR 760
             YY+K L +       P  P  +E  +    DLRR+ AYNL LIY+ SG   +A+ +L 
Sbjct: 831 IHYYQKALEL-------P--PLVVEGIELDQLDLRRDIAYNLSLIYQSSGNTGMAQTLLY 881

Query: 761 DHCTF 765
            +C+ 
Sbjct: 882 TYCSI 886

Involved in RNA polymerase III-mediated transcription. Integral, tightly associated component of the DNA-binding TFIIIC2 subcomplex that directly binds tRNA and virus-associated RNA promoters.
Homo sapiens (taxid: 9606)

>sp|O74458|SFC4_SCHPO Transcription factor tau subunit sfc4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sfc4 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 13/168 (7%)

Query: 606  IIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQ 665
            +++ GH          A   Y  A+ + P+ P+ NL +G A ++ A+     N+H  + Q
Sbjct: 844  VLLYGHIMARNRSWIPAINYYSRAFAINPDCPITNLSLGLAYLHRAMQRLSDNRHYQILQ 903

Query: 666  GLAFLYN--NLRLAEN---SQEALYNIARAYHHVGLVSLAASYYEKVLA---MYQKDCII 717
            G  FLY   +LR+ E     QEALYN+ +AYH +GL   A  YYE VL    M Q D + 
Sbjct: 904  GFTFLYRYYDLRVNEGLGEKQEALYNLGKAYHFIGLEHYAVKYYEAVLGLSPMSQGDKMT 963

Query: 718  PGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHCTF 765
                     +  G      EAAYNL LIY  SG + LA Q+   +  F
Sbjct: 964  SSESTVSTTYDFGF-----EAAYNLRLIYICSGNIKLAFQISSKYLIF 1006

TFIIIC mediates tRNA and 5S RNA gene activation by binding to intragenic promoter elements. Upstream of the transcription start site, TFIIIC assembles the initiation complex TFIIIB-TFIIIC-tDNA, which is sufficient for RNA polymerase III recruitment and function. Part of the tauA domain of TFIIIC that binds boxA DNA promoter sites of tRNA and similar genes. Sfc4 is the TFIIIB assembling subunit of TFIIIC.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P33339|TFC4_YEAST Transcription factor tau 131 kDa subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFC4 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 76/138 (55%), Gaps = 24/138 (17%)

Query: 633  LPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAEN------SQEALYN 686
            +P++P++NL +G + I+ A+      +H  +  GL +LY   ++ ++       QEA YN
Sbjct: 905  IPDDPMVNLLMGLSHIHRAMQRLTAQRHFQIFHGLRYLYRYHKIRKSLYTDLEKQEADYN 964

Query: 687  IARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIY 746
            + RA+H +GLVS+A  YY +VL  Y             +D K     L++ AAYN  +IY
Sbjct: 965  LGRAFHLIGLVSIAIEYYNRVLENY-------------DDGK-----LKKHAAYNSIIIY 1006

Query: 747  KKSGAVDLARQVLRDHCT 764
            ++SG V+LA  ++  + +
Sbjct: 1007 QQSGNVELADHLMEKYLS 1024

TFIIIC mediates tRNA and 5S RNA gene activation by binding to intragenic promoter elements. Upstream of the transcription start site, TFIIIC assembles the initiation complex TFIIIB-TFIIIC-tDNA, which is sufficient for RNA polymerase III recruitment and function. Part of the tauA domain of TFIIIC that binds boxA DNA promoter sites of tRNA and similar genes. TFC4 is the TFIIIB-assembling subunit of TFIIIC and essential for viability.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q58350|Y940_METJA TPR repeat-containing protein MJ0940 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0940 PE=4 SV=1

 Score = 57.4 bits (137), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 39/171 (22%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           A++   LGRYEEA++ +++V+ L+E   N+ ++  L+ + +GN  +A+  Y         
Sbjct: 159 ANMLRKLGRYEEALACVNKVLELKENDTNAIYLKALILNRIGNCDEALKYY--------- 209

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAV--------------------KADPNDFKLKF 197
                      LI++ + TW +  + EA+                    K  P+D  L +
Sbjct: 210 ---------EKLIDELNVTW-IEVIREAIYLSFLFNKLDKAEKYIEMGLKLRPDDASLWY 259

Query: 198 HLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVD 248
               LY +   F+ A   Y + +QL P + +AL   A++ +K G+IE S++
Sbjct: 260 FKGKLYEKQNKFEEALKYYNKAIQLMPHHTKALLAKARVLEKLGRIEESIE 310

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q04737|Y751_SYNY3 TPR repeat-containing protein slr0751 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0751 PE=4 SV=1

 Score = 57.0 bits (136), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 14/149 (9%)

Query: 105 GRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKL 164
           G Y EA+ +   V+ L  + P +++  GL  + LGN  +A+  Y        +  +L + 
Sbjct: 75  GNYAEAVELFSVVLNLSPDSPETHYNRGLAWERLGNVDQAIADY-------GRSIALDRY 127

Query: 165 IFPWLIEQG-------DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
             P  I +G       D   A+   ++A+  DPN +K  ++ A+ Y +LG + +A   Y 
Sbjct: 128 YIPPYINRGNLYSQQQDHHTAIQDFTQAITYDPNRYKAYYNRANSYFQLGQYAQAIADYN 187

Query: 218 QMVQLCPENIEALKMGAKLYQKSGQIESS 246
           +++ L P+ I A+      + ++GQ++SS
Sbjct: 188 RVLVLRPDYINAIYNRGLAHFQAGQLDSS 216

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 65/150 (43%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           AS +   GR  EA     + + L   L +++  LG +  A G   +A  CY  A   +  
Sbjct: 162 ASAYMRKGRLSEATQCCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYLEAVRIQPT 221

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
            +  W  +    +E GD   A+    EAVK  P       +L ++Y  LG    A   Y+
Sbjct: 222 FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQ 281

Query: 218 QMVQLCPENIEALKMGAKLYQKSGQIESSV 247
             +Q+ P +  A    A +Y + GQ++ ++
Sbjct: 282 HALQMRPNSAMAFGNIASIYYEQGQLDLAI 311

O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q57711|Y941_METJA TPR repeat-containing protein MJ0941 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0941 PE=4 SV=3

 Score = 50.4 bits (119), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 19/155 (12%)

Query: 104 LGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCY----------WLAAC 153
           LGRYE+A+  L+  + L+    N+ ++ G++   +G   +A+ C+          W+ A 
Sbjct: 178 LGRYEDALLCLNRALELKPHDKNALYLKGVLLKRMGKFREALECFKKLIDELNVKWIDAI 237

Query: 154 YKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAA 213
             +   SL       ++   D   A   ++  ++   +D  L +    LY  LG    A 
Sbjct: 238 --RHAVSL-------MLALDDLKDAERYINIGLEIRKDDVALWYFKGELYERLGKLDEAL 288

Query: 214 DVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVD 248
             Y ++++L P  I+AL   A++Y++ G IE++++
Sbjct: 289 KCYEKVIELQPHYIKALLSKARIYERQGNIEAAIE 323

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|P19737|Y425_SYNP2 TPR repeat-containing protein SYNPCC7002_A0425 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A0425 PE=4 SV=2

 Score = 49.3 bits (116), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/177 (19%), Positives = 75/177 (42%)

Query: 89  PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCY 148
           P++  +L   +       + +A+    + + LE      +  LG     LGN ++A+  Y
Sbjct: 61  PQLNALLEQGNEQLTNRNFAQAVQHYRQALTLEANNARIHGALGYALSQLGNYSEAVTAY 120

Query: 149 WLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN 208
             A   +  ++  +  +   L + GD   A++    A +  PN+      LA++    G+
Sbjct: 121 RRATELEDDNAEFFNALGFNLAQSGDNRSAINAYQRATQLQPNNLAYSLGLATVQFRAGD 180

Query: 209 FQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGV 265
           + +A   YR+++     N  AL+       + G+ + +  +  D L+  P +A+  +
Sbjct: 181 YDQALVAYRKVLAKDSNNTMALQNSLTSLLQLGRNQEAAVLFPDLLRQRPNDAELRI 237

Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)

>sp|Q54M21|DNJC3_DICDI DnaJ homolog subfamily C member 3 homolog OS=Dictyostelium discoideum GN=dnajc3 PE=3 SV=1

 Score = 46.6 bits (109), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 47/80 (58%)

Query: 171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEAL 230
           ++G    A+S L+ A++A+P++   +   A +   LG F+ A D Y++++++ P+N +A 
Sbjct: 81  QKGKNILALSDLNRAIEANPDNIHARLKRAKIQSSLGRFEEAMDEYKRVLKIRPDNSQAK 140

Query: 231 KMGAKLYQKSGQIESSVDIL 250
           +   KL +   Q+E   D++
Sbjct: 141 QQIEKLKKVEQQLEKVRDMV 160

May be involved in the unfolded protein response (UPR) during ER stress.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	765
9802741	815	Unknown protein [Arabidopsis thaliana]	0.920	0.863	0.443	1e-169
222615816	931	hypothetical protein OsJ_33584 [Oryza sa	0.979	0.804	0.403	1e-165
218185556	931	hypothetical protein OsI_35748 [Oryza sa	0.979	0.804	0.402	1e-165
224121752	686	predicted protein [Populus trichocarpa]	0.614	0.685	0.514	1e-130
449458227	927	PREDICTED: transcription factor tau subu	0.605	0.499	0.497	1e-118
297736093	915	unnamed protein product [Vitis vinifera]	0.606	0.507	0.495	1e-116
357473897	958	Transcription factor tau subunit sfc4 [M	0.606	0.484	0.469	1e-112
225462328	1110	PREDICTED: general transcription factor	0.358	0.246	0.698	1e-107
357474517	937	Transcription factor tau subunit sfc4 [M	0.641	0.524	0.446	1e-107
356544401	919	PREDICTED: general transcription factor	0.603	0.502	0.473	1e-106

>gi|9802741|gb|AAF99810.1|AC034257_2 Unknown protein [Arabidopsis thaliana]

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 347/782 (44%), Positives = 475/782 (60%), Gaps = 78/782 (9%)

Query: 8   EYEALAERKRKAALQNHNDCTEGEAKKKKMAMESQDNDDERRRFEAIIFGFGSRKRSREA 67
           EYEALAERKRKA                    +SQ N        + + GF     S   
Sbjct: 88  EYEALAERKRKAL------------------ADSQRNPSNISNSTSGVEGFMEFMSSGRR 129

Query: 68  SKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNS 127
            K     KK  RP GSKK+V P+I +   +A   +A GR  EA+ +L EVI+       +
Sbjct: 130 RKSRKYKKKGRRP-GSKKEVAPDILKRFREALFLHAHGRDIEALPILVEVIKQAPAFDIA 188

Query: 128 YHILGLVHDALGNT-AKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAV 186
           Y+ L  V + LG T + +     +AA  K   S  WKL++    EQ + + A S  S+A+
Sbjct: 189 YYYLSRVSEQLGKTESSSTEALKIAANIKGSKSPFWKLLYERFKEQENISVARSYASKAI 248

Query: 187 KADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESS 246
           +ADP+D  LK+  A + +  G ++ AA+ + Q+ + CPE IEALK G + + KSG+ E +
Sbjct: 249 QADPDDIPLKYEYADICLNTGKYREAAETFEQIFRRCPERIEALKWGVQYFLKSGEGERA 308

Query: 247 VDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIK 306
             ILED++K H +E    V+DLLAS+ +++NA+DR LK+I  V  +Y  GKEL  +LKI+
Sbjct: 309 ASILEDHIKSHSSEVGHDVLDLLASVFMKINAHDRALKYIHDVRQIYNVGKELSSSLKIR 368

Query: 307 AGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANA 366
             ICH+ L   ++AE +L+ +  E VS+H E I  +AD   N   + +ALKYY  +EA +
Sbjct: 369 QAICHVHLEEMEQAESVLSILPQEAVSEHPELITNLADELTNIGNFHSALKYY--IEAIS 426

Query: 367 GVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAI 426
              N G L +KIA C ++L+ER+++I+++YKAL  L D +D R+TLASLLLED K +EA+
Sbjct: 427 EPVN-GNLFVKIARCYMSLEERKQAIVFYYKALNELSDTVDVRITLASLLLEDGKRDEAV 485

Query: 427 SLLTPPMSLE-------------------NKYVNSDKTHAWWLNIRIKIKLCRIYKAKGM 467
            +L+PP + E                   N   ++ K  AWW N +I++ LC+IY ++GM
Sbjct: 486 LVLSPPENPEAVHCFIKQYFDSFDAKFCDNVDPDTAKLKAWWKNRKIRMNLCQIYHSEGM 545

Query: 468 IEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYG 527
           +E F +  L LV +S  +E  +                     +  +IK       L   
Sbjct: 546 LEDFANTALQLVLKSRGKENDW---------------------FFQSIKETKNADVLEML 584

Query: 528 KFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSK 587
           K P           +I C+T DPK WFD VR +++ HP+RL  WN YY ++SR  K  S 
Sbjct: 585 KLP-----------KISCDTMDPKQWFDCVRSVIQQHPYRLNAWNCYYSVISRLGKRAST 633

Query: 588 HAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTAL 647
            AK + ++R+KYRD VPPI+I+GH FT+ S HQDAAREYLEAYKL+PE+PLINLCVG AL
Sbjct: 634 EAKFMHHLRSKYRDCVPPILIAGHHFTVTSRHQDAAREYLEAYKLMPESPLINLCVGAAL 693

Query: 648 INLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKV 707
           INLALG RL+N+H+C+AQG AFLYNNLR+  NSQEALYN+ARAY HVGLV+LAASYYEKV
Sbjct: 694 INLALGFRLKNRHECLAQGFAFLYNNLRICSNSQEALYNVARAYQHVGLVTLAASYYEKV 753

Query: 708 LAMYQKDCIIPGFPDH----MEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHC 763
           LA+Y+KD  +P  P+      E+ KP + DLR+EAA+NLHLIYK SGA DLARQVL+DHC
Sbjct: 754 LAIYEKDYTMPKLPNEDPIVAEERKPVNCDLRKEAAHNLHLIYKHSGAFDLARQVLKDHC 813

Query: 764 TF 765
           TF
Sbjct: 814 TF 815

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222615816|gb|EEE51948.1| hypothetical protein OsJ_33584 [Oryza sativa Japonica Group]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 353/874 (40%), Positives = 481/874 (55%), Gaps = 125/874 (14%)

Query: 8   EYEALAERKRKAALQNHNDCTEGEAKKKKMAMESQDNDDERRRFEAIIFGFGSRKRSREA 67
           +YEALA RKRKA  +     TE +A  KK   +     +    F+ ++ GFG R++ R  
Sbjct: 67  DYEALAARKRKALAEER---TERDASSKKPRQDGLSEVEAATVFDQLMEGFGLRRKRRSK 123

Query: 68  SKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEE--------------AISV 113
             +     KRGR +G++ K  PE+ + LGDA+L +   R++E              AI +
Sbjct: 124 DAR-----KRGRKKGTRNKYSPEVTKKLGDATLLFTESRFKEDDSNLYLVYSTKLQAIPI 178

Query: 114 LHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG 173
           LHEV+R+   L NSYH+LG ++   G   KA+    LAA    KD  LWK +    +++ 
Sbjct: 179 LHEVVRIAPNLSNSYHLLGSIYKECGELDKAINFLMLAAYVSPKDVFLWKKLIDMALKKE 238

Query: 174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMG 233
           D   A  C+ +A++ADP D  LKF  A++Y  L ++Q+A ++Y Q+V++ P NI A K  
Sbjct: 239 DAALARHCVLKAMRADPEDVGLKFDCANIYRALHDYQKAGEIYEQIVRIYPSNIVARKAA 298

Query: 234 AKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVY 293
           A++Y+  GQI+ ++++LEDY+    T  D   +DLL S+ ++ NAY+  L+ IE   +V+
Sbjct: 299 AQMYRDCGQIDKAINLLEDYVNAQTTNIDSNHLDLLISLYLRNNAYNEALRLIERAHIVF 358

Query: 294 YSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYS 353
            S   L + L+ KA ICH  LG+   AE+ L  +H E   D+ + I E+A   +N   Y 
Sbjct: 359 GSQHNLPVQLQAKAVICHAYLGDMKHAEVFLQNVHLERSKDNTDVIKEVASTLENLGQYE 418

Query: 354 TALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYK---------------- 397
            A+K+Y M+E +  VHNDG  ++K+ +C + + E+ K+I YF K                
Sbjct: 419 YAIKFYLMIE-DVAVHNDGSSYVKVGQCYMVIGEKRKAIPYFQKVSPDDRDKANTDESDL 477

Query: 398 -------------------------ALQILEDNIDARLTLASLLLEDAKDEEAISLLTPP 432
                                    ALQ +EDNID R+TL+SL ++  K +EAI LL+PP
Sbjct: 478 TFIPVSDPYPIHESMSITYKIVNLEALQRMEDNIDVRITLSSLFVDVDKSDEAIVLLSPP 537

Query: 433 ----------------------MSLENKYVNSDKTHAWWLNIRIKIKLC--------RIY 462
                                 M L N Y N      +   I I I           ++ 
Sbjct: 538 NNSGSKSATDQPKPWWLDGKVKMHLANIYYNKGMFEDFVGTILIPILETLNIEYANRKVR 597

Query: 463 KAKGMI----------------EGFVDMLLPLVCESSHQ---------EETFNHEEHRLL 497
           KAK +                 E     L P+   +  Q         E+     E  + 
Sbjct: 598 KAKKLPTNVLYERAKVLAEQRPESVFQGLRPIASPAELQKASRAKKLLEKRAASNEDTIK 657

Query: 498 IIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVE-KEELYFLGAQIPCNTTDPKLWFDG 556
              LC+TLA LHRY +A+++IN  LKLG      E KEEL  LGAQI     DP+  F+ 
Sbjct: 658 DDLLCQTLALLHRYWEALQVINRTLKLGNDTLADENKEELRSLGAQIAYRAPDPRHGFNY 717

Query: 557 VRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMI 616
           VR++V+ HP+ L  WN YYK+ SR E  FS+H K L   R +  D VPPIIISGH+FT I
Sbjct: 718 VRYVVQQHPYSLAAWNSYYKVTSRIEDRFSRHHKFLLRTREEKTDCVPPIIISGHRFTAI 777

Query: 617 SHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRL 676
           S HQ AAR+YLEAYKL PENP INLCVG+ALINLALG RLQNK+QC+ Q LAFL+  LRL
Sbjct: 778 SQHQSAARDYLEAYKLNPENPFINLCVGSALINLALGFRLQNKNQCIVQALAFLFRYLRL 837

Query: 677 AENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDH-----MEDWKPGH 731
            +NSQEALYNIARAYHHVGL +LAA YYEK LA+  KD  IP  P        +D KPG+
Sbjct: 838 CDNSQEALYNIARAYHHVGLNTLAAIYYEKALAVEVKDYPIPRLPYEENSCAQQDLKPGY 897

Query: 732 SDLRREAAYNLHLIYKKSGAVDLARQVLRDHCTF 765
            D+RREAA+NLHLIYKKSGA DLAR++LR +CT 
Sbjct: 898 CDVRREAAFNLHLIYKKSGADDLARRILRTYCTI 931

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218185556|gb|EEC67983.1| hypothetical protein OsI_35748 [Oryza sativa Indica Group]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 352/874 (40%), Positives = 482/874 (55%), Gaps = 125/874 (14%)

Query: 8   EYEALAERKRKAALQNHNDCTEGEAKKKKMAMESQDNDDERRRFEAIIFGFGSRKRSREA 67
           +YEALA RKRKA  +     TE +A  KK   +     +    F+ ++ GFG R++ R  
Sbjct: 67  DYEALAARKRKALAEER---TERDASSKKPRQDGLSEVEAATVFDQLMEGFGLRRKRRSK 123

Query: 68  SKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEE--------------AISV 113
             +     KRGR +G++ K  PE+ + LGDA+L +   R++E              AI +
Sbjct: 124 DAR-----KRGRKKGTRNKYSPEVTKKLGDATLLFTESRFKEDDSNLYLVYSTKLQAIPI 178

Query: 114 LHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG 173
           LHEV+R+   L NSYH+LG ++   G   KA+    LAA    KD  LWK +    +++ 
Sbjct: 179 LHEVVRIAPNLSNSYHLLGSIYKECGELDKAINFLMLAAYVSPKDVFLWKKLIDMALKKE 238

Query: 174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMG 233
           D   A  C+ +A++ADP D  LKF  A++Y  L ++Q+A ++Y Q+V++ P NI A K  
Sbjct: 239 DAALARHCVLKAMRADPEDVGLKFDCANIYRALRDYQKAGEIYEQIVRIYPSNIVARKAA 298

Query: 234 AKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVY 293
           A++Y+  GQI+ ++++LEDY+    T  D   +DLL S+ ++ NAY+  L+ I+   +V+
Sbjct: 299 AQMYRDCGQIDKAINLLEDYVNAQTTNIDSNHLDLLISLYLRNNAYNEALRLIDRAHIVF 358

Query: 294 YSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYS 353
            S   L + L+ KA ICH  LG+   AE+ L  +H E   D+ + I E+A   +N   Y 
Sbjct: 359 GSQHNLPVQLQAKAVICHAYLGDMKHAEVFLQNVHLERSKDNTDVIKEVASTLENLGQYE 418

Query: 354 TALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYK---------------- 397
            A+K+Y M+E +  VHNDG  ++K+ +C + + E+ K+I YF K                
Sbjct: 419 YAIKFYLMIE-DVAVHNDGSSYVKVGQCYMVIGEKRKAIPYFQKVSPDDRDKANTDESDL 477

Query: 398 -------------------------ALQILEDNIDARLTLASLLLEDAKDEEAISLLTPP 432
                                    ALQ +EDNID R+TL+SL ++  K +EAI LL+PP
Sbjct: 478 TFIPVSDPYPIHESMSITYKIVNLEALQRMEDNIDVRITLSSLFVDVDKSDEAIVLLSPP 537

Query: 433 ----------------------MSLENKYVNSDKTHAWWLNIRIKIKLC--------RIY 462
                                 M L N Y N      +   I I I           ++ 
Sbjct: 538 NNSGSKSATDQPKPWWLDGKVKMHLANIYYNKGMFEDFVGTILIPILETLNIEYANRKVR 597

Query: 463 KAKGMI----------------EGFVDMLLPLVCESSHQ---------EETFNHEEHRLL 497
           KAK +                 E     L P+   +  Q         E+     E  + 
Sbjct: 598 KAKKLPTNVLYERAKVLAEQRPESVFQGLRPIASPAELQKASRAKKLLEKRAASNEDTIK 657

Query: 498 IIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVE-KEELYFLGAQIPCNTTDPKLWFDG 556
              LC+TLA LHRY +A+++IN  LKLG      E KEEL  LGAQI     DP+  F+ 
Sbjct: 658 DDLLCQTLALLHRYWEALQVINRTLKLGNDTLADENKEELRSLGAQIAYRAPDPRHGFNY 717

Query: 557 VRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMI 616
           VR++V+ HP+ L  WN YYK+ SR E  FS+H K L  +R +  D VPPIIISGH+FT I
Sbjct: 718 VRYVVQQHPYSLAAWNSYYKVTSRIEDRFSRHHKFLLRIREEKTDCVPPIIISGHRFTAI 777

Query: 617 SHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRL 676
           S HQ AAR+YLEAYKL PENP INLCVG+ALINLALG RLQNK+QC+ Q LAFL+  LRL
Sbjct: 778 SQHQSAARDYLEAYKLNPENPFINLCVGSALINLALGFRLQNKNQCIVQALAFLFRYLRL 837

Query: 677 AENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDH-----MEDWKPGH 731
            +NSQEALYNIARAYHHVGL +LAA YYEK LA+  KD  IP  P        +D KPG+
Sbjct: 838 CDNSQEALYNIARAYHHVGLNTLAAIYYEKALAVEVKDYPIPRLPYEENSCAQQDLKPGY 897

Query: 732 SDLRREAAYNLHLIYKKSGAVDLARQVLRDHCTF 765
            D+RREAA+NLHLIYKKSGA DLAR++LR +CT 
Sbjct: 898 CDVRREAAFNLHLIYKKSGADDLARRILRTYCTI 931

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121752|ref|XP_002330644.1| predicted protein [Populus trichocarpa] gi|222872248|gb|EEF09379.1| predicted protein [Populus trichocarpa]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 248/482 (51%), Positives = 334/482 (69%), Gaps = 12/482 (2%)

Query: 1   MEDEECLEYEALAERKRKAALQNHNDCTEGEAKKKKMAMESQDNDDERRRFEAIIFGFGS 60
           ME  +  EYEALAE+KRK       + +  +A+++ M   S    +E   F         
Sbjct: 65  MEQNQQFEYEALAEKKRKTLADAKGEGSAKKARQEDMTGASLAEIEEIMNF--------- 115

Query: 61  RKRSREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRL 120
                   ++    K+RGR +GSK K+ PEI RMLGDA+LHYA G YEEA++VL EV++ 
Sbjct: 116 ---GMRKKRRRRMPKRRGRRKGSKNKLSPEITRMLGDATLHYAHGNYEEALTVLSEVVKR 172

Query: 121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMS 180
              + +SYH LGLVH ALGNT KAM  Y +AA  + KDSSLWKL+F W +EQGD   A  
Sbjct: 173 APLVADSYHTLGLVHKALGNTEKAMKFYRIAAFLRPKDSSLWKLLFSWHVEQGDIARAWK 232

Query: 181 CLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS 240
           CLS+A+ ADP+D  L+   A  Y ELG+ QRAA+ Y Q+V++CPE++EA+K  AK++   
Sbjct: 233 CLSKAISADPDDISLRSLHALFYDELGDHQRAAESYEQIVRICPEDVEAIKTAAKMHLNC 292

Query: 241 GQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELL 300
           GQI+  V ILEDYLKGHP+EAD  VI LLA + ++++A++  L+HIE   ++YYSGKEL 
Sbjct: 293 GQIKRCVGILEDYLKGHPSEADLSVIILLADVFMEIDAHNNALQHIEHAQMIYYSGKELP 352

Query: 301 LALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYH 360
           L L IKAGICH+ LGN +KAEI  +A+  EN S H E I ++AD F + E + +ALKYYH
Sbjct: 353 LELMIKAGICHVFLGNIEKAEIHFSALQQENFSIHPEFITKVADAFMSTECFHSALKYYH 412

Query: 361 MLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDA 420
           MLE N G  N+G +H+KIA+C L+L +R K+I++FYKAL +L+D+IDAR+ LASL+LEDA
Sbjct: 413 MLELNVGADNEGEIHVKIAQCYLSLNDRAKAIMFFYKALPMLKDSIDARVALASLILEDA 472

Query: 421 KDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVC 480
           K++EAISLL+PP  L++   NS   + WWL+ +IK+KLC IYKAKGM+E FV+ + PLV 
Sbjct: 473 KEDEAISLLSPPKDLDSLDSNSYMQNPWWLDGKIKLKLCHIYKAKGMLEDFVNTISPLVR 532

Query: 481 ES 482
           ES
Sbjct: 533 ES 534

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458227|ref|XP_004146849.1| PREDICTED: transcription factor tau subunit sfc4-like [Cucumis sativus]

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/482 (49%), Positives = 328/482 (68%), Gaps = 19/482 (3%)

Query: 5   ECLEYEALAERKRKAALQNHNDCTEGEAKKKKMAMESQDNDDERRRFEAIIFGFGSRKRS 64
           E LEYEALAE+KRKA     N  +E  AK+ ++   S  + DE    EA+   +GSR++ 
Sbjct: 85  ERLEYEALAEKKRKALA---NGQSERAAKRGRVEDISGASFDEI--LEAM--NYGSRRKL 137

Query: 65  REASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEEL 124
           +E        KKRGR +GSKKK+  ++ ++LGDA+L YA G +E+AIS+L +V+    +L
Sbjct: 138 KEP-------KKRGRRKGSKKKLNRDVTKLLGDATLCYAQGEHEKAISLLRQVVLRAPDL 190

Query: 125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSE 184
           P+SYH LGLV++A+G+  KAMG Y LAA    KDSSLWKL+F W I++GD   A  CLS+
Sbjct: 191 PDSYHTLGLVYNAIGDDVKAMGFYMLAAHLMPKDSSLWKLLFSWSIDRGDIDQASYCLSK 250

Query: 185 AVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE 244
           A+KA+P+D  L FH ASLY+E G+ ++AA+ Y Q+ Q C  N+EAL  GAKLYQK G +E
Sbjct: 251 AIKAEPDDINLLFHRASLYLERGDCEKAAETYDQIHQQCLGNVEALMTGAKLYQKCGHLE 310

Query: 245 SSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALK 304
            ++ ILEDY+KGHP+EAD  V+DLLAS+ +    + + L+ IE  D VY +G EL L L 
Sbjct: 311 RAICILEDYIKGHPSEADLDVVDLLASLYMGSKEFSKALERIEHADRVYCAGNELPLNLT 370

Query: 305 IKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEA 364
            KAGICH  LG+ +KAE L   +  E   DH+  + E+AD   + + YS ALKYY M E 
Sbjct: 371 TKAGICHAHLGDLEKAECLFANLRRETTYDHSNLMIEVADSLMSLKHYSWALKYYLMSEE 430

Query: 365 NAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEE 424
             G+     L+LKIAEC L+  ERE++I++FYK LQ +EDNI+ARLTLASLLLE+A+D+E
Sbjct: 431 VNGI-----LYLKIAECYLSTNEREQAIVFFYKVLQHVEDNINARLTLASLLLEEARDKE 485

Query: 425 AISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSH 484
           AISLL+PP        +S K   WWLN ++K+KLC IY+ +G++E FV+++ PLV ES +
Sbjct: 486 AISLLSPPKDSNPTSSSSSKLKPWWLNEKVKLKLCHIYRTRGLLENFVEVIFPLVRESLY 545

Query: 485 QE 486
            E
Sbjct: 546 IE 547

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736093|emb|CBI24131.3| unnamed protein product [Vitis vinifera]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 262/529 (49%), Positives = 335/529 (63%), Gaps = 65/529 (12%)

Query: 2   EDEECLEYEALAERKRKAALQNHNDCT-EGEAKKKKMAMESQDNDDERRRFEAIIFGFGS 60
           E  E LEYEALAE+KRKA  Q    C  EG AKK      ++  DD +  F+ I+     
Sbjct: 18  EQFERLEYEALAEKKRKALSQ----CQFEGLAKK------ARHEDDSQAIFDEIM----- 62

Query: 61  RKRSREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRL 120
              +    +K    KK GR +G K K+ PE+ R LG+A+LHYA GRYEEAI VL EV+RL
Sbjct: 63  ETMNHRRRRKSRKRKKSGRRKGLKNKLSPEVTRKLGEANLHYAHGRYEEAILVLKEVVRL 122

Query: 121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMS 180
              LP++YH  GLV++A G+  +A+  Y LAA    KDSSLWKL+  W IEQG+T  A  
Sbjct: 123 APNLPDAYHTFGLVYNAFGDKKRALNFYMLAAHLTPKDSSLWKLLVTWSIEQGNTGQARY 182

Query: 181 CLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS 240
           CLS+A+ ADP D  L+FH ASLYVELG +Q+AA+ Y Q+ QL PEN+EA K GAKLY+K 
Sbjct: 183 CLSKAITADPEDISLRFHRASLYVELGEYQKAAESYEQISQLFPENVEAPKTGAKLYKKC 242

Query: 241 GQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELL 300
           GQ+E SV ILEDY+K HPT+AD  ++D+LA++ ++ N +DR L+HIE   L+Y SGK+L 
Sbjct: 243 GQVERSVSILEDYIKDHPTKADLSIVDMLAAVCMENNVHDRALQHIEHAQLLYCSGKDLP 302

Query: 301 LALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYH 360
           L L IKAGICHI LGN +KAE L + +  E   DHA  I+E+AD F + ELY  ALKYY 
Sbjct: 303 LHLTIKAGICHIHLGNIEKAEALFSVLQRETC-DHAGLISEVADSFMSLELYDFALKYYL 361

Query: 361 MLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYK----------------------- 397
           MLE N G  N G LHLKIA+C L+LKER ++I +FYK                       
Sbjct: 362 MLEGNVGRDN-GFLHLKIAQCYLSLKERVQAIPFFYKENQEADRLAKRGASIPIKCSEDF 420

Query: 398 -----------------------ALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMS 434
                                   L +L+DNIDARLTLA+LLLE AK++EAI LL+PP +
Sbjct: 421 FFSLGSPCKLMIVILFLVSIFFYTLDVLQDNIDARLTLATLLLEGAKEDEAILLLSPPKN 480

Query: 435 LENKY-VNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCES 482
           LE+    NSD+   WWLN ++K+KL  IY++KGM + FVD + PLV ES
Sbjct: 481 LESTVDPNSDEFQPWWLNGKVKLKLSHIYRSKGMSDEFVDAIFPLVRES 529

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473897|ref|XP_003607233.1| Transcription factor tau subunit sfc4 [Medicago truncatula] gi|355508288|gb|AES89430.1| Transcription factor tau subunit sfc4 [Medicago truncatula]

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/481 (46%), Positives = 312/481 (64%), Gaps = 17/481 (3%)

Query: 4   EECLEYEALAERKRKAALQNHNDCTEGEAKKKKMAMESQDNDDERRRFEAIIFGFGSRKR 63
           ++ +EY AL  RKRK  LQ H +    E   KK   +     +     E I FG G R R
Sbjct: 91  QKSIEYRALDNRKRKLPLQPHRE----ETSSKKAGEDDIFGVNPAEVEEFINFGEGKRPR 146

Query: 64  SREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEE 123
            + + K+           GSKKK+  +I +MLGDA +HYA GR++ AISVLHEV+RLE  
Sbjct: 147 KKRSKKRGRQK-------GSKKKLDEKISQMLGDAHVHYANGRHKMAISVLHEVVRLEPN 199

Query: 124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLS 183
           LP+SYH LGLVH A+G+    MG Y + A    KD +LWK ++ W I Q D   A  C+S
Sbjct: 200 LPDSYHTLGLVHGAIGDHENEMGFYMITAHLTPKDPTLWKTLYVWSIGQDDIGQASYCIS 259

Query: 184 EAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQI 243
           +A+KADP D  L+ H A LY E  N+Q+AA+ Y Q+ QLC EN++ALK  AK YQK GQ+
Sbjct: 260 KAIKADPQDSSLRSHQAMLYAESQNYQKAAEAYEQVYQLCRENVDALKAAAKYYQKCGQV 319

Query: 244 ESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLAL 303
           E S+ ILEDYLK  P   +  V+DLL ++L+++ A+DR L++IE   +V   GKEL L L
Sbjct: 320 ERSICILEDYLKNKPDGVNASVVDLLGAILMEIKAHDRALQYIEQSQVV---GKELPLNL 376

Query: 304 KIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLE 363
           K+KAGICH+ LGN + A++    +  EN S H ESI E+AD F     Y++AL Y+ MLE
Sbjct: 377 KVKAGICHVHLGNLEMAQVFFNDLKPENASKHVESITEVADSFMGLGHYNSALNYFKMLE 436

Query: 364 ANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDE 423
            N+  + DG L+LKIA C  AL ER+++II FY  L+ L+D+++AR+TLASLL+E+ K+ 
Sbjct: 437 GNSK-NEDGLLYLKIARCYQALGERKQAIISFYIVLETLQDDVEARITLASLLVEEGKEN 495

Query: 424 EAISLLTPP--MSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCE 481
           EAISLL+PP     ++   +S+K + WW+++RIK+KLC I++ +GM+  FVD+  PLV E
Sbjct: 496 EAISLLSPPKDSGTDSGEAHSEKPNRWWIDVRIKLKLCNIFQIRGMLTDFVDVCFPLVRE 555

Query: 482 S 482
           S
Sbjct: 556 S 556

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462328|ref|XP_002265699.1| PREDICTED: general transcription factor 3C polypeptide 3-like [Vitis vinifera]

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/279 (69%), Positives = 228/279 (81%), Gaps = 5/279 (1%)

Query: 492  EEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEK-EELYFLGAQIPCNTTDP 550
            EEH  LI+DLCK LASL +Y +A+ IINL L+L Y   P+EK EEL  LGAQI  N TDP
Sbjct: 832  EEHHHLILDLCKALASLRKYWEALDIINLTLRLAYNIMPIEKKEELRSLGAQIAYNITDP 891

Query: 551  KLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISG 610
            K  FD V+++V+ HPH L  WN YYK++SR E  +SKH+KLL ++R +++D VPPI+I G
Sbjct: 892  KHGFDYVKYIVQQHPHSLAAWNCYYKVISRLENRYSKHSKLLHSMRVRHKDCVPPIVIFG 951

Query: 611  HQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFL 670
            HQFTMIS HQ AA+EYLEAYKL+PENPLINLC GTALIN+ALG RLQNKHQC+AQGLAFL
Sbjct: 952  HQFTMISQHQIAAKEYLEAYKLMPENPLINLCAGTALINIALGFRLQNKHQCLAQGLAFL 1011

Query: 671  YNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFP----DHMED 726
            YNNLRL ENSQEALYNIARAYHHVGLVSLA +YYEKVLA +++D  IP  P    D +E+
Sbjct: 1012 YNNLRLCENSQEALYNIARAYHHVGLVSLAVTYYEKVLATHERDYPIPRLPYENTDLVEN 1071

Query: 727  WKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHCTF 765
             KPG+ DLRREAAYNLHLIYKKSGA+DLARQVL+DHCT 
Sbjct: 1072 RKPGYCDLRREAAYNLHLIYKKSGALDLARQVLKDHCTI 1110

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474517|ref|XP_003607543.1| Transcription factor tau subunit sfc4 [Medicago truncatula] gi|355508598|gb|AES89740.1| Transcription factor tau subunit sfc4 [Medicago truncatula]

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 227/508 (44%), Positives = 319/508 (62%), Gaps = 17/508 (3%)

Query: 4   EECLEYEALAERKRKAALQNHNDCTEGEAKKKKMAMESQDNDDERRRFEAIIFGFGSRKR 63
           ++ ++Y AL  RKRK   Q H + T       K A E   +       E  +   G  KR
Sbjct: 91  QKSIQYRALDNRKRKPPQQPHREETSS-----KKAREDDISGVGLADIEEELMNLGHGKR 145

Query: 64  SREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEE 123
           S++   K    +K     GSKKK+  +I +M GDA +HY   RY+ AI VLHEV+RLE  
Sbjct: 146 SKKKRSKKRGRQK-----GSKKKLDEKISQMFGDALMHYTSRRYDMAIDVLHEVVRLEPN 200

Query: 124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLS 183
           LP+ YHILG VH A+G+    MG Y + A    KDSSLW+ +F W I+QGD   A  C+S
Sbjct: 201 LPDPYHILGAVHGAIGDHENEMGFYMIYAHLTPKDSSLWERLFVWSIKQGDAGQASYCIS 260

Query: 184 EAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQI 243
           +A+KADP D  L+ H A LY E  N+Q+AA+ Y Q+ QLC E+ +ALK  AK Y+K GQ+
Sbjct: 261 KAIKADPQDISLRRHQALLYAESQNYQKAAEAYEQIHQLCRED-DALKEAAKFYRKCGQV 319

Query: 244 ESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLAL 303
           E S+ ILEDYLK  P   +  V+DLL ++L+++ A+DR L+ IE   +V   GKEL L L
Sbjct: 320 ERSICILEDYLKSKPDGVNASVVDLLGAILMEIKAHDRALQFIEQSQVV---GKELPLNL 376

Query: 304 KIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLE 363
           K+KAGICH+ LGN + A++    +  EN S H E I E+AD       Y++AL Y+ MLE
Sbjct: 377 KVKAGICHVHLGNMEIAQVFFNDLKPENASKHVELITEVADSLMGLGHYNSALNYFKMLE 436

Query: 364 ANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDE 423
            N+   N G L+LKIA C  +L+ER+++II FYKAL+ L+D+++AR+ LASLL+E+ K+ 
Sbjct: 437 GNSKNEN-GFLYLKIARCYRSLEERKQAIISFYKALETLQDDVEARVALASLLVEEGKEN 495

Query: 424 EAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESS 483
           EAISLL+PP   ++   +S+K++ WW+++RIK+KLC I++ +GM+  FV++ LPLV ES 
Sbjct: 496 EAISLLSPPKDSDSGEAHSEKSNRWWVDVRIKLKLCNIFQIRGMLNDFVNVSLPLVHESL 555

Query: 484 H--QEETFNHEEHRLLIIDLCKTLASLH 509
           H          + RL I DL K +  L+
Sbjct: 556 HVPAPRRKGQSKRRLSIRDLEKRVRVLN 583

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544401|ref|XP_003540640.1| PREDICTED: general transcription factor 3C polypeptide 3-like [Glycine max]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/482 (47%), Positives = 309/482 (64%), Gaps = 20/482 (4%)

Query: 7   LEYEALAERKRKAALQNHNDCTEGEAKKKKMAMESQDNDDERRRFEAIIFGFGSRKRSRE 66
           LE EALA++KRKA  Q H+     E    KMA E   +  +       +  +G RKRSR+
Sbjct: 74  LEREALADKKRKAPEQCHS-----EEPPSKMAREGDISGAKIAEIMEAMDYYGMRKRSRK 128

Query: 67  ASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPN 126
             K+          +GSK +V P++ +M GDA+ HYA G Y+ A +VL EVIRL   L  
Sbjct: 129 PKKRGRR-------KGSKNRVDPKLTQMQGDATFHYACGDYDRAKAVLCEVIRLAPNLHE 181

Query: 127 SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI------EQGDTTWAMS 180
           SYH LGLV+ +L +  +AM  Y +AA    K+S LWK IF W I      EQG    A  
Sbjct: 182 SYHTLGLVYTSLQDYKRAMALYLIAAHLDPKESPLWKTIFTWSITFFKCREQGYVDQAGY 241

Query: 181 CLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS 240
           CL +A+KADP D  L+FHLA LY ELG++Q+AA  Y Q+ +LC ENI+ALK  AK Y+K 
Sbjct: 242 CLLKAIKADPKDVTLRFHLARLYAELGHYQKAAVTYEQVHKLCCENIDALKAAAKFYKKC 301

Query: 241 GQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELL 300
           GQ+E S+ ILEDY+K  P  A+  V+DLL ++L++  A+DR L+HIE    V  + KEL 
Sbjct: 302 GQVEYSIQILEDYIKSQPDGANVSVVDLLGTVLMETKAHDRALQHIEHAQTV-NARKELP 360

Query: 301 LALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYH 360
           L LKIKAGICH  LGN ++A+ L   +  EN S H + + ++AD     E Y+ AL YY 
Sbjct: 361 LNLKIKAGICHAHLGNMERAQALFNDLKPENASKHIDLVTKVADSLMGLEHYNPALNYYL 420

Query: 361 MLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDA 420
           MLE N    N G L+LKIA C ++LKER ++I+++ KAL+ L+D++DAR+TLASLLLE+A
Sbjct: 421 MLEGNIEKEN-GLLYLKIARCYMSLKERSQAILFYSKALETLQDDVDARITLASLLLEEA 479

Query: 421 KDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVC 480
           K++EAISLL+PP   +     S+K++ WW +IRIK+KLC IY  +G ++ FVD + PLV 
Sbjct: 480 KEDEAISLLSPPKDSDFGEAPSEKSNRWWADIRIKLKLCNIYWNRGTLDDFVDTIFPLVR 539

Query: 481 ES 482
           ES
Sbjct: 540 ES 541

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	765
TAIR|locus:2007928	896	AT1G17680 [Arabidopsis thalian	0.407	0.348	0.586	7.8e-183
UNIPROTKB|I3LAX1	916	GTF3C3 "Uncharacterized protei	0.335	0.280	0.267	2.1e-49
DICTYBASE|DDB_G0278321	997	gtf3C3 "transcription factor I	0.358	0.274	0.285	2.1e-48
UNIPROTKB|F1NEE6	913	GTF3C3 "Uncharacterized protei	0.328	0.274	0.267	1.1e-43
RGD|1309185	883	Gtf3c3 "general transcription	0.333	0.288	0.271	3.4e-39
UNIPROTKB|E1BPR9	886	GTF3C3 "Uncharacterized protei	0.334	0.288	0.287	6e-38
UNIPROTKB|E2QYG3	883	GTF3C3 "Uncharacterized protei	0.333	0.288	0.269	1.3e-37
UNIPROTKB|Q9Y5Q9	886	GTF3C3 "General transcription	0.333	0.287	0.250	6.9e-37
POMBASE|SPCC16C4.14c	1006	sfc4 "transcription factor TFI	0.202	0.154	0.351	2.2e-27
ZFIN|ZDB-GENE-040914-80	334	gtf3c3 "general transcription	0.317	0.727	0.287	3.5e-26

TAIR|locus:2007928 AT1G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 959 (342.6 bits), Expect = 7.8e-183, Sum P(3) = 7.8e-183
 Identities = 189/322 (58%), Positives = 236/322 (73%)

Query:   449 WLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASL 508
             W  IR  +   R  + +  I+   +     VC  S +EE    EE+  L +DLCK LASL
Sbjct:   580 WRKIRATLNETRRIRERAAIKAHNED----VCSES-EEEVIKDEEYHRLFVDLCKALASL 634

Query:   509 HRYEDAIKIINLILKLGYGKFPVE-KEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHR 567
              RY +A++I+NL  +L     PVE K+EL  LGA+I C+T DPK WFD VR +++ HP+R
Sbjct:   635 QRYWEALEIVNLARRLDAKMLPVETKKELQSLGAKISCDTMDPKQWFDCVRSVIQQHPYR 694

Query:   568 LTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYL 627
             L  WN YY ++SR  K  S  AK + ++R+KYRD VPPI+I+GH FT+ S HQDAAREYL
Sbjct:   695 LNAWNCYYSVISRLGKRASTEAKFMHHLRSKYRDCVPPILIAGHHFTVTSRHQDAAREYL 754

Query:   628 EAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNI 687
             EAYKL+PE+PLINLCVG ALINLALG RL+N+H+C+AQG AFLYNNLR+  NSQEALYN+
Sbjct:   755 EAYKLMPESPLINLCVGAALINLALGFRLKNRHECLAQGFAFLYNNLRICSNSQEALYNV 814

Query:   688 ARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDH----MEDWKPGHSDLRREAAYNLH 743
             ARAY HVGLV+LAASYYEKVLA+Y+KD  +P  P+      E+ KP + DLR+EAA+NLH
Sbjct:   815 ARAYQHVGLVTLAASYYEKVLAIYEKDYTMPKLPNEDPIVAEERKPVNCDLRKEAAHNLH 874

Query:   744 LIYKKSGAVDLARQVLRDHCTF 765
             LIYK SGA DLARQVL+DHCTF
Sbjct:   875 LIYKHSGAFDLARQVLKDHCTF 896

GO:0005634 "nucleus" evidence=ISM

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

UNIPROTKB|I3LAX1 GTF3C3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 295 (108.9 bits), Expect = 2.1e-49, Sum P(3) = 2.1e-49
 Identities = 72/269 (26%), Positives = 136/269 (50%)

Query:   497 LIIDLCKTLASLHRYEDAIKIINLILKL-GYGKFPVEKEELYFLGAQIPCNTTDPKLWFD 555
             L++    +L  L R+++A  +++  L+   + +   +++EL + G        +    ++
Sbjct:   658 LLLKAIYSLCDLSRFQEAELLVDSSLEYYSFYEDRQKRKELEYFGLSAAILDKNFGKAYN 717

Query:   556 GVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTM 615
              +R MV  H ++   WN + ++    + +  +H +    +  K  D     +++GH   +
Sbjct:   718 YIRLMVMEHVNKPQLWNIFNQITMHSQDV--RHHRFCLRLMLKNPDSHALCVLNGHNAFV 775

Query:   616 ISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLR 675
                 + A  +Y++A++  P  PL +LC+G   I++A    +  +H  V QG +FL   L 
Sbjct:   776 SGSFKHALGQYVQAFRTYPHEPLYSLCIGLTFIHMASQKYVLRRHALVVQGFSFLNRYLS 835

Query:   676 LAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLR 735
             +    QE+ YN+ R  H +GLV LA  YY+K L +       P  P  +E  +    DLR
Sbjct:   836 IRGPCQESFYNLGRGLHQLGLVHLAIHYYQKALEL-------P--PLEIEGIEVDQLDLR 886

Query:   736 REAAYNLHLIYKKSGAVDLARQVLRDHCT 764
             R+ AYNL LIY+ SG + +A+++L  +C+
Sbjct:   887 RDIAYNLSLIYQSSGNIGMAQKLLYTYCS 915

GO:0000127 "transcription factor TFIIIC complex" evidence=IEA

DICTYBASE|DDB_G0278321 gtf3C3 "transcription factor IIIC-gamma subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 352 (129.0 bits), Expect = 2.1e-48, Sum P(2) = 2.1e-48
 Identities = 81/284 (28%), Positives = 149/284 (52%)

Query:   481 ESSHQ-EETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFL 539
             +S H   E  + E++  L++D  K    L+R ++A + +   L+  + +  +   +L FL
Sbjct:   719 QSEHPYAELLDEEDYFNLLLDSSKIFVHLNRQQEASQYLRYALRNIHFENGLFSHQLKFL 778

Query:   540 GAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKY 599
                +  N  +  L +  V+++    P+    WN + K++  +    +   + L  +  KY
Sbjct:   779 TVAVAFNDKNYYLAYKHVKYVCSKKPYSNRVWNLFNKIIVNYGNRSTVQNRFLTKINEKY 838

Query:   600 RDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNK 659
              D +P +I+ G+Q     + + A  EY++AY+L P++PLINL +   +++  +G +  N+
Sbjct:   839 SDSIPVLIMLGNQNKQTDNARGALFEYIKAYRLCPDDPLINLLISVLILSQVMGRKQANR 898

Query:   660 HQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPG 719
             H+      +FLY    L   SQE+LYN+ R YH +G+ ++A +YY+ VL  Y+ +     
Sbjct:   899 HRIAITSYSFLYKYYNLRGKSQESLYNLGRGYHQLGIYNMAINYYDMVLN-YEDEI---- 953

Query:   720 FPDHMEDWKPGHSD-LRREAAYNLHLIYKKSGAVDLARQVLRDH 762
               D  E  +   +D L+ EAA+NL LIYK  G   LA ++L+ +
Sbjct:   954 --DE-ETGEINKNDSLKCEAAFNLSLIYKSKGNTSLANEILKKY 994

GO:0000127 "transcription factor TFIIIC complex" evidence=ISS

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1NEE6 GTF3C3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 280 (103.6 bits), Expect = 1.1e-43, Sum P(3) = 1.1e-43
 Identities = 71/265 (26%), Positives = 136/265 (51%)

Query:   497 LIIDLCKTLASLHRYEDAIKIINLILKLGYGKFP--VEKEELYFLGAQIPCNTTDPKLWF 554
             L++    +L  L RY++A  +++  L+  Y  +    +++EL + G        + +  +
Sbjct:   655 LLLKAIYSLCDLSRYKEAELLVDSSLEY-YSFYDDRQKRKELEYFGLSAAILDKNFRKAY 713

Query:   555 DGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFT 614
             + +R MV  + ++   WN + ++  + + +  +H +    +  K  D     +++GH   
Sbjct:   714 NYIRIMVMENVNKPQLWNIFNQVTMQSQDV--RHHRFCLRLMLKNPDNHALCVLNGHNAF 771

Query:   615 MISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNL 674
             +    + A  +Y++A++  P+ PL +LC+G   I++A    +  +H  + QG +FL+  L
Sbjct:   772 VSGSFKHALGQYVQAFRANPDEPLYSLCIGLTFIHMASQKYVLKRHALLVQGFSFLHRYL 831

Query:   675 RLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDL 734
              L    QE  YN+ R  H +GL+ LA  YY+KVL +       P  P  +E  +   +DL
Sbjct:   832 DLRGPCQETFYNLGRGLHQLGLLHLAIHYYQKVLEL-------P--PLTLEGIETDQTDL 882

Query:   735 RREAAYNLHLIYKKSGAVDLARQVL 759
             RR+ A+NL LIY  SG   +A+++L
Sbjct:   883 RRDTAFNLSLIYHSSGNTRMAQKML 907

GO:0000127 "transcription factor TFIIIC complex" evidence=IEA

RGD|1309185 Gtf3c3 "general transcription factor IIIC, polypeptide 3" [Rattus norvegicus (taxid:10116)]

 Score = 291 (107.5 bits), Expect = 3.4e-39, Sum P(2) = 3.4e-39
 Identities = 73/269 (27%), Positives = 135/269 (50%)

Query:   497 LIIDLCKTLASLHRYEDAIKIINLILKLGYGKFP--VEKEELYFLGAQIPCNTTDPKLWF 554
             L++    TL+ L R+++A  +++  L+  Y  +    +++EL + G        + +  +
Sbjct:   625 LLLKAIYTLSDLSRFQEAELLVDSSLEY-YSFYDDRQKRKELEYFGLSAAILDKNFRKAY 683

Query:   555 DGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFT 614
             D +R MV  + ++   WN + ++    + +  +H +    +  K  D     +++GH   
Sbjct:   684 DYIRVMVMENVNKPQLWNIFNQVTMHSQDV--RHHRFCLRLMLKNPDNHALCVLNGHNAF 741

Query:   615 MISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNL 674
             +    + A  +Y++A++  P  PL NLC+G   I++A    +  +H    QG +FL   L
Sbjct:   742 VSGSFKHALGQYVQAFRAYPSEPLYNLCIGLTFIHMASQKYVLKRHALTVQGFSFLNRYL 801

Query:   675 RLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDL 734
              +    QE+ YN+ R  H +GL  LA  YY+K LA+       P  P  +E  +    DL
Sbjct:   802 SIRGPCQESFYNLGRGLHQLGLTHLAIHYYQKALAL-------P--PIVVEGIEVDQLDL 852

Query:   735 RREAAYNLHLIYKKSGAVDLARQVLRDHC 763
             RR+ AYN+ LIY+ SG   +A+++L  +C
Sbjct:   853 RRDIAYNMSLIYQSSGNTAMAQKLLYTYC 881

GO:0000127 "transcription factor TFIIIC complex" evidence=IEA;ISO

UNIPROTKB|E1BPR9 GTF3C3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 274 (101.5 bits), Expect = 6.0e-38, Sum P(2) = 6.0e-38
 Identities = 78/271 (28%), Positives = 132/271 (48%)

Query:   497 LIIDLCKTLASLHRYEDAIKIINLILKLG--YGKFPVEKEELYF-LGAQIPCNTTDPKLW 553
             L++    +L  L R+++A  +++  L+    Y   P  KE  YF L A I          
Sbjct:   627 LLLKAIYSLCDLSRFQEAELLVDSSLEYCSFYEDKPKRKELEYFGLSAAILDKNFRKAYN 686

Query:   554 FDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQF 613
             +   R MV  + ++   WN + ++    +++  +H +    +  K  D     +++GH  
Sbjct:   687 YISFRIMVMENVNKPQLWNIFNQVTMHSQEV--RHHRFCLRLMLKNPDNHALCVLNGHNA 744

Query:   614 TMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNN 673
              +    +   R+Y++A++  P+ PL NLC  T  I++A    +  +H  + QG +FL   
Sbjct:   745 FVSGSFKHVIRQYVQAFRTHPQEPLYNLCAKT-FIHMASQKYVFKRHALIVQGFSFLNRY 803

Query:   674 LRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSD 733
             L L    QE  YN+ RA H +GL  LA  YY+K L +       P  P  +E  +    D
Sbjct:   804 LSLRGPCQETFYNLGRALHQLGLQHLAIHYYQKALEL-------P--PLVVEGIEIDQID 854

Query:   734 LRREAAYNLHLIYKKSGAVDLARQVLRDHCT 764
             LRR+ AYNL LIY+ SG   +A+++L  +C+
Sbjct:   855 LRRDIAYNLSLIYQNSGNTGMAQKLLFTYCS 885

GO:0000127 "transcription factor TFIIIC complex" evidence=IEA

UNIPROTKB|E2QYG3 GTF3C3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 282 (104.3 bits), Expect = 1.3e-37, Sum P(3) = 1.3e-37
 Identities = 73/271 (26%), Positives = 137/271 (50%)

Query:   497 LIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKE---ELYFLGAQIPCNTTDPKLW 553
             L++     L  L R+++A  +++  L+  Y  F  +K+   EL + G        + +  
Sbjct:   625 LLLKAIYCLCDLSRFQEAELLVDSSLE--YYSFYDDKQKRKELEYFGLSAAILDKNFRKA 682

Query:   554 FDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQF 613
             ++ +R MV  + ++   WN + ++    +++  +H +    +  K  +     +++GH  
Sbjct:   683 YNYIRVMVMENVNKPQLWNIFNQVTMHSQEV--RHHRFCLRLMLKNPENHALCVLNGHNA 740

Query:   614 TMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNN 673
              +    + A  +Y++A++  P  PL +LC+G   I++A    +  +H    QG +FL   
Sbjct:   741 FVSGSFKHALGQYVQAFRTHPHEPLYSLCIGLTFIHMASQKYVLRRHALTVQGFSFLNRY 800

Query:   674 LRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSD 733
             L +    QE+ YN+ R  H +GL+ LA  YY+K L     D  +P  P  +E  +    D
Sbjct:   801 LSIRGPCQESFYNLGRGLHQLGLIHLAIHYYQKAL-----D--LP--PLVVEGMEVDQLD 851

Query:   734 LRREAAYNLHLIYKKSGAVDLARQVLRDHCT 764
             LRR+ AYNL LIY+ SG + +A+++L  +CT
Sbjct:   852 LRRDIAYNLSLIYQSSGNIGMAQKLLYTYCT 882

GO:0000127 "transcription factor TFIIIC complex" evidence=IEA

UNIPROTKB|Q9Y5Q9 GTF3C3 "General transcription factor 3C polypeptide 3" [Homo sapiens (taxid:9606)]

 Score = 272 (100.8 bits), Expect = 6.9e-37, Sum P(2) = 6.9e-37
 Identities = 68/271 (25%), Positives = 135/271 (49%)

Query:   497 LIIDLCKTLASLHRYEDAIKIINLILKLGYGKFP--VEKEELYFLGAQIPCNTTDPKLWF 554
             L++    +L  L R+++A  +++  L+  Y  +    +++EL + G        + +  +
Sbjct:   628 LLLKAIYSLCDLSRFQEAELLVDSSLEY-YSFYDDRQKRKELEYFGLSAAILDKNFRKAY 686

Query:   555 DGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFT 614
             + +R MV  + ++   WN + ++    + +  +H +    +  K  +     +++GH   
Sbjct:   687 NYIRIMVMENVNKPQLWNIFNQVTMHSQDV--RHHRFCLRLMLKNPENHALCVLNGHNAF 744

Query:   615 MISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNL 674
             +    + A  +Y++A++  P+ PL + C+G   I++A    +  +H  + QG +FL   L
Sbjct:   745 VSGSFKHALGQYVQAFRTHPDEPLYSFCIGLTFIHMASQKYVLRRHALIVQGFSFLNRYL 804

Query:   675 RLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFP-DHMEDWKPGHSD 733
              L    QE+ YN+ R  H +GL+ LA  YY+K L +     ++ G   D +        D
Sbjct:   805 SLRGPCQESFYNLGRGLHQLGLIHLAIHYYQKALEL--PPLVVEGIELDQL--------D 854

Query:   734 LRREAAYNLHLIYKKSGAVDLARQVLRDHCT 764
             LRR+ AYNL LIY+ SG   +A+ +L  +C+
Sbjct:   855 LRRDIAYNLSLIYQSSGNTGMAQTLLYTYCS 885

GO:0006351 "transcription, DNA-dependent" evidence=IC

GO:0000127 "transcription factor TFIIIC complex" evidence=IDA

GO:0003677 "DNA binding" evidence=IC

GO:0006383 "transcription from RNA polymerase III promoter" evidence=IC;TAS

GO:0042791 "5S class rRNA transcription from RNA polymerase III type 1 promoter" evidence=IC

GO:0042797 "tRNA transcription from RNA polymerase III promoter" evidence=IC

GO:0005654 "nucleoplasm" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

POMBASE|SPCC16C4.14c sfc4 "transcription factor TFIIIC complex subunit Sfc4" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 206 (77.6 bits), Expect = 2.2e-27, Sum P(3) = 2.2e-27
 Identities = 59/168 (35%), Positives = 81/168 (48%)

Query:   606 IIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQ 665
             +++ GH          A   Y  A+ + P+ P+ NL +G A ++ A+     N+H  + Q
Sbjct:   844 VLLYGHIMARNRSWIPAINYYSRAFAINPDCPITNLSLGLAYLHRAMQRLSDNRHYQILQ 903

Query:   666 GLAFLYN--NLRLAEN---SQEALYNIARAYHHVGLVSLAASYYEKVLA---MYQKDCII 717
             G  FLY   +LR+ E     QEALYN+ +AYH +GL   A  YYE VL    M Q D + 
Sbjct:   904 GFTFLYRYYDLRVNEGLGEKQEALYNLGKAYHFIGLEHYAVKYYEAVLGLSPMSQGDKMT 963

Query:   718 PGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHCTF 765
                    E       D   EAAYNL LIY  SG + LA Q+   +  F
Sbjct:   964 SS-----ESTVSTTYDFGFEAAYNLRLIYICSGNIKLAFQISSKYLIF 1006

GO:0000127 "transcription factor TFIIIC complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006384 "transcription initiation from RNA polymerase III promoter" evidence=IDA

GO:0000995 "core RNA polymerase III binding transcription factor activity" evidence=IDA

GO:0043035 "chromatin insulator sequence binding" evidence=IDA

ZFIN|ZDB-GENE-040914-80 gtf3c3 "general transcription factor IIIC, polypeptide 3" [Danio rerio (taxid:7955)]

 Score = 293 (108.2 bits), Expect = 3.5e-26, Sum P(2) = 3.5e-26
 Identities = 74/257 (28%), Positives = 131/257 (50%)

Query:   510 RYEDAIKIINLILKLGYGKFP--VEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHR 567
             R+ +A  +++  L+  Y  +   V+++EL +LG        + +  ++ +R M+     R
Sbjct:    89 RFAEAELLVDSTLEY-YSFYDDRVKRKELEYLGLSAAFLDHNFRTAYNYIRLMLMDSVER 147

Query:   568 LTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYL 627
                WN + ++    +   ++H +    +  K+ D     +++GH   +    + A  +Y+
Sbjct:   148 PQLWNVFNQITLHSQD--ARHHRFCLRLMLKHPDNHALYLLNGHTSLVSGTFKHALGQYM 205

Query:   628 EAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNI 687
             +A++  P++PL +L +G    ++A    +  +H    QG +FL+  + L    QE+LYN+
Sbjct:   206 QAFRNEPDHPLHSLAIGLTFFHMACQKFVMKRHSLTVQGFSFLWRYVDLRGQCQESLYNL 265

Query:   688 ARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYK 747
              RA H +GL  LA  YYEK L +       P  P  ME  +    DLRRE AYNL LIY+
Sbjct:   266 GRALHQLGLTHLAIHYYEKALTL-------P--PLKMEGIEDDQVDLRREIAYNLSLIYQ 316

Query:   748 KSGAVDLARQVLRDHCT 764
              SG  D+AR ++  +CT
Sbjct:   317 SSGNKDMARHIIYTYCT 333

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: OsI_35748 Putative uncharacterized protein (931 aa) (Oryza sativa Indica)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	765
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-15
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-13
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	5e-11
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-07
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-05
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	5e-05
pfam09295	395	pfam09295, ChAPs, ChAPs (Chs5p-Arf1p-binding prote	5e-05
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	5e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-04
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	8e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.001
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.001
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.002
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.002
TIGR03939	800	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g	0.002
PRK11788	389	PRK11788, PRK11788, tetratricopeptide repeat prote	0.003

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 80.1 bits (198), Expect = 2e-15
 Identities = 71/346 (20%), Positives = 132/346 (38%), Gaps = 52/346 (15%)

Query: 100 LHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCY--WLAACYKQK 157
              + G   EAI+ L    +L+ EL  +  +L L +   G   KA+           KQ 
Sbjct: 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEK---KQP 462

Query: 158 DS-SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVY 216
           D+ SL  L+    + +GD   A     +A+  +P+ F    +LA + ++ GN   A   +
Sbjct: 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRF 522

Query: 217 RQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM 276
            +++ + P+N+ A+   A LY ++G  E +V  LE   + +P E                
Sbjct: 523 EKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQE---------------- 566

Query: 277 NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHA 336
                                   +   +     ++  G   KA  +L     +   D  
Sbjct: 567 ------------------------IEPALALAQYYLGKGQLKKALAILNEAA-DAAPDSP 601

Query: 337 ESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFY 396
           E+   +          + A+  +  L A     +     L +A+    +K   K+I    
Sbjct: 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQP--DSALALLLLADAYAVMKNYAKAITSLK 659

Query: 397 KALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNS 442
           +AL++  DN +A++ LA LLL   + E A  +     SL+ ++  +
Sbjct: 660 RALELKPDNTEAQIGLAQLLLAAKRTESAKKIAK---SLQKQHPKA 702

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 72.0 bits (177), Expect = 6e-13
 Identities = 82/395 (20%), Positives = 144/395 (36%), Gaps = 52/395 (13%)

Query: 76  KRGRPEGSKK------KVCPE-IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSY 128
           + G P+ + +       + P+ +R +L  A L+   G  EEA++ L +   L  +     
Sbjct: 511 QEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPA 570

Query: 129 HILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA 188
             L   +   G   KA+     AA         W ++    +  GD   A+S   + +  
Sbjct: 571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL 630

Query: 189 DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVD 248
            P+       LA  Y  + N+ +A    ++ ++L P+N EA    A+L   + + ES+  
Sbjct: 631 QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK 690

Query: 249 ILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAG 308
           I +   K HP  A  G        L Q +    +  + + +     S   + L       
Sbjct: 691 IAKSLQKQHPKAA-LGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLH------ 743

Query: 309 ICHIQLGNTDKAEILLTAIHWENVSDHAESI---NEIADLFKNRELYSTALKYYHML--- 362
                L + + AE + T   W  +  H         +A+L+  ++ Y  A+K+Y  +   
Sbjct: 744 --RALLASGNTAEAVKTLEAW--LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKK 799

Query: 363 -EANAGVHN---------DGCLHLKIAECSLAL------------------KEREKSIIY 394
              NA V N              L+ AE +L L                   E ++++  
Sbjct: 800 APDNAVVLNNLAWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPL 859

Query: 395 FYKALQILEDNIDARLTLASLLLEDAKDEEAISLL 429
             KA+ I  +    R  LA  LL   +  EA   L
Sbjct: 860 LRKAVNIAPEAAAIRYHLALALLATGRKAEARKEL 894

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 65.9 bits (161), Expect = 5e-11
 Identities = 70/385 (18%), Positives = 135/385 (35%), Gaps = 63/385 (16%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
             L  +LG  E A++   + I L          L  +    G   +A       A  K+ 
Sbjct: 200 GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEK--HADALLKKA 257

Query: 158 DSSLWKLIFPWLIE--QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADV 215
            +S        L++  + +   A   L +A+K+ P          +   +LGN ++A   
Sbjct: 258 PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQY 317

Query: 216 YRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQ 275
             Q+++  P + +A ++ A +  + G+++ ++  L   L   P +     + LL    + 
Sbjct: 318 LNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDP--AALSLLGEAYLA 375

Query: 276 MNAYDRVLKHIE-----------------------------------LVDLVYYSGK-EL 299
           +  +++  +++                                       L    G+ +L
Sbjct: 376 LGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADL 435

Query: 300 LLALKIKAGICHIQLGNTDKAEILLTAIHWE-NVSDHAESINEIADLFKNRELYSTALKY 358
           LL L       +++ G  DKA  L  A   E    D+A   N +  ++  +   + A + 
Sbjct: 436 LLILS------YLRSGQFDKA--LAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREA 487

Query: 359 YHM-LEANAG----VHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLA 413
           +   L           N       +A   +     + +I  F K L I   N+ A L LA
Sbjct: 488 FEKALSIEPDFFPAAAN-------LARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALA 540

Query: 414 SLLLEDAKDEEAISLLTPPMSLENK 438
            L L    +EEA++ L     L  +
Sbjct: 541 GLYLRTGNEEEAVAWLEKAAELNPQ 565

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 55.1 bits (133), Expect = 1e-07
 Identities = 52/254 (20%), Positives = 93/254 (36%), Gaps = 43/254 (16%)

Query: 178 AMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLY 237
           A     +A+  DP     K  LA L +    F  A  +  +++   P N++AL +   L 
Sbjct: 144 AQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLL 203

Query: 238 QKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGK 297
              G IE ++      +   P      V+  LA++L++   ++   KH    D +     
Sbjct: 204 LSLGNIELALAAYRKAIALRPNNIA--VLLALATILIEAGEFEEAEKH---ADALLKKAP 258

Query: 298 ELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALK 357
              LA  +KA +   Q  N + A             +  +   + A  +    L + A +
Sbjct: 259 NSPLAHYLKALV-DFQKKNYEDA------------RETLQDALKSAPEYLPALLLAGASE 305

Query: 358 YYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLL 417
           Y                          L   E++  Y  + L+   ++  AR  LAS+ L
Sbjct: 306 YQ-------------------------LGNLEQAYQYLNQILKYAPNSHQARRLLASIQL 340

Query: 418 EDAKDEEAISLLTP 431
              + +EAI+ L+P
Sbjct: 341 RLGRVDEAIATLSP 354

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 24/91 (26%), Positives = 48/91 (52%)

Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228
             + GD   A+    +A++ DP++    ++LA+ Y +LG ++ A + Y + ++L P+N +
Sbjct: 10  YYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAK 69

Query: 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPT 259
           A       Y K G+ E +++  E  L+  P 
Sbjct: 70  AYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 52.0 bits (125), Expect = 1e-06
 Identities = 60/277 (21%), Positives = 95/277 (34%), Gaps = 71/277 (25%)

Query: 13  AERKRKAALQNHNDCTEGEAKKKKMAMESQDNDDERRRFEAIIFGFGSRKRSREASKKYP 72
           A    K AL+   D TE  A+     +       E     A        K ++   K++P
Sbjct: 654 AITSLKRALELKPDNTE--AQIGLAQLLLAAKRTE----SAK-------KIAKSLQKQHP 700

Query: 73  SLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHI-- 130
                                + GD  L+     Y  AI    + ++     P+S +   
Sbjct: 701 KA--------------ALGFELEGD--LYLRQKDYPAAIQAYRKALKRA---PSSQNAIK 741

Query: 131 LGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADP 190
           L     A GNTA+A+                 K +  WL                 K  P
Sbjct: 742 LHRALLASGNTAEAV-----------------KTLEAWL-----------------KTHP 767

Query: 191 NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDIL 250
           ND  L+  LA LY+   ++ +A   Y+ +V+  P+N   L   A LY +      +++  
Sbjct: 768 NDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPR-ALEYA 826

Query: 251 EDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIE 287
           E  LK  P      ++D L  +LV+    DR L  + 
Sbjct: 827 ERALKLAPNIPA--ILDTLGWLLVEKGEADRALPLLR 861

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 91/405 (22%), Positives = 154/405 (38%), Gaps = 61/405 (15%)

Query: 94  MLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAAC 153
            LG A L  A  R++EA +++ EV+  +    ++  + G +  +LGN   A+  Y  A  
Sbjct: 162 KLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIA 221

Query: 154 YKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAA 213
            +  + ++   +   LIE G+   A       +K  PN     +  A +  +  N++ A 
Sbjct: 222 LRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDAR 281

Query: 214 DVYRQMVQLCPENIEALKM-GAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASM 272
           +  +  ++  PE + AL + GA  YQ  G +E +   L   LK  P         LLAS+
Sbjct: 282 ETLQDALKSAPEYLPALLLAGASEYQL-GNLEQAYQYLNQILKYAPN--SHQARRLLASI 338

Query: 273 LVQMNAYDRVLKHIE-LVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILL---TAIH 328
            +++   D  +  +   + L         L+L    G  ++ LG+ +KA   L   T + 
Sbjct: 339 QLRLGRVDEAIATLSPALGLD--PDDPAALSL---LGEAYLALGDFEKAAEYLAKATELD 393

Query: 329 WENVSDHAE------SINE----IADLFK-----------NRELYSTALKYYHMLEANAG 367
            EN +   +      S  +    IADL             +  L  + L+     +A A 
Sbjct: 394 PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAA 453

Query: 368 VH-------NDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLA------- 413
                    ++  LH  +    L   +  K+   F KAL I  D   A   LA       
Sbjct: 454 AKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEG 513

Query: 414 ----------SLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAW 448
                      +L  D K+  AI  L     L  +  N ++  AW
Sbjct: 514 NPDDAIQRFEKVLTIDPKNLRAILALA---GLYLRTGNEEEAVAW 555

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 21/100 (21%), Positives = 47/100 (47%)

Query: 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEA 185
            +   LG ++  LG+  +A+  Y  A      ++  +  +     + G    A+    +A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 186 VKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE 225
           ++ DP++ K  ++L   Y +LG ++ A + Y + ++L P 
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 43/192 (22%)

Query: 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA 229
           +EQGD   A   L +A++ DP+D+     LA  Y +LG  ++A D +R+ + L P N + 
Sbjct: 42  LEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDV 101

Query: 230 L-KMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIEL 288
           L   G  L Q+ G+ E                                 A  +  + IE 
Sbjct: 102 LNNYGTFLCQQ-GKYEQ--------------------------------AMQQFEQAIE- 127

Query: 289 VDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLT-AIHWENVSDHAESINEIADLFK 347
            D +Y      L      AG+C ++ G+ DKAE  LT A+  +      ES+ E+A+L+ 
Sbjct: 128 -DPLYPQPARSLE----NAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYY 180

Query: 348 NRELYSTALKYY 359
            R  Y  A  Y 
Sbjct: 181 LRGQYKDARAYL 192

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|204190 pfam09295, ChAPs, ChAPs (Chs5p-Arf1p-binding proteins)

 Score = 46.2 bits (110), Expect = 5e-05
 Identities = 47/203 (23%), Positives = 76/203 (37%), Gaps = 48/203 (23%)

Query: 37  MAMESQDNDDERRRF-EAIIFG-FGSRKRSREAS---KKYPSLKKRGRPEGSKKKVCPEI 91
           M  +   +D E +   E  I   F + +    A+   K +  L  RG   GS      EI
Sbjct: 106 MYADDNADDGEIQNLVETRILNPFTNGELEDVANMFLKAFELLFFRGPQLGS----PSEI 161

Query: 92  R------RMLGDASLHYA--LGRYEEAISVLHEVIRLEEELPNSYHILG----------- 132
           +        L +  L Y     RY+ A+++L    +L EE P    +L            
Sbjct: 162 QVPTLVNNYLVEGLLKYVRLTKRYDRALNLLE---KLREEEPEVVSLLARVLLLMDEEID 218

Query: 133 ---LVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKAD 189
              L+HDAL                   D  L  L   +L+ +     A+ C   AV + 
Sbjct: 219 AVKLMHDALQEN--------------PMDYELLCLQAEFLLSKKKDELALECAKRAVNSA 264

Query: 190 PNDFKLKFHLASLYVELGNFQRA 212
           P++FK    L  +Y++L +++ A
Sbjct: 265 PSEFKTWALLVKVYIKLEDWENA 287

ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they form also interactions with each other. Length = 395

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 46.1 bits (109), Expect = 5e-05
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 4/120 (3%)

Query: 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI-E 228
           +E GD   A     +A+K +  D  + +H A L+   G F +A   Y++ + L P+ I  
Sbjct: 376 LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435

Query: 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIEL 288
            +++G   Y K G I SS+       K  P   D  V +    +L+  N +D  ++  + 
Sbjct: 436 HIQLGVTQY-KEGSIASSMATFRRCKKNFPEAPD--VYNYYGELLLDQNKFDEAIEKFDT 492

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 60/254 (23%), Positives = 102/254 (40%), Gaps = 42/254 (16%)

Query: 172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK 231
           +     A+  L  A++ DPND + +F L  +Y+ LG++  A    R+ + L     + L 
Sbjct: 35  KNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLP 94

Query: 232 MGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDL 291
           + A+ Y   G+ +  +D L           D G  +LLA   ++  AY   L  +EL   
Sbjct: 95  LLARAYLLQGKFQQVLDELPGK----TLLDDEGAAELLA---LRGLAYLG-LGQLEL--- 143

Query: 292 VYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNREL 351
              + K    AL I     + +LG    A++ L                      + R L
Sbjct: 144 ---AQKSYEQALAIDPRSLYAKLG---LAQLALAE----------------NRFDEARAL 181

Query: 352 YSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLT 411
                     L A+ G  +     L   +  L+L   E ++  + KA+ +  +NI   L 
Sbjct: 182 IDEV------LTADPGNVD---ALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLA 232

Query: 412 LASLLLEDAKDEEA 425
           LA++L+E  + EEA
Sbjct: 233 LATILIEAGEFEEA 246

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 21/92 (22%), Positives = 43/92 (46%)

Query: 100 LHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS 159
           L+Y LG Y+EA+    + + L+ +  ++Y+ L   +  LG   +A+  Y  A      ++
Sbjct: 9   LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68

Query: 160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPN 191
             +  +     + G    A+    +A++ DPN
Sbjct: 69  KAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 197 FHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKG 256
            +L +LY +LG++  A + Y + ++L P+N +A    A  Y K G+ E +++  E  L+ 
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 257 HPTEADFGVIDLLASMLVQMNAYDRVLKHIELV 289
            P  A       L     ++  Y+  L+  E  
Sbjct: 64  DPDNAK--AYYNLGLAYYKLGKYEEALEAYEKA 94

Length = 100

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 41.7 bits (98), Expect = 8e-04
 Identities = 33/143 (23%), Positives = 58/143 (40%)

Query: 100 LHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS 159
                G + EA+SVL +  RL      ++++LG   D LG   +A   Y  A      + 
Sbjct: 109 NQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP 168

Query: 160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQM 219
           S+   +   L+ +GD   A + L  A  +   D +++ +LA +    G+F+ A D+  Q 
Sbjct: 169 SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228

Query: 220 VQLCPENIEALKMGAKLYQKSGQ 242
           +           + A   Q    
Sbjct: 229 LLSEQAANNVAALRAAASQSGAW 251

Length = 257

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLA 151
           A+ +Y LG+YEEA+    + + L+ +   +Y+ LGL +  LG   +A+  Y  A
Sbjct: 41  AAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94

Length = 100

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 12/58 (20%), Positives = 22/58 (37%)

Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN 226
            +  GD   A++ L  A+   P   +    L    +  G    AA + R  +   P++
Sbjct: 7   ALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64

Length = 65

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 339 INEIADLFKNRELYSTALKYYHM-LEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYK 397
           +N     +K  + Y  AL+YY   LE +    ++   +  +A     L + E+++  + K
Sbjct: 4   LNLGNLYYKLGD-YDEALEYYEKALELD---PDNADAYYNLAAAYYKLGKYEEALEDYEK 59

Query: 398 ALQILEDNIDARLTLASLLLEDAKDEEAISLL 429
           AL++  DN  A   L     +  K EEA+   
Sbjct: 60  ALELDPDNAKAYYNLGLAYYKLGKYEEALEAY 91

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG-NFQRAADVYRQMVQLCP 224
           L + GD   A+    +A++ DP++ +  ++LA  Y++LG +++ A +   + ++L P
Sbjct: 13  LFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 48/208 (23%), Positives = 79/208 (37%), Gaps = 29/208 (13%)

Query: 41  SQDNDDERRRFEAIIFGFGSRKRSREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASL 100
            Q N   RR     +     RKR  E  ++Y SL+  G+P      + P  +  + DA L
Sbjct: 268 PQANPLYRRARIDRLGALLVRKRYAEVIREYESLEAEGQP------LPPYAQEAVADAYL 321

Query: 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSS 160
             AL + E+A+ +  E+   E    N    + L + A     +      L    K+  + 
Sbjct: 322 --ALRQPEKALPIYRELAAAEPADNNLELTIKLFY-AYLEAEQYDEAQALLDGLKES-TP 377

Query: 161 LWKLIF---------PW----------LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLAS 201
             +  F          +          L  +GD   A + L E +   P +  L+  LA 
Sbjct: 378 PQRWDFTRSTKAPNDDYLEAQQLLVLSLAWRGDLPEAEARLDELLATAPGNPWLRLALAD 437

Query: 202 LYVELGNFQRAADVYRQMVQLCPENIEA 229
           +Y   G  +RA   Y+Q   L P+++ A
Sbjct: 438 VYRARGWPRRAEQEYKQAESLDPDSLSA 465

Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800

>gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional

 Score = 40.6 bits (96), Expect = 0.003
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 4/102 (3%)

Query: 170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI-E 228
           + +GD   A + L +A+ ADP   +    L  L +  G++  A +   ++ +  PE + E
Sbjct: 191 LARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE 250

Query: 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLA 270
            L    + YQ  G     ++ L   L+ +P      ++  LA
Sbjct: 251 VLPKLMECYQALGDEAEGLEFLRRALEEYPGAD---LLLALA 289

Length = 389

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	765
KOG2076	895	consensus RNA polymerase III transcription factor	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	100.0
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	100.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	100.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	100.0
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.97
PRK14574	822	hmsH outer membrane protein; Provisional	99.97
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.97
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.97
KOG2076	895	consensus RNA polymerase III transcription factor	99.97
PLN03077	857	Protein ECB2; Provisional	99.96
KOG2003	840	consensus TPR repeat-containing protein [General f	99.96
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.95
KOG1126	638	consensus DNA-binding cell division cycle control	99.95
PLN03218	1060	maturation of RBCL 1; Provisional	99.95
PRK14574	822	hmsH outer membrane protein; Provisional	99.95
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.95
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.95
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.94
PLN03218	1060	maturation of RBCL 1; Provisional	99.94
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.94
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.94
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.94
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.94
KOG1126	638	consensus DNA-binding cell division cycle control	99.93
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.93
KOG2003	840	consensus TPR repeat-containing protein [General f	99.93
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.93
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.93
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.93
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.92
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.92
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.91
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.91
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.9
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.88
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.88
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.88
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.88
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.87
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.87
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.87
PRK12370	553	invasion protein regulator; Provisional	99.86
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.86
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.86
PRK12370	553	invasion protein regulator; Provisional	99.85
KOG1129	478	consensus TPR repeat-containing protein [General f	99.85
KOG1129	478	consensus TPR repeat-containing protein [General f	99.85
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.84
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.84
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.84
PRK11189	296	lipoprotein NlpI; Provisional	99.83
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.83
KOG1125	579	consensus TPR repeat-containing protein [General f	99.82
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.81
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.81
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.81
PRK11189	296	lipoprotein NlpI; Provisional	99.81
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.8
KOG1125	579	consensus TPR repeat-containing protein [General f	99.79
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.78
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.78
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.77
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.77
PLN02789	320	farnesyltranstransferase	99.75
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.75
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.74
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.74
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.74
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.73
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.72
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.72
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.72
PLN02789	320	farnesyltranstransferase	99.72
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.7
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.7
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.69
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.66
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.64
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.63
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.61
PRK15359	144	type III secretion system chaperone protein SscB;	99.61
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.6
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.58
PRK15359	144	type III secretion system chaperone protein SscB;	99.57
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.56
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.55
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.52
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.51
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.5
PRK04841	903	transcriptional regulator MalT; Provisional	99.49
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.49
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.47
PRK04841	903	transcriptional regulator MalT; Provisional	99.47
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.45
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.44
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.43
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.42
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.41
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.39
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.38
KOG0553	304	consensus TPR repeat-containing protein [General f	99.38
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.37
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.35
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.33
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.33
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.31
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.31
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.3
KOG0553	304	consensus TPR repeat-containing protein [General f	99.29
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.29
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.25
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.24
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.23
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	99.2
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.2
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.18
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.16
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.15
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	99.12
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.12
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.09
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.07
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.07
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.06
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.06
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.04
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.03
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.03
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.02
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.02
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.99
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.99
PRK11906	458	transcriptional regulator; Provisional	98.97
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.97
PRK11906	458	transcriptional regulator; Provisional	98.96
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.96
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.94
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.94
PRK15331	165	chaperone protein SicA; Provisional	98.94
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.93
KOG2471	696	consensus TPR repeat-containing protein [General f	98.93
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.93
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.93
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.92
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.91
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.91
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.91
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.91
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.91
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.91
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.9
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.89
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.89
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.87
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.87
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.87
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.87
PRK15331	165	chaperone protein SicA; Provisional	98.86
PRK10803	263	tol-pal system protein YbgF; Provisional	98.86
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.85
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.84
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.83
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.83
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.82
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.81
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.8
KOG2300	629	consensus Uncharacterized conserved protein [Funct	98.8
PRK10803	263	tol-pal system protein YbgF; Provisional	98.77
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.76
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.76
PF12688	120	TPR_5: Tetratrico peptide repeat	98.74
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.73
KOG2471	696	consensus TPR repeat-containing protein [General f	98.73
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.71
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.71
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.7
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.69
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.69
PF13512	142	TPR_18: Tetratricopeptide repeat	98.67
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.66
KOG4234	271	consensus TPR repeat-containing protein [General f	98.6
PF12688	120	TPR_5: Tetratrico peptide repeat	98.6
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.58
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.57
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.54
PF13371	73	TPR_9: Tetratricopeptide repeat	98.51
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.51
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.51
PF13371	73	TPR_9: Tetratricopeptide repeat	98.5
KOG1258	577	consensus mRNA processing protein [RNA processing	98.49
PF13512	142	TPR_18: Tetratricopeptide repeat	98.47
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.43
KOG4507	886	consensus Uncharacterized conserved protein, conta	98.4
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.39
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.38
KOG4234	271	consensus TPR repeat-containing protein [General f	98.38
KOG1258	577	consensus mRNA processing protein [RNA processing	98.38
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.31
KOG4555	175	consensus TPR repeat-containing protein [Function	98.28
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.26
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.25
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.22
KOG4507	886	consensus Uncharacterized conserved protein, conta	98.21
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.18
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.17
KOG4555	175	consensus TPR repeat-containing protein [Function	98.15
KOG1586	288	consensus Protein required for fusion of vesicles	98.11
KOG1586	288	consensus Protein required for fusion of vesicles	98.11
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.08
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.08
KOG1585	308	consensus Protein required for fusion of vesicles	98.06
KOG1585	308	consensus Protein required for fusion of vesicles	98.03
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.03
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.01
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.97
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.95
PF13428	44	TPR_14: Tetratricopeptide repeat	97.95
PF13428	44	TPR_14: Tetratricopeptide repeat	97.95
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.95
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.91
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.91
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.9
PF13431	34	TPR_17: Tetratricopeptide repeat	97.87
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.86
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.84
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.84
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.83
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.83
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.82
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.79
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.79
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.77
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.72
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.71
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.69
PF13431	34	TPR_17: Tetratricopeptide repeat	97.68
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.65
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.65
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.64
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.63
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.6
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.59
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.58
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.53
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.48
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	97.48
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.47
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.43
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.42
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.4
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.39
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.35
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.34
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.32
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.31
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.29
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.29
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	97.28
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.28
PRK11619	644	lytic murein transglycosylase; Provisional	97.26
KOG1463	411	consensus 26S proteasome regulatory complex, subun	97.24
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.19
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.12
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.12
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	97.05
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.05
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.04
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.0
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.98
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.94
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.92
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.92
COG5159	421	RPN6 26S proteasome regulatory complex component [	96.89
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.83
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.76
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.75
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.71
PRK11619	644	lytic murein transglycosylase; Provisional	96.7
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	96.63
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.63
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.57
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.55
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.5
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.47
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.45
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.45
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.38
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.38
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.32
COG1747	711	Uncharacterized N-terminal domain of the transcrip	96.31
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	96.15
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.14
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.13
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.97
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.97
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.94
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.87
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.85
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.83
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.77
PRK10941	269	hypothetical protein; Provisional	95.74
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.74
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.73
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.63
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.54
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.47
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.36
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.29
PRK10941	269	hypothetical protein; Provisional	95.23
KOG1310	758	consensus WD40 repeat protein [General function pr	95.0
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	94.9
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.83
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.81
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.78
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.73
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	94.71
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	94.7
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.55
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.44
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.35
COG5159	421	RPN6 26S proteasome regulatory complex component [	94.22
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.22
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.18
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.05
KOG3364	149	consensus Membrane protein involved in organellar	93.88
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.87
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.72
KOG4814	872	consensus Uncharacterized conserved protein [Funct	93.68
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.65
KOG3364	149	consensus Membrane protein involved in organellar	93.54
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.52
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.25
KOG2422	665	consensus Uncharacterized conserved protein [Funct	93.19
KOG1463	411	consensus 26S proteasome regulatory complex, subun	93.18
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.05
KOG3783	546	consensus Uncharacterized conserved protein [Funct	92.97
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.85
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	92.68
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.64
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	92.54
COG5191	435	Uncharacterized conserved protein, contains HAT (H	92.38
KOG1310	758	consensus WD40 repeat protein [General function pr	92.12
KOG2422	665	consensus Uncharacterized conserved protein [Funct	92.06
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	91.92
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.67
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	91.4
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.4
COG5191	435	Uncharacterized conserved protein, contains HAT (H	91.36
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	90.63
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.54
COG2912	269	Uncharacterized conserved protein [Function unknow	90.23
KOG2581	493	consensus 26S proteasome regulatory complex, subun	90.22
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.21
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	89.99
PRK12798	421	chemotaxis protein; Reviewed	89.84
COG3629	280	DnrI DNA-binding transcriptional activator of the	89.56
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.55
COG1747	711	Uncharacterized N-terminal domain of the transcrip	89.41
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	89.4
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	89.14
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	88.83
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.65
KOG2062	929	consensus 26S proteasome regulatory complex, subun	88.51
COG3629	280	DnrI DNA-binding transcriptional activator of the	88.41
PRK12798	421	chemotaxis protein; Reviewed	88.26
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	88.02
COG2912	269	Uncharacterized conserved protein [Function unknow	87.97
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	87.89
KOG0529	421	consensus Protein geranylgeranyltransferase type I	87.56
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	86.7
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	86.64
KOG2062	929	consensus 26S proteasome regulatory complex, subun	85.92
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	85.84
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	85.63
PF13041	50	PPR_2: PPR repeat family	84.71
PF13041	50	PPR_2: PPR repeat family	84.4
COG5187	412	RPN7 26S proteasome regulatory complex component,	81.75
PF12854	34	PPR_1: PPR repeat	81.62
COG4455	273	ImpE Protein of avirulence locus involved in tempe	81.35
KOG0529	421	consensus Protein geranylgeranyltransferase type I	81.25
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	81.23
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	80.69
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	80.64
PF12854	34	PPR_1: PPR repeat	80.34

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=100.00  E-value=2.7e-67  Score=536.48  Aligned_cols=677  Identities=32%  Similarity=0.482  Sum_probs=574.9

Q ss_pred             ccCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 004249           75 KKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACY  154 (765)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  154 (765)
                      +++++...+.+.++|++..++++|+.++..|++++|..++.++++.+|.++.+|+.||.+|..+|+.++++.++-.|..+
T Consensus       123 ~k~~~~~r~~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL  202 (895)
T KOG2076|consen  123 KKRGRRSRGKSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL  202 (895)
T ss_pred             CccCCCCCcccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            45555666778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-----HHH
Q 004249          155 KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN-----IEA  229 (765)
Q Consensus       155 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~  229 (765)
                      +|.+.+.|..++....++|++.+|.-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|..     ...
T Consensus       203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~  282 (895)
T KOG2076|consen  203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL  282 (895)
T ss_pred             CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999933     223


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH------------------
Q 004249          230 LKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDL------------------  291 (765)
Q Consensus       230 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------  291 (765)
                      ....+..+...++-+.|++.++.++....+......++.++.++.....++.|...+.....                  
T Consensus       283 i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~  362 (895)
T KOG2076|consen  283 IRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE  362 (895)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence            44557888888888999999999998554444444678999999999999999999887766                  


Q ss_pred             ----HhcCCCCcc--HHH-HHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHh
Q 004249          292 ----VYYSGKELL--LAL-KIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEA  364 (765)
Q Consensus       292 ----~~~~~~~~~--~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  364 (765)
                          ..+.+...+  ..+ +..++.+.++.++..+++..+...-...+..+++.+..++.++...|++.+|+.+|..+..
T Consensus       363 ~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~  442 (895)
T KOG2076|consen  363 EPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN  442 (895)
T ss_pred             cccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence                111111122  222 3444444455555555555554432223567788999999999999999999999999988


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCccc
Q 004249          365 NAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDK  444 (765)
Q Consensus       365 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  444 (765)
                      .. .-++..+|+.+|.||..+|.+++|+++|++++...|++.+++..|+.++.++|++++|.+.+++....++..   ..
T Consensus       443 ~~-~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~---~e  518 (895)
T KOG2076|consen  443 RE-GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN---AE  518 (895)
T ss_pred             Cc-cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc---hh
Confidence            74 345578999999999999999999999999999999999999999999999999999999999988655432   12


Q ss_pred             chhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhccc---------------------------------------
Q 004249          445 THAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQ---------------------------------------  485 (765)
Q Consensus       445 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l---------------------------------------  485 (765)
                      ...|+.+.++...++.++.+.|+.++.++....++......                                       
T Consensus       519 ~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~  598 (895)
T KOG2076|consen  519 ACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATD  598 (895)
T ss_pred             hccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCc
Confidence            34577788899999999999999999998887776533220                                       


Q ss_pred             ------------------ccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCch-HHHHHHHHhhcccc
Q 004249          486 ------------------EETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVE-KEELYFLGAQIPCN  546 (765)
Q Consensus       486 ------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~~~~  546 (765)
                                        -..+.-.++++.+..+..++.+.+++++|..++..++.....-.+.. ...+..++..+.+.
T Consensus       599 ~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~  678 (895)
T KOG2076|consen  599 DNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLY  678 (895)
T ss_pred             hHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHh
Confidence                              00114456778999999999999999999999999998765432333 44777888889999


Q ss_pred             cCChhhHHHHHHHHHHh-----CCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC-CCchhhhhhhhhhhhhHH
Q 004249          547 TTDPKLWFDGVRFMVKL-----HPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDF-VPPIIISGHQFTMISHHQ  620 (765)
Q Consensus       547 ~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~~g~~~~~~~~~~  620 (765)
                      .+++..|.++++.++..     +|..+..|+....++...++. ....+++.++...+|++ ++...+.|+.++..+.|.
T Consensus       679 ~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~-v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~  757 (895)
T KOG2076|consen  679 ARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQR-VCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFK  757 (895)
T ss_pred             cCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCccCCcceeeeechhHhhccchH
Confidence            99999999999999998     888889999766666666665 35567777777777777 777799999999999999


Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCC--CchHHHhHHHHHHHhchHH
Q 004249          621 DAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAEN--SQEALYNIARAYHHVGLVS  698 (765)
Q Consensus       621 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~  698 (765)
                      .|+.+|.+++..+|++|++++++|.+++++++++...+||.+|.||++|+++|.+++..  .+|+.||+|++||+.|..+
T Consensus       758 ~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~  837 (895)
T KOG2076|consen  758 HALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVH  837 (895)
T ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHH
Confidence            99999999999999999999999999999999999999999999999999999888765  9999999999999999999


Q ss_pred             HHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC
Q 004249          699 LAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHCTF  765 (765)
Q Consensus       699 ~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~k~l~~  765 (765)
                      .|+.+|+|||+++|.....|.         -.+.+++.+|+|||.+||..+||.++|+.+++|||+|
T Consensus       838 LA~~YYekvL~~~p~~~~~~~---------~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl~~  895 (895)
T KOG2076|consen  838 LAVSYYEKVLEVSPKDVTDPK---------EDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKYLVF  895 (895)
T ss_pred             HHHHHHHHHhCCCcccccccc---------CCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhhccC
Confidence            999999999999985421111         1478899999999999999999999999999999997

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=6.2e-51  Score=479.95  Aligned_cols=639  Identities=18%  Similarity=0.150  Sum_probs=434.5

Q ss_pred             HHHHHHhhcCCCcchhhhhccccccccCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHH
Q 004249           50 RFEAIIFGFGSRKRSREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYH  129 (765)
Q Consensus        50 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  129 (765)
                      .+..++..+...|+++++...+..+...       .+.++  ...+..|.+++..|++++|+..|++++..+|....++.
T Consensus       229 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~  299 (899)
T TIGR02917       229 VLLALATILIEAGEFEEAEKHADALLKK-------APNSP--LAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALL  299 (899)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCc--hHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHH
Confidence            3444566666667777666544111110       11111  23344556666677777777777777777776666666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q 004249          130 ILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNF  209 (765)
Q Consensus       130 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  209 (765)
                      .+|.++...|++++|+..+.+++...|.+..++..++.++...|++++|+..+++++...|.++..+..+|.++...|++
T Consensus       300 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  379 (899)
T TIGR02917       300 LAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDF  379 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCH
Confidence            66777777777777777777777666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH--------------------------
Q 004249          210 QRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADF--------------------------  263 (765)
Q Consensus       210 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--------------------------  263 (765)
                      ++|+..|+++++..|++..++..+|.++...|++++|+..+++++...|.....                          
T Consensus       380 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  459 (899)
T TIGR02917       380 EKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEK  459 (899)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            666666666666666666666666666666666666666666666665544331                          


Q ss_pred             ------HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHH
Q 004249          264 ------GVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAE  337 (765)
Q Consensus       264 ------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  337 (765)
                            ..+..+|.++...|++++|+..|++++..    .|....++..++.++...|++++|...+++++... |.+..
T Consensus       460 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~  534 (899)
T TIGR02917       460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI----EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLR  534 (899)
T ss_pred             hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHH
Confidence                  13444555555555555555555555544    34444445555555555555555555555554443 44445


Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004249          338 SINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLL  417 (765)
Q Consensus       338 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  417 (765)
                      ++..++.++...|++++|+.++++++..  .|.+...+..++.++...|++++|+..+++++...|.++.++..++.++.
T Consensus       535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  612 (899)
T TIGR02917       535 AILALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQL  612 (899)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            5555555555555555555555555554  45555555555555555555555555555555555555555555555555


Q ss_pred             HcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHH
Q 004249          418 EDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLL  497 (765)
Q Consensus       418 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~  497 (765)
                      ..|++++|+..++++++..|..            +.++..++.++...|++++|+..+.+++.         ..|++...
T Consensus       613 ~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~  671 (899)
T TIGR02917       613 AAGDLNKAVSSFKKLLALQPDS------------ALALLLLADAYAVMKNYAKAITSLKRALE---------LKPDNTEA  671 (899)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------cCCCCHHH
Confidence            5555555555555555544443            34455566666666666666666666554         45566666


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHH
Q 004249          498 IIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKL  577 (765)
Q Consensus       498 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  577 (765)
                      +..++.++...|++++|..+++.+....    |.++.....++. ++...|++++|+..|++++...|++ ..+..++.+
T Consensus       672 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~  745 (899)
T TIGR02917       672 QIGLAQLLLAAKRTESAKKIAKSLQKQH----PKAALGFELEGD-LYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRA  745 (899)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC----cCChHHHHHHHH-HHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHH
Confidence            6666666666666666666666666655    445555555555 8889999999999999999999988 556667777


Q ss_pred             HhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCcccC
Q 004249          578 VSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQ  657 (765)
Q Consensus       578 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~  657 (765)
                      +...|+. ..+...+.+.+...|+++..+..+|.++...|++++|+..|.++++..|+++.+...+|+++...+.     
T Consensus       746 ~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-----  819 (899)
T TIGR02917       746 LLASGNT-AEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-----  819 (899)
T ss_pred             HHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-----
Confidence            7666654 6788888999999999999999999999999999999999999999999999999999998875442     


Q ss_pred             chhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHHhchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHH
Q 004249          658 NKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRRE  737 (765)
Q Consensus       658 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  737 (765)
                            .+|+..+++...+.|+++.+++++|.++...|++++|+.+|+++++.+|.+                     ++
T Consensus       820 ------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~---------------------~~  872 (899)
T TIGR02917       820 ------PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA---------------------AA  872 (899)
T ss_pred             ------HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------------hH
Confidence                  348899999999999999999999999999999999999999999998843                     78


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 004249          738 AAYNLHLIYKKSGAVDLARQVLRDHCT  764 (765)
Q Consensus       738 a~~nl~~iy~~~g~~~~A~~~l~k~l~  764 (765)
                      +.++++.+|.+.|+++.|++++++.+.
T Consensus       873 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  899 (899)
T TIGR02917       873 IRYHLALALLATGRKAEARKELDKLLN  899 (899)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence            999999999999999999999999873

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=3.1e-49  Score=465.55  Aligned_cols=646  Identities=13%  Similarity=0.094  Sum_probs=465.6

Q ss_pred             HHHHhhcCCCcchhhhhccccccccCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHH
Q 004249           52 EAIIFGFGSRKRSREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHIL  131 (765)
Q Consensus        52 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  131 (765)
                      ..++..+...|++.++...+        ........+.....+...|..+...|++++|+..|++++..+|+++.++..+
T Consensus        94 ~~~a~~~~~~g~~~~a~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  165 (899)
T TIGR02917        94 PLLARAYLLQGKFQQVLDEL--------PGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGL  165 (899)
T ss_pred             HHHHHHHHHCCCHHHHHHhh--------cccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence            33555566666666665544        1111112233445566778889999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q 004249          132 GLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQR  211 (765)
Q Consensus       132 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  211 (765)
                      |.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..|++++..+|.++.++..++.++...|++++
T Consensus       166 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~  245 (899)
T TIGR02917       166 AQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEE  245 (899)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004249          212 AADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDL  291 (765)
Q Consensus       212 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  291 (765)
                      |...++++++..|+++.+++..|.++...|++++|+..++++++..|+...  .+..+|.++...|++++|+..+.+++.
T Consensus       246 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~~~~  323 (899)
T TIGR02917       246 AEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLP--ALLLAGASEYQLGNLEQAYQYLNQILK  323 (899)
T ss_pred             HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchh--HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999988888888899999999999999999999998888765  566888888899999999999998888


Q ss_pred             HhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCC
Q 004249          292 VYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHND  371 (765)
Q Consensus       292 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  371 (765)
                      .    .|........++.++...|++++|+..+..++... +.++..+..+|.++...|++++|+.+|++++..  .|++
T Consensus       324 ~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~  396 (899)
T TIGR02917       324 Y----APNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPEN  396 (899)
T ss_pred             h----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence            7    55566677777888888888888888888876655 666777888888888888888888888888877  7777


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhh
Q 004249          372 GCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLN  451 (765)
Q Consensus       372 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (765)
                      +.++..+|.++...|++++|+..++++++..|........++..+...|++++|+..+++.....|..            
T Consensus       397 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------  464 (899)
T TIGR02917       397 AAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDN------------  464 (899)
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------
Confidence            88888888888888888888888877777776666555556666666666666666665555444433            


Q ss_pred             hHHHHHHHHHHHhcchhHHHHHhhHHHHhhhccc-------------------------ccccChhhHHHHHHHHHHHHH
Q 004249          452 IRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQ-------------------------EETFNHEEHRLLIIDLCKTLA  506 (765)
Q Consensus       452 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l-------------------------~~~~~~~~~~~~~~~l~~~~~  506 (765)
                      +.++..+|.++...|++++|+..+.+++......                         ..+-..|.+..++..++.++.
T Consensus       465 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  544 (899)
T TIGR02917       465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL  544 (899)
T ss_pred             cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            2344445555555555555555554444300000                         000033444555555555555


Q ss_pred             hhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhh
Q 004249          507 SLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFS  586 (765)
Q Consensus       507 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~  586 (765)
                      ..|++++|..++++++...    |.+......++. ++...|++++|+..+++++...|.++..|..++.++...++. +
T Consensus       545 ~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~  618 (899)
T TIGR02917       545 RTGNEEEAVAWLEKAAELN----PQEIEPALALAQ-YYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL-N  618 (899)
T ss_pred             HcCCHHHHHHHHHHHHHhC----ccchhHHHHHHH-HHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH-H
Confidence            5555555555555555544    333333333333 555566666666666666666666666666666655554443 4


Q ss_pred             HHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCcccCchhHHHHHH
Q 004249          587 KHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQG  666 (765)
Q Consensus       587 ~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a  666 (765)
                      .+...+.+.++..|.++..+..+|.++...|++++|+..|.++++.+|+++.....++.++...+          ...+|
T Consensus       619 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~A  688 (899)
T TIGR02917       619 KAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK----------RTESA  688 (899)
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----------CHHHH
Confidence            55555666666666666666666666666666666666666666666666666555555554332          23566


Q ss_pred             HHHHHHhhcccCCCchHHHhHHHHHHHhchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHH
Q 004249          667 LAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIY  746 (765)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy  746 (765)
                      +.++....+..|.++.++..+|.++...|++++|+..|++++...|+                      ..+.++++.+|
T Consensus       689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----------------------~~~~~~l~~~~  746 (899)
T TIGR02917       689 KKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS----------------------SQNAIKLHRAL  746 (899)
T ss_pred             HHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC----------------------chHHHHHHHHH
Confidence            77777777777778888888888888888888888888888888763                      15678899999


Q ss_pred             HhcCCHHHHHHHHHhhcC
Q 004249          747 KKSGAVDLARQVLRDHCT  764 (765)
Q Consensus       747 ~~~g~~~~A~~~l~k~l~  764 (765)
                      ...|++++|.+.+++++.
T Consensus       747 ~~~g~~~~A~~~~~~~l~  764 (899)
T TIGR02917       747 LASGNTAEAVKTLEAWLK  764 (899)
T ss_pred             HHCCCHHHHHHHHHHHHH
Confidence            999999999999988763

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=3.9e-45  Score=427.88  Aligned_cols=625  Identities=13%  Similarity=0.064  Sum_probs=498.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH-------
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLW-------  162 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~-------  162 (765)
                      ....++.++......++.+.|.+.+++++.++|+++.++..++.++...|+.++|.+.++++++++|+++.++       
T Consensus        27 ~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~  106 (1157)
T PRK11447         27 AQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTML  106 (1157)
T ss_pred             HHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence            4566899999999999999999999999999999999999999999999999999999999999999998764       


Q ss_pred             ---------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004249          163 ---------KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKL-KFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKM  232 (765)
Q Consensus       163 ---------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  232 (765)
                               ..+|.++...|++++|+..|++++..+|.+... ...+..+....|++++|+..|+++++.+|+++.++..
T Consensus       107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~  186 (1157)
T PRK11447        107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNT  186 (1157)
T ss_pred             hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence                     556778999999999999999999998887643 2223333344699999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC----------------
Q 004249          233 GAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSG----------------  296 (765)
Q Consensus       233 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------  296 (765)
                      +|.++...|++++|+..+++++...+....  ............+....++..+...+..++..                
T Consensus       187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~--aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~  264 (1157)
T PRK11447        187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDA--AAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ  264 (1157)
T ss_pred             HHHHHHccCCHHHHHHHHHHHhhCCCchHH--HHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh
Confidence            999999999999999999999875443221  10011111111222333333333333332111                


Q ss_pred             CCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHH---
Q 004249          297 KELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGC---  373 (765)
Q Consensus       297 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---  373 (765)
                      ...+.......|.++...|++++|+..|++++... |.++.++..+|.++...|++++|+.+|++++..  .|++..   
T Consensus       265 ~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~--~p~~~~~~~  341 (1157)
T PRK11447        265 LADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALAL--DPHSSNRDK  341 (1157)
T ss_pred             ccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCccchhH
Confidence            11222222355888999999999999999999877 888999999999999999999999999999998  676532   


Q ss_pred             -----------HHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCc
Q 004249          374 -----------LHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNS  442 (765)
Q Consensus       374 -----------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  442 (765)
                                 ....+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|++.|++++..+|..   
T Consensus       342 ~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~---  418 (1157)
T PRK11447        342 WESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN---  418 (1157)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---
Confidence                       223558889999999999999999999999999999999999999999999999999999998887   


Q ss_pred             ccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcc-cccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 004249          443 DKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSH-QEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLI  521 (765)
Q Consensus       443 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  521 (765)
                               ..++..++.++.. ++.++|+..+..+...... ... ....-....+..+|.++...|++++|+..|+++
T Consensus       419 ---------~~a~~~L~~l~~~-~~~~~A~~~l~~l~~~~~~~~~~-~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~A  487 (1157)
T PRK11447        419 ---------TNAVRGLANLYRQ-QSPEKALAFIASLSASQRRSIDD-IERSLQNDRLAQQAEALENQGKWAQAAELQRQR  487 (1157)
T ss_pred             ---------HHHHHHHHHHHHh-cCHHHHHHHHHhCCHHHHHHHHH-HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                     4667778888754 5688888776543321000 000 000111345677899999999999999999999


Q ss_pred             HHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHH---------
Q 004249          522 LKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLL---------  592 (765)
Q Consensus       522 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~---------  592 (765)
                      +++.    |+++...+.++. ++...|++++|+..+++++..+|+++..+..++.++...++. ..+...+         
T Consensus       488 l~~~----P~~~~~~~~LA~-~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~-~~Al~~l~~l~~~~~~  561 (1157)
T PRK11447        488 LALD----PGSVWLTYRLAQ-DLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRD-RAALAHLNTLPRAQWN  561 (1157)
T ss_pred             HHhC----CCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHhCCchhcC
Confidence            9998    777877777777 999999999999999999999999998877665544332221 1111111         


Q ss_pred             -------------------------------HHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHH
Q 004249          593 -------------------------------RNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINL  641 (765)
Q Consensus       593 -------------------------------~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  641 (765)
                                                     ...+...|.++..+..+|.++...|++++|+..|.++++.+|+++.+.+
T Consensus       562 ~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~  641 (1157)
T PRK11447        562 SNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARL  641 (1157)
T ss_pred             hhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence                                           1234468899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHHhchHHHHHHHHHHHHhhhhccCCCCCCC
Q 004249          642 CVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFP  721 (765)
Q Consensus       642 ~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~~~~~~~~~  721 (765)
                      .++.++...+.          ..+|+..+.+.....|++..++..+|+++...|++++|+..|+++++..|++.      
T Consensus       642 ~la~~~~~~g~----------~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~------  705 (1157)
T PRK11447        642 GLIEVDIAQGD----------LAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP------  705 (1157)
T ss_pred             HHHHHHHHCCC----------HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC------
Confidence            99998876542          45788888888888999999999999999999999999999999999887431      


Q ss_pred             CCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 004249          722 DHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHCT  764 (765)
Q Consensus       722 ~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~k~l~  764 (765)
                               ...-.+.+...+|.+|...|++++|+..+++++.
T Consensus       706 ---------~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        706 ---------PSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             ---------cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence                     1111345667789999999999999999999873

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-47  Score=371.55  Aligned_cols=453  Identities=17%  Similarity=0.130  Sum_probs=435.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 004249           94 MLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG  173 (765)
Q Consensus        94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  173 (765)
                      .+..|...++.|+|.+|++....+...+|.+.+....++.++++..+++.....-..+++..|...+++.++|.++...|
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg  130 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG  130 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249          174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDY  253 (765)
Q Consensus       174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  253 (765)
                      ++++|+..|+.++++.|+..++|.++|.++...|+.+.|..+|..+++++|+...+...+|.++...|+..+|..+|.++
T Consensus       131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA  210 (966)
T KOG4626|consen  131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA  210 (966)
T ss_pred             hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCC
Q 004249          254 LKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVS  333 (765)
Q Consensus       254 ~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  333 (765)
                      ++..|....  +|.++|.++...|+...|+..|++++++    +|....+++++|.+|...+.++.|+.+|.+++... |
T Consensus       211 i~~qp~fAi--awsnLg~~f~~~Gei~~aiq~y~eAvkl----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p  283 (966)
T KOG4626|consen  211 IETQPCFAI--AWSNLGCVFNAQGEIWLAIQHYEEAVKL----DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P  283 (966)
T ss_pred             HhhCCceee--eehhcchHHhhcchHHHHHHHHHHhhcC----CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence            999998876  7889999999999999999999999999    89999999999999999999999999999998776 8


Q ss_pred             ChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 004249          334 DHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLA  413 (765)
Q Consensus       334 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  413 (765)
                      .+..++.++|.+|..+|..+-|+..|++++++  .|+.+.++.++|.++...|+..+|..+|.+++.+.|..+++...||
T Consensus       284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLg  361 (966)
T KOG4626|consen  284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLG  361 (966)
T ss_pred             cchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHH
Confidence            99999999999999999999999999999999  9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhh
Q 004249          414 SLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEE  493 (765)
Q Consensus       414 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~  493 (765)
                      .++.++|++++|..+|.++++..|.-            ..+...+|.+|.++|++++|+..|..++.         ..|.
T Consensus       362 ni~~E~~~~e~A~~ly~~al~v~p~~------------aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---------I~P~  420 (966)
T KOG4626|consen  362 NIYREQGKIEEATRLYLKALEVFPEF------------AAAHNNLASIYKQQGNLDDAIMCYKEALR---------IKPT  420 (966)
T ss_pred             HHHHHhccchHHHHHHHHHHhhChhh------------hhhhhhHHHHHHhcccHHHHHHHHHHHHh---------cCch
Confidence            99999999999999999999998887            67889999999999999999999999997         8899


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHH
Q 004249          494 HRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNR  573 (765)
Q Consensus       494 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  573 (765)
                      -.+++.++|.+|..+|+.+.|+..|.+++..+    |.-..+...++. ++...|+..+|+..|+.++++.|+.+.++.+
T Consensus       421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n----Pt~AeAhsNLas-i~kDsGni~~AI~sY~~aLklkPDfpdA~cN  495 (966)
T KOG4626|consen  421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQIN----PTFAEAHSNLAS-IYKDSGNIPEAIQSYRTALKLKPDFPDAYCN  495 (966)
T ss_pred             HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC----cHHHHHHhhHHH-HhhccCCcHHHHHHHHHHHccCCCCchhhhH
Confidence            99999999999999999999999999999999    777777777777 9999999999999999999999999999998


Q ss_pred             HHHHHhhh
Q 004249          574 YYKLVSRF  581 (765)
Q Consensus       574 ~~~~~~~~  581 (765)
                      +...+.-.
T Consensus       496 llh~lq~v  503 (966)
T KOG4626|consen  496 LLHCLQIV  503 (966)
T ss_pred             HHHHHHHH
Confidence            87776543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-44  Score=352.74  Aligned_cols=434  Identities=16%  Similarity=0.150  Sum_probs=405.5

Q ss_pred             HHhhcCCCcchhhhhccccccccCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHH
Q 004249           54 IIFGFGSRKRSREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGL  133 (765)
Q Consensus        54 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~  133 (765)
                      ++--..+.|+++++.+.-.-+         -...+.+...++..+..+++..+++.....-..+++.+|...+++..+|.
T Consensus        54 lah~~yq~gd~~~a~~h~nmv---------~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN  124 (966)
T KOG4626|consen   54 LAHRLYQGGDYKQAEKHCNMV---------GQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLAN  124 (966)
T ss_pred             HHHHHHhccCHHHHHHHHhHh---------hccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHH
Confidence            445566788888877543111         11112222334444577899999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHH
Q 004249          134 VHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAA  213 (765)
Q Consensus       134 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  213 (765)
                      ++...|+++.|+..|+.+++++|+..++|.++|.++...|+.+.|..+|..+++++|....+...+|.++...|+..+|.
T Consensus       125 ~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~  204 (966)
T KOG4626|consen  125 ILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAK  204 (966)
T ss_pred             HHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Q 004249          214 DVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVY  293 (765)
Q Consensus       214 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  293 (765)
                      .+|.++++..|....+|.+||.++..+|+...|+..|++++.++|...+  +|.++|.+|...+.++.|+..|.+++.. 
T Consensus       205 ~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~d--AYiNLGnV~ke~~~~d~Avs~Y~rAl~l-  281 (966)
T KOG4626|consen  205 ACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLD--AYINLGNVYKEARIFDRAVSCYLRALNL-  281 (966)
T ss_pred             HHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchH--HHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence            9999999999999999999999999999999999999999999999988  7889999999999999999999999999 


Q ss_pred             cCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHH
Q 004249          294 YSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGC  373 (765)
Q Consensus       294 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  373 (765)
                         .|....++.++|.+|..+|..+-|+..|++++... |..++++.++|..+...|+..+|..+|.+++.+  .|+.++
T Consensus       282 ---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~had  355 (966)
T KOG4626|consen  282 ---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHAD  355 (966)
T ss_pred             ---CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHH
Confidence               88899999999999999999999999999999877 899999999999999999999999999999999  999999


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhH
Q 004249          374 LHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIR  453 (765)
Q Consensus       374 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (765)
                      +..+||.+|..+|.+++|...|.++++..|+...++..||.+|.++|++++|+..|++++.+.|..            ..
T Consensus       356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f------------Ad  423 (966)
T KOG4626|consen  356 AMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF------------AD  423 (966)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH------------HH
Confidence            999999999999999999999999999999999999999999999999999999999999999987            78


Q ss_pred             HHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhcc
Q 004249          454 IKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGY  526 (765)
Q Consensus       454 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  526 (765)
                      ++..+|..|..+|+.+.|++.+.+++.         .+|.-.+++.+||.+|...|+..+|+..|+.++++.|
T Consensus       424 a~~NmGnt~ke~g~v~~A~q~y~rAI~---------~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP  487 (966)
T KOG4626|consen  424 ALSNMGNTYKEMGDVSAAIQCYTRAIQ---------INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP  487 (966)
T ss_pred             HHHhcchHHHHhhhHHHHHHHHHHHHh---------cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence            899999999999999999999999997         8899999999999999999999999999999999993

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=2.2e-40  Score=387.96  Aligned_cols=583  Identities=13%  Similarity=0.051  Sum_probs=464.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHH----------------HHHHHHHHHcCCHHHHHHHHHHHhccC
Q 004249           92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSY----------------HILGLVHDALGNTAKAMGCYWLAACYK  155 (765)
Q Consensus        92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~----------------~~l~~~~~~~g~~~~A~~~~~~a~~~~  155 (765)
                      ..+...+.++...|++++|...++++++.+|+++.++                ..+|.++...|++++|+..|++++..+
T Consensus        63 ~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~  142 (1157)
T PRK11447         63 DVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA  142 (1157)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC
Confidence            3456677889999999999999999999999998753                566778999999999999999999998


Q ss_pred             CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004249          156 QKDSSL-WKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGA  234 (765)
Q Consensus       156 p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  234 (765)
                      |.+... ...+..+....|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...+....+.....
T Consensus       143 p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~  222 (1157)
T PRK11447        143 PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWY  222 (1157)
T ss_pred             CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHH
Confidence            887642 2233334445699999999999999999999999999999999999999999999999876544322211111


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCCCH------------------HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Q 004249          235 KLYQKSGQIESSVDILEDYLKGHPTEADF------------------GVIDLLASMLVQMNAYDRVLKHIELVDLVYYSG  296 (765)
Q Consensus       235 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  296 (765)
                      ......+....++..+...+...|+....                  .....+|.++...|++++|+..|++++..    
T Consensus       223 ~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~----  298 (1157)
T PRK11447        223 GQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA----  298 (1157)
T ss_pred             HHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence            11122233444444444444444433210                  01235688999999999999999999999    


Q ss_pred             CCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHH--------------HHHHHHHHHHccccHHHHHHHHHHH
Q 004249          297 KELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAE--------------SINEIADLFKNRELYSTALKYYHML  362 (765)
Q Consensus       297 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------------~~~~la~~~~~~g~~~~A~~~~~~~  362 (765)
                      .|....++..+|.++...|++++|+..|++++... |.+..              ....+|.++...|++++|+..|+++
T Consensus       299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A  377 (1157)
T PRK11447        299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALD-PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA  377 (1157)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            77788999999999999999999999999998766 33221              2234578889999999999999999


Q ss_pred             HhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCc
Q 004249          363 EANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNS  442 (765)
Q Consensus       363 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  442 (765)
                      +..  .|+++.++..+|.++...|++++|+..|+++++.+|.+..++..++.++. .++.++|+.+++......+.... 
T Consensus       378 l~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~-  453 (1157)
T PRK11447        378 RQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSID-  453 (1157)
T ss_pred             HHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHH-
Confidence            999  89999999999999999999999999999999999999999999999985 46789999998776543322100 


Q ss_pred             ccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 004249          443 DKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLIL  522 (765)
Q Consensus       443 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  522 (765)
                        ..........+..+|.++...|++++|+..+.+++.         .+|+++.++..+|.++...|++++|+..+++++
T Consensus       454 --~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~---------~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al  522 (1157)
T PRK11447        454 --DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA---------LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLA  522 (1157)
T ss_pred             --HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH---------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence              000011124566789999999999999999999997         788999999999999999999999999999999


Q ss_pred             HhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHH----------------------------------------HH
Q 004249          523 KLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFM----------------------------------------VK  562 (765)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~----------------------------------------l~  562 (765)
                      ...    |.++...+..+. ++...+++++|+..++++                                        ++
T Consensus       523 ~~~----P~~~~~~~a~al-~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~  597 (1157)
T PRK11447        523 QQK----PNDPEQVYAYGL-YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR  597 (1157)
T ss_pred             HcC----CCCHHHHHHHHH-HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence            887    555555444433 344445554444443321                                        23


Q ss_pred             hCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHH
Q 004249          563 LHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLC  642 (765)
Q Consensus       563 ~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  642 (765)
                      ..|.++..+..++.++...++. +.+...+.+++...|+++.++..+|.++...|++++|+..|.+++...|+++.+...
T Consensus       598 ~~p~~~~~~~~La~~~~~~g~~-~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~  676 (1157)
T PRK11447        598 QQPPSTRIDLTLADWAQQRGDY-AAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRR  676 (1157)
T ss_pred             hCCCCchHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHH
Confidence            5788888888888888777775 688999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCc------hHHHhHHHHHHHhchHHHHHHHHHHHHhh
Q 004249          643 VGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQ------EALYNIARAYHHVGLVSLAASYYEKVLAM  710 (765)
Q Consensus       643 l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~lg~~~~~~g~~~~A~~~y~k~l~~  710 (765)
                      +|.++...+          ...+|+..+++.....|+.+      .++..+|+++...|++++|+..|++++..
T Consensus       677 la~~~~~~g----------~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~  740 (1157)
T PRK11447        677 VALAWAALG----------DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVA  740 (1157)
T ss_pred             HHHHHHhCC----------CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            998887433          24678888888877655432      46778899999999999999999999973

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.9e-40  Score=342.04  Aligned_cols=607  Identities=14%  Similarity=0.108  Sum_probs=507.0

Q ss_pred             CHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCH--HHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004249          106 RYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNT--AKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLS  183 (765)
Q Consensus       106 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  183 (765)
                      .+..|..+|..+-.++-.....+...+..+...|..  +.|...|..+++..|++..+++..|.+.+..|+|..|+.+|+
T Consensus       109 ~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk  188 (1018)
T KOG2002|consen  109 LFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYK  188 (1018)
T ss_pred             HHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHH
Confidence            456777888888777776666666667777777765  999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC
Q 004249          184 EAVKADPND-FKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ---IESSVDILEDYLKGHPT  259 (765)
Q Consensus       184 ~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~  259 (765)
                      +++.++|.. ++....+|.|+..+|+.+.|+..|.++++++|.++.++..||.+-....+   +..++..+.++...+|.
T Consensus       189 ~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~  268 (1018)
T KOG2002|consen  189 KALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE  268 (1018)
T ss_pred             HHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC
Confidence            999999854 57788999999999999999999999999999999999999988776554   67899999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHH
Q 004249          260 EADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESI  339 (765)
Q Consensus       260 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  339 (765)
                      +|.  ++..++..++..|+|..+..+...++.. ....+.....++.+|.++..+|++++|..+|..++...+....-.+
T Consensus       269 nP~--~l~~LAn~fyfK~dy~~v~~la~~ai~~-t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~  345 (1018)
T KOG2002|consen  269 NPV--ALNHLANHFYFKKDYERVWHLAEHAIKN-TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL  345 (1018)
T ss_pred             CcH--HHHHHHHHHhhcccHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence            998  7889999999999999999999999887 2234456677999999999999999999999999887744447789


Q ss_pred             HHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004249          340 NEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALK----EREKSIIYFYKALQILEDNIDARLTLASL  415 (765)
Q Consensus       340 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~  415 (765)
                      +.+|+.++..|+++.|..+|++++..  .|++.++...+|.+|...+    ..+.|..++.++++..|.+.++|..++.+
T Consensus       346 ~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql  423 (1018)
T KOG2002|consen  346 VGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL  423 (1018)
T ss_pred             cchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            99999999999999999999999999  9999999999999999886    57899999999999999999999999999


Q ss_pred             HHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccC-h---
Q 004249          416 LLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFN-H---  491 (765)
Q Consensus       416 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~-~---  491 (765)
                      +.... ...++..|..+++.-.....+       ..+.+...+|..++..|.+.+|...+..+.....+   +.. +   
T Consensus       424 ~e~~d-~~~sL~~~~~A~d~L~~~~~~-------ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~---~~n~de~~  492 (1018)
T KOG2002|consen  424 LEQTD-PWASLDAYGNALDILESKGKQ-------IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE---VANKDEGK  492 (1018)
T ss_pred             HHhcC-hHHHHHHHHHHHHHHHHcCCC-------CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh---hcCccccc
Confidence            97554 444477776665321111000       12477889999999999999999999988753110   000 0   


Q ss_pred             hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhh
Q 004249          492 EEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTW  571 (765)
Q Consensus       492 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  571 (765)
                      ..+....+++|.++...++++.|.+.|..++..+    |.-......++. +....++..+|...++.++..+..++.+|
T Consensus       493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh----p~YId~ylRl~~-ma~~k~~~~ea~~~lk~~l~~d~~np~ar  567 (1018)
T KOG2002|consen  493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKEH----PGYIDAYLRLGC-MARDKNNLYEASLLLKDALNIDSSNPNAR  567 (1018)
T ss_pred             cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC----chhHHHHHHhhH-HHHhccCcHHHHHHHHHHHhcccCCcHHH
Confidence            1224468899999999999999999999999988    555555555555 66778999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHHhcC--CCCCchhhhhhhhhh------------hhhHHHHHHHHHHHHhhCCCCh
Q 004249          572 NRYYKLVSRFEKIFSKHAKLLRNVRAKYR--DFVPPIIISGHQFTM------------ISHHQDAAREYLEAYKLLPENP  637 (765)
Q Consensus       572 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~~g~~~~~------------~~~~~~A~~~~~~a~~~~p~~~  637 (765)
                      ..++.+.....+. ..+.+-+...+++..  .++..++.+|++++.            .+.+.+|+..|.+++..+|.|.
T Consensus       568 sl~G~~~l~k~~~-~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~  646 (1018)
T KOG2002|consen  568 SLLGNLHLKKSEW-KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM  646 (1018)
T ss_pred             HHHHHHHHhhhhh-cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchh
Confidence            9999666543332 355554544444422  345667899998765            4789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHHhchHHHHHHHHHHHHhhhhccCCC
Q 004249          638 LINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCII  717 (765)
Q Consensus       638 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~~~~~  717 (765)
                      .+.+.+|+++.+.+.          +..|..+|.+-++...+...++.|+|+||...|++..||+.|+.++...-+    
T Consensus       647 yAANGIgiVLA~kg~----------~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~----  712 (1018)
T KOG2002|consen  647 YAANGIGIVLAEKGR----------FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK----  712 (1018)
T ss_pred             hhccchhhhhhhccC----------chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence            999999999876652          457888888888877788899999999999999999999999999998642    


Q ss_pred             CCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 004249          718 PGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHC  763 (765)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~k~l  763 (765)
                                     .-+.++...||.+++..|.+.+|.+.+.+.+
T Consensus       713 ---------------~~~~~vl~~Lara~y~~~~~~eak~~ll~a~  743 (1018)
T KOG2002|consen  713 ---------------KNRSEVLHYLARAWYEAGKLQEAKEALLKAR  743 (1018)
T ss_pred             ---------------cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence                           1357999999999999999999999988764

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.1e-39  Score=334.47  Aligned_cols=567  Identities=16%  Similarity=0.122  Sum_probs=494.6

Q ss_pred             CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 004249           87 VCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEEL-PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLI  165 (765)
Q Consensus        87 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l  165 (765)
                      .++++..++++|.+.+..|+|..|+.+|++++.++|.. ++....+|.|+.++|+.+.|+..|.++++++|.+..++..|
T Consensus       160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L  239 (1018)
T KOG2002|consen  160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVAL  239 (1018)
T ss_pred             CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHH
Confidence            35678899999999999999999999999999999965 57889999999999999999999999999999999999999


Q ss_pred             HHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Q 004249          166 FPWLIEQGD---TTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN---IEALKMGAKLYQK  239 (765)
Q Consensus       166 a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~  239 (765)
                      |.+-....+   +..++..+.++...+|.+|.++..|+..++-.|+|..+..+...++......   .+.++.+|..|..
T Consensus       240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha  319 (1018)
T KOG2002|consen  240 GEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA  319 (1018)
T ss_pred             HHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence            988766554   6789999999999999999999999999999999999999999998866333   4569999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC----
Q 004249          240 SGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLG----  315 (765)
Q Consensus       240 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----  315 (765)
                      +|++++|..+|.+++..+|++... .++.+|++++..|+++.|+.+|++++..    .|........+|.+|...+    
T Consensus       320 ~Gd~ekA~~yY~~s~k~~~d~~~l-~~~GlgQm~i~~~dle~s~~~fEkv~k~----~p~~~etm~iLG~Lya~~~~~~~  394 (1018)
T KOG2002|consen  320 QGDFEKAFKYYMESLKADNDNFVL-PLVGLGQMYIKRGDLEESKFCFEKVLKQ----LPNNYETMKILGCLYAHSAKKQE  394 (1018)
T ss_pred             hccHHHHHHHHHHHHccCCCCccc-cccchhHHHHHhchHHHHHHHHHHHHHh----CcchHHHHHHHHhHHHhhhhhhH
Confidence            999999999999999999998432 4679999999999999999999999999    7888999999999998886    


Q ss_pred             ChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHHHHhccHHHHH
Q 004249          316 NTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEAN---AGVHNDGCLHLKIAECSLALKEREKSI  392 (765)
Q Consensus       316 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~  392 (765)
                      ..+.|..++.+++... |.+.++|..++.++....-+.. +..|..++.+   ...+--++.+.++|..++..|++.+|.
T Consensus       395 ~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~  472 (1018)
T KOG2002|consen  395 KRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL  472 (1018)
T ss_pred             HHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence            6788888999988776 8889999999999877655544 8888888743   114456789999999999999999999


Q ss_pred             HHHHHHHHH-----cCCC-----HHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHH
Q 004249          393 IYFYKALQI-----LEDN-----IDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIY  462 (765)
Q Consensus       393 ~~~~~al~~-----~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  462 (765)
                      ..|..++..     +++.     ....+++++++...++++.|.+.|..++...|..            +..+..++.+.
T Consensus       473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y------------Id~ylRl~~ma  540 (1018)
T KOG2002|consen  473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY------------IDAYLRLGCMA  540 (1018)
T ss_pred             HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh------------HHHHHHhhHHH
Confidence            999999987     1221     2358899999999999999999999999988887            67788888888


Q ss_pred             HhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhh
Q 004249          463 KAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQ  542 (765)
Q Consensus       463 ~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  542 (765)
                      ...+...+|...+..++.         .+..++.++..+|..+.....+..|.+-|+..++....  ..++..+..+|. 
T Consensus       541 ~~k~~~~ea~~~lk~~l~---------~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~--~~D~YsliaLGN-  608 (1018)
T KOG2002|consen  541 RDKNNLYEASLLLKDALN---------IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST--KTDAYSLIALGN-  608 (1018)
T ss_pred             HhccCcHHHHHHHHHHHh---------cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc--CCchhHHHHhhH-
Confidence            889999999999998886         66788999999999999999999999988888875532  256666766766 


Q ss_pred             cccc------------cCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhh
Q 004249          543 IPCN------------TTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISG  610 (765)
Q Consensus       543 ~~~~------------~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g  610 (765)
                      +++.            .+.+++|++.|.++|+.+|.|..+-+.++.++...+.. +.+...|.++.+...+....++.+|
T Consensus       609 ~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~-~~A~dIFsqVrEa~~~~~dv~lNla  687 (1018)
T KOG2002|consen  609 VYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRF-SEARDIFSQVREATSDFEDVWLNLA  687 (1018)
T ss_pred             HHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCc-hHHHHHHHHHHHHHhhCCceeeeHH
Confidence            4443            46678999999999999999999999999998876665 6888999999888888899999999


Q ss_pred             hhhhhhhhHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHH
Q 004249          611 HQFTMISHHQDAAREYLEAYKLL--PENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIA  688 (765)
Q Consensus       611 ~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg  688 (765)
                      ++|..+|+|..|++.|+.+++..  .+++.+..+||.+|+..+.          ..++...+.++..+.|.+..+.||+|
T Consensus       688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~----------~~eak~~ll~a~~~~p~~~~v~FN~a  757 (1018)
T KOG2002|consen  688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK----------LQEAKEALLKARHLAPSNTSVKFNLA  757 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHhCCccchHHhHHH
Confidence            99999999999999999999754  4568999999999998774          45778888889999999999999999


Q ss_pred             HHHHHhc
Q 004249          689 RAYHHVG  695 (765)
Q Consensus       689 ~~~~~~g  695 (765)
                      -+..+++
T Consensus       758 ~v~kkla  764 (1018)
T KOG2002|consen  758 LVLKKLA  764 (1018)
T ss_pred             HHHHHHH
Confidence            9888764

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=100.00  E-value=1.2e-37  Score=346.69  Aligned_cols=596  Identities=10%  Similarity=-0.028  Sum_probs=466.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL  169 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  169 (765)
                      .+...+..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|.+...+..++.+ 
T Consensus        43 ~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i-  121 (987)
T PRK09782         43 VIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI-  121 (987)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-
Confidence            4556788899999999999999999999999999999999999999999999999999999999999999888888766 


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--------HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004249          170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL--------YVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSG  241 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  241 (765)
                         +++.+|+..|++++..+|++.+++..++..        |.+.++..+++.  .+.+...|........++.+|..+|
T Consensus       122 ---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~  196 (987)
T PRK09782        122 ---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLK  196 (987)
T ss_pred             ---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHh
Confidence               999999999999999999999999999998        666666666665  4444444445556667799999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHH
Q 004249          242 QIESSVDILEDYLKGHPTEADFGVIDLLASMLVQ-MNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKA  320 (765)
Q Consensus       242 ~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  320 (765)
                      ++++|+..+.++++..|.+..  .+..++.+|.. +++ +++..+++.   .    ......++..++..+...|+.++|
T Consensus       197 dw~~Ai~lL~~L~k~~pl~~~--~~~~L~~ay~q~l~~-~~a~al~~~---~----lk~d~~l~~ala~~yi~~G~~~~A  266 (987)
T PRK09782        197 QWSQADTLYNEARQQNTLSAA--ERRQWFDVLLAGQLD-DRLLALQSQ---G----IFTDPQSRITYATALAYRGEKARL  266 (987)
T ss_pred             CHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHhhCH-HHHHHHhch---h----cccCHHHHHHHHHHHHHCCCHHHH
Confidence            999999999999999998866  56689999988 477 777777553   2    225778888999999999999999


Q ss_pred             HHHHHhhcccC--CCChHH-----------------------------HHHHHHHHHHccccHHHHHHHHHHHHhccCCC
Q 004249          321 EILLTAIHWEN--VSDHAE-----------------------------SINEIADLFKNRELYSTALKYYHMLEANAGVH  369 (765)
Q Consensus       321 ~~~~~~~~~~~--~~~~~~-----------------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  369 (765)
                      ...+++.-...  .|.+..                             ....++..+...++++-+.++    +..  .|
T Consensus       267 ~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~  340 (987)
T PRK09782        267 QHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL----LAT--LP  340 (987)
T ss_pred             HHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH----hcC--CC
Confidence            99998853221  122222                             222234556667777755433    333  56


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhh
Q 004249          370 NDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWW  449 (765)
Q Consensus       370 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  449 (765)
                      .++. ...........+.+.+|....+...+..|.+.++...++....+.|+.++|..+|+++.....+. .        
T Consensus       341 ~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~--------  410 (987)
T PRK09782        341 ANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA-R--------  410 (987)
T ss_pred             cchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc-c--------
Confidence            6654 22222233445778888888888888889999999999999999999999999999999863332 0        


Q ss_pred             hhhHHHHHHHHHHHhcch---hHHHHHh----------------------hHHHHhhhcccccccChhh--HHHHHHHHH
Q 004249          450 LNIRIKIKLCRIYKAKGM---IEGFVDM----------------------LLPLVCESSHQEETFNHEE--HRLLIIDLC  502 (765)
Q Consensus       450 ~~~~~~~~~a~~~~~~~~---~~~A~~~----------------------~~~~~~~~~~l~~~~~~~~--~~~~~~~l~  502 (765)
                      ....+...++.+|...+.   ..+++..                      +....      ..+-..|.  ++.++..+|
T Consensus       411 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~al~~~p~~~~~~a~~~LG  484 (987)
T PRK09782        411 LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV------RLLGDMSPSYDAAAWNRLA  484 (987)
T ss_pred             cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH------HhcccCCCCCCHHHHHHHH
Confidence            011233366666666655   2222211                      11111      11115577  889999999


Q ss_pred             HHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhh
Q 004249          503 KTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFE  582 (765)
Q Consensus       503 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  582 (765)
                      .++.. +++++|+..+.+++...    |+... ...++. ++...|++++|+..|++++...|.+ ..+...+.++...|
T Consensus       485 ~~l~~-~~~~eAi~a~~~Al~~~----Pd~~~-~L~lA~-al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~G  556 (987)
T PRK09782        485 KCYRD-TLPGVALYAWLQAEQRQ----PDAWQ-HRAVAY-QAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAG  556 (987)
T ss_pred             HHHHh-CCcHHHHHHHHHHHHhC----CchHH-HHHHHH-HHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCC
Confidence            99987 89999999999999888    44332 222333 5578999999999999988775654 45666676766666


Q ss_pred             hhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCcccCchhHH
Q 004249          583 KIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQC  662 (765)
Q Consensus       583 ~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  662 (765)
                      +. ..+..++.+.+...|........++......|++++|+..|.++++.+|+ +.+...+|.++...+          .
T Consensus       557 d~-~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG----------~  624 (987)
T PRK09782        557 NG-AARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRH----------N  624 (987)
T ss_pred             CH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC----------C
Confidence            55 57888888888888877655555555555669999999999999999996 888888888877554          2


Q ss_pred             HHHHHHHHHHhhcccCCCchHHHhHHHHHHHhchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHH
Q 004249          663 VAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNL  742 (765)
Q Consensus       663 ~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl  742 (765)
                      ..+|+..+.+...+.|++..+++++|.++...|++++|+..|+++++.+|++                     +++.+|+
T Consensus       625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~---------------------~~a~~nL  683 (987)
T PRK09782        625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD---------------------PALIRQL  683 (987)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------------HHHHHHH
Confidence            5789999999999999999999999999999999999999999999999954                     7899999


Q ss_pred             HHHHHhcCCHHHHHHHHHhhcC
Q 004249          743 HLIYKKSGAVDLARQVLRDHCT  764 (765)
Q Consensus       743 ~~iy~~~g~~~~A~~~l~k~l~  764 (765)
                      |.+|...|+++.|+..+++.+.
T Consensus       684 A~al~~lGd~~eA~~~l~~Al~  705 (987)
T PRK09782        684 AYVNQRLDDMAATQHYARLVID  705 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHh
Confidence            9999999999999999999864

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=100.00  E-value=5.3e-35  Score=325.49  Aligned_cols=621  Identities=10%  Similarity=-0.019  Sum_probs=470.7

Q ss_pred             HHhhcCCCcchhhhhccccccccCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHH
Q 004249           54 IIFGFGSRKRSREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGL  133 (765)
Q Consensus        54 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~  133 (765)
                      .+.....+|+++++...+   ..    .....|.++.  ..+..+..++..|++++|+..++++++.+|.+...+..++.
T Consensus        50 ~a~~~~~~Gd~~~A~~~l---~~----Al~~dP~n~~--~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~  120 (987)
T PRK09782         50 KALKAQKNNDEATAIREF---EY----IHQQVPDNIP--LTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAA  120 (987)
T ss_pred             HHHHHHhCCCHHHHHHHH---HH----HHHhCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            445555668888777666   11    1122233333  34777889999999999999999999999999888888876


Q ss_pred             HHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH--------HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249          134 VHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPW--------LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE  205 (765)
Q Consensus       134 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~--------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  205 (765)
                      +    +++++|+..|++++..+|++..++..++..        |.+.++..+++.  .+.+..+|........++.+|..
T Consensus       121 i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~  194 (987)
T PRK09782        121 I----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIY  194 (987)
T ss_pred             h----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHH
Confidence            6    999999999999999999999999999998        666655555555  33344344455566777999999


Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 004249          206 LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK-SGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLK  284 (765)
Q Consensus       206 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~  284 (765)
                      +|++++|+..+.++++..|.+......++.+|.. +++ +++..+++..++   .++.  ++..++..+...|+.++|..
T Consensus       195 l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~--l~~ala~~yi~~G~~~~A~~  268 (987)
T PRK09782        195 LKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQ--SRITYATALAYRGEKARLQH  268 (987)
T ss_pred             HhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHH--HHHHHHHHHHHCCCHHHHHH
Confidence            9999999999999999999999999999999998 577 888888665333   3333  77799999999999999999


Q ss_pred             HHHHHHHHhcCCCCccHHHH-----------------------------HHHHHHHHhcCChhHHHHHHHhhcccCCCCh
Q 004249          285 HIELVDLVYYSGKELLLALK-----------------------------IKAGICHIQLGNTDKAEILLTAIHWENVSDH  335 (765)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~-----------------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  335 (765)
                      .+++....... .+.+....                             ..++..+...++++-+..+ ..+    .|.+
T Consensus       269 ~L~~~~~~~~~-~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~  342 (987)
T PRK09782        269 YLIENKPLFTT-DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL-LAT----LPAN  342 (987)
T ss_pred             HHHhCcccccC-CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH-hcC----CCcc
Confidence            99886544221 12222222                             2224455666666644443 222    2333


Q ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCC---HHHHHHH
Q 004249          336 AESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDN---IDARLTL  412 (765)
Q Consensus       336 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l  412 (765)
                      +. ...........+.+.+|...+..+...  .|.+...+..++......|+.++|...|+.+....++.   ......+
T Consensus       343 ~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l  419 (987)
T PRK09782        343 EM-LEERYAVSVATRNKAEALRLARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARL  419 (987)
T ss_pred             hH-HHHHHhhccccCchhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHH
Confidence            32 222222335668888888888888777  79999999999999999999999999999999863222   2344478


Q ss_pred             HHHHHHcCC---HHHHHHhcC-------------------------CCCCccccccCcccchhhhhhhHHHHHHHHHHHh
Q 004249          413 ASLLLEDAK---DEEAISLLT-------------------------PPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKA  464 (765)
Q Consensus       413 ~~~~~~~g~---~~~A~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  464 (765)
                      +.+|...+.   ...+..+..                         .++...|.          -....+++.+|.++..
T Consensus       420 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~----------~~~~~a~~~LG~~l~~  489 (987)
T PRK09782        420 ASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSP----------SYDAAAWNRLAKCYRD  489 (987)
T ss_pred             HHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCC----------CCCHHHHHHHHHHHHh
Confidence            999988876   444444422                         11111122          0135788999999987


Q ss_pred             cchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcc
Q 004249          465 KGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIP  544 (765)
Q Consensus       465 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  544 (765)
                       ++..+|+..+.+++.         ..|++. ....+|.++...|++++|+..|++++...    |.+ .....++. ++
T Consensus       490 -~~~~eAi~a~~~Al~---------~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~----p~~-~a~~~la~-al  552 (987)
T PRK09782        490 -TLPGVALYAWLQAEQ---------RQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHD----MSN-EDLLAAAN-TA  552 (987)
T ss_pred             -CCcHHHHHHHHHHHH---------hCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccC----CCc-HHHHHHHH-HH
Confidence             889999998988886         445544 35667777789999999999999987653    332 33445555 88


Q ss_pred             cccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHH
Q 004249          545 CNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAR  624 (765)
Q Consensus       545 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~  624 (765)
                      ...|++++|..+|+++++..|++......+.......|+ +..+...+.+.+...|+ ...+..+|.++...|++++|+.
T Consensus       553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr-~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~  630 (987)
T PRK09782        553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ-PELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVS  630 (987)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHH
Confidence            899999999999999999999886555443333322243 36889999999999996 7888999999999999999999


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHHhchHHHHHHHH
Q 004249          625 EYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYY  704 (765)
Q Consensus       625 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~y  704 (765)
                      .|.+++.++|+++.+..++|.++...+          ...+|+..+.+..++.|+++++++++|.++..+|++++|+.+|
T Consensus       631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G----------~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l  700 (987)
T PRK09782        631 DLRAALELEPNNSNYQAALGYALWDSG----------DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA  700 (987)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999999999999988654          2468899999999999999999999999999999999999999


Q ss_pred             HHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 004249          705 EKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHCT  764 (765)
Q Consensus       705 ~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~k~l~  764 (765)
                      ++++++.|++                     ..+.+-.+++.....++..|.+.+.+..+
T Consensus       701 ~~Al~l~P~~---------------------a~i~~~~g~~~~~~~~~~~a~~~~~r~~~  739 (987)
T PRK09782        701 RLVIDDIDNQ---------------------ALITPLTPEQNQQRFNFRRLHEEVGRRWT  739 (987)
T ss_pred             HHHHhcCCCC---------------------chhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999964                     45566677777777777777777766543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=3.3e-34  Score=315.91  Aligned_cols=440  Identities=12%  Similarity=0.003  Sum_probs=359.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 004249           92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE  171 (765)
Q Consensus        92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  171 (765)
                      ..+..+|..++..|+|++|+..|++++...|+ +..+..+|.||..+|++++|+..+.++++++|++..++..+|.++..
T Consensus       128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            34567899999999999999999999999996 78899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004249          172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILE  251 (765)
Q Consensus       172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  251 (765)
                      +|++++|+..|..+...++.+......+.....    ...+...+..+++..|.+...+..++..+. ......+...+.
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  281 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLL----KKFAESKAKEILETKPENLPSVTFVGNYLQ-SFRPKPRPAGLE  281 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHH-HccCCcchhhhh
Confidence            999999999998887776644433222221111    134556677777888887666666666543 233334444455


Q ss_pred             HHHhcCCCCCCHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhc
Q 004249          252 DYLKGHPTEADFGVIDLLASMLV---QMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIH  328 (765)
Q Consensus       252 ~~~~~~p~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  328 (765)
                      ...+.++....  .+..++....   ..+.+++|+..|++++... ...+....++..+|.++...|++++|+..+++++
T Consensus       282 ~~~~~~~~~~~--~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~-~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal  358 (615)
T TIGR00990       282 DSNELDEETGN--GQLQLGLKSPESKADESYEEAARAFEKALDLG-KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI  358 (615)
T ss_pred             ccccccccccc--chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55555555444  3345554432   3478999999999999862 2235666788999999999999999999999998


Q ss_pred             ccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHH
Q 004249          329 WENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDA  408 (765)
Q Consensus       329 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  408 (765)
                      ... |.....+..+|.++...|++++|+..|++++..  +|+++.+++.+|.++...|++++|+..|+++++++|++..+
T Consensus       359 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~  435 (615)
T TIGR00990       359 ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS  435 (615)
T ss_pred             HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH
Confidence            876 788999999999999999999999999999999  89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccc
Q 004249          409 RLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEET  488 (765)
Q Consensus       409 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~  488 (765)
                      +..+|.++...|++++|+..+++++...|..            +.++..+|.++...|++++|+..|.+++.        
T Consensus       436 ~~~la~~~~~~g~~~eA~~~~~~al~~~P~~------------~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--------  495 (615)
T TIGR00990       436 HIQLGVTQYKEGSIASSMATFRRCKKNFPEA------------PDVYNYYGELLLDQNKFDEAIEKFDTAIE--------  495 (615)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHccCHHHHHHHHHHHHh--------
Confidence            9999999999999999999999999988876            67888999999999999999999999986        


Q ss_pred             cChhhHH------HHHHHHHHHHH-hhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHH
Q 004249          489 FNHEEHR------LLIIDLCKTLA-SLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMV  561 (765)
Q Consensus       489 ~~~~~~~------~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l  561 (765)
                       ..|.+.      ..+...+.++. ..|++++|+.++++++.+.    |++...+..++. ++...|++++|+..|++++
T Consensus       496 -l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~----p~~~~a~~~la~-~~~~~g~~~eAi~~~e~A~  569 (615)
T TIGR00990       496 -LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID----PECDIAVATMAQ-LLLQQGDVDEALKLFERAA  569 (615)
T ss_pred             -cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC----CCcHHHHHHHHH-HHHHccCHHHHHHHHHHHH
Confidence             333221      12223333343 4799999999999999987    666666666666 9999999999999999999


Q ss_pred             HhCCCchh
Q 004249          562 KLHPHRLT  569 (765)
Q Consensus       562 ~~~p~~~~  569 (765)
                      ++.+....
T Consensus       570 ~l~~~~~e  577 (615)
T TIGR00990       570 ELARTEGE  577 (615)
T ss_pred             HHhccHHH
Confidence            99876544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=3.6e-34  Score=315.59  Aligned_cols=444  Identities=14%  Similarity=0.012  Sum_probs=355.8

Q ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249          125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV  204 (765)
Q Consensus       125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  204 (765)
                      ...+..+|..++..|++++|+..|.+++...|+ +..+..+|.+|..+|++++|+..++++++++|++..++..+|.++.
T Consensus       127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            345778999999999999999999999999996 7789999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 004249          205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLK  284 (765)
Q Consensus       205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~  284 (765)
                      .+|++++|+..|..+....+.+......+...+..    ..+.......++..|.+..  .+..++..+. ......+..
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~--~~~~~~~~~~-~~~~~~~~~  278 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLP--SVTFVGNYLQ-SFRPKPRPA  278 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCC--CHHHHHHHHH-HccCCcchh
Confidence            99999999999988877766554322222221111    3455666777777877765  3445555442 222222222


Q ss_pred             HHHHHHHHhcCCCCccHHHHHHHHHHH---HhcCChhHHHHHHHhhcccC--CCChHHHHHHHHHHHHccccHHHHHHHH
Q 004249          285 HIELVDLVYYSGKELLLALKIKAGICH---IQLGNTDKAEILLTAIHWEN--VSDHAESINEIADLFKNRELYSTALKYY  359 (765)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~  359 (765)
                      .+......    .+.....+..++...   ...+++++|+..|++++...  .+....++..+|.++...|++++|+..|
T Consensus       279 ~~~~~~~~----~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~  354 (615)
T TIGR00990       279 GLEDSNEL----DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL  354 (615)
T ss_pred             hhhccccc----ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            23333222    222233334444332   23478999999999998643  3667788999999999999999999999


Q ss_pred             HHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccc
Q 004249          360 HMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKY  439 (765)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  439 (765)
                      ++++.+  +|..+..|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+.
T Consensus       355 ~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~  432 (615)
T TIGR00990       355 SKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF  432 (615)
T ss_pred             HHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence            999999  899999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             cCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 004249          440 VNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIIN  519 (765)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  519 (765)
                                  ..++..+|.++...|++++|+..+.+++.         ..|.++.++..+|.++...|++++|+..|+
T Consensus       433 ------------~~~~~~la~~~~~~g~~~eA~~~~~~al~---------~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~  491 (615)
T TIGR00990       433 ------------IFSHIQLGVTQYKEGSIASSMATFRRCKK---------NFPEAPDVYNYYGELLLDQNKFDEAIEKFD  491 (615)
T ss_pred             ------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------hCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence                        56788999999999999999999999986         678899999999999999999999999999


Q ss_pred             HHHHhccCCCCch--HHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 004249          520 LILKLGYGKFPVE--KEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRA  597 (765)
Q Consensus       520 ~al~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  597 (765)
                      +++.+.|...+..  ...+...+..++...|++++|...+++++..+|++..+                           
T Consensus       492 ~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a---------------------------  544 (615)
T TIGR00990       492 TAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIA---------------------------  544 (615)
T ss_pred             HHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH---------------------------
Confidence            9999985422211  12233333323444799999999999999988876433                           


Q ss_pred             hcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChH
Q 004249          598 KYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPL  638 (765)
Q Consensus       598 ~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~  638 (765)
                              +..+|.++...|++++|+..|++++++.+....
T Consensus       545 --------~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e  577 (615)
T TIGR00990       545 --------VATMAQLLLQQGDVDEALKLFERAAELARTEGE  577 (615)
T ss_pred             --------HHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence                    233578888899999999999999999887544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=1.2e-29  Score=277.95  Aligned_cols=337  Identities=12%  Similarity=-0.001  Sum_probs=314.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 004249           94 MLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG  173 (765)
Q Consensus        94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  173 (765)
                      +..-+..+.+.|++++|+.+++.++...|.++.+++.+|.+....|++++|+..|++++..+|+++.++..+|.++...|
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g  124 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK  124 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence            34455778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249          174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDY  253 (765)
Q Consensus       174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  253 (765)
                      ++++|+..|++++..+|+++.++..++.++...|++++|+..+++++...|+++.++..++ .+...|++++|+..++++
T Consensus       125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~  203 (656)
T PRK15174        125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARAL  203 (656)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998887664 478999999999999999


Q ss_pred             HhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhH----HHHHHHhhcc
Q 004249          254 LKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDK----AEILLTAIHW  329 (765)
Q Consensus       254 ~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~  329 (765)
                      +...|..... ....++.++...|++++|+..+++++..    .|....++..+|.++...|++++    |+..|++++.
T Consensus       204 l~~~~~~~~~-~~~~l~~~l~~~g~~~eA~~~~~~al~~----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~  278 (656)
T PRK15174        204 LPFFALERQE-SAGLAVDTLCAVGKYQEAIQTGESALAR----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ  278 (656)
T ss_pred             HhcCCCcchh-HHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence            9987644332 3456788999999999999999999998    67788999999999999999986    8999999988


Q ss_pred             cCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHH
Q 004249          330 ENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDAR  409 (765)
Q Consensus       330 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  409 (765)
                      .. |+++.++..+|.++...|++++|+..+++++..  .|+++.++..+|.++...|++++|+..|++++..+|.+...+
T Consensus       279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~  355 (656)
T PRK15174        279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN  355 (656)
T ss_pred             hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence            77 788999999999999999999999999999999  999999999999999999999999999999999999998878


Q ss_pred             HHHHHHHHHcCCHHHHHHhcCCCCCccccc
Q 004249          410 LTLASLLLEDAKDEEAISLLTPPMSLENKY  439 (765)
Q Consensus       410 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  439 (765)
                      ..++.++...|++++|+..|++++...|+.
T Consensus       356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~  385 (656)
T PRK15174        356 RYAAAALLQAGKTSEAESVFEHYIQARASH  385 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence            888999999999999999999999988876

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=100.00  E-value=8.6e-30  Score=285.41  Aligned_cols=436  Identities=13%  Similarity=0.031  Sum_probs=313.0

Q ss_pred             CCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH
Q 004249           84 KKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWK  163 (765)
Q Consensus        84 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~  163 (765)
                      ..++++....-+.  .++...|++++|+..+.++...+|....++..+|.++...|++++|+..|++++..+|.++.++.
T Consensus        10 ~~~~~~~~~~d~~--~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~   87 (765)
T PRK10049         10 KSALSNNQIADWL--QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR   87 (765)
T ss_pred             ccCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3444444333222  45778999999999999998888888888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 004249          164 LIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQI  243 (765)
Q Consensus       164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  243 (765)
                      .++.++...|++++|+..+++++...|+++. +..+|.++...|++++|+..++++++..|+++.++..++.++...|..
T Consensus        88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~  166 (765)
T PRK10049         88 GLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLS  166 (765)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Confidence            9999999999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCh---
Q 004249          244 ESSVDILEDYLKGHPTEADF---GVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNT---  317 (765)
Q Consensus       244 ~~A~~~~~~~~~~~p~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---  317 (765)
                      ++|+..++++.. .|+....   .....+..+....+                                 ....+++   
T Consensus       167 e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~---------------------------------~~~~~r~~~a  212 (765)
T PRK10049        167 APALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPT---------------------------------RSEKERYAIA  212 (765)
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccc---------------------------------cChhHHHHHH
Confidence            999998887765 5542110   00001111111000                                 0011111   


Q ss_pred             hHHHHHHHhhccc---CCCC---hHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHhccHHH
Q 004249          318 DKAEILLTAIHWE---NVSD---HAESINEIADLFKNRELYSTALKYYHMLEANAGVHND-GCLHLKIAECSLALKEREK  390 (765)
Q Consensus       318 ~~A~~~~~~~~~~---~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~  390 (765)
                      ++|+..++.++..   .+..   ...+.......+...|++++|+..|++++..  .+.. ..+...+|.++...|++++
T Consensus       213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~--~~~~P~~a~~~la~~yl~~g~~e~  290 (765)
T PRK10049        213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE--GQIIPPWAQRWVASAYLKLHQPEK  290 (765)
T ss_pred             HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHhcCCcHH
Confidence            3444444444322   1111   1111222112234556677777777766655  2221 1223334666777777777


Q ss_pred             HHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcc---cchhhhhhhHHHHHHHHHHH
Q 004249          391 SIIYFYKALQILEDN----IDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSD---KTHAWWLNIRIKIKLCRIYK  463 (765)
Q Consensus       391 A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~  463 (765)
                      |+..|++++..+|.+    ......++.++.+.|++++|+..++++....|......   ...|......+...++.++.
T Consensus       291 A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~  370 (765)
T PRK10049        291 AQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK  370 (765)
T ss_pred             HHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH
Confidence            777777766666554    23455566666667777777777766666554320000   00000011356778999999


Q ss_pred             hcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhc
Q 004249          464 AKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQI  543 (765)
Q Consensus       464 ~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  543 (765)
                      ..|++++|++.+.+++.         ..|++..++..+|.++...|++++|++.+++++.+.    |+++...+..+. +
T Consensus       371 ~~g~~~eA~~~l~~al~---------~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~----Pd~~~l~~~~a~-~  436 (765)
T PRK10049        371 YSNDLPQAEMRARELAY---------NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE----PRNINLEVEQAW-T  436 (765)
T ss_pred             HcCCHHHHHHHHHHHHH---------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCChHHHHHHHH-H
Confidence            99999999999999986         678999999999999999999999999999999998    788887777777 9


Q ss_pred             ccccCChhhHHHHHHHHHHhCCCchhhhH
Q 004249          544 PCNTTDPKLWFDGVRFMVKLHPHRLTTWN  572 (765)
Q Consensus       544 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  572 (765)
                      +...|++++|...++++++..|+++.+..
T Consensus       437 al~~~~~~~A~~~~~~ll~~~Pd~~~~~~  465 (765)
T PRK10049        437 ALDLQEWRQMDVLTDDVVAREPQDPGVQR  465 (765)
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            99999999999999999999999986644

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=100.00  E-value=1.9e-29  Score=282.68  Aligned_cols=370  Identities=12%  Similarity=0.028  Sum_probs=293.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI  170 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  170 (765)
                      ...+...|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|+++. +..+|.++.
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~  127 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK  127 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence            3346677888999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH-----Hc
Q 004249          171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE-----ALKMGAKLYQ-----KS  240 (765)
Q Consensus       171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~-----~~  240 (765)
                      ..|++++|+..++++++..|+++.++..++.++...|..+.|+..++++.. .|....     ....+..+..     ..
T Consensus       128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~  206 (765)
T PRK10049        128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEK  206 (765)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChh
Confidence            999999999999999999999999999999999999999999999998775 554311     1222223332     22


Q ss_pred             CCH---HHHHHHHHHHHhcCCCCCCHH-----HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 004249          241 GQI---ESSVDILEDYLKGHPTEADFG-----VIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHI  312 (765)
Q Consensus       241 g~~---~~A~~~~~~~~~~~p~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  312 (765)
                      +++   ++|+..++.+++..|.++...     +.......+...|++++|+..|++++.. .  .+.+..+...++.++.
T Consensus       207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~-~--~~~P~~a~~~la~~yl  283 (765)
T PRK10049        207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE-G--QIIPPWAQRWVASAYL  283 (765)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-C--CCCCHHHHHHHHHHHH
Confidence            334   778889998887655554421     1111122346778899999999998776 1  1224445555688889


Q ss_pred             hcCChhHHHHHHHhhcccCCCCh----HHHHHHHHHHHHccccHHHHHHHHHHHHhccCCC-------------CC--HH
Q 004249          313 QLGNTDKAEILLTAIHWENVSDH----AESINEIADLFKNRELYSTALKYYHMLEANAGVH-------------ND--GC  373 (765)
Q Consensus       313 ~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~--~~  373 (765)
                      ..|++++|+..|++++... |.+    ......++.++...|++++|+..++++...  .|             ++  ..
T Consensus       284 ~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~--~P~~~~~~~~~~~~p~~~~~~  360 (765)
T PRK10049        284 KLHQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHTINN--SPPFLRLYGSPTSIPNDDWLQ  360 (765)
T ss_pred             hcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--CCceEeecCCCCCCCCchHHH
Confidence            9999999999999887654 333    355667777888889999999999888876  44             22  34


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhH
Q 004249          374 LHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIR  453 (765)
Q Consensus       374 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (765)
                      ++..++.++...|++++|+..+++++...|.+..++..+|.++...|++++|++.+++++..+|+.            ..
T Consensus       361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~------------~~  428 (765)
T PRK10049        361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN------------IN  428 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------------hH
Confidence            667788888888888888888888888888888888888888888888888888888888887776            56


Q ss_pred             HHHHHHHHHHhcchhHHHHHhhHHHHh
Q 004249          454 IKIKLCRIYKAKGMIEGFVDMLLPLVC  480 (765)
Q Consensus       454 ~~~~~a~~~~~~~~~~~A~~~~~~~~~  480 (765)
                      +++.+|.++...|++++|...+..++.
T Consensus       429 l~~~~a~~al~~~~~~~A~~~~~~ll~  455 (765)
T PRK10049        429 LEVEQAWTALDLQEWRQMDVLTDDVVA  455 (765)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            677777777777777777777777775

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=8.8e-28  Score=275.80  Aligned_cols=620  Identities=12%  Similarity=0.057  Sum_probs=451.3

Q ss_pred             HHHHHHhhcCCCcchhhhhccccccccCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC-CchHH
Q 004249           50 RFEAIIFGFGSRKRSREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEE-LPNSY  128 (765)
Q Consensus        50 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~  128 (765)
                      .++.+...+...|+..++...+.++...        ..+|+...+......+...+.++.|..++..+++..+. +....
T Consensus        53 ~~n~~i~~l~~~g~~~~A~~l~~~m~~~--------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  124 (857)
T PLN03077         53 DSNSQLRALCSHGQLEQALKLLESMQEL--------RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG  124 (857)
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHhc--------CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHH
Confidence            3455666778888888887666322221        22233333333334456677788888888777766553 23455


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC---------------
Q 004249          129 HILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA--DPN---------------  191 (765)
Q Consensus       129 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~---------------  191 (765)
                      ..+...|.+.|+.+.|...|.+...   .+...|..+...|.+.|++++|+..|.++...  .|+               
T Consensus       125 n~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~  201 (857)
T PLN03077        125 NAMLSMFVRFGELVHAWYVFGKMPE---RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP  201 (857)
T ss_pred             HHHHHHHHhCCChHHHHHHHhcCCC---CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence            5566667777888888877776643   34566777777788888888888888777643  232               


Q ss_pred             -------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249          192 -------------------DFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILED  252 (765)
Q Consensus       192 -------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  252 (765)
                                         +..++..+...|.+.|+++.|...|+++..   .+...|..+...|.+.|++++|+.+|.+
T Consensus       202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~  278 (857)
T PLN03077        202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFT  278 (857)
T ss_pred             chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence                               233456667777888888888888887643   3456677888888888888888888888


Q ss_pred             HHhc--CCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhccc
Q 004249          253 YLKG--HPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWE  330 (765)
Q Consensus       253 ~~~~--~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  330 (765)
                      +...  .|+..   .+..+...+...|+.+.|.+++..+.+.   ....+..++..+...|.+.|++++|.++|+++.  
T Consensus       279 M~~~g~~Pd~~---ty~~ll~a~~~~g~~~~a~~l~~~~~~~---g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--  350 (857)
T PLN03077        279 MRELSVDPDLM---TITSVISACELLGDERLGREMHGYVVKT---GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--  350 (857)
T ss_pred             HHHcCCCCChh---HHHHHHHHHHhcCChHHHHHHHHHHHHh---CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--
Confidence            7664  34332   4667777888888888888888887765   133456677888888999999999999999874  


Q ss_pred             CCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcC-CCHHHH
Q 004249          331 NVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILE-DNIDAR  409 (765)
Q Consensus       331 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~  409 (765)
                        ..+...|..+...|.+.|++++|+.+|+++...+..|+. ..+..+-..+...|+++.|.+.+..+.+... .+..++
T Consensus       351 --~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~  427 (857)
T PLN03077        351 --TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA  427 (857)
T ss_pred             --CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHH
Confidence              234667888999999999999999999988776545654 4555566688889999999999999888753 345677


Q ss_pred             HHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhccccccc
Q 004249          410 LTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETF  489 (765)
Q Consensus       410 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~  489 (765)
                      ..+...|.+.|+.++|.++|+++.+.+.               ..|..+...|...|+.++|+..|.+++..        
T Consensus       428 n~Li~~y~k~g~~~~A~~vf~~m~~~d~---------------vs~~~mi~~~~~~g~~~eA~~lf~~m~~~--------  484 (857)
T PLN03077        428 NALIEMYSKCKCIDKALEVFHNIPEKDV---------------ISWTSIIAGLRLNNRCFEALIFFRQMLLT--------  484 (857)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhCCCCCe---------------eeHHHHHHHHHHCCCHHHHHHHHHHHHhC--------
Confidence            7899999999999999999998776332               34677888889999999999999888742        


Q ss_pred             ChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchh
Q 004249          490 NHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLT  569 (765)
Q Consensus       490 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~  569 (765)
                      ..| +...+..+-.++.+.|..+.+.+++..+++....   .+. ..+..+...|.+.|+.++|...|...    +.+..
T Consensus       485 ~~p-d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~---~~~-~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~  555 (857)
T PLN03077        485 LKP-NSVTLIAALSACARIGALMCGKEIHAHVLRTGIG---FDG-FLPNALLDLYVRCGRMNYAWNQFNSH----EKDVV  555 (857)
T ss_pred             CCC-CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC---ccc-eechHHHHHHHHcCCHHHHHHHHHhc----CCChh
Confidence            223 4445666667888899999999999988886632   222 23334445888999999999999886    56788


Q ss_pred             hhHHHHHHHhhhhhhhhHHHHHHHHHHHh--cCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCCh--HHHHHHHH
Q 004249          570 TWNRYYKLVSRFEKIFSKHAKLLRNVRAK--YRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENP--LINLCVGT  645 (765)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~--~~~~~l~~  645 (765)
                      .|+.+...+...|+. +.+...+.+..+.  .|+... +..+-..+...|..++|...|....+..+-.|  ..+.++..
T Consensus       556 s~n~lI~~~~~~G~~-~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~  633 (857)
T PLN03077        556 SWNILLTGYVAHGKG-SMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD  633 (857)
T ss_pred             hHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            999999999888876 6788888877654  454443 44444568889999999999998875433332  44555555


Q ss_pred             HHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHHhchHHHHHHHHHHHHhhhhccCCCCCCCCCCC
Q 004249          646 ALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHME  725 (765)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~~~~~~~~~~~~~  725 (765)
                      .+...+          .+.+|..++++-. +.| +..++-.+-.++..-|+.+.|....++++++.|++           
T Consensus       634 ~l~r~G----------~~~eA~~~~~~m~-~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~-----------  690 (857)
T PLN03077        634 LLGRAG----------KLTEAYNFINKMP-ITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNS-----------  690 (857)
T ss_pred             HHHhCC----------CHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----------
Confidence            554333          3567778877642 444 35677788888888999999999999999999854           


Q ss_pred             CCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 004249          726 DWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRD  761 (765)
Q Consensus       726 ~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~k  761 (765)
                                ...+..|+.+|...|++++|.++.+.
T Consensus       691 ----------~~~y~ll~n~ya~~g~~~~a~~vr~~  716 (857)
T PLN03077        691 ----------VGYYILLCNLYADAGKWDEVARVRKT  716 (857)
T ss_pred             ----------cchHHHHHHHHHHCCChHHHHHHHHH
Confidence                      45677899999999999999998765

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=5.3e-29  Score=272.83  Aligned_cols=385  Identities=8%  Similarity=-0.027  Sum_probs=330.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH
Q 004249           99 SLHYALGRYEEAISVLHEVIRLEE---ELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDT  175 (765)
Q Consensus        99 ~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~  175 (765)
                      ..++++.+|+.-.-++...-+...   ++..-....+..+...|++++|+..+...+...|.++.++..+|.+....|++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~   92 (656)
T PRK15174         13 TTLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQP   92 (656)
T ss_pred             hhhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCH
Confidence            456778888877766666544332   23344566777888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004249          176 TWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLK  255 (765)
Q Consensus       176 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  255 (765)
                      ++|+..+++++..+|+++.++..+|.++...|++++|+..|++++...|+++.++..++.++...|++++|+..+++++.
T Consensus        93 ~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~  172 (656)
T PRK15174         93 DAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ  172 (656)
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCCh
Q 004249          256 GHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDH  335 (765)
Q Consensus       256 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  335 (765)
                      ..|++..  .+..++ .+...|++++|+..+++++...+   .........++.++...|++++|+..+++++... |.+
T Consensus       173 ~~P~~~~--a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~---~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~  245 (656)
T PRK15174        173 EVPPRGD--MIATCL-SFLNKSRLPEDHDLARALLPFFA---LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDG  245 (656)
T ss_pred             hCCCCHH--HHHHHH-HHHHcCCHHHHHHHHHHHHhcCC---CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC
Confidence            9998776  444443 47889999999999999887722   1223344566788889999999999999998776 788


Q ss_pred             HHHHHHHHHHHHccccHHH----HHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHH
Q 004249          336 AESINEIADLFKNRELYST----ALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLT  411 (765)
Q Consensus       336 ~~~~~~la~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  411 (765)
                      +.++..+|.++...|++++    |+..|++++..  .|+++.++..+|.++...|++++|+..+++++..+|+++.++..
T Consensus       246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~  323 (656)
T PRK15174        246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAM  323 (656)
T ss_pred             HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            9999999999999999986    89999999998  89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccCh
Q 004249          412 LASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNH  491 (765)
Q Consensus       412 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~  491 (765)
                      ++.++...|++++|+..++++...+|..            ......++.++...|++++|+..|.+++.         ..
T Consensus       324 La~~l~~~G~~~eA~~~l~~al~~~P~~------------~~~~~~~a~al~~~G~~deA~~~l~~al~---------~~  382 (656)
T PRK15174        324 YARALRQVGQYTAASDEFVQLAREKGVT------------SKWNRYAAAALLQAGKTSEAESVFEHYIQ---------AR  382 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCccc------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------hC
Confidence            9999999999999999999998877765            34455678889999999999999998886         44


Q ss_pred             hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhc
Q 004249          492 EEHRLLIIDLCKTLASLHRYEDAIKIINLILKLG  525 (765)
Q Consensus       492 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  525 (765)
                      |++.            ...+++|...+.+++...
T Consensus       383 P~~~------------~~~~~ea~~~~~~~~~~~  404 (656)
T PRK15174        383 ASHL------------PQSFEEGLLALDGQISAV  404 (656)
T ss_pred             hhhc------------hhhHHHHHHHHHHHHHhc
Confidence            5543            356678888888888766

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.97  E-value=4.8e-25  Score=218.32  Aligned_cols=554  Identities=12%  Similarity=0.038  Sum_probs=408.0

Q ss_pred             CCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249          105 GRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSE  184 (765)
Q Consensus       105 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  184 (765)
                      ++..+|..+++.+.+.+|.+|..|..-+.+-...|++..|.....+..+..|.+.++|..-.    ++...+.|..+.-.
T Consensus       265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA~  340 (913)
T KOG0495|consen  265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVAN  340 (913)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999888887643    33445556666666


Q ss_pred             HHhcCCCCHHHHHHHHH---------------------------HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004249          185 AVKADPNDFKLKFHLAS---------------------------LYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLY  237 (765)
Q Consensus       185 al~~~p~~~~~~~~la~---------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  237 (765)
                      ++...|.++..|+.-+.                           ......+.+.|...+.++++..|.+.+.|..++++ 
T Consensus       341 Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLwlAlarL-  419 (913)
T KOG0495|consen  341 AVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALARL-  419 (913)
T ss_pred             HHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHHHH-
Confidence            66666665555433332                           22334556667788888888888887777666554 


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-----------------------
Q 004249          238 QKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYY-----------------------  294 (765)
Q Consensus       238 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------------------  294 (765)
                         .-|+.|...+.++-+.-|.++.  +|..-+.+-...|+.+....++.+.+....                       
T Consensus       420 ---etYenAkkvLNkaRe~iptd~~--IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags  494 (913)
T KOG0495|consen  420 ---ETYENAKKVLNKAREIIPTDRE--IWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS  494 (913)
T ss_pred             ---HHHHHHHHHHHHHHhhCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence               5688888899999888888887  777888888888888887777777654321                       


Q ss_pred             ---------------CCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHH
Q 004249          295 ---------------SGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYY  359 (765)
Q Consensus       295 ---------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  359 (765)
                                     ....+....|..-+..+.+.+-++-|+.+|..+++.+ |....+|...+..-...|..++-..+|
T Consensus       495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~All  573 (913)
T KOG0495|consen  495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALL  573 (913)
T ss_pred             hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence                           1122233344555556666777777777777777766 666777777777777778888888888


Q ss_pred             HHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccc
Q 004249          360 HMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKY  439 (765)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  439 (765)
                      ++++..  .|.....|...+..+...|+...|...+..+++.+|++.++|+.-..+.....+++.|..+|.++....+..
T Consensus       574 qkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe  651 (913)
T KOG0495|consen  574 QKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE  651 (913)
T ss_pred             HHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence            888877  787778888888888888888888888888888888888888888888888888888888888888777766


Q ss_pred             cCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 004249          440 VNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIIN  519 (765)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  519 (765)
                                   ++|+..+.+...+++.++|++.+..+++         ..|+....++.+|+++.++++.+.|...|.
T Consensus       652 -------------Rv~mKs~~~er~ld~~eeA~rllEe~lk---------~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~  709 (913)
T KOG0495|consen  652 -------------RVWMKSANLERYLDNVEEALRLLEEALK---------SFPDFHKLWLMLGQIEEQMENIEMAREAYL  709 (913)
T ss_pred             -------------hhhHHHhHHHHHhhhHHHHHHHHHHHHH---------hCCchHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence                         7788888888888888888888887776         667788888888888888888888888888


Q ss_pred             HHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhc
Q 004249          520 LILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKY  599 (765)
Q Consensus       520 ~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  599 (765)
                      ..++.+    |..+..+.. +..+-.+.|+.-.|...+.++.-.+|.+...|.....+-.+.|.. +.+...+.++++.+
T Consensus       710 ~G~k~c----P~~ipLWll-LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~-~~a~~lmakALQec  783 (913)
T KOG0495|consen  710 QGTKKC----PNSIPLWLL-LAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNK-EQAELLMAKALQEC  783 (913)
T ss_pred             hccccC----CCCchHHHH-HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCH-HHHHHHHHHHHHhC
Confidence            888877    444333333 333777778888888888888888888888888877777777765 45566667778888


Q ss_pred             CCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCC
Q 004249          600 RDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAEN  679 (765)
Q Consensus       600 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  679 (765)
                      |.+.-.+.-.-...-.-+.    ...+..|++...+||-+.+.+|..+....          .+.++.+.|.+..++.|+
T Consensus       784 p~sg~LWaEaI~le~~~~r----kTks~DALkkce~dphVllaia~lfw~e~----------k~~kar~Wf~Ravk~d~d  849 (913)
T KOG0495|consen  784 PSSGLLWAEAIWLEPRPQR----KTKSIDALKKCEHDPHVLLAIAKLFWSEK----------KIEKAREWFERAVKKDPD  849 (913)
T ss_pred             CccchhHHHHHHhccCccc----chHHHHHHHhccCCchhHHHHHHHHHHHH----------HHHHHHHHHHHHHccCCc
Confidence            8775443222121111222    22334456666677777777776665333          356777788888888887


Q ss_pred             CchHHHhHHHHHHHhchHHHHHHHHHHHHhhhhc
Q 004249          680 SQEALYNIARAYHHVGLVSLAASYYEKVLAMYQK  713 (765)
Q Consensus       680 ~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~  713 (765)
                      .-.++-++=+.+.+.|..+.-.+.|.+...-.|.
T Consensus       850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~  883 (913)
T KOG0495|consen  850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT  883 (913)
T ss_pred             cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence            7777777777788888877888888887777764

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.97  E-value=1e-26  Score=254.12  Aligned_cols=461  Identities=11%  Similarity=0.001  Sum_probs=368.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL  169 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  169 (765)
                      .+...+.++.+.++.|+++.|+..|+++++.+|.++.+...++.++...|+.++|+.++++++...|........+|.++
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly  112 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY  112 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            44566788899999999999999999999999999655448888999999999999999999944455556666668899


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004249          170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDI  249 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  249 (765)
                      ...|++++|+..|+++++.+|+++.++..++.++...++.++|+..++++...+|.+... ..++.++...++..+|+..
T Consensus       113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~  191 (822)
T PRK14574        113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQA  191 (822)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999986654 5667777678888789999


Q ss_pred             HHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC------------Ch
Q 004249          250 LEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLG------------NT  317 (765)
Q Consensus       250 ~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~  317 (765)
                      ++++++.+|++..  ++..+..++...|-...|.+...+-...+.+.  ....+....+.-..+.+            -.
T Consensus       192 ~ekll~~~P~n~e--~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~--~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~  267 (822)
T PRK14574        192 SSEAVRLAPTSEE--VLKNHLEILQRNRIVEPALRLAKENPNLVSAE--HYRQLERDAAAEQVRMAVLPTRSETERFDIA  267 (822)
T ss_pred             HHHHHHhCCCCHH--HHHHHHHHHHHcCCcHHHHHHHHhCccccCHH--HHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence            9999999999988  67799999999999999998887654442211  00111111111111111            23


Q ss_pred             hHHHHHHHhhcc---cCCCCh---HHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHH
Q 004249          318 DKAEILLTAIHW---ENVSDH---AESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKS  391 (765)
Q Consensus       318 ~~A~~~~~~~~~---~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  391 (765)
                      +.|+..++.++.   ..++..   ..+....-.++...|++.+++..|+.+.... .+--+.+....|..|...+++++|
T Consensus       268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~-~~~P~y~~~a~adayl~~~~P~kA  346 (822)
T PRK14574        268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG-YKMPDYARRWAASAYIDRRLPEKA  346 (822)
T ss_pred             HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHhcCCcHHH
Confidence            456666666654   332222   2344455567788999999999999887653 233445777889999999999999


Q ss_pred             HHHHHHHHHHcC------CCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCcccccc-----CcccchhhhhhhHHHHHHHH
Q 004249          392 IIYFYKALQILE------DNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYV-----NSDKTHAWWLNIRIKIKLCR  460 (765)
Q Consensus       392 ~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~a~  460 (765)
                      ...|+.++...|      .+......|...+...+++++|..++++..+..|...     ....+++.|.  .....++.
T Consensus       347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~--~~~~l~a~  424 (822)
T PRK14574        347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI--EGQTLLVQ  424 (822)
T ss_pred             HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH--HHHHHHHH
Confidence            999999988653      2334457789999999999999999999887655211     1134556665  56778899


Q ss_pred             HHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Q 004249          461 IYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLG  540 (765)
Q Consensus       461 ~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  540 (765)
                      ++...|++.+|.+.+.+++.         ..|.+..+.+.+|.++...|.+.+|...++.++.+.    |.+.......+
T Consensus       425 ~~~~~gdl~~Ae~~le~l~~---------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~----P~~~~~~~~~~  491 (822)
T PRK14574        425 SLVALNDLPTAQKKLEDLSS---------TAPANQNLRIALASIYLARDLPRKAEQELKAVESLA----PRSLILERAQA  491 (822)
T ss_pred             HHHHcCCHHHHHHHHHHHHH---------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC----CccHHHHHHHH
Confidence            99999999999999999987         779999999999999999999999999999999887    77776666666


Q ss_pred             hhcccccCChhhHHHHHHHHHHhCCCchhhhH
Q 004249          541 AQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWN  572 (765)
Q Consensus       541 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  572 (765)
                      . ++...|++.+|....+.++..+|++..+-.
T Consensus       492 ~-~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~  522 (822)
T PRK14574        492 E-TAMALQEWHQMELLTDDVISRSPEDIPSQE  522 (822)
T ss_pred             H-HHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence            6 889999999999999999999999986543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.9e-27  Score=226.57  Aligned_cols=413  Identities=11%  Similarity=0.015  Sum_probs=320.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI  170 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  170 (765)
                      ...+-.+|+.+++.|+|++||.+|.+++...|+.+..|.+++-||...|++++.++...++++++|+...+++..+.++.
T Consensus       115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E  194 (606)
T KOG0547|consen  115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE  194 (606)
T ss_pred             HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence            34455779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCH----------------HHHHHHHHHHHHhCCCC-------
Q 004249          171 EQGDTTWAMSCLSEAVKAD-PNDFKLKFHLASLYVELGNF----------------QRAADVYRQMVQLCPEN-------  226 (765)
Q Consensus       171 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~----------------~~A~~~~~~al~~~p~~-------  226 (765)
                      .+|++.+|+.-..-..-.. -.+......+-.++-.+|.-                ..-+..|-....-+|..       
T Consensus       195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~  274 (606)
T KOG0547|consen  195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD  274 (606)
T ss_pred             hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence            9999999987654332211 12222222222222222210                01122222222222111       


Q ss_pred             -HHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCC-----C------HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004249          227 -IEALKMGAKLYQKS---GQIESSVDILEDYLKGHPTEA-----D------FGVIDLLASMLVQMNAYDRVLKHIELVDL  291 (765)
Q Consensus       227 -~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~p~~~-----~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  291 (765)
                       .++...-+.-+...   ..|..|...+.+.........     +      ..++...|..++-.|++-.|...|+.++.
T Consensus       275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~  354 (606)
T KOG0547|consen  275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK  354 (606)
T ss_pred             cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence             11111111111122   257777777766543321111     1      33566778888888999999999999999


Q ss_pred             HhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCC
Q 004249          292 VYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHND  371 (765)
Q Consensus       292 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  371 (765)
                      +    ++.....++.++.+|...++.++-...|.++...+ |.++++|+..|.+++-.+++++|+.-|++++.+  +|++
T Consensus       355 l----~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~  427 (606)
T KOG0547|consen  355 L----DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPEN  427 (606)
T ss_pred             c----CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--Chhh
Confidence            9    67777779999999999999999999999998877 899999999999999999999999999999999  9999


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhh
Q 004249          372 GCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLN  451 (765)
Q Consensus       372 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (765)
                      ...+..++.+..++++++++...|+.+.+..|..++++...|.++..+++|+.|++.|..++++.|....      .+.+
T Consensus       428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~------~~v~  501 (606)
T KOG0547|consen  428 AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL------IIVN  501 (606)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc------cccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999888311      0001


Q ss_pred             hHHHHHHHHHHH-hcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhc
Q 004249          452 IRIKIKLCRIYK-AKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLG  525 (765)
Q Consensus       452 ~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  525 (765)
                      +..+...|.+.. =.+++..|++.+.+++.         .+|....++..+|.+..++|+.++|+++|+++..+.
T Consensus       502 ~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e---------~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA  567 (606)
T KOG0547|consen  502 AAPLVHKALLVLQWKEDINQAENLLRKAIE---------LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA  567 (606)
T ss_pred             chhhhhhhHhhhchhhhHHHHHHHHHHHHc---------cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            111222222211 23889999999999987         899999999999999999999999999999999877

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.3e-27  Score=227.27  Aligned_cols=409  Identities=13%  Similarity=0.061  Sum_probs=318.8

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE  205 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  205 (765)
                      ..+...|.-++..|+|++|+++|..++.+.|+.+..|.+++-||...|+|++.++...++++++|+...+++..+..+..
T Consensus       116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~  195 (606)
T KOG0547|consen  116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ  195 (606)
T ss_pred             HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHH-----------------HHHHHHhcCCC----CCCH
Q 004249          206 LGNFQRAADVYRQMVQLCP-ENIEALKMGAKLYQKSGQIESSVD-----------------ILEDYLKGHPT----EADF  263 (765)
Q Consensus       206 ~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~-----------------~~~~~~~~~p~----~~~~  263 (765)
                      +|++.+|+....-..-... .+......+-+++-.++. .++.+                 .|-..+.-+|.    +...
T Consensus       196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~-~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~  274 (606)
T KOG0547|consen  196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM-KKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD  274 (606)
T ss_pred             hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH-HHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence            9999999877654322211 122222222222222221 11111                 11111111111    0000


Q ss_pred             HHHHHHHHHHH--Hh---ccHHHHHHHHHHHHHHhcCCCCcc---------HHHHHHHHHHHHhcCChhHHHHHHHhhcc
Q 004249          264 GVIDLLASMLV--QM---NAYDRVLKHIELVDLVYYSGKELL---------LALKIKAGICHIQLGNTDKAEILLTAIHW  329 (765)
Q Consensus       264 ~~~~~l~~~~~--~~---~~~~~A~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  329 (765)
                      ...-.+...+.  ..   ..|..|...+.+...........+         ..++...|..++-.|+.-.|...|+.++.
T Consensus       275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~  354 (606)
T KOG0547|consen  275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK  354 (606)
T ss_pred             cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence            00111222111  11   256777777766554422111222         45677778889999999999999999998


Q ss_pred             cCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHH
Q 004249          330 ENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDAR  409 (765)
Q Consensus       330 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  409 (765)
                      .+ +.....|..++.+|....+.++-...|+++..+  +|+++.+|+.+|++++-++++++|+..|++++.++|++.-++
T Consensus       355 l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~  431 (606)
T KOG0547|consen  355 LD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAY  431 (606)
T ss_pred             cC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence            77 666777999999999999999999999999999  999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhccccccc
Q 004249          410 LTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETF  489 (765)
Q Consensus       410 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~  489 (765)
                      ..++.+..++++++++...|+.+....|..            +.++...|.++..++++++|++.|..++.         
T Consensus       432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~------------~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---------  490 (606)
T KOG0547|consen  432 IQLCCALYRQHKIAESMKTFEEAKKKFPNC------------PEVYNLFAEILTDQQQFDKAVKQYDKAIE---------  490 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------chHHHHHHHHHhhHHhHHHHHHHHHHHHh---------
Confidence            999999999999999999999999999888            78899999999999999999999999986         


Q ss_pred             Chhh------HHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHH
Q 004249          490 NHEE------HRLLIIDLCKTLAS-LHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVK  562 (765)
Q Consensus       490 ~~~~------~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~  562 (765)
                      ..|.      ++..+++-|.+..+ .+++..|++++++|+++.    |........++. +..++|+.++|+++|++++.
T Consensus       491 LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D----pkce~A~~tlaq-~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  491 LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD----PKCEQAYETLAQ-FELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC----chHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHH
Confidence            4455      55556665655544 589999999999999998    555555555655 89999999999999999987


Q ss_pred             hC
Q 004249          563 LH  564 (765)
Q Consensus       563 ~~  564 (765)
                      +-
T Consensus       566 lA  567 (606)
T KOG0547|consen  566 LA  567 (606)
T ss_pred             HH
Confidence            53

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.97  E-value=5.9e-25  Score=226.82  Aligned_cols=607  Identities=15%  Similarity=0.105  Sum_probs=401.0

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE  205 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  205 (765)
                      ..+...|...+..|++++|...+..+++.+|.++.+|+.||.+|..+|+.+++..++-.|-.++|.+.+.|..++....+
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~  219 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ  219 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence            45666677888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHhccHHHH
Q 004249          206 LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADF---GVIDLLASMLVQMNAYDRV  282 (765)
Q Consensus       206 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~~~l~~~~~~~~~~~~A  282 (765)
                      +|++.+|.-+|.++++..|.+....+..+.+|.+.|+...|...|.+++...|....-   ......+..+...++-+.|
T Consensus       220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a  299 (895)
T KOG2076|consen  220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA  299 (895)
T ss_pred             cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            9999999999999999999999999999999999999999999999999999832211   1223557778888888999


Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhccc---------------------------CCCCh
Q 004249          283 LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWE---------------------------NVSDH  335 (765)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------------------~~~~~  335 (765)
                      ++.++.++....  +.........++.+++....++.|..........                           ..+-+
T Consensus       300 ~~~le~~~s~~~--~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~  377 (895)
T KOG2076|consen  300 AKALEGALSKEK--DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD  377 (895)
T ss_pred             HHHHHHHHhhcc--ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence            999999988422  3445555667788888999999988777654320                           00111


Q ss_pred             HHH-HHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC-CHHHHHHHH
Q 004249          336 AES-INEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED-NIDARLTLA  413 (765)
Q Consensus       336 ~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~  413 (765)
                      ..+ ...++.+.++.++..+++..+..--... ..+.+..++.++.++...|++.+|+.+|..+....+. +...|+.+|
T Consensus       378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~-~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a  456 (895)
T KOG2076|consen  378 LRVIRLMICLVHLKERELLEALLHFLVEDNVW-VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA  456 (895)
T ss_pred             chhHhHhhhhhcccccchHHHHHHHHHHhcCC-hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence            223 5666666677778888877775443331 2356789999999999999999999999999987653 457899999


Q ss_pred             HHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhh
Q 004249          414 SLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEE  493 (765)
Q Consensus       414 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~  493 (765)
                      ++|..+|.+++|++.|++++...|+.            ..+...++.++..+|+.++|++.+.+....-..-...-.-+.
T Consensus       457 ~c~~~l~e~e~A~e~y~kvl~~~p~~------------~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~  524 (895)
T KOG2076|consen  457 RCYMELGEYEEAIEFYEKVLILAPDN------------LDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEP  524 (895)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCCc------------hhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccH
Confidence            99999999999999999999999998            678889999999999999999998875421000000001123


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccC---CCCch----------------HHHHHHHHhhcccc--------
Q 004249          494 HRLLIIDLCKTLASLHRYEDAIKIINLILKLGYG---KFPVE----------------KEELYFLGAQIPCN--------  546 (765)
Q Consensus       494 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~----------------~~~~~~~~~~~~~~--------  546 (765)
                      ...+....+.++.+.|+.++=+......+.....   -+|.+                ...+..+.. .-.+        
T Consensus       525 e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~-~~~k~~~~~~~~  603 (895)
T KOG2076|consen  525 ERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIR-AREKATDDNVME  603 (895)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHH-HHhccCchHHhh
Confidence            4557778888888888888744433332221100   00100                011111110 0000        


Q ss_pred             --cCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhc--CCCCC---ch-hhhhhhhhhhhh
Q 004249          547 --TTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKY--RDFVP---PI-IISGHQFTMISH  618 (765)
Q Consensus       547 --~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~---~~-~~~g~~~~~~~~  618 (765)
                        .++..+....+...+..+... .....+...+.+.+.. +.+...+...+...  -..+.   -+ ...-.+.+..++
T Consensus       604 ~~l~d~~~~~~~e~~~Lsiddwf-el~~e~i~~L~k~~r~-qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d  681 (895)
T KOG2076|consen  604 KALSDGTEFRAVELRGLSIDDWF-ELFRELILSLAKLQRV-QEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARD  681 (895)
T ss_pred             hcccchhhhhhhhhccCcHHHHH-HHHHHHHHHHHHHHhH-HHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCC
Confidence              011111222222222221100 0001111111221111 23333332222211  11111   11 222234456778


Q ss_pred             HHHHHHHHHHHHhh-----CCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCC-chHHHhHHHHHH
Q 004249          619 HQDAAREYLEAYKL-----LPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENS-QEALYNIARAYH  692 (765)
Q Consensus       619 ~~~A~~~~~~a~~~-----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~lg~~~~  692 (765)
                      +..|..+....+..     +|.-+...++ ...++....++         .--..++......++.+ +--.+-.|+...
T Consensus       682 ~~~a~~~lR~~i~~~~~~~~~~q~~l~n~-~~s~~~~~~q~---------v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~  751 (895)
T KOG2076|consen  682 PGDAFSYLRSVITQFQFYLDVYQLNLWNL-DFSYFSKYGQR---------VCYLRLIMRLLVKNKDDTPPLALIYGHNLF  751 (895)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHHHHHHH---------HHHHHHHHHHhccCccCCcceeeeechhHh
Confidence            88888887777766     4543333322 23333222111         11122223333333333 444555566777


Q ss_pred             HhchHHHHHHHHHHHHhhhhccCCCCCCC--------------C----CC------------CCCCCCccchhHHHHHHH
Q 004249          693 HVGLVSLAASYYEKVLAMYQKDCIIPGFP--------------D----HM------------EDWKPGHSDLRREAAYNL  742 (765)
Q Consensus       693 ~~g~~~~A~~~y~k~l~~~~~~~~~~~~~--------------~----~~------------~~~~~~~~~~~~ea~~nl  742 (765)
                      -.|-+--|+.+|-++....|++   |.+.              .    |.            .+.  -...-+.||.||+
T Consensus       752 ~~~s~~~Al~~y~ra~~~~pd~---Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~l--R~~~~~QEa~YNi  826 (895)
T KOG2076|consen  752 VNASFKHALQEYMRAFRQNPDS---PLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKEL--RRCEEKQEAFYNI  826 (895)
T ss_pred             hccchHHHHHHHHHHHHhCCCC---cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh--hccHHHHHHHHHH
Confidence            7777777777777777777764   2211              0    00            000  0112468999999


Q ss_pred             HHHHHhcCCHHHHHHHHHhhcCC
Q 004249          743 HLIYKKSGAVDLARQVLRDHCTF  765 (765)
Q Consensus       743 ~~iy~~~g~~~~A~~~l~k~l~~  765 (765)
                      |.+|.--|=.-.|+.+|+|+|-+
T Consensus       827 gRayh~~gl~~LA~~YYekvL~~  849 (895)
T KOG2076|consen  827 GRAYHQIGLVHLAVSYYEKVLEV  849 (895)
T ss_pred             HHHHHHcccHHHHHHHHHHHhCC
Confidence            99999999999999999999854

>PLN03077 Protein ECB2; Provisional

Probab=99.96  E-value=5e-25  Score=253.08  Aligned_cols=584  Identities=11%  Similarity=0.030  Sum_probs=397.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhh-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHHc
Q 004249           95 LGDASLHYALGRYEEAISVLHEVIRLE-EELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK-DSSLWKLIFPWLIEQ  172 (765)
Q Consensus        95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~  172 (765)
                      ......+...|++++|+.+|..+.... |.+...+..+...+...+....|...+..++...+. +......+...|.+.
T Consensus        55 n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~  134 (857)
T PLN03077         55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF  134 (857)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhC
Confidence            334456889999999999999988753 445567777778888899999999999999887654 345667788889999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCC------------------------
Q 004249          173 GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL--CPEN------------------------  226 (765)
Q Consensus       173 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~------------------------  226 (765)
                      |+.+.|...|+++..   .+..+|..+...|.+.|++++|+..|.++...  .|+.                        
T Consensus       135 g~~~~A~~~f~~m~~---~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~  211 (857)
T PLN03077        135 GELVHAWYVFGKMPE---RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA  211 (857)
T ss_pred             CChHHHHHHHhcCCC---CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHH
Confidence            999999999998753   46778999999999999999999999998753  3432                        


Q ss_pred             ----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Q 004249          227 ----------IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSG  296 (765)
Q Consensus       227 ----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  296 (765)
                                ..++..+...|.+.|++++|..+|+++..  |+ ..  .|+.+...|.+.|++++|+.+|.++... +  
T Consensus       212 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d-~~--s~n~li~~~~~~g~~~eAl~lf~~M~~~-g--  283 (857)
T PLN03077        212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--RD-CI--SWNAMISGYFENGECLEGLELFFTMREL-S--  283 (857)
T ss_pred             HHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--CC-cc--hhHHHHHHHHhCCCHHHHHHHHHHHHHc-C--
Confidence                      22344555666667777777777766542  21 11  4666777777777777777777776654 1  


Q ss_pred             CCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHH
Q 004249          297 KELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHL  376 (765)
Q Consensus       297 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  376 (765)
                      ...+...+..+...+...|+.+.|.+++..+.......+..++..+...|.+.|++++|..+|+++..     .+...|.
T Consensus       284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~~s~n  358 (857)
T PLN03077        284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-----KDAVSWT  358 (857)
T ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeeHH
Confidence            12233444555556666777777777777666555555666777777777777777777777766431     2445666


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHH
Q 004249          377 KIAECSLALKEREKSIIYFYKALQIL--EDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRI  454 (765)
Q Consensus       377 ~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (765)
                      .+...|.+.|++++|+..|+++.+..  |+ ...+..+...+...|+.++|.+++..+.+.....           +..+
T Consensus       359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-----------~~~~  426 (857)
T PLN03077        359 AMISGYEKNGLPDKALETYALMEQDNVSPD-EITIASVLSACACLGDLDVGVKLHELAERKGLIS-----------YVVV  426 (857)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhCCCCC-ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc-----------chHH
Confidence            77777777777777777777665543  33 3344455556667777777777776665543322           2356


Q ss_pred             HHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHH
Q 004249          455 KIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKE  534 (765)
Q Consensus       455 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  534 (765)
                      +..+...|.+.|++++|.+.|.++..            .+...+..+...|.+.|+.++|+.+|++++...    +++..
T Consensus       427 ~n~Li~~y~k~g~~~~A~~vf~~m~~------------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~----~pd~~  490 (857)
T PLN03077        427 ANALIEMYSKCKCIDKALEVFHNIPE------------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL----KPNSV  490 (857)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhCCC------------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCC----CCCHh
Confidence            67777888888888888877765532            234466677777788888888888888876532    34444


Q ss_pred             HHHHHHhhcccccCChhhHHHHHHHHHHhC-CCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhh
Q 004249          535 ELYFLGAQIPCNTTDPKLWFDGVRFMVKLH-PHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQF  613 (765)
Q Consensus       535 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~  613 (765)
                      .+..++. .+.+.|+.+.+.+.+..+++.. +.+....+.+...+.+.|.. +.+.+.+...    +.+...+..+...|
T Consensus       491 t~~~lL~-a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~-~~A~~~f~~~----~~d~~s~n~lI~~~  564 (857)
T PLN03077        491 TLIAALS-ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM-NYAWNQFNSH----EKDVVSWNILLTGY  564 (857)
T ss_pred             HHHHHHH-HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH-HHHHHHHHhc----CCChhhHHHHHHHH
Confidence            4445555 6777788888888888777643 23445666777777777665 4555555443    45566677777788


Q ss_pred             hhhhhHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhc---ccCCCchHHHhHH
Q 004249          614 TMISHHQDAAREYLEAYK--LLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLR---LAENSQEALYNIA  688 (765)
Q Consensus       614 ~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~lg  688 (765)
                      ...|+.++|+..|.+..+  ..|+.......+ .++.+.          ..+.+|..++..-.+   +.| +.+.|..+.
T Consensus       565 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll-~a~~~~----------g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv  632 (857)
T PLN03077        565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLL-CACSRS----------GMVTQGLEYFHSMEEKYSITP-NLKHYACVV  632 (857)
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH-HHHhhc----------ChHHHHHHHHHHHHHHhCCCC-chHHHHHHH
Confidence            889999999999998776  457654433222 223222          246778888876653   334 347788899


Q ss_pred             HHHHHhchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 004249          689 RAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHC  763 (765)
Q Consensus       689 ~~~~~~g~~~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~k~l  763 (765)
                      .+|...|+.++|.+.+++. ...|+                      ..++..|-..+...||.+.|....++.+
T Consensus       633 ~~l~r~G~~~eA~~~~~~m-~~~pd----------------------~~~~~aLl~ac~~~~~~e~~e~~a~~l~  684 (857)
T PLN03077        633 DLLGRAGKLTEAYNFINKM-PITPD----------------------PAVWGALLNACRIHRHVELGELAAQHIF  684 (857)
T ss_pred             HHHHhCCCHHHHHHHHHHC-CCCCC----------------------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            9999999999999988764 23331                      3444455556788899998888777664

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.96  E-value=6.7e-26  Score=214.79  Aligned_cols=501  Identities=14%  Similarity=0.071  Sum_probs=385.4

Q ss_pred             HHHHHHHHhh--cCCCcchhhhhccccccccCCCCCC-----C-------CCCCcHHHHHHHHHHHHHHHcCCHHHHHHH
Q 004249           48 RRRFEAIIFG--FGSRKRSREASKKYPSLKKRGRPEG-----S-------KKKVCPEIRRMLGDASLHYALGRYEEAISV  113 (765)
Q Consensus        48 ~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~-----~-------~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~  113 (765)
                      ..+++++.+.  +...|+++.++...   +..||+..     +       ...++-....++..|..|-...-+.+|+..
T Consensus       147 ~ev~ell~es~ian~~~~~k~aldka---kdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealnt  223 (840)
T KOG2003|consen  147 KEVMELLEESCIANECGDFKEALDKA---KDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNT  223 (840)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHH---HhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhh
Confidence            3456665543  34557777777666   43443321     1       112333455678889999999999999999


Q ss_pred             HHHHHH--hhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004249          114 LHEVIR--LEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD-----SSLWKLIFPWLIEQGDTTWAMSCLSEAV  186 (765)
Q Consensus       114 ~~~~l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al  186 (765)
                      |+-+++  ..|+....-..+|.++++..+|.+|+++|+.++..-|.-     ...+.++|..+.+.|+|+.|+..|+.++
T Consensus       224 yeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m  303 (840)
T KOG2003|consen  224 YEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCM  303 (840)
T ss_pred             hhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHH
Confidence            998875  457777788899999999999999999999999887753     3566778999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CC---------CH-HHHHHHHHH---H--HHcCCHHHHHHH
Q 004249          187 KADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLC--PE---------NI-EALKMGAKL---Y--QKSGQIESSVDI  249 (765)
Q Consensus       187 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~---------~~-~~~~~la~~---~--~~~g~~~~A~~~  249 (765)
                      +..|+. .+-+++..+++..|+-++-.+.|.+++.+-  |+         ++ ..+..-+.-   +  +...+-..|.+.
T Consensus       304 ~~~pn~-~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~  382 (840)
T KOG2003|consen  304 EEAPNF-IAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKA  382 (840)
T ss_pred             HhCccH-HhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHH
Confidence            999854 455778889999999999999999998752  11         11 111111111   1  111222233333


Q ss_pred             HHHHHhc-----CCCCCC---H---------------HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHH
Q 004249          250 LEDYLKG-----HPTEAD---F---------------GVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIK  306 (765)
Q Consensus       250 ~~~~~~~-----~p~~~~---~---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  306 (765)
                      .-.+.++     .|+...   |               ..-.+.+..+.+.|+++.|+++++-..+.   +......+..+
T Consensus       383 i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~k---dnk~~saaa~n  459 (840)
T KOG2003|consen  383 IITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKK---DNKTASAAANN  459 (840)
T ss_pred             HHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhc---cchhhHHHhhh
Confidence            3333221     222111   0               01125566788999999999998766554   22333444556


Q ss_pred             HHHHHHhc--CChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Q 004249          307 AGICHIQL--GNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLA  384 (765)
Q Consensus       307 l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~  384 (765)
                      +..+++.+  .++..|..+...++..+ .-++.++.+.|.+.+..|++++|.+.|.+++..  +..-.++++++|..+..
T Consensus       460 l~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n--dasc~ealfniglt~e~  536 (840)
T KOG2003|consen  460 LCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN--DASCTEALFNIGLTAEA  536 (840)
T ss_pred             hHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC--chHHHHHHHHhcccHHH
Confidence            66655554  37888888888887766 667888999999999999999999999999987  67778999999999999


Q ss_pred             hccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHh
Q 004249          385 LKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKA  464 (765)
Q Consensus       385 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  464 (765)
                      +|+.++|+.+|-+.-.+--++.++++.++.+|..+.+..+|++++.++...-|..            +.++..++.+|-+
T Consensus       537 ~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~d------------p~ilskl~dlydq  604 (840)
T KOG2003|consen  537 LGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND------------PAILSKLADLYDQ  604 (840)
T ss_pred             hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC------------HHHHHHHHHHhhc
Confidence            9999999999999988888999999999999999999999999999999988877            7889999999999


Q ss_pred             cchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcc
Q 004249          465 KGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIP  544 (765)
Q Consensus       465 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  544 (765)
                      .|+-.+|.+++....+         -.|-+.+...-||..|....-+++|+.+|+++--+.    |+ ..-+..+.+.|+
T Consensus       605 egdksqafq~~ydsyr---------yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq----p~-~~kwqlmiasc~  670 (840)
T KOG2003|consen  605 EGDKSQAFQCHYDSYR---------YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ----PN-QSKWQLMIASCF  670 (840)
T ss_pred             ccchhhhhhhhhhccc---------ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC----cc-HHHHHHHHHHHH
Confidence            9999999998877665         678899999999999999999999999999998776    43 444555556699


Q ss_pred             cccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhh
Q 004249          545 CNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKI  584 (765)
Q Consensus       545 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  584 (765)
                      .+.|+|.+|++.|+..-..+|.+...+..+..+....|-.
T Consensus       671 rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~  710 (840)
T KOG2003|consen  671 RRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK  710 (840)
T ss_pred             HhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence            9999999999999999999999999998888887666554

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.95  E-value=5.6e-23  Score=203.78  Aligned_cols=548  Identities=15%  Similarity=0.080  Sum_probs=344.0

Q ss_pred             cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004249          138 LGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR  217 (765)
Q Consensus       138 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  217 (765)
                      .++..+|...++...+.+|.++.+|..-|.+-...|.+..|.....+..+..|.+.++|..-+.    +...+.|..+.-
T Consensus       264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiR----Lhp~d~aK~vvA  339 (913)
T KOG0495|consen  264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIR----LHPPDVAKTVVA  339 (913)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHh----cCChHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999888876543    334444555555


Q ss_pred             HHHHhCCCCHHHHHHHHHH---------------------------HHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 004249          218 QMVQLCPENIEALKMGAKL---------------------------YQKSGQIESSVDILEDYLKGHPTEADFGVIDLLA  270 (765)
Q Consensus       218 ~al~~~p~~~~~~~~la~~---------------------------~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~  270 (765)
                      .+++..|.++..|+.-+.+                           -....+.+.|+.++.++++..|.+.+  .|.   
T Consensus       340 ~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~d--Lwl---  414 (913)
T KOG0495|consen  340 NAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMD--LWL---  414 (913)
T ss_pred             HHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHH--HHH---
Confidence            5555555555444433322                           22344555677777777777776654  333   


Q ss_pred             HHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC----CCChH----------
Q 004249          271 SMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN----VSDHA----------  336 (765)
Q Consensus       271 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~----------  336 (765)
                       .+.++.-|+.|..+++++.+.    -|....+|...+..-...|+.+...+++.+.+...    ..-+-          
T Consensus       415 -AlarLetYenAkkvLNkaRe~----iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~  489 (913)
T KOG0495|consen  415 -ALARLETYENAKKVLNKAREI----IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC  489 (913)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhh----CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence             344556788888888888887    56677778777777777777776666666543211    01111          


Q ss_pred             ---------------------------HHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHH
Q 004249          337 ---------------------------ESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKERE  389 (765)
Q Consensus       337 ---------------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  389 (765)
                                                 ..|..-+..+.+.+-++-|..+|..++..  .|..-.+|...+..-...|..+
T Consensus       490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~E  567 (913)
T KOG0495|consen  490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRE  567 (913)
T ss_pred             hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHH
Confidence                                       23333444455555555555566555555  5555556655555555556666


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhH
Q 004249          390 KSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIE  469 (765)
Q Consensus       390 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  469 (765)
                      .-...+++++...|.....|...+..+...|+...|..++.++.+.+|.+            ..+++....+......++
T Consensus       568 sl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pns------------eeiwlaavKle~en~e~e  635 (913)
T KOG0495|consen  568 SLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNS------------EEIWLAAVKLEFENDELE  635 (913)
T ss_pred             HHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCc------------HHHHHHHHHHhhccccHH
Confidence            66666666666666655566666666666666666666666666655555            345555555555566666


Q ss_pred             HHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCC
Q 004249          470 GFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTD  549 (765)
Q Consensus       470 ~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~  549 (765)
                      .|...|.++..          ......+++..+.+...+++.++|+.+++.+++..    |.-+..+. ..+.++.++++
T Consensus       636 raR~llakar~----------~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f----p~f~Kl~l-mlGQi~e~~~~  700 (913)
T KOG0495|consen  636 RARDLLAKARS----------ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF----PDFHKLWL-MLGQIEEQMEN  700 (913)
T ss_pred             HHHHHHHHHhc----------cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC----CchHHHHH-HHhHHHHHHHH
Confidence            66655555542          11233455555555555666666666666666655    33333333 33336666666


Q ss_pred             hhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHH
Q 004249          550 PKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEA  629 (765)
Q Consensus       550 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a  629 (765)
                      .+.|...|..-++..|+.+..|..++.+-...+.. .++...+.+..-++|.+...++-.-..-+..|+.+.|-....+|
T Consensus       701 ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~-~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakA  779 (913)
T KOG0495|consen  701 IEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL-VRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKA  779 (913)
T ss_pred             HHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch-hhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            66666666666666666666666666655554422 45555666666666666655555555555566666666666666


Q ss_pred             HhhCCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHHhchHHHHHHHHHHHHh
Q 004249          630 YKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLA  709 (765)
Q Consensus       630 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~  709 (765)
                      ++..|++....-  .-+++.-.-++    +        .....+.+.+..++.++..+|+.+..-.+++.|...|++++.
T Consensus       780 LQecp~sg~LWa--EaI~le~~~~r----k--------Tks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk  845 (913)
T KOG0495|consen  780 LQECPSSGLLWA--EAIWLEPRPQR----K--------TKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK  845 (913)
T ss_pred             HHhCCccchhHH--HHHHhccCccc----c--------hHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            666666532211  00111000000    0        011223456778999999999999999999999999999999


Q ss_pred             hhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 004249          710 MYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHCT  764 (765)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~k~l~  764 (765)
                      .+|++                     -.+.-.+-..+...|+-+.-.+++.++.+
T Consensus       846 ~d~d~---------------------GD~wa~fykfel~hG~eed~kev~~~c~~  879 (913)
T KOG0495|consen  846 KDPDN---------------------GDAWAWFYKFELRHGTEEDQKEVLKKCET  879 (913)
T ss_pred             cCCcc---------------------chHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            99976                     24444555667788888888888887643

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.2e-26  Score=230.29  Aligned_cols=309  Identities=14%  Similarity=0.085  Sum_probs=271.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL  169 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  169 (765)
                      ++...++++......-+..+|+..|.+.-...++...++..+|..|+.+++|++|..+|+.+-+..|-.....-....++
T Consensus       318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L  397 (638)
T KOG1126|consen  318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL  397 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence            44555777888888889999999999977777888899999999999999999999999999999998777666677777


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004249          170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDI  249 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  249 (765)
                      ..+.+--+--...+..+..+|+.|+.|..+|.+|..+++++.|+++|+++++++|....++..+|.-+.....++.|..+
T Consensus       398 WHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~  477 (638)
T KOG1126|consen  398 WHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKS  477 (638)
T ss_pred             HHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHH
Confidence            77776555555667778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcc
Q 004249          250 LEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHW  329 (765)
Q Consensus       250 ~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  329 (765)
                      |+.++..+|.+..  +|+.+|.+|.++++++.|.-.|++++.+    .|.+..+...+|.++.+.|+.++|+.++++++.
T Consensus       478 fr~Al~~~~rhYn--AwYGlG~vy~Kqek~e~Ae~~fqkA~~I----NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~  551 (638)
T KOG1126|consen  478 FRKALGVDPRHYN--AWYGLGTVYLKQEKLEFAEFHFQKAVEI----NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH  551 (638)
T ss_pred             HHhhhcCCchhhH--HHHhhhhheeccchhhHHHHHHHhhhcC----CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence            9999999999877  8999999999999999999999999999    778888888888888888888888888888877


Q ss_pred             cCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHH
Q 004249          330 ENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNID  407 (765)
Q Consensus       330 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  407 (765)
                      .+ |.++-..+..|.++...+++++|+..++++..+  .|+...+++.+|.+|.+.|+.+.|+..|.-|..++|.-..
T Consensus       552 ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  552 LD-PKNPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             cC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            66 777888888888888888888888888888888  7888888888888888888888888888888888887554

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.95  E-value=1.7e-22  Score=227.47  Aligned_cols=403  Identities=13%  Similarity=0.047  Sum_probs=337.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 004249           99 SLHYALGRYEEAISVLHEVIRLEEE--LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTT  176 (765)
Q Consensus        99 ~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~  176 (765)
                      ..+.+.|++++|+.+|+++...+.-  +...+..+...+...|..++|..+|+....  | +...|..+...+...|+++
T Consensus       378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e  454 (1060)
T PLN03218        378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDID  454 (1060)
T ss_pred             HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHH
Confidence            4567899999999999999876532  333444566678889999999999987764  4 5678888999999999999


Q ss_pred             HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004249          177 WAMSCLSEAVKADP-NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCP-ENIEALKMGAKLYQKSGQIESSVDILEDYL  254 (765)
Q Consensus       177 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  254 (765)
                      +|..+|.++.+... .+...+..+...|.+.|+.++|..+|+++.+... .+...|..+...|.+.|++++|+.+|+.+.
T Consensus       455 ~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~  534 (1060)
T PLN03218        455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR  534 (1060)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            99999999988753 4678899999999999999999999999987653 367889999999999999999999999987


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCC
Q 004249          255 KGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSD  334 (765)
Q Consensus       255 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  334 (765)
                      ...-. ++...|..+...+.+.|++++|.+++.++... ...-..+...+..+..+|.+.|++++|.++|+.+.....+.
T Consensus       535 ~~Gv~-PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p  612 (1060)
T PLN03218        535 SKNVK-PDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG  612 (1060)
T ss_pred             HcCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            65322 23347889999999999999999999999764 11122345677888889999999999999999998877677


Q ss_pred             hHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc-CCCHHHHHHHH
Q 004249          335 HAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL-EDNIDARLTLA  413 (765)
Q Consensus       335 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  413 (765)
                      +...|..+...|.+.|++++|+.+|.++...+..| +...|..+...+.+.|++++|.+.++.+.+.. +.+..++..+.
T Consensus       613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI  691 (1060)
T PLN03218        613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM  691 (1060)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            88999999999999999999999999999876455 46788999999999999999999999999875 45678899999


Q ss_pred             HHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhh
Q 004249          414 SLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEE  493 (765)
Q Consensus       414 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~  493 (765)
                      ..|.+.|++++|.++|+++......+           +...|..+...|.+.|++++|++.+..+....       ..| 
T Consensus       692 ~ay~k~G~~eeA~~lf~eM~~~g~~P-----------dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G-------i~P-  752 (1060)
T PLN03218        692 GACSNAKNWKKALELYEDIKSIKLRP-----------TVSTMNALITALCEGNQLPKALEVLSEMKRLG-------LCP-  752 (1060)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCC-
Confidence            99999999999999999875432211           23678899999999999999999999987543       333 


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhcc
Q 004249          494 HRLLIIDLCKTLASLHRYEDAIKIINLILKLGY  526 (765)
Q Consensus       494 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  526 (765)
                      +...+..+...+.+.|++++|.+++..+++...
T Consensus       753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi  785 (1060)
T PLN03218        753 NTITYSILLVASERKDDADVGLDLLSQAKEDGI  785 (1060)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence            445666777899999999999999999998763

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.95  E-value=1.6e-23  Score=229.23  Aligned_cols=478  Identities=10%  Similarity=-0.039  Sum_probs=366.0

Q ss_pred             HHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 004249          118 IRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKF  197 (765)
Q Consensus       118 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  197 (765)
                      .-..|..+...+..+.+..+.|+++.|+..|+++++.+|.++.+...++.++...|+.++|+.++++++...|.......
T Consensus        27 ~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll  106 (822)
T PRK14574         27 FVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA  106 (822)
T ss_pred             cccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence            34578899999999999999999999999999999999999655448888999999999999999999944455555666


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc
Q 004249          198 HLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMN  277 (765)
Q Consensus       198 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~  277 (765)
                      .+|.++...|++++|++.|+++++.+|+++.++..++.++...++.++|+..++++...+|....   +..++.++...+
T Consensus       107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~---~l~layL~~~~~  183 (822)
T PRK14574        107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN---YMTLSYLNRATD  183 (822)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH---HHHHHHHHHhcc
Confidence            66889999999999999999999999999999999999999999999999999999999998543   345566666677


Q ss_pred             cHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHH
Q 004249          278 AYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALK  357 (765)
Q Consensus       278 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  357 (765)
                      +..+|+..+++++..    .|....++..+..++...|-...|.+...+--.-..+. ...+.          +.+.|.+
T Consensus       184 ~~~~AL~~~ekll~~----~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~-~~~~l----------~~~~~a~  248 (822)
T PRK14574        184 RNYDALQASSEAVRL----APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAE-HYRQL----------ERDAAAE  248 (822)
T ss_pred             hHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHH-HHHHH----------HHHHHHH
Confidence            787799999999999    78888999999999999999999998877642211111 11111          1222333


Q ss_pred             HHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHcCCHHHHHHhcC
Q 004249          358 YYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNI-------DARLTLASLLLEDAKDEEAISLLT  430 (765)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~  430 (765)
                      ..+-+.    .+....     .   .+---.+.|+..++.++...|..+       .+..-...++...|++.+++..|+
T Consensus       249 ~vr~a~----~~~~~~-----~---~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~  316 (822)
T PRK14574        249 QVRMAV----LPTRSE-----T---ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYE  316 (822)
T ss_pred             HHhhcc----cccccc-----h---hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            222221    111100     0   011124667777777777443322       233445667778899999999998


Q ss_pred             CCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhc
Q 004249          431 PPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHR  510 (765)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~  510 (765)
                      .........       |    ..+....|..|...+++++|+.+|..++....+   ....|.+......|..++...++
T Consensus       317 ~l~~~~~~~-------P----~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~---~~~~~~~~~~~~~L~yA~ld~e~  382 (822)
T PRK14574        317 AMEAEGYKM-------P----DYARRWAASAYIDRRLPEKAAPILSSLYYSDGK---TFRNSDDLLDADDLYYSLNESEQ  382 (822)
T ss_pred             HhhhcCCCC-------C----HHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc---ccCCCcchHHHHHHHHHHHhccc
Confidence            877543211       1    346678899999999999999999988763311   11123344445678889999999


Q ss_pred             HHHHHHHHHHHHHhccC---------CCCch-HHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhh
Q 004249          511 YEDAIKIINLILKLGYG---------KFPVE-KEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSR  580 (765)
Q Consensus       511 ~~~A~~~~~~al~~~~~---------~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~  580 (765)
                      +++|..++++..+..|.         ..|++ -.....+.+.++...|+..+|.+.+++++...|.|+..+..++.+...
T Consensus       383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~  462 (822)
T PRK14574        383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLA  462 (822)
T ss_pred             HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            99999999999985541         11222 223444455578889999999999999999999999999999999988


Q ss_pred             hhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHH
Q 004249          581 FEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLIN  640 (765)
Q Consensus       581 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  640 (765)
                      .+.. ..+...+.......|++..+....|.+....++|.+|.....++++..|+++.+.
T Consensus       463 Rg~p-~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~  521 (822)
T PRK14574        463 RDLP-RKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ  521 (822)
T ss_pred             cCCH-HHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence            7776 5777777777888999999999999999999999999999999999999998553

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.95  E-value=8.2e-24  Score=237.09  Aligned_cols=446  Identities=13%  Similarity=0.038  Sum_probs=244.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHcCC
Q 004249           98 ASLHYALGRYEEAISVLHEVIRLEE--ELPNSYHILGLVHDALGNTAKAMGCYWLAACYK-QKDSSLWKLIFPWLIEQGD  174 (765)
Q Consensus        98 a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g~  174 (765)
                      ...+...|++++|+.+|..+....|  .+...+..+..++...++++.|...+..+.... ..+...+..+..+|.+.|+
T Consensus        94 i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~  173 (697)
T PLN03081         94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGM  173 (697)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCC
Confidence            3446667777777777777665432  234556666666667777777777776665432 1245566666677777777


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249          175 TTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE-NIEALKMGAKLYQKSGQIESSVDILEDY  253 (765)
Q Consensus       175 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~  253 (765)
                      +++|...|+++..  | +..+|..+...|.+.|++++|+..|+++.+..+. +...+..+...+...|....+.+++..+
T Consensus       174 ~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~  250 (697)
T PLN03081        174 LIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV  250 (697)
T ss_pred             HHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            7777777766543  2 4455666666667777777777777766654322 2344555555666666666666666555


Q ss_pred             HhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCC
Q 004249          254 LKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVS  333 (765)
Q Consensus       254 ~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  333 (765)
                      ++..-.. +..++..+...|.+.|++++|..+|+.+.       +.+...|..+...|.+.|+.++|..+|+++......
T Consensus       251 ~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~  322 (697)
T PLN03081        251 LKTGVVG-DTFVSCALIDMYSKCGDIEDARCVFDGMP-------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS  322 (697)
T ss_pred             HHhCCCc-cceeHHHHHHHHHHCCCHHHHHHHHHhCC-------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            5433111 11145566666666666666666665542       123445555556666666666666666665444334


Q ss_pred             ChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 004249          334 DHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLA  413 (765)
Q Consensus       334 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  413 (765)
                      .+...+..+...+.+.|++++|.+++..+++.+ .+.+..++..+...|.+.|++++|...|+++.+   .+..+|..+.
T Consensus       323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI  398 (697)
T PLN03081        323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALI  398 (697)
T ss_pred             CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC-CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHH
Confidence            445555556666666666666666666655553 233445555566666666666666666655432   2344555566


Q ss_pred             HHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhh
Q 004249          414 SLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEE  493 (765)
Q Consensus       414 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~  493 (765)
                      ..|.+.|+.++|+++|+++......+           +...+..+...+...|..++|.+.|..+....       ....
T Consensus       399 ~~y~~~G~~~~A~~lf~~M~~~g~~P-----------d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~-------g~~p  460 (697)
T PLN03081        399 AGYGNHGRGTKAVEMFERMIAEGVAP-----------NHVTFLAVLSACRYSGLSEQGWEIFQSMSENH-------RIKP  460 (697)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC-----------CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-------CCCC
Confidence            66666666666666665544322111           12444555555555666666665555554311       1111


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHH
Q 004249          494 HRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNR  573 (765)
Q Consensus       494 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  573 (765)
                      +...+..+...|.+.|++++|.+++++.-      ..++...+..++. .+...|+.+.|...+++++...|++...+..
T Consensus       461 ~~~~y~~li~~l~r~G~~~eA~~~~~~~~------~~p~~~~~~~Ll~-a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~  533 (697)
T PLN03081        461 RAMHYACMIELLGREGLLDEAYAMIRRAP------FKPTVNMWAALLT-ACRIHKNLELGRLAAEKLYGMGPEKLNNYVV  533 (697)
T ss_pred             CccchHhHHHHHHhcCCHHHHHHHHHHCC------CCCCHHHHHHHHH-HHHHcCCcHHHHHHHHHHhCCCCCCCcchHH
Confidence            22344445555556666666665554321      0122223333333 4555556666666555555555555544444


Q ss_pred             HHHHHhhhhh
Q 004249          574 YYKLVSRFEK  583 (765)
Q Consensus       574 ~~~~~~~~~~  583 (765)
                      +..++...|+
T Consensus       534 L~~~y~~~G~  543 (697)
T PLN03081        534 LLNLYNSSGR  543 (697)
T ss_pred             HHHHHHhCCC
Confidence            4444444433

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.95  E-value=3e-23  Score=232.51  Aligned_cols=466  Identities=9%  Similarity=-0.010  Sum_probs=384.8

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQ--KDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKAD-PNDFKLKFHLASL  202 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~  202 (765)
                      ..|..+...+...|++++|+..|..+....+  -+...+..+..++...++++.|...+..+.... ..+..++..+...
T Consensus        88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~  167 (697)
T PLN03081         88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM  167 (697)
T ss_pred             eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            3567777888899999999999999876543  356778889999999999999999999888753 2367888999999


Q ss_pred             HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHH
Q 004249          203 YVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRV  282 (765)
Q Consensus       203 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A  282 (765)
                      |.+.|+++.|...|+++.+  | +...|..+...|.+.|++++|+.+|+++.+..+. ++...+..+...+...|....+
T Consensus       168 y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~-p~~~t~~~ll~a~~~~~~~~~~  243 (697)
T PLN03081        168 HVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSD-AEPRTFVVMLRASAGLGSARAG  243 (697)
T ss_pred             HhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CChhhHHHHHHHHhcCCcHHHH
Confidence            9999999999999998854  3 5667899999999999999999999999876543 2233567888889999999999


Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHH
Q 004249          283 LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHML  362 (765)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  362 (765)
                      .+++..+.+. +  ...+..++..+...|.+.|++++|...|+.+.    +.+...|..+...|.+.|++++|+.+|+++
T Consensus       244 ~~l~~~~~~~-g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M  316 (697)
T PLN03081        244 QQLHCCVLKT-G--VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM  316 (697)
T ss_pred             HHHHHHHHHh-C--CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            9998887766 1  23355677788899999999999999999874    446789999999999999999999999999


Q ss_pred             HhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccC
Q 004249          363 EANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL-EDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVN  441 (765)
Q Consensus       363 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  441 (765)
                      ...+..| +...+..+..++.+.|++++|.+.+..+++.. +.+..++..+...|.+.|+.++|.++|+++.+.+     
T Consensus       317 ~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d-----  390 (697)
T PLN03081        317 RDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN-----  390 (697)
T ss_pred             HHcCCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCC-----
Confidence            8775344 56788999999999999999999999999886 5677888999999999999999999999887632     


Q ss_pred             cccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 004249          442 SDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLI  521 (765)
Q Consensus       442 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  521 (765)
                                ...|..+...|.+.|+.++|++.|.++....       ..| +...+..+...+...|..++|.++|+.+
T Consensus       391 ----------~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g-------~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m  452 (697)
T PLN03081        391 ----------LISWNALIAGYGNHGRGTKAVEMFERMIAEG-------VAP-NHVTFLAVLSACRYSGLSEQGWEIFQSM  452 (697)
T ss_pred             ----------eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence                      2568899999999999999999999988654       334 3556778888999999999999999999


Q ss_pred             HHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC
Q 004249          522 LKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRD  601 (765)
Q Consensus       522 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~  601 (765)
                      .+....  .++ ...|....+.+.+.|+.++|.+.++++- ..| +..+|+.+...+...++. +.+...+.+.++..|+
T Consensus       453 ~~~~g~--~p~-~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~-~~a~~~~~~l~~~~p~  526 (697)
T PLN03081        453 SENHRI--KPR-AMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNL-ELGRLAAEKLYGMGPE  526 (697)
T ss_pred             HHhcCC--CCC-ccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCc-HHHHHHHHHHhCCCCC
Confidence            864311  122 2345555668999999999999987752 233 456788888887776665 5667777778888999


Q ss_pred             CCCchhhhhhhhhhhhhHHHHHHHHHHHHhh
Q 004249          602 FVPPIIISGHQFTMISHHQDAAREYLEAYKL  632 (765)
Q Consensus       602 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~  632 (765)
                      +...+..+.++|...|++++|...+....+.
T Consensus       527 ~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        527 KLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             CCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            8889999999999999999999999987654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.9e-23  Score=198.11  Aligned_cols=372  Identities=16%  Similarity=0.118  Sum_probs=313.8

Q ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHH
Q 004249          123 ELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADP--NDFKLKFHLA  200 (765)
Q Consensus       123 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la  200 (765)
                      .++-.++..|.++...|....|+..|..++...|.+..+|..|+.+...       +......+..-|  .+.-.-+.++
T Consensus       162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~  234 (559)
T KOG1155|consen  162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLK  234 (559)
T ss_pred             chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHH
Confidence            4566788899999999999999999999999999999999988876543       223333333334  3344456788


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccH
Q 004249          201 SLYVELGNFQRAADVYRQMVQL-CPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAY  279 (765)
Q Consensus       201 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~  279 (765)
                      .++....+.++++.-++..... .|.+.......|.+.....++++|+..|+...+.+|-..+  -...+.++++-.++-
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~--dmdlySN~LYv~~~~  312 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLD--DMDLYSNVLYVKNDK  312 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcch--hHHHHhHHHHHHhhh
Confidence            8888888999999999999888 8999888889999999999999999999999999998766  455677777666654


Q ss_pred             HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHH
Q 004249          280 DRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYY  359 (765)
Q Consensus       280 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  359 (765)
                      .+-.-.-..+..+    +...++....+|..|...++.++|+.+|+++++.+ |....+|..+|.-|+..++...|+..|
T Consensus       313 skLs~LA~~v~~i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY  387 (559)
T KOG1155|consen  313 SKLSYLAQNVSNI----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY  387 (559)
T ss_pred             HHHHHHHHHHHHh----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence            4444444455555    56667777888999999999999999999999888 888999999999999999999999999


Q ss_pred             HHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccc
Q 004249          360 HMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKY  439 (765)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  439 (765)
                      ++++++  +|.+..+|+.+|+.|.-++.+.=|+-+|++++...|.++..|..||.+|.+.++.++|+++|..++.....+
T Consensus       388 RrAvdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte  465 (559)
T KOG1155|consen  388 RRAVDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE  465 (559)
T ss_pred             HHHHhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence            999999  999999999999999999999999999999999999999999999999999999999999999999876655


Q ss_pred             cCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 004249          440 VNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIIN  519 (765)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  519 (765)
                                  +.++..+|.+|...++.++|...|.+.+... . ..-..+|+-..+..-|+.-+.+.+++++|..+..
T Consensus       466 ------------~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~-~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~  531 (559)
T KOG1155|consen  466 ------------GSALVRLAKLYEELKDLNEAAQYYEKYVEVS-E-LEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT  531 (559)
T ss_pred             ------------hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-H-hhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence                        6789999999999999999999999988622 1 0111455667777779999999999999999887


Q ss_pred             HHHHh
Q 004249          520 LILKL  524 (765)
Q Consensus       520 ~al~~  524 (765)
                      .++.-
T Consensus       532 ~~~~~  536 (559)
T KOG1155|consen  532 LVLKG  536 (559)
T ss_pred             HHhcC
Confidence            77654

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.94  E-value=1.1e-21  Score=220.88  Aligned_cols=366  Identities=13%  Similarity=0.076  Sum_probs=310.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHcCCHHH
Q 004249           99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQ-KDSSLWKLIFPWLIEQGDTTW  177 (765)
Q Consensus        99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~g~~~~  177 (765)
                      ..+...|..++|..+++.+..  | +...|..+-.++...|+++.|...|..+.+... .+...|..+...|.+.|+.++
T Consensus       414 ~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~  490 (1060)
T PLN03218        414 KACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA  490 (1060)
T ss_pred             HHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHH
Confidence            456788999999999987754  3 467888888999999999999999999988653 367888999999999999999


Q ss_pred             HHHHHHHHHhcCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004249          178 AMSCLSEAVKADP-NDFKLKFHLASLYVELGNFQRAADVYRQMVQLC-PENIEALKMGAKLYQKSGQIESSVDILEDYLK  255 (765)
Q Consensus       178 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  255 (765)
                      |..+|+++..... .+..+|..+...|.+.|++++|+..|..+.... ..+...+..+...|.+.|++++|.+++.++..
T Consensus       491 A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~  570 (1060)
T PLN03218        491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA  570 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999987653 378899999999999999999999999997643 23467899999999999999999999999976


Q ss_pred             c-CCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCC
Q 004249          256 G-HPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSD  334 (765)
Q Consensus       256 ~-~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  334 (765)
                      . .+-.++...+..+...|.+.|++++|.++|+.+.+.   +.+.....+..+...|.+.|++++|..+|..+.......
T Consensus       571 ~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~---gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P  647 (1060)
T PLN03218        571 ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY---NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP  647 (1060)
T ss_pred             hcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Confidence            3 222333447889999999999999999999999876   224456778889999999999999999999998766566


Q ss_pred             hHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc-CCCHHHHHHHH
Q 004249          335 HAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL-EDNIDARLTLA  413 (765)
Q Consensus       335 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  413 (765)
                      +...+..+...+.+.|++++|..+++.+.+.+ .+.+...+..+..+|.+.|++++|...|+++.... ..+...|..+.
T Consensus       648 D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G-~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI  726 (1060)
T PLN03218        648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQG-IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI  726 (1060)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            68899999999999999999999999999875 34567899999999999999999999999987643 33567899999


Q ss_pred             HHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhh
Q 004249          414 SLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCES  482 (765)
Q Consensus       414 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  482 (765)
                      ..|.+.|++++|.++|+++......+           +...+..+...+.+.|++++|.+++..+++..
T Consensus       727 ~gy~k~G~~eeAlelf~eM~~~Gi~P-----------d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G  784 (1060)
T PLN03218        727 TALCEGNQLPKALEVLSEMKRLGLCP-----------NTITYSILLVASERKDDADVGLDLLSQAKEDG  784 (1060)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            99999999999999999876533221           23667778889999999999999999998754

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.94  E-value=1.4e-23  Score=220.48  Aligned_cols=275  Identities=14%  Similarity=0.091  Sum_probs=188.5

Q ss_pred             cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC----HHHHH
Q 004249           88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD----SSLWK  163 (765)
Q Consensus        88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~  163 (765)
                      .+.+...+..|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...+..    ..++.
T Consensus        32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~  111 (389)
T PRK11788         32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQ  111 (389)
T ss_pred             hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            34555566667778888888888888888888888888888888888888888888888888887753322    24567


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH
Q 004249          164 LIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI-----EALKMGAKLYQ  238 (765)
Q Consensus       164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~  238 (765)
                      .+|.++...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|.+.     ..+..+|.++.
T Consensus       112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  191 (389)
T PRK11788        112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL  191 (389)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence            7788888888888888888888887777778888888888888888888888888887776542     23456777777


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHhcCCh
Q 004249          239 KSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELL-LALKIKAGICHIQLGNT  317 (765)
Q Consensus       239 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~  317 (765)
                      ..|++++|+..|+++++..|+...  .+..+|.++...|++++|+..++++...    .+.. ..++..++.++...|++
T Consensus       192 ~~~~~~~A~~~~~~al~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~~l~~~~~~~g~~  265 (389)
T PRK11788        192 ARGDLDAARALLKKALAADPQCVR--ASILLGDLALAQGDYAAAIEALERVEEQ----DPEYLSEVLPKLMECYQALGDE  265 (389)
T ss_pred             hCCCHHHHHHHHHHHHhHCcCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHH----ChhhHHHHHHHHHHHHHHcCCH
Confidence            777777777777777777776554  5667777777777777777777777765    2221 23344455555555555


Q ss_pred             hHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCH
Q 004249          318 DKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDG  372 (765)
Q Consensus       318 ~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  372 (765)
                      ++|...+++++... |+. ..+..++.++...|++++|+..+++++..  .|++.
T Consensus       266 ~~A~~~l~~~~~~~-p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~  316 (389)
T PRK11788        266 AEGLEFLRRALEEY-PGA-DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLR  316 (389)
T ss_pred             HHHHHHHHHHHHhC-CCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHH
Confidence            55555555554433 222 22244555555555555555555555554  44444

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=6.4e-23  Score=201.03  Aligned_cols=451  Identities=14%  Similarity=0.082  Sum_probs=361.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249           99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWA  178 (765)
Q Consensus        99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A  178 (765)
                      .-+..+.+|.-|+-+-+++..+. .+|.-.+.+|.+++-.|++..|......- .+...+....+..+.++....++++|
T Consensus        24 r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~a  101 (611)
T KOG1173|consen   24 RDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQA  101 (611)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            35677889999999999998877 77888889999999999999988877654 45566778888899999999999999


Q ss_pred             HHHHHHH------HhcCCCC-------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004249          179 MSCLSEA------VKADPND-------------------FKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMG  233 (765)
Q Consensus       179 ~~~~~~a------l~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  233 (765)
                      ..++.+.      +..+|.+                   ....+..|.+|....+.++|...|.+++..++.+.++...+
T Consensus       102 l~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~l  181 (611)
T KOG1173|consen  102 LLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKL  181 (611)
T ss_pred             HHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHH
Confidence            9888732      1112222                   12456778899999999999999999999998886655444


Q ss_pred             HHHHHHc-----------------CCHHHHHH-HHHHH---------HhcCCC------CCCHHHHHHHHHHHHHhccHH
Q 004249          234 AKLYQKS-----------------GQIESSVD-ILEDY---------LKGHPT------EADFGVIDLLASMLVQMNAYD  280 (765)
Q Consensus       234 a~~~~~~-----------------g~~~~A~~-~~~~~---------~~~~p~------~~~~~~~~~l~~~~~~~~~~~  280 (765)
                      .....-.                 +...+-++ .|+-.         +...|+      .....++...+..++..+++.
T Consensus       182 vs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~  261 (611)
T KOG1173|consen  182 VSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFK  261 (611)
T ss_pred             HHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHH
Confidence            3322211                 11111111 11110         001121      011235667888999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHH
Q 004249          281 RVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYH  360 (765)
Q Consensus       281 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  360 (765)
                      +..+.++..++.    +|.....+....-++...|+..+-..+-.+++... |+.+-.|+.+|..|...|++.+|..+|.
T Consensus       262 ~c~kit~~lle~----dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~S  336 (611)
T KOG1173|consen  262 ECLKITEELLEK----DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFS  336 (611)
T ss_pred             HHHHHhHHHHhh----CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHH
Confidence            999999999999    55555554443338899999888877777888777 8889999999999999999999999999


Q ss_pred             HHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCcccccc
Q 004249          361 MLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYV  440 (765)
Q Consensus       361 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  440 (765)
                      ++..+  +|....+|...|..+...|..++|+..|..|-++.|......+.+|.-|.+.+++.-|.+.|.++..+.|.. 
T Consensus       337 Kat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D-  413 (611)
T KOG1173|consen  337 KATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD-  413 (611)
T ss_pred             HHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc-
Confidence            99999  999999999999999999999999999999999999999999999999999999999999999999999988 


Q ss_pred             CcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhccccccc-ChhhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 004249          441 NSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETF-NHEEHRLLIIDLCKTLASLHRYEDAIKIIN  519 (765)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  519 (765)
                                 +.+...+|.+.+..+.+.+|...|..++...   .++. ..+.|...+.+||.++.+.+++++|+..++
T Consensus       414 -----------plv~~Elgvvay~~~~y~~A~~~f~~~l~~i---k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q  479 (611)
T KOG1173|consen  414 -----------PLVLHELGVVAYTYEEYPEALKYFQKALEVI---KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ  479 (611)
T ss_pred             -----------chhhhhhhheeehHhhhHHHHHHHHHHHHHh---hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence                       6788899999999999999999999887322   1111 122477789999999999999999999999


Q ss_pred             HHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHH
Q 004249          520 LILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLV  578 (765)
Q Consensus       520 ~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~  578 (765)
                      +++.+.    |.+....-.+|- ++...|+++.|++.|.++|.+.|++..+-..+...+
T Consensus       480 ~aL~l~----~k~~~~~asig~-iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  480 KALLLS----PKDASTHASIGY-IYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI  533 (611)
T ss_pred             HHHHcC----CCchhHHHHHHH-HHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            999999    777777777777 999999999999999999999999976655554443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.94  E-value=1.4e-23  Score=220.41  Aligned_cols=304  Identities=13%  Similarity=0.071  Sum_probs=264.6

Q ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHH
Q 004249          124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND----FKLKFHL  199 (765)
Q Consensus       124 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l  199 (765)
                      .....+.+|..+...|++++|+..|.+++..+|++..++..+|.++...|++++|+..+++++...+..    ..++..+
T Consensus        34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L  113 (389)
T PRK11788         34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL  113 (389)
T ss_pred             hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            345677789999999999999999999999999999999999999999999999999999998854332    3568899


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHHh
Q 004249          200 ASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD---FGVIDLLASMLVQM  276 (765)
Q Consensus       200 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~~~l~~~~~~~  276 (765)
                      |.++...|++++|+..|.++++..|.+..++..++.++...|++++|+..++++++..|.+..   ...+..+|.++...
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  193 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR  193 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999999998877643   22455789999999


Q ss_pred             ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHH
Q 004249          277 NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTAL  356 (765)
Q Consensus       277 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  356 (765)
                      |++++|+..++++++.    .+....++..+|.++...|++++|+..+++++...+.....++..++.++...|++++|+
T Consensus       194 ~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~  269 (389)
T PRK11788        194 GDLDAARALLKKALAA----DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL  269 (389)
T ss_pred             CCHHHHHHHHHHHHhH----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999998    566778899999999999999999999999987664444567889999999999999999


Q ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--cCCHHHHHHhcCCCCC
Q 004249          357 KYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLE--DAKDEEAISLLTPPMS  434 (765)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~  434 (765)
                      ..+++++..  .|+... +..++.++...|++++|+..++++++..|++......+...+..  .|+.++++..+++.+.
T Consensus       270 ~~l~~~~~~--~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        270 EFLRRALEE--YPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             HHHHHHHHh--CCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence            999999998  787644 48899999999999999999999999999987655444444322  4588888888876654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.94  E-value=6e-23  Score=212.84  Aligned_cols=436  Identities=14%  Similarity=0.043  Sum_probs=258.7

Q ss_pred             HcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004249          103 ALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCL  182 (765)
Q Consensus       103 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  182 (765)
                      .+++...|...|-++++++|..+.+|..||.+|...-+...|.++|++|.+++|.+..++-..+..|.+..+++.|....
T Consensus       470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~  549 (1238)
T KOG1127|consen  470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC  549 (1238)
T ss_pred             hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence            34568899999999999999999999999999999889999999999999999998888777777777766666666654


Q ss_pred             HHHHhcCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249          183 SEAVKADPND--FKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTE  260 (765)
Q Consensus       183 ~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  260 (765)
                      -.+-+..|..  ...|..+|-.|...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+
T Consensus       550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s  629 (1238)
T KOG1127|consen  550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS  629 (1238)
T ss_pred             HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence            4444433321  23344455566666666666666666666666666666666666666666666666666666666554


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHH-----------------------------------------HHhc----C
Q 004249          261 ADFGVIDLLASMLVQMNAYDRVLKHIELVD-----------------------------------------LVYY----S  295 (765)
Q Consensus       261 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------------------------------------~~~~----~  295 (765)
                      .-  +.+..+.+....|.|.+|+..+...+                                         +.+.    .
T Consensus       630 ~y--~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h  707 (1238)
T KOG1127|consen  630 KY--GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH  707 (1238)
T ss_pred             HH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            33  33345555555555555555544433                                         2110    0


Q ss_pred             CCCccHHHHHHHHHH-------------------HH----hcCCh---h---HHHHHHHhhcccCCCChHHHHHHHHHHH
Q 004249          296 GKELLLALKIKAGIC-------------------HI----QLGNT---D---KAEILLTAIHWENVSDHAESINEIADLF  346 (765)
Q Consensus       296 ~~~~~~~~~~~l~~~-------------------~~----~~~~~---~---~A~~~~~~~~~~~~~~~~~~~~~la~~~  346 (765)
                      ........|..++.+                   +.    .++..   +   -+.+++-..++  ...++..|+++|..|
T Consensus       708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGiny  785 (1238)
T KOG1127|consen  708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINY  785 (1238)
T ss_pred             hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHH
Confidence            000011111111110                   00    01111   1   11122221111  123355677777555


Q ss_pred             Hc--------cccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004249          347 KN--------RELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLE  418 (765)
Q Consensus       347 ~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  418 (765)
                      ..        ..+...|+.++.+++++  ..++...|..||.+ ...|++.-|..+|-+.+...|.+...|.++|.++.+
T Consensus       786 lr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~  862 (1238)
T KOG1127|consen  786 LRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLE  862 (1238)
T ss_pred             HHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEe
Confidence            43        12334677777777777  67777777777777 555777777777777777777777777777777777


Q ss_pred             cCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHH---------------------
Q 004249          419 DAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLP---------------------  477 (765)
Q Consensus       419 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~---------------------  477 (765)
                      ..+++.|...|.++...+|.+            ...|...+.+....|+.-++...+..                     
T Consensus       863 n~d~E~A~~af~~~qSLdP~n------------l~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~t  930 (1238)
T KOG1127|consen  863 NQDFEHAEPAFSSVQSLDPLN------------LVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCAT  930 (1238)
T ss_pred             cccHHHhhHHHHhhhhcCchh------------hHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHH
Confidence            777777777777777777766            23333333333333333333333332                     


Q ss_pred             ------------------HHhhhccccc-ccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCc-hHHHHH
Q 004249          478 ------------------LVCESSHQEE-TFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPV-EKEELY  537 (765)
Q Consensus       478 ------------------~~~~~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~  537 (765)
                                        +......+.. +...|+...++...|..+..++.+.+|.+...+.+.+-...... ....+-
T Consensus       931 e~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak 1010 (1238)
T KOG1127|consen  931 EIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAK 1010 (1238)
T ss_pred             HHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence                              2111111111 11667778888888888888888888888887776654321111 111133


Q ss_pred             HHHhhcccccCChhhHHHHH
Q 004249          538 FLGAQIPCNTTDPKLWFDGV  557 (765)
Q Consensus       538 ~~~~~~~~~~g~~~~A~~~~  557 (765)
                      ...++++...|+++.|...+
T Consensus      1011 ~~~gRL~lslgefe~A~~a~ 1030 (1238)
T KOG1127|consen 1011 PDAGRLELSLGEFESAKKAS 1030 (1238)
T ss_pred             hhhhhhhhhhcchhhHhhhh
Confidence            33444777777777665443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.8e-24  Score=216.67  Aligned_cols=304  Identities=11%  Similarity=0.028  Sum_probs=279.2

Q ss_pred             HHHHHHHHHH--HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249          127 SYHILGLVHD--ALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV  204 (765)
Q Consensus       127 ~~~~l~~~~~--~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  204 (765)
                      .+..+|..|.  .+-+..+|+..|.+.-...++...+...+|..|+++++|++|..+|+.+-+..|-..+..-....++.
T Consensus       319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW  398 (638)
T KOG1126|consen  319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW  398 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence            4445555554  44567899999999767778888889999999999999999999999999999987777777777777


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 004249          205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLK  284 (765)
Q Consensus       205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~  284 (765)
                      .+.+.-+---..+..+..+|..|+.|..+|.+|.-+++.+.|+++|++++.++|...-  +|..+|.-+.....+|.|..
T Consensus       399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY--ayTLlGhE~~~~ee~d~a~~  476 (638)
T KOG1126|consen  399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY--AYTLLGHESIATEEFDKAMK  476 (638)
T ss_pred             HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch--hhhhcCChhhhhHHHHhHHH
Confidence            7776655556667788999999999999999999999999999999999999998876  78899999999999999999


Q ss_pred             HHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHh
Q 004249          285 HIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEA  364 (765)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  364 (765)
                      .|+.++..    ++....+|+.+|.+|.++++++.|.-.|++++..+ |.+..+...+|.++.+.|+.++|+.+|++++.
T Consensus       477 ~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~  551 (638)
T KOG1126|consen  477 SFRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH  551 (638)
T ss_pred             HHHhhhcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence            99999999    88999999999999999999999999999999988 88899999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccc
Q 004249          365 NAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKY  439 (765)
Q Consensus       365 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  439 (765)
                      +  +|.++-..+..|.++...+++++|+..++++.++-|++..+++.+|.+|.+.|+.+.|+..|.-|.+.+|..
T Consensus       552 l--d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  552 L--DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             c--CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence            9  999999999999999999999999999999999999999999999999999999999999999999999886

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.8e-22  Score=192.76  Aligned_cols=369  Identities=12%  Similarity=0.060  Sum_probs=309.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCC--CCHHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQ--KDSSLWKLIFP  167 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~la~  167 (765)
                      +...++..|.++...|..+.|+..|..++...|-+..+|..|+.+...       ++........-|  .+.-.-+.++.
T Consensus       163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~  235 (559)
T KOG1155|consen  163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKK  235 (559)
T ss_pred             hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHH
Confidence            344556778999999999999999999999999999999999877643       222333332233  23334456888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249          168 WLIEQGDTTWAMSCLSEAVKA-DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESS  246 (765)
Q Consensus       168 ~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  246 (765)
                      ++....+.++++.-++..+.. .|.+.-.-...|.+...+.++++|+..|+.+.+.+|-..+-.-....+++-.++-.+-
T Consensus       236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL  315 (559)
T KOG1155|consen  236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL  315 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence            888888999999999999988 7888888899999999999999999999999999998877666777777766665555


Q ss_pred             HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHh
Q 004249          247 VDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTA  326 (765)
Q Consensus       247 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  326 (765)
                      .-+.+.+..++.-.+.  ....+|+.|.-.++.++|+.+|++++++    +|....+|..+|.-|..+++...|+..|++
T Consensus       316 s~LA~~v~~idKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkL----Np~~~~aWTLmGHEyvEmKNt~AAi~sYRr  389 (559)
T KOG1155|consen  316 SYLAQNVSNIDKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKL----NPKYLSAWTLMGHEYVEMKNTHAAIESYRR  389 (559)
T ss_pred             HHHHHHHHHhccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhc----CcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence            5555666666655555  5668999999999999999999999999    889999999999999999999999999999


Q ss_pred             hcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH
Q 004249          327 IHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNI  406 (765)
Q Consensus       327 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  406 (765)
                      +++.+ |.+-.+|+.+|+.|.-.+.+.=|+-+|+++...  .|+++.+|..||.||.+.++.++|+.+|.+++.....+.
T Consensus       390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~  466 (559)
T KOG1155|consen  390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG  466 (559)
T ss_pred             HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence            99988 888999999999999999999999999999999  999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHH
Q 004249          407 DARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLV  479 (765)
Q Consensus       407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~  479 (765)
                      .++..||.+|.+.++..+|..+|++.++..... ..  ..+  .-..+...++..+.+.+++++|-......+
T Consensus       467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~e-g~--~~~--~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~  534 (559)
T KOG1155|consen  467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELE-GE--IDD--ETIKARLFLAEYFKKMKDFDEASYYATLVL  534 (559)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh-cc--cch--HHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence            999999999999999999999998877632100 00  000  013566679999999999999986665554

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.93  E-value=6.4e-23  Score=194.73  Aligned_cols=509  Identities=13%  Similarity=0.082  Sum_probs=373.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh------------CC------CchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLE------------EE------LPNSYHILGLVHDALGNTAKAMGCYWLA  151 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------------p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a  151 (765)
                      ++..++....+.-..|++.+|+.-...+=+..            |.      ...+++.++.-|.....+.+|+..|+-.
T Consensus       148 ev~ell~es~ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeii  227 (840)
T KOG2003|consen  148 EVMELLEESCIANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEII  227 (840)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhh
Confidence            35566676777778899999988776542211            21      1257888899998888999999999887


Q ss_pred             hcc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 004249          152 ACY--KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND-----FKLKFHLASLYVELGNFQRAADVYRQMVQLCP  224 (765)
Q Consensus       152 ~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  224 (765)
                      ++.  .|+......++|.++++...|.+|+++|+.++..-|.-     ..++.++|..+.+.|+|+.|+..|+.+.+..|
T Consensus       228 vknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~p  307 (840)
T KOG2003|consen  228 VKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAP  307 (840)
T ss_pred             hcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCc
Confidence            753  47777777889999999999999999999999876642     45678888999999999999999999999998


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C---------CCCCHHHHHH-H-HHHH--HHhccHHHHHHHHHHH
Q 004249          225 ENIEALKMGAKLYQKSGQIESSVDILEDYLKGH--P---------TEADFGVIDL-L-ASML--VQMNAYDRVLKHIELV  289 (765)
Q Consensus       225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p---------~~~~~~~~~~-l-~~~~--~~~~~~~~A~~~~~~~  289 (765)
                      +... -+++..+++..|+-++-.+.|.+++.+-  |         +++....+.. + ...+  ....+-..|.+.+-.+
T Consensus       308 n~~a-~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta  386 (840)
T KOG2003|consen  308 NFIA-ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITA  386 (840)
T ss_pred             cHHh-hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence            7654 4577788889999999999999988642  1         1222111110 0 0111  1112233344444444


Q ss_pred             HHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCC
Q 004249          290 DLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVH  369 (765)
Q Consensus       290 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  369 (765)
                      .++..+--....    ..|.        +=.++.++..  ...+--.+.-.+.+-.+++.|+++.|++++.-..+.. ..
T Consensus       387 ~kiiapvi~~~f----a~g~--------dwcle~lk~s--~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kd-nk  451 (840)
T KOG2003|consen  387 AKIIAPVIAPDF----AAGC--------DWCLESLKAS--QHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKD-NK  451 (840)
T ss_pred             HHHhccccccch----hccc--------HHHHHHHHHh--hhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhcc-ch
Confidence            444221111111    1110        0001111111  0112223344556677889999999999887555442 22


Q ss_pred             CCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchh
Q 004249          370 NDGCLHLKIAECSLALK--EREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHA  447 (765)
Q Consensus       370 ~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  447 (765)
                      ....+-.++..+++.+|  ++.+|..+-..++..+.-++.+....|.+-+..|++++|.+.|++++..+...        
T Consensus       452 ~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc--------  523 (840)
T KOG2003|consen  452 TASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC--------  523 (840)
T ss_pred             hhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH--------
Confidence            22334455665655543  58889999999999998899999999999999999999999999998877665        


Q ss_pred             hhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccC
Q 004249          448 WWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYG  527 (765)
Q Consensus       448 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  527 (765)
                          ..+++.+|..+..+|+.++|++.|.++-.         .--++.++++.++.+|..+.+..+|++++.++..+.  
T Consensus       524 ----~ealfniglt~e~~~~ldeald~f~klh~---------il~nn~evl~qianiye~led~aqaie~~~q~~sli--  588 (840)
T KOG2003|consen  524 ----TEALFNIGLTAEALGNLDEALDCFLKLHA---------ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI--  588 (840)
T ss_pred             ----HHHHHHhcccHHHhcCHHHHHHHHHHHHH---------HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC--
Confidence                57888999999999999999999887653         334688899999999999999999999999999888  


Q ss_pred             CCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchh
Q 004249          528 KFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPII  607 (765)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  607 (765)
                        |++|..+..++. +|-+.|+-.+|+.++-.....+|.|..+...++..+..+. .++.+..|+++..-..|+...-.+
T Consensus       589 --p~dp~ilskl~d-lydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtq-f~ekai~y~ekaaliqp~~~kwql  664 (840)
T KOG2003|consen  589 --PNDPAILSKLAD-LYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQ-FSEKAINYFEKAALIQPNQSKWQL  664 (840)
T ss_pred             --CCCHHHHHHHHH-HhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhH-HHHHHHHHHHHHHhcCccHHHHHH
Confidence              888888887777 9999999999999999999999999888877777665543 346889999998888898887778


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHH
Q 004249          608 ISGHQFTMISHHQDAAREYLEAYKLLPENPLINL  641 (765)
Q Consensus       608 ~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  641 (765)
                      ..+.++-..|+|++|...|....+..|.+...+-
T Consensus       665 miasc~rrsgnyqka~d~yk~~hrkfpedldclk  698 (840)
T KOG2003|consen  665 MIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLK  698 (840)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhCccchHHHH
Confidence            8899999999999999999999999999865443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=6.5e-23  Score=200.42  Aligned_cols=431  Identities=15%  Similarity=0.116  Sum_probs=305.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 004249           93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQ  172 (765)
Q Consensus        93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  172 (765)
                      ..-.+|+..+..|+|+.|+.+|.+++.++|.+...+.+...+|..+|+|++|++.-.+.++++|+.+..|..+|..+.-+
T Consensus         4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l   83 (539)
T KOG0548|consen    4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL   83 (539)
T ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC---------------------HHHHHHHHHHHHH---hCCCCHH
Q 004249          173 GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN---------------------FQRAADVYRQMVQ---LCPENIE  228 (765)
Q Consensus       173 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---------------------~~~A~~~~~~al~---~~p~~~~  228 (765)
                      |+|++|+..|.+.++.+|++......++.++.....                     +-..-..|...++   .+|.+..
T Consensus        84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~  163 (539)
T KOG0548|consen   84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK  163 (539)
T ss_pred             ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence            999999999999999999999999998888732200                     1111122223322   3332221


Q ss_pred             HHHHH---HHHHHHc-CCHHHHHHHHHHHH-----hcCCC---------CC----------CHHHHHHHHHHHHHhccHH
Q 004249          229 ALKMG---AKLYQKS-GQIESSVDILEDYL-----KGHPT---------EA----------DFGVIDLLASMLVQMNAYD  280 (765)
Q Consensus       229 ~~~~l---a~~~~~~-g~~~~A~~~~~~~~-----~~~p~---------~~----------~~~~~~~l~~~~~~~~~~~  280 (765)
                      .+..-   ..+.... |.-..  .......     ...|.         -.          ...-...+|...+...++.
T Consensus       164 ~~l~d~r~m~a~~~l~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~  241 (539)
T KOG0548|consen  164 LYLNDPRLMKADGQLKGVDEL--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE  241 (539)
T ss_pred             cccccHHHHHHHHHHhcCccc--cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence            11110   0000000 00000  0000000     00110         00          0112347888888888888


Q ss_pred             HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCC------hHHHHHHHHHHHHccccHHH
Q 004249          281 RVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSD------HAESINEIADLFKNRELYST  354 (765)
Q Consensus       281 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~  354 (765)
                      .|++.+..++.+    . .....+.+.+-+++..|.+.+.+.....+++.....      -......+|..+...++++.
T Consensus       242 ~a~q~y~~a~el----~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~  316 (539)
T KOG0548|consen  242 TAIQHYAKALEL----A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG  316 (539)
T ss_pred             HHHHHHHHHHhH----h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence            888888888888    4 556667777888888888888877777766543211      12234446667778888889


Q ss_pred             HHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCC
Q 004249          355 ALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMS  434 (765)
Q Consensus       355 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  434 (765)
                      |+.+|++++...  ..        ..+.......+++....+...-.+|.-...-..-|..++..|++..|+..|.+++.
T Consensus       317 ai~~~~kaLte~--Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk  386 (539)
T KOG0548|consen  317 AIKYYQKALTEH--RT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK  386 (539)
T ss_pred             HHHHHHHHhhhh--cC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence            999998877652  21        45566667777777777777777777766666678888888888888888888888


Q ss_pred             ccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHH
Q 004249          435 LENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDA  514 (765)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  514 (765)
                      .+|++            +..+..+|-+|.+.|.+..|+......++         .+|++...+++-|.++..+.+|++|
T Consensus       387 r~P~D------------a~lYsNRAac~~kL~~~~~aL~Da~~~ie---------L~p~~~kgy~RKg~al~~mk~ydkA  445 (539)
T KOG0548|consen  387 RDPED------------ARLYSNRAACYLKLGEYPEALKDAKKCIE---------LDPNFIKAYLRKGAALRAMKEYDKA  445 (539)
T ss_pred             cCCch------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHh---------cCchHHHHHHHHHHHHHHHHHHHHH
Confidence            88777            67788888888888888888888887776         7788888888888888888888888


Q ss_pred             HHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCc
Q 004249          515 IKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHR  567 (765)
Q Consensus       515 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~  567 (765)
                      .+.|++++++.    |.+...+..+.. |...+.......+.++++ ..+|+-
T Consensus       446 leay~eale~d----p~~~e~~~~~~r-c~~a~~~~~~~ee~~~r~-~~dpev  492 (539)
T KOG0548|consen  446 LEAYQEALELD----PSNAEAIDGYRR-CVEAQRGDETPEETKRRA-MADPEV  492 (539)
T ss_pred             HHHHHHHHhcC----chhHHHHHHHHH-HHHHhhcCCCHHHHHHhh-ccCHHH
Confidence            88888888887    566555555544 444434444455555553 345543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.93  E-value=1.3e-21  Score=203.06  Aligned_cols=584  Identities=13%  Similarity=0.039  Sum_probs=391.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHH--------------------------HHcCCHHHHHHH
Q 004249           94 MLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVH--------------------------DALGNTAKAMGC  147 (765)
Q Consensus        94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~--------------------------~~~g~~~~A~~~  147 (765)
                      ..+.+.+......|..|...+.......-+ .+.+..+..|+                          ..+++...|...
T Consensus       402 ~~akgl~~ie~~~y~Daa~tl~lv~~~s~n-d~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~a  480 (1238)
T KOG1127|consen  402 QRAKGLAPIEANVYTDAAITLDLVSSLSFN-DDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHA  480 (1238)
T ss_pred             hhhcchhHHHHhhchHHHHHHHHHHHhhcC-chhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            345566667777888888887777665422 11111111111                          234567889999


Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-
Q 004249          148 YWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN-  226 (765)
Q Consensus       148 ~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-  226 (765)
                      |-++++++|....+|..||.+|....+...|..+|.+|.++++.+..+.-..+..|....+++.|....-.+-+..|.. 
T Consensus       481 li~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~  560 (1238)
T KOG1127|consen  481 LIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA  560 (1238)
T ss_pred             HHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999977776666644 


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHH
Q 004249          227 -IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKI  305 (765)
Q Consensus       227 -~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  305 (765)
                       ...|..+|-.|...++..+|+..|+.+++.+|.+..  .|..+|.+|...|++..|++.|.++..+    .|......+
T Consensus       561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n--~W~gLGeAY~~sGry~~AlKvF~kAs~L----rP~s~y~~f  634 (1238)
T KOG1127|consen  561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYN--LWLGLGEAYPESGRYSHALKVFTKASLL----RPLSKYGRF  634 (1238)
T ss_pred             HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHH--HHHHHHHHHHhcCceehHHHhhhhhHhc----CcHhHHHHH
Confidence             345667999999999999999999999999999988  7889999999999999999999999999    888999999


Q ss_pred             HHHHHHHhcCChhHHHHHHHhhcccCC------CChHHHHHHHHHHHHccccHHHHHHHHHHHHhcc-------------
Q 004249          306 KAGICHIQLGNTDKAEILLTAIHWENV------SDHAESINEIADLFKNRELYSTALKYYHMLEANA-------------  366 (765)
Q Consensus       306 ~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------------  366 (765)
                      ..+......|++.+|+..+..++....      ....+.+...+..+...|-..+|..++++.+..-             
T Consensus       635 k~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~  714 (1238)
T KOG1127|consen  635 KEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRL  714 (1238)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHH
Confidence            999999999999999999988764331      1122333444433344444444444444433220             


Q ss_pred             --------------CCC-----------------------------------------CCHHHHHHHHHHHHH-------
Q 004249          367 --------------GVH-----------------------------------------NDGCLHLKIAECSLA-------  384 (765)
Q Consensus       367 --------------~~~-----------------------------------------~~~~~~~~la~~~~~-------  384 (765)
                                    ..|                                         ..+..|+++|.-|.+       
T Consensus       715 ~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~e  794 (1238)
T KOG1127|consen  715 QWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGE  794 (1238)
T ss_pred             HHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCC
Confidence                          000                                         113456666666655       


Q ss_pred             -hccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHH
Q 004249          385 -LKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYK  463 (765)
Q Consensus       385 -~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  463 (765)
                       +.+...|+.++.+++++..++...|..||.+ ...|++.-|...|-+....+|..            ...|..+|.+..
T Consensus       795 t~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~------------~~~W~NlgvL~l  861 (1238)
T KOG1127|consen  795 TMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTC------------HCQWLNLGVLVL  861 (1238)
T ss_pred             cchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccc------------hhheeccceeEE
Confidence             1223467788888888888888888888777 55577888888887777777766            566777777777


Q ss_pred             hcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhc
Q 004249          464 AKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQI  543 (765)
Q Consensus       464 ~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  543 (765)
                      ...+++-|-..+..+..         .+|.+...+...+.+....|+.-++..+|...-.++...-..-....+......
T Consensus       862 ~n~d~E~A~~af~~~qS---------LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~  932 (1238)
T KOG1127|consen  862 ENQDFEHAEPAFSSVQS---------LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEI  932 (1238)
T ss_pred             ecccHHHhhHHHHhhhh---------cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHH
Confidence            78888877777766653         677888888888888888888888888887754444221111111222222224


Q ss_pred             ccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHH
Q 004249          544 PCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAA  623 (765)
Q Consensus       544 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~  623 (765)
                      ....|+++.-+...+++.                         .+.-.+.+....+|+...++...|......+.|..|.
T Consensus       933 h~~Ng~~e~~I~t~~ki~-------------------------sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~  987 (1238)
T KOG1127|consen  933 HLQNGNIEESINTARKIS-------------------------SASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAAL  987 (1238)
T ss_pred             HHhccchHHHHHHhhhhh-------------------------hhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHH
Confidence            445555554444433322                         2233344556678888888888888888888888888


Q ss_pred             HHHHHHHhhC------CCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCC-CchHHHhHHHHHHHhch
Q 004249          624 REYLEAYKLL------PENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAEN-SQEALYNIARAYHHVGL  696 (765)
Q Consensus       624 ~~~~~a~~~~------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~  696 (765)
                      ..+.+.+.+-      ...+.+--..|..++..+-              +.-..+...+.+. .-|---......+.+|+
T Consensus       988 ela~RliglLe~k~d~sqynvak~~~gRL~lslge--------------fe~A~~a~~~~~~evdEdi~gt~l~lFfknd 1053 (1238)
T KOG1127|consen  988 ELATRLIGLLELKLDESQYNVAKPDAGRLELSLGE--------------FESAKKASWKEWMEVDEDIRGTDLTLFFKND 1053 (1238)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcc--------------hhhHhhhhcccchhHHHHHhhhhHHHHHHhH
Confidence            8877755321      1122233333444332220              0000111111110 00111111222277899


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 004249          697 VSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHC  763 (765)
Q Consensus       697 ~~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~k~l  763 (765)
                      +.++...|+++|.+..++.+.                  ....-.++..-.++|..+.|+..+-+++
T Consensus      1054 f~~sl~~fe~aLsis~se~d~------------------vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1054 FFSSLEFFEQALSISNSESDK------------------VVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred             HHHHHHHHHHHhhhcccccch------------------hhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence            999999999999987643211                  1223334444456666677777766553

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.93  E-value=1.4e-19  Score=180.66  Aligned_cols=578  Identities=14%  Similarity=0.139  Sum_probs=393.7

Q ss_pred             CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249           87 VCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIF  166 (765)
Q Consensus        87 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la  166 (765)
                      ++|.-..+|.++.-.+..++|...+...+.+++..|.+++.+...|..+..+|+.++|..+.+.++..++.+...|..+|
T Consensus         3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~g   82 (700)
T KOG1156|consen    3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLG   82 (700)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHH
Confidence            56666788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249          167 PWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESS  246 (765)
Q Consensus       167 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  246 (765)
                      .++....+|++|+.+|+.|+..+|+|...+..++.+..++++++.....-.+.++..|..-..|...+..+.-.|++..|
T Consensus        83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A  162 (700)
T KOG1156|consen   83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA  162 (700)
T ss_pred             HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCH------HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHH
Q 004249          247 VDILEDYLKGHPTEADF------GVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKA  320 (765)
Q Consensus       247 ~~~~~~~~~~~p~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  320 (765)
                      ...++...+.....++.      ........+....|.+++|++.+..-...    .-+........+.++.+++++++|
T Consensus       163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA  238 (700)
T KOG1156|consen  163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEA  238 (700)
T ss_pred             HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhH
Confidence            99988877655222221      12234455566667777777776654433    233344455667777888888888


Q ss_pred             HHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHH-HHHHHHHh----------------------------------c
Q 004249          321 EILLTAIHWENVSDHAESINEIADLFKNRELYSTAL-KYYHMLEA----------------------------------N  365 (765)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~----------------------------------~  365 (765)
                      ...+..++..+ |++...+..+-.++....+--+++ ..|...-+                                  .
T Consensus       239 ~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K  317 (700)
T KOG1156|consen  239 VKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK  317 (700)
T ss_pred             HHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence            88888877766 666555444443332111111111 11111100                                  0


Q ss_pred             c---------------------------------------------CCCCCH--HHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249          366 A---------------------------------------------GVHNDG--CLHLKIAECSLALKEREKSIIYFYKA  398 (765)
Q Consensus       366 ~---------------------------------------------~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a  398 (765)
                      +                                             ..|-.+  ..++.++.-+...|+++.|..+...+
T Consensus       318 g~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A  397 (700)
T KOG1156|consen  318 GVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA  397 (700)
T ss_pred             CCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            0                                             001122  24466788899999999999999999


Q ss_pred             HHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHH
Q 004249          399 LQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPL  478 (765)
Q Consensus       399 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  478 (765)
                      +...|.-++.+...|+++...|+.++|...+..+.+.+..+            ..+....|....+.++.++|..++...
T Consensus       398 IdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD------------R~INsKcAKYmLrAn~i~eA~~~~skF  465 (700)
T KOG1156|consen  398 IDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD------------RAINSKCAKYMLRANEIEEAEEVLSKF  465 (700)
T ss_pred             hccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh------------HHHHHHHHHHHHHccccHHHHHHHHHh
Confidence            99999999999999999999999999999999999987766            233347888899999999999988777


Q ss_pred             HhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHH
Q 004249          479 VCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVR  558 (765)
Q Consensus       479 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  558 (765)
                      .++..+.-.-+.+-...-....-|.+|.++|++..|++-|..+-+..... .++...+..    .+.+.|-+..=++.++
T Consensus       466 Tr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~-~~dqfDfht----yc~rk~tlrsYv~ll~  540 (700)
T KOG1156|consen  466 TREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTW-SEDQFDFHT----YCMRKGTLRSYVELLE  540 (700)
T ss_pred             hhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHH-hhhhhhHHH----HHHhcCcHHHHHHHHH
Confidence            65442211111112222234456788999999999998887776655321 222222221    2223333333233222


Q ss_pred             HH--HHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC-C-CCchhhhhhh-----------------hhhhh
Q 004249          559 FM--VKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRD-F-VPPIIISGHQ-----------------FTMIS  617 (765)
Q Consensus       559 ~~--l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~-~~~~~~~g~~-----------------~~~~~  617 (765)
                      .-  +...|....+..              .+.+...++.+. |+ . .......++.                 .....
T Consensus       541 ~~d~L~~~p~y~~Aa~--------------~Ai~iYl~l~d~-p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~  605 (700)
T KOG1156|consen  541 WEDNLRSSPYYLRAAK--------------GAIEIYLRLHDS-PNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAK  605 (700)
T ss_pred             HHHhhccChHHHHHHH--------------HHHHHHHHHhcC-cccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            11  112221111111              122222222211 10 0 0000000000                 00111


Q ss_pred             hHHHHHHHHHHHHhhC---CCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHHh
Q 004249          618 HHQDAAREYLEAYKLL---PENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHV  694 (765)
Q Consensus       618 ~~~~A~~~~~~a~~~~---p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~  694 (765)
                      .-.++.....+..+-.   |+++.    +|.-++..         .....+|..|+.......+++.+.+.--..+|...
T Consensus       606 ~~~~~~~~~~~s~~~~~~~~d~~~----~gekL~~t---------~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk  672 (700)
T KOG1156|consen  606 KKKDKKKKEAKSQSGKPVDIDEDP----FGEKLLKT---------EDPLEEARKFLPNLQHKGKEKGETYILSFELYYRK  672 (700)
T ss_pred             HHHHHHHhhhccccCCCCCCCCcc----hhhhHhhc---------CChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence            1122222222222222   33331    22222211         12345688888888888888989999999999999


Q ss_pred             chHHHHHHHHHHHHhhhhcc
Q 004249          695 GLVSLAASYYEKVLAMYQKD  714 (765)
Q Consensus       695 g~~~~A~~~y~k~l~~~~~~  714 (765)
                      |.+-.|..+.+++-.+.+.+
T Consensus       673 ~k~~l~~~~~~~~~~~~~~~  692 (700)
T KOG1156|consen  673 GKFLLALACLNNAEGIHGTH  692 (700)
T ss_pred             HHHHHHHHHHHhhhhhcCCC
Confidence            99999999999888887643

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.1e-21  Score=192.48  Aligned_cols=474  Identities=12%  Similarity=0.057  Sum_probs=348.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH
Q 004249          133 LVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRA  212 (765)
Q Consensus       133 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  212 (765)
                      .-+..+.+|..|+-+-+++..+. .+|.-.+.+|+++.-.|++..|...+..- .+...+..+.+..+.++....++++|
T Consensus        24 r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~a  101 (611)
T KOG1173|consen   24 RDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQA  101 (611)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            34456678888999999988877 77777788999999999999888777654 55667788889999999999999999


Q ss_pred             HHHHHHH------HHhCCCC-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHH
Q 004249          213 ADVYRQM------VQLCPEN-------------------IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVID  267 (765)
Q Consensus       213 ~~~~~~a------l~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~  267 (765)
                      ..++.+.      +...|.+                   ....+..|.+|....+.++|...|.+++..++...+  +..
T Consensus       102 l~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~E--a~~  179 (611)
T KOG1173|consen  102 LLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFE--AFE  179 (611)
T ss_pred             HHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHH--HHH
Confidence            9888743      1111111                   123445566666666677777777777666665544  222


Q ss_pred             HHHHHHHHhccHHHHHHHHHH-----HHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHH-hhcccCCCChHHHHHH
Q 004249          268 LLASMLVQMNAYDRVLKHIEL-----VDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLT-AIHWENVSDHAESINE  341 (765)
Q Consensus       268 ~l~~~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~~~~~~~~~~~  341 (765)
                      .+....+-.-  ++-...+..     ....    +.......+.+-.  .+. .-+++...-. ..+. ....++++...
T Consensus       180 ~lvs~~mlt~--~Ee~~ll~~l~~a~~~~e----d~e~l~~lyel~~--~k~-~n~~~~~r~~~~sl~-~l~~~~dll~~  249 (611)
T KOG1173|consen  180 KLVSAHMLTA--QEEFELLESLDLAMLTKE----DVERLEILYELKL--CKN-RNEESLTRNEDESLI-GLAENLDLLAE  249 (611)
T ss_pred             HHHHHHhcch--hHHHHHHhcccHHhhhhh----HHHHHHHHHHhhh--hhh-ccccccccCchhhhh-hhhhcHHHHHH
Confidence            2222111110  000111110     0000    0000000111000  000 0000000000 0001 11456788888


Q ss_pred             HHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 004249          342 IADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAK  421 (765)
Q Consensus       342 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  421 (765)
                      .++.++..+++.+-.++++.+++.  +|-++..+...-.++...|+..+=...-.+.++..|+.+-.|+.+|..|...|+
T Consensus       250 ~ad~~y~~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k  327 (611)
T KOG1173|consen  250 KADRLYYGCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGK  327 (611)
T ss_pred             HHHHHHHcChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC
Confidence            999999999999999999999999  777766554444488999998888888888999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHH
Q 004249          422 DEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDL  501 (765)
Q Consensus       422 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l  501 (765)
                      +.+|.++|.++...+|.-            +.+|...|..+...|..++|+..|..+.+         ..|....-.+.+
T Consensus       328 ~seARry~SKat~lD~~f------------gpaWl~fghsfa~e~EhdQAmaaY~tAar---------l~~G~hlP~LYl  386 (611)
T KOG1173|consen  328 YSEARRYFSKATTLDPTF------------GPAWLAFGHSFAGEGEHDQAMAAYFTAAR---------LMPGCHLPSLYL  386 (611)
T ss_pred             cHHHHHHHHHHhhcCccc------------cHHHHHHhHHhhhcchHHHHHHHHHHHHH---------hccCCcchHHHH
Confidence            999999999999999887            78899999999999999999999998876         455565666778


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCC----Cc---hhhhHHH
Q 004249          502 CKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHP----HR---LTTWNRY  574 (765)
Q Consensus       502 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p----~~---~~~~~~~  574 (765)
                      |.-|.+.++++-|.++|.+|+.+.    |.+|..+..++. +.+..+.+.+|..+|+.++..-+    ..   ...++++
T Consensus       387 gmey~~t~n~kLAe~Ff~~A~ai~----P~Dplv~~Elgv-vay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NL  461 (611)
T KOG1173|consen  387 GMEYMRTNNLKLAEKFFKQALAIA----PSDPLVLHELGV-VAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNL  461 (611)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcC----CCcchhhhhhhh-eeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhH
Confidence            888999999999999999999999    888988888888 99999999999999999994322    22   2446788


Q ss_pred             HHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 004249          575 YKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALIN  649 (765)
Q Consensus       575 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  649 (765)
                      +.++.+.+.. ..+..++.+.+...|.+...+...|.++...|+++.|+++|.+++-+.|+|..+.-.|+.+.-.
T Consensus       462 GH~~Rkl~~~-~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  462 GHAYRKLNKY-EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHHHHhhH-HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            8888776665 6889999999999999999999999999999999999999999999999998888888866554

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.92  E-value=6.5e-22  Score=181.47  Aligned_cols=316  Identities=15%  Similarity=0.095  Sum_probs=271.6

Q ss_pred             cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249           88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP  167 (765)
Q Consensus        88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  167 (765)
                      +.++...+..|..++..|++..|+..|..++..+|++-.+++..|.+|..+|+-.-|+..+.+++++.|+...+....|.
T Consensus        35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~  114 (504)
T KOG0624|consen   35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV  114 (504)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence            56888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCH---HH------------HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004249          168 WLIEQGDTTWAMSCLSEAVKADPNDF---KL------------KFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKM  232 (765)
Q Consensus       168 ~~~~~g~~~~A~~~~~~al~~~p~~~---~~------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  232 (765)
                      +++++|.+++|..-|..++..+|.+.   ++            +......+...|+...|+.....++++.|-++..+..
T Consensus       115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~  194 (504)
T KOG0624|consen  115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA  194 (504)
T ss_pred             hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence            99999999999999999999998543   22            2333445566799999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHH---HHH---
Q 004249          233 GAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLAL---KIK---  306 (765)
Q Consensus       233 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~---  306 (765)
                      .+.+|...|++..|+.-++.+-++..++..  .++.++.+++..|+.+.++..++.+++.    +|.....   +-.   
T Consensus       195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe--~~ykis~L~Y~vgd~~~sL~~iRECLKl----dpdHK~Cf~~YKklkK  268 (504)
T KOG0624|consen  195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTE--GHYKISQLLYTVGDAENSLKEIRECLKL----DPDHKLCFPFYKKLKK  268 (504)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhccccchH--HHHHHHHHHHhhhhHHHHHHHHHHHHcc----CcchhhHHHHHHHHHH
Confidence            999999999999999999999999988887  7889999999999999999999999998    3332221   111   


Q ss_pred             ------HHHHHHhcCChhHHHHHHHhhcccCCCChH----HHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHH
Q 004249          307 ------AGICHIQLGNTDKAEILLTAIHWENVSDHA----ESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHL  376 (765)
Q Consensus       307 ------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  376 (765)
                            -+......+++.++++..+++++.. |..+    .....+..++...|++.+|+..+.+++..  +|++..++.
T Consensus       269 v~K~les~e~~ie~~~~t~cle~ge~vlk~e-p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~  345 (504)
T KOG0624|consen  269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNE-PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLC  345 (504)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHH
Confidence                  1223456778888888888887665 4322    23444567778888999999999999988  899999999


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHH
Q 004249          377 KIAECSLALKEREKSIIYFYKALQILEDNIDARLTL  412 (765)
Q Consensus       377 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  412 (765)
                      ..|.+|.....|+.|+..|+++.+.++++..+.-.+
T Consensus       346 dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl  381 (504)
T KOG0624|consen  346 DRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL  381 (504)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            999999999999999999999999999888776554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.91  E-value=6.5e-20  Score=186.63  Aligned_cols=512  Identities=15%  Similarity=0.101  Sum_probs=369.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHH-----------HHHHHHHhCCHHHHHHHHHHHHHhCC-CC
Q 004249          167 PWLIEQGDTTWAMSCLSEAVKA--------DPNDFKLKFH-----------LASLYVELGNFQRAADVYRQMVQLCP-EN  226 (765)
Q Consensus       167 ~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~-----------la~~~~~~g~~~~A~~~~~~al~~~p-~~  226 (765)
                      ..+.+.|++.+|.+-+...+..        .|........           +..++...+....++..+.+++...- .+
T Consensus       182 k~L~~~~~iqea~e~cr~~L~~ve~~~t~~~~~~~s~~~~l~~vl~~~~~~~~~Lw~~~~~~~~~i~s~~~~l~~~w~~~  261 (799)
T KOG4162|consen  182 KSLKRLGRIQEAAEECRSVLDIVETKATQGSKDTESGALKLQEVLSRAVELLPILWKKLSGPKEAIKSYRRALLRSWSLD  261 (799)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHhHHHhcCCCCchHHHHhhhHHhhcccccc
Confidence            3455667888888888877764        2221222111           22334455777888888888865431 11


Q ss_pred             H----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHHHhccH
Q 004249          227 I----------------------EALKMGAKLYQKSGQIESSVDILEDYLKG-----HPTEADFGVIDLLASMLVQMNAY  279 (765)
Q Consensus       227 ~----------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~~l~~~~~~~~~~  279 (765)
                      +                      ........++.-..+.++++-..-..+..     ...+  ..+|-.+.......|++
T Consensus       262 ~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd--~ai~d~Lt~al~~~g~f  339 (799)
T KOG4162|consen  262 PLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQND--AAIFDHLTFALSRCGQF  339 (799)
T ss_pred             hhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcch--HHHHHHHHHHHHHHHHH
Confidence            1                      11112223333344444554443332221     1112  23677888889999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC-CCChHHHHHHHHHH-HHccccHHHHHH
Q 004249          280 DRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN-VSDHAESINEIADL-FKNRELYSTALK  357 (765)
Q Consensus       280 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~la~~-~~~~g~~~~A~~  357 (765)
                      ..+.+.|++++..    .-...+.|+.++.++...|.-..|+.+++...... .|+++..+...+.+ ....|..++++.
T Consensus       340 ~~lae~fE~~~~~----~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegld  415 (799)
T KOG4162|consen  340 EVLAEQFEQALPF----SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLD  415 (799)
T ss_pred             HHHHHHHHHHhHh----hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHH
Confidence            9999999999887    56678889999999999999999999999976544 24455555555554 467899999999


Q ss_pred             HHHHHHhcc---CCCCCHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHH
Q 004249          358 YYHMLEANA---GVHNDGCLHLKIAECSLALK-----------EREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDE  423 (765)
Q Consensus       358 ~~~~~~~~~---~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  423 (765)
                      +-.+++...   ...-.+..+..+|.+|..+-           ...++++.++++++.+|.|+.+.+.++.-|...++.+
T Consensus       416 YA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~  495 (799)
T KOG4162|consen  416 YAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLT  495 (799)
T ss_pred             HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHH
Confidence            999999841   02234577888888885442           2578999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHH
Q 004249          424 EAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCK  503 (765)
Q Consensus       424 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~  503 (765)
                      .|..+.++++..++..           ++.+|..++.++..++++.+|+.+...++.+         .|+|......-..
T Consensus       496 sAl~~~~eaL~l~~~~-----------~~~~whLLALvlSa~kr~~~Al~vvd~al~E---------~~~N~~l~~~~~~  555 (799)
T KOG4162|consen  496 SALDYAREALALNRGD-----------SAKAWHLLALVLSAQKRLKEALDVVDAALEE---------FGDNHVLMDGKIH  555 (799)
T ss_pred             HHHHHHHHHHHhcCCc-----------cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH---------hhhhhhhchhhhh
Confidence            9999999999985554           3688999999999999999999999999874         3566555555555


Q ss_pred             HHHhhhcHHHHHHHHHHHHHhccCCCCc-----hHHHHHHHHhhcccccCChhhHHHHHHHHHHh---------------
Q 004249          504 TLASLHRYEDAIKIINLILKLGYGKFPV-----EKEELYFLGAQIPCNTTDPKLWFDGVRFMVKL---------------  563 (765)
Q Consensus       504 ~~~~~~~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---------------  563 (765)
                      +-...++.++|+..+.+.+.+-....+-     .-.......+ .....++..+|...++++...               
T Consensus       556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~-l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp  634 (799)
T KOG4162|consen  556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAG-LHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP  634 (799)
T ss_pred             hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcc-cccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence            5566899999999988888866321110     1122223333 555566777787777776631               


Q ss_pred             ----CCCchhh-------hHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhh
Q 004249          564 ----HPHRLTT-------WNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKL  632 (765)
Q Consensus       564 ----~p~~~~~-------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~  632 (765)
                          .|.....       |...+......+.. +.+..-+....+..|-++..++..|..+...|++.+|...|.-++.+
T Consensus       635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~-~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l  713 (799)
T KOG4162|consen  635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGND-DEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL  713 (799)
T ss_pred             cccccCCCCchHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence                1222222       22333333333333 23333455666778999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHHhchHHHHHHHHHHHHhhhh
Q 004249          633 LPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQ  712 (765)
Q Consensus       633 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~  712 (765)
                      +|+++.+.-.+|.+++..+.++        ..+.-.++....++.|.+++++|++|.++.++|+.+.|...|.-++++.+
T Consensus       714 dP~hv~s~~Ala~~lle~G~~~--------la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  714 DPDHVPSMTALAELLLELGSPR--------LAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE  785 (799)
T ss_pred             CCCCcHHHHHHHHHHHHhCCcc--------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence            9999999999999999888443        23334588999999999999999999999999999999999999999988


Q ss_pred             cc
Q 004249          713 KD  714 (765)
Q Consensus       713 ~~  714 (765)
                      .+
T Consensus       786 S~  787 (799)
T KOG4162|consen  786 SN  787 (799)
T ss_pred             CC
Confidence            65

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=4.9e-21  Score=187.41  Aligned_cols=405  Identities=14%  Similarity=0.072  Sum_probs=310.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q 004249          129 HILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN  208 (765)
Q Consensus       129 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  208 (765)
                      ...|...+..|+++.|+.+|..++.++|.+...+.+...+|..+|+|++|+.--.+.++++|+.+..|..+|..+.-+|+
T Consensus         6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~   85 (539)
T KOG0548|consen    6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD   85 (539)
T ss_pred             HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence            45688889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------------------HHHHHHHHHHHHhcCCCCCCHH
Q 004249          209 FQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ------------------------IESSVDILEDYLKGHPTEADFG  264 (765)
Q Consensus       209 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------------------------~~~A~~~~~~~~~~~p~~~~~~  264 (765)
                      |++|+..|.+.++.+|++...+..++.++.....                        .+.+.......+..+|.+..  
T Consensus        86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~--  163 (539)
T KOG0548|consen   86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK--  163 (539)
T ss_pred             HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh--
Confidence            9999999999999999999999999888732200                        11111222222223333221  


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHH-------HHh---cCCCC------------c---------cHHHHHHHHHHHHh
Q 004249          265 VIDLLASMLVQMNAYDRVLKHIELVD-------LVY---YSGKE------------L---------LLALKIKAGICHIQ  313 (765)
Q Consensus       265 ~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~---~~~~~------------~---------~~~~~~~l~~~~~~  313 (765)
                      .+..       -.+...|.-.+..+-       ...   +...|            .         .......+|.....
T Consensus       164 ~~l~-------d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk  236 (539)
T KOG0548|consen  164 LYLN-------DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK  236 (539)
T ss_pred             cccc-------cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence            0000       001111111111000       000   00000            0         12235778999999


Q ss_pred             cCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCC-------HHHHHHHHHHHHHhc
Q 004249          314 LGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHND-------GCLHLKIAECSLALK  386 (765)
Q Consensus       314 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~~la~~~~~~g  386 (765)
                      ..++..|+..+..++...  .+...+.+.+-+++..|.+.+.+.....+++.+  ...       ......+|..|...+
T Consensus       237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g--re~rad~klIak~~~r~g~a~~k~~  312 (539)
T KOG0548|consen  237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG--RELRADYKLIAKALARLGNAYTKRE  312 (539)
T ss_pred             hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh--HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            999999999999998765  667788999999999999999999998887762  221       234445677888899


Q ss_pred             cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcc
Q 004249          387 EREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKG  466 (765)
Q Consensus       387 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  466 (765)
                      +++.|+.+|.+++.....        ..++......+++....+...-.+|.-            ..-....|..+++.|
T Consensus       313 ~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~------------A~e~r~kGne~Fk~g  372 (539)
T KOG0548|consen  313 DYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEK------------AEEEREKGNEAFKKG  372 (539)
T ss_pred             hHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhH------------HHHHHHHHHHHHhcc
Confidence            999999999998876544        445555666667766666555544443            233445699999999


Q ss_pred             hhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccc
Q 004249          467 MIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCN  546 (765)
Q Consensus       467 ~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  546 (765)
                      ++..|+..|.++|.         .+|++...+.+.|.+|.++|.+..|+.-.++++++.    |+........+. ++..
T Consensus       373 dy~~Av~~YteAIk---------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~----p~~~kgy~RKg~-al~~  438 (539)
T KOG0548|consen  373 DYPEAVKHYTEAIK---------RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD----PNFIKAYLRKGA-ALRA  438 (539)
T ss_pred             CHHHHHHHHHHHHh---------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----chHHHHHHHHHH-HHHH
Confidence            99999999999997         789999999999999999999999999999999998    666666666666 9999


Q ss_pred             cCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhh
Q 004249          547 TTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSR  580 (765)
Q Consensus       547 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~  580 (765)
                      ..+|+.|.+.|..+++.+|++..+...+..+...
T Consensus       439 mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  439 MKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            9999999999999999999999988888877764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.90  E-value=1.5e-20  Score=172.61  Aligned_cols=325  Identities=15%  Similarity=0.136  Sum_probs=194.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004249          157 KDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKL  236 (765)
Q Consensus       157 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  236 (765)
                      .+..-.+.+|..++..|++..|+..|..+++.+|++..+++..|.+|...|+-.-|+..+.+++++.|+...+....|.+
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v  115 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV  115 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence            34445555666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC
Q 004249          237 YQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGN  316 (765)
Q Consensus       237 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  316 (765)
                      +.++|.+++|..-|..++..+|++....      ..+.++--.++-.                   ........+...|+
T Consensus       116 llK~Gele~A~~DF~~vl~~~~s~~~~~------eaqskl~~~~e~~-------------------~l~~ql~s~~~~GD  170 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQHEPSNGLVL------EAQSKLALIQEHW-------------------VLVQQLKSASGSGD  170 (504)
T ss_pred             hhhcccHHHHHHHHHHHHhcCCCcchhH------HHHHHHHhHHHHH-------------------HHHHHHHHHhcCCc
Confidence            6666666666666666666666543200      0000000000000                   01111222344455


Q ss_pred             hhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 004249          317 TDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFY  396 (765)
Q Consensus       317 ~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  396 (765)
                      ...|+.....++... |.+...+...+.+|...|+...|+.-+..+.++  ..++.+.++.++.+++..|+.+.++...+
T Consensus       171 ~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL--s~DnTe~~ykis~L~Y~vgd~~~sL~~iR  247 (504)
T KOG0624|consen  171 CQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKL--SQDNTEGHYKISQLLYTVGDAENSLKEIR  247 (504)
T ss_pred             hhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--cccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            555555555555444 455555555556666666666666666555555  45555556666666666666666666666


Q ss_pred             HHHHHcCCCHHHHHH------------HHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHh
Q 004249          397 KALQILEDNIDARLT------------LASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKA  464 (765)
Q Consensus       397 ~al~~~p~~~~~~~~------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  464 (765)
                      .+++++|+....+-.            -+.-..+.+++.++++..++.++.+|....        ....++..++.++..
T Consensus       248 ECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~--------ir~~~~r~~c~C~~~  319 (504)
T KOG0624|consen  248 ECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETM--------IRYNGFRVLCTCYRE  319 (504)
T ss_pred             HHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccc--------eeeeeeheeeecccc
Confidence            666665554322111            122234456777777777777777666300        011334466777888


Q ss_pred             cchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhcc
Q 004249          465 KGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGY  526 (765)
Q Consensus       465 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  526 (765)
                      .|++.+|++...+++.         .+|++.+++...+.+|.-...|+.|+.-|++|.++++
T Consensus       320 d~~~~eAiqqC~evL~---------~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~  372 (504)
T KOG0624|consen  320 DEQFGEAIQQCKEVLD---------IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE  372 (504)
T ss_pred             cCCHHHHHHHHHHHHh---------cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence            8888888888888876         7788888888888888888888888888888888773

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.88  E-value=1.4e-18  Score=177.10  Aligned_cols=428  Identities=16%  Similarity=0.128  Sum_probs=228.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Q 004249          158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLC--PENIEALKMGAK  235 (765)
Q Consensus       158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~  235 (765)
                      ++..|..+.......|++..+.++|++++...-...+.|+.++.++...|.-..|+..++..+...  |.++..+...+.
T Consensus       322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask  401 (799)
T KOG4162|consen  322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK  401 (799)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence            344444455555555555555555555554444444555555555555555555555555555544  444444443333


Q ss_pred             HHH-HcCCHHHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHhcCCCCcc
Q 004249          236 LYQ-KSGQIESSVDILEDYLKGH---PTEADFGVIDLLASMLVQM-----------NAYDRVLKHIELVDLVYYSGKELL  300 (765)
Q Consensus       236 ~~~-~~g~~~~A~~~~~~~~~~~---p~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~  300 (765)
                      ++. ..+.+++++.+..+++...   .+......+..+|.+|-.+           ....+++..++++++.    ++.+
T Consensus       402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~----d~~d  477 (799)
T KOG4162|consen  402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF----DPTD  477 (799)
T ss_pred             HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc----CCCC
Confidence            332 3455555555555555421   1111122344444444322           2344555555555555    4444


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 004249          301 LALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAE  380 (765)
Q Consensus       301 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~  380 (765)
                      +.+.+.++.-|...++.+.|....++++..++..++..|..++.++...+++.+|+.+.+.++..  .|+|.........
T Consensus       478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~~  555 (799)
T KOG4162|consen  478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKIH  555 (799)
T ss_pred             chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhhh
Confidence            45555555555555555555555555555444455555555555555555555555555555554  4444444444444


Q ss_pred             HHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHH---------HHcCCHHHHHHhcCCC--------------CCccc
Q 004249          381 CSLALKEREKSIIYFYKALQILEDNIDARLTLASLL---------LEDAKDEEAISLLTPP--------------MSLEN  437 (765)
Q Consensus       381 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~---------~~~g~~~~A~~~~~~~--------------~~~~~  437 (765)
                      +-...++.++|+......+........+-..+++.-         ...++..+|++....+              .....
T Consensus       556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~  635 (799)
T KOG4162|consen  556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS  635 (799)
T ss_pred             hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence            444455555555555555444332222222211100         0001111111111000              00000


Q ss_pred             cccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHH
Q 004249          438 KYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKI  517 (765)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  517 (765)
                      ....|.....|+....+|...+..+...+..+++...+.++-.         .+|.....++..|.++...|+.++|.+.
T Consensus       636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---------~~~l~~~~~~~~G~~~~~~~~~~EA~~a  706 (799)
T KOG4162|consen  636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---------IDPLSASVYYLRGLLLEVKGQLEEAKEA  706 (799)
T ss_pred             ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---------cchhhHHHHHHhhHHHHHHHhhHHHHHH
Confidence            1111223335555566677777777777777777666666654         5566666777777777777777777777


Q ss_pred             HHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHH--HHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHH
Q 004249          518 INLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFD--GVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNV  595 (765)
Q Consensus       518 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~--~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  595 (765)
                      |..++.+.    |+++.....++. ++...|+...|..  .++.+++.+|.++.+|+                       
T Consensus       707 f~~Al~ld----P~hv~s~~Ala~-~lle~G~~~la~~~~~L~dalr~dp~n~eaW~-----------------------  758 (799)
T KOG4162|consen  707 FLVALALD----PDHVPSMTALAE-LLLELGSPRLAEKRSLLSDALRLDPLNHEAWY-----------------------  758 (799)
T ss_pred             HHHHHhcC----CCCcHHHHHHHH-HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHH-----------------------
Confidence            77777766    555556656665 6666666666665  66666666666665555                       


Q ss_pred             HHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHH
Q 004249          596 RAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLIN  640 (765)
Q Consensus       596 ~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  640 (765)
                                  .+|.++...|+.+.|.+.|+-++++.+.+|+.-
T Consensus       759 ------------~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~p  791 (799)
T KOG4162|consen  759 ------------YLGEVFKKLGDSKQAAECFQAALQLEESNPVLP  791 (799)
T ss_pred             ------------HHHHHHHHccchHHHHHHHHHHHhhccCCCccc
Confidence                        457777788889999999999999999998754

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=4.8e-17  Score=156.20  Aligned_cols=457  Identities=13%  Similarity=0.061  Sum_probs=377.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL  169 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  169 (765)
                      .+..++.-|.--..++++..|..+|++++..+..+...|...+.+-++......|...+.+++.+-|.-...|+....+-
T Consensus        72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE  151 (677)
T KOG1915|consen   72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME  151 (677)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            45667777777788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004249          170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDI  249 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  249 (765)
                      -.+|+...|.++|++.+.-.| +..+|......-.+.+..+.|..+|++.+-.+|+ ...|...+..-.+.|+..-|..+
T Consensus       152 E~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~V  229 (677)
T KOG1915|consen  152 EMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSV  229 (677)
T ss_pred             HHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHH
Confidence            999999999999999999988 5688888889999999999999999999988874 56788999999999999999999


Q ss_pred             HHHHHhcCCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCh---hHHH----
Q 004249          250 LEDYLKGHPTEAD-FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNT---DKAE----  321 (765)
Q Consensus       250 ~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~----  321 (765)
                      |+++++...++.. -..+...+..-..+..++.|..+|+-++...|.+  ....++-.....--+-|+.   +.++    
T Consensus       230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~--raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR  307 (677)
T KOG1915|consen  230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG--RAEELYKKYTAFEKQFGDKEGIEDAIVGKR  307 (677)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence            9999987666543 2244467777788889999999999999885532  2234444444444445553   3332    


Q ss_pred             -HHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCH---------HHHHHHHHH-HHHhccHHH
Q 004249          322 -ILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDG---------CLHLKIAEC-SLALKEREK  390 (765)
Q Consensus       322 -~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~~la~~-~~~~g~~~~  390 (765)
                       -.|+..+..+ |.+-++|+..-.+....|+.+.-.+.|++++..  .|...         .+|.+.+.. -....+.+.
T Consensus       308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan--vpp~~ekr~W~RYIYLWinYalyeEle~ed~er  384 (677)
T KOG1915|consen  308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN--VPPASEKRYWRRYIYLWINYALYEELEAEDVER  384 (677)
T ss_pred             hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence             2355566666 888999999999999999999999999999977  44322         122222221 234678999


Q ss_pred             HHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcc
Q 004249          391 SIIYFYKALQILEDN----IDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKG  466 (765)
Q Consensus       391 A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  466 (765)
                      +.+.|+.++++-|..    ...|...+....++.+...|.+++-.++...|..             .++-....+-.+.+
T Consensus       385 tr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-------------KlFk~YIelElqL~  451 (677)
T KOG1915|consen  385 TRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-------------KLFKGYIELELQLR  451 (677)
T ss_pred             HHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-------------hHHHHHHHHHHHHh
Confidence            999999999998875    3678888888889999999999999999999987             67777777888899


Q ss_pred             hhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccc
Q 004249          467 MIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCN  546 (765)
Q Consensus       467 ~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  546 (765)
                      .++.....|.+.+.         ..|++..++...|..-..+|+.+.|..+|+-|+....   -+.|..++....+.-..
T Consensus       452 efDRcRkLYEkfle---------~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~---ldmpellwkaYIdFEi~  519 (677)
T KOG1915|consen  452 EFDRCRKLYEKFLE---------FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA---LDMPELLWKAYIDFEIE  519 (677)
T ss_pred             hHHHHHHHHHHHHh---------cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc---cccHHHHHHHhhhhhhh
Confidence            99999999999986         7899999999999999999999999999998887442   24467777777777788


Q ss_pred             cCChhhHHHHHHHHHHhCCCchhhhHHHHHHHh
Q 004249          547 TTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVS  579 (765)
Q Consensus       547 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  579 (765)
                      .|.++.|...|+++|+..+... +|..++..-.
T Consensus       520 ~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~  551 (677)
T KOG1915|consen  520 EGEFEKARALYERLLDRTQHVK-VWISFAKFEA  551 (677)
T ss_pred             cchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence            9999999999999999988765 8888877654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=2.1e-18  Score=162.57  Aligned_cols=449  Identities=12%  Similarity=0.013  Sum_probs=297.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--------------------CCCchHHHHHHHHHHHcCCHHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLE--------------------EELPNSYHILGLVHDALGNTAKAMGCYW  149 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~  149 (765)
                      ....+...+...+....|..|...|..++.+.                    |.+.+..+..+.||...++-+.|+....
T Consensus        42 ~yqll~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~  121 (564)
T KOG1174|consen   42 EYQVLLYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLL  121 (564)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHh
Confidence            34444455677778888889999888887642                    2334667888999999999999998877


Q ss_pred             HHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 004249          150 LAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA  229 (765)
Q Consensus       150 ~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  229 (765)
                      ...... ..+.....++..+-.-++..++.-.+...+...|--......+...  ...-++.+- .--.++...|..++.
T Consensus       122 ~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l--~v~g~e~~S-~~m~~~~~~~~~dwl  197 (564)
T KOG1174|consen  122 QVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLEL--GVNGNEINS-LVMHAATVPDHFDWL  197 (564)
T ss_pred             cCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHH--hhcchhhhh-hhhhheecCCCccHH
Confidence            654432 3455666677777777776677666666666544222221111111  111111111 111223334444332


Q ss_pred             H---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHH
Q 004249          230 L---KMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIK  306 (765)
Q Consensus       230 ~---~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  306 (765)
                      +   ..++.++....-+..+..++-.-....|++..  .+..+|.+++..|++++|+..|+++.-.    +|......-.
T Consensus       198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~Nvh--Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~----dpy~i~~MD~  271 (564)
T KOG1174|consen  198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEH--LMMALGKCLYYNGDYFQAEDIFSSTLCA----NPDNVEAMDL  271 (564)
T ss_pred             HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHH--HHHHHhhhhhhhcCchHHHHHHHHHhhC----ChhhhhhHHH
Confidence            2   12233333333344444445555556677666  5667788888888888888888887777    6666666666


Q ss_pred             HHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhc
Q 004249          307 AGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALK  386 (765)
Q Consensus       307 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  386 (765)
                      .|..+...|+++.-..+...++... .....-|+.-+.+++..+++..|+.+-++++..  +|.+..++...|.++...|
T Consensus       272 Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~  348 (564)
T KOG1174|consen  272 YAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALE  348 (564)
T ss_pred             HHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhcc
Confidence            7777777777777777666665443 334556666677777778888888888888887  7888888888888888888


Q ss_pred             cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHH-HHHH-h
Q 004249          387 EREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLC-RIYK-A  464 (765)
Q Consensus       387 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~-~  464 (765)
                      +.++|+-.|+.+..+.|-..+.+..|..+|...|++.+|.-.-+.++..-|.+            ++.+..+| .+.. .
T Consensus       349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s------------A~~LtL~g~~V~~~d  416 (564)
T KOG1174|consen  349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS------------ARSLTLFGTLVLFPD  416 (564)
T ss_pred             chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc------------hhhhhhhcceeeccC
Confidence            88888888888888888888888888888888888888877777776666655            44444553 3322 2


Q ss_pred             cchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcc
Q 004249          465 KGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIP  544 (765)
Q Consensus       465 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  544 (765)
                      -.--++|...+.+.++         ..|.-..+.+.++..+...|++++++.++++.+...    |+  ..+...++++.
T Consensus       417 p~~rEKAKkf~ek~L~---------~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~----~D--~~LH~~Lgd~~  481 (564)
T KOG1174|consen  417 PRMREKAKKFAEKSLK---------INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF----PD--VNLHNHLGDIM  481 (564)
T ss_pred             chhHHHHHHHHHhhhc---------cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc----cc--cHHHHHHHHHH
Confidence            2234566666766665         677777888888888888888888888888888766    22  23444555577


Q ss_pred             cccCChhhHHHHHHHHHHhCCCchhhhHHHHHHH
Q 004249          545 CNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLV  578 (765)
Q Consensus       545 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~  578 (765)
                      ...+.+.+|.+.|..++..+|++......+-.+-
T Consensus       482 ~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lE  515 (564)
T KOG1174|consen  482 RAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLE  515 (564)
T ss_pred             HHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            7788888888888888888888877777665443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.88  E-value=4.9e-22  Score=197.00  Aligned_cols=263  Identities=20%  Similarity=0.206  Sum_probs=110.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004249          163 KLIFPWLIEQGDTTWAMSCLSEAVKA--DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS  240 (765)
Q Consensus       163 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  240 (765)
                      ..+|.++...|++++|+.++.+.+..  .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            35677777778888888877554433  367777777777777778888888888888877777777777777777 677


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHH
Q 004249          241 GQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKA  320 (765)
Q Consensus       241 g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  320 (765)
                      +++++|+.+++++.+..++ +.  .+...+.++...++++++...++++...  ...+.+...+..+|.++.+.|+.++|
T Consensus        91 ~~~~~A~~~~~~~~~~~~~-~~--~l~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A  165 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERDGD-PR--YLLSALQLYYRLGDYDEAEELLEKLEEL--PAAPDSARFWLALAEIYEQLGDPDKA  165 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH---T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred             ccccccccccccccccccc-cc--hhhHHHHHHHHHhHHHHHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            7788888777777765543 22  3456667777778888888887776654  11245666777778888888888888


Q ss_pred             HHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004249          321 EILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQ  400 (765)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  400 (765)
                      +..+++++... |+++.+...++.++...|+++++...+......  .|.++..+..+|.++..+|++++|+.+|++++.
T Consensus       166 ~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~  242 (280)
T PF13429_consen  166 LRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALK  242 (280)
T ss_dssp             HHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccc
Confidence            88888887776 788888889999999999999988888888777  678888889999999999999999999999999


Q ss_pred             HcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCC
Q 004249          401 ILEDNIDARLTLASLLLEDAKDEEAISLLTPPMS  434 (765)
Q Consensus       401 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  434 (765)
                      .+|+++.....+|.++...|+.++|..+..++..
T Consensus       243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HSTT-HHHHHHHHHHHT-----------------
T ss_pred             cccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999998887765

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=5.6e-18  Score=159.76  Aligned_cols=413  Identities=13%  Similarity=0.033  Sum_probs=274.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 004249          189 DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDL  268 (765)
Q Consensus       189 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~  268 (765)
                      .|.+.+.....+.+|...++-+.|+..+....... ..+.....++..+..-++-.++.-.+...+...|--     +..
T Consensus        93 ~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~a-----L~~  166 (564)
T KOG1174|consen   93 EFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMA-----LQV  166 (564)
T ss_pred             CcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchH-----HHH
Confidence            34455566666667777777666666655443211 123444555555555555445544455554444421     111


Q ss_pred             HHHHH-HHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHH
Q 004249          269 LASML-VQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFK  347 (765)
Q Consensus       269 l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~  347 (765)
                      ++-.. ....-++.+--... .+.. ++..+.........+.++.....+.-+..++-...... +.+...+..+|.++.
T Consensus       167 i~~ll~l~v~g~e~~S~~m~-~~~~-~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~l-r~NvhLl~~lak~~~  243 (564)
T KOG1174|consen  167 IEALLELGVNGNEINSLVMH-AATV-PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTL-RCNEHLMMALGKCLY  243 (564)
T ss_pred             HHHHHHHhhcchhhhhhhhh-heec-CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccC-CccHHHHHHHhhhhh
Confidence            11111 11111111111100 0111 11111111112222333332223333333333333333 777888888888888


Q ss_pred             ccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004249          348 NRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAIS  427 (765)
Q Consensus       348 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  427 (765)
                      ..|++++|+..|+++..+  +|......-..|.++...|+++.-.......+........-|+--+..++..+++..|+.
T Consensus       244 ~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~  321 (564)
T KOG1174|consen  244 YNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALN  321 (564)
T ss_pred             hhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHH
Confidence            888888888888888877  788888777788888888888888888888887776777778888888888888888888


Q ss_pred             hcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHh
Q 004249          428 LLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLAS  507 (765)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~  507 (765)
                      +-+++++.++.+            ..++...|.++...|+.++|+-.|..+..         ..|-..+.+..+..+|..
T Consensus       322 ~~eK~I~~~~r~------------~~alilKG~lL~~~~R~~~A~IaFR~Aq~---------Lap~rL~~Y~GL~hsYLA  380 (564)
T KOG1174|consen  322 FVEKCIDSEPRN------------HEALILKGRLLIALERHTQAVIAFRTAQM---------LAPYRLEIYRGLFHSYLA  380 (564)
T ss_pred             HHHHHhccCccc------------chHHHhccHHHHhccchHHHHHHHHHHHh---------cchhhHHHHHHHHHHHHh
Confidence            888888888877            67778888888888888888877777765         667788888888888888


Q ss_pred             hhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhc-ccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhh
Q 004249          508 LHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQI-PCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFS  586 (765)
Q Consensus       508 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~  586 (765)
                      .|++.+|.-..+.+++..    |.+...+-.+|..+ ...-.--++|...+++.+...|....+.+..+.+...-|.. .
T Consensus       381 ~~~~kEA~~~An~~~~~~----~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~-~  455 (564)
T KOG1174|consen  381 QKRFKEANALANWTIRLF----QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPT-K  455 (564)
T ss_pred             hchHHHHHHHHHHHHHHh----hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCcc-c
Confidence            888888888888888877    66666666665333 34455567888889999999998888888887777665544 4


Q ss_pred             HHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHH
Q 004249          587 KHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLI  639 (765)
Q Consensus       587 ~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  639 (765)
                      ...+.+.+.+..+|++ ..+..+|.++...+.+++|+.+|..|++++|++.-.
T Consensus       456 D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s  507 (564)
T KOG1174|consen  456 DIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT  507 (564)
T ss_pred             hHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence            5677777778777755 467889999999999999999999999999998443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.87  E-value=8.5e-22  Score=195.27  Aligned_cols=260  Identities=20%  Similarity=0.300  Sum_probs=71.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 004249           96 GDASLHYALGRYEEAISVLHEVIRL--EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG  173 (765)
Q Consensus        96 ~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  173 (765)
                      ..|.+++..|++++|++++.+.+..  .|+++..|..+|.+....|+++.|+..|++++..++.++..+..++.+ ...+
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~   91 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG   91 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            3355555555555555555443322  245555555555555555555555555555555555555555555554 4555


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004249          174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLC--PENIEALKMGAKLYQKSGQIESSVDILE  251 (765)
Q Consensus       174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~  251 (765)
                      ++++|+.+++++.+.. .++..+.....++...++++++...+.++....  |.++..+..+|.++.+.|++++|+..++
T Consensus        92 ~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~  170 (280)
T PF13429_consen   92 DPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR  170 (280)
T ss_dssp             ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             cccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5555555555555433 234444445555555555555555555544333  3445555555555555555555555555


Q ss_pred             HHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC
Q 004249          252 DYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN  331 (765)
Q Consensus       252 ~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  331 (765)
                      ++++.+|+++.  +...++.++...|+++++...++.....                                      .
T Consensus       171 ~al~~~P~~~~--~~~~l~~~li~~~~~~~~~~~l~~~~~~--------------------------------------~  210 (280)
T PF13429_consen  171 KALELDPDDPD--ARNALAWLLIDMGDYDEAREALKRLLKA--------------------------------------A  210 (280)
T ss_dssp             HHHHH-TT-HH--HHHHHHHHHCTTCHHHHHHHHHHHHHHH---------------------------------------
T ss_pred             HHHHcCCCCHH--HHHHHHHHHHHCCChHHHHHHHHHHHHH--------------------------------------C
Confidence            55555555544  3445555555555555555555544444                                      2


Q ss_pred             CCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004249          332 VSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQ  400 (765)
Q Consensus       332 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  400 (765)
                       |.++..+..+|.++...|++++|+.+|++++..  .|+++..+..+|.++...|+.++|..++++++.
T Consensus       211 -~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  211 -PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             -HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT-----------------
T ss_pred             -cCHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccccccccccc
Confidence             333445555555555555555555555555555  555555555555555555555555555555543

>TIGR00540 hemY_coli hemY protein

Probab=99.87  E-value=9.7e-19  Score=182.29  Aligned_cols=299  Identities=14%  Similarity=0.066  Sum_probs=153.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHH
Q 004249           93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS-SLWKLIFPWLIE  171 (765)
Q Consensus        93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~  171 (765)
                      ..+.+|...+..|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|++. .+....+.++..
T Consensus        86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~  165 (409)
T TIGR00540        86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA  165 (409)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence            3455566666666666666666666666665555555666666666666666666666666555553 344445666666


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHHHHH
Q 004249          172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK----MGAKLYQKSGQIESSV  247 (765)
Q Consensus       172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~A~  247 (765)
                      .|+++.|...++++++..|+++.++..++.++...|++++|...+.+..+....++....    ....-+...+..+++.
T Consensus       166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~  245 (409)
T TIGR00540       166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI  245 (409)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            666666666666666666666666666666666666666666666666655333322211    1111112233333344


Q ss_pred             HHHHHHHhcCCCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHH--HHHHHHHHhcCChhHHHHH
Q 004249          248 DILEDYLKGHPTE--ADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALK--IKAGICHIQLGNTDKAEIL  323 (765)
Q Consensus       248 ~~~~~~~~~~p~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~  323 (765)
                      ..+..+....|..  ....++..++..+...|++++|...++++++..    |.+....  ..........++.+.+...
T Consensus       246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----pd~~~~~~~~l~~~~~l~~~~~~~~~~~  321 (409)
T TIGR00540       246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----GDDRAISLPLCLPIPRLKPEDNEKLEKL  321 (409)
T ss_pred             HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC----CCcccchhHHHHHhhhcCCCChHHHHHH
Confidence            4555555555421  112245556666666666666666666666652    2221110  1111112223444444444


Q ss_pred             HHhhcccCCCChH--HHHHHHHHHHHccccHHHHHHHHHH--HHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004249          324 LTAIHWENVSDHA--ESINEIADLFKNRELYSTALKYYHM--LEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKAL  399 (765)
Q Consensus       324 ~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  399 (765)
                      +++.++.. |+++  .+...+|+++...|++++|.++|++  +.+.  .|+... +..+|.++.+.|+.++|.+++++++
T Consensus       322 ~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~--~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       322 IEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE--QLDAND-LAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc--CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44444433 4444  4444455555555555555555552  2222  333222 3344555555555555555555443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK12370 invasion protein regulator; Provisional

Probab=99.86  E-value=1.4e-19  Score=195.83  Aligned_cols=271  Identities=12%  Similarity=-0.017  Sum_probs=214.0

Q ss_pred             hhCCCch--HHHHHHHHHHHc---CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHH
Q 004249          120 LEEELPN--SYHILGLVHDAL---GNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQ---------GDTTWAMSCLSEA  185 (765)
Q Consensus       120 ~~p~~~~--~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a  185 (765)
                      ..|.+.+  .++..|......   +.+++|+.+|+++++++|+++.++..+|.++...         +++++|+..++++
T Consensus       251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A  330 (553)
T PRK12370        251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA  330 (553)
T ss_pred             CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence            4455544  244455544433   3467899999999999999999998888877643         3478999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHH
Q 004249          186 VKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGV  265 (765)
Q Consensus       186 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  265 (765)
                      ++++|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++.+|.++.  .
T Consensus       331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~--~  408 (553)
T PRK12370        331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA--A  408 (553)
T ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh--h
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999776  3


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHH
Q 004249          266 IDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADL  345 (765)
Q Consensus       266 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~  345 (765)
                      +..++.+++..|++++|+..+++++...   .|.....+..+|.++...|++++|...+.++.... +........++..
T Consensus       409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~---~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~  484 (553)
T PRK12370        409 GITKLWITYYHTGIDDAIRLGDELRSQH---LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAE  484 (553)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhc---cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHH
Confidence            4456666777899999999999988762   24566678889999999999999999998876554 6677788888888


Q ss_pred             HHccccHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc
Q 004249          346 FKNRELYSTALKYYHMLEANA-GVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL  402 (765)
Q Consensus       346 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  402 (765)
                      +...|+  .|...++++++.. ..+.++   .....++.-.|+.+.+..+ +++.+.+
T Consensus       485 ~~~~g~--~a~~~l~~ll~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        485 YCQNSE--RALPTIREFLESEQRIDNNP---GLLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             HhccHH--HHHHHHHHHHHHhhHhhcCc---hHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence            888884  7777777766541 023332   2377888888888888887 7666543

>TIGR00540 hemY_coli hemY protein

Probab=99.86  E-value=5.6e-19  Score=184.07  Aligned_cols=305  Identities=16%  Similarity=0.080  Sum_probs=252.3

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF-KLKFHLASLYV  204 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~  204 (765)
                      ......|......|+++.|.+.+.++.+..|+....+...|.++...|+++.|..++.++.+..|++. .+....+.++.
T Consensus        85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l  164 (409)
T TIGR00540        85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL  164 (409)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence            34456788889999999999999999999998888888899999999999999999999999888875 56677899999


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-H-HHHHHHHHHHHHhccHHHH
Q 004249          205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-F-GVIDLLASMLVQMNAYDRV  282 (765)
Q Consensus       205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~-~~~~~l~~~~~~~~~~~~A  282 (765)
                      ..|+++.|...++++.+..|+++.++..++.++...|++++|...+.+..+..+.++. . ........-+...+..+++
T Consensus       165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~  244 (409)
T TIGR00540       165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG  244 (409)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999987544332 1 0111222222444555666


Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHH--HHHHHHHHccccHHHHHHHHH
Q 004249          283 LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESI--NEIADLFKNRELYSTALKYYH  360 (765)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~  360 (765)
                      ...+..+....+...+....++..++..+...|++++|...+++.++.. |++....  ..........++.+.++..++
T Consensus       245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e  323 (409)
T TIGR00540       245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIE  323 (409)
T ss_pred             HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence            6788888777443344678899999999999999999999999999877 4444321  222333355688899999999


Q ss_pred             HHHhccCCCCCH--HHHHHHHHHHHHhccHHHHHHHHH--HHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCC
Q 004249          361 MLEANAGVHNDG--CLHLKIAECSLALKEREKSIIYFY--KALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMS  434 (765)
Q Consensus       361 ~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  434 (765)
                      +.++.  .|+++  ..+..+|+++.+.|++++|.++|+  .+++..|+... ...+|.++.+.|+.++|.+++++++.
T Consensus       324 ~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       324 KQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999  99999  889999999999999999999999  57778887655 55999999999999999999987644

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.86  E-value=9e-18  Score=167.83  Aligned_cols=273  Identities=14%  Similarity=0.029  Sum_probs=227.3

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE  205 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  205 (765)
                      ..++..+.-.+..++|.+.++..+..+...|++++.+...|..+..+|+.++|..+...++..++.+..+|..+|.++..
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~   87 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS   87 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence            34555556666779999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 004249          206 LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKH  285 (765)
Q Consensus       206 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~  285 (765)
                      ..+|++|+++|+.|+.+.|+|..++..++.+..++++++.....-.+.++..|....  .|..++..+.-.|++..|...
T Consensus        88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra--~w~~~Avs~~L~g~y~~A~~i  165 (700)
T KOG1156|consen   88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRA--SWIGFAVAQHLLGEYKMALEI  165 (700)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998876  688999999999999999999


Q ss_pred             HHHHHHHhcCCCCcc-----HHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHH
Q 004249          286 IELVDLVYYSGKELL-----LALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYH  360 (765)
Q Consensus       286 ~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  360 (765)
                      ++...+... ..+..     .........+....|.+++|.+.+...-... -+........+.++++.+++++|...|.
T Consensus       166 l~ef~~t~~-~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~  243 (700)
T KOG1156|consen  166 LEEFEKTQN-TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYR  243 (700)
T ss_pred             HHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence            998887742 11221     2234444567788899999998887753222 3334456677899999999999999999


Q ss_pred             HHHhccCCCCCHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHcCC
Q 004249          361 MLEANAGVHNDGCLHLKIAECSLALKEREKSI-IYFYKALQILED  404 (765)
Q Consensus       361 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~  404 (765)
                      .++..  .|++...+..+-.++..-.+--+++ ..|...-+..|.
T Consensus       244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r  286 (700)
T KOG1156|consen  244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR  286 (700)
T ss_pred             HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence            99998  9999988888877776444444444 555555544443

>PRK12370 invasion protein regulator; Provisional

Probab=99.85  E-value=7.4e-19  Score=190.14  Aligned_cols=251  Identities=12%  Similarity=0.012  Sum_probs=157.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 004249          173 GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL---------GNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQI  243 (765)
Q Consensus       173 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  243 (765)
                      +.+++|+.+|+++++.+|+++.++..+|.++...         +++++|+..++++++++|+++.++..+|.++...|++
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~  354 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY  354 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence            3456777777777777777777766666665533         2366777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHH
Q 004249          244 ESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEIL  323 (765)
Q Consensus       244 ~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  323 (765)
                      ++|+..|+++++.+|++..  +++.+|.++...|++++|+..++++++.    +|........++.+++..|++++|+..
T Consensus       355 ~~A~~~~~~Al~l~P~~~~--a~~~lg~~l~~~G~~~eAi~~~~~Al~l----~P~~~~~~~~~~~~~~~~g~~eeA~~~  428 (553)
T PRK12370        355 IVGSLLFKQANLLSPISAD--IKYYYGWNLFMAGQLEEALQTINECLKL----DPTRAAAGITKLWITYYHTGIDDAIRL  428 (553)
T ss_pred             HHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence            7777777777777776655  5666777777777777777777777766    444444444444455566677777777


Q ss_pred             HHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcC
Q 004249          324 LTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILE  403 (765)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  403 (765)
                      +++++...+|.++..+..+|.++...|++++|...+.++...  .|....++..++..|...|+  .|...++++++...
T Consensus       429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~  504 (553)
T PRK12370        429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQ  504 (553)
T ss_pred             HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhh
Confidence            776665544556666666777777777777777777666555  56666666666666666663  55555555444332


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHhcCCCCC
Q 004249          404 DNIDARLTLASLLLEDAKDEEAISLLTPPMS  434 (765)
Q Consensus       404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  434 (765)
                      ....-......++.-.|+.+.+... +++.+
T Consensus       505 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~  534 (553)
T PRK12370        505 RIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN  534 (553)
T ss_pred             HhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence            2222222255556566666655554 44444

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.85  E-value=5.8e-20  Score=167.67  Aligned_cols=274  Identities=13%  Similarity=0.058  Sum_probs=237.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHhccC---CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004249          133 LVHDALGNTAKAMGCYWLAACYK---QK-------DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL  202 (765)
Q Consensus       133 ~~~~~~g~~~~A~~~~~~a~~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  202 (765)
                      .+++..++...|-......++.+   |.       +......+|.||..+|.+.+|.+.++.+++..| .++.+..++.+
T Consensus       187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskv  265 (478)
T KOG1129|consen  187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKV  265 (478)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHH
Confidence            35566777777776655554432   21       112224599999999999999999999999776 68899999999


Q ss_pred             HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHH
Q 004249          203 YVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRV  282 (765)
Q Consensus       203 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A  282 (765)
                      |.+..+...|+..+.+.+...|.+...+...++++..++++++|.++|+.+++.+|.+.+  +.-.++.-|+..++++-|
T Consensus       266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE--aiAcia~~yfY~~~PE~A  343 (478)
T KOG1129|consen  266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE--AIACIAVGYFYDNNPEMA  343 (478)
T ss_pred             HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce--eeeeeeeccccCCChHHH
Confidence            999999999999999999999999999999999999999999999999999999999988  445788889999999999


Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC--CCChHHHHHHHHHHHHccccHHHHHHHHH
Q 004249          283 LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN--VSDHAESINEIADLFKNRELYSTALKYYH  360 (765)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~  360 (765)
                      +.+|+++++.    ...+++.+.++|.|++..++++-++..|++++...  +..-.++|+++|.+....|++.-|..+|+
T Consensus       344 lryYRRiLqm----G~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfr  419 (478)
T KOG1129|consen  344 LRYYRRILQM----GAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFR  419 (478)
T ss_pred             HHHHHHHHHh----cCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHH
Confidence            9999999999    77889999999999999999999999999987433  24457899999999999999999999999


Q ss_pred             HHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004249          361 MLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASL  415 (765)
Q Consensus       361 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  415 (765)
                      -++..  ++++.+++.++|.+-.+.|+.++|..++..+-...|.-.+..++++.+
T Consensus       420 laL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~  472 (478)
T KOG1129|consen  420 LALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM  472 (478)
T ss_pred             HHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence            99988  899999999999999999999999999999999999877776665543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.85  E-value=1.4e-19  Score=165.14  Aligned_cols=280  Identities=14%  Similarity=0.100  Sum_probs=249.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---CC-------CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 004249           92 RRMLGDASLHYALGRYEEAISVLHEVIRLE---EE-------LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSL  161 (765)
Q Consensus        92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~  161 (765)
                      ..+|.  .+++...+...|-......+..+   |.       +...-..+|.||+.+|-+.+|.+.++.++...| .++.
T Consensus       182 kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dT  258 (478)
T KOG1129|consen  182 KALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDT  258 (478)
T ss_pred             HHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhH
Confidence            34455  56788888888888877776653   21       123345789999999999999999999998775 6788


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004249          162 WKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSG  241 (765)
Q Consensus       162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  241 (765)
                      +..|+.+|.+..+...|+..+...++..|.+...+..++.++..++++++|.++|+.+++.+|.+.++.-.+|.-|+..+
T Consensus       259 fllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~  338 (478)
T KOG1129|consen  259 FLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDN  338 (478)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHH
Q 004249          242 QIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAE  321 (765)
Q Consensus       242 ~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  321 (765)
                      +++-|+.+|+++++..-.++.  .+.++|.+.+..++++-++..|++++... ..+....++|+++|.+....|++..|.
T Consensus       339 ~PE~AlryYRRiLqmG~~spe--Lf~NigLCC~yaqQ~D~~L~sf~RAlsta-t~~~~aaDvWYNlg~vaV~iGD~nlA~  415 (478)
T KOG1129|consen  339 NPEMALRYYRRILQMGAQSPE--LFCNIGLCCLYAQQIDLVLPSFQRALSTA-TQPGQAADVWYNLGFVAVTIGDFNLAK  415 (478)
T ss_pred             ChHHHHHHHHHHHHhcCCChH--HHhhHHHHHHhhcchhhhHHHHHHHHhhc-cCcchhhhhhhccceeEEeccchHHHH
Confidence            999999999999999888887  78899999999999999999999999883 335567889999999999999999999


Q ss_pred             HHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 004249          322 ILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAE  380 (765)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~  380 (765)
                      .+|+-++..+ +++.+++.++|.+-.+.|+.++|..+++.+...  .|.-.+..++++.
T Consensus       416 rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~--~P~m~E~~~Nl~~  471 (478)
T KOG1129|consen  416 RCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV--MPDMAEVTTNLQF  471 (478)
T ss_pred             HHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh--CccccccccceeE
Confidence            9999998877 889999999999999999999999999999888  7877776666554

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.84  E-value=8e-18  Score=174.30  Aligned_cols=293  Identities=13%  Similarity=0.043  Sum_probs=135.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHH-HHHHHHcCCHHHHHHHHHHHhccCCCCHHHH-HHHHHHHHH
Q 004249           94 MLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHIL-GLVHDALGNTAKAMGCYWLAACYKQKDSSLW-KLIFPWLIE  171 (765)
Q Consensus        94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~-~~la~~~~~  171 (765)
                      .+..|...+..|+|+.|.+.+.+..... +++..++.+ +.+....|+++.|..++.++.+.+|++..+. ...+.++..
T Consensus        87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~  165 (398)
T PRK10747         87 QTEQALLKLAEGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA  165 (398)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            4455555666666666665554433322 123333333 3344666666666666666666555554222 233566666


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHHcCCH
Q 004249          172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK--------MGAKLYQKSGQI  243 (765)
Q Consensus       172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~la~~~~~~g~~  243 (765)
                      .|++++|...++++.+..|+++.++..++.+|...|++++|+..+.++.+..+.++....        .+........+.
T Consensus       166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~  245 (398)
T PRK10747        166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS  245 (398)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            666666666666666666666666666666666666666666666666555444322111        111111111222


Q ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHH
Q 004249          244 ESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEIL  323 (765)
Q Consensus       244 ~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  323 (765)
                      +.....++...+..|+++.  +...++..+...|+.++|...++++++.    .+ ........+  .+..++.++++..
T Consensus       246 ~~l~~~w~~lp~~~~~~~~--~~~~~A~~l~~~g~~~~A~~~L~~~l~~----~~-~~~l~~l~~--~l~~~~~~~al~~  316 (398)
T PRK10747        246 EGLKRWWKNQSRKTRHQVA--LQVAMAEHLIECDDHDTAQQIILDGLKR----QY-DERLVLLIP--RLKTNNPEQLEKV  316 (398)
T ss_pred             HHHHHHHHhCCHHHhCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhc----CC-CHHHHHHHh--hccCCChHHHHHH
Confidence            2222333332223333333  3344555555555555555555554443    11 111111111  1122444444444


Q ss_pred             HHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004249          324 LTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQ  400 (765)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  400 (765)
                      +++.++.. |+++..+..+|.++...|++++|..+|+++++.  .|++ ..+..++.++...|+.++|..+|++++.
T Consensus       317 ~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        317 LRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44444433 444444444444444444444444444444444  3432 2233344444444444444444444443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=9.2e-16  Score=147.49  Aligned_cols=475  Identities=12%  Similarity=0.058  Sum_probs=304.7

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249          112 SVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPN  191 (765)
Q Consensus       112 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  191 (765)
                      ..|+..++.+.-+...|...|.--..++++..|...|++|+..+..+...|...+.+-++......|..++.+++.+-|.
T Consensus        60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR  139 (677)
T KOG1915|consen   60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR  139 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence            34555555555555666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 004249          192 DFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLAS  271 (765)
Q Consensus       192 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~  271 (765)
                      -...|+....+-..+|+...|.++|++-+...|+ ..+|......-.+.+..+.|...|++.+-.+|+-.   .|...+.
T Consensus       140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~---~wikyar  215 (677)
T KOG1915|consen  140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVS---NWIKYAR  215 (677)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHH---HHHHHHH
Confidence            6666666666666666666666666666666654 34555555555566666666666666665555432   3556666


Q ss_pred             HHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHcccc
Q 004249          272 MLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNREL  351 (765)
Q Consensus       272 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  351 (765)
                      .-.+.|+..-|..+|++++..++. +...                                   ...+...|..-..++.
T Consensus       216 FE~k~g~~~~aR~VyerAie~~~~-d~~~-----------------------------------e~lfvaFA~fEe~qkE  259 (677)
T KOG1915|consen  216 FEEKHGNVALARSVYERAIEFLGD-DEEA-----------------------------------EILFVAFAEFEERQKE  259 (677)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHhhh-HHHH-----------------------------------HHHHHHHHHHHHHHHH
Confidence            666666666666666666655321 1111                                   1223333333344455


Q ss_pred             HHHHHHHHHHHHhccCCCCC--HHHHHHHHHHHHHhcc---HHHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 004249          352 YSTALKYYHMLEANAGVHND--GCLHLKIAECSLALKE---REKSI-----IYFYKALQILEDNIDARLTLASLLLEDAK  421 (765)
Q Consensus       352 ~~~A~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~---~~~A~-----~~~~~al~~~p~~~~~~~~l~~~~~~~g~  421 (765)
                      ++.|.-+|+-++..  -|.+  ...+..+...-.+-|+   .++++     -.|++.++.+|-|.++|+....+....|+
T Consensus       260 ~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~  337 (677)
T KOG1915|consen  260 YERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGD  337 (677)
T ss_pred             HHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCC
Confidence            55555555555544  3433  2233333333333343   22332     35788889999999999999999999999


Q ss_pred             HHHHHHhcCCCCCccccccCcccchhhhh-hhHHHHHHHHHH-HhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHH
Q 004249          422 DEEAISLLTPPMSLENKYVNSDKTHAWWL-NIRIKIKLCRIY-KAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLII  499 (765)
Q Consensus       422 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~  499 (765)
                      .+.-.+.|++++..-|..    .....|. -+.+|...+..- ....+.+.+.++|+.++.-...     ..-.-..+++
T Consensus       338 ~~~Ire~yErAIanvpp~----~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH-----kkFtFaKiWl  408 (677)
T KOG1915|consen  338 KDRIRETYERAIANVPPA----SEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH-----KKFTFAKIWL  408 (677)
T ss_pred             HHHHHHHHHHHHccCCch----hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc-----ccchHHHHHH
Confidence            999999999988755443    2222332 222333333221 2356778888888888752111     1223466778


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHh
Q 004249          500 DLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVS  579 (765)
Q Consensus       500 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  579 (765)
                      ..+....++.+...|.+++-.|+..+|    .+. .+....- +-.+.++++.....|.+.|...|.+..+|..|+.+-.
T Consensus       409 myA~feIRq~~l~~ARkiLG~AIG~cP----K~K-lFk~YIe-lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~  482 (677)
T KOG1915|consen  409 MYAQFEIRQLNLTGARKILGNAIGKCP----KDK-LFKGYIE-LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELET  482 (677)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHhccCC----chh-HHHHHHH-HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHH
Confidence            888888899999999999999999984    332 2222222 6677899999999999999999999999999999998


Q ss_pred             hhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhh--hhhhhHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 004249          580 RFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQF--TMISHHQDAAREYLEAYKLLPENPLINLCVGT  645 (765)
Q Consensus       580 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~--~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  645 (765)
                      ..|+. +++...+.-++....-+.+-++..+.+-  ...|.+.+|...|++.++..+.-+ +....|.
T Consensus       483 ~Lgdt-dRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~  548 (677)
T KOG1915|consen  483 SLGDT-DRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAK  548 (677)
T ss_pred             HhhhH-HHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHH
Confidence            88887 5666666656655444444444444443  447999999999999999988765 4444443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.84  E-value=9.7e-17  Score=148.42  Aligned_cols=401  Identities=18%  Similarity=0.105  Sum_probs=289.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249          100 LHYALGRYEEAISVLHEVIRLEEELP-NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWA  178 (765)
Q Consensus       100 ~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A  178 (765)
                      -++...+|..|+.+++-.+..+.... .....+|.|++.+|+|++|+..|.-+.+.+.-+.+.+..|+.+++-+|.|.+|
T Consensus        31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA  110 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA  110 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence            35678899999999987775544332 56677899999999999999999998887766778899999999999999999


Q ss_pred             HHHHHHHHhc--------------CC------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004249          179 MSCLSEAVKA--------------DP------------NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKM  232 (765)
Q Consensus       179 ~~~~~~al~~--------------~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  232 (765)
                      .....++-+.              +.            +..+-...++.+.+..-.|++|+++|.+++..+|+....-..
T Consensus       111 ~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy  190 (557)
T KOG3785|consen  111 KSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVY  190 (557)
T ss_pred             HHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHH
Confidence            8876665221              10            111234667778888888999999999999999998888889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH-----------------------
Q 004249          233 GAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELV-----------------------  289 (765)
Q Consensus       233 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-----------------------  289 (765)
                      ++.+|.++.-++-+.+++.-.++..|+++-  +.+..+...++.=+-..|....+..                       
T Consensus       191 ~ALCyyKlDYydvsqevl~vYL~q~pdSti--A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFr  268 (557)
T KOG3785|consen  191 MALCYYKLDYYDVSQEVLKVYLRQFPDSTI--AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFR  268 (557)
T ss_pred             HHHHHHhcchhhhHHHHHHHHHHhCCCcHH--HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEe
Confidence            999999999999999999999999999876  5556666555542222222222221                       


Q ss_pred             -----HHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHcccc-------HHHHHH
Q 004249          290 -----DLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNREL-------YSTALK  357 (765)
Q Consensus       290 -----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~  357 (765)
                           ++..|+--...+++..+++..|+++++.++|..+.+.+    .|..|.-+...|.+....|+       .+-|.+
T Consensus       269 ngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl----~PttP~EyilKgvv~aalGQe~gSreHlKiAqq  344 (557)
T KOG3785|consen  269 NGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL----DPTTPYEYILKGVVFAALGQETGSREHLKIAQQ  344 (557)
T ss_pred             CCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc----CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence                 22222222334677888888889999999999888776    26667666667766665554       344555


Q ss_pred             HHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccc
Q 004249          358 YYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLEN  437 (765)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  437 (765)
                      .|+-+-.....-+.......+|.+++-..++++.+.++...-...-++....+.+++.+...|++.+|.+.|-+....+.
T Consensus       345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i  424 (557)
T KOG3785|consen  345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI  424 (557)
T ss_pred             HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh
Confidence            55443333223333445566788888888899988888887777777888888899999999999999999877666443


Q ss_pred             cccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHH
Q 004249          438 KYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKI  517 (765)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  517 (765)
                      .+           +..-...+|++|...|+++-|.+.+.+.-          ...+....+..++...++.+.+--|.+.
T Consensus       425 kn-----------~~~Y~s~LArCyi~nkkP~lAW~~~lk~~----------t~~e~fsLLqlIAn~CYk~~eFyyaaKA  483 (557)
T KOG3785|consen  425 KN-----------KILYKSMLARCYIRNKKPQLAWDMMLKTN----------TPSERFSLLQLIANDCYKANEFYYAAKA  483 (557)
T ss_pred             hh-----------hHHHHHHHHHHHHhcCCchHHHHHHHhcC----------CchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33           12334578899999999999888776542          2334555666677888888888888888


Q ss_pred             HHHHHHhccC
Q 004249          518 INLILKLGYG  527 (765)
Q Consensus       518 ~~~al~~~~~  527 (765)
                      |...-.+.|.
T Consensus       484 Fd~lE~lDP~  493 (557)
T KOG3785|consen  484 FDELEILDPT  493 (557)
T ss_pred             hhHHHccCCC
Confidence            8877766643

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.83  E-value=4.1e-18  Score=168.67  Aligned_cols=151  Identities=15%  Similarity=0.093  Sum_probs=107.9

Q ss_pred             CCHHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004249          105 GRYEEAISVLHEVIRLEE----ELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMS  180 (765)
Q Consensus       105 g~~~~A~~~~~~~l~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~  180 (765)
                      +..+.++..+.+++...|    ..+..|+.+|.++...|++++|+..|.++++++|+++.+|..+|.++...|++++|+.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            455667777777775433    2245677778887778888888888888888778777778778888888888888888


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004249          181 CLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKG  256 (765)
Q Consensus       181 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  256 (765)
                      .|+++++++|++..++..+|.++...|++++|+..|+++++.+|+++.... ...+....+++++|+..+.+.+..
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhh
Confidence            888888777877777777887777778888888888888777777763211 122334556777777777665544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.83  E-value=1.3e-17  Score=172.81  Aligned_cols=301  Identities=16%  Similarity=0.084  Sum_probs=238.9

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKL-IFPWLIEQGDTTWAMSCLSEAVKADPNDFKL-KFHLASLY  203 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~  203 (765)
                      ...+..|......|++++|.+...+.....+ .+..++. .+.+....|+++.|..++.++.+.+|++..+ ....+.++
T Consensus        85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~  163 (398)
T PRK10747         85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ  163 (398)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            3456678888889999999988888766543 3444444 4666699999999999999999999987543 34559999


Q ss_pred             HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH---HHhccHH
Q 004249          204 VELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASML---VQMNAYD  280 (765)
Q Consensus       204 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~---~~~~~~~  280 (765)
                      ...|+++.|+..++++.+..|+++.++..++.+|...|++++|+..+.++.+..+.++.. .-......+   .......
T Consensus       164 l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~~~a~~~l~~~~~~~  242 (398)
T PRK10747        164 LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLEQQAWIGLMDQAMAD  242 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999998877664331 100111111   1111112


Q ss_pred             HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHH
Q 004249          281 RVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYH  360 (765)
Q Consensus       281 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  360 (765)
                      .....+.+..+..+...+....+...++..+...|+.++|...+++.++.  +.++......+.+  ..++.++++..++
T Consensus       243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~l~~~l--~~~~~~~al~~~e  318 (398)
T PRK10747        243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVLLIPRL--KTNNPEQLEKVLR  318 (398)
T ss_pred             cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHhhc--cCCChHHHHHHHH
Confidence            23344444444434335678889999999999999999999999999873  4455544444443  4599999999999


Q ss_pred             HHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCc
Q 004249          361 MLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSL  435 (765)
Q Consensus       361 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  435 (765)
                      +.++.  .|+++..+..+|.++...|++++|..+|+++++..|++. .+..++.++.+.|+.++|..++++++..
T Consensus       319 ~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        319 QQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             HHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99998  999999999999999999999999999999999999854 4668999999999999999999987654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=6.5e-19  Score=174.20  Aligned_cols=256  Identities=12%  Similarity=0.139  Sum_probs=211.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 004249           94 MLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG  173 (765)
Q Consensus        94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  173 (765)
                      -+..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|
T Consensus       288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg  367 (579)
T KOG1125|consen  288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG  367 (579)
T ss_pred             hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHH-------HHHHHHHhCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHH
Q 004249          174 DTTWAMSCLSEAVKADPNDFKLKFH-------LASLYVELGNFQRAADVYRQMVQLCP--ENIEALKMGAKLYQKSGQIE  244 (765)
Q Consensus       174 ~~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~  244 (765)
                      .-.+|+.++.+.+...|........       ..........+..-.+.|..+....|  .++++...||.+|...|+|+
T Consensus       368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd  447 (579)
T KOG1125|consen  368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD  447 (579)
T ss_pred             hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence            9999999999999877643321110       00011111224445667777777788  78999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHH
Q 004249          245 SSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILL  324 (765)
Q Consensus       245 ~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  324 (765)
                      +|+.+|+.++...|++..  .|+.||-.+....+..+|+..|.+++++    .|....+++++|++++.+|.|++|.++|
T Consensus       448 raiDcf~~AL~v~Pnd~~--lWNRLGAtLAN~~~s~EAIsAY~rALqL----qP~yVR~RyNlgIS~mNlG~ykEA~~hl  521 (579)
T KOG1125|consen  448 RAVDCFEAALQVKPNDYL--LWNRLGATLANGNRSEEAISAYNRALQL----QPGYVRVRYNLGISCMNLGAYKEAVKHL  521 (579)
T ss_pred             HHHHHHHHHHhcCCchHH--HHHHhhHHhcCCcccHHHHHHHHHHHhc----CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence            999999999999999987  8999999999999999999999999999    8888999999999999999999999999


Q ss_pred             HhhcccCCC---------ChHHHHHHHHHHHHccccHHHH
Q 004249          325 TAIHWENVS---------DHAESINEIADLFKNRELYSTA  355 (765)
Q Consensus       325 ~~~~~~~~~---------~~~~~~~~la~~~~~~g~~~~A  355 (765)
                      -.++.....         .+..+|..|-.++...++.+-+
T Consensus       522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l  561 (579)
T KOG1125|consen  522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL  561 (579)
T ss_pred             HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence            887643211         1123555555555555555433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.81  E-value=1.5e-17  Score=145.59  Aligned_cols=208  Identities=17%  Similarity=0.181  Sum_probs=175.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 004249          194 KLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASML  273 (765)
Q Consensus       194 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~  273 (765)
                      .+...||.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+  ++++.|..+
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd--VLNNYG~FL  113 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD--VLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc--hhhhhhHHH
Confidence            567788888888888888888888888888888888888888888888888888888888888888888  788888888


Q ss_pred             HHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHH
Q 004249          274 VQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYS  353 (765)
Q Consensus       274 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  353 (765)
                      +.+|++++|...|++++..  +..+.....+.++|.|.++.|+++.|...|++.+..+ |+.+.....++...+..|++-
T Consensus       114 C~qg~~~eA~q~F~~Al~~--P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~  190 (250)
T COG3063         114 CAQGRPEEAMQQFERALAD--PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYA  190 (250)
T ss_pred             HhCCChHHHHHHHHHHHhC--CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccch
Confidence            8888888888888888876  3456677788888888888888888888888888777 778888888999999999999


Q ss_pred             HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHH
Q 004249          354 TALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDA  408 (765)
Q Consensus       354 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  408 (765)
                      .|..++++....  .+-..+.+....++-...|+.+.+-.+=.+.....|...+.
T Consensus       191 ~Ar~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~  243 (250)
T COG3063         191 PARLYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY  243 (250)
T ss_pred             HHHHHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            999999888777  55677777777888888899988888888888888887654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.81  E-value=2.2e-17  Score=144.61  Aligned_cols=203  Identities=16%  Similarity=0.117  Sum_probs=184.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL  169 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  169 (765)
                      -....+.+|..|++.|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++.+++.+.|..+
T Consensus        34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL  113 (250)
T COG3063          34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence            44567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004249          170 IEQGDTTWAMSCLSEAVKA--DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSV  247 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  247 (765)
                      +.+|++++|...|++++..  .|..+.++.++|.|..+.|+++.|...|+++++.+|+.+.....++..++..|++-.|.
T Consensus       114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence            9999999999999999985  34567889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Q 004249          248 DILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYY  294 (765)
Q Consensus       248 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  294 (765)
                      .++++.....+-.  ...+.....+-...|+-+.+-++=.+....+|
T Consensus       194 ~~~~~~~~~~~~~--A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP  238 (250)
T COG3063         194 LYLERYQQRGGAQ--AESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP  238 (250)
T ss_pred             HHHHHHHhccccc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            9999988877743  33666777788888999888888888777743

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=1.9e-15  Score=149.80  Aligned_cols=470  Identities=13%  Similarity=0.090  Sum_probs=311.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 004249           92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE  171 (765)
Q Consensus        92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  171 (765)
                      ..++.....+...|+|++|+....+++...|++..++.....+..+.++|++|+...+.-..... .....+..+.|.++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEKAYCEYR   91 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHHHHHHHH
Confidence            56677778889999999999999999999999999999999999999999999966554332221 22233788999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004249          172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILE  251 (765)
Q Consensus       172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  251 (765)
                      ++..++|+.+++   ..++.+..+....|++++++|+|++|+.+|+..++.+.++.+.......+-....  ..+ . ..
T Consensus        92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~  164 (652)
T KOG2376|consen   92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LL  164 (652)
T ss_pred             cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HH
Confidence            999999999998   4566777789999999999999999999999999887776554433322211110  011 1 33


Q ss_pred             HHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh----cCCCCc-------cHHHHHHHHHHHHhcCChhHH
Q 004249          252 DYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVY----YSGKEL-------LLALKIKAGICHIQLGNTDKA  320 (765)
Q Consensus       252 ~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~-------~~~~~~~l~~~~~~~~~~~~A  320 (765)
                      +.+...|.+ ....+++.+.++...|+|.+|++.+++++.+.    ..++..       -..+...++.++..+|+.++|
T Consensus       165 q~v~~v~e~-syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea  243 (652)
T KOG2376|consen  165 QSVPEVPED-SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA  243 (652)
T ss_pred             HhccCCCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            334444432 24478899999999999999999999995442    111111       123467788899999999999


Q ss_pred             HHHHHhhcccCCCChHHHH---HHHHHHHHccccHH-HHHHHHHHHHhc--------cCCCCCHHHHHHHHHHHHHhccH
Q 004249          321 EILLTAIHWENVSDHAESI---NEIADLFKNRELYS-TALKYYHMLEAN--------AGVHNDGCLHLKIAECSLALKER  388 (765)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~---~~la~~~~~~g~~~-~A~~~~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~  388 (765)
                      ...|..++..++++.+...   .++..+-....-++ .++..++.....        -.......++.+.+.+.+..+.-
T Consensus       244 ~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~  323 (652)
T KOG2376|consen  244 SSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKM  323 (652)
T ss_pred             HHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            9999999887755543322   22221111111111 222222221111        00111223445555555556655


Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchh
Q 004249          389 EKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMI  468 (765)
Q Consensus       389 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  468 (765)
                      +.+.+.....-...|...-.-........+...+..|..++....+.+|..           ...+.+.++.+...+|++
T Consensus       324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~-----------s~~v~L~~aQl~is~gn~  392 (652)
T KOG2376|consen  324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEK-----------SKVVLLLRAQLKISQGNP  392 (652)
T ss_pred             HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCch-----------hHHHHHHHHHHHHhcCCH
Confidence            555555444433334333222223333333447888999998888876664           246788899999999999


Q ss_pred             HHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCch--HHHHHHHHhhcccc
Q 004249          469 EGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVE--KEELYFLGAQIPCN  546 (765)
Q Consensus       469 ~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~~  546 (765)
                      +.|++++......+.  .++......+.+.-.+-..+.+.++.+-|..++..++.......+..  ...++..++..-.+
T Consensus       393 ~~A~~il~~~~~~~~--ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr  470 (652)
T KOG2376|consen  393 EVALEILSLFLESWK--SSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR  470 (652)
T ss_pred             HHHHHHHHHHhhhhh--hhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence            999999884442110  11112233455556666677888888888888888887654322222  22233333336667


Q ss_pred             cCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhh
Q 004249          547 TTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEK  583 (765)
Q Consensus       547 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  583 (765)
                      .|+-++|...++.+++.+|++..++..+...+....-
T Consensus       471 ~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~  507 (652)
T KOG2376|consen  471 HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDP  507 (652)
T ss_pred             cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCH
Confidence            7999999999999999999999988887777765443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.81  E-value=2.4e-17  Score=163.18  Aligned_cols=241  Identities=14%  Similarity=0.051  Sum_probs=167.6

Q ss_pred             HcCCHHHHHHHHHHHhccCC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH
Q 004249          137 ALGNTAKAMGCYWLAACYKQ---K-DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRA  212 (765)
Q Consensus       137 ~~g~~~~A~~~~~~a~~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  212 (765)
                      ..+..+.++..+.+++...|   . .+..|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            34567888999999986433   3 3577999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          213 ADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       213 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                      +..|+++++++|++..++..+|.++...|++++|+..++++++.+|+++...   ....+....+++++|+..+.+....
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~---~~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA---LWLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHccCCHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999886311   2222344567889999999776644


Q ss_pred             hcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCH
Q 004249          293 YYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDG  372 (765)
Q Consensus       293 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  372 (765)
                      .+   +.   .+ ..+.+....|+..++ ..+..+....                            +....+  .|..+
T Consensus       195 ~~---~~---~~-~~~~~~~~lg~~~~~-~~~~~~~~~~----------------------------~~~~~l--~~~~~  236 (296)
T PRK11189        195 LD---KE---QW-GWNIVEFYLGKISEE-TLMERLKAGA----------------------------TDNTEL--AERLC  236 (296)
T ss_pred             CC---cc---cc-HHHHHHHHccCCCHH-HHHHHHHhcC----------------------------CCcHHH--HHHHH
Confidence            11   11   11 134444555655443 2332222111                            111111  23344


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Q 004249          373 CLHLKIAECSLALKEREKSIIYFYKALQILE-DNIDARLTLASLLLE  418 (765)
Q Consensus       373 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~  418 (765)
                      ++|+.+|.++...|++++|+.+|+++++.+| +..+.++.+..+...
T Consensus       237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~  283 (296)
T PRK11189        237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL  283 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            5555666666666666666666666666554 444444444444433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.80  E-value=4e-17  Score=158.60  Aligned_cols=203  Identities=18%  Similarity=0.168  Sum_probs=183.9

Q ss_pred             cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249           88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP  167 (765)
Q Consensus        88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  167 (765)
                      .......+..|..++..|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  107 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT  107 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            33456677888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004249          168 WLIEQGDTTWAMSCLSEAVKAD--PNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIES  245 (765)
Q Consensus       168 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  245 (765)
                      ++...|++++|+..+++++...  +.....+..+|.++...|++++|...+.+++...|.++.++..+|.++...|++++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999999853  45677889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          246 SVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       246 A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                      |+..+++++...|.++.  .+..++.++...|+.++|..+.+.+...
T Consensus       188 A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       188 ARAYLERYQQTYNQTAE--SLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            99999999998776554  5668889999999999999988776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.79  E-value=9.2e-18  Score=166.15  Aligned_cols=262  Identities=16%  Similarity=0.096  Sum_probs=210.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004249          163 KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ  242 (765)
Q Consensus       163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  242 (765)
                      +..|..+++.|+..+|.-+|+.++..+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCh
Q 004249          243 IESSVDILEDYLKGHPTEADFGV-----IDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNT  317 (765)
Q Consensus       243 ~~~A~~~~~~~~~~~p~~~~~~~-----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  317 (765)
                      -.+|+.++.+-+...|.......     ......-......+..-.+.|-.+....+  ....+++...||.+|...|+|
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~--~~~DpdvQ~~LGVLy~ls~ef  446 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP--TKIDPDVQSGLGVLYNLSGEF  446 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC--CCCChhHHhhhHHHHhcchHH
Confidence            99999999999887765321000     00000011111223344455555555412  236788889999999999999


Q ss_pred             hHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 004249          318 DKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYK  397 (765)
Q Consensus       318 ~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  397 (765)
                      ++|+.+|+.++... |.+..+|..||-.+....+..+|+..|++++++  .|....+++++|.++..+|.|.+|..+|-.
T Consensus       447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE  523 (579)
T ss_pred             HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence            99999999998877 888999999999999999999999999999999  899999999999999999999999999999


Q ss_pred             HHHHcCCC----------HHHHHHHHHHHHHcCCHHHHHHhc
Q 004249          398 ALQILEDN----------IDARLTLASLLLEDAKDEEAISLL  429 (765)
Q Consensus       398 al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~  429 (765)
                      +|.+.+..          ..+|..|-.++...++.|-+....
T Consensus       524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~  565 (579)
T KOG1125|consen  524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA  565 (579)
T ss_pred             HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence            99886541          246777777777777777655544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.78  E-value=1.4e-15  Score=139.54  Aligned_cols=267  Identities=15%  Similarity=0.094  Sum_probs=221.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH-----HHHHHHHHHH
Q 004249           95 LGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS-----SLWKLIFPWL  169 (765)
Q Consensus        95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~la~~~  169 (765)
                      +-.|..++-..+.++|++.|.++++.+|...++...||..+...|..+.|+..-+..+. .|+..     .+...||.-|
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy  117 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY  117 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence            45677788899999999999999999999999999999999999999999998877665 45433     5677899999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHH
Q 004249          170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN-----IEALKMGAKLYQKSGQIE  244 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~  244 (765)
                      +..|-++.|...|....+...--..++..|..+|....+|++|++.-++..++.|..     +..+..++..+....+.+
T Consensus       118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d  197 (389)
T COG2956         118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD  197 (389)
T ss_pred             HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence            999999999999999887655567889999999999999999999999999988876     456778888888899999


Q ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHH
Q 004249          245 SSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILL  324 (765)
Q Consensus       245 ~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  324 (765)
                      .|+..+.++++.+|.....  -..+|.+....|+|+.|++.++.+++.   +......+...+..||...|+.++....+
T Consensus       198 ~A~~~l~kAlqa~~~cvRA--si~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL  272 (389)
T COG2956         198 RARELLKKALQADKKCVRA--SIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFL  272 (389)
T ss_pred             HHHHHHHHHHhhCccceeh--hhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999999884  449999999999999999999999887   23345566777888888999999988888


Q ss_pred             HhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCC
Q 004249          325 TAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHND  371 (765)
Q Consensus       325 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  371 (765)
                      .++....  ..+.+-..++..-....-.+.|..++.+-+..  .|+-
T Consensus       273 ~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~  315 (389)
T COG2956         273 RRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTM  315 (389)
T ss_pred             HHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcH
Confidence            8887654  22445555666666666677777777777766  6644

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=1.9e-17  Score=156.58  Aligned_cols=295  Identities=18%  Similarity=0.105  Sum_probs=235.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL  169 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  169 (765)
                      .......+|..++...+|.+|+..+..++...|++...|...+.++...|++++|....++.++++|..+..+...+.++
T Consensus        48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~  127 (486)
T KOG0550|consen   48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH  127 (486)
T ss_pred             HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence            45566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHH---------------hc---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004249          170 IEQGDTTWAMSCLSEAV---------------KA---DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK  231 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al---------------~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  231 (765)
                      ...++..+|...++..-               ..   .|....+...-+.++...|++++|...--..+++++.+.++++
T Consensus       128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~  207 (486)
T KOG0550|consen  128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALY  207 (486)
T ss_pred             hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHH
Confidence            99888888776654211               11   1223455667788888999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004249          232 MGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICH  311 (765)
Q Consensus       232 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  311 (765)
                      ..|.+++..++.+.|+..|++++.++|+......      ++.                      .+.....+..-|.-.
T Consensus       208 vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~------~~~----------------------~~k~le~~k~~gN~~  259 (486)
T KOG0550|consen  208 VRGLCLYYNDNADKAINHFQQALRLDPDHQKSKS------ASM----------------------MPKKLEVKKERGNDA  259 (486)
T ss_pred             hcccccccccchHHHHHHHhhhhccChhhhhHHh------Hhh----------------------hHHHHHHHHhhhhhH
Confidence            9999999999999999999999999988654211      111                      011122233345556


Q ss_pred             HhcCChhHHHHHHHhhcccCC---CChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccH
Q 004249          312 IQLGNTDKAEILLTAIHWENV---SDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKER  388 (765)
Q Consensus       312 ~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  388 (765)
                      ++.|++..|.++|..++..++   ..+...|.+.+.+....|+..+|+...+.++.+  ++....++...|.|+..++++
T Consensus       260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~  337 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKW  337 (486)
T ss_pred             hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            677777777777777765552   233567888899999999999999999999999  899999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004249          389 EKSIIYFYKALQILEDNIDARLTLASL  415 (765)
Q Consensus       389 ~~A~~~~~~al~~~p~~~~~~~~l~~~  415 (765)
                      ++|++.|+++++...+ .+.+..+...
T Consensus       338 e~AV~d~~~a~q~~~s-~e~r~~l~~A  363 (486)
T KOG0550|consen  338 EEAVEDYEKAMQLEKD-CEIRRTLREA  363 (486)
T ss_pred             HHHHHHHHHHHhhccc-cchHHHHHHH
Confidence            9999999999988665 4444443333

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=1.5e-14  Score=143.56  Aligned_cols=457  Identities=14%  Similarity=0.024  Sum_probs=295.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 004249          127 SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL  206 (765)
Q Consensus       127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  206 (765)
                      .++.--..+...|+|++|.+...+.+...|++..+......+.++.++|++|+...+.-......+ ...+..+.|.+++
T Consensus        14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHc
Confidence            344444566778999999999999999999999999999999999999999996555433222111 2237899999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 004249          207 GNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHI  286 (765)
Q Consensus       207 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~  286 (765)
                      +..++|+..+.   ..++.+..++...|.+++++|+|++|...|+..++.+.++.+...   .+.+....    .+... 
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~---r~nl~a~~----a~l~~-  161 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEER---RANLLAVA----AALQV-  161 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHH---HHHHHHHH----HhhhH-
Confidence            99999999998   456666778889999999999999999999999988777655221   11111110    01111 


Q ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhc--------ccCCC-Ch-----HHHHHHHHHHHHccccH
Q 004249          287 ELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIH--------WENVS-DH-----AESINEIADLFKNRELY  352 (765)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~-~~-----~~~~~~la~~~~~~g~~  352 (765)
                       +.++..+.....+.+..++.+.+++..|++.+|++.+++++        ..+.. +.     ..+...++.++...|+.
T Consensus       162 -~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt  240 (652)
T KOG2376|consen  162 -QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT  240 (652)
T ss_pred             -HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence             02233233345678899999999999999999999999982        11111 11     23677888999999999


Q ss_pred             HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHh-c--cH-H-HHHHHHHHHHHHcC----------CCHHHHHHHHHHHH
Q 004249          353 STALKYYHMLEANAGVHNDGCLHLKIAECSLAL-K--ER-E-KSIIYFYKALQILE----------DNIDARLTLASLLL  417 (765)
Q Consensus       353 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g--~~-~-~A~~~~~~al~~~p----------~~~~~~~~l~~~~~  417 (765)
                      ++|..+|...+..  .|-+.........-.... +  ++ + .++..++......+          .-.....+.+.+.+
T Consensus       241 ~ea~~iy~~~i~~--~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l  318 (652)
T KOG2376|consen  241 AEASSIYVDIIKR--NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL  318 (652)
T ss_pred             HHHHHHHHHHHHh--cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999987  554432221111111111 0  11 1 12222222211111          11234455666666


Q ss_pred             HcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhH-HH
Q 004249          418 EDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEH-RL  496 (765)
Q Consensus       418 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~-~~  496 (765)
                      ..+..+.+.+.....-...|...           ..+. ...........+..+...+.....         .+|.+ ..
T Consensus       319 ~tnk~~q~r~~~a~lp~~~p~~~-----------~~~l-l~~~t~~~~~~~~ka~e~L~~~~~---------~~p~~s~~  377 (652)
T KOG2376|consen  319 FTNKMDQVRELSASLPGMSPESL-----------FPIL-LQEATKVREKKHKKAIELLLQFAD---------GHPEKSKV  377 (652)
T ss_pred             HhhhHHHHHHHHHhCCccCchHH-----------HHHH-HHHHHHHHHHHHhhhHHHHHHHhc---------cCCchhHH
Confidence            77888888887766655544430           0111 222222333367788877777664         45555 77


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCC---CchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHH
Q 004249          497 LIIDLCKTLASLHRYEDAIKIINLILKLGYGKF---PVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNR  573 (765)
Q Consensus       497 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  573 (765)
                      +.+.++...+..|+++.|++++...+..-..+.   ...|...-.+.. .+++.++.+-|.+.+..++.....+...-. 
T Consensus       378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~-l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~-  455 (652)
T KOG2376|consen  378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVA-LYYKIKDNDSASAVLDSAIKWWRKQQTGSI-  455 (652)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHH-HHHhccCCccHHHHHHHHHHHHHHhcccch-
Confidence            888889999999999999999984442111111   122444444445 788888888899999888875432211100 


Q ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 004249          574 YYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALI  648 (765)
Q Consensus       574 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  648 (765)
                                    +.             ...+...+..-...|+-++|...++..++.+|++..+.-++-.+|.
T Consensus       456 --------------~l-------------~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~  503 (652)
T KOG2376|consen  456 --------------AL-------------LSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYA  503 (652)
T ss_pred             --------------HH-------------HhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence                          00             0112223445556689999999999999999999766655555543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.77  E-value=1.7e-16  Score=154.06  Aligned_cols=197  Identities=14%  Similarity=0.103  Sum_probs=150.7

Q ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249          125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV  204 (765)
Q Consensus       125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  204 (765)
                      +..+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            46777888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHH
Q 004249          205 ELGNFQRAADVYRQMVQLC--PENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRV  282 (765)
Q Consensus       205 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A  282 (765)
                      ..|++++|+..+++++...  |.....+..+|.++...|++++|...+.+++...|.+..  .+..++.++...|++++|
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPE--SLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChH--HHHHHHHHHHHcCCHHHH
Confidence            8888888888888887643  344566777788888888888888888888887777654  566778888888888888


Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhh
Q 004249          283 LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAI  327 (765)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  327 (765)
                      ...+++++..    .+.....+..++.++...|+.++|..+.+.+
T Consensus       189 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       189 RAYLERYQQT----YNQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHHHh----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            8888877776    3444555556666667777777776665554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PLN02789 farnesyltranstransferase

Probab=99.75  E-value=1.3e-15  Score=149.78  Aligned_cols=207  Identities=14%  Similarity=0.085  Sum_probs=184.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH--HH
Q 004249          101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALG-NTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDT--TW  177 (765)
Q Consensus       101 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~--~~  177 (765)
                      +...+++++|+..+.+++..+|.+..+|...+.++..+| ++++++.++.+++..+|++..+|...+.++...|+.  ++
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~  126 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK  126 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence            556789999999999999999999999999999999999 689999999999999999999999999999888874  78


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCH----HHHHHHH
Q 004249          178 AMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS---GQI----ESSVDIL  250 (765)
Q Consensus       178 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~~A~~~~  250 (765)
                      ++.+++++++.+|++..+|..++.++...|++++++..+.++++.+|.+..+|...+.+....   |.+    ++++.+.
T Consensus       127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~  206 (320)
T PLN02789        127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT  206 (320)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999998776   333    5788889


Q ss_pred             HHHHhcCCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh
Q 004249          251 EDYLKGHPTEADFGVIDLLASMLVQ----MNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQ  313 (765)
Q Consensus       251 ~~~~~~~p~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  313 (765)
                      .+++..+|++..  +|+.++.++..    .++..+|+..+.+++..    .+....+...++.++..
T Consensus       207 ~~aI~~~P~N~S--aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~----~~~s~~al~~l~d~~~~  267 (320)
T PLN02789        207 IDAILANPRNES--PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK----DSNHVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHhCCCCcC--HHHHHHHHHhcCCcccccchhHHHHHHHhhcc----cCCcHHHHHHHHHHHHh
Confidence            999999999988  78899999887    45567788888887765    56677777777777764

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.75  E-value=2.4e-15  Score=138.01  Aligned_cols=267  Identities=15%  Similarity=0.121  Sum_probs=146.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHH
Q 004249          130 ILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND-----FKLKFHLASLYV  204 (765)
Q Consensus       130 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~  204 (765)
                      ..|.-+.-..+.++|+..|..+++.+|...++...||.++.+.|..+.|+.+-+..+. .|+.     ..+...||.-|.
T Consensus        40 v~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym  118 (389)
T COG2956          40 VKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYM  118 (389)
T ss_pred             HhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHH
Confidence            3455555566667777777777777776667777777777777777777766655544 2332     245566666677


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHhccHHH
Q 004249          205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADF---GVIDLLASMLVQMNAYDR  281 (765)
Q Consensus       205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~~~l~~~~~~~~~~~~  281 (765)
                      ..|-++.|...|........--..++..|..+|....+|++|++.-++..+..+.....   ..+..++..+....+.+.
T Consensus       119 ~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~  198 (389)
T COG2956         119 AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR  198 (389)
T ss_pred             HhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence            77777777777766665444445566666677777777777777776666666655431   122334444444455555


Q ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHH
Q 004249          282 VLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHM  361 (765)
Q Consensus       282 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  361 (765)
                      |+..+.++++.    ++....+-..+|.+....|+++.|++.++.+++.++.--+.+...+..+|.+.|+.++.+..+.+
T Consensus       199 A~~~l~kAlqa----~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~  274 (389)
T COG2956         199 ARELLKKALQA----DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR  274 (389)
T ss_pred             HHHHHHHHHhh----CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            55555555555    44444444455555555555555555555554444222333444444455555555555555544


Q ss_pred             HHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC
Q 004249          362 LEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED  404 (765)
Q Consensus       362 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  404 (765)
                      +.+.  .+ .+.+...++..-....-.+.|..++.+-+...|.
T Consensus       275 ~~~~--~~-g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt  314 (389)
T COG2956         275 AMET--NT-GADAELMLADLIELQEGIDAAQAYLTRQLRRKPT  314 (389)
T ss_pred             HHHc--cC-CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence            4443  22 2233333344444444444444444444444443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=1.1e-14  Score=134.91  Aligned_cols=423  Identities=13%  Similarity=0.047  Sum_probs=241.4

Q ss_pred             HHcCCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 004249          136 DALGNTAKAMGCYWLAACYKQKDS-SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAAD  214 (765)
Q Consensus       136 ~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  214 (765)
                      ....+|..|+..++-....+.... .....+|.|++.+|+|++|+..|+-+...+..+.+.+.+++-+++-+|.|.+|..
T Consensus        33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~  112 (557)
T KOG3785|consen   33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS  112 (557)
T ss_pred             HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence            345789999999988877664433 5566689999999999999999999988777778899999999999999999987


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Q 004249          215 VYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYY  294 (765)
Q Consensus       215 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  294 (765)
                      .-.++    |+++-....+-.+-.+.|+-++-...-+. +.-..+     --..++.+.+..-.|++|+++|++++..  
T Consensus       113 ~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~-LqD~~E-----dqLSLAsvhYmR~HYQeAIdvYkrvL~d--  180 (557)
T KOG3785|consen  113 IAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSS-LQDTLE-----DQLSLASVHYMRMHYQEAIDVYKRVLQD--  180 (557)
T ss_pred             HHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHH-HhhhHH-----HHHhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            76554    66665555555666667765554443332 221111     1236777777777888888888888876  


Q ss_pred             CCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCC----
Q 004249          295 SGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHN----  370 (765)
Q Consensus       295 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----  370 (765)
                        ++........++.||.++.-++-+.+.+.-.+... |+.+-+....+...++.=+-..|..-...+.... +..    
T Consensus       181 --n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~-~~~~~f~  256 (557)
T KOG3785|consen  181 --NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNI-DQEYPFI  256 (557)
T ss_pred             --ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcc-cccchhH
Confidence              66666677788888888888888888887777666 6666665555544443322222222222222111 111    


Q ss_pred             ---------------------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHH
Q 004249          371 ---------------------------DGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDE  423 (765)
Q Consensus       371 ---------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  423 (765)
                                                 -|++..++...|..+++.++|....+.   ++|..+.-+...|.+....|+--
T Consensus       257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~  333 (557)
T KOG3785|consen  257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQET  333 (557)
T ss_pred             HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhc
Confidence                                       234444444444444554444443332   34444444444444444444321


Q ss_pred             H-------HHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHH
Q 004249          424 E-------AISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRL  496 (765)
Q Consensus       424 ~-------A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~  496 (765)
                      .       |.+.|+-+-+.....       .   .+.-.-.+|.+++-..++++.+..+ ..++.        -..++..
T Consensus       334 gSreHlKiAqqffqlVG~Sa~ec-------D---TIpGRQsmAs~fFL~~qFddVl~Yl-nSi~s--------YF~NdD~  394 (557)
T KOG3785|consen  334 GSREHLKIAQQFFQLVGESALEC-------D---TIPGRQSMASYFFLSFQFDDVLTYL-NSIES--------YFTNDDD  394 (557)
T ss_pred             CcHHHHHHHHHHHHHhccccccc-------c---cccchHHHHHHHHHHHHHHHHHHHH-HHHHH--------HhcCcch
Confidence            1       222222111111100       0   0122233444444444444444222 22211        1112333


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHH
Q 004249          497 LIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYK  576 (765)
Q Consensus       497 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~  576 (765)
                      ..++++.+....|++.+|.++|-+.-...    -.+....-.+++.||.+.+.++.|.+.+-+.  ..|           
T Consensus       395 Fn~N~AQAk~atgny~eaEelf~~is~~~----ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~-----------  457 (557)
T KOG3785|consen  395 FNLNLAQAKLATGNYVEAEELFIRISGPE----IKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTP-----------  457 (557)
T ss_pred             hhhHHHHHHHHhcChHHHHHHHhhhcChh----hhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCc-----------
Confidence            44556666666666666666654332111    1123333344445666666666555554221  001           


Q ss_pred             HHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCC
Q 004249          577 LVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPEN  636 (765)
Q Consensus       577 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~  636 (765)
                                             .+....+-+.++.++..++|--|...|...-.++|+.
T Consensus       458 -----------------------~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p  494 (557)
T KOG3785|consen  458 -----------------------SERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP  494 (557)
T ss_pred             -----------------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence                                   1112223456788888888989999999888888864

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.74  E-value=2.9e-12  Score=128.40  Aligned_cols=523  Identities=11%  Similarity=0.088  Sum_probs=334.0

Q ss_pred             HHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249          107 YEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK--DSSLWKLIFPWLIEQGDTTWAMSCLSE  184 (765)
Q Consensus       107 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~  184 (765)
                      |..--.+|++++..-.+.|.+|.........+|+...-...|.+++..-|-  +...|-..-......|-.+-++..|++
T Consensus        84 ~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrR  163 (835)
T KOG2047|consen   84 YESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRR  163 (835)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHH
Confidence            334445566666666677788888888888888888888888888876653  345666666666677777888888888


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHH
Q 004249          185 AVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLC-------PENIEALKMGAKLYQKSGQIE---SSVDILEDYL  254 (765)
Q Consensus       185 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~---~A~~~~~~~~  254 (765)
                      -++..|...   -.....+...+++++|.+.+...+..+       +.+-..|..+..+..+.-+.-   ..-..++..+
T Consensus       164 YLk~~P~~~---eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi  240 (835)
T KOG2047|consen  164 YLKVAPEAR---EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI  240 (835)
T ss_pred             HHhcCHHHH---HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence            888877653   344556677888888888887776432       334455555555555433222   2233455666


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCC--ccHHHHHH--HHHHHHhcC-------------Ch
Q 004249          255 KGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKE--LLLALKIK--AGICHIQLG-------------NT  317 (765)
Q Consensus       255 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~--l~~~~~~~~-------------~~  317 (765)
                      ...++.... .|..||..|.+.|.++.|...|++++...-.-..  .-.+.+..  -..+...++             +.
T Consensus       241 ~rftDq~g~-Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl  319 (835)
T KOG2047|consen  241 RRFTDQLGF-LWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDL  319 (835)
T ss_pred             ccCcHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhH
Confidence            666665443 6778888888888888888888887765211000  00011100  000111111             12


Q ss_pred             hHHHHHHHhhc------------ccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCC-----CHHHHHHHHH
Q 004249          318 DKAEILLTAIH------------WENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHN-----DGCLHLKIAE  380 (765)
Q Consensus       318 ~~A~~~~~~~~------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~la~  380 (765)
                      +-....|+.++            .++ |++..-|....  -+..|+..+-+..|..++..- +|.     -...|..+|.
T Consensus       320 ~~~~a~~e~lm~rr~~~lNsVlLRQn-~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~fak  395 (835)
T KOG2047|consen  320 ELHMARFESLMNRRPLLLNSVLLRQN-PHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAK  395 (835)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHhcC-CccHHHHHhhh--hhhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHH
Confidence            22223333322            233 55566665544  445788899999999888653 443     2368999999


Q ss_pred             HHHHhccHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHhcCCCCCcccccc-----Cc-ccchhhhh
Q 004249          381 CSLALKEREKSIIYFYKALQILEDN----IDARLTLASLLLEDAKDEEAISLLTPPMSLENKYV-----NS-DKTHAWWL  450 (765)
Q Consensus       381 ~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~-~~~~~~~~  450 (765)
                      .|...|+.+.|...|+++.+..-..    ..+|..-|..-.+..+++.|+++++.+........     +. ......+.
T Consensus       396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr  475 (835)
T KOG2047|consen  396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR  475 (835)
T ss_pred             HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence            9999999999999999999875322    46788889999999999999999998876543321     01 11223455


Q ss_pred             hhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCC
Q 004249          451 NIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFP  530 (765)
Q Consensus       451 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~  530 (765)
                      ..++|..++.+....|-++.-...|.+++.         ..--.|.+..+.|..+....-++++.+.|++.+.+.+-   
T Consensus       476 SlkiWs~y~DleEs~gtfestk~vYdriid---------LriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~---  543 (835)
T KOG2047|consen  476 SLKIWSMYADLEESLGTFESTKAVYDRIID---------LRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW---  543 (835)
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHH---------HhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC---
Confidence            678899999999999999999989988885         33456778899999999999999999999999998853   


Q ss_pred             chHHHH---HHHHhhcccccCChhhHHHHHHHHHHhCCCc-h-hhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCc
Q 004249          531 VEKEEL---YFLGAQIPCNTTDPKLWFDGVRFMVKLHPHR-L-TTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPP  605 (765)
Q Consensus       531 ~~~~~~---~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~-~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  605 (765)
                      +....+   |......-+..-..+.|...|+++++..|.. . ..+..|+.+-...|-. ..+...+.++-...+..  -
T Consensus       544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLa-r~amsiyerat~~v~~a--~  620 (835)
T KOG2047|consen  544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLA-RHAMSIYERATSAVKEA--Q  620 (835)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHhcCCHH--H
Confidence            333333   2222223345677899999999999988822 1 1222233333332222 23444444433322111  0


Q ss_pred             hhhhhhhhhhhh----hHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHh
Q 004249          606 IIISGHQFTMIS----HHQDAAREYLEAYKLLPENPLINLCVGTALINLAL  652 (765)
Q Consensus       606 ~~~~g~~~~~~~----~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  652 (765)
                      .+-+-++|...-    -...-...|++|++.-|++....+++-.+-+...+
T Consensus       621 ~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtkl  671 (835)
T KOG2047|consen  621 RLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKL  671 (835)
T ss_pred             HHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhh
Confidence            122222222210    01233567889999999988877777666665544

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.74  E-value=5.3e-14  Score=146.29  Aligned_cols=140  Identities=11%  Similarity=-0.035  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004249          336 AESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASL  415 (765)
Q Consensus       336 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  415 (765)
                      ..+++.++..|...|++++|+.++++++..  .|..++.++..|.++...|++.+|...++.+..+++.+--+....+..
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy  271 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY  271 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence            346688899999999999999999999999  999999999999999999999999999999999999999888889999


Q ss_pred             HHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHh
Q 004249          416 LLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVC  480 (765)
Q Consensus       416 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  480 (765)
                      +.+.|+.++|.+.+......+.+.   .......+-.......|..|.+.|++..|+..|..+.+
T Consensus       272 ~LRa~~~e~A~~~~~~Ftr~~~~~---~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  272 LLRAGRIEEAEKTASLFTREDVDP---LSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHHCCCHHHHHHHHHhhcCCCCCc---ccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999999999999987765544211   00111111122234678999999999999999887775

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.73  E-value=5.1e-15  Score=153.31  Aligned_cols=197  Identities=17%  Similarity=0.124  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249           93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL  169 (765)
Q Consensus        93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  169 (765)
                      .+...|..+...|+.+.|...+.++.+..|.+.   +.....+.++...|++++|...+++++..+|++..++.. +..+
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~   86 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGA   86 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHH
Confidence            334444455555555555555555555444332   334444555555555555555555555555555544432 3233


Q ss_pred             HHcCC----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004249          170 IEQGD----TTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIES  245 (765)
Q Consensus       170 ~~~g~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  245 (765)
                      ...|+    ...+...+.......|....++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++
T Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~e  166 (355)
T cd05804          87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKE  166 (355)
T ss_pred             HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence            22222    22222222222223344444444555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHhcCCCCCCH--HHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004249          246 SVDILEDYLKGHPTEADF--GVIDLLASMLVQMNAYDRVLKHIELVD  290 (765)
Q Consensus       246 A~~~~~~~~~~~p~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~  290 (765)
                      |+.++++++...|.++..  ..+..++.++...|++++|+..+++++
T Consensus       167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~  213 (355)
T cd05804         167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI  213 (355)
T ss_pred             HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            555555555554432221  123345555555555555555555543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.72  E-value=1.6e-12  Score=130.33  Aligned_cols=506  Identities=12%  Similarity=0.061  Sum_probs=361.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH
Q 004249           98 ASLHYALGRYEEAISVLHEVIRLEE--ELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDT  175 (765)
Q Consensus        98 a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~  175 (765)
                      ...++.+|+...-...|.+++..-|  .+..+|-..-......|-++-++..|++.++..|...+-   ....+...+++
T Consensus       109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~ee---yie~L~~~d~~  185 (835)
T KOG2047|consen  109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREE---YIEYLAKSDRL  185 (835)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHH---HHHHHHhccch
Confidence            4557788999999999999999887  345677777777788899999999999999999877543   34567789999


Q ss_pred             HHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHH
Q 004249          176 TWAMSCLSEAVKA-------DPNDFKLKFHLASLYVELGNFQ---RAADVYRQMVQLCPEN-IEALKMGAKLYQKSGQIE  244 (765)
Q Consensus       176 ~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~  244 (765)
                      ++|.+.+...+..       .+.+...|..+..+..+.-+.-   ....+++..+...++. ...|..||..|.+.|.++
T Consensus       186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~e  265 (835)
T KOG2047|consen  186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFE  265 (835)
T ss_pred             HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhH
Confidence            9999999988764       3455667777777766554332   2335667777777766 457889999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCHH-HHHHHHH-----HHHHhc-------------cHHHHHHHHHHHHHHhc--------CCC
Q 004249          245 SSVDILEDYLKGHPTEADFG-VIDLLAS-----MLVQMN-------------AYDRVLKHIELVDLVYY--------SGK  297 (765)
Q Consensus       245 ~A~~~~~~~~~~~p~~~~~~-~~~~l~~-----~~~~~~-------------~~~~A~~~~~~~~~~~~--------~~~  297 (765)
                      +|...|++++..--.-.++. ++...+.     +...++             +.+-....|+..+...+        ..+
T Consensus       266 karDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn  345 (835)
T KOG2047|consen  266 KARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN  345 (835)
T ss_pred             HHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence            99999999987644332211 1111111     111111             12223334444443311        123


Q ss_pred             CccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCC-----hHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCC--
Q 004249          298 ELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSD-----HAESINEIADLFKNRELYSTALKYYHMLEANAGVHN--  370 (765)
Q Consensus       298 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--  370 (765)
                      +.+..-|...  +-+..|+..+-+..|..++..-.|.     -...|..+|..|...|+.+.|..+|+++.... .+.  
T Consensus       346 ~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~-y~~v~  422 (835)
T KOG2047|consen  346 PHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP-YKTVE  422 (835)
T ss_pred             CccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC-ccchH
Confidence            4444444443  3456788888888888887543232     24689999999999999999999999999873 232  


Q ss_pred             -CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCC-------------------HHHHHHHHHHHHHcCCHHHHHHhcC
Q 004249          371 -DGCLHLKIAECSLALKEREKSIIYFYKALQILEDN-------------------IDARLTLASLLLEDAKDEEAISLLT  430 (765)
Q Consensus       371 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~l~~~~~~~g~~~~A~~~~~  430 (765)
                       -..+|...|..-.+..+++.|...++++... |..                   ..+|...+.+....|-++.-...|+
T Consensus       423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd  501 (835)
T KOG2047|consen  423 DLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD  501 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence             2578999999999999999999999999865 332                   2466777888888899999999999


Q ss_pred             CCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHh---
Q 004249          431 PPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLAS---  507 (765)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~---  507 (765)
                      +++++-.-.            +++....|..+....-++++.+.|.+-+.       +|.-|.-.++++..-..+.+   
T Consensus       502 riidLriaT------------Pqii~NyAmfLEeh~yfeesFk~YErgI~-------LFk~p~v~diW~tYLtkfi~ryg  562 (835)
T KOG2047|consen  502 RIIDLRIAT------------PQIIINYAMFLEEHKYFEESFKAYERGIS-------LFKWPNVYDIWNTYLTKFIKRYG  562 (835)
T ss_pred             HHHHHhcCC------------HHHHHHHHHHHHhhHHHHHHHHHHHcCCc-------cCCCccHHHHHHHHHHHHHHHhc
Confidence            998876555            68888999999999999999999988763       55778888887766555543   


Q ss_pred             hhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCch--hhhHHHHHHHhh-hhhh
Q 004249          508 LHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRL--TTWNRYYKLVSR-FEKI  584 (765)
Q Consensus       508 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~~~~~~~~-~~~~  584 (765)
                      ..+.+.|..+|++++..+|   |.....+|.+.+..-..-|--..|++.|+++-..-+...  ..|+.+..-... .|- 
T Consensus       563 g~klEraRdLFEqaL~~Cp---p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv-  638 (835)
T KOG2047|consen  563 GTKLERARDLFEQALDGCP---PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGV-  638 (835)
T ss_pred             CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCC-
Confidence            3578999999999999885   556667777777666778999999999999887554331  233333221111 111 


Q ss_pred             hhHHHHHHHHHHHhcCCCCCch--hhhhhhhhhhhhHHHHHHHHHHHHhhCC
Q 004249          585 FSKHAKLLRNVRAKYRDFVPPI--IISGHQFTMISHHQDAAREYLEAYKLLP  634 (765)
Q Consensus       585 ~~~a~~~~~~~~~~~p~~~~~~--~~~g~~~~~~~~~~~A~~~~~~a~~~~p  634 (765)
                       ......+.+.++.-|++..--  +..+..-...|..+.|...|.-+-++.|
T Consensus       639 -~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~d  689 (835)
T KOG2047|consen  639 -PRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICD  689 (835)
T ss_pred             -cccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCC
Confidence             244566777777777765443  3445555668999999999987766654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.72  E-value=2.3e-14  Score=148.40  Aligned_cols=314  Identities=14%  Similarity=0.027  Sum_probs=234.5

Q ss_pred             hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 004249          121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKF  197 (765)
Q Consensus       121 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  197 (765)
                      +|+++.++..+|.++...|+++.+...+.++....|.+   .+.....+.++...|++++|...+++++..+|.+..++.
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~   81 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK   81 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            79999999999999999999999999999888777644   456777889999999999999999999999999987776


Q ss_pred             HHHHHHHHhCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 004249          198 HLASLYVELGNF----QRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASML  273 (765)
Q Consensus       198 ~la~~~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~  273 (765)
                      . +..+...|++    ..+...+.......|.....+..+|.++...|++++|+..++++++..|++..  ++..+|.++
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~--~~~~la~i~  158 (355)
T cd05804          82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW--AVHAVAHVL  158 (355)
T ss_pred             H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH--HHHHHHHHH
Confidence            5 5555555444    44444444433566777778888999999999999999999999999999876  678999999


Q ss_pred             HHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCC-CChHHHHH---HHHHHHHcc
Q 004249          274 VQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENV-SDHAESIN---EIADLFKNR  349 (765)
Q Consensus       274 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~---~la~~~~~~  349 (765)
                      ...|++++|+.++++++...+.........+..++.++...|++++|+..+++++...+ ........   .+...+...
T Consensus       159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  238 (355)
T cd05804         159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA  238 (355)
T ss_pred             HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence            99999999999999999885543344456788999999999999999999999864442 12222111   222333344


Q ss_pred             ccHHHHHHH--H-HHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC---------CHHHHHHHHHHHH
Q 004249          350 ELYSTALKY--Y-HMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED---------NIDARLTLASLLL  417 (765)
Q Consensus       350 g~~~~A~~~--~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~  417 (765)
                      |....+..+  + .........+.........+.++...|+.++|...++.+......         ........+.++.
T Consensus       239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~  318 (355)
T cd05804         239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF  318 (355)
T ss_pred             CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence            433322222  1 111111001223334456888899999999999999887664322         2456677888999


Q ss_pred             HcCCHHHHHHhcCCCCCccc
Q 004249          418 EDAKDEEAISLLTPPMSLEN  437 (765)
Q Consensus       418 ~~g~~~~A~~~~~~~~~~~~  437 (765)
                      ..|++++|...+..++....
T Consensus       319 ~~g~~~~A~~~L~~al~~a~  338 (355)
T cd05804         319 AEGNYATALELLGPVRDDLA  338 (355)
T ss_pred             HcCCHHHHHHHHHHHHHHHH
Confidence            99999999999998887653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=6.7e-16  Score=146.29  Aligned_cols=286  Identities=19%  Similarity=0.097  Sum_probs=214.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 004249          128 YHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG  207 (765)
Q Consensus       128 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  207 (765)
                      ....|..++...+|..|+..+..++...|++...|...+.+++..|++++|....++.++++|..+..+...+.++...+
T Consensus        52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~  131 (486)
T KOG0550|consen   52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS  131 (486)
T ss_pred             HHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence            34556778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHhccHHHHHHHH
Q 004249          208 NFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-FGVIDLLASMLVQMNAYDRVLKHI  286 (765)
Q Consensus       208 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~  286 (765)
                      +..+|...++..        .++           ....|+..+++.+..+...+. ..+-..-+.++...|++++|...-
T Consensus       132 ~~i~A~~~~~~~--------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea  192 (486)
T KOG0550|consen  132 DLIEAEEKLKSK--------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA  192 (486)
T ss_pred             HHHHHHHHhhhh--------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence            888888777611        100           112222223332222211111 112224455555556666666655


Q ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCC-----------CChHHHHHHHHHHHHccccHHHH
Q 004249          287 ELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENV-----------SDHAESINEIADLFKNRELYSTA  355 (765)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A  355 (765)
                      -..+++    ++.+.++++..|.++...++.+.|+.+|++.+..++           +.....+..-|.-.++.|++..|
T Consensus       193 ~~ilkl----d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A  268 (486)
T KOG0550|consen  193 IDILKL----DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA  268 (486)
T ss_pred             HHHHhc----ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence            555555    555555555556666666666666666666554431           22234566677888899999999


Q ss_pred             HHHHHHHHhccCCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCC
Q 004249          356 LKYYHMLEANAGVHND----GCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTP  431 (765)
Q Consensus       356 ~~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  431 (765)
                      .++|..++.+  +|++    +..|.+++.+..++|+..+|+.....++.++|....++...|.++...+++++|.+.+++
T Consensus       269 ~E~Yteal~i--dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~  346 (486)
T KOG0550|consen  269 YECYTEALNI--DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK  346 (486)
T ss_pred             HHHHHHhhcC--CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999  7765    457888999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccc
Q 004249          432 PMSLENK  438 (765)
Q Consensus       432 ~~~~~~~  438 (765)
                      +++...+
T Consensus       347 a~q~~~s  353 (486)
T KOG0550|consen  347 AMQLEKD  353 (486)
T ss_pred             HHhhccc
Confidence            9886655

>PLN02789 farnesyltranstransferase

Probab=99.72  E-value=3.8e-15  Score=146.37  Aligned_cols=220  Identities=13%  Similarity=0.118  Sum_probs=176.0

Q ss_pred             cCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-CHHHHHHHH
Q 004249          104 LGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG-DTTWAMSCL  182 (765)
Q Consensus       104 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~  182 (765)
                      .++|.+|..+|+.++.                 ..++.++|+..+.+++.++|.+..+|...+.++..+| ++++++..+
T Consensus        33 ~~~~~~a~~~~ra~l~-----------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~   95 (320)
T PLN02789         33 TPEFREAMDYFRAVYA-----------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFA   95 (320)
T ss_pred             CHHHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHH
Confidence            3566777777766554                 4578889999999999999999999999999999998 689999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249          183 SEAVKADPNDFKLKFHLASLYVELGNF--QRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTE  260 (765)
Q Consensus       183 ~~al~~~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  260 (765)
                      ++++..+|++..+|...+.++...|..  ++++.++.++++.+|++..+|...+.++...|++++++..+.++++.+|.+
T Consensus        96 ~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N  175 (320)
T PLN02789         96 EDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN  175 (320)
T ss_pred             HHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence            999999999999999999999988874  788999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHh---ccH----HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh----cCChhHHHHHHHhhcc
Q 004249          261 ADFGVIDLLASMLVQM---NAY----DRVLKHIELVDLVYYSGKELLLALKIKAGICHIQ----LGNTDKAEILLTAIHW  329 (765)
Q Consensus       261 ~~~~~~~~l~~~~~~~---~~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~  329 (765)
                      ..  +|+..+.++...   |.+    ++++.+..+++..    .|.+..+|..++.++..    .+...+|...+.+++.
T Consensus       176 ~s--AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~----~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~  249 (320)
T PLN02789        176 NS--AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA----NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS  249 (320)
T ss_pred             hh--HHHHHHHHHHhccccccccccHHHHHHHHHHHHHh----CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence            88  788888887665   222    4566777777777    56666666666666655    2334455555555544


Q ss_pred             cCCCChHHHHHHHHHHHH
Q 004249          330 ENVSDHAESINEIADLFK  347 (765)
Q Consensus       330 ~~~~~~~~~~~~la~~~~  347 (765)
                      .. +.++.++..++.++.
T Consensus       250 ~~-~~s~~al~~l~d~~~  266 (320)
T PLN02789        250 KD-SNHVFALSDLLDLLC  266 (320)
T ss_pred             cc-CCcHHHHHHHHHHHH
Confidence            33 444555555555554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.70  E-value=3.1e-15  Score=153.13  Aligned_cols=246  Identities=16%  Similarity=0.100  Sum_probs=166.9

Q ss_pred             hhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Q 004249          120 LEEELPNSYHILGLVHDALGNTAKAMGCYWLAACY--------KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA---  188 (765)
Q Consensus       120 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---  188 (765)
                      ..|.-..+...++..|...|++++|+..++++++.        .|.-......+|.+|..++++.+|+..|++++.+   
T Consensus       194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~  273 (508)
T KOG1840|consen  194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE  273 (508)
T ss_pred             CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            45555566666777777777777777777777765        3433444455777777777777777777777765   


Q ss_pred             -----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004249          189 -----DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCP--------ENIEALKMGAKLYQKSGQIESSVDILEDYLK  255 (765)
Q Consensus       189 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  255 (765)
                           +|.-..++.+||.+|...|++++|..++++++++..        .-...+..++.++...+++++|..+++++++
T Consensus       274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~  353 (508)
T KOG1840|consen  274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK  353 (508)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence                 233345677777777777777777777777766532        2244566777777777888888887777766


Q ss_pred             cC-----CCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc----CCCCccHHHHHHHHHHHHhcCChhHHHHHHH
Q 004249          256 GH-----PTE-ADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYY----SGKELLLALKIKAGICHIQLGNTDKAEILLT  325 (765)
Q Consensus       256 ~~-----p~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  325 (765)
                      +.     +++ .....+.++|.+|..+|++++|.+++++++.+..    ............+|..+.+.+.+.+|...|.
T Consensus       354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~  433 (508)
T KOG1840|consen  354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE  433 (508)
T ss_pred             HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence            42     222 1133566788888888888888888888777642    2233345566777777777777777777666


Q ss_pred             hhc------ccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhc
Q 004249          326 AIH------WENVSDHAESINEIADLFKNRELYSTALKYYHMLEAN  365 (765)
Q Consensus       326 ~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  365 (765)
                      ++.      ..+.|+....+.+|+.+|..+|++++|+++.+.++..
T Consensus       434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            643      1223455567888888888888888888888887743

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.70  E-value=3.4e-15  Score=152.85  Aligned_cols=251  Identities=17%  Similarity=0.154  Sum_probs=208.5

Q ss_pred             HhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004249          151 AACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA--------DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL  222 (765)
Q Consensus       151 a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  222 (765)
                      .-...|.-..+...++..|...|+++.|+..++.++..        .|.-......+|.+|..++++.+|+..|++++.+
T Consensus       191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i  270 (508)
T KOG1840|consen  191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI  270 (508)
T ss_pred             cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34568988888888999999999999999999999988        4444455566999999999999999999999875


Q ss_pred             C--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CCC-HHHHHHHHHHHHHhccHHHHHHHHHH
Q 004249          223 C--------PENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPT-----EAD-FGVIDLLASMLVQMNAYDRVLKHIEL  288 (765)
Q Consensus       223 ~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~  288 (765)
                      .        |.-..++.+||.+|...|++++|..++++++++...     .+. ...+..++.++...+++++|+.++++
T Consensus       271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~  350 (508)
T KOG1840|consen  271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK  350 (508)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            3        333567999999999999999999999999876422     121 33577899999999999999999999


Q ss_pred             HHHHhc----CCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC-------CCChHHHHHHHHHHHHccccHHHHHH
Q 004249          289 VDLVYY----SGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN-------VSDHAESINEIADLFKNRELYSTALK  357 (765)
Q Consensus       289 ~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~  357 (765)
                      +++++.    ..++.....+.++|.++..+|++++|.+++++++...       .+.....+..+|..+.+.+++.+|..
T Consensus       351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~  430 (508)
T KOG1840|consen  351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ  430 (508)
T ss_pred             HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence            988754    3344567889999999999999999999999987432       23335678889999999999999999


Q ss_pred             HHHHHHhcc-----CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          358 YYHMLEANA-----GVHNDGCLHLKIAECSLALKEREKSIIYFYKALQI  401 (765)
Q Consensus       358 ~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  401 (765)
                      .|.++..+.     ..|+....+.+|+.+|..+|+++.|+++.++++..
T Consensus       431 l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  431 LFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            998876551     24556678999999999999999999999999854

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.69  E-value=7.4e-13  Score=137.83  Aligned_cols=313  Identities=16%  Similarity=0.131  Sum_probs=192.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004249          159 SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQ  238 (765)
Q Consensus       159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  238 (765)
                      .+.......++...|++++|+..+++....-.+...+.-..|.++..+|++++|...|+..+..+|++...+..+..+..
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g   83 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG   83 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence            34455556666666666666666666555555556666666666666666666666666666666666666555555542


Q ss_pred             HcC-----CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh
Q 004249          239 KSG-----QIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQ  313 (765)
Q Consensus       239 ~~g-----~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  313 (765)
                      ...     ..+.-..+|++.....|....+   ..+...+..-..+.....                             
T Consensus        84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~---~rl~L~~~~g~~F~~~~~-----------------------------  131 (517)
T PF12569_consen   84 LQLQLSDEDVEKLLELYDELAEKYPRSDAP---RRLPLDFLEGDEFKERLD-----------------------------  131 (517)
T ss_pred             hhcccccccHHHHHHHHHHHHHhCccccch---hHhhcccCCHHHHHHHHH-----------------------------
Confidence            221     3444455555555555554331   122222222222222111                             


Q ss_pred             cCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhc----c---------CCCCCH--HHHHHH
Q 004249          314 LGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEAN----A---------GVHNDG--CLHLKI  378 (765)
Q Consensus       314 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~---------~~~~~~--~~~~~l  378 (765)
                              .++...+...   -|.++..+-.+|....+..-...++......    +         ..|...  .+++.+
T Consensus       132 --------~yl~~~l~Kg---vPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~l  200 (517)
T PF12569_consen  132 --------EYLRPQLRKG---VPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFL  200 (517)
T ss_pred             --------HHHHHHHhcC---CchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHH
Confidence                    1222222211   1223333333333222222222222222111    0         012222  355888


Q ss_pred             HHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHH
Q 004249          379 AECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKL  458 (765)
Q Consensus       379 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (765)
                      |..|...|++++|+++.+++++..|..++.++..|.++...|++.+|...++.+...++..            -.+....
T Consensus       201 Aqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D------------RyiNsK~  268 (517)
T PF12569_consen  201 AQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD------------RYINSKC  268 (517)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh------------HHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999988876            4566678


Q ss_pred             HHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhcc
Q 004249          459 CRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGY  526 (765)
Q Consensus       459 a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  526 (765)
                      +..+.+.|++++|.+.+....+...+-..-+.+-...-.....|.+|.+.|++..|++.|..+.+...
T Consensus       269 aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~  336 (517)
T PF12569_consen  269 AKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD  336 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            88999999999999888776543211000111112233456788999999999999999999888763

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.66  E-value=4.8e-13  Score=121.41  Aligned_cols=427  Identities=15%  Similarity=0.006  Sum_probs=286.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004249          100 LHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAM  179 (765)
Q Consensus       100 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~  179 (765)
                      .+++..+|..|++++..-.+..|.+...+..+|.||+...+|..|-.+|++.-...|......+..+..+++.+.+.+|+
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            35889999999999999999999999999999999999999999999999999999999998899999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249          180 SCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPT  259 (765)
Q Consensus       180 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  259 (765)
                      .+...+.....-...+....+.+.+..+++..+....++.-  ..+......+.|.+.++.|+++.|++-|+.+++...-
T Consensus        99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy  176 (459)
T KOG4340|consen   99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY  176 (459)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence            99887765322223455566777778888888776665542  1255778899999999999999999999999998777


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHH--HHHhhcccCCCChHH
Q 004249          260 EADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEI--LLTAIHWENVSDHAE  337 (765)
Q Consensus       260 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~~~~~~~  337 (765)
                      .+.  +-++++.++++.++++.|+++...+++.--.+.|..     .+|.       ..+.+.  ....-+......-.+
T Consensus       177 qpl--lAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl-----gIGm-------~tegiDvrsvgNt~~lh~Sal~e  242 (459)
T KOG4340|consen  177 QPL--LAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL-----GIGM-------TTEGIDVRSVGNTLVLHQSALVE  242 (459)
T ss_pred             Cch--hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc-----Cccc-------eeccCchhcccchHHHHHHHHHH
Confidence            766  667999999999999999999999888733333321     1111       111000  000000000011234


Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004249          338 SINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLL  417 (765)
Q Consensus       338 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  417 (765)
                      ++...+-++++.|+++.|.+.+..+--.....-+|..+.+++..- ..+++.+...-+.-.+.++|--.+..-++-.+|+
T Consensus       243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyC  321 (459)
T KOG4340|consen  243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYC  321 (459)
T ss_pred             HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            566667788899999999887765432221233566777776543 3456777777788888889977788888999999


Q ss_pred             HcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHH
Q 004249          418 EDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLL  497 (765)
Q Consensus       418 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~  497 (765)
                      +..-++.|..++-+-....          ..+.....+..+-.+-..+-..++|.+-+..+-.+..+      .-....+
T Consensus       322 KNeyf~lAADvLAEn~~lT----------yk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~------kLRklAi  385 (459)
T KOG4340|consen  322 KNEYFDLAADVLAENAHLT----------YKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTE------KLRKLAI  385 (459)
T ss_pred             hhHHHhHHHHHHhhCcchh----------HHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence            9999999988875433211          22233333333433334455566666555443321100      0000000


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCc
Q 004249          498 IIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHR  567 (765)
Q Consensus       498 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~  567 (765)
                      -......-........|++-|+.++++.       ...+...++ ++....++..+...|+...+...++
T Consensus       386 ~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y-------LPVlMa~Ak-iyW~~~Dy~~vEk~Fr~SvefC~eh  447 (459)
T KOG4340|consen  386 QVQEARHNRDDEAIRKAVNEYDETLEKY-------LPVLMAQAK-IYWNLEDYPMVEKIFRKSVEFCNDH  447 (459)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHH-------HHHHHHHHH-hhccccccHHHHHHHHHHHhhhccc
Confidence            0000100001112234455555555544       234555566 7888889999999998888765544

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.64  E-value=2.1e-14  Score=138.73  Aligned_cols=187  Identities=13%  Similarity=0.052  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH---HH
Q 004249           89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSS---LW  162 (765)
Q Consensus        89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~  162 (765)
                      .....++..|..++..|++++|+..|++++..+|.++   .+++.+|.++...|++++|+..|+++++..|+++.   ++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            3455778899999999999999999999999999876   68899999999999999999999999999998775   78


Q ss_pred             HHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004249          163 KLIFPWLIEQ--------GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGA  234 (765)
Q Consensus       163 ~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  234 (765)
                      +.+|.++...        |++++|+..|++++..+|++..++..+..+....+.                 .......+|
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~-----------------~~~~~~~~a  173 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR-----------------LAGKELYVA  173 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH-----------------HHHHHHHHH
Confidence            8899999876        789999999999999999987665333322211110                 012235678


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          235 KLYQKSGQIESSVDILEDYLKGHPTEAD-FGVIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       235 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                      .++...|++.+|+..+++++...|+.+. ..++..+|.++...|++++|..+++.+...
T Consensus       174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            8888889999999999998888887643 447788899999999999999888877765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.63  E-value=6.5e-12  Score=119.71  Aligned_cols=296  Identities=14%  Similarity=0.067  Sum_probs=178.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHH
Q 004249           92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK-DSSLWKLIFPWLI  170 (765)
Q Consensus        92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~  170 (765)
                      ...+..|..-+..|+|.+|.....+.-+..+.....+..-+.+.-.+|+++.|-.++.++.+..++ ...+....+.+..
T Consensus        85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll  164 (400)
T COG3071          85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL  164 (400)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence            344555666677788888887777766655555556666667777778888888877777776433 3355666777777


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HH--HHHHHHH--HHHcCCH--
Q 004249          171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI-EA--LKMGAKL--YQKSGQI--  243 (765)
Q Consensus       171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~--~~~la~~--~~~~g~~--  243 (765)
                      ..|++..|.....+++...|.++.+......+|...|++......+.+..+..--+. +.  +-..+..  +.+.++-  
T Consensus       165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~  244 (400)
T COG3071         165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG  244 (400)
T ss_pred             hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence            778888888888777777787777777777788888888777777777665432221 11  1111111  1111111  


Q ss_pred             -HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHH
Q 004249          244 -ESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEI  322 (765)
Q Consensus       244 -~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  322 (765)
                       +.=..+++..-..-..++.  +...++.-+...|+.++|.++.+.+++.    .-+.. ....+  -....+++..-++
T Consensus       245 ~~gL~~~W~~~pr~lr~~p~--l~~~~a~~li~l~~~~~A~~~i~~~Lk~----~~D~~-L~~~~--~~l~~~d~~~l~k  315 (400)
T COG3071         245 SEGLKTWWKNQPRKLRNDPE--LVVAYAERLIRLGDHDEAQEIIEDALKR----QWDPR-LCRLI--PRLRPGDPEPLIK  315 (400)
T ss_pred             chHHHHHHHhccHHhhcChh--HHHHHHHHHHHcCChHHHHHHHHHHHHh----ccChh-HHHHH--hhcCCCCchHHHH
Confidence             1112233332222223333  3446666777777777777777777766    11111 11111  1245556666666


Q ss_pred             HHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 004249          323 LLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQ  400 (765)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  400 (765)
                      ..++.+... |+++..+..+|.++++.+.|.+|..+|+.+++.  .| +...+..+|.++.+.|+..+|.+.+++++.
T Consensus       316 ~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         316 AAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RP-SASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             HHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            666665555 566666666677766666777777777666665  33 335566666666677776666666666664

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.61  E-value=6.7e-14  Score=135.17  Aligned_cols=190  Identities=12%  Similarity=0.025  Sum_probs=156.0

Q ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---H
Q 004249          122 EELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS---SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFK---L  195 (765)
Q Consensus       122 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~  195 (765)
                      +..+..++.+|..+...|++++|+..|++++...|.++   .+++.+|.++...|++++|+..++++++..|+++.   +
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            45568899999999999999999999999999998876   57889999999999999999999999999987765   6


Q ss_pred             HHHHHHHHHHh--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHH
Q 004249          196 KFHLASLYVEL--------GNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVID  267 (765)
Q Consensus       196 ~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~  267 (765)
                      ++.+|.++...        |++++|+..|++++..+|++..++..+..+....+    ..               .....
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~~---------------~~~~~  170 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----RL---------------AGKEL  170 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----HH---------------HHHHH
Confidence            88899999876        78999999999999999998765543332211110    00               01234


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC
Q 004249          268 LLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN  331 (765)
Q Consensus       268 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  331 (765)
                      .+|.++...|++.+|+..+++++..++. .+....+++.+|.++...|++++|..+++.+....
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY  233 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            7899999999999999999999998443 46678899999999999999999999999886554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.61  E-value=2e-14  Score=124.92  Aligned_cols=125  Identities=9%  Similarity=0.045  Sum_probs=94.5

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249          112 SVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPN  191 (765)
Q Consensus       112 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  191 (765)
                      ..|+++++.+|++   +..+|.++...|++++|+..|++++..+|.+..+|..+|.++...|++++|+..|++++..+|+
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            4566777777664   5566777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004249          192 DFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK  239 (765)
Q Consensus       192 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  239 (765)
                      ++.+++.+|.++...|++++|+..|++++...|+++..+..++.+...
T Consensus        91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359         91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            777777777777777777777777777777777777777766665543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=2.5e-12  Score=116.77  Aligned_cols=384  Identities=12%  Similarity=0.008  Sum_probs=254.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL  169 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  169 (765)
                      ....+-..|.+|+...+|..|..+|++.-...|......+.-+..+++.+.+..|+.........+.-.......-+.+.
T Consensus        43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIk  122 (459)
T KOG4340|consen   43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIK  122 (459)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence            33445566899999999999999999999999998888899999999999999999998877643211224444556677


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004249          170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDI  249 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  249 (765)
                      +..+++..+....++.-.  .++.+.....|-+.++.|+++.|++-|+.+++...-++.+-++++.++++.|+++.|+++
T Consensus       123 Yse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~  200 (459)
T KOG4340|consen  123 YSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKH  200 (459)
T ss_pred             cccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHH
Confidence            888899888877766421  256788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCC-CCHHHHHHHHHHH-----HHhccH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHH
Q 004249          250 LEDYLKGHPTE-ADFGVIDLLASML-----VQMNAY-DRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEI  322 (765)
Q Consensus       250 ~~~~~~~~p~~-~~~~~~~~l~~~~-----~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  322 (765)
                      ..+.++..-.+ +..    .+|..-     ...|+. .-++.              ...++....+.++++.|+++.|.+
T Consensus       201 iSEIieRG~r~HPEl----gIGm~tegiDvrsvgNt~~lh~S--------------al~eAfNLKaAIeyq~~n~eAA~e  262 (459)
T KOG4340|consen  201 ISEIIERGIRQHPEL----GIGMTTEGIDVRSVGNTLVLHQS--------------ALVEAFNLKAAIEYQLRNYEAAQE  262 (459)
T ss_pred             HHHHHHhhhhcCCcc----CccceeccCchhcccchHHHHHH--------------HHHHHhhhhhhhhhhcccHHHHHH
Confidence            88887653222 221    111110     011111 11111              122334445667888999999988


Q ss_pred             HHHhhcccC-CCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          323 LLTAIHWEN-VSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQI  401 (765)
Q Consensus       323 ~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  401 (765)
                      .+..+-... ..-+|..+.+++..- ..+++.+...-++-++.+  .|--++.+.++-.+|++..-++.|...+-+    
T Consensus       263 aLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNeyf~lAADvLAE----  335 (459)
T KOG4340|consen  263 ALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEYFDLAADVLAE----  335 (459)
T ss_pred             HhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHHHhHHHHHHhh----
Confidence            887764322 123455666666543 345666677777777777  787778888888888888777777665433    


Q ss_pred             cCCCH-----HHHHHHHHHHHH-cCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcc-----hhHH
Q 004249          402 LEDNI-----DARLTLASLLLE-DAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKG-----MIEG  470 (765)
Q Consensus       402 ~p~~~-----~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----~~~~  470 (765)
                      +|+..     ...+.+-..+.- .-..++|.+-+......-.              .+..-.-+.+-....     ....
T Consensus       336 n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~--------------~kLRklAi~vQe~r~~~dd~a~R~  401 (459)
T KOG4340|consen  336 NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLT--------------EKLRKLAIQVQEARHNRDDEAIRK  401 (459)
T ss_pred             CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhcccHHHHHH
Confidence            34322     223333333332 3356666655543322100              011111122222111     1223


Q ss_pred             HHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhcc
Q 004249          471 FVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGY  526 (765)
Q Consensus       471 A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  526 (765)
                      +++.|...+.            --..+++..+.+++...+|..+.+.|+.....+.
T Consensus       402 ai~~Yd~~LE------------~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~  445 (459)
T KOG4340|consen  402 AVNEYDETLE------------KYLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN  445 (459)
T ss_pred             HHHHHHHHHH------------HHHHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence            3333333332            2234667788999999999999999999988773

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.58  E-value=1.1e-13  Score=131.12  Aligned_cols=321  Identities=16%  Similarity=0.117  Sum_probs=202.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCCH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELP----NSYHILGLVHDALGNTAKAMGCYWLAACY------KQKDS  159 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------~p~~~  159 (765)
                      ....+-..|..+++.|++...+.+|+.+++....+.    .+|..+|.+|+.+++|.+|+++-..-+.+      .-...
T Consensus        16 SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA   95 (639)
T KOG1130|consen   16 SCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA   95 (639)
T ss_pred             HHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc
Confidence            456667788999999999999999999999877654    57889999999999999999886533322      12233


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004249          160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADP------NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMG  233 (765)
Q Consensus       160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  233 (765)
                      ...-+||..+...|.|++|+.+..+-+....      ....+++++|.+|...|+.-.-..-    -+....+.++.   
T Consensus        96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p----ee~g~f~~ev~---  168 (639)
T KOG1130|consen   96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP----EEKGAFNAEVT---  168 (639)
T ss_pred             cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh----hhcccccHHHH---
Confidence            4456789999999999999999888776521      2356889999999887752110000    00000000000   


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCC----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC--CCCccHHHHHHH
Q 004249          234 AKLYQKSGQIESSVDILEDYLKGHPTE----ADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYS--GKELLLALKIKA  307 (765)
Q Consensus       234 a~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~l  307 (765)
                             ..++.|.++|..-+++....    ..-+++-++|..|+-+|+|+.|+..-+.-+.+...  +......++.++
T Consensus       169 -------~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNl  241 (639)
T KOG1130|consen  169 -------SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNL  241 (639)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhccc
Confidence                   01122223332222221110    00113445666666666666666555544433111  011122345556


Q ss_pred             HHHHHhcCChhHHHHHHHhhcc-----cCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhcc----CCCCCHHHHHHH
Q 004249          308 GICHIQLGNTDKAEILLTAIHW-----ENVSDHAESINEIADLFKNRELYSTALKYYHMLEANA----GVHNDGCLHLKI  378 (765)
Q Consensus       308 ~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l  378 (765)
                      |.+++-.|+++.|+++|+..+.     .+........+.+|..|.-..++++|+.++.+-+.+.    .......+++.+
T Consensus       242 gN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSL  321 (639)
T KOG1130|consen  242 GNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSL  321 (639)
T ss_pred             chhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            6666666666666666665321     1113345678889999999999999999998877652    123456788999


Q ss_pred             HHHHHHhccHHHHHHHHHHHHHHc-----CC-CHHHHHHHHHHHHHcCCHHH
Q 004249          379 AECSLALKEREKSIIYFYKALQIL-----ED-NIDARLTLASLLLEDAKDEE  424 (765)
Q Consensus       379 a~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~l~~~~~~~g~~~~  424 (765)
                      |..+...|..++|+.+.+..+++.     |. ...+...+...-...|..+.
T Consensus       322 gna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds  373 (639)
T KOG1130|consen  322 GNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS  373 (639)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence            999999999999999888877653     22 23566777777777776544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.57  E-value=9.1e-14  Score=120.85  Aligned_cols=127  Identities=13%  Similarity=0.085  Sum_probs=115.1

Q ss_pred             HHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 004249          145 MGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCP  224 (765)
Q Consensus       145 ~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  224 (765)
                      ...|+++++++|++   +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46788999988875   567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q 004249          225 ENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM  276 (765)
Q Consensus       225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~  276 (765)
                      +++.+++.+|.++...|++++|+..|++++...|+++.  .+..++.+....
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~--~~~~~~~~~~~l  139 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS--WSEIRQNAQIMV  139 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987  455666665443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.56  E-value=2.2e-11  Score=116.22  Aligned_cols=297  Identities=16%  Similarity=0.082  Sum_probs=232.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhC
Q 004249          129 HILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADP-NDFKLKFHLASLYVELG  207 (765)
Q Consensus       129 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g  207 (765)
                      ..-|..-+..|+|.+|.+...+.-+..+...-++..-+.+.-+.|+++.|-.++.++-+..+ +...+....+.+....|
T Consensus        88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~  167 (400)
T COG3071          88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR  167 (400)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence            34466667789999999999999888877778888888999999999999999999999844 34567888999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHH--HHHHhccHHHHHH
Q 004249          208 NFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-FGVIDLLAS--MLVQMNAYDRVLK  284 (765)
Q Consensus       208 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~--~~~~~~~~~~A~~  284 (765)
                      ++..|.....++++..|.++.++.....+|...|++.+...++.++-+..--+.. ..-+...+.  ++-+..+-..+..
T Consensus       168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g  247 (400)
T COG3071         168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG  247 (400)
T ss_pred             CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence            9999999999999999999999999999999999999999999887765433222 111111111  1112222222222


Q ss_pred             HHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHh
Q 004249          285 HIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEA  364 (765)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  364 (765)
                       +....+..+..-...+.+...++.-+...|+.++|.+.....++...  ++.....++  ....++...=++..++.++
T Consensus       248 -L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~--D~~L~~~~~--~l~~~d~~~l~k~~e~~l~  322 (400)
T COG3071         248 -LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW--DPRLCRLIP--RLRPGDPEPLIKAAEKWLK  322 (400)
T ss_pred             -HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc--ChhHHHHHh--hcCCCCchHHHHHHHHHHH
Confidence             22222222222445567777888889999999999999999987652  233222222  2567888888999999998


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCC
Q 004249          365 NAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPM  433 (765)
Q Consensus       365 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  433 (765)
                      .  .|++|..+..+|.++.+.+.+.+|..+|+.+++..|. ...+..+|.++.+.|+..+|.+..+.++
T Consensus       323 ~--h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         323 Q--HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             h--CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            8  9999999999999999999999999999999998665 5678889999999999999999887765

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.55  E-value=6.9e-13  Score=121.84  Aligned_cols=156  Identities=10%  Similarity=0.102  Sum_probs=132.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH
Q 004249           96 GDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDT  175 (765)
Q Consensus        96 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~  175 (765)
                      .-+..|+..|+++......++..  +|..         -+...++.++++..++++++.+|++..+|..+|.++...|++
T Consensus        21 ~~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~   89 (198)
T PRK10370         21 LCVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY   89 (198)
T ss_pred             HHHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Confidence            34567889999988654442221  2211         111267789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249          176 TWAMSCLSEAVKADPNDFKLKFHLASLY-VELGN--FQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILED  252 (765)
Q Consensus       176 ~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  252 (765)
                      ++|+.+|++++.++|+++.++..+|.++ ...|+  +++|...++++++.+|+++.++..+|..+...|++++|+..+++
T Consensus        90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~  169 (198)
T PRK10370         90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK  169 (198)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999999999999975 67777  59999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCC
Q 004249          253 YLKGHPTEAD  262 (765)
Q Consensus       253 ~~~~~p~~~~  262 (765)
                      +++..|.+..
T Consensus       170 aL~l~~~~~~  179 (198)
T PRK10370        170 VLDLNSPRVN  179 (198)
T ss_pred             HHhhCCCCcc
Confidence            9999888766

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.52  E-value=2.5e-12  Score=116.12  Aligned_cols=182  Identities=18%  Similarity=0.135  Sum_probs=160.8

Q ss_pred             CHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249          106 RYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEA  185 (765)
Q Consensus       106 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  185 (765)
                      +...+...+-.....+|.+..+ ..++..+...|+-+.+..+..++....|.+......+|...+..|++.+|+..+.++
T Consensus        48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA  126 (257)
T COG5010          48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA  126 (257)
T ss_pred             hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            3344666666777788999888 889999999999999999999988888999888888999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHH
Q 004249          186 VKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGV  265 (765)
Q Consensus       186 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  265 (765)
                      ....|++..+|..+|.+|.+.|+++.|...|.+++++.|.++.+..++|..+.-.|+++.|..++..+....+.+..  +
T Consensus       127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~--v  204 (257)
T COG5010         127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR--V  204 (257)
T ss_pred             hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH--H
Confidence            99999999999999999999999999999999999999999999999999999999999999999998887776665  6


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHH
Q 004249          266 IDLLASMLVQMNAYDRVLKHIELVD  290 (765)
Q Consensus       266 ~~~l~~~~~~~~~~~~A~~~~~~~~  290 (765)
                      ..+++.+....|++++|..+..+-+
T Consensus       205 ~~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         205 RQNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             HHHHHHHHhhcCChHHHHhhccccc
Confidence            7799999999999999988765543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.51  E-value=7.8e-13  Score=121.51  Aligned_cols=126  Identities=17%  Similarity=0.238  Sum_probs=119.3

Q ss_pred             cCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 004249          104 LGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL-IEQGD--TTWAMS  180 (765)
Q Consensus       104 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~-~~~g~--~~~A~~  180 (765)
                      .++.++++..+++++..+|+++..|..+|.++...|++++|+..|++++.++|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            677899999999999999999999999999999999999999999999999999999999999975 67787  599999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 004249          181 CLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA  229 (765)
Q Consensus       181 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  229 (765)
                      .++++++.+|+++.++..+|..+...|++++|+..++++++..|.+..-
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r  180 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR  180 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence            9999999999999999999999999999999999999999999887543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.50  E-value=5.1e-12  Score=137.30  Aligned_cols=149  Identities=12%  Similarity=0.070  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 004249           89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPW  168 (765)
Q Consensus        89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~  168 (765)
                      .....+...+..+...+++++|+.+++..+...|+....++.+|.++.+.+++.++...  .++...+.+.         
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~---------   97 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL---------   97 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc---------
Confidence            34455666677788999999999999999999999999999999999999987776655  4444433332         


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004249          169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVD  248 (765)
Q Consensus       169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  248 (765)
                           ++ .++.++...+...+.+..+++.+|.||-++|+.++|...++++++.+|+++.++.++|..|... ++++|+.
T Consensus        98 -----~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~  170 (906)
T PRK14720         98 -----KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT  170 (906)
T ss_pred             -----ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence                 22 2233333333334444445555555555555555555555555555555555555555555555 5555555


Q ss_pred             HHHHHHh
Q 004249          249 ILEDYLK  255 (765)
Q Consensus       249 ~~~~~~~  255 (765)
                      ++.+++.
T Consensus       171 m~~KAV~  177 (906)
T PRK14720        171 YLKKAIY  177 (906)
T ss_pred             HHHHHHH
Confidence            5555443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.49  E-value=3.8e-10  Score=132.46  Aligned_cols=388  Identities=14%  Similarity=-0.014  Sum_probs=266.8

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVK-ADPNDFKLKFHLASLYV  204 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~  204 (765)
                      ..+...+..+...|++.+|+..+..+-.. +.-.......+......|++..+..++..+-. ....++......+.++.
T Consensus       342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~  420 (903)
T PRK04841        342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ  420 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence            34555667778888888888766654211 11123344466777788888887777655311 11233445567788888


Q ss_pred             HhCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHH
Q 004249          205 ELGNFQRAADVYRQMVQLCPE---------NIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD---FGVIDLLASM  272 (765)
Q Consensus       205 ~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~~~l~~~  272 (765)
                      ..|++++|...+..+....+.         .......++.++...|++++|...+++++...+....   ..+...+|.+
T Consensus       421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~  500 (903)
T PRK04841        421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV  500 (903)
T ss_pred             HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence            999999999999988764332         1234456778888999999999999999886554332   1245678888


Q ss_pred             HHHhccHHHHHHHHHHHHHHhcCCCCc--cHHHHHHHHHHHHhcCChhHHHHHHHhhcccC----C---CChHHHHHHHH
Q 004249          273 LVQMNAYDRVLKHIELVDLVYYSGKEL--LLALKIKAGICHIQLGNTDKAEILLTAIHWEN----V---SDHAESINEIA  343 (765)
Q Consensus       273 ~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~---~~~~~~~~~la  343 (765)
                      +...|++++|...+.+++.........  .......++.++...|++++|...+.+++...    .   +.....+..+|
T Consensus       501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  580 (903)
T PRK04841        501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA  580 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence            999999999999999998764422221  22355677889999999999999998875421    1   11223456778


Q ss_pred             HHHHccccHHHHHHHHHHHHhccC--C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH---HHHH----HHH
Q 004249          344 DLFKNRELYSTALKYYHMLEANAG--V-HNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNI---DARL----TLA  413 (765)
Q Consensus       344 ~~~~~~g~~~~A~~~~~~~~~~~~--~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~----~l~  413 (765)
                      .++...|++++|...+.+++....  . ......+..+|.++...|++++|...+.++....+...   ....    ...
T Consensus       581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  660 (903)
T PRK04841        581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL  660 (903)
T ss_pred             HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence            888899999999999998876521  1 12345666789999999999999999999987643221   1111    122


Q ss_pred             HHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhh
Q 004249          414 SLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEE  493 (765)
Q Consensus       414 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~  493 (765)
                      ..+...|+.+.|...+.......+..       . +........++.++...|++++|...+.+++.....   .-....
T Consensus       661 ~~~~~~g~~~~A~~~l~~~~~~~~~~-------~-~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~---~g~~~~  729 (903)
T PRK04841        661 IYWQMTGDKEAAANWLRQAPKPEFAN-------N-HFLQGQWRNIARAQILLGQFDEAEIILEELNENARS---LRLMSD  729 (903)
T ss_pred             HHHHHCCCHHHHHHHHHhcCCCCCcc-------c-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---hCchHH
Confidence            44455789999999887665422211       1 111233567888999999999999988888753211   002234


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhc
Q 004249          494 HRLLIIDLCKTLASLHRYEDAIKIINLILKLG  525 (765)
Q Consensus       494 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  525 (765)
                      ...++..+|.++...|+.++|...+.+++.+.
T Consensus       730 ~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        730 LNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            45677788899999999999999999999877

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.49  E-value=7.6e-12  Score=113.02  Aligned_cols=181  Identities=18%  Similarity=0.167  Sum_probs=165.0

Q ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004249          141 TAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMV  220 (765)
Q Consensus       141 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  220 (765)
                      ...+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+...+..+|...+..|++..|+..++++.
T Consensus        49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~  127 (257)
T COG5010          49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA  127 (257)
T ss_pred             hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence            344666777777889999999 8999999999999999999999998899999999889999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCcc
Q 004249          221 QLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELL  300 (765)
Q Consensus       221 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  300 (765)
                      ...|++..+|..+|.+|.+.|+++.|...|.+++++.|.++.  +.+++|..+.-.|+++.|..++..+...    .+.+
T Consensus       128 ~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~--~~nNlgms~~L~gd~~~A~~lll~a~l~----~~ad  201 (257)
T COG5010         128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS--IANNLGMSLLLRGDLEDAETLLLPAYLS----PAAD  201 (257)
T ss_pred             ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch--hhhhHHHHHHHcCCHHHHHHHHHHHHhC----CCCc
Confidence            999999999999999999999999999999999999999988  7889999999999999999999999887    6667


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHhhc
Q 004249          301 LALKIKAGICHIQLGNTDKAEILLTAIH  328 (765)
Q Consensus       301 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~  328 (765)
                      ..+..+++.+....|++++|.....+-+
T Consensus       202 ~~v~~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         202 SRVRQNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             hHHHHHHHHHHhhcCChHHHHhhccccc
Confidence            8888899999999999999988776643

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.47  E-value=1.8e-11  Score=109.15  Aligned_cols=175  Identities=21%  Similarity=0.183  Sum_probs=158.8

Q ss_pred             cHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249           88 CPEIRRMLGD-ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIF  166 (765)
Q Consensus        88 ~~~~~~~~~~-a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la  166 (765)
                      -++...++.+ ..+.+..|+.+-|..++++.....|++..+-...|..+...|++++|+++|...++-+|.+...+....
T Consensus        48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl  127 (289)
T KOG3060|consen   48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL  127 (289)
T ss_pred             CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence            3455555543 466788999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---H
Q 004249          167 PWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ---I  243 (765)
Q Consensus       167 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~  243 (765)
                      .+...+|+.-+|++.+...++..+.|.++|..++.+|...|+|++|.-++++++-+.|.++-.+..+|.+++..|.   +
T Consensus       128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~  207 (289)
T KOG3060|consen  128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL  207 (289)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence            8888999999999999999999999999999999999999999999999999999999999999999999988764   6


Q ss_pred             HHHHHHHHHHHhcCCCCCC
Q 004249          244 ESSVDILEDYLKGHPTEAD  262 (765)
Q Consensus       244 ~~A~~~~~~~~~~~p~~~~  262 (765)
                      .-|.++|.++++++|.+..
T Consensus       208 ~~arkyy~~alkl~~~~~r  226 (289)
T KOG3060|consen  208 ELARKYYERALKLNPKNLR  226 (289)
T ss_pred             HHHHHHHHHHHHhChHhHH
Confidence            6799999999999996543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.47  E-value=1.4e-10  Score=135.95  Aligned_cols=379  Identities=13%  Similarity=0.036  Sum_probs=264.7

Q ss_pred             HHHHHHHHhhcCCCcchhhhhccccccccCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hhCCCch
Q 004249           48 RRRFEAIIFGFGSRKRSREASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIR-LEEELPN  126 (765)
Q Consensus        48 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~p~~~~  126 (765)
                      ..+....+..+...|....+....          ......+.........+..+...|++..+...+..+-. ....++.
T Consensus       341 ~~lh~raa~~~~~~g~~~~Al~~a----------~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~  410 (903)
T PRK04841        341 PELHRAAAEAWLAQGFPSEAIHHA----------LAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPR  410 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHH----------HHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcc
Confidence            344445566666667766665544          11111122222334556777888998887777665411 1224455


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----
Q 004249          127 SYHILGLVHDALGNTAKAMGCYWLAACYKQK---------DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF----  193 (765)
Q Consensus       127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----  193 (765)
                      .....+.++...|++++|...+..+....+.         .......++.++...|++++|...+++++...+...    
T Consensus       411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  490 (903)
T PRK04841        411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR  490 (903)
T ss_pred             hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH
Confidence            6677888889999999999999887654221         123445578888999999999999999998544322    


Q ss_pred             -HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----C
Q 004249          194 -KLKFHLASLYVELGNFQRAADVYRQMVQLCPEN------IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTE-----A  261 (765)
Q Consensus       194 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~  261 (765)
                       .+...+|.++...|++++|...+.+++......      ..++..+|.++...|++++|...+++++......     .
T Consensus       491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  570 (903)
T PRK04841        491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP  570 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence             355778899999999999999999998764322      2456788999999999999999999988753221     1


Q ss_pred             -CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCC-ccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCC--CChHH
Q 004249          262 -DFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKE-LLLALKIKAGICHIQLGNTDKAEILLTAIHWENV--SDHAE  337 (765)
Q Consensus       262 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~  337 (765)
                       ....+..+|.++...|++++|...+.+++.......+ .....+..++.++...|++++|...+..+.....  .....
T Consensus       571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~  650 (903)
T PRK04841        571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD  650 (903)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence             1223457888999999999999999999887442221 2344566688899999999999999988753211  11111


Q ss_pred             HHH----HHHHHHHccccHHHHHHHHHHHHhccCCCCCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHHcC------
Q 004249          338 SIN----EIADLFKNRELYSTALKYYHMLEANAGVHNDG----CLHLKIAECSLALKEREKSIIYFYKALQILE------  403 (765)
Q Consensus       338 ~~~----~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------  403 (765)
                      ...    .....+...|+.+.|..++......  .+...    ..+..++.++...|++++|...+++++....      
T Consensus       651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~  728 (903)
T PRK04841        651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKP--EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS  728 (903)
T ss_pred             HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC--CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence            111    1224445688999999998776543  22221    2256789999999999999999999988632      


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCcccc
Q 004249          404 DNIDARLTLASLLLEDAKDEEAISLLTPPMSLENK  438 (765)
Q Consensus       404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  438 (765)
                      ....++..+|.++...|+.++|...+.++++....
T Consensus       729 ~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        729 DLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            12356778999999999999999999998875543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.45  E-value=1.3e-11  Score=134.24  Aligned_cols=242  Identities=10%  Similarity=0.002  Sum_probs=174.6

Q ss_pred             hhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004249          120 LEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHL  199 (765)
Q Consensus       120 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  199 (765)
                      .+|.+..++..++..+...|++++|+..++.+++..|+...+++.+|.++.+.+++.++...  .++...+         
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~---------   94 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS---------   94 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc---------
Confidence            45777889999999998899999999999999999999999999999988888886666554  4444333         


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccH
Q 004249          200 ASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAY  279 (765)
Q Consensus       200 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~  279 (765)
                           ...++ .+++++...+...+++..+++.+|.+|-++|+.++|...|+++++.+|+++.  +++++|..|... +.
T Consensus        95 -----~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~--aLNn~AY~~ae~-dL  165 (906)
T PRK14720         95 -----QNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE--IVKKLATSYEEE-DK  165 (906)
T ss_pred             -----cccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHh-hH
Confidence                 33344 4555555566667788889999999999999999999999999999999988  899999999999 99


Q ss_pred             HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhccc-CCCChHHHHHHHHHHHHccccHHHHHHH
Q 004249          280 DRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWE-NVSDHAESINEIADLFKNRELYSTALKY  358 (765)
Q Consensus       280 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~  358 (765)
                      ++|+.++.+++..+-.........-.....|.....+.+.-..+.+++... ........+.-+-..|...++|++++.+
T Consensus       166 ~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i  245 (906)
T PRK14720        166 EKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI  245 (906)
T ss_pred             HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence            999999999998832111111111112222222333333333333333221 1122234445555777778888888888


Q ss_pred             HHHHHhccCCCCCHHHHHHHHHHHH
Q 004249          359 YHMLEANAGVHNDGCLHLKIAECSL  383 (765)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~la~~~~  383 (765)
                      ++.+++.  +|.+..+...++.||.
T Consensus       246 LK~iL~~--~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        246 LKKILEH--DNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHhc--CCcchhhHHHHHHHHH
Confidence            8888888  7888888888888876

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.44  E-value=1e-11  Score=134.45  Aligned_cols=156  Identities=12%  Similarity=0.078  Sum_probs=140.9

Q ss_pred             CHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249          106 RYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEA  185 (765)
Q Consensus       106 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  185 (765)
                      ...+++.-+....+..|.+++++..||.+....|.+++|...++.++++.|++..++..++.++.+.+++++|+..++++
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~  146 (694)
T PRK15179         67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELY  146 (694)
T ss_pred             chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            34445555555566788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 004249          186 VKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA  261 (765)
Q Consensus       186 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  261 (765)
                      +..+|+++.+++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|++++....+-.
T Consensus       147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~  222 (694)
T PRK15179        147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA  222 (694)
T ss_pred             hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998765543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.43  E-value=9.3e-11  Score=104.71  Aligned_cols=198  Identities=18%  Similarity=0.118  Sum_probs=163.2

Q ss_pred             CCHHHHHHHHHHHHHhh------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249          105 GRYEEAISVLHEVIRLE------EELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWA  178 (765)
Q Consensus       105 g~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A  178 (765)
                      .+.++-++++.+++...      |+....+-....+....|+.+-|..++.+.....|.+..+...-|..+...|++++|
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A  105 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA  105 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence            34444444444444332      233345556667778889999999999998888899999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004249          179 MSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHP  258 (765)
Q Consensus       179 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  258 (765)
                      +++|+..++.+|.+..++-....+...+|+.-+|++.+...++.++.+.++|..++.+|...|+|++|.-++++++-..|
T Consensus       106 ~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P  185 (289)
T KOG3060|consen  106 IEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP  185 (289)
T ss_pred             HHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence            99999999999999999888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 004249          259 TEADFGVIDLLASMLVQMN---AYDRVLKHIELVDLVYYSGKELLLALKIKAG  308 (765)
Q Consensus       259 ~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~  308 (765)
                      .++.  .+..+|.+++-.|   +..-|.++|.+++++    .+.+...++.+-
T Consensus       186 ~n~l--~f~rlae~~Yt~gg~eN~~~arkyy~~alkl----~~~~~ral~GI~  232 (289)
T KOG3060|consen  186 FNPL--YFQRLAEVLYTQGGAENLELARKYYERALKL----NPKNLRALFGIY  232 (289)
T ss_pred             CcHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh----ChHhHHHHHHHH
Confidence            9876  5668899888776   566789999999998    444444444443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.42  E-value=4.7e-12  Score=110.29  Aligned_cols=115  Identities=22%  Similarity=0.284  Sum_probs=63.0

Q ss_pred             HHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249          113 VLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND  192 (765)
Q Consensus       113 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  192 (765)
                      .|++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|.+
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~   84 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD   84 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 004249          193 FKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI  227 (765)
Q Consensus       193 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  227 (765)
                      +..++.+|.++...|++++|+..|+++++.+|++.
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  119 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEICGENP  119 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            55555555555555555555555555555555443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.41  E-value=1.2e-11  Score=107.75  Aligned_cols=117  Identities=16%  Similarity=0.110  Sum_probs=110.7

Q ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 004249          146 GCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE  225 (765)
Q Consensus       146 ~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  225 (765)
                      ..+++++..+|++..+...+|.++...|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249          226 NIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD  262 (765)
Q Consensus       226 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  262 (765)
                      ++..++.+|.++...|++++|+..++++++.+|++..
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            9999999999999999999999999999999998876

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.39  E-value=2.3e-10  Score=117.32  Aligned_cols=292  Identities=15%  Similarity=0.083  Sum_probs=212.1

Q ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 004249          124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLY  203 (765)
Q Consensus       124 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  203 (765)
                      .......++..+...|-...|+..|++.        ..|.....||...|+..+|..+..+-++ .|.++..|..+|++.
T Consensus       397 ~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~  467 (777)
T KOG1128|consen  397 IWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVL  467 (777)
T ss_pred             cchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhc
Confidence            3456677888899999999999888764        4577788888889988888888888888 666788888888887


Q ss_pred             HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHH
Q 004249          204 VELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVL  283 (765)
Q Consensus       204 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~  283 (765)
                      ....-|++|.++.+..      +..+...+|......++|+++...++..++++|-...  .|+.+|.+..+.++++.|.
T Consensus       468 ~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~--~wf~~G~~ALqlek~q~av  539 (777)
T KOG1128|consen  468 HDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG--TWFGLGCAALQLEKEQAAV  539 (777)
T ss_pred             cChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh--HHHhccHHHHHHhhhHHHH
Confidence            7776677776666554      2346677777777788999999999999999888877  7889999999999999999


Q ss_pred             HHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 004249          284 KHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLE  363 (765)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  363 (765)
                      ..|..++..    .|....+|.+++.+|+..++-.+|...++++++-+ ..+..+|.+...+..+.|.+++|++.+.+.+
T Consensus       540 ~aF~rcvtL----~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll  614 (777)
T KOG1128|consen  540 KAFHRCVTL----EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL  614 (777)
T ss_pred             HHHHHHhhc----CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence            999999888    88888899999999999999999999999988766 7778888888888889999999999999888


Q ss_pred             hccCCCCCHHHHHHHHHHHHHh-----ccHHHHHH-----HHHHHHHHcCCCHHHHHHHHHHHH-----HcCCHHHHHHh
Q 004249          364 ANAGVHNDGCLHLKIAECSLAL-----KEREKSII-----YFYKALQILEDNIDARLTLASLLL-----EDAKDEEAISL  428 (765)
Q Consensus       364 ~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~-----~~~~al~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~  428 (765)
                      .+.....++.+...+.......     ++-..+..     .+-+.+..--+.+..|...+..+.     ..+..++|.+.
T Consensus       615 ~~~~~~~d~~vl~~iv~~~~~~~~d~s~de~~~~k~~~kelmg~~~~qv~~s~~~wrL~a~l~~~~~~ek~~~~eka~~~  694 (777)
T KOG1128|consen  615 DLRKKYKDDEVLLIIVRTVLEGMTDESGDEATGLKGKLKELLGKVLSQVTNSPETWRLYALLYGNGSSEKLDENEKAYRA  694 (777)
T ss_pred             HhhhhcccchhhHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhCchhhhHhHhhhccccchhcccccHHHHhh
Confidence            7743444545444443333221     22222222     222333333335555555454221     22445566666


Q ss_pred             cCCCCCccc
Q 004249          429 LTPPMSLEN  437 (765)
Q Consensus       429 ~~~~~~~~~  437 (765)
                      ..+......
T Consensus       695 l~k~~~~~s  703 (777)
T KOG1128|consen  695 LSKAYKCDT  703 (777)
T ss_pred             hhhCccccc
Confidence            666555443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.38  E-value=5.4e-11  Score=128.99  Aligned_cols=150  Identities=11%  Similarity=-0.041  Sum_probs=138.5

Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 004249          144 AMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLC  223 (765)
Q Consensus       144 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  223 (765)
                      ++.-........|.++.++..||.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++...
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~  150 (694)
T PRK15179         71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG  150 (694)
T ss_pred             hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence            33333344455688999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Q 004249          224 PENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYS  295 (765)
Q Consensus       224 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  295 (765)
                      |++..+++.+|.++...|++++|+.+|++++..+|++..  ++..+|.++...|+.++|...|++++....+
T Consensus       151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~--~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFEN--GYVGWAQSLTRRGALWRARDVLQAGLDAIGD  220 (694)
T ss_pred             CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence            999999999999999999999999999999998888777  7889999999999999999999999998543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.38  E-value=8.2e-12  Score=114.95  Aligned_cols=120  Identities=17%  Similarity=0.120  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI  170 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  170 (765)
                      ...+-.+|..++..++|.+|+..|.++|.++|.++..|...+.+|.++|.++.|++.++.++.++|....+|..||.+|.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            34455778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHH
Q 004249          171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQ  210 (765)
Q Consensus       171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  210 (765)
                      .+|++.+|+..|+++++++|++......|..+-...++..
T Consensus       161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999877777766665555544

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.37  E-value=2.1e-11  Score=124.77  Aligned_cols=224  Identities=13%  Similarity=0.078  Sum_probs=193.5

Q ss_pred             CCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH
Q 004249           85 KKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKL  164 (765)
Q Consensus        85 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~  164 (765)
                      ..++|--......|..++..|-...|+.+|++.        ..|-....||...|+..+|.....+-++ .|.++..|..
T Consensus       392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~  462 (777)
T KOG1128|consen  392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCL  462 (777)
T ss_pred             CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHH
Confidence            345555555566678899999999999999875        5667788999999999999999999998 6778888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004249          165 IFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE  244 (765)
Q Consensus       165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  244 (765)
                      +|.+.....-|++|.++.+..      +..+...+|......++|.++..+++..++++|-....|+.+|.+..+.++++
T Consensus       463 LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q  536 (777)
T KOG1128|consen  463 LGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ  536 (777)
T ss_pred             hhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence            888877766666666665543      44577788888888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHH
Q 004249          245 SSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILL  324 (765)
Q Consensus       245 ~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  324 (765)
                      .|...|..++...|++..  +|++++..|.+.++-.+|...++++++.    +..+..+|.+...+....|.+++|++.+
T Consensus       537 ~av~aF~rcvtL~Pd~~e--aWnNls~ayi~~~~k~ra~~~l~EAlKc----n~~~w~iWENymlvsvdvge~eda~~A~  610 (777)
T KOG1128|consen  537 AAVKAFHRCVTLEPDNAE--AWNNLSTAYIRLKKKKRAFRKLKEALKC----NYQHWQIWENYMLVSVDVGEFEDAIKAY  610 (777)
T ss_pred             HHHHHHHHHhhcCCCchh--hhhhhhHHHHHHhhhHHHHHHHHHHhhc----CCCCCeeeechhhhhhhcccHHHHHHHH
Confidence            999999999999999988  8999999999999999999999999998    5677788888888889999999999999


Q ss_pred             Hhhcc
Q 004249          325 TAIHW  329 (765)
Q Consensus       325 ~~~~~  329 (765)
                      .+++.
T Consensus       611 ~rll~  615 (777)
T KOG1128|consen  611 HRLLD  615 (777)
T ss_pred             HHHHH
Confidence            99763

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.35  E-value=6.9e-12  Score=119.07  Aligned_cols=290  Identities=13%  Similarity=0.073  Sum_probs=203.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHH
Q 004249          130 ILGLVHDALGNTAKAMGCYWLAACYKQKDS----SLWKLIFPWLIEQGDTTWAMSCLSEAVKA------DPNDFKLKFHL  199 (765)
Q Consensus       130 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l  199 (765)
                      .-|.-++++|++...+.+|+.+++...++.    .+|..||.+|+.+++|++|+++-..=+.+      .-....+.-++
T Consensus        22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL  101 (639)
T KOG1130|consen   22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL  101 (639)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence            346778889999999999999999876664    45677899999999999999875443322      22334556788


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 004249          200 ASLYVELGNFQRAADVYRQMVQLCPE------NIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASML  273 (765)
Q Consensus       200 a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~  273 (765)
                      |.++...|.|++|+.+..+-+.....      ...+++++|.+|...|+.-..         ..|....  ....     
T Consensus       102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~---------~~pee~g--~f~~-----  165 (639)
T KOG1130|consen  102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL---------EAPEEKG--AFNA-----  165 (639)
T ss_pred             cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC---------CChhhcc--cccH-----
Confidence            99999999999999888877654322      246788888888887763211         1221111  0000     


Q ss_pred             HHhccHHHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHhcCChhHHHHHHHhhcc---cCC--CChHHHHHHHHHHH
Q 004249          274 VQMNAYDRVLKHIELVDLVYYSG--KELLLALKIKAGICHIQLGNTDKAEILLTAIHW---ENV--SDHAESINEIADLF  346 (765)
Q Consensus       274 ~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~--~~~~~~~~~la~~~  346 (765)
                      .-...++.|.++|..-+++....  ......++-++|..|+-+|+++.|+...+.-+.   +..  ...-.++.++|.++
T Consensus       166 ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~h  245 (639)
T KOG1130|consen  166 EVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCH  245 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhh
Confidence            01123455666666655542211  112234566788889999999999988765332   111  12235888999999


Q ss_pred             HccccHHHHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcC------CCHHHHHHHHHHH
Q 004249          347 KNRELYSTALKYYHMLEAN----AGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILE------DNIDARLTLASLL  416 (765)
Q Consensus       347 ~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~  416 (765)
                      .-.|+++.|+++|+..+.+    +.....+...+.+|..|.-..++++|+.++.+-+.+..      ....+++.||..+
T Consensus       246 iflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~  325 (639)
T KOG1130|consen  246 IFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAF  325 (639)
T ss_pred             hhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            9999999999999887654    21233456778999999999999999999998876642      2347888999999


Q ss_pred             HHcCCHHHHHHhcCCCCCc
Q 004249          417 LEDAKDEEAISLLTPPMSL  435 (765)
Q Consensus       417 ~~~g~~~~A~~~~~~~~~~  435 (765)
                      ...|..++|+.+.+..++.
T Consensus       326 ~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  326 NALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HhhhhHHHHHHHHHHHHHH
Confidence            9999999999888766553

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.33  E-value=5.1e-10  Score=110.07  Aligned_cols=153  Identities=16%  Similarity=0.097  Sum_probs=115.2

Q ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004249          122 EELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLAS  201 (765)
Q Consensus       122 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  201 (765)
                      |....+++..+..++..|++++|+..++..+...|+|+..+...+.++...|+..+|.+.+++++..+|..+....++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            56667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHH
Q 004249          202 LYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDR  281 (765)
Q Consensus       202 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~  281 (765)
                      ++...|++.+|+..+.+.+..+|+++..|..|+..|..+|+..+|.                   ...++.+...|++++
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~-------------------~A~AE~~~~~G~~~~  443 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL-------------------LARAEGYALAGRLEQ  443 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH-------------------HHHHHHHHhCCCHHH
Confidence            7777777777777777777777777777777777777777765542                   245556666777777


Q ss_pred             HHHHHHHHHHHh
Q 004249          282 VLKHIELVDLVY  293 (765)
Q Consensus       282 A~~~~~~~~~~~  293 (765)
                      |+..+..+.+..
T Consensus       444 A~~~l~~A~~~~  455 (484)
T COG4783         444 AIIFLMRASQQV  455 (484)
T ss_pred             HHHHHHHHHHhc
Confidence            777777777663

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.33  E-value=6.9e-11  Score=99.80  Aligned_cols=102  Identities=15%  Similarity=0.119  Sum_probs=57.4

Q ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004249          122 EELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLAS  201 (765)
Q Consensus       122 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  201 (765)
                      ++.-+..+.+|..++..|++++|...|+-+...+|.+...|+.||.++..+|++.+|+.+|.+++.++|+++..++.+|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHhCCHHHHHHHHHHHHHhC
Q 004249          202 LYVELGNFQRAADVYRQMVQLC  223 (765)
Q Consensus       202 ~~~~~g~~~~A~~~~~~al~~~  223 (765)
                      ++...|+.+.|...|+.++...
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHh
Confidence            5555555555555555555544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.31  E-value=6e-11  Score=100.14  Aligned_cols=102  Identities=13%  Similarity=0.055  Sum_probs=81.6

Q ss_pred             cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249           88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP  167 (765)
Q Consensus        88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  167 (765)
                      +.....++..|..++..|++++|..+|+-+...+|.++..|+.||.|+..+|++.+|+..|.+++.++|+++..++.+|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            44556667778888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcC
Q 004249          168 WLIEQGDTTWAMSCLSEAVKAD  189 (765)
Q Consensus       168 ~~~~~g~~~~A~~~~~~al~~~  189 (765)
                      |++..|+.+.|...|+.++...
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHh
Confidence            8888888888888888887764

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.31  E-value=2.8e-11  Score=117.74  Aligned_cols=163  Identities=16%  Similarity=0.172  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 004249          230 LKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGI  309 (765)
Q Consensus       230 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~  309 (765)
                      ....|.++...|++++|++.+.+.     .+  .........++...++++.|.+.++.+.+.    +++..-.....+.
T Consensus       105 ~~~~A~i~~~~~~~~~AL~~l~~~-----~~--lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~eD~~l~qLa~aw  173 (290)
T PF04733_consen  105 QLLAATILFHEGDYEEALKLLHKG-----GS--LELLALAVQILLKMNRPDLAEKELKNMQQI----DEDSILTQLAEAW  173 (290)
T ss_dssp             HHHHHHHHCCCCHHHHHHCCCTTT-----TC--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC----SCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHcc-----Cc--ccHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCcHHHHHHHHHH
Confidence            334444455555555555444332     11  113334555555555555555555554443    2333333333333


Q ss_pred             HHHhcC--ChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhcc
Q 004249          310 CHIQLG--NTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKE  387 (765)
Q Consensus       310 ~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  387 (765)
                      +.+..|  .+.+|...|+.+.... +..+.++..++.+.+..|++++|...+.+++..  +|+++.++.+++.+....|+
T Consensus       174 v~l~~g~e~~~~A~y~f~El~~~~-~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk  250 (290)
T PF04733_consen  174 VNLATGGEKYQDAFYIFEELSDKF-GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGK  250 (290)
T ss_dssp             HHHHHTTTCCCHHHHHHHHHHCCS---SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-
T ss_pred             HHHHhCchhHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCC
Confidence            333333  4677777777765443 455666777777777777777777777777766  67777777777777777777


Q ss_pred             H-HHHHHHHHHHHHHcCCCH
Q 004249          388 R-EKSIIYFYKALQILEDNI  406 (765)
Q Consensus       388 ~-~~A~~~~~~al~~~p~~~  406 (765)
                      . +.+.+++.++...+|.++
T Consensus       251 ~~~~~~~~l~qL~~~~p~h~  270 (290)
T PF04733_consen  251 PTEAAERYLSQLKQSNPNHP  270 (290)
T ss_dssp             TCHHHHHHHHHCHHHTTTSH
T ss_pred             ChhHHHHHHHHHHHhCCCCh
Confidence            6 555566666666667654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.30  E-value=2.6e-11  Score=117.95  Aligned_cols=256  Identities=19%  Similarity=0.162  Sum_probs=179.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249          168 WLIEQGDTTWAMSCLSEAVKADP-NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESS  246 (765)
Q Consensus       168 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  246 (765)
                      -++-.|+|..++.-++ ....+| ........+.+++..+|+++..+.-+..   ..+....+...++..+...++-+.+
T Consensus        10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~   85 (290)
T PF04733_consen   10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESA   85 (290)
T ss_dssp             HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred             HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHH
Confidence            3556788888876665 222222 2345566777888888887766544433   2233344555666655554566677


Q ss_pred             HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHh
Q 004249          247 VDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTA  326 (765)
Q Consensus       247 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  326 (765)
                      +..++..+..........+....|.++...|++++|++.+.+.         .+.+.......+++.+++++.|.+.++.
T Consensus        86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---------~~lE~~al~Vqi~L~~~R~dlA~k~l~~  156 (290)
T PF04733_consen   86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG---------GSLELLALAVQILLKMNRPDLAEKELKN  156 (290)
T ss_dssp             HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc---------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7766665543322222224456778888899999999988643         3566677788899999999999999999


Q ss_pred             hcccCCCChHHHHHHHHHHHHccc--cHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC
Q 004249          327 IHWENVSDHAESINEIADLFKNRE--LYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED  404 (765)
Q Consensus       327 ~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  404 (765)
                      +.+.+ .+..-+....+++.+..|  .+.+|.-+|+++...  .+.++..+..++.++..+|++++|...+.+++..+|.
T Consensus       157 ~~~~~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~  233 (290)
T PF04733_consen  157 MQQID-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN  233 (290)
T ss_dssp             HHCCS-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred             HHhcC-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence            86544 555555555556655555  699999999998776  6788999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCH-HHHHHhcCCCCCccccc
Q 004249          405 NIDARLTLASLLLEDAKD-EEAISLLTPPMSLENKY  439 (765)
Q Consensus       405 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~  439 (765)
                      ++++..+++.+....|+. +.+.+++.+....+|..
T Consensus       234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence            999999999999999998 66777888888777765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.29  E-value=4.2e-11  Score=110.35  Aligned_cols=119  Identities=18%  Similarity=0.117  Sum_probs=103.1

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE  205 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  205 (765)
                      +-+..-|.-+.+.++|.+|+..|.+|++++|.++..|.+.+.+|.++|.++.|++-++.++.++|....+|..||.+|..
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~  161 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA  161 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence            34556677888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004249          206 LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE  244 (765)
Q Consensus       206 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  244 (765)
                      +|++.+|++.|++++.++|++...+..|..+-...+...
T Consensus       162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999887777777666666555

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.29  E-value=1.6e-08  Score=104.79  Aligned_cols=172  Identities=17%  Similarity=0.136  Sum_probs=121.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH
Q 004249           96 GDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDT  175 (765)
Q Consensus        96 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~  175 (765)
                      .-|......|-.++|..+|.+.-+.+        .+-..|...|.+++|.+..+.--.+  .-...+++.|..+...++.
T Consensus       805 kvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di  874 (1416)
T KOG3617|consen  805 KVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDI  874 (1416)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccH
Confidence            34566778888999999988875543        5667788888888888776532211  1235677888888888888


Q ss_pred             HHHHHHHHHHH----------hcCC----------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004249          176 TWAMSCLSEAV----------KADP----------NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAK  235 (765)
Q Consensus       176 ~~A~~~~~~al----------~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  235 (765)
                      +.|+++|+++-          ..+|          .++..|...|..+...|+.+.|+.+|..+-.        |+.+..
T Consensus       875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~Vr  946 (1416)
T KOG3617|consen  875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVR  946 (1416)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhhee
Confidence            88888888752          2233          2345667778888888888888888887643        566677


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          236 LYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       236 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                      +.+-+|+.++|-.+.++.     .+..  +.+.+|+.|...|++.+|+.+|.++...
T Consensus       947 I~C~qGk~~kAa~iA~es-----gd~A--AcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  947 IKCIQGKTDKAARIAEES-----GDKA--ACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             eEeeccCchHHHHHHHhc-----ccHH--HHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            777777777776655442     2222  6778899999999999998888876543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.25  E-value=2.9e-09  Score=104.89  Aligned_cols=127  Identities=17%  Similarity=0.148  Sum_probs=76.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004249          156 QKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAK  235 (765)
Q Consensus       156 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  235 (765)
                      |....+++..+..++..|++++|+..+...+...|+|+..+...+.++...++..+|.+.+++++...|..+....++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            45555566666666666666666666666666666666666666666666666666666666666666666555666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 004249          236 LYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLK  284 (765)
Q Consensus       236 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~  284 (765)
                      .|.+.|++.+|+..++..+..+|+++.  .|..+++.|..+|+..+|..
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~--~w~~LAqay~~~g~~~~a~~  429 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPN--GWDLLAQAYAELGNRAEALL  429 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCch--HHHHHHHHHHHhCchHHHHH
Confidence            666666666666666666666666555  45566666666555544443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.24  E-value=2e-09  Score=102.29  Aligned_cols=183  Identities=15%  Similarity=0.050  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchH---HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH---HHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNS---YHILGLVHDALGNTAKAMGCYWLAACYKQKDS---SLWK  163 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~  163 (765)
                      .....+..|..++..|+|++|+..|++++...|..+.+   .+.+|.++++.+++++|+..+++.++..|+++   .+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            44557788899999999999999999999999988744   48899999999999999999999999988765   6778


Q ss_pred             HHHHHHHHcC---------------C---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 004249          164 LIFPWLIEQG---------------D---TTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE  225 (765)
Q Consensus       164 ~la~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  225 (765)
                      .+|.++...+               +   ..+|+..|++.+...|+..-+              .+|...+..+-.   .
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~---~  173 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKD---R  173 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHH---H
Confidence            8887764443               1   246778888888888876431              111111111100   0


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249          226 NIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-FGVIDLLASMLVQMNAYDRVLKHIELV  289 (765)
Q Consensus       226 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~  289 (765)
                      -..--+..|..|.+.|.+..|+.-++.+++..|+.+. ..++..++..|...|..++|..+....
T Consensus       174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            1112245677777778888888888888877777654 335667777777778777777766543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.23  E-value=2.1e-10  Score=116.36  Aligned_cols=113  Identities=12%  Similarity=0.066  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 004249           94 MLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG  173 (765)
Q Consensus        94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  173 (765)
                      +..+|..++..|+|++|+..|.+++..+|+++.+++.+|.++..+|++++|+..+++++.++|.++.+++.+|.++..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            56677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 004249          174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL  206 (765)
Q Consensus       174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  206 (765)
                      ++++|+..|++++.++|+++.+...++.+....
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            888888888888888888887777776665544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=99.20  E-value=2e-06  Score=91.15  Aligned_cols=227  Identities=14%  Similarity=0.070  Sum_probs=164.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004249          101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMS  180 (765)
Q Consensus       101 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~  180 (765)
                      ....+++..|+....+.++..|+...+...-|.++.++|+.++|..+++..-...+++...+..+-.+|..+|++++|..
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            56789999999999999999999999999999999999999999988887777778888888999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH---------HHHHHH
Q 004249          181 CLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK-SGQIE---------SSVDIL  250 (765)
Q Consensus       181 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~---------~A~~~~  250 (765)
                      +|++++..+|. .+....+-.+|.+.+.|.+-.+.--+.-+..|+++..+.....++.+ ....+         -|...+
T Consensus        99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~  177 (932)
T KOG2053|consen   99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV  177 (932)
T ss_pred             HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence            99999999998 88888999999999999887777777777889887655544444443 22222         234445


Q ss_pred             HHHHhcC-CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcc
Q 004249          251 EDYLKGH-PTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHW  329 (765)
Q Consensus       251 ~~~~~~~-p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  329 (765)
                      ++.++.. +-.... -....-.++..+|.+++|.+++..-+...  ..+.+..........+...+++.+-.++..+++.
T Consensus       178 ~~~l~~~gk~~s~a-E~~Lyl~iL~~~~k~~eal~~l~~~la~~--l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~  254 (932)
T KOG2053|consen  178 QKLLEKKGKIESEA-EIILYLLILELQGKYQEALEFLAITLAEK--LTSANLYLENKKLDLLKLLNRWQELFELSSRLLE  254 (932)
T ss_pred             HHHhccCCccchHH-HHHHHHHHHHhcccHHHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            5555544 211111 12244455666777888888774322220  0222333333444556666777776666666665


Q ss_pred             cC
Q 004249          330 EN  331 (765)
Q Consensus       330 ~~  331 (765)
                      ..
T Consensus       255 k~  256 (932)
T KOG2053|consen  255 KG  256 (932)
T ss_pred             hC
Confidence            54

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.20  E-value=1.5e-09  Score=100.82  Aligned_cols=175  Identities=17%  Similarity=0.143  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH---HHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS---SLWK  163 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~  163 (765)
                      +...++..|..++..|+|.+|+..|++++...|.++   .+.+.+|.+++..|+++.|+..+++.+...|+++   .+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            345678899999999999999999999999988765   7889999999999999999999999999888765   6778


Q ss_pred             HHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004249          164 LIFPWLIEQG-----------DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKM  232 (765)
Q Consensus       164 ~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  232 (765)
                      .+|.+++...           ...+|+..|+..+...|++..+-              +|...+..+-.   .-..--+.
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~~e~~  146 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAEHELY  146 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHHHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHHHHHH
Confidence            8888765542           23467777777777777654221              00000000000   00111234


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHhccHHH
Q 004249          233 GAKLYQKSGQIESSVDILEDYLKGHPTEAD-FGVIDLLASMLVQMNAYDR  281 (765)
Q Consensus       233 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~  281 (765)
                      +|..|.+.|.+..|+..++.+++..|+... ..++..++..+..+|..+.
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~  196 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA  196 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence            556666666666666666666666665543 1244556666666665553

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.18  E-value=6.1e-07  Score=93.44  Aligned_cols=369  Identities=17%  Similarity=0.161  Sum_probs=200.3

Q ss_pred             HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHH------------HHHHhcCCCCHHHHHHHHHHHH
Q 004249          137 ALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCL------------SEAVKADPNDFKLKFHLASLYV  204 (765)
Q Consensus       137 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~------------~~al~~~p~~~~~~~~la~~~~  204 (765)
                      ..|+.+.|.+.++-.     ....+|-++|....+..+.+-|.-++            +++.+ +|+  +.-...+.+..
T Consensus       740 tiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLAi  811 (1416)
T KOG3617|consen  740 TIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLAI  811 (1416)
T ss_pred             EeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHHH
Confidence            345556555544432     23445666666555555555444433            22222 222  22223445556


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 004249          205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLK  284 (765)
Q Consensus       205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~  284 (765)
                      .+|..++|...|++.-+        +-.+-.+|...|.+++|.++.+.--++.-.+    .|++.+..+...++.+.|++
T Consensus       812 eLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~----Tyy~yA~~Lear~Di~~Ale  879 (1416)
T KOG3617|consen  812 ELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRN----TYYNYAKYLEARRDIEAALE  879 (1416)
T ss_pred             HHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceehhh----hHHHHHHHHHhhccHHHHHH
Confidence            66666667666666543        2234455666666666666554322222111    35566666666666666666


Q ss_pred             HHHHHHH----------HhcC------CCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHc
Q 004249          285 HIELVDL----------VYYS------GKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKN  348 (765)
Q Consensus       285 ~~~~~~~----------~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~  348 (765)
                      +|+++-.          .+++      ........+...|..+...|+.+.|+.+|..+         .-|+.+..+.+-
T Consensus       880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A---------~D~fs~VrI~C~  950 (1416)
T KOG3617|consen  880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA---------KDYFSMVRIKCI  950 (1416)
T ss_pred             HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh---------hhhhhheeeEee
Confidence            6665311          0000      01122345666677777788888888888765         225566677777


Q ss_pred             cccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHcC--
Q 004249          349 RELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL------EDNIDARLTLASLLLEDA--  420 (765)
Q Consensus       349 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g--  420 (765)
                      +|+.++|-.+-+       ...+-.+.+.+|+.|...|++.+|+..|.++....      .++ +..-.|+.+....|  
T Consensus       951 qGk~~kAa~iA~-------esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~d~L~nlal~s~~~ 1022 (1416)
T KOG3617|consen  951 QGKTDKAARIAE-------ESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMKDRLANLALMSGGS 1022 (1416)
T ss_pred             ccCchHHHHHHH-------hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHhhcCch
Confidence            888888876654       34455777888999999999999998888775431      111 11112222222222  


Q ss_pred             CHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhh-hccc-ccccChhhHHHHH
Q 004249          421 KDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCE-SSHQ-EETFNHEEHRLLI  498 (765)
Q Consensus       421 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~l-~~~~~~~~~~~~~  498 (765)
                      +.-.|..+|+..-.                   -...-..+|.+.|.+.+|++.....-+- .+.| .+-+....++.++
T Consensus      1023 d~v~aArYyEe~g~-------------------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll 1083 (1416)
T KOG3617|consen 1023 DLVSAARYYEELGG-------------------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLL 1083 (1416)
T ss_pred             hHHHHHHHHHHcch-------------------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHH
Confidence            23334444443221                   1122334566677777777654432110 0000 0011233467778


Q ss_pred             HHHHHHHHhhhcHHHHHHHHH------HHHHhccC------------------CCCch---HHHHHHHHhhcccccCChh
Q 004249          499 IDLCKTLASLHRYEDAIKIIN------LILKLGYG------------------KFPVE---KEELYFLGAQIPCNTTDPK  551 (765)
Q Consensus       499 ~~l~~~~~~~~~~~~A~~~~~------~al~~~~~------------------~~~~~---~~~~~~~~~~~~~~~g~~~  551 (765)
                      .+-+..+....+|++|..++-      .|++++..                  +.|+.   ...+..++ .++.++|.|.
T Consensus      1084 ~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqva-e~c~qQG~Yh 1162 (1416)
T KOG3617|consen 1084 RRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVA-ELCLQQGAYH 1162 (1416)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHH-HHHHhccchH
Confidence            888888888888888886653      34443321                  11111   22344444 4889999999


Q ss_pred             hHHHHHHHHHH
Q 004249          552 LWFDGVRFMVK  562 (765)
Q Consensus       552 ~A~~~~~~~l~  562 (765)
                      .|-.-|.++-.
T Consensus      1163 ~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1163 AATKKFTQAGD 1173 (1416)
T ss_pred             HHHHHHhhhhh
Confidence            88888877643

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.16  E-value=7.8e-09  Score=98.27  Aligned_cols=185  Identities=13%  Similarity=0.022  Sum_probs=133.2

Q ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHH
Q 004249          124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSL---WKLIFPWLIEQGDTTWAMSCLSEAVKADPND---FKLKF  197 (765)
Q Consensus       124 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~  197 (765)
                      ++..++..|..++..|++++|+..|++++...|..+.+   .+.+|.++.+.+++++|+..+++.++.+|++   +.+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            45667778888888888888888888888888877644   3778888888888888888888888887765   35677


Q ss_pred             HHHHHHHHhC---------------C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249          198 HLASLYVELG---------------N---FQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPT  259 (765)
Q Consensus       198 ~la~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  259 (765)
                      .+|.++...+               +   ..+|+..|++.++..|++..+-...-           -+..++..+..   
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~-----------rl~~l~~~la~---  176 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATK-----------RLVFLKDRLAK---  176 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHH-----------HHHHHHHHHHH---
Confidence            7777654433               1   24567777777877777643211000           00111111110   


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhc
Q 004249          260 EADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIH  328 (765)
Q Consensus       260 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  328 (765)
                           --...|..|.+.|.|..|+.-++.+++.++. .+...++...++.++..+|..++|......+.
T Consensus       177 -----~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~-t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        177 -----YELSVAEYYTKRGAYVAVVNRVEQMLRDYPD-TQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             -----HHHHHHHHHHHcCchHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence                 2238899999999999999999999999664 56788999999999999999999998877653

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.15  E-value=1e-09  Score=111.40  Aligned_cols=113  Identities=18%  Similarity=0.095  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 004249          128 YHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG  207 (765)
Q Consensus       128 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  207 (765)
                      +...|..++..|++++|+..|.++++++|+++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.++...|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            44567777777888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004249          208 NFQRAADVYRQMVQLCPENIEALKMGAKLYQKS  240 (765)
Q Consensus       208 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  240 (765)
                      ++++|+..|++++.++|++..+...++.+....
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            888888888888888888877776666654443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=99.12  E-value=9.3e-06  Score=86.28  Aligned_cols=239  Identities=15%  Similarity=0.091  Sum_probs=159.9

Q ss_pred             HHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 004249          136 DALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADV  215 (765)
Q Consensus       136 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  215 (765)
                      ...+++.+|+....+.++..|+...+...-|.++.++|+.++|..+++..-...+++...+..+-.+|..+|++++|..+
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence            35678999999999999999999988888899999999999999888877777778888888899999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Q 004249          216 YRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYS  295 (765)
Q Consensus       216 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  295 (765)
                      |++++..+|+ ...+..+-.+|.+.+.|.+-.+.--+..+..|..+-. .|..+..+.......+....           
T Consensus       100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yy-fWsV~Slilqs~~~~~~~~~-----------  166 (932)
T KOG2053|consen  100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYY-FWSVISLILQSIFSENELLD-----------  166 (932)
T ss_pred             HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch-HHHHHHHHHHhccCCccccc-----------
Confidence            9999999998 7778888888888888877666666666677777642 34444433333322222221           


Q ss_pred             CCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC-CCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHH
Q 004249          296 GKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN-VSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCL  374 (765)
Q Consensus       296 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  374 (765)
                            .....+            |....++.+... .-....-....-.++...|.+++|...+..-+.....+.+...
T Consensus       167 ------~i~l~L------------A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l  228 (932)
T KOG2053|consen  167 ------PILLAL------------AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYL  228 (932)
T ss_pred             ------chhHHH------------HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHH
Confidence                  011111            222333333222 1111111111123445667788888877432222113444444


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHcCCC
Q 004249          375 HLKIAECSLALKEREKSIIYFYKALQILEDN  405 (765)
Q Consensus       375 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  405 (765)
                      -..-...+...+++.+-.+...+++..++++
T Consensus       229 ~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  229 ENKKLDLLKLLNRWQELFELSSRLLEKGNDD  259 (932)
T ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence            4555677777788888888888888877776

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=2.4e-09  Score=99.94  Aligned_cols=123  Identities=17%  Similarity=0.141  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC---CHHHHHHHHH
Q 004249          141 TAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG---NFQRAADVYR  217 (765)
Q Consensus       141 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~  217 (765)
                      .+.-+.-++.-+..+|++.+.|..||.+|+.+|++..|...|.+++++.|++++.+..+|.++..+.   ...++...|+
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            4555666677777888888888888888888888888888888888888888888888888776543   3567888888


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH
Q 004249          218 QMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADF  263 (765)
Q Consensus       218 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  263 (765)
                      +++..+|.++.+.+.+|..++..|++.+|+..++.+++..|.+...
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r  263 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR  263 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence            8888888888888888888888888888888888888887777653

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.09  E-value=2.8e-05  Score=80.41  Aligned_cols=135  Identities=17%  Similarity=0.206  Sum_probs=67.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q 004249          132 GLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQR  211 (765)
Q Consensus       132 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  211 (765)
                      |.-+...|+++.|+..|-.+-.        ...-.........+.+|+..++...... .....|-.++.-|...|+|+.
T Consensus       713 g~hl~~~~q~daainhfiea~~--------~~kaieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~  783 (1636)
T KOG3616|consen  713 GDHLEQIGQLDAAINHFIEANC--------LIKAIEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEI  783 (1636)
T ss_pred             hHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHH
Confidence            4444455555555555543311        1111222333445555555554433221 112234456677777777777


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 004249          212 AADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHI  286 (765)
Q Consensus       212 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~  286 (765)
                      |.+.|.++-        ........|-+.|+|++|.++-+++..  |.... ..|...+.-+-..|+|.+|.++|
T Consensus       784 ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~-~~yiakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  784 AEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATI-SLYIAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             HHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHH-HHHHHhHHhHHhhcchhhhhhee
Confidence            777776652        122334566677777777776666532  33221 13444555555555555555443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=7.8e-09  Score=96.57  Aligned_cols=120  Identities=23%  Similarity=0.260  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 004249          107 YEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG---DTTWAMSCLS  183 (765)
Q Consensus       107 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~  183 (765)
                      .+.-+.-++.-+..+|++++.|..||.+|+.+|++..|...|.+++++.|++++.+..+|.+++...   ...++...++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            3444444455555555555555555555555555555555555555555555555555555544332   2344555555


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 004249          184 EAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN  226 (765)
Q Consensus       184 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  226 (765)
                      +++..+|.++.+.+.+|..+++.|+|.+|+..++.++...|.+
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            5555555555555555555555555555555555555555444

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.07  E-value=2.1e-05  Score=77.59  Aligned_cols=448  Identities=14%  Similarity=0.058  Sum_probs=280.2

Q ss_pred             HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhCCCc---hHHHHHHHHH-HHcCCHHHHHHHHHHHhccC---CCC-
Q 004249           89 PEIRRMLGDASLHYALG--RYEEAISVLHEVIRLEEELP---NSYHILGLVH-DALGNTAKAMGCYWLAACYK---QKD-  158 (765)
Q Consensus        89 ~~~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~---p~~-  158 (765)
                      .-...+++.|..+...|  +...++.+++..+...|.+.   ..+..+|.++ ....+++.|...++++..+.   |.. 
T Consensus         5 Ava~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy   84 (629)
T KOG2300|consen    5 AVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY   84 (629)
T ss_pred             HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH
Confidence            34557789999888899  89999999999988877653   5667777754 46789999999999997654   332 


Q ss_pred             ---HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---
Q 004249          159 ---SSLWKLIFPWLIEQG-DTTWAMSCLSEAVKADPNDF----KLKFHLASLYVELGNFQRAADVYRQMVQLCPENI---  227 (765)
Q Consensus       159 ---~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---  227 (765)
                         ..+...|+.+|.... .+..|...+.+++++....+    ...+.++.+..-..++..|++.+.-.......-.   
T Consensus        85 dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~y  164 (629)
T KOG2300|consen   85 DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPY  164 (629)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHH
Confidence               255667899988877 78899999999999866554    4568899999999999999998544332211111   


Q ss_pred             -HHHHH--HHHHHHHcCCH---HHHHHHHHHHHhcCCCCCC----HHHH-HHH-HHHHHHhccHHHHHHHHHHHHHHhc-
Q 004249          228 -EALKM--GAKLYQKSGQI---ESSVDILEDYLKGHPTEAD----FGVI-DLL-ASMLVQMNAYDRVLKHIELVDLVYY-  294 (765)
Q Consensus       228 -~~~~~--la~~~~~~g~~---~~A~~~~~~~~~~~p~~~~----~~~~-~~l-~~~~~~~~~~~~A~~~~~~~~~~~~-  294 (765)
                       .+.+.  .+.++....+.   ..+.....++.+....++.    ..++ ..+ ...|...|+...+...+++...... 
T Consensus       165 lr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqt  244 (629)
T KOG2300|consen  165 LRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQT  244 (629)
T ss_pred             HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhc
Confidence             12222  23333333333   3444444445544333322    1111 122 2234455777766666665543321 


Q ss_pred             --C------------CCCccH--------HHHHHHHH--HHHhcCChhHHHHHHHhhcccC---C--CChH--------H
Q 004249          295 --S------------GKELLL--------ALKIKAGI--CHIQLGNTDKAEILLTAIHWEN---V--SDHA--------E  337 (765)
Q Consensus       295 --~------------~~~~~~--------~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~---~--~~~~--------~  337 (765)
                        .            +.+...        .+...+..  --...|-+++|.++-++++...   +  +...        .
T Consensus       245 ist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~  324 (629)
T KOG2300|consen  245 ISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMI  324 (629)
T ss_pred             cCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence              1            000000        01111111  1123456677777666655221   0  1111        2


Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHhccC-CCC-------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC-CH--
Q 004249          338 SINEIADLFKNRELYSTALKYYHMLEANAG-VHN-------DGCLHLKIAECSLALKEREKSIIYFYKALQILED-NI--  406 (765)
Q Consensus       338 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~--  406 (765)
                      .+..++.+-.-.|++.+|++....+.+... .|.       .+.+++.+|......+.++.|...|..+.+.-.. +.  
T Consensus       325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a  404 (629)
T KOG2300|consen  325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQA  404 (629)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHH
Confidence            334455666778999999998877765421 233       3467778888888889999999999999987432 22  


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccc
Q 004249          407 DARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQE  486 (765)
Q Consensus       407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~  486 (765)
                      -+...+|.+|.+.|+-+.-.+.++..-..+..+     .........+++..|...+.++++.+|...+.+.++..    
T Consensus       405 ~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s-----~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma----  475 (629)
T KOG2300|consen  405 FCNLNLAISYLRIGDAEDLYKALDLIGPLNTNS-----LSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA----  475 (629)
T ss_pred             HHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCc-----chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc----
Confidence            234558999999998777666665443322111     11223345778888999999999999999888887633    


Q ss_pred             cccChhh----HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHH--HHhhcccccCC
Q 004249          487 ETFNHEE----HRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYF--LGAQIPCNTTD  549 (765)
Q Consensus       487 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~~~~~~g~  549 (765)
                         ...+    ..-.+.-++.+....|+..++.+..+-++.+..+. |+.+..++.  +..+++...|+
T Consensus       476 ---naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi-~Di~vqLws~si~~~L~~a~g~  540 (629)
T KOG2300|consen  476 ---NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI-PDIPVQLWSSSILTDLYQALGE  540 (629)
T ss_pred             ---chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC-CCchHHHHHHHHHHHHHHHhCc
Confidence               1111    12344567777888999999999999998887542 444444443  22334444554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.06  E-value=6.3e-08  Score=90.05  Aligned_cols=175  Identities=17%  Similarity=0.219  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHH
Q 004249          193 FKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN---IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-FGVIDL  268 (765)
Q Consensus       193 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~  268 (765)
                      +..++..|..++..|++.+|+..|++++...|..   +.+.+.+|.+++..|++++|+..+++.++..|+++. ..+++.
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~   84 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM   84 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence            4556666666666666666666666666666654   455666666666666666666666666666666654 234455


Q ss_pred             HHHHHHHh-----------ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHH
Q 004249          269 LASMLVQM-----------NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAE  337 (765)
Q Consensus       269 l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  337 (765)
                      +|.+++..           +...+|+..|+..+..+|. ++....+...+..                 +.    ..-..
T Consensus        85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~-S~y~~~A~~~l~~-----------------l~----~~la~  142 (203)
T PF13525_consen   85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN-SEYAEEAKKRLAE-----------------LR----NRLAE  142 (203)
T ss_dssp             HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT-STTHHHHHHHHHH-----------------HH----HHHHH
T ss_pred             HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC-chHHHHHHHHHHH-----------------HH----HHHHH
Confidence            55554443           3345777777777777442 1222222222211                 11    11123


Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCH---HHHHHHHHHHHHhccHHHH
Q 004249          338 SINEIADLFKNRELYSTALKYYHMLEANAGVHNDG---CLHLKIAECSLALKEREKS  391 (765)
Q Consensus       338 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A  391 (765)
                      --+.+|..|.+.|.+..|+..++.+++.  .|+.+   +++..++.+|..+|..+.|
T Consensus       143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  143 HELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            3445677777777777777777777776  56553   4667777777777776644

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.06  E-value=1e-08  Score=89.85  Aligned_cols=129  Identities=13%  Similarity=0.105  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEEL---PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKL  164 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~  164 (765)
                      ....+..+...+..++...+...++.++...|+.   ..+.+.+|.+++..|++++|...|+.++...|+.   +.+.+.
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~   90 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            3445566666667888888888888888888877   3667778888888888888888888888766554   346677


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004249          165 IFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMV  220 (765)
Q Consensus       165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  220 (765)
                      ++.++...|++++|+..++. +...+..+.++..+|.++...|++++|+..|++++
T Consensus        91 LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            88888888888888888865 33344456677788888888888888888887763

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.04  E-value=5.6e-09  Score=88.63  Aligned_cols=96  Identities=24%  Similarity=0.221  Sum_probs=38.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHH
Q 004249           96 GDASLHYALGRYEEAISVLHEVIRLEEEL---PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWL  169 (765)
Q Consensus        96 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~  169 (765)
                      ..|..+...|++++|+..|.+++..+|++   +.+++.+|.++...|++++|+..|++++...|++   +.++..+|.++
T Consensus         7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~   86 (119)
T TIGR02795         7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL   86 (119)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence            33344444444444444444444433332   2233334444444444444444444444333332   23333344444


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCC
Q 004249          170 IEQGDTTWAMSCLSEAVKADPN  191 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~~p~  191 (765)
                      ...|++++|+..+++++...|+
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~p~  108 (119)
T TIGR02795        87 QELGDKEKAKATLQQVIKRYPG  108 (119)
T ss_pred             HHhCChHHHHHHHHHHHHHCcC
Confidence            4444444444444444444333

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.03  E-value=4.6e-09  Score=89.20  Aligned_cols=107  Identities=19%  Similarity=0.136  Sum_probs=98.3

Q ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHH
Q 004249          125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND---FKLKFH  198 (765)
Q Consensus       125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~  198 (765)
                      ++.++.+|..+...|++++|+..|.+++...|++   +.+++.+|.++...|++++|+..|++++...|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4678999999999999999999999999988876   5788999999999999999999999999988875   678999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004249          199 LASLYVELGNFQRAADVYRQMVQLCPENIEALK  231 (765)
Q Consensus       199 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  231 (765)
                      +|.++...|++++|+..+.+++...|++..+..
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            999999999999999999999999999876544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.03  E-value=1.3e-08  Score=107.41  Aligned_cols=145  Identities=12%  Similarity=-0.082  Sum_probs=112.4

Q ss_pred             HHhhCCCchHH--HHHHHHHHHcCC---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q 004249          118 IRLEEELPNSY--HILGLVHDALGN---TAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG--------DTTWAMSCLSE  184 (765)
Q Consensus       118 l~~~p~~~~~~--~~l~~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~  184 (765)
                      ....|.++.+|  +..|..+...++   ...|+.+|+++++++|++..++..++.++....        +...+.....+
T Consensus       330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            34556666544  455666655544   678888888888888888888887777665432        23456666666


Q ss_pred             HHhc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249          185 AVKA--DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD  262 (765)
Q Consensus       185 al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  262 (765)
                      ++..  +|.++.++..+|..+...|++++|...+++++.++| +..++..+|.++...|++++|+..|++++.++|.++.
T Consensus       410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            6654  677788888888888889999999999999999998 5788999999999999999999999999999999886


Q ss_pred             H
Q 004249          263 F  263 (765)
Q Consensus       263 ~  263 (765)
                      +
T Consensus       489 ~  489 (517)
T PRK10153        489 L  489 (517)
T ss_pred             H
Confidence            4

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.02  E-value=1.3e-07  Score=89.16  Aligned_cols=308  Identities=14%  Similarity=0.094  Sum_probs=169.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249           94 MLGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI  170 (765)
Q Consensus        94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  170 (765)
                      .+..|..++...++++|+..+.+.+..-.+..   ..+-.+..+...+|.|++++.+--..+...               
T Consensus         9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a---------------   73 (518)
T KOG1941|consen    9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTA---------------   73 (518)
T ss_pred             HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH---------------
Confidence            34556666666677777766666665432222   222233344455555555544433222211               


Q ss_pred             HcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCH
Q 004249          171 EQGDTTWAMSCLSEAVKADPN--DFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN-----IEALKMGAKLYQKSGQI  243 (765)
Q Consensus       171 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~  243 (765)
                                     .+....  ..+++.+++..+....++.+++.+-...+.+-...     ..+...++..+..++.+
T Consensus        74 ---------------~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~f  138 (518)
T KOG1941|consen   74 ---------------RELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVF  138 (518)
T ss_pred             ---------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHH
Confidence                           111000  12344455555555555555555544444432111     13344456666666666


Q ss_pred             HHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCc------cHHHHHHHHHHHHh
Q 004249          244 ESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKEL------LLALKIKAGICHIQ  313 (765)
Q Consensus       244 ~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~  313 (765)
                      +++++.|+.+++....+.+    ..++..+|.++.+..++++|+-+..++..+...-.-.      ...+.+.++..+..
T Consensus       139 q~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~  218 (518)
T KOG1941|consen  139 QKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRL  218 (518)
T ss_pred             HHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHH
Confidence            6666666666654333222    3345566677777777777776666666553211111      12234556666777


Q ss_pred             cCChhHHHHHHHhhcc-----cCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCC----CCHHHHHHHHHHHHH
Q 004249          314 LGNTDKAEILLTAIHW-----ENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVH----NDGCLHLKIAECSLA  384 (765)
Q Consensus       314 ~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~la~~~~~  384 (765)
                      +|..-.|.++.+++.+     .+.+........+|++|...|+.+.|..-|+.+......-    ....++...+.++..
T Consensus       219 ~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~  298 (518)
T KOG1941|consen  219 LGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLET  298 (518)
T ss_pred             hcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            7777777777666432     2234445667778888888888888888888876552111    223556666777666


Q ss_pred             hccHHH-----HHHHHHHHHHHcCCC------HHHHHHHHHHHHHcCCHHHHHHhcCC
Q 004249          385 LKEREK-----SIIYFYKALQILEDN------IDARLTLASLLLEDAKDEEAISLLTP  431 (765)
Q Consensus       385 ~g~~~~-----A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~  431 (765)
                      ..-..+     |++.-++++++...-      ...+..++.+|...|.-++-...+..
T Consensus       299 ~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r  356 (518)
T KOG1941|consen  299 LRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR  356 (518)
T ss_pred             HHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            555444     777777777764321      24667788999888877765555443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.02  E-value=1.2e-07  Score=89.30  Aligned_cols=243  Identities=15%  Similarity=0.109  Sum_probs=120.1

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----HH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKD-----SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPN--D----FK  194 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~  194 (765)
                      +++..++..+...-++.+++.+-.-.+.+-...     ..+...++.++..++.++++++.|++++....+  +    ..
T Consensus        84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq  163 (518)
T KOG1941|consen   84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ  163 (518)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence            455556666666666666666555555442111     134444566666666666666666666554221  1    13


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC--
Q 004249          195 LKFHLASLYVELGNFQRAADVYRQMVQLCPEN----------IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD--  262 (765)
Q Consensus       195 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~--  262 (765)
                      ++..+|..+....++++|+.+..++.++....          .-+++.++..+...|..-.|.++.+++.++.-...+  
T Consensus       164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra  243 (518)
T KOG1941|consen  164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA  243 (518)
T ss_pred             hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence            45556666666666666666655555543211          123445555555555555555555555443211111  


Q ss_pred             --HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHH
Q 004249          263 --FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESIN  340 (765)
Q Consensus       263 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  340 (765)
                        .+.+..+|.+|...|+.+.|..-|+++.....       .+--.+|.                          ..++.
T Consensus       244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~-------~~gdrmgq--------------------------v~al~  290 (518)
T KOG1941|consen  244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA-------SLGDRMGQ--------------------------VEALD  290 (518)
T ss_pred             HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh-------hhhhhHHH--------------------------HHHHH
Confidence              22233455555555555555555555544310       00011111                          22333


Q ss_pred             HHHHHHHccccH-----HHHHHHHHHHHhccC----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          341 EIADLFKNRELY-----STALKYYHMLEANAG----VHNDGCLHLKIAECSLALKEREKSIIYFYKALQI  401 (765)
Q Consensus       341 ~la~~~~~~g~~-----~~A~~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  401 (765)
                      ..+.++....-.     =.|++.-++++++..    ...-...+..++.+|...|.-++-...+.++-+.
T Consensus       291 g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~  360 (518)
T KOG1941|consen  291 GAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC  360 (518)
T ss_pred             HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            333333222211     236666666555421    1112356788899998888877777766665443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.99  E-value=1.7e-07  Score=103.19  Aligned_cols=240  Identities=11%  Similarity=0.082  Sum_probs=192.2

Q ss_pred             CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC----HHHHHHHHHHHHHhCCHHHHH
Q 004249          139 GNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA-DPND----FKLKFHLASLYVELGNFQRAA  213 (765)
Q Consensus       139 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~  213 (765)
                      ++-.+..+.|++.+..+|+....|........+.++.+.|.+.+++|+.. ++..    ...|..+-++...-|.-+.-.
T Consensus      1438 ~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1438 SRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred             ccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence            33445667788888889999999999888889999999999999999875 3322    345666666666667777888


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Q 004249          214 DVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVY  293 (765)
Q Consensus       214 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  293 (765)
                      +.|++|.+.+ +.-.++..|..+|...+++++|.++++.+++...+...  +|..++..++++++-+.|...+.++++..
T Consensus      1518 kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~--vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1518 KVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRK--VWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred             HHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhh--HHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence            8999988764 33467888999999999999999999999998875544  78899999999999999999999999985


Q ss_pred             cCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHH
Q 004249          294 YSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGC  373 (765)
Q Consensus       294 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  373 (765)
                      |.  ..........+...++.|+.+.+..+|+..+..+ |...+.|..+.+.-.+.|+.+.+..+|++++.+...|....
T Consensus      1595 Pk--~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1595 PK--QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred             ch--hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence            53  3466777788888999999999999999998877 77889999999999999999999999999998865566655


Q ss_pred             HHHHHHHHHHH
Q 004249          374 LHLKIAECSLA  384 (765)
Q Consensus       374 ~~~~la~~~~~  384 (765)
                      .++..=.-|.+
T Consensus      1672 fffKkwLeyEk 1682 (1710)
T KOG1070|consen 1672 FFFKKWLEYEK 1682 (1710)
T ss_pred             HHHHHHHHHHH
Confidence            55544333333

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.99  E-value=3.1e-08  Score=86.41  Aligned_cols=127  Identities=15%  Similarity=0.094  Sum_probs=101.5

Q ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249          125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV  204 (765)
Q Consensus       125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  204 (765)
                      +..++..|..|-..|-+.-|.-.|.+++.+.|+.+.++..+|..+...|+++.|.+.|...++++|...-++.+.|..+.
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence            35667778888888989999999999999999999999999999999999999999999999999998888999999888


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249          205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILED  252 (765)
Q Consensus       205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  252 (765)
                      --|++.-|.+.+.+-.+.+|++|---..+ .+-...-++.+|...+.+
T Consensus       145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWL-Yl~E~k~dP~~A~tnL~q  191 (297)
T COG4785         145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWL-YLNEQKLDPKQAKTNLKQ  191 (297)
T ss_pred             ecCchHhhHHHHHHHHhcCCCChHHHHHH-HHHHhhCCHHHHHHHHHH
Confidence            89999999999988888888887422211 112234456666655443

>PRK11906 transcriptional regulator; Provisional

Probab=98.97  E-value=5.9e-08  Score=96.58  Aligned_cols=120  Identities=12%  Similarity=0.017  Sum_probs=63.5

Q ss_pred             HHHHHHHHHh---ccCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHH
Q 004249          143 KAMGCYWLAA---CYKQKDSSLWKLIFPWLIEQ---------GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQ  210 (765)
Q Consensus       143 ~A~~~~~~a~---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  210 (765)
                      .|+.+|.+++   .++|....++..++.++...         ....+|....+++++++|.|+.++..+|.+....++++
T Consensus       276 ~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~  355 (458)
T PRK11906        276 RAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAK  355 (458)
T ss_pred             HHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchh
Confidence            3444455555   44444444444444444332         12334555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249          211 RAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD  262 (765)
Q Consensus       211 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  262 (765)
                      .|...|++++.++|+.+.+++..|.+....|+.++|+..++++++++|....
T Consensus       356 ~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~  407 (458)
T PRK11906        356 VSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK  407 (458)
T ss_pred             hHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence            5555555555555555555555555555555555555555555555555444

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.97  E-value=1.4e-08  Score=91.69  Aligned_cols=105  Identities=16%  Similarity=0.111  Sum_probs=76.9

Q ss_pred             HcCCHHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHH
Q 004249          103 ALGRYEEAISVLHEVIRLEEEL--PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWLIEQGDTTW  177 (765)
Q Consensus       103 ~~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~  177 (765)
                      -.+.|..+...+..+++..+..  ...++.+|.++...|++++|+..|++++.+.|+.   +.++..+|.++...|++++
T Consensus        11 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~e   90 (168)
T CHL00033         11 IDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTK   90 (168)
T ss_pred             cccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHH
Confidence            3444556666665555544443  4667888888888888888888888888776542   3577888888888888888


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 004249          178 AMSCLSEAVKADPNDFKLKFHLASLYVELG  207 (765)
Q Consensus       178 A~~~~~~al~~~p~~~~~~~~la~~~~~~g  207 (765)
                      |+..+++++.+.|.....+..+|.++...|
T Consensus        91 A~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         91 ALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             HHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence            888888888888888888888887777433

>PRK11906 transcriptional regulator; Provisional

Probab=98.96  E-value=4.5e-08  Score=97.38  Aligned_cols=159  Identities=11%  Similarity=-0.065  Sum_probs=103.6

Q ss_pred             HHHHHHHHHcCC---HHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHhCCCCH
Q 004249          163 KLIFPWLIEQGD---TTWAMSCLSEAV---KADPNDFKLKFHLASLYVEL---------GNFQRAADVYRQMVQLCPENI  227 (765)
Q Consensus       163 ~~la~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~  227 (765)
                      +..|......+.   ...|+.+|.+++   .++|....++..++.++...         ....+|....+++++++|.++
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            334444433332   345677777777   66777777777777766543         234566777777777777777


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 004249          228 EALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKA  307 (765)
Q Consensus       228 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l  307 (765)
                      .++..+|.+....++++.|+..|++++.++|+...  +++..|.+..-.|+.++|++.+++++++    +|....+-...
T Consensus       339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~--~~~~~~~~~~~~G~~~~a~~~i~~alrL----sP~~~~~~~~~  412 (458)
T PRK11906        339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIAS--LYYYRALVHFHNEKIEEARICIDKSLQL----EPRRRKAVVIK  412 (458)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHH--HHHHHHHHHHHcCCHHHHHHHHHHHhcc----CchhhHHHHHH
Confidence            77777777777777777777777777777777766  6667777777777777777777777777    55555443333


Q ss_pred             HHH-HHhcCChhHHHHHHHhh
Q 004249          308 GIC-HIQLGNTDKAEILLTAI  327 (765)
Q Consensus       308 ~~~-~~~~~~~~~A~~~~~~~  327 (765)
                      -.+ .+-..-.+.|+.+|-+-
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~  433 (458)
T PRK11906        413 ECVDMYVPNPLKNNIKLYYKE  433 (458)
T ss_pred             HHHHHHcCCchhhhHHHHhhc
Confidence            333 44445566666666554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.96  E-value=3.6e-08  Score=89.38  Aligned_cols=93  Identities=18%  Similarity=0.141  Sum_probs=51.2

Q ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004249          125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLAS  201 (765)
Q Consensus       125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  201 (765)
                      ..+++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+++++...|.+..++..+|.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            3445555555555555555555555555544332   2455555666666666666666666666655555555555566


Q ss_pred             HHHHhCCHHHHHHHHH
Q 004249          202 LYVELGNFQRAADVYR  217 (765)
Q Consensus       202 ~~~~~g~~~~A~~~~~  217 (765)
                      ++...|+...+...+.
T Consensus       115 ~~~~~g~~~~a~~~~~  130 (172)
T PRK02603        115 IYHKRGEKAEEAGDQD  130 (172)
T ss_pred             HHHHcCChHhHhhCHH
Confidence            6555555444443333

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.94  E-value=1.1e-08  Score=83.01  Aligned_cols=94  Identities=21%  Similarity=0.322  Sum_probs=40.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q 004249          129 HILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN  208 (765)
Q Consensus       129 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  208 (765)
                      +.+|.++...|++++|+..+.++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|+
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence            33444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHh
Q 004249          209 FQRAADVYRQMVQL  222 (765)
Q Consensus       209 ~~~A~~~~~~al~~  222 (765)
                      ++.|...+.++++.
T Consensus        84 ~~~a~~~~~~~~~~   97 (100)
T cd00189          84 YEEALEAYEKALEL   97 (100)
T ss_pred             HHHHHHHHHHHHcc
Confidence            44444444444433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.94  E-value=2.8e-09  Score=83.20  Aligned_cols=81  Identities=19%  Similarity=0.197  Sum_probs=59.8

Q ss_pred             cCCHHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004249          104 LGRYEEAISVLHEVIRLEEE--LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSC  181 (765)
Q Consensus       104 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  181 (765)
                      .|+|+.|+..+++++...|.  +...++.+|.|++..|++++|+..+++ ...+|.+....+.+|.++..+|++++|+.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            57788888888888887774  345666678888888888888888877 666677777777778888888888888887


Q ss_pred             HHHH
Q 004249          182 LSEA  185 (765)
Q Consensus       182 ~~~a  185 (765)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            7764

>PRK15331 chaperone protein SicA; Provisional

Probab=98.94  E-value=4.6e-08  Score=83.19  Aligned_cols=105  Identities=16%  Similarity=0.060  Sum_probs=94.8

Q ss_pred             cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249           88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP  167 (765)
Q Consensus        88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  167 (765)
                      +......+..|..++..|++++|..+|+-....+|.+++.|..||.|+..+++|++|+..|..+..++++++...+..|.
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq  113 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ  113 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence            34566778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCH
Q 004249          168 WLIEQGDTTWAMSCLSEAVKADPNDF  193 (765)
Q Consensus       168 ~~~~~g~~~~A~~~~~~al~~~p~~~  193 (765)
                      |++.+|+...|..+|+.++. .|.+.
T Consensus       114 C~l~l~~~~~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331        114 CQLLMRKAAKARQCFELVNE-RTEDE  138 (165)
T ss_pred             HHHHhCCHHHHHHHHHHHHh-CcchH
Confidence            99999999999999999988 45543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.93  E-value=1.8e-08  Score=91.28  Aligned_cols=119  Identities=25%  Similarity=0.305  Sum_probs=84.6

Q ss_pred             cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH
Q 004249           88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEEL---PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKL  164 (765)
Q Consensus        88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~  164 (765)
                      +.....++..|..+...|++++|+..|++++...|+.   ..++..+|.++...|++++|+..+.+++...|.+...+..
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            3344556677777777777888777777777766543   3567777777777777777777777777777777777777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 004249          165 IFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN  226 (765)
Q Consensus       165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  226 (765)
                      +|.++...|+...+...+..++.                    .+++|+.++++++..+|++
T Consensus       112 lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        112 IAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence            77777777777776665555432                    2566777777777777665

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.93  E-value=9.8e-07  Score=86.66  Aligned_cols=147  Identities=10%  Similarity=0.048  Sum_probs=111.1

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCC------CCCHHHHHHHHHH
Q 004249          200 ASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDY-LKGHPT------EADFGVIDLLASM  272 (765)
Q Consensus       200 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~p~------~~~~~~~~~l~~~  272 (765)
                      ...+.+..+...+..-.+.+.....+.+.++...+..++..|++.+|.+.+... +...|.      -.....|+++|.+
T Consensus       213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI  292 (696)
T KOG2471|consen  213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI  292 (696)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceE
Confidence            344455556666666666666666677888888999999999999999887653 222222      2223356899999


Q ss_pred             HHHhccHHHHHHHHHHHHHHhc----C----------CCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHH
Q 004249          273 LVQMNAYDRVLKHIELVDLVYY----S----------GKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAES  338 (765)
Q Consensus       273 ~~~~~~~~~A~~~~~~~~~~~~----~----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  338 (765)
                      +++.|.|.-+..+|.++++...    .          .......+.++.|..++..|++-.|.++|.+++... ..+|.+
T Consensus       293 h~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf-h~nPrl  371 (696)
T KOG2471|consen  293 HYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF-HRNPRL  371 (696)
T ss_pred             eeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH-hcCcHH
Confidence            9999999999999999986211    1          123456788999999999999999999999998777 778999


Q ss_pred             HHHHHHHHH
Q 004249          339 INEIADLFK  347 (765)
Q Consensus       339 ~~~la~~~~  347 (765)
                      |..++.+.+
T Consensus       372 WLRlAEcCi  380 (696)
T KOG2471|consen  372 WLRLAECCI  380 (696)
T ss_pred             HHHHHHHHH
Confidence            999998875

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.93  E-value=2.2e-07  Score=102.23  Aligned_cols=222  Identities=13%  Similarity=0.050  Sum_probs=188.3

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC--CCHHHHHHHHHHHHHhccHHHHHHHH
Q 004249          210 QRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKG-HPTE--ADFGVIDLLASMLVQMNAYDRVLKHI  286 (765)
Q Consensus       210 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~--~~~~~~~~l~~~~~~~~~~~~A~~~~  286 (765)
                      .+..+.|++.+..+|+..-.|..........++.++|.+..++++.. ++..  ....+|..+-++...-|.-+...+.|
T Consensus      1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred             CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence            34567788888899999999998888889999999999999999864 3322  22446666666666778778888899


Q ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhcc
Q 004249          287 ELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANA  366 (765)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  366 (765)
                      +++.+.     -.+..++..|..+|...+++++|.++++.+++.. .....+|..++..++.+++-+.|..++.+++.. 
T Consensus      1521 eRAcqy-----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~- 1593 (1710)
T KOG1070|consen 1521 ERACQY-----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS- 1593 (1710)
T ss_pred             HHHHHh-----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-
Confidence            999887     4566778888999999999999999999998887 467889999999999999999999999999988 


Q ss_pred             CCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccc
Q 004249          367 GVHN--DGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKY  439 (765)
Q Consensus       367 ~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  439 (765)
                       -|.  +.+.....|.+-++.|+.+.+...|+..+..+|...+.|..+.+.-.+.|+.+-+..+|++++...-..
T Consensus      1594 -lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1594 -LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred             -cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence             565  778888899999999999999999999999999999999999999999999999999999988765443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.93  E-value=3.4e-09  Score=79.33  Aligned_cols=63  Identities=17%  Similarity=0.162  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC
Q 004249          127 SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG-DTTWAMSCLSEAVKAD  189 (765)
Q Consensus       127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~  189 (765)
                      +|..+|.+++..|++++|+..|.++++.+|+++.+++.+|.++..+| ++.+|+..++++++++
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            34444444444444444444444444444444444444444444444 3444444444444433

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.92  E-value=2.5e-08  Score=90.16  Aligned_cols=122  Identities=12%  Similarity=0.075  Sum_probs=94.8

Q ss_pred             CCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHH
Q 004249          139 GNTAKAMGCYWLAACYKQKD--SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND---FKLKFHLASLYVELGNFQRAA  213 (765)
Q Consensus       139 g~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~  213 (765)
                      +.+..+...+...++..+..  ...++.+|.++...|++++|+..|++++.+.|+.   +.++..+|.++...|++++|+
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~   92 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL   92 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence            34555666665555555444  4677889999999999999999999999886653   458999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhcCCCC
Q 004249          214 DVYRQMVQLCPENIEALKMGAKLYQ-------KSGQIE-------SSVDILEDYLKGHPTE  260 (765)
Q Consensus       214 ~~~~~al~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~~~~~~p~~  260 (765)
                      ..+++++.+.|.....+..+|.++.       ..|+++       +|+.++++++..+|.+
T Consensus        93 ~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033         93 EYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            9999999999999888888888888       666655       4444445555556654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.91  E-value=6.9e-08  Score=84.56  Aligned_cols=116  Identities=18%  Similarity=0.152  Sum_probs=67.8

Q ss_pred             HcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHH
Q 004249          137 ALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND---FKLKFHLASLYVELGNFQ  210 (765)
Q Consensus       137 ~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~  210 (765)
                      ..++...+...++..+...|+.   ..+.+.+|.+++..|++++|...|+.++...|+.   +.+.+.++.++...|+++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            3556666666666666666655   2445556666666666666666666666654433   234556666666666666


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249          211 RAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDY  253 (765)
Q Consensus       211 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  253 (765)
                      +|+..++.. ...+..+.++..+|.++...|++++|+..|+++
T Consensus       103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            666666442 222333455556666666666666666666654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.91  E-value=2.1e-08  Score=81.44  Aligned_cols=98  Identities=24%  Similarity=0.368  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004249          161 LWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS  240 (765)
Q Consensus       161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  240 (765)
                      +++.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            45667777778888888888888888777777777778888888888888888888888887777777777788888888


Q ss_pred             CCHHHHHHHHHHHHhcCC
Q 004249          241 GQIESSVDILEDYLKGHP  258 (765)
Q Consensus       241 g~~~~A~~~~~~~~~~~p  258 (765)
                      |++++|...+.+++...|
T Consensus        82 ~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          82 GKYEEALEAYEKALELDP   99 (100)
T ss_pred             HhHHHHHHHHHHHHccCC
Confidence            888888888877777665

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.91  E-value=8.4e-08  Score=101.37  Aligned_cols=137  Identities=11%  Similarity=-0.002  Sum_probs=93.9

Q ss_pred             ccCCCCHHHHHH--HHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC--------CHHHHHHHHHHH
Q 004249          153 CYKQKDSSLWKL--IFPWLIEQGD---TTWAMSCLSEAVKADPNDFKLKFHLASLYVELG--------NFQRAADVYRQM  219 (765)
Q Consensus       153 ~~~p~~~~~~~~--la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~a  219 (765)
                      ...|.+..+|-.  .|..+...++   ...|+.+|+++++.+|++..++..++.++....        +...+.....++
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            444566655533  4544544443   667888888888888888777777777665431        234555555665


Q ss_pred             HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          220 VQL--CPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       220 l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                      +..  .|.++.++..+|..+...|++++|...+++++.++|+   +.+|..+|.++...|++++|++.|++++.+
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS---WLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            553  5666677777777777778888888888888888773   236778888888888888888888888777

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=5.7e-07  Score=81.64  Aligned_cols=158  Identities=19%  Similarity=0.159  Sum_probs=93.1

Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHH
Q 004249          268 LLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFK  347 (765)
Q Consensus       268 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~  347 (765)
                      .-+.+++..|++++|+.......         ..++...-..++.++.+.+-|...++++...+   +..++..||..+.
T Consensus       113 ~aa~i~~~~~~~deAl~~~~~~~---------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv  180 (299)
T KOG3081|consen  113 LAAIIYMHDGDFDEALKALHLGE---------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWV  180 (299)
T ss_pred             HhhHHhhcCCChHHHHHHHhccc---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHH
Confidence            34445555556666655554422         12233333344555555555655555554322   2223333443332


Q ss_pred             ----ccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHH
Q 004249          348 ----NRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDE  423 (765)
Q Consensus       348 ----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  423 (765)
                          ..+.+.+|.-+|+.+-..  .|..+......+.|+..+|++++|...++.++..++++++++.++..+-...|...
T Consensus       181 ~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~  258 (299)
T KOG3081|consen  181 KLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDA  258 (299)
T ss_pred             HHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCCh
Confidence                234567777777777665  56667777777778888888888888888888877888887777777777777665


Q ss_pred             HHHH-hcCCCCCccccc
Q 004249          424 EAIS-LLTPPMSLENKY  439 (765)
Q Consensus       424 ~A~~-~~~~~~~~~~~~  439 (765)
                      ++.. .+.+....+|..
T Consensus       259 ~~~~r~l~QLk~~~p~h  275 (299)
T KOG3081|consen  259 EVTERNLSQLKLSHPEH  275 (299)
T ss_pred             HHHHHHHHHHHhcCCcc
Confidence            5443 344444444443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.91  E-value=1.1e-07  Score=93.73  Aligned_cols=20  Identities=20%  Similarity=0.028  Sum_probs=8.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHH
Q 004249          132 GLVHDALGNTAKAMGCYWLA  151 (765)
Q Consensus       132 ~~~~~~~g~~~~A~~~~~~a  151 (765)
                      |.+|...|++++|..+|.++
T Consensus        42 a~~fk~~~~~~~A~~ay~kA   61 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKA   61 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHH
Confidence            33344444444444444443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.91  E-value=6.5e-09  Score=77.78  Aligned_cols=66  Identities=24%  Similarity=0.506  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCC
Q 004249          159 SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG-NFQRAADVYRQMVQLCP  224 (765)
Q Consensus       159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p  224 (765)
                      +..|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4445555555555555555555555555555555555555555555555 45555555555555544

...

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.90  E-value=1.8e-07  Score=81.72  Aligned_cols=197  Identities=13%  Similarity=0.057  Sum_probs=142.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL  169 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  169 (765)
                      .+..++.+|..|-..|-+.-|.--|.+++.+.|+.++++..+|..+...|+++.|.+.|...++++|...-+..+.|..+
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~  143 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  143 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence            34556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004249          170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR-QMVQLCPENIEALKMGAKLYQKSGQIESSVD  248 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  248 (765)
                      +--|++.-|.+-+.+--+.+|++|---..+-.. ...-+..+|...+. ++...+ +....|....   +..|+..+ ..
T Consensus       144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d-~e~WG~~iV~---~yLgkiS~-e~  217 (297)
T COG4785         144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSD-KEQWGWNIVE---FYLGKISE-ET  217 (297)
T ss_pred             eecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhcc-HhhhhHHHHH---HHHhhccH-HH
Confidence            999999999999999999999987432222111 23345667765554 444333 2222222221   22233221 22


Q ss_pred             HHHHHHhcCCCCCC-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          249 ILEDYLKGHPTEAD-----FGVIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       249 ~~~~~~~~~p~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                      .++++.....++..     ...++.+|..+...|+.++|...|+-++..
T Consensus       218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            34444333333221     235667888888888888888888777655

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.89  E-value=5.8e-05  Score=75.79  Aligned_cols=422  Identities=10%  Similarity=0.003  Sum_probs=205.4

Q ss_pred             HHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 004249          115 HEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFK  194 (765)
Q Consensus       115 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  194 (765)
                      ++-++.+|.+.++|+.|..-+..+ -+++....|++.+...|..+.+|.......+...+|+.....|.+++..-- +.+
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlD   87 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLD   87 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHh
Confidence            455677788888887777766655 777888888888877788888887777777777788877777777775322 233


Q ss_pred             HHHH-HHHHHHHhCCHHHHH----HHHHHHHH---hCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhcC
Q 004249          195 LKFH-LASLYVELGNFQRAA----DVYRQMVQ---LCPENIEALKMGAKLYQ---------KSGQIESSVDILEDYLKGH  257 (765)
Q Consensus       195 ~~~~-la~~~~~~g~~~~A~----~~~~~al~---~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~~~~~  257 (765)
                      .|.. +..+-...|+...+.    ..|+-++.   .++....+|...+..+.         ...+.+.-...|++++..-
T Consensus        88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP  167 (656)
T KOG1914|consen   88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP  167 (656)
T ss_pred             HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence            3332 222222333333322    22333322   23444444544443322         3335555666677776532


Q ss_pred             CCCCCHHHHHHH-----------HH--HHHHhccHHHHHHHHHHHHHHhc---CCCCc-----------cHHHHHHHHHH
Q 004249          258 PTEADFGVIDLL-----------AS--MLVQMNAYDRVLKHIELVDLVYY---SGKEL-----------LLALKIKAGIC  310 (765)
Q Consensus       258 p~~~~~~~~~~l-----------~~--~~~~~~~~~~A~~~~~~~~~~~~---~~~~~-----------~~~~~~~l~~~  310 (765)
                      -.+.. ..|...           |.  +-.....|..|...+++......   ...+.           ..+.|.++.. 
T Consensus       168 m~nlE-kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~-  245 (656)
T KOG1914|consen  168 MHNLE-KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK-  245 (656)
T ss_pred             cccHH-HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH-
Confidence            22211 111111           11  11222345555555555443311   00000           0111222211 


Q ss_pred             HHhcCChh---------HHHHHHHhhcccCCCChHHHHHHHHHHHHcccc--------------HHHHHHHHHHHHhccC
Q 004249          311 HIQLGNTD---------KAEILLTAIHWENVSDHAESINEIADLFKNREL--------------YSTALKYYHMLEANAG  367 (765)
Q Consensus       311 ~~~~~~~~---------~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~~~~~~~  367 (765)
                      +.+.+-..         .-.-.+++++.-. +-.+++|+..+..+...++              .+++..+|++++... 
T Consensus       246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l-~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l-  323 (656)
T KOG1914|consen  246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYL-GYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL-  323 (656)
T ss_pred             HHhcCCcccccccHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH-
Confidence            11111100         0111222322222 3445555555544444444              556666666665442 


Q ss_pred             CCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcc
Q 004249          368 VHNDGCLHLKIAECSLALKE---REKSIIYFYKALQILEDNI-DARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSD  443 (765)
Q Consensus       368 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  443 (765)
                      ...+...++.++..-...-+   .+.-...+.+++.....++ -++..+...-.+..-...|..+|.++.+.....    
T Consensus       324 ~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~----  399 (656)
T KOG1914|consen  324 LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR----  399 (656)
T ss_pred             HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc----
Confidence            22233344444433332222   4455555666655533332 234444444444445666666776666532221    


Q ss_pred             cchhhhhhhHHHHHHHHH-HHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 004249          444 KTHAWWLNIRIKIKLCRI-YKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLIL  522 (765)
Q Consensus       444 ~~~~~~~~~~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  522 (765)
                              ..++..-|.+ |...++..-|..+|.--++         ..++++...+.....+...++-..|..+|++++
T Consensus       400 --------hhVfVa~A~mEy~cskD~~~AfrIFeLGLk---------kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l  462 (656)
T KOG1914|consen  400 --------HHVFVAAALMEYYCSKDKETAFRIFELGLK---------KFGDSPEYVLKYLDFLSHLNDDNNARALFERVL  462 (656)
T ss_pred             --------chhhHHHHHHHHHhcCChhHHHHHHHHHHH---------hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence                    1222222221 3345566666666666554         445566666666666666777777777777776


Q ss_pred             HhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCC
Q 004249          523 KLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHP  565 (765)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p  565 (765)
                      ...  ..++....++......-..-|+....+..-++-...+|
T Consensus       463 ~s~--l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  463 TSV--LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             hcc--CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence            641  11223333344333355556666666666655555555

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.89  E-value=4e-09  Score=77.73  Aligned_cols=62  Identities=23%  Similarity=0.388  Sum_probs=30.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 004249           97 DASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD  158 (765)
Q Consensus        97 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~  158 (765)
                      +|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            34444555555555555555555555555555555555555555555555555555444443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.87  E-value=8.5e-05  Score=76.97  Aligned_cols=48  Identities=17%  Similarity=0.241  Sum_probs=37.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHH
Q 004249          101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYW  149 (765)
Q Consensus       101 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  149 (765)
                      .+..|+|+.|...++. +...|+....|..++......|+.--|..+|.
T Consensus       454 aid~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfa  501 (1636)
T KOG3616|consen  454 AIDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFA  501 (1636)
T ss_pred             ccccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            4678999999887764 56677777788888888888888777777765

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=7.7e-08  Score=93.24  Aligned_cols=99  Identities=18%  Similarity=0.238  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004249          160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK  239 (765)
Q Consensus       160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  239 (765)
                      .++.+++.|+.++++|.+|+....+++..+|+|..+++..|.++...|+++.|+..|++++++.|.|-.+...+..+-.+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK  337 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            35667777788888888888888888888888888888888888888888888888888888888877777777776666


Q ss_pred             cCCHHHH-HHHHHHHHhcCC
Q 004249          240 SGQIESS-VDILEDYLKGHP  258 (765)
Q Consensus       240 ~g~~~~A-~~~~~~~~~~~p  258 (765)
                      ...+.+. .+.|.+++..-+
T Consensus       338 ~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  338 IREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHhhccc
Confidence            5555443 667777766543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.87  E-value=1e-06  Score=80.69  Aligned_cols=161  Identities=17%  Similarity=0.149  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH---HHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS---SLWK  163 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~  163 (765)
                      .+..++.+|...++.|+|++|+..|+.+....|.++   .+...++.++++.+++++|+..+++-+.+.|.++   .+++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            356788999999999999999999999999988765   7889999999999999999999999999988766   4566


Q ss_pred             HHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCHHH-----------------HHHHHHHHHHhCCHHHHHHHHHH
Q 004249          164 LIFPWLIEQ--------GDTTWAMSCLSEAVKADPNDFKL-----------------KFHLASLYVELGNFQRAADVYRQ  218 (765)
Q Consensus       164 ~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~~~~  218 (765)
                      ..|.+++..        .-..+|+..|+..+...|++.-+                 -..+|..|.+.|.+-.|+.-++.
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~  192 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE  192 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            677775542        12456778888888888876421                 12344555555555555555555


Q ss_pred             HHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 004249          219 MVQLCPEN---IEALKMGAKLYQKSGQIESSVDIL  250 (765)
Q Consensus       219 al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~  250 (765)
                      +++..|+.   .+++..+..+|..+|-.++|...-
T Consensus       193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~  227 (254)
T COG4105         193 VLENYPDTSAVREALARLEEAYYALGLTDEAKKTA  227 (254)
T ss_pred             HHhccccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence            55554433   234445555555555555554433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.87  E-value=6.2e-08  Score=95.47  Aligned_cols=211  Identities=17%  Similarity=0.208  Sum_probs=128.7

Q ss_pred             CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHhCCHHHHH
Q 004249          140 NTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADP--ND----FKLKFHLASLYVELGNFQRAA  213 (765)
Q Consensus       140 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~  213 (765)
                      ++++|...|.++              |.+|...|++++|..+|.++....-  ++    ...+...+.++... ++++|+
T Consensus        30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai   94 (282)
T PF14938_consen   30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI   94 (282)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred             CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence            566666666654              6778888999999999988876521  11    24455666666555 899999


Q ss_pred             HHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHH
Q 004249          214 DVYRQMVQLCPEN------IEALKMGAKLYQKS-GQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRV  282 (765)
Q Consensus       214 ~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A  282 (765)
                      .+|++++.+.-..      ...+..+|.+|... |++++|+++|+++++.......    ...+..++.++...|+|++|
T Consensus        95 ~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A  174 (282)
T PF14938_consen   95 ECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA  174 (282)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH
Confidence            9999988753211      45677888888887 8888888888888776433222    22455778888888888888


Q ss_pred             HHHHHHHHHHhcCCCCc---cHHHHHHHHHHHHhcCChhHHHHHHHhhcccCC----CChHHHHHHHHHHHH--ccccHH
Q 004249          283 LKHIELVDLVYYSGKEL---LLALKIKAGICHIQLGNTDKAEILLTAIHWENV----SDHAESINEIADLFK--NRELYS  353 (765)
Q Consensus       283 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~la~~~~--~~g~~~  353 (765)
                      +..|+++........-.   ....++..+.|++..||+..|...+++.....+    +........+...+-  ....++
T Consensus       175 ~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~  254 (282)
T PF14938_consen  175 IEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFT  254 (282)
T ss_dssp             HHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHH
T ss_pred             HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHH
Confidence            88888877652111111   112345667777778888888777777654431    112234444444442  344566


Q ss_pred             HHHHHHHHHHhc
Q 004249          354 TALKYYHMLEAN  365 (765)
Q Consensus       354 ~A~~~~~~~~~~  365 (765)
                      +|+.-|+.+..+
T Consensus       255 ~av~~~d~~~~l  266 (282)
T PF14938_consen  255 EAVAEYDSISRL  266 (282)
T ss_dssp             HHCHHHTTSS--
T ss_pred             HHHHHHcccCcc
Confidence            666666655444

>PRK15331 chaperone protein SicA; Provisional

Probab=98.86  E-value=3.6e-08  Score=83.81  Aligned_cols=108  Identities=9%  Similarity=0.048  Sum_probs=92.9

Q ss_pred             hhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004249          120 LEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHL  199 (765)
Q Consensus       120 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  199 (765)
                      +.++.-+..+..|.-++..|++++|...|+-+.-.+|.++..|..||.++..+++|++|+..|..+..++++++...+..
T Consensus        32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a  111 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT  111 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence            34444577888888889999999999999998888999999999999999999999999999999999989999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 004249          200 ASLYVELGNFQRAADVYRQMVQLCPENIE  228 (765)
Q Consensus       200 a~~~~~~g~~~~A~~~~~~al~~~p~~~~  228 (765)
                      |.|+...|+...|..+|..++. .|.+..
T Consensus       112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~~  139 (165)
T PRK15331        112 GQCQLLMRKAAKARQCFELVNE-RTEDES  139 (165)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHh-CcchHH
Confidence            9999999999999999999887 455433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.86  E-value=6.1e-08  Score=92.65  Aligned_cols=105  Identities=16%  Similarity=0.119  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CHHHHH
Q 004249           91 IRRMLGDASLH-YALGRYEEAISVLHEVIRLEEEL---PNSYHILGLVHDALGNTAKAMGCYWLAACYKQK---DSSLWK  163 (765)
Q Consensus        91 ~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~  163 (765)
                      ....+..|..+ +..|+|++|+..|+.+++..|++   +.+++.+|.+|+..|++++|+..|.+++...|+   .+++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            45566666665 55788888888888888888887   478888888888888888888888888877665   457788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 004249          164 LIFPWLIEQGDTTWAMSCLSEAVKADPNDFKL  195 (765)
Q Consensus       164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  195 (765)
                      .+|.++...|++++|...|+++++..|+...+
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            88888888888888888888888888877644

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.85  E-value=1.3e-08  Score=75.06  Aligned_cols=62  Identities=21%  Similarity=0.292  Sum_probs=33.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249          131 LGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND  192 (765)
Q Consensus       131 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  192 (765)
                      +|..++..|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++.+|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            45555555555555555555555555555555555555555555555555555555555544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.84  E-value=7.4e-09  Score=80.84  Aligned_cols=79  Identities=22%  Similarity=0.323  Sum_probs=38.4

Q ss_pred             CCHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 004249          139 GNTAKAMGCYWLAACYKQK--DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVY  216 (765)
Q Consensus       139 g~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  216 (765)
                      |+++.|+..+++++..+|.  +...++.+|.+++..|++++|+.++++ ...+|.++...+.+|.++..+|++++|+.+|
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            4555555555555555543  233444455555555555555555555 4444444444445555555555555555555


Q ss_pred             HH
Q 004249          217 RQ  218 (765)
Q Consensus       217 ~~  218 (765)
                      ++
T Consensus        82 ~~   83 (84)
T PF12895_consen   82 EK   83 (84)
T ss_dssp             HH
T ss_pred             hc
Confidence            43

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=1.1e-06  Score=79.77  Aligned_cols=244  Identities=14%  Similarity=0.083  Sum_probs=110.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249           99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWA  178 (765)
Q Consensus        99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A  178 (765)
                      +.++-.|+|..++..-.+.-... ...+....+.+.|..+|.+...+......-   .....+...++.....-++.+.-
T Consensus        16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~   91 (299)
T KOG3081|consen   16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSI   91 (299)
T ss_pred             HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHH
Confidence            44555666666665555443222 444555556666666666554443332221   11223333344444334443333


Q ss_pred             HHHHHHHHhcC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004249          179 MSCLSEAVKAD--PNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKG  256 (765)
Q Consensus       179 ~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  256 (765)
                      +.-+.+.+...  ..+......-|.++...|++++|+......     .+.++...-..++.++.+.+-|...++++.+.
T Consensus        92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i  166 (299)
T KOG3081|consen   92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQI  166 (299)
T ss_pred             HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            33333322221  112223333344555555555555554442     23333444444555555555555555555554


Q ss_pred             CCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChH
Q 004249          257 HPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHA  336 (765)
Q Consensus       257 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  336 (765)
                      +.+.    .+..|+..+...                                  ....+++..|.-+|+.+-.+. +..+
T Consensus       167 ded~----tLtQLA~awv~l----------------------------------a~ggek~qdAfyifeE~s~k~-~~T~  207 (299)
T KOG3081|consen  167 DEDA----TLTQLAQAWVKL----------------------------------ATGGEKIQDAFYIFEELSEKT-PPTP  207 (299)
T ss_pred             chHH----HHHHHHHHHHHH----------------------------------hccchhhhhHHHHHHHHhccc-CCCh
Confidence            4332    223344433322                                  001123444444455443333 3334


Q ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHH
Q 004249          337 ESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSI  392 (765)
Q Consensus       337 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  392 (765)
                      ......+.+.+.+|+|++|...++.++..  ++++++++.++..+-...|...++.
T Consensus       208 ~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~~~~  261 (299)
T KOG3081|consen  208 LLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDAEVT  261 (299)
T ss_pred             HHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCChHHH
Confidence            45555555555555555555555555555  5555555555555555555544333

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.83  E-value=8.8e-06  Score=77.97  Aligned_cols=294  Identities=13%  Similarity=-0.028  Sum_probs=169.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH-HHHHHHHHH
Q 004249           92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEEL--PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS-SLWKLIFPW  168 (765)
Q Consensus        92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~  168 (765)
                      ..-+..|.+....|+-..|...-.+.-+.-..+  +-++..-++.-...|+++.|.+-|+.++. +|... -.+..|-.-
T Consensus        85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyle  163 (531)
T COG3898          85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLE  163 (531)
T ss_pred             HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHH
Confidence            344555666666677777776666665443333  23444445566666777777777766653 22211 112222223


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCCCH-----HHHHHHHHHHHHc
Q 004249          169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL---CPENI-----EALKMGAKLYQKS  240 (765)
Q Consensus       169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~-----~~~~~la~~~~~~  240 (765)
                      ....|..+.|+.+-+++-..-|.-+.++...-...+..|+++.|++..+.....   .++-.     ..+...+... -.
T Consensus       164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ld  242 (531)
T COG3898         164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LD  242 (531)
T ss_pred             HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hc
Confidence            345677777777777777777776666666666666777777777766654332   22211     1111111111 22


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHH
Q 004249          241 GQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKA  320 (765)
Q Consensus       241 g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  320 (765)
                      -+...|...-.++.++.|+...  .-..-+..+++.|+..++-.+++.+-+.    .|.+.     ++..|....--+.+
T Consensus       243 adp~~Ar~~A~~a~KL~pdlvP--aav~AAralf~d~~~rKg~~ilE~aWK~----ePHP~-----ia~lY~~ar~gdta  311 (531)
T COG3898         243 ADPASARDDALEANKLAPDLVP--AAVVAARALFRDGNLRKGSKILETAWKA----EPHPD-----IALLYVRARSGDTA  311 (531)
T ss_pred             CChHHHHHHHHHHhhcCCccch--HHHHHHHHHHhccchhhhhhHHHHHHhc----CCChH-----HHHHHHHhcCCCcH
Confidence            3466666667777777777665  3346666777777777777777777666    33222     12222222222333


Q ss_pred             HHHHHhh--cccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHH
Q 004249          321 EILLTAI--HWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLAL-KEREKSIIYFYK  397 (765)
Q Consensus       321 ~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~  397 (765)
                      +.-++++  +....+++.+.....+..-+..|++..|..--+.+...  .|.. .++..++.+-... |+-.+...++-+
T Consensus       312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pre-s~~lLlAdIeeAetGDqg~vR~wlAq  388 (531)
T COG3898         312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRE-SAYLLLADIEEAETGDQGKVRQWLAQ  388 (531)
T ss_pred             HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--Cchh-hHHHHHHHHHhhccCchHHHHHHHHH
Confidence            3333332  23334677777777777777788887777777777666  5533 5666677776665 788888888888


Q ss_pred             HHHH
Q 004249          398 ALQI  401 (765)
Q Consensus       398 al~~  401 (765)
                      +++.
T Consensus       389 av~A  392 (531)
T COG3898         389 AVKA  392 (531)
T ss_pred             HhcC
Confidence            7764

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.82  E-value=3.9e-05  Score=73.74  Aligned_cols=293  Identities=15%  Similarity=0.049  Sum_probs=215.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHh
Q 004249          130 ILGLVHDALGNTAKAMGCYWLAACYKQKD--SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF-KLKFHLASLYVEL  206 (765)
Q Consensus       130 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~  206 (765)
                      .-|.+....|+-..|.+.-.++-++-..+  +-++..-++.-.-.|+++.|.+-|+.++. +|..- -.+..|-.-....
T Consensus        89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~  167 (531)
T COG3898          89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRL  167 (531)
T ss_pred             hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhc
Confidence            34667777899999999988877543333  34455567778889999999999998876 34322 2233333344578


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCCC-HHHHHHHHHHH-HHhccHHH
Q 004249          207 GNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKG---HPTEAD-FGVIDLLASML-VQMNAYDR  281 (765)
Q Consensus       207 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~-~~~~~~l~~~~-~~~~~~~~  281 (765)
                      |..+.|..+-+++-...|.-+.++...-...+..|+++.|+++.+.....   .++..+ .++...-+... .-..+...
T Consensus       168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~  247 (531)
T COG3898         168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS  247 (531)
T ss_pred             ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence            99999999999999999999999988888899999999999999876543   232222 11111222222 22246788


Q ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHH
Q 004249          282 VLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHM  361 (765)
Q Consensus       282 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  361 (765)
                      |...-.++.++    .+.....-..-+..++..|+..++-.+++.+-+..  .+++++..  .++.+.|+  .++.-+++
T Consensus       248 Ar~~A~~a~KL----~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gd--ta~dRlkR  317 (531)
T COG3898         248 ARDDALEANKL----APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGD--TALDRLKR  317 (531)
T ss_pred             HHHHHHHHhhc----CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCC--cHHHHHHH
Confidence            89998999988    67777777788889999999999999999987654  23443322  23344554  44444444


Q ss_pred             H---HhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCHHHHHHhcCCCCCcc
Q 004249          362 L---EANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLED-AKDEEAISLLTPPMSLE  436 (765)
Q Consensus       362 ~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~  436 (765)
                      +   ..+  .|++.+..+..+...+..|++..|...-+.+....|. ..++..|+.+-... |+-.++...+.+++...
T Consensus       318 a~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~AP  393 (531)
T COG3898         318 AKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP  393 (531)
T ss_pred             HHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence            4   445  7999999999999999999999999999999999886 45677788887765 99999999998887753

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.81  E-value=2e-08  Score=93.69  Aligned_cols=99  Identities=16%  Similarity=0.078  Sum_probs=57.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 004249           97 DASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTT  176 (765)
Q Consensus        97 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~  176 (765)
                      +|+.|+.+|+|++|+.+|.+.+..+|.++..+.+.+.+|++...|..|...+..++.++.....+|...+.+-..+|...
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~  182 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM  182 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence            45555666666666666666666666555555566666666666666665555555555555555555555555555555


Q ss_pred             HHHHHHHHHHhcCCCCHHH
Q 004249          177 WAMSCLSEAVKADPNDFKL  195 (765)
Q Consensus       177 ~A~~~~~~al~~~p~~~~~  195 (765)
                      +|.+-++.++.+.|++.+.
T Consensus       183 EAKkD~E~vL~LEP~~~EL  201 (536)
T KOG4648|consen  183 EAKKDCETVLALEPKNIEL  201 (536)
T ss_pred             HHHHhHHHHHhhCcccHHH
Confidence            6655555555555554443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.80  E-value=2.9e-05  Score=75.80  Aligned_cols=154  Identities=21%  Similarity=0.218  Sum_probs=76.3

Q ss_pred             CCHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 004249          139 GNTAKAMGCYWLAACYKQK--DSSLWKLIFPWLIEQGDTTWAMSCLSEAVK--ADPNDFKLKFHLASLYVELGNFQRAAD  214 (765)
Q Consensus       139 g~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~  214 (765)
                      +.+..+...+...+...+.  ........+..+...+.+..+...+...+.  ..+.....+...+..+...+++..++.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            4444445555555444443  244444555555555555555555555554  344455555555555555555555555


Q ss_pred             HHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          215 VYRQMVQLCPENIEALKMGAK-LYQKSGQIESSVDILEDYLKGHPT-EADFGVIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       215 ~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                      .+..++...+.........+. ++...|+++.|...+.+++...|. ......+...+..+...++++.++..+.+++..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  196 (291)
T COG0457         117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL  196 (291)
T ss_pred             HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence            555555554444333333333 555555555555555555544332 111112333333444455555555555555554

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.80  E-value=0.00023  Score=70.51  Aligned_cols=459  Identities=14%  Similarity=0.074  Sum_probs=227.6

Q ss_pred             hHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCH---HHHHHHHHHH-HHcCCHHHHHHHHHHHHhcC---CCC----
Q 004249          126 NSYHILGLVHDALG--NTAKAMGCYWLAACYKQKDS---SLWKLIFPWL-IEQGDTTWAMSCLSEAVKAD---PND----  192 (765)
Q Consensus       126 ~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~-~~~g~~~~A~~~~~~al~~~---p~~----  192 (765)
                      .++..+|..+...|  +..+++++++..+...|...   .....+|.++ ....+++.|...++++..+.   |..    
T Consensus         8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK   87 (629)
T KOG2300|consen    8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK   87 (629)
T ss_pred             HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence            44556666666666  66777777777666655432   3344455543 34566777777777776552   221    


Q ss_pred             HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCC-CHHH
Q 004249          193 FKLKFHLASLYVELG-NFQRAADVYRQMVQLCPENI----EALKMGAKLYQKSGQIESSVDILEDYLKG-HPTEA-DFGV  265 (765)
Q Consensus       193 ~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~-~~~~  265 (765)
                      .++...++.+|.... .+..|...+++++++....+    ...+.++.+..-..++..|++.+.-..+. ++... ..++
T Consensus        88 f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~  167 (629)
T KOG2300|consen   88 FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRM  167 (629)
T ss_pred             hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHH
Confidence            244556666666655 66666777777776665543    34456666666667777766663322111 11100 0112


Q ss_pred             HHHH--HHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHH------HHHHHH-HHHhcCChhHHHHHHHhhc---ccCCC
Q 004249          266 IDLL--ASMLVQMNAYDRVLKHIELVDLVYYSGKELLLAL------KIKAGI-CHIQLGNTDKAEILLTAIH---WENVS  333 (765)
Q Consensus       266 ~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------~~~l~~-~~~~~~~~~~A~~~~~~~~---~~~~~  333 (765)
                      ++.+  +.++....+..+.......+-++.....++...-      +..+-. .|...|+...+...++++-   ....+
T Consensus       168 ~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist  247 (629)
T KOG2300|consen  168 LFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIST  247 (629)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCC
Confidence            2222  2222333333333333333333322111111110      111111 1223343333333333221   00000


Q ss_pred             Ch---HHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCC-CHHHHHHHHH--HHHHhccHHHHHHHHHHHHHHc-----
Q 004249          334 DH---AESINEIADLFKNRELYSTALKYYHMLEANAGVHN-DGCLHLKIAE--CSLALKEREKSIIYFYKALQIL-----  402 (765)
Q Consensus       334 ~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~-----  402 (765)
                      .+   .+.+         .|..  ....|.-      -|+ ...++..+-.  .-.-.|-+++|.++-++++...     
T Consensus       248 ~~~~h~e~i---------lgsp--s~~l~~w------lpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq  310 (629)
T KOG2300|consen  248 SSRGHDEKI---------LGSP--SPILFEW------LPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQ  310 (629)
T ss_pred             CCCCccccc---------cCCC--ChHHHhh------ccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhccc
Confidence            00   0000         0000  0000000      000 0001111111  0112344556666555555432     


Q ss_pred             -CCCHHH--------HHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHH
Q 004249          403 -EDNIDA--------RLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVD  473 (765)
Q Consensus       403 -p~~~~~--------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~  473 (765)
                       |....+        .-.++.+-.-.|++.+|++-+..+.+.....  |.........+.+.+.+|..-..-+.++.|..
T Consensus       311 ~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~--p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~  388 (629)
T KOG2300|consen  311 ADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRF--PTPLLLRAHEAQIHMLLGLYSHSVNCYENAEF  388 (629)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC--CchHHHHHhHHHHHHHHhhHhhhcchHHHHHH
Confidence             111111        2224444555799999988776655533222  11111223346778888888889999999999


Q ss_pred             hhHHHHhhhcccccccChhh--HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccC-CCCch-----HHHHHHHHhhccc
Q 004249          474 MLLPLVCESSHQEETFNHEE--HRLLIIDLCKTLASLHRYEDAIKIINLILKLGYG-KFPVE-----KEELYFLGAQIPC  545 (765)
Q Consensus       474 ~~~~~~~~~~~l~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~-----~~~~~~~~~~~~~  545 (765)
                      .|..+++..        ...  ..-+-.++|.+|.+.|+-+.-.++++.   ++|. ..+-.     ...++..|. ..+
T Consensus       389 hf~~a~k~t--------~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~gl-faf  456 (629)
T KOG2300|consen  389 HFIEATKLT--------ESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGL-FAF  456 (629)
T ss_pred             HHHHHHHhh--------hHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHH-HHH
Confidence            998888643        222  334455788889988876655444442   2322 11111     233444444 788


Q ss_pred             ccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHH
Q 004249          546 NTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAARE  625 (765)
Q Consensus       546 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~  625 (765)
                      .++++.+|...+++.++..  |...++.+.                           ...++++|++....|+..++...
T Consensus       457 ~qn~lnEaK~~l~e~Lkma--naed~~rL~---------------------------a~~LvLLs~v~lslgn~~es~nm  507 (629)
T KOG2300|consen  457 KQNDLNEAKRFLRETLKMA--NAEDLNRLT---------------------------ACSLVLLSHVFLSLGNTVESRNM  507 (629)
T ss_pred             HhccHHHHHHHHHHHHhhc--chhhHHHHH---------------------------HHHHHHHHHHHHHhcchHHHHhc
Confidence            9999999999999999864  222212111                           12246789999999999998888


Q ss_pred             HHHHHhhC---CCChHHHHHHH
Q 004249          626 YLEAYKLL---PENPLINLCVG  644 (765)
Q Consensus       626 ~~~a~~~~---p~~~~~~~~l~  644 (765)
                      ..-++.+.   |+-|......+
T Consensus       508 vrpamqlAkKi~Di~vqLws~s  529 (629)
T KOG2300|consen  508 VRPAMQLAKKIPDIPVQLWSSS  529 (629)
T ss_pred             cchHHHHHhcCCCchHHHHHHH
Confidence            87666544   66555554433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.77  E-value=2.5e-07  Score=88.48  Aligned_cols=89  Identities=18%  Similarity=0.256  Sum_probs=43.8

Q ss_pred             cCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHH
Q 004249          172 QGDTTWAMSCLSEAVKADPND---FKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN---IEALKMGAKLYQKSGQIES  245 (765)
Q Consensus       172 ~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~  245 (765)
                      .|++++|+..|+..+...|++   +.+++.+|.+|+..|++++|+..|+++++..|++   +++++.+|.++...|++++
T Consensus       156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~  235 (263)
T PRK10803        156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK  235 (263)
T ss_pred             cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence            445555555555555544444   2444555555555555555555555555444442   3444444555555555555


Q ss_pred             HHHHHHHHHhcCCCC
Q 004249          246 SVDILEDYLKGHPTE  260 (765)
Q Consensus       246 A~~~~~~~~~~~p~~  260 (765)
                      |+..|+++++.+|++
T Consensus       236 A~~~~~~vi~~yP~s  250 (263)
T PRK10803        236 AKAVYQQVIKKYPGT  250 (263)
T ss_pred             HHHHHHHHHHHCcCC
Confidence            555555555555544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.76  E-value=3.5e-05  Score=75.24  Aligned_cols=227  Identities=25%  Similarity=0.256  Sum_probs=185.6

Q ss_pred             cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004249          172 QGDTTWAMSCLSEAVKADPN--DFKLKFHLASLYVELGNFQRAADVYRQMVQ--LCPENIEALKMGAKLYQKSGQIESSV  247 (765)
Q Consensus       172 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~  247 (765)
                      .+.+..+...+...+...+.  ........+..+...+.+..+...+...+.  ..+.....+...+..+...+++..++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            56778888888888887776  378888999999999999999999999987  67888889999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHh
Q 004249          248 DILEDYLKGHPTEADFGVIDLLAS-MLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTA  326 (765)
Q Consensus       248 ~~~~~~~~~~p~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  326 (765)
                      ..+..++...+....  .....+. ++...|+++.|...+.+++.. .+............+..+...++++.++..+.+
T Consensus       116 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  192 (291)
T COG0457         116 ELLEKALALDPDPDL--AEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEK  192 (291)
T ss_pred             HHHHHHHcCCCCcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence            999999998877744  3335555 899999999999999999664 211013444555556667788899999999999


Q ss_pred             hcccCCCC-hHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC
Q 004249          327 IHWENVSD-HAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED  404 (765)
Q Consensus       327 ~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  404 (765)
                      ++... +. ....+..++..+...+++..|+..+..++..  .|.....+..++..+...+..+.+...+.+++...|.
T Consensus       193 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         193 ALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            87766 44 5778888999999999999999999999888  6766677777788777777799999999999998887

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=1.6e-07  Score=91.07  Aligned_cols=97  Identities=19%  Similarity=0.271  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 004249          194 KLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASML  273 (765)
Q Consensus       194 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~  273 (765)
                      .++.+++.++.++++|..|+....+++...|+|..+++..|.++...|+++.|+..|+++++..|++..  +...+..+.
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka--~~~el~~l~  335 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA--ARAELIKLK  335 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH--HHHHHHHHH
Confidence            456677777777777777777777777777777777777777777777777777777777777777755  344555555


Q ss_pred             HHhccHHHH-HHHHHHHHHH
Q 004249          274 VQMNAYDRV-LKHIELVDLV  292 (765)
Q Consensus       274 ~~~~~~~~A-~~~~~~~~~~  292 (765)
                      .+...+.+. .+.|..+...
T Consensus       336 ~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  336 QKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHHHhhc
Confidence            555444443 5566666554

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.74  E-value=3.6e-07  Score=75.16  Aligned_cols=95  Identities=22%  Similarity=0.222  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPN---DFKLKFHL  199 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l  199 (765)
                      .+++.+|.++-..|+.++|+.+|++++......   ..++..+|..+..+|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            355666666666666666666666666654332   345666666666666666666666666666555   45555556


Q ss_pred             HHHHHHhCCHHHHHHHHHHHH
Q 004249          200 ASLYVELGNFQRAADVYRQMV  220 (765)
Q Consensus       200 a~~~~~~g~~~~A~~~~~~al  220 (765)
                      +.++...|+.++|+..+-.++
T Consensus        82 Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHH
Confidence            666666666666666665554

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.73  E-value=0.00043  Score=69.80  Aligned_cols=397  Identities=11%  Similarity=0.017  Sum_probs=215.7

Q ss_pred             HHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 004249          149 WLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE  228 (765)
Q Consensus       149 ~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  228 (765)
                      ++-++.+|.+..+|+.|.+-+..+ -+++....|++.+...|..+.+|..........++|+.....|.+++...- +.+
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlD   87 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLD   87 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHh
Confidence            566788999999999998877666 899999999999999999999999999999999999999999999986433 244


Q ss_pred             HHHH-HHHHHHHcCCHHHHHHHHHHH----Hh---cCCCCCCHHHHHHHHHHH---------HHhccHHHHHHHHHHHHH
Q 004249          229 ALKM-GAKLYQKSGQIESSVDILEDY----LK---GHPTEADFGVIDLLASML---------VQMNAYDRVLKHIELVDL  291 (765)
Q Consensus       229 ~~~~-la~~~~~~g~~~~A~~~~~~~----~~---~~p~~~~~~~~~~l~~~~---------~~~~~~~~A~~~~~~~~~  291 (765)
                      .|.. +..+-...|+...+....-++    +.   .++.+..  +|...+..+         ..+.+.+...+.|++++.
T Consensus        88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~s--iW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~  165 (656)
T KOG1914|consen   88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYS--IWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV  165 (656)
T ss_pred             HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccch--hHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence            4432 333333445544443333333    22   2333333  455444433         223355555666666665


Q ss_pred             HhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhcc--C--
Q 004249          292 VYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANA--G--  367 (765)
Q Consensus       292 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~--  367 (765)
                      .    .-.+.+-..+      .-..+++.+....               ..-.+--....|..|...+++...+.  .  
T Consensus       166 t----Pm~nlEkLW~------DY~~fE~~IN~~t---------------arK~i~e~s~~Ym~AR~~~qel~~lt~GL~r  220 (656)
T KOG1914|consen  166 T----PMHNLEKLWK------DYEAFEQEINIIT---------------ARKFIGERSPEYMNARRVYQELQNLTRGLNR  220 (656)
T ss_pred             C----ccccHHHHHH------HHHHHHHHHHHHH---------------HHHHHHhhCHHHHHHHHHHHHHHHHHhhhcc
Confidence            4    1111111110      0011111111000               00001111222333333333332210  0  


Q ss_pred             -CCC-----------CHHHHHHHHHHHHHh------cc--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC------
Q 004249          368 -VHN-----------DGCLHLKIAECSLAL------KE--REKSIIYFYKALQILEDNIDARLTLASLLLEDAK------  421 (765)
Q Consensus       368 -~~~-----------~~~~~~~la~~~~~~------g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------  421 (765)
                       .|.           ..+.|.++...-...      |.  -..-.-.|++++..-+-.++.|+..+..+...++      
T Consensus       221 ~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~  300 (656)
T KOG1914|consen  221 NAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKG  300 (656)
T ss_pred             cCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhc
Confidence             110           012232222221111      11  1122234667777777788888776666555555      


Q ss_pred             --------HHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcch---hHHHHHhhHHHHhhhcccccccC
Q 004249          422 --------DEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGM---IEGFVDMLLPLVCESSHQEETFN  490 (765)
Q Consensus       422 --------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~l~~~~~  490 (765)
                              .+++..+++.+++.....           +...++.++..-...-+   .+.--..+.+++.-        .
T Consensus       301 d~~~a~~~t~e~~~~yEr~I~~l~~~-----------~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~--------~  361 (656)
T KOG1914|consen  301 DVPDAKSLTDEAASIYERAIEGLLKE-----------NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKI--------E  361 (656)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhh--------h
Confidence                    566677776666532211           11222222222211111   22333334333321        1


Q ss_pred             hhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhh
Q 004249          491 HEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTT  570 (765)
Q Consensus       491 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  570 (765)
                      +.+-.-++..+-....+..-...|+.+|.++.+....  + ....+..... =|+..++..-|...|+-.+..+++++..
T Consensus       362 ~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~--~-hhVfVa~A~m-Ey~cskD~~~AfrIFeLGLkkf~d~p~y  437 (656)
T KOG1914|consen  362 DIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT--R-HHVFVAAALM-EYYCSKDKETAFRIFELGLKKFGDSPEY  437 (656)
T ss_pred             ccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC--c-chhhHHHHHH-HHHhcCChhHHHHHHHHHHHhcCCChHH
Confidence            1111223334444445556678889999998875521  1 1112222222 4667899999999999999999999999


Q ss_pred             hHHHHHHHhhhhhhhhHHHHHHHHHHHh
Q 004249          571 WNRYYKLVSRFEKIFSKHAKLLRNVRAK  598 (765)
Q Consensus       571 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~  598 (765)
                      -+.|...+...++. ..+...+++.+..
T Consensus       438 v~~YldfL~~lNdd-~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  438 VLKYLDFLSHLNDD-NNARALFERVLTS  464 (656)
T ss_pred             HHHHHHHHHHhCcc-hhHHHHHHHHHhc
Confidence            99998888877765 4666777777665

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.73  E-value=5.1e-06  Score=81.77  Aligned_cols=338  Identities=13%  Similarity=0.059  Sum_probs=216.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHH-hccCCC------C--HHHHHHH
Q 004249           95 LGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLA-ACYKQK------D--SSLWKLI  165 (765)
Q Consensus        95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-~~~~p~------~--~~~~~~l  165 (765)
                      ..+...+++..+...+..-.+.+..+..+.+.+.+..+..++..|++.+|.+.+... +...|.      .  -.+|.++
T Consensus       210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNl  289 (696)
T KOG2471|consen  210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNL  289 (696)
T ss_pred             HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCc
Confidence            344556777888888888888888777788899999999999999999999988654 222222      2  2456789


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhc---------CC---------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 004249          166 FPWLIEQGDTTWAMSCLSEAVKA---------DP---------NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI  227 (765)
Q Consensus       166 a~~~~~~g~~~~A~~~~~~al~~---------~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  227 (765)
                      |.+++..|.|.-+..+|.++++.         .|         ...++.++.|..|...|+.-.|.++|.++......+|
T Consensus       290 GcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP  369 (696)
T KOG2471|consen  290 GCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP  369 (696)
T ss_pred             ceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc
Confidence            99999999999999999999851         11         2346789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHH--H--------------Hhc-----CCCCCC-HHHHHHHHHHHHHhccH---
Q 004249          228 EALKMGAKLYQKSGQ---IESSVDILED--Y--------------LKG-----HPTEAD-FGVIDLLASMLVQMNAY---  279 (765)
Q Consensus       228 ~~~~~la~~~~~~g~---~~~A~~~~~~--~--------------~~~-----~p~~~~-~~~~~~l~~~~~~~~~~---  279 (765)
                      ..|..++.++....+   .++......+  .              ++.     .|.+.. +..-..++.+..+.+-+   
T Consensus       370 rlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~  449 (696)
T KOG2471|consen  370 RLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLN  449 (696)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCc
Confidence            999999998874321   2221111111  0              000     000000 00111233333222110   


Q ss_pred             --HHHHHHHHHHHHH----------------------------hcCCCCccH--------HHHHHHHHHHHhcCChhHHH
Q 004249          280 --DRVLKHIELVDLV----------------------------YYSGKELLL--------ALKIKAGICHIQLGNTDKAE  321 (765)
Q Consensus       280 --~~A~~~~~~~~~~----------------------------~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~  321 (765)
                        ..--..+.-+...                            .+++.|...        .++...+.+-+.+|+.-.|+
T Consensus       450 e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL  529 (696)
T KOG2471|consen  450 EKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKAL  529 (696)
T ss_pred             hhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHH
Confidence              0000001000000                            001111111        23344566677889999999


Q ss_pred             HHHHhhcccCCCChHHHHHHHHHHH-----HccccHHHHHHHHHHHH------hcc---------------CCC------
Q 004249          322 ILLTAIHWENVSDHAESINEIADLF-----KNRELYSTALKYYHMLE------ANA---------------GVH------  369 (765)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~~~~------~~~---------------~~~------  369 (765)
                      ..-.+++..  ++-..++..+|.+|     +-..+..+|...+..-.      .+.               .+|      
T Consensus       530 ~~a~kLLq~--~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~  607 (696)
T KOG2471|consen  530 SAATKLLQL--ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTR  607 (696)
T ss_pred             HHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCc
Confidence            988888754  44456666666554     45667777776665411      000               011      


Q ss_pred             ----CC-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHhcCCCCC
Q 004249          370 ----ND-----GCLHLKIAECSLALKEREKSIIYFYKALQILE--DNIDARLTLASLLLEDAKDEEAISLLTPPMS  434 (765)
Q Consensus       370 ----~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  434 (765)
                          ..     ...++++|.++.-+|++++|...+..+..+-+  .++.+......+-..+|+...|...+++..-
T Consensus       608 q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~  683 (696)
T KOG2471|consen  608 QSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTH  683 (696)
T ss_pred             ccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhccc
Confidence                01     23568899999999999999999999988877  4556666666666778999999998877654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.71  E-value=4.5e-07  Score=91.31  Aligned_cols=114  Identities=18%  Similarity=0.196  Sum_probs=63.7

Q ss_pred             HHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 004249          136 DALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADV  215 (765)
Q Consensus       136 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  215 (765)
                      ...++++.|+..|++..+.+|+   +...++.++...++..+|+..+.+++...|.+...+...+..+...++++.|+.+
T Consensus       180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i  256 (395)
T PF09295_consen  180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI  256 (395)
T ss_pred             hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            3445555555555555554432   3344555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249          216 YRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILED  252 (765)
Q Consensus       216 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  252 (765)
                      .++++...|.+...|..|+.+|...|+++.|+..++.
T Consensus       257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  257 AKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            5555555555555555555555555555555554443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.71  E-value=3.3e-06  Score=77.39  Aligned_cols=195  Identities=18%  Similarity=0.117  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHH
Q 004249          494 HRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNR  573 (765)
Q Consensus       494 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  573 (765)
                      .+..++.-|....+.|++++|.+.|+.+....|.+ |-.+.....++- .+++.++++.|+...++.+..+|.++.+-..
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s-~~~~qa~l~l~y-A~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFS-PYSEQAQLDLAY-AYYKNGEYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cccHHHHHHHHH-HHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence            46678888899999999999999999999888653 223455555555 8999999999999999999999999877554


Q ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhC
Q 004249          574 YYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALG  653 (765)
Q Consensus       574 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  653 (765)
                      ++-....          .+              ...-...-.+.--..|+..|...+...||++.+-......-.-    
T Consensus       111 ~YlkgLs----------~~--------------~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~----  162 (254)
T COG4105         111 YYLKGLS----------YF--------------FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKL----  162 (254)
T ss_pred             HHHHHHH----------Hh--------------ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH----
Confidence            3321110          00              0001111223344688999999999999987654322221110    


Q ss_pred             cccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHHhchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccc
Q 004249          654 VRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSD  733 (765)
Q Consensus       654 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~  733 (765)
                                ..++             ..--..+|+-|..-|.+..|+.-++.+++..|+                  +.
T Consensus       163 ----------~d~L-------------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~------------------t~  201 (254)
T COG4105         163 ----------NDAL-------------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPD------------------TS  201 (254)
T ss_pred             ----------HHHH-------------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc------------------cc
Confidence                      0000             123477899999999999999999999998763                  23


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHH
Q 004249          734 LRREAAYNLHLIYKKSGAVDLARQVL  759 (765)
Q Consensus       734 ~~~ea~~nl~~iy~~~g~~~~A~~~l  759 (765)
                      ...+++..+..+|..-|-.++|...-
T Consensus       202 ~~~eaL~~l~eaY~~lgl~~~a~~~~  227 (254)
T COG4105         202 AVREALARLEEAYYALGLTDEAKKTA  227 (254)
T ss_pred             chHHHHHHHHHHHHHhCChHHHHHHH
Confidence            45789999999999999999887654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.70  E-value=4.9e-08  Score=72.77  Aligned_cols=66  Identities=17%  Similarity=0.183  Sum_probs=49.5

Q ss_pred             HHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249          102 YALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP  167 (765)
Q Consensus       102 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  167 (765)
                      +..|++++|+..|++++..+|++..+++.+|.++...|++++|...+.+++..+|+++.++..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            567777788888888877777777777778888888888888888887777777777666665554

...

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.69  E-value=8.8e-09  Score=96.01  Aligned_cols=245  Identities=12%  Similarity=-0.047  Sum_probs=154.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 004249          128 YHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG  207 (765)
Q Consensus       128 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  207 (765)
                      ....|.-|+++|.|++|+.+|.+++..+|.++..+.+.+.+|+++..|..|..-+..++.++.....+|...+.+-..+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            44568888888888888888888888888888888888888888888888888888888887777788888888888888


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 004249          208 NFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIE  287 (765)
Q Consensus       208 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  287 (765)
                      ...+|.+.++.++++.|++.+....++.+-    ...++.    -+.+..|....  +                 ..-..
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~----Sl~E~~----I~~KsT~G~~~--A-----------------~Q~~~  232 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLARIN----SLRERK----IATKSTPGFTP--A-----------------RQGMI  232 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHHhc----chHhhh----HHhhcCCCCCc--c-----------------ccchh
Confidence            888888888888888888766544443332    222111    11222222221  1                 11111


Q ss_pred             HHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccC
Q 004249          288 LVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAG  367 (765)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  367 (765)
                      +++..            -.-|..+...|.++.++.++..-+... ..+.....+ +..+.+.-+++.++.-..+.+..  
T Consensus       233 Q~l~~------------K~~G~~Fsk~~~~~~~i~~~~~~~A~~-~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~--  296 (536)
T KOG4648|consen  233 QILPI------------KKPGYKFSKKAMRSVPVVDVVSPRATI-DDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNP--  296 (536)
T ss_pred             hhccc------------cCcchhhhhhhccccceeEeecccccc-CccccCccc-HHHHHHHhhcchhHHHHHHhcCC--
Confidence            11110            012333455566666666555432221 111111112 45556666777787777777666  


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004249          368 VHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASL  415 (765)
Q Consensus       368 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  415 (765)
                      +|.........+.+-.-.|...++...++.++.+.|.+..+...+...
T Consensus       297 ~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr~  344 (536)
T KOG4648|consen  297 KPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETRK  344 (536)
T ss_pred             CCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhhhh
Confidence            555444455556666667778888899999999988876655554443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.69  E-value=5.3e-07  Score=90.82  Aligned_cols=121  Identities=23%  Similarity=0.304  Sum_probs=110.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249           99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWA  178 (765)
Q Consensus        99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A  178 (765)
                      ..+...++++.|+.+|++..+.+|   ++...++.++...++..+|+..+.+++...|.+...+...+..+...++++.|
T Consensus       177 ~~l~~t~~~~~ai~lle~L~~~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA  253 (395)
T PF09295_consen  177 KYLSLTQRYDEAIELLEKLRERDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA  253 (395)
T ss_pred             HHHhhcccHHHHHHHHHHHHhcCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence            445567899999999999988775   47778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004249          179 MSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL  222 (765)
Q Consensus       179 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  222 (765)
                      +.+.++++...|.+...|..|+.+|...|+++.|+..+..+--.
T Consensus       254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            99999999999999999999999999999999999888765433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.67  E-value=5.8e-07  Score=74.86  Aligned_cols=84  Identities=17%  Similarity=0.061  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH---HHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS---SLWKL  164 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~  164 (765)
                      ...++..|...++.|+|++|++.|+.+....|..+   .+.+.+|.+|+..|++++|+..+++.++++|.++   .+++.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            45678889999999999999999999998888654   7889999999999999999999999999998876   57777


Q ss_pred             HHHHHHHcCC
Q 004249          165 IFPWLIEQGD  174 (765)
Q Consensus       165 la~~~~~~g~  174 (765)
                      .|.+++.+..
T Consensus        90 ~gL~~~~~~~   99 (142)
T PF13512_consen   90 RGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHhh
Confidence            8888777654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.66  E-value=5.5e-07  Score=83.38  Aligned_cols=107  Identities=21%  Similarity=0.147  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CHHHHHHH
Q 004249           92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDALGNTAKAMGCYWLAACYKQK---DSSLWKLI  165 (765)
Q Consensus        92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~l  165 (765)
                      ...+..|..++..|+|..|...|...++..|++.   .+++.||.+++.+|+++.|...|..+.+..|+   -+++++.+
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            3378889999999999999999999999999764   89999999999999999999999999887665   45889999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 004249          166 FPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFH  198 (765)
Q Consensus       166 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  198 (765)
                      |.+...+|+.++|...|+++++..|+...+...
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            999999999999999999999999988766443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.60  E-value=1.1e-06  Score=75.81  Aligned_cols=106  Identities=21%  Similarity=0.117  Sum_probs=64.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249          130 ILGLVHDALGNTAKAMGCYWLAACYKQKDS-----SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV  204 (765)
Q Consensus       130 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  204 (765)
                      .-|.-++..|+|.+|..-|..++.+.|..+     ..+.+.|.+.++++.++.|+..+.++++++|.+..++...+.+|.
T Consensus       100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye  179 (271)
T KOG4234|consen  100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE  179 (271)
T ss_pred             HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence            345556666666666666666666655433     234455666666666666666666666666666666666666666


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004249          205 ELGNFQRAADVYRQMVQLCPENIEALKMGAK  235 (765)
Q Consensus       205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  235 (765)
                      ....+++|+..|.++++.+|..-.+....++
T Consensus       180 k~ek~eealeDyKki~E~dPs~~ear~~i~r  210 (271)
T KOG4234|consen  180 KMEKYEEALEDYKKILESDPSRREAREAIAR  210 (271)
T ss_pred             hhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            6666666666666666666665544444443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.60  E-value=1.3e-06  Score=71.82  Aligned_cols=96  Identities=17%  Similarity=0.113  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 004249          160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND---FKLKFHLASLYVELGNFQRAADVYRQMVQLCPE---NIEALKMG  233 (765)
Q Consensus       160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l  233 (765)
                      .+++.+|.++-..|+.++|+.+|++++......   ..+++.+|..+...|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            356667777777777777777777777754333   456677777777777777777777777777666   55566666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Q 004249          234 AKLYQKSGQIESSVDILEDYLK  255 (765)
Q Consensus       234 a~~~~~~g~~~~A~~~~~~~~~  255 (765)
                      +.++...|+.++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            7777777777777777665553

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.58  E-value=1.8e-07  Score=69.70  Aligned_cols=57  Identities=26%  Similarity=0.517  Sum_probs=23.8

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 004249          172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE  228 (765)
Q Consensus       172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  228 (765)
                      .|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~   60 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE   60 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence            344444444444444444444444444444444444444444444444444444333

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.57  E-value=8.9e-06  Score=69.60  Aligned_cols=156  Identities=15%  Similarity=0.032  Sum_probs=126.0

Q ss_pred             HHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHcccc
Q 004249          272 MLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNREL  351 (765)
Q Consensus       272 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  351 (765)
                      ...+.=+++....-..+.+..     .....-.+.++......|++.+|...|++++......++..+..+++..+..++
T Consensus        65 a~~q~ldP~R~~Rea~~~~~~-----ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~  139 (251)
T COG4700          65 ALQQKLDPERHLREATEELAI-----APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE  139 (251)
T ss_pred             HHHHhcChhHHHHHHHHHHhh-----chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence            333333444444444444444     224556788999999999999999999999887778889999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCC
Q 004249          352 YSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTP  431 (765)
Q Consensus       352 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  431 (765)
                      +..|...++++.+.......+.....+|+.+...|.+.+|...|+.++...|+ +.+....+..+..+|+.++|...+..
T Consensus       140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            99999999999988433456778889999999999999999999999999886 77888899999999998888776644


Q ss_pred             CC
Q 004249          432 PM  433 (765)
Q Consensus       432 ~~  433 (765)
                      ..
T Consensus       219 v~  220 (251)
T COG4700         219 VV  220 (251)
T ss_pred             HH
Confidence            43

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.54  E-value=3.9e-05  Score=69.62  Aligned_cols=137  Identities=14%  Similarity=0.086  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhc----cCCCCCHHHHHHH
Q 004249          303 LKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEAN----AGVHNDGCLHLKI  378 (765)
Q Consensus       303 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l  378 (765)
                      +.+.+..++...|.|.-....+.++++.+++..+.....+|.+-++.|+.+.|..+|+++.+.    .....+..+..+.
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            455667778888899999999999988888888999999999999999999999999865543    1123345677788


Q ss_pred             HHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccc
Q 004249          379 AECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKY  439 (765)
Q Consensus       379 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  439 (765)
                      +.++...+++..|...|.+++..+|.++.+....+.++.-.|+...|++.++.+....|..
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            8889999999999999999999999999999999999999999999999999999988876

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.51  E-value=6.6e-07  Score=67.72  Aligned_cols=62  Identities=26%  Similarity=0.435  Sum_probs=29.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 004249          168 WLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA  229 (765)
Q Consensus       168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  229 (765)
                      +|...+++++|+.++++++..+|+++..+..+|.++...|++.+|+..|+++++..|+++.+
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            34444444444444444444444444444444444444444444444444444444444433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.51  E-value=3.2e-06  Score=78.39  Aligned_cols=103  Identities=19%  Similarity=0.106  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHH
Q 004249          128 YHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPN---DFKLKFHLAS  201 (765)
Q Consensus       128 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~  201 (765)
                      .|..+.-++..|+|..|...|...++..|+.   +.+++.||.+++.+|++++|...|..+++..|+   -+++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            4555666666666666666666666665553   255666666666666666666666666655443   2455666666


Q ss_pred             HHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 004249          202 LYVELGNFQRAADVYRQMVQLCPENIEAL  230 (765)
Q Consensus       202 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~  230 (765)
                      +...+|+.++|...|+++++..|+...+.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            66666666666666666666666655443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.51  E-value=1.9e-05  Score=67.60  Aligned_cols=149  Identities=13%  Similarity=0.050  Sum_probs=96.9

Q ss_pred             CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004249          140 NTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA-DPNDFKLKFHLASLYVELGNFQRAADVYRQ  218 (765)
Q Consensus       140 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  218 (765)
                      +++....-..+.+...|.. .-.+.||....+.|++.+|...|++++.- ...++..+..+++..+..+++..|...+++
T Consensus        71 dP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~  149 (251)
T COG4700          71 DPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED  149 (251)
T ss_pred             ChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            3444444444444444432 23456777777777777777777777653 456677777777777777777777777777


Q ss_pred             HHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          219 MVQLCPEN--IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       219 al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                      ..+.+|..  ++....+|..+...|++.+|...|+.++...|+..   .....+..+.++|+.++|...+..+.+.
T Consensus       150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~---ar~~Y~e~La~qgr~~ea~aq~~~v~d~  222 (251)
T COG4700         150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ---ARIYYAEMLAKQGRLREANAQYVAVVDT  222 (251)
T ss_pred             HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH---HHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            77766643  55666777777777777777777777777776643   3446677777777777766666555444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.50  E-value=7.4e-07  Score=67.47  Aligned_cols=67  Identities=21%  Similarity=0.193  Sum_probs=43.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 004249           99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLI  165 (765)
Q Consensus        99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l  165 (765)
                      .+++..++|++|+..+++++..+|+++..+...|.++..+|++.+|+..|+++++..|+++.+....
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            4456666666666666666666666666666666666666666666666666666666666554433

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=98.49  E-value=0.0015  Score=67.33  Aligned_cols=213  Identities=11%  Similarity=-0.051  Sum_probs=144.2

Q ss_pred             HHccccHHHHHHHHHHHHhccC------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 004249          346 FKNRELYSTALKYYHMLEANAG------VHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLED  419 (765)
Q Consensus       346 ~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  419 (765)
                      +.......+.+..++..+...-      .+.....|..........|+++...-.|++++--.....+.|...+.-....
T Consensus       265 ~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~  344 (577)
T KOG1258|consen  265 YQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESS  344 (577)
T ss_pred             HHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHc
Confidence            3334444555555665554321      1223456777777788889999999999998887777888899888888888


Q ss_pred             CCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHH
Q 004249          420 AKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLII  499 (765)
Q Consensus       420 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~  499 (765)
                      |+.+-|...+..+.+.....           .+.+...-+.+-...|++..|...++....+         -|....+..
T Consensus       345 ~~~~~~~~~~~~~~~i~~k~-----------~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e---------~pg~v~~~l  404 (577)
T KOG1258|consen  345 GDVSLANNVLARACKIHVKK-----------TPIIHLLEARFEESNGNFDDAKVILQRIESE---------YPGLVEVVL  404 (577)
T ss_pred             CchhHHHHHHHhhhhhcCCC-----------CcHHHHHHHHHHHhhccHHHHHHHHHHHHhh---------CCchhhhHH
Confidence            98888888877766654332           1356677777888888999999888877753         266666667


Q ss_pred             HHHHHHHhhhcHHHHHH---HHHHHHHhccCCCCchHHHH-HHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHH
Q 004249          500 DLCKTLASLHRYEDAIK---IINLILKLGYGKFPVEKEEL-YFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYY  575 (765)
Q Consensus       500 ~l~~~~~~~~~~~~A~~---~~~~al~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~  575 (765)
                      .-+....+.|+.+.+..   ++.....-.  ..+.-...+ .......+.-.++.+.|...+.++++..|++...+..+.
T Consensus       405 ~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~  482 (577)
T KOG1258|consen  405 RKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELI  482 (577)
T ss_pred             HHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHH
Confidence            77777788888888874   322222111  112222222 222233445578999999999999999999988888776


Q ss_pred             HHHhh
Q 004249          576 KLVSR  580 (765)
Q Consensus       576 ~~~~~  580 (765)
                      .+...
T Consensus       483 ~~~~~  487 (577)
T KOG1258|consen  483 RFELI  487 (577)
T ss_pred             HHHHh
Confidence            66543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.47  E-value=5.3e-06  Score=69.21  Aligned_cols=82  Identities=12%  Similarity=-0.043  Sum_probs=43.2

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF---KLKFHL  199 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l  199 (765)
                      ..++.-|...+..|+|++|++.|+.+....|..   ..+.+.++.+|+..+++++|+..+++-++++|.++   -+++..
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~   90 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR   90 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence            445555555555555555555555555544432   24455555555555555555555555555555443   344455


Q ss_pred             HHHHHHhC
Q 004249          200 ASLYVELG  207 (765)
Q Consensus       200 a~~~~~~g  207 (765)
                      |.++..+.
T Consensus        91 gL~~~~~~   98 (142)
T PF13512_consen   91 GLSYYEQD   98 (142)
T ss_pred             HHHHHHHh
Confidence            55444443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.43  E-value=0.006  Score=67.51  Aligned_cols=439  Identities=13%  Similarity=0.050  Sum_probs=248.4

Q ss_pred             HHHHHHHHHHHHhhCCC----chHHHHHHHHHH-HcCCHHHHHHHHHHHhccCC--CCH----HHHHHHHHHHHHcCCHH
Q 004249          108 EEAISVLHEVIRLEEEL----PNSYHILGLVHD-ALGNTAKAMGCYWLAACYKQ--KDS----SLWKLIFPWLIEQGDTT  176 (765)
Q Consensus       108 ~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~p--~~~----~~~~~la~~~~~~g~~~  176 (765)
                      ..|+.+++-+++..+-.    ..+++.+|.+++ ...+++.|..++.+++.+..  +..    .+.+.++.++.+.+...
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence            35677777777432222    357888899887 78999999999999987653  322    23455788888888777


Q ss_pred             HHHHHHHHHHhcCCC---CH-HHHHHH--HHHHHHhCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCCHH
Q 004249          177 WAMSCLSEAVKADPN---DF-KLKFHL--ASLYVELGNFQRAADVYRQMVQLC--PENIEA----LKMGAKLYQKSGQIE  244 (765)
Q Consensus       177 ~A~~~~~~al~~~p~---~~-~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~g~~~  244 (765)
                       |...+++.++....   .. ...+.+  .......+++..|++.++.+....  +.++.+    ....+.+....+..+
T Consensus       118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~  196 (608)
T PF10345_consen  118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD  196 (608)
T ss_pred             -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence             99999998886433   22 222222  333333479999999999988765  344332    234456666778888


Q ss_pred             HHHHHHHHHHhc------CCCC--CCHHHHHHHHH--HHHHhccHHHHHHHHHHHHHHhc---CCC--------------
Q 004249          245 SSVDILEDYLKG------HPTE--ADFGVIDLLAS--MLVQMNAYDRVLKHIELVDLVYY---SGK--------------  297 (765)
Q Consensus       245 ~A~~~~~~~~~~------~p~~--~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~---~~~--------------  297 (765)
                      ++++..+++...      +|..  +...+|..+..  ++...|+++.+...+++.-....   ...              
T Consensus       197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~  276 (608)
T PF10345_consen  197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLN  276 (608)
T ss_pred             hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEee
Confidence            888888877432      2222  12334444444  44556777777766665543321   110              


Q ss_pred             -----------Ccc----------HHHHHHHHHHHHhcCChhHHHHHHHhhcccC---C-------CCh-----------
Q 004249          298 -----------ELL----------LALKIKAGICHIQLGNTDKAEILLTAIHWEN---V-------SDH-----------  335 (765)
Q Consensus       298 -----------~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~-------~~~-----------  335 (765)
                                 +..          .-++..-|......+..++|.+++.+++..-   .       +..           
T Consensus       277 ~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~  356 (608)
T PF10345_consen  277 IGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWL  356 (608)
T ss_pred             cccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHH
Confidence                       000          0112333556667777778877777754211   0       000           


Q ss_pred             ----HHHHHHHHHHHHccccHHHHHHHHHHHHhccC-CC------CCHHHHHHHHHHHHHhccHHHHHHHHH--------
Q 004249          336 ----AESINEIADLFKNRELYSTALKYYHMLEANAG-VH------NDGCLHLKIAECSLALKEREKSIIYFY--------  396 (765)
Q Consensus       336 ----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~------~~~~~~~~la~~~~~~g~~~~A~~~~~--------  396 (765)
                          ..+.+..+...+-.+++..|...++.+..... .|      ..+..++..|..+...|+.+.|...|.        
T Consensus       357 ~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~  436 (608)
T PF10345_consen  357 RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCE  436 (608)
T ss_pred             HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhh
Confidence                12344556666788999999999987775421 12      246788999999999999999999998        


Q ss_pred             HHHHHcCCCH---HHHHHHHHHHHHcCCHHH----HHHhcCCCC---CccccccCcccchhhhhhhHHHHHHHHHHH--h
Q 004249          397 KALQILEDNI---DARLTLASLLLEDAKDEE----AISLLTPPM---SLENKYVNSDKTHAWWLNIRIKIKLCRIYK--A  464 (765)
Q Consensus       397 ~al~~~p~~~---~~~~~l~~~~~~~g~~~~----A~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~  464 (765)
                      .+....+.+.   -+..++..++...+....    ...++++..   ...+..        ..  ...+..+...+.  .
T Consensus       437 ~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~--------~~--~~a~~~~~~~~~~~~  506 (608)
T PF10345_consen  437 AANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNS--------YN--RTAYCLVLATYNTFE  506 (608)
T ss_pred             hhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccH--------HH--HHHHHHHHHHHhhCC
Confidence            3333333332   233345666665554222    444444332   222221        11  111112222221  1


Q ss_pred             cchhHHHHHhhHHHHhhhcccccccChhh-HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHH-----H
Q 004249          465 KGMIEGFVDMLLPLVCESSHQEETFNHEE-HRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELY-----F  538 (765)
Q Consensus       465 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~-----~  538 (765)
                      .-...++...+...++...+   ...... -.-++.-++..++ .|+..+.......+......+ |+....++     .
T Consensus       507 ~~~~ne~k~~l~~~L~~~~~---~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~-~d~~~~LW~~v~~~  581 (608)
T PF10345_consen  507 PFSSNEAKRHLQEALKMANN---KLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS-SDYSDQLWHLVASG  581 (608)
T ss_pred             ccccHHHHHHHHHHHHHHHH---hhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHH
Confidence            11222444444444432200   001111 1224445555566 788888777777777766432 22233333     3


Q ss_pred             HHhhcccccCChhhHHHHHHHHHH
Q 004249          539 LGAQIPCNTTDPKLWFDGVRFMVK  562 (765)
Q Consensus       539 ~~~~~~~~~g~~~~A~~~~~~~l~  562 (765)
                      +....+...|+.++|.....+.-.
T Consensus       582 ~l~~~~~~~G~~~ka~~~~~~~~~  605 (608)
T PF10345_consen  582 MLADSYEVQGDRDKAEEARQQLDR  605 (608)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHH
Confidence            444456678888888887766543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=98.40  E-value=1.6e-05  Score=80.14  Aligned_cols=112  Identities=16%  Similarity=0.154  Sum_probs=78.2

Q ss_pred             HHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249          115 HEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS--SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND  192 (765)
Q Consensus       115 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  192 (765)
                      ...++..|.+...+..-+..+...|+..+|..++..++...|...  .....+|.++.+.|...+|--++..|+...|.-
T Consensus       203 ~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~  282 (886)
T KOG4507|consen  203 HEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFF  282 (886)
T ss_pred             HHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccc
Confidence            344445555444444444445567888888888888887765543  456778888888888888887777777766655


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 004249          193 FKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN  226 (765)
Q Consensus       193 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  226 (765)
                      ..-++.++.++.+.|.+......|..+.+..|..
T Consensus       283 t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f  316 (886)
T KOG4507|consen  283 TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGF  316 (886)
T ss_pred             cccceeHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence            5557788888888888888888887777777654

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.39  E-value=2.4e-06  Score=73.47  Aligned_cols=96  Identities=19%  Similarity=0.274  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHHhch--
Q 004249          619 HQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGL--  696 (765)
Q Consensus       619 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--  696 (765)
                      |+.|.+.++..+..+|+|+..+..-|.+++..+.-+........+.+|++-++++..+.|+...+++++|.+|-.+|.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            678999999999999999999999999999988655545566788999999999999999999999999999988866  


Q ss_pred             ---------HHHHHHHHHHHHhhhhcc
Q 004249          697 ---------VSLAASYYEKVLAMYQKD  714 (765)
Q Consensus       697 ---------~~~A~~~y~k~l~~~~~~  714 (765)
                               +++|..+|+++...+|+|
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n  113 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNN  113 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                     778999999999999864

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.38  E-value=3.9e-07  Score=70.00  Aligned_cols=71  Identities=24%  Similarity=0.290  Sum_probs=58.3

Q ss_pred             chHHHhHHHHHHHhchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004249          681 QEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLR  760 (765)
Q Consensus       681 ~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~  760 (765)
                      ..++.++|.+|..+|++++|+.+|++++.+....              +........+.+|+|.+|...|+++.|++.++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--------------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~   70 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQL--------------GDDHPDTANTLNNLGECYYRLGDYEEALEYYQ   70 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--------------TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--------------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4689999999999999999999999999994321              01122347889999999999999999999999


Q ss_pred             hhcCC
Q 004249          761 DHCTF  765 (765)
Q Consensus       761 k~l~~  765 (765)
                      +.+.|
T Consensus        71 ~al~i   75 (78)
T PF13424_consen   71 KALDI   75 (78)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            98753

...

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.38  E-value=5.4e-06  Score=71.74  Aligned_cols=109  Identities=14%  Similarity=0.020  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc-----hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249           93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELP-----NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP  167 (765)
Q Consensus        93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  167 (765)
                      .+-..|+.++..|+|++|...|..++...|..+     ..|.+.|.+.++++.++.|+..+.++++++|.+..++...|.
T Consensus        97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe  176 (271)
T KOG4234|consen   97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE  176 (271)
T ss_pred             HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence            344557777778888888888888887777654     355667777778888888888888888888877777777788


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004249          168 WLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLAS  201 (765)
Q Consensus       168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  201 (765)
                      +|.++..+++|+.-|+++++.+|....+.-.++.
T Consensus       177 ayek~ek~eealeDyKki~E~dPs~~ear~~i~r  210 (271)
T KOG4234|consen  177 AYEKMEKYEEALEDYKKILESDPSRREAREAIAR  210 (271)
T ss_pred             HHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            8888888888888888888877766555444433

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=98.38  E-value=0.0047  Score=63.88  Aligned_cols=381  Identities=12%  Similarity=-0.010  Sum_probs=251.8

Q ss_pred             HHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHH
Q 004249          108 EEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLI-FPWLIEQGDTTWAMSCLSEAV  186 (765)
Q Consensus       108 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al  186 (765)
                      +.+...|...+...|.....|...|..-.+.|..+.+.+.|++++.--|-....|..+ +.+-...|+...-...|++|.
T Consensus        62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~  141 (577)
T KOG1258|consen   62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK  141 (577)
T ss_pred             HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            5566677778888899889999999999999999999999999999999888888764 444456778888888999998


Q ss_pred             hcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------cCCHHHHHHHHHHHHhc-
Q 004249          187 KADPND---FKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK------SGQIESSVDILEDYLKG-  256 (765)
Q Consensus       187 ~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~g~~~~A~~~~~~~~~~-  256 (765)
                      .....+   ...|-.....-..++++..-..+|++.++.--.....++..-.-+..      ....+++++.-...... 
T Consensus       142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~  221 (577)
T KOG1258|consen  142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS  221 (577)
T ss_pred             HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh
Confidence            875433   34555555566778889999999999887532222222111111111      12233333222222110 


Q ss_pred             --------------------CCCCCCHHHHHHHH-------HHHHHhccHHHHHHHHHHHHHHh----cCCCCccHHHHH
Q 004249          257 --------------------HPTEADFGVIDLLA-------SMLVQMNAYDRVLKHIELVDLVY----YSGKELLLALKI  305 (765)
Q Consensus       257 --------------------~p~~~~~~~~~~l~-------~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~  305 (765)
                                          .|.......-..+.       .++.......+.+..++..+...    .+..+.....|.
T Consensus       222 ~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~  301 (577)
T KOG1258|consen  222 KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWR  301 (577)
T ss_pred             hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHH
Confidence                                01110000000111       12222223333333444443330    112233344566


Q ss_pred             HHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHh
Q 004249          306 KAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLAL  385 (765)
Q Consensus       306 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  385 (765)
                      .........|+++...-.|++++--. ......|...+......|+.+-|-..+..+.++. .|..+.++..-+..-...
T Consensus       302 ~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~f~e~~  379 (577)
T KOG1258|consen  302 YYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEARFEESN  379 (577)
T ss_pred             HHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHHHHHhh
Confidence            66777789999999999999986544 5668899999999988899999999998888876 788889999999999999


Q ss_pred             ccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHH---HhcCCCCCccccccCcccchhhhhhhHHHHHHHHHH
Q 004249          386 KEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAI---SLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIY  462 (765)
Q Consensus       386 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  462 (765)
                      |++..|...++++.+..|+...+-..-+....+.|+.+.+.   .++..........         ..-...+...++..
T Consensus       380 ~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~---------~i~~~l~~~~~r~~  450 (577)
T KOG1258|consen  380 GNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENN---------GILEKLYVKFARLR  450 (577)
T ss_pred             ccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCc---------chhHHHHHHHHHHH
Confidence            99999999999999988999999888888899999998888   4443333221111         11124444555544


Q ss_pred             Hh-cchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhh
Q 004249          463 KA-KGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASL  508 (765)
Q Consensus       463 ~~-~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~  508 (765)
                      .. .++.+.|...+.+++.         ..|++...+..+.......
T Consensus       451 ~~i~~d~~~a~~~l~~~~~---------~~~~~k~~~~~~~~~~~~~  488 (577)
T KOG1258|consen  451 YKIREDADLARIILLEAND---------ILPDCKVLYLELIRFELIQ  488 (577)
T ss_pred             HHHhcCHHHHHHHHHHhhh---------cCCccHHHHHHHHHHHHhC
Confidence            33 5667778877777765         5677776666666554433

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=0.0099  Score=64.78  Aligned_cols=364  Identities=15%  Similarity=0.116  Sum_probs=196.4

Q ss_pred             cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH
Q 004249           88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKL  164 (765)
Q Consensus        88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~  164 (765)
                      +|+.....-  .+++..+-..+-++++++++-.+....   .....+.... -.-+.....++..+.-..+..      .
T Consensus       983 dPe~vS~tV--kAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~YI~rLdnyDa~------~ 1053 (1666)
T KOG0985|consen  983 DPEEVSVTV--KAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTA-IKADRTRVMEYINRLDNYDAP------D 1053 (1666)
T ss_pred             ChHHHHHHH--HHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHH-hhcChHHHHHHHHHhccCCch------h
Confidence            444444433  347777888888888888764332211   1111121111 223455556666655433311      2


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004249          165 IFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE  244 (765)
Q Consensus       165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  244 (765)
                      +|.+....+-+++|...|++-    .-+..+...+   ....+..+.|.++.+++     +.+.+|..+|....+.|...
T Consensus      1054 ia~iai~~~LyEEAF~ifkkf----~~n~~A~~VL---ie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF----DMNVSAIQVL---IENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHHh----cccHHHHHHH---HHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence            455556666677777777652    1122222111   22345566666665554     44567777777777777777


Q ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHH
Q 004249          245 SSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILL  324 (765)
Q Consensus       245 ~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  324 (765)
                      +|++.|-++     +++.  .+.....+..+.|.|++-+.++..+.+...     .+.+-..+..+|.+.++..+-.+++
T Consensus      1122 dAieSyika-----dDps--~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-----E~~id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1122 DAIESYIKA-----DDPS--NYLEVIDVASRTGKYEDLVKYLLMARKKVR-----EPYIDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred             HHHHHHHhc-----CCcH--HHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-----CccchHHHHHHHHHhchHHHHHHHh
Confidence            777776553     2232  455666777777777777777766665521     1112223344455555554443332


Q ss_pred             HhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc--
Q 004249          325 TAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL--  402 (765)
Q Consensus       325 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--  402 (765)
                      ..      |+.+ -....|.-++..|.|+.|.-+|..+          .-|..++..+..+|+|+.|...-+++-...  
T Consensus      1190 ~g------pN~A-~i~~vGdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktW 1252 (1666)
T KOG0985|consen 1190 AG------PNVA-NIQQVGDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDAARKANSTKTW 1252 (1666)
T ss_pred             cC------CCch-hHHHHhHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHH
Confidence            21      2222 2334556666666666665555322          234555666666666666665555542210  


Q ss_pred             -------------------C----CCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHH
Q 004249          403 -------------------E----DNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLC  459 (765)
Q Consensus       403 -------------------p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  459 (765)
                                         .    -..+-+-.+...|...|-+++-+.+++.++......            ...+..+|
T Consensus      1253 K~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH------------MgmfTELa 1320 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAH------------MGMFTELA 1320 (1666)
T ss_pred             HHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH------------HHHHHHHH
Confidence                               0    122444567778888999999999999888765544            34455666


Q ss_pred             HHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHH
Q 004249          460 RIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAI  515 (765)
Q Consensus       460 ~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  515 (765)
                      -+|.+-+ +++-.+.+.-.+ ....+..++..-+....|..+...|.+-..|+.|.
T Consensus      1321 iLYskyk-p~km~EHl~LFw-sRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1321 ILYSKYK-PEKMMEHLKLFW-SRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred             HHHHhcC-HHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            6665433 444444433332 11122223344455666777777777777776654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.28  E-value=3.6e-05  Score=61.65  Aligned_cols=97  Identities=12%  Similarity=0.041  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH----HHHHHHHHHH
Q 004249           94 MLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS----SLWKLIFPWL  169 (765)
Q Consensus        94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~  169 (765)
                      +-.+|..+...|+.+.|++.|.+++...|..+.+|.+.+..+.-+|+.++|+..+.+++++.....    .++...|.+|
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            345678888999999999999999999999999999999999999999999999999998863332    5677789999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCC
Q 004249          170 IEQGDTTWAMSCLSEAVKADP  190 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~~p  190 (765)
                      ...|+-+.|..-|+.+-++..
T Consensus       126 Rl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  126 RLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HHhCchHHHHHhHHHHHHhCC
Confidence            999999999999988877654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.26  E-value=1.4e-05  Score=79.87  Aligned_cols=68  Identities=15%  Similarity=0.090  Sum_probs=44.0

Q ss_pred             hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004249          121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSL---WKLIFPWLIEQGDTTWAMSCLSEAVKA  188 (765)
Q Consensus       121 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~  188 (765)
                      +|+++.+++++|.+|+.+|++++|+..|+++++++|++..+   |+++|.+|..+|++++|+.+++++++.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45666666666666666666666666666666666666533   666666666666666666666666664

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=0.0014  Score=59.81  Aligned_cols=190  Identities=17%  Similarity=0.139  Sum_probs=126.0

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q 004249          197 FHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM  276 (765)
Q Consensus       197 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~  276 (765)
                      ...|.+....|+..+.+.-+......       ..............+..+..+++-+..        +.+.++.++...
T Consensus       126 ~lhAe~~~~lgnpqesLdRl~~L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl~~--------Vmy~~~~~llG~  190 (366)
T KOG2796|consen  126 ILHAELQQYLGNPQESLDRLHKLKTV-------VSKILANLEQGLAEESSIRLWRKRLGR--------VMYSMANCLLGM  190 (366)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHH-------HHHHHHHHHhccchhhHHHHHHHHHHH--------HHHHHHHHHhcc
Confidence            44455556666666665555444321       111222222223334555555554332        455667777777


Q ss_pred             ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhccc-----CCCChHHHHHHHHHHHHcccc
Q 004249          277 NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWE-----NVSDHAESINEIADLFKNREL  351 (765)
Q Consensus       277 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~  351 (765)
                      |.|.-.+..+.+.++..   ++..+.....+|.+..+.||.+.|..+|+..-+.     ......-+..+.+.++.-.++
T Consensus       191 kEy~iS~d~~~~vi~~~---~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn  267 (366)
T KOG2796|consen  191 KEYVLSVDAYHSVIKYY---PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNN  267 (366)
T ss_pred             hhhhhhHHHHHHHHHhC---CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccc
Confidence            77777777777777652   2455566667777777777777777777743211     113334566677788888899


Q ss_pred             HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH
Q 004249          352 YSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNI  406 (765)
Q Consensus       352 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  406 (765)
                      +..|...+.+++..  +|.++.+..+.|.|....|+..+|++.++.+++..|...
T Consensus       268 ~a~a~r~~~~i~~~--D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  268 FAEAHRFFTEILRM--DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hHHHHHHHhhcccc--CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            99999999999888  889999999999999999999999999999999888744

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=1.6e-05  Score=71.13  Aligned_cols=102  Identities=15%  Similarity=0.157  Sum_probs=94.0

Q ss_pred             CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249           87 VCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIF  166 (765)
Q Consensus        87 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la  166 (765)
                      .++....+-.+|+.++...+|..|+..|.+++.++|..+..|...+.|++++.+++.+....+++++++|+....++.+|
T Consensus         6 ~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg   85 (284)
T KOG4642|consen    6 MSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLG   85 (284)
T ss_pred             cchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHH
Confidence            35556666778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhc
Q 004249          167 PWLIEQGDTTWAMSCLSEAVKA  188 (765)
Q Consensus       167 ~~~~~~g~~~~A~~~~~~al~~  188 (765)
                      ........+++|+..+.++..+
T Consensus        86 ~~~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   86 QWLLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             HHHHhhccccHHHHHHHHHHHH
Confidence            9999999999999999999665

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=98.21  E-value=0.00015  Score=73.41  Aligned_cols=116  Identities=14%  Similarity=0.073  Sum_probs=88.5

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 004249          147 CYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF--KLKFHLASLYVELGNFQRAADVYRQMVQLCP  224 (765)
Q Consensus       147 ~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  224 (765)
                      ....+++..|.+...+..-+..+...|+..+|..|+..++-..|...  .++..+|.++.+.|...+|--++..++.-.|
T Consensus       201 ~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~  280 (886)
T KOG4507|consen  201 LIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD  280 (886)
T ss_pred             HHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc
Confidence            34456666666555555555555678899999999998888765432  4678889999999998888888888887777


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249          225 ENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD  262 (765)
Q Consensus       225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  262 (765)
                      .-..-++.++.++...|.+......|..+.+..|....
T Consensus       281 ~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q  318 (886)
T KOG4507|consen  281 FFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ  318 (886)
T ss_pred             cccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence            76666888899999999999888888888888776543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=0.00052  Score=64.82  Aligned_cols=154  Identities=11%  Similarity=-0.037  Sum_probs=75.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCCH---HHHHHHHHHHHHcCC
Q 004249           99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACY-KQKDS---SLWKLIFPWLIEQGD  174 (765)
Q Consensus        99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~---~~~~~la~~~~~~g~  174 (765)
                      ...+..|++.+|...++++++..|.+.-++..--.+++.+|+...-...+++.+.. +|+.|   .+.-.++..+...|-
T Consensus       111 ai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~  190 (491)
T KOG2610|consen  111 AILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI  190 (491)
T ss_pred             HHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence            34444555555555555555555555555555555555555555555555555544 33332   222234444555555


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 004249          175 TTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN----IEALKMGAKLYQKSGQIESSVDIL  250 (765)
Q Consensus       175 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~  250 (765)
                      |++|.+..+++++++|.+..+....+.++...|++.++.++..+.-..-...    ..-|...+..+...+.|+.|+++|
T Consensus       191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            5555555555555555555555555555555555555555544432211100    111233344444455555555555


Q ss_pred             HH
Q 004249          251 ED  252 (765)
Q Consensus       251 ~~  252 (765)
                      .+
T Consensus       271 D~  272 (491)
T KOG2610|consen  271 DR  272 (491)
T ss_pred             HH
Confidence            44

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.17  E-value=9.5e-06  Score=81.10  Aligned_cols=69  Identities=17%  Similarity=0.077  Sum_probs=52.6

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004249          154 YKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKL---KFHLASLYVELGNFQRAADVYRQMVQL  222 (765)
Q Consensus       154 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~  222 (765)
                      .+|+++.+|+++|.++...|++++|+.+|+++++++|++..+   |+++|.+|..+|++++|+.++++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            357777777777777777777777777777777777777644   777777777777777777777777775

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.15  E-value=7.7e-05  Score=59.83  Aligned_cols=97  Identities=21%  Similarity=0.211  Sum_probs=71.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHH
Q 004249          129 HILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND----FKLKFHLASLYV  204 (765)
Q Consensus       129 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~  204 (765)
                      -..|......|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|+.-+++++++....    -.++...|.+|.
T Consensus        47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            3456667777888888888888888888888888888888888888888888888887764322    245677777788


Q ss_pred             HhCCHHHHHHHHHHHHHhCCC
Q 004249          205 ELGNFQRAADVYRQMVQLCPE  225 (765)
Q Consensus       205 ~~g~~~~A~~~~~~al~~~p~  225 (765)
                      .+|+.+.|...|+.+-++...
T Consensus       127 l~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  127 LLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HhCchHHHHHhHHHHHHhCCH
Confidence            888888887777777666443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=0.0017  Score=58.37  Aligned_cols=184  Identities=15%  Similarity=0.107  Sum_probs=132.7

Q ss_pred             HHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhhCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH--
Q 004249           89 PEIRRMLG-DASLHYALGRYEEAISVLHEVIRLEEE------LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS--  159 (765)
Q Consensus        89 ~~~~~~~~-~a~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~--  159 (765)
                      .+...++. -|+.|--.+++..|-..|.++-...-.      ....|...+.||.+ +++.+|+.++++++++..+..  
T Consensus        31 eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf  109 (288)
T KOG1586|consen   31 EEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRF  109 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHH
Confidence            34445544 456677778899998888888664321      23456666666655 699999999999998865433  


Q ss_pred             ----HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-
Q 004249          160 ----SLWKLIFPWLIEQ-GDTTWAMSCLSEAVKADPND------FKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI-  227 (765)
Q Consensus       160 ----~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-  227 (765)
                          ..+..+|.+|... .++++|+.+|+++-+-....      ..++...+..-...++|.+|+..|+++....-++. 
T Consensus       110 ~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L  189 (288)
T KOG1586|consen  110 TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL  189 (288)
T ss_pred             HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence                2344688888765 89999999999988764322      24567778888899999999999999987665553 


Q ss_pred             ------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 004249          228 ------EALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASML  273 (765)
Q Consensus       228 ------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~  273 (765)
                            ..++.-|.+++...+.-.+...+++..+.+|...+.+-...+..+.
T Consensus       190 LKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~  241 (288)
T KOG1586|consen  190 LKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLL  241 (288)
T ss_pred             HHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence                  2344556667777888888889999999999988765555554444

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=0.001  Score=59.73  Aligned_cols=124  Identities=15%  Similarity=0.183  Sum_probs=67.5

Q ss_pred             CHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHh
Q 004249          208 NFQRAADVYRQMVQLCPEN------IEALKMGAKLYQKS-GQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQM  276 (765)
Q Consensus       208 ~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~  276 (765)
                      +..+|+.++++++++..+-      ...+..+|.+|..- .++++|+.+|+++-+.......    -..+...+..-...
T Consensus        88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l  167 (288)
T KOG1586|consen   88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL  167 (288)
T ss_pred             ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence            5555555555555443322      12244667777654 7788888888887665443322    11233555666677


Q ss_pred             ccHHHHHHHHHHHHHHhcCCCCc---cHHHHHHHHHHHHhcCChhHHHHHHHhhcccC
Q 004249          277 NAYDRVLKHIELVDLVYYSGKEL---LLALKIKAGICHIQLGNTDKAEILLTAIHWEN  331 (765)
Q Consensus       277 ~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  331 (765)
                      ++|.+|+..|+++....-.+.-.   .-...+..|.|++-..+.-.+...+++....+
T Consensus       168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d  225 (288)
T KOG1586|consen  168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD  225 (288)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence            88888888888876651111111   11224455666666666555555555543333

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.08  E-value=3.4e-05  Score=66.51  Aligned_cols=53  Identities=28%  Similarity=0.423  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHhCCCCHH
Q 004249          176 TWAMSCLSEAVKADPNDFKLKFHLASLYVELGN-----------FQRAADVYRQMVQLCPENIE  228 (765)
Q Consensus       176 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~  228 (765)
                      ++|+.-|++++.++|+..++++.+|.+|...+.           |++|..+|+++...+|++..
T Consensus        52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence            455555666666666666666666666655432           45555555555555555543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.08  E-value=0.001  Score=66.93  Aligned_cols=61  Identities=21%  Similarity=0.336  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249          229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELV  289 (765)
Q Consensus       229 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  289 (765)
                      +...+|.+..+.|+.++|++.++.+++..|......+..++..++...+.|.++..++.+.
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            3445666666666666666666666665554333345556666666666666666665554

The molecular function of this protein is uncertain.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.06  E-value=0.0014  Score=59.31  Aligned_cols=233  Identities=14%  Similarity=0.040  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCC-----CChHHHHHHHHHHHHccccHHH
Q 004249          280 DRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENV-----SDHAESINEIADLFKNRELYST  354 (765)
Q Consensus       280 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~  354 (765)
                      .++.+...+....+.++.......+...+.++...+++++|...+.++.+...     -.-...+...+.+......+.+
T Consensus        10 ~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsE   89 (308)
T KOG1585|consen   10 SEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSE   89 (308)
T ss_pred             HHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHH
Confidence            34444444444444444445555566666667777777777777766653220     0112233344444455555566


Q ss_pred             HHHHHHHHHhcc---CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCC
Q 004249          355 ALKYYHMLEANA---GVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTP  431 (765)
Q Consensus       355 A~~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  431 (765)
                      +..+++++..+-   ..|+.+..-...+--.....++++|++.|++++.+-..+.              +...|.     
T Consensus        90 vvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d--------------r~~ma~-----  150 (308)
T KOG1585|consen   90 VVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD--------------RDQMAF-----  150 (308)
T ss_pred             HHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc--------------hHHHHH-----
Confidence            666665554330   0222222222222222333445555555555544322211              111111     


Q ss_pred             CCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcH
Q 004249          432 PMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRY  511 (765)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  511 (765)
                                           ..+...++++.+..++.+|...+.+-..-.   ...-..+.....++....++....+|
T Consensus       151 ---------------------el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~---~~~~~y~~~~k~~va~ilv~L~~~Dy  206 (308)
T KOG1585|consen  151 ---------------------ELYGKCSRVLVRLEKFTEAATAFLKEGVAA---DKCDAYNSQCKAYVAAILVYLYAHDY  206 (308)
T ss_pred             ---------------------HHHHHhhhHhhhhHHhhHHHHHHHHhhhHH---HHHhhcccHHHHHHHHHHHHhhHHHH
Confidence                                 122233444444444554444333322100   00002233444555556667777899


Q ss_pred             HHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHH
Q 004249          512 EDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGV  557 (765)
Q Consensus       512 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  557 (765)
                      ..|...++..-++.....|++...+..++.  .+..||.++....+
T Consensus       207 v~aekc~r~~~qip~f~~sed~r~lenLL~--ayd~gD~E~~~kvl  250 (308)
T KOG1585|consen  207 VQAEKCYRDCSQIPAFLKSEDSRSLENLLT--AYDEGDIEEIKKVL  250 (308)
T ss_pred             HHHHHHhcchhcCccccChHHHHHHHHHHH--HhccCCHHHHHHHH
Confidence            999999988777655555666666666665  46778877766554

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.03  E-value=0.00091  Score=60.41  Aligned_cols=123  Identities=11%  Similarity=0.101  Sum_probs=53.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHH
Q 004249          130 ILGLVHDALGNTAKAMGCYWLAACYKQKDS------SLWKLIFPWLIEQGDTTWAMSCLSEAVKA-----DPNDFKLKFH  198 (765)
Q Consensus       130 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~  198 (765)
                      .-+.+|...++|++|..++.++.+-..++.      .++-..+.+...+..+.++..+++++...     .|+....-..
T Consensus        36 kAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmale  115 (308)
T KOG1585|consen   36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALE  115 (308)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHH
Confidence            334455555555555555555553322211      12223334444445555555555555433     1222222222


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249          199 LASLYVELGNFQRAADVYRQMVQLCPEN------IEALKMGAKLYQKSGQIESSVDILED  252 (765)
Q Consensus       199 la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~  252 (765)
                      .+--....-++++|+.+|++++.+...+      .+.+...++++.+..++++|-..+.+
T Consensus       116 KAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK  175 (308)
T KOG1585|consen  116 KAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK  175 (308)
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence            2222333444555555555555443222      22334444555555555555544444

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.03  E-value=6.1e-06  Score=63.33  Aligned_cols=23  Identities=26%  Similarity=0.599  Sum_probs=8.9

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHH
Q 004249          197 FHLASLYVELGNFQRAADVYRQM  219 (765)
Q Consensus       197 ~~la~~~~~~g~~~~A~~~~~~a  219 (765)
                      ..+|.++...|++++|+.+++++
T Consensus        50 ~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen   50 NNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Confidence            33333333333333333333333

...

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=0.00064  Score=63.81  Aligned_cols=160  Identities=18%  Similarity=0.132  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH-HHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS-SLWKLIFPW  168 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~  168 (765)
                      .....+..+......|++.+|...|..++...|.+.++...++.|+...|+.+.|...+...-....+.. .........
T Consensus       133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l  212 (304)
T COG3118         133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL  212 (304)
T ss_pred             HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence            3344566677888888999999999999888888888888889999999998888888776432222111 111111122


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHH
Q 004249          169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE--NIEALKMGAKLYQKSGQIESS  246 (765)
Q Consensus       169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A  246 (765)
                      +.+.....+.. .+++.+..+|++.++.+.++..+...|+.+.|.+.+-..++.+..  +..+...+..++...|.-+.+
T Consensus       213 l~qaa~~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~  291 (304)
T COG3118         213 LEQAAATPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL  291 (304)
T ss_pred             HHHHhcCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence            33333333222 334455668888888888888888888888888888877776543  344555555555555544333


Q ss_pred             HHHH
Q 004249          247 VDIL  250 (765)
Q Consensus       247 ~~~~  250 (765)
                      ...+
T Consensus       292 ~~~~  295 (304)
T COG3118         292 VLAY  295 (304)
T ss_pred             HHHH
Confidence            3333

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.97  E-value=0.00017  Score=70.75  Aligned_cols=134  Identities=11%  Similarity=0.132  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004249          161 LWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE-LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK  239 (765)
Q Consensus       161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  239 (765)
                      +|..+.....+.+..+.|..+|.++.+..+-...+|...|.+-.. .++.+.|..+|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            566666777777778888888888886555567778888888666 4555558888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Q 004249          240 SGQIESSVDILEDYLKGHPTEA-DFGVIDLLASMLVQMNAYDRVLKHIELVDLVYY  294 (765)
Q Consensus       240 ~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  294 (765)
                      .|+.+.|..+|++++..-|... .-.+|......-...|+.+....+.+++.+.++
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~  138 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP  138 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence            8888888888888887766655 444777888888888888888888888887743

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.95  E-value=0.00048  Score=69.20  Aligned_cols=192  Identities=11%  Similarity=0.090  Sum_probs=95.1

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHH
Q 004249          201 SLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYD  280 (765)
Q Consensus       201 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~  280 (765)
                      .-..+..+...-++.-++|++++|+.+.++..|+.-  ...-..+|..+++++++.......      ........|..-
T Consensus       176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg------~s~~~~~~g~~~  247 (539)
T PF04184_consen  176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLG------KSQFLQHHGHFW  247 (539)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhc------hhhhhhcccchh
Confidence            333445556666666666666666666666555432  223345566666665554322111      000000001000


Q ss_pred             HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCC-ChHHHHHHHHHHHHccccHHHHHHHH
Q 004249          281 RVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVS-DHAESINEIADLFKNRELYSTALKYY  359 (765)
Q Consensus       281 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~  359 (765)
                      +       ...  ..+......+...+++|..+.|+.++|++.++.+++..+. ++..++.++..+++..+.|.++...+
T Consensus       248 e-------~~~--~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL  318 (539)
T PF04184_consen  248 E-------AWH--RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL  318 (539)
T ss_pred             h-------hhh--ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence            0       000  0011122344455666666666666666666666655433 24456666666666666666666666


Q ss_pred             HHHHhccCCCCCHHHHHHHHHHHHH-------------hcc---HHHHHHHHHHHHHHcCCCHHHHH
Q 004249          360 HMLEANAGVHNDGCLHLKIAECSLA-------------LKE---REKSIIYFYKALQILEDNIDARL  410 (765)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~la~~~~~-------------~g~---~~~A~~~~~~al~~~p~~~~~~~  410 (765)
                      .+.-++. -|..+...+..|.+-.+             .|-   -..|++.+.++++.+|..+....
T Consensus       319 ~kYdDi~-lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL  384 (539)
T PF04184_consen  319 AKYDDIS-LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL  384 (539)
T ss_pred             HHhcccc-CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence            6644332 34444444433332211             110   23467788888888888765443

The molecular function of this protein is uncertain.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.95  E-value=2.1e-05  Score=52.02  Aligned_cols=40  Identities=18%  Similarity=0.260  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249          127 SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIF  166 (765)
Q Consensus       127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la  166 (765)
                      ++..+|.+|...|++++|+..|+++++.+|+++.+|..+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            4444455555555555555555555555555554444444

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.95  E-value=2e-05  Score=52.08  Aligned_cols=42  Identities=21%  Similarity=0.218  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 004249          373 CLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLAS  414 (765)
Q Consensus       373 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  414 (765)
                      .++..+|.+|...|++++|+..|+++++.+|++++++..++.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            567788888888888888888888888888888888887765

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.95  E-value=1e-05  Score=50.04  Aligned_cols=32  Identities=34%  Similarity=0.615  Sum_probs=29.6

Q ss_pred             hHHHhHHHHHHHhchHHHHHHHHHHHHhhhhc
Q 004249          682 EALYNIARAYHHVGLVSLAASYYEKVLAMYQK  713 (765)
Q Consensus       682 ~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~  713 (765)
                      .+++++|.+|..+|++++|+.+|+++|+++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            68999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.91  E-value=0.031  Score=55.58  Aligned_cols=473  Identities=10%  Similarity=0.029  Sum_probs=231.1

Q ss_pred             HHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 004249          114 LHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF  193 (765)
Q Consensus       114 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  193 (765)
                      +++-++.+|++...|+.|...+..+|.+++-.+.+++...-.|-.+.+|......-...+++......|.+++...- +.
T Consensus        31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l-~l  109 (660)
T COG5107          31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL-NL  109 (660)
T ss_pred             HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-cH
Confidence            34456788999999999999999999999999999999988888888887766555667788888888888876432 34


Q ss_pred             HHHHHHHHHHHHhC-----C----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHh
Q 004249          194 KLKFHLASLYVELG-----N----FQRAADVYRQMVQLCPENIEALKMGAKLYQ---------KSGQIESSVDILEDYLK  255 (765)
Q Consensus       194 ~~~~~la~~~~~~g-----~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~~~  255 (765)
                      +.|...-..-.+.+     +    .-+|.+..-.+.-..|.....|...+..+.         .+.+.+.-...|.+++.
T Consensus       110 dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~  189 (660)
T COG5107         110 DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ  189 (660)
T ss_pred             hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc
Confidence            44443332222222     1    223333333333345666666666555443         23344555566666665


Q ss_pred             cCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHH-----hhccc
Q 004249          256 GHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLT-----AIHWE  330 (765)
Q Consensus       256 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-----~~~~~  330 (765)
                      .--++        +-.++..-.+++.-+.-+. +.+..+...|....+.    ..+....+....+....     .+-+.
T Consensus       190 tP~~n--------leklW~dy~~fE~e~N~~T-arKfvge~sp~ym~ar----~~yqe~~nlt~Gl~v~~~~~~Rt~nK~  256 (660)
T COG5107         190 TPMGN--------LEKLWKDYENFELELNKIT-ARKFVGETSPIYMSAR----QRYQEIQNLTRGLSVKNPINLRTANKA  256 (660)
T ss_pred             Ccccc--------HHHHHHHHHHHHHHHHHHH-HHHHhcccCHHHHHHH----HHHHHHHHHhccccccCchhhhhhccc
Confidence            32222        2222211112221111110 0000000001000000    00111111111110000     00000


Q ss_pred             CCCChHHHHHHHHHHHHc------cccHHHHHH-HHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcC
Q 004249          331 NVSDHAESINEIADLFKN------RELYSTALK-YYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILE  403 (765)
Q Consensus       331 ~~~~~~~~~~~la~~~~~------~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  403 (765)
                      . .....-|.+....-..      .+-..+-+. .+++++..  -+-.+++|+.........++-+.|+...++++...|
T Consensus       257 ~-r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y--~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sp  333 (660)
T COG5107         257 A-RTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY--FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSP  333 (660)
T ss_pred             c-ccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCC
Confidence            0 0000012222221111      111222111 23445544  566677777777777777777777777766665544


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHh---cchhHHHHHhhHHHHh
Q 004249          404 DNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKA---KGMIEGFVDMLLPLVC  480 (765)
Q Consensus       404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~  480 (765)
                      .   ..+.++..|....+-++...+|+++...-..                .+..+..-..   .|+++...+.+.+-..
T Consensus       334 s---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r----------------~ys~~~s~~~s~~D~N~e~~~Ell~kr~~  394 (660)
T COG5107         334 S---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR----------------KYSMGESESASKVDNNFEYSKELLLKRIN  394 (660)
T ss_pred             c---hheeHHHHHhhcccHHHHhhhHHHHHHHHHH----------------HHhhhhhhhhccccCCccccHHHHHHHHh
Confidence            4   5666777776666666665555544321000                0000000000   1112111111111110


Q ss_pred             hhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHH
Q 004249          481 ESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFM  560 (765)
Q Consensus       481 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~  560 (765)
                                  .-.-++.-+-....+..-.+.|..+|.++.+..-.  .. ...++.... -++..|++.-|...|.-.
T Consensus       395 ------------k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~--~h-~vyi~~A~~-E~~~~~d~~ta~~ifelG  458 (660)
T COG5107         395 ------------KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIV--GH-HVYIYCAFI-EYYATGDRATAYNIFELG  458 (660)
T ss_pred             ------------hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC--Cc-ceeeeHHHH-HHHhcCCcchHHHHHHHH
Confidence                        00111222222233445567788888887764411  11 111222222 456689999999999999


Q ss_pred             HHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCC--CCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChH
Q 004249          561 VKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDF--VPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPL  638 (765)
Q Consensus       561 l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~  638 (765)
                      +..+|+++..-+.|...+...++. +.+...+.+.+.+-...  -..+...-..-..-|+...++..=++.....|...+
T Consensus       459 l~~f~d~~~y~~kyl~fLi~inde-~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~  537 (660)
T COG5107         459 LLKFPDSTLYKEKYLLFLIRINDE-ENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENL  537 (660)
T ss_pred             HHhCCCchHHHHHHHHHHHHhCcH-HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence            999999988888777777666664 35555555444332111  111111111123346666666666777777776544


Q ss_pred             H
Q 004249          639 I  639 (765)
Q Consensus       639 ~  639 (765)
                      +
T Consensus       538 ~  538 (660)
T COG5107         538 I  538 (660)
T ss_pred             H
Confidence            3

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.91  E-value=0.00027  Score=69.38  Aligned_cols=131  Identities=13%  Similarity=0.079  Sum_probs=57.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 004249          129 HILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE-QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG  207 (765)
Q Consensus       129 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  207 (765)
                      ..+.....+.+..+.|...|.++.+..+....+|...|.+-.. .++.+.|..+|+.+++..|.+...|......+...|
T Consensus         5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~   84 (280)
T PF05843_consen    5 IQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN   84 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC
Confidence            3333334444444445555555443333334444444444333 233333555555555544544444444444444455


Q ss_pred             CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249          208 NFQRAADVYRQMVQLCPENI---EALKMGAKLYQKSGQIESSVDILEDYLKGHPT  259 (765)
Q Consensus       208 ~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  259 (765)
                      +.+.|..+|++++..-|...   .+|......-...|+.+....+.+++.+..|.
T Consensus        85 d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   85 DINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             -HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            55555555555544433322   23444444444445555555555555444444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.90  E-value=0.033  Score=55.54  Aligned_cols=443  Identities=11%  Similarity=0.006  Sum_probs=227.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc-----hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249           93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELP-----NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP  167 (765)
Q Consensus        93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  167 (765)
                      .+..+|..+-.++++.+|..+|.++.+...+.+     +++..+....+-+++.+.-...+...-+..|..+......|.
T Consensus         8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L   87 (549)
T PF07079_consen    8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL   87 (549)
T ss_pred             HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            445778999999999999999999988766554     333344444445577777777776666777888888888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC--CH-------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-C----CCH
Q 004249          168 WLIEQGDTTWAMSCLSEAVKADPN--DF-------------KLKFHLASLYVELGNFQRAADVYRQMVQLC-P----ENI  227 (765)
Q Consensus       168 ~~~~~g~~~~A~~~~~~al~~~p~--~~-------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p----~~~  227 (765)
                      ..++.+.+.+|++.+......-..  .+             ..-...+.++...|.+.++...+.+.+..- |    -+.
T Consensus        88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~  167 (549)
T PF07079_consen   88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS  167 (549)
T ss_pred             HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence            999999999999998776654111  11             112346788899999999999999987642 2    233


Q ss_pred             HHHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcc-------------------------
Q 004249          228 EALK----MGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNA-------------------------  278 (765)
Q Consensus       228 ~~~~----~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~-------------------------  278 (765)
                      +.+.    .+|+.|+            -++.+....+.-+ -++.++..|.+.=.                         
T Consensus       168 d~yd~~vlmlsrSYf------------LEl~e~~s~dl~p-dyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlf  234 (549)
T PF07079_consen  168 DMYDRAVLMLSRSYF------------LELKESMSSDLYP-DYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLF  234 (549)
T ss_pred             HHHHHHHHHHhHHHH------------HHHHHhcccccCh-HHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHH
Confidence            3333    3344333            2221111111111 12222222221110                         


Q ss_pred             --HHHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC----CCChHHHHHHHHHHHHccc
Q 004249          279 --YDRVLKHIELVDLVYYSG--KELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN----VSDHAESINEIADLFKNRE  350 (765)
Q Consensus       279 --~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g  350 (765)
                        +.+-+..+-+++..+...  +|...-+...+..-  -..+.+++....+.+....    ...-...+..+-....+.+
T Consensus       235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~--f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~  312 (549)
T PF07079_consen  235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQ--FMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV  312 (549)
T ss_pred             hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHH--HhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence              011111111122221110  11111111111111  1113444444433332110    0011122222333446778


Q ss_pred             cHHHHHHHHHHHHhccCCCCCHHHHHHHH-------HHHH-Hhc---cHHHHHHHHHHHHHHcCCCH---HHHHHHHHHH
Q 004249          351 LYSTALKYYHMLEANAGVHNDGCLHLKIA-------ECSL-ALK---EREKSIIYFYKALQILEDNI---DARLTLASLL  416 (765)
Q Consensus       351 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la-------~~~~-~~g---~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~  416 (765)
                      +...|..++.-+..+  +|+.. ....+.       .+.. .-.   +...=+..++.+-..+-+..   .-...-|.-+
T Consensus       313 ~T~~a~q~l~lL~~l--dp~~s-vs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~l  389 (549)
T PF07079_consen  313 QTEEAKQYLALLKIL--DPRIS-VSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHL  389 (549)
T ss_pred             hHHHHHHHHHHHHhc--CCcch-hhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence            888888888877666  67654 111111       1111 000   11111223333332222221   3344456667


Q ss_pred             HHcCC-HHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHH---HHhhhcccccccChh
Q 004249          417 LEDAK-DEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLP---LVCESSHQEETFNHE  492 (765)
Q Consensus       417 ~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~---~~~~~~~l~~~~~~~  492 (765)
                      .+.|. -++|+++++.++...+...         .-..+...+..-.+++---..++..+..   .+ ...++.++....
T Consensus       390 W~~g~~dekalnLLk~il~ft~yD~---------ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi-~e~gl~~i~i~e  459 (549)
T PF07079_consen  390 WEIGQCDEKALNLLKLILQFTNYDI---------ECENIVFLFVKQAYKQALSMHAIPRLLKLEDFI-TEVGLTPITISE  459 (549)
T ss_pred             HhcCCccHHHHHHHHHHHHhccccH---------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HhcCCCcccccH
Confidence            77777 7889999988877655540         0000111111111111111111111111   11 111233333333


Q ss_pred             hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhH
Q 004249          493 EHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWN  572 (765)
Q Consensus       493 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  572 (765)
                      ....-...=|.-++..|++.++.-+-.-..++.    | .+...+.+|. |.+...+|.+|..++..+    |.+...++
T Consensus       460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~ia----P-S~~~~RLlGl-~l~e~k~Y~eA~~~l~~L----P~n~~~~d  529 (549)
T PF07079_consen  460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA----P-SPQAYRLLGL-CLMENKRYQEAWEYLQKL----PPNERMRD  529 (549)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC----C-cHHHHHHHHH-HHHHHhhHHHHHHHHHhC----CCchhhHH
Confidence            333344444555788999999998888777777    4 5556555555 999999999999987654    55655555


Q ss_pred             H
Q 004249          573 R  573 (765)
Q Consensus       573 ~  573 (765)
                      .
T Consensus       530 s  530 (549)
T PF07079_consen  530 S  530 (549)
T ss_pred             H
Confidence            3

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.87  E-value=1.6e-05  Score=48.69  Aligned_cols=34  Identities=26%  Similarity=0.384  Sum_probs=31.0

Q ss_pred             HHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHH
Q 004249          703 YYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQ  757 (765)
Q Consensus       703 ~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~  757 (765)
                      .|+|+|+++|+|                     +++++|||.+|...|+++.|++
T Consensus         1 ~y~kAie~~P~n---------------------~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNN---------------------AEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCC---------------------HHHHHHHHHHHHHCcCHHhhcC
Confidence            389999999976                     7999999999999999999974

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=4.6e-05  Score=68.25  Aligned_cols=92  Identities=15%  Similarity=0.117  Sum_probs=73.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004249          165 IFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE  244 (765)
Q Consensus       165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  244 (765)
                      -|..++...+|..|+.+|.+++.++|..+..+.+.+.++++..+++.+....++++++.|+....++.+|........++
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~   95 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD   95 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence            45556666678888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhc
Q 004249          245 SSVDILEDYLKG  256 (765)
Q Consensus       245 ~A~~~~~~~~~~  256 (765)
                      +|+..+.++..+
T Consensus        96 eaI~~Lqra~sl  107 (284)
T KOG4642|consen   96 EAIKVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHHHHH
Confidence            888888887554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.00037  Score=65.76  Aligned_cols=118  Identities=11%  Similarity=-0.020  Sum_probs=55.1

Q ss_pred             HHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCH---HHHHHHHHHHHHhCCH
Q 004249          134 VHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA-DPNDF---KLKFHLASLYVELGNF  209 (765)
Q Consensus       134 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~---~~~~~la~~~~~~g~~  209 (765)
                      +....|++.+|...+++.++-.|.+.-++..--.+++..|+...-...+++++.. +|+.|   -+.-.++..+...|-|
T Consensus       112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence            3344445555555555555544555444444444444455555444455444443 33321   2222333344444555


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004249          210 QRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILE  251 (765)
Q Consensus       210 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  251 (765)
                      ++|.+..+++++++|.+..+...++.++...|++.++.+.+.
T Consensus       192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~  233 (491)
T KOG2610|consen  192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY  233 (491)
T ss_pred             hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence            555555555555555554444445555555555554444443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.84  E-value=0.045  Score=57.37  Aligned_cols=237  Identities=15%  Similarity=0.159  Sum_probs=137.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 004249          158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF---------KLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE  228 (765)
Q Consensus       158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  228 (765)
                      ++..|..+|......-.++-|...|-+.-.. |.-.         .--...+.+-.--|++++|.+.|-.+-+.      
T Consensus       691 HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr------  763 (1189)
T KOG2041|consen  691 HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR------  763 (1189)
T ss_pred             chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh------
Confidence            6677777777776666666666666554321 1110         00123344445557888888877655321      


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 004249          229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAG  308 (765)
Q Consensus       229 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~  308 (765)
                        -....++.+.|+|-...++++..-.-..+...-.++..+|..+..+..|++|.++|.+.-..            .+..
T Consensus       764 --DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------------e~~~  829 (1189)
T KOG2041|consen  764 --DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------------ENQI  829 (1189)
T ss_pred             --hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------------HhHH
Confidence              12234566777777776666553332222222346778888888888888888888776443            2445


Q ss_pred             HHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccH
Q 004249          309 ICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKER  388 (765)
Q Consensus       309 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  388 (765)
                      .|++...++++-..+...+     |++...+-.+|..+...|.-++|.+.|-+.-    .|..+      ......++++
T Consensus       830 ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pkaA------v~tCv~LnQW  894 (1189)
T KOG2041|consen  830 ECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPKAA------VHTCVELNQW  894 (1189)
T ss_pred             HHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcHHH------HHHHHHHHHH
Confidence            6667777776655555544     6667777888888888888888888774321    23221      1334556667


Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCC
Q 004249          389 EKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPP  432 (765)
Q Consensus       389 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  432 (765)
                      .+|.+.-++-.  -|.-.......+.-+...++.-+|++..+++
T Consensus       895 ~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka  936 (1189)
T KOG2041|consen  895 GEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA  936 (1189)
T ss_pred             HHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence            77766554421  1222222222333344455556666555554

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.83  E-value=0.0087  Score=65.04  Aligned_cols=278  Identities=15%  Similarity=0.085  Sum_probs=162.5

Q ss_pred             CHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHc-----CCHHHHHHHHHHHhcc-----CCCCHHHHHHHHHHHHHcC--
Q 004249          106 RYEEAISVLHEVIRLEEELPNSYHILGLVHDAL-----GNTAKAMGCYWLAACY-----KQKDSSLWKLIFPWLIEQG--  173 (765)
Q Consensus       106 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~a~~~-----~p~~~~~~~~la~~~~~~g--  173 (765)
                      ....|...++.+...  .+..+...+|.||..-     .+.+.|+.+|..+...     .-..+.+.+.+|.+|....  
T Consensus       227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence            356778888777554  4677888888888754     5889999999988761     1124557778888888743  


Q ss_pred             ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCH
Q 004249          174 ---DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG---NFQRAADVYRQMVQLCPENIEALKMGAKLYQK----SGQI  243 (765)
Q Consensus       174 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~  243 (765)
                         +...|..+|.++....  ++.+.+.+|.++....   ++..|..+|..+...  .+..+.+.++.+|..    ..+.
T Consensus       305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~  380 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL  380 (552)
T ss_pred             ccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence               6677899988887754  5677788888887655   578899999888764  567778888888764    3577


Q ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh----cCChh
Q 004249          244 ESSVDILEDYLKGHPTEADFGVIDLLASMLVQM-NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQ----LGNTD  318 (765)
Q Consensus       244 ~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~  318 (765)
                      ..|..++.++.+..+-.    +...++..+... +.++.+...+......-....................    ..+..
T Consensus       381 ~~A~~~~k~aA~~g~~~----A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~  456 (552)
T KOG1550|consen  381 ELAFAYYKKAAEKGNPS----AAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLE  456 (552)
T ss_pred             HHHHHHHHHHHHccChh----hHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchh
Confidence            88999999988876322    233444433322 6666666666555444100000000000000000000    11233


Q ss_pred             HHHHHHHhhcccCCCChHHHHHHHHHHHHcc----ccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHh---ccHHHH
Q 004249          319 KAEILLTAIHWENVSDHAESINEIADLFKNR----ELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLAL---KEREKS  391 (765)
Q Consensus       319 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A  391 (765)
                      .+...+.++.   ...++.+...+|.+|..-    .++..|...|..+...  .   +...+++|.++..-   .....|
T Consensus       457 ~~~~~~~~a~---~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~--~---~~~~~nlg~~~e~g~g~~~~~~a  528 (552)
T KOG1550|consen  457 RAFSLYSRAA---AQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ--G---AQALFNLGYMHEHGEGIKVLHLA  528 (552)
T ss_pred             HHHHHHHHHH---hccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh--h---hHHHhhhhhHHhcCcCcchhHHH
Confidence            3334444332   133455555555555332    2355666666555543  2   55555565555431   114555


Q ss_pred             HHHHHHHHHH
Q 004249          392 IIYFYKALQI  401 (765)
Q Consensus       392 ~~~~~~al~~  401 (765)
                      ..+|.++.+.
T Consensus       529 ~~~~~~~~~~  538 (552)
T KOG1550|consen  529 KRYYDQASEE  538 (552)
T ss_pred             HHHHHHHHhc
Confidence            5555555544

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=0.085  Score=57.98  Aligned_cols=328  Identities=13%  Similarity=0.097  Sum_probs=203.7

Q ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004249          123 ELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQ---KDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHL  199 (765)
Q Consensus       123 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  199 (765)
                      .+|+.-..-..+++..+-+.+-++.+++.+-.+.   .+......|..... .-+.....++.++.-..+..      .+
T Consensus       982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyDa~------~i 1054 (1666)
T KOG0985|consen  982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYDAP------DI 1054 (1666)
T ss_pred             CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCCch------hH
Confidence            3455555566677777778888888887763321   11122222222222 23444555555554333221      25


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccH
Q 004249          200 ASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAY  279 (765)
Q Consensus       200 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~  279 (765)
                      |.+....+-|++|...|++-    .-+..+..   .+....+..+.|.++.+++     +.+.  +|..+|.+..+.|..
T Consensus      1055 a~iai~~~LyEEAF~ifkkf----~~n~~A~~---VLie~i~~ldRA~efAe~~-----n~p~--vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF----DMNVSAIQ---VLIENIGSLDRAYEFAERC-----NEPA--VWSQLAKAQLQGGLV 1120 (1666)
T ss_pred             HHHHhhhhHHHHHHHHHHHh----cccHHHHH---HHHHHhhhHHHHHHHHHhh-----CChH--HHHHHHHHHHhcCch
Confidence            66777778889998888764    22333322   2234567788888877765     2223  799999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHH
Q 004249          280 DRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYY  359 (765)
Q Consensus       280 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  359 (765)
                      .+|++.|-++         +++..+.....+..+.|.+++-++++..+.+....  +.+-..+...|.+.++..+-.+.+
T Consensus      1121 ~dAieSyika---------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E--~~id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA---------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE--PYIDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred             HHHHHHHHhc---------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC--ccchHHHHHHHHHhchHHHHHHHh
Confidence            9999988654         33455667777788999999999999887654322  334445556677777776655544


Q ss_pred             HHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccc
Q 004249          360 HMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKY  439 (765)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  439 (765)
                      .       .|+.+.+ -..|.-++..|.|+.|.-.|..+        .-|..|+..+...|+++.|...-+++.....-.
T Consensus      1190 ~-------gpN~A~i-~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK 1253 (1666)
T KOG0985|consen 1190 A-------GPNVANI-QQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWK 1253 (1666)
T ss_pred             c-------CCCchhH-HHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence            1       5655443 45788888899999998877643        446778999999999999998888776521100


Q ss_pred             --cCc--ccchhh---------hhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHH
Q 004249          440 --VNS--DKTHAW---------WLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLA  506 (765)
Q Consensus       440 --~~~--~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~  506 (765)
                        -+.  +...+.         .....-+-.+...|...|-+++-+..+...+.         ....+...+..+|..|.
T Consensus      1254 ~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG---------LERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG---------LERAHMGMFTELAILYS 1324 (1666)
T ss_pred             HHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc---------hhHHHHHHHHHHHHHHH
Confidence              000  000000         00112233455677777877777766665553         44456666777776665


Q ss_pred             h
Q 004249          507 S  507 (765)
Q Consensus       507 ~  507 (765)
                      +
T Consensus      1325 k 1325 (1666)
T KOG0985|consen 1325 K 1325 (1666)
T ss_pred             h
Confidence            4

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.82  E-value=0.014  Score=60.37  Aligned_cols=292  Identities=16%  Similarity=0.088  Sum_probs=159.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------CCCHHHHHHHHHH
Q 004249           98 ASLHYALGRYEEAISVLHEVIRLEE-ELPNSYHILGLVHDALGNTAKAMGCYWLAACYK--------QKDSSLWKLIFPW  168 (765)
Q Consensus        98 a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~  168 (765)
                      +.++.+.|+++.    +.+.+...+ ..+...+..+......|+++++...+.++...-        +......+..-..
T Consensus         5 ~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~   80 (352)
T PF02259_consen    5 AEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK   80 (352)
T ss_pred             HHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            466788899988    333333333 234666667777778899999888888776531        1111111111111


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhCCHH--HHHHHHHHHHHh----CCCCHHHHHHHHHHHH
Q 004249          169 LIEQGDTTWAMSCLSEAVKADPNDF----KLKFHLASLYVELGNFQ--RAADVYRQMVQL----CPENIEALKMGAKLYQ  238 (765)
Q Consensus       169 ~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~--~A~~~~~~al~~----~p~~~~~~~~la~~~~  238 (765)
                      +......+++..+....... +...    ..|...-...  ..+++  +-+-.++..+-.    .......+...+.+..
T Consensus        81 lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR  157 (352)
T PF02259_consen   81 LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR  157 (352)
T ss_pred             HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            22233334444433221110 0000    1111111110  11111  111122222211    3345677899999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HhcCCCCccHHHHHHHHHHHHhcC
Q 004249          239 KSGQIESSVDILEDYLKGHPTEA--DFGVIDLLASMLVQMNAYDRVLKHIELVDL-VYYSGKELLLALKIKAGICHIQLG  315 (765)
Q Consensus       239 ~~g~~~~A~~~~~~~~~~~p~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~  315 (765)
                      +.|+++.|...+.++....+...  .+.+....+.++...|+..+|+..++..+. ................+...    
T Consensus       158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----  233 (352)
T PF02259_consen  158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE----  233 (352)
T ss_pred             HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc----
Confidence            99999999999999887653221  233666889999999999999999998887 32211111111111111000    


Q ss_pred             ChhHHHHHHHhhcccCCCChHHHHHHHHHHHHcc------ccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhcc--
Q 004249          316 NTDKAEILLTAIHWENVSDHAESINEIADLFKNR------ELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKE--  387 (765)
Q Consensus       316 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--  387 (765)
                      ..+.....  ............++..+|......      +..++++..|..+...  .|....+|+.+|..+...=.  
T Consensus       234 ~~~~~~~~--~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--~~~~~k~~~~~a~~~~~~~~~~  309 (352)
T PF02259_consen  234 SLEVISST--NLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--DPSWEKAWHSWALFNDKLLESD  309 (352)
T ss_pred             cccccccc--chhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--ChhHHHHHHHHHHHHHHHHHhh
Confidence            00000000  000001122245677777776666      8899999999999999  89888999988887755422  


Q ss_pred             ---------------HHHHHHHHHHHHHHcCC
Q 004249          388 ---------------REKSIIYFYKALQILED  404 (765)
Q Consensus       388 ---------------~~~A~~~~~~al~~~p~  404 (765)
                                     ...|+..|-+++...+.
T Consensus       310 ~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  310 PREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             hhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                           23466677777776665

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.79  E-value=3.2e-05  Score=47.90  Aligned_cols=33  Identities=33%  Similarity=0.540  Sum_probs=30.1

Q ss_pred             chHHHhHHHHHHHhchHHHHHHHHHHHHhhhhc
Q 004249          681 QEALYNIARAYHHVGLVSLAASYYEKVLAMYQK  713 (765)
Q Consensus       681 ~~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~  713 (765)
                      +++++++|.+|..+|++++|+.+|+++++++|+
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            368999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.79  E-value=3.9e-05  Score=76.49  Aligned_cols=108  Identities=14%  Similarity=0.061  Sum_probs=87.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH
Q 004249           96 GDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDT  175 (765)
Q Consensus        96 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~  175 (765)
                      .+|..++..++|+.|+.+|.++++++|+++..+-..+.++.+.+++..|+..+.++++.+|....+|+..|.+....+.+
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~   88 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF   88 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence            45677778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 004249          176 TWAMSCLSEAVKADPNDFKLKFHLASLY  203 (765)
Q Consensus       176 ~~A~~~~~~al~~~p~~~~~~~~la~~~  203 (765)
                      .+|...|+......|+++.+...+-.+-
T Consensus        89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~  116 (476)
T KOG0376|consen   89 KKALLDLEKVKKLAPNDPDATRKIDECN  116 (476)
T ss_pred             HHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence            8888888888888888887766655543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.77  E-value=0.11  Score=57.69  Aligned_cols=289  Identities=12%  Similarity=0.008  Sum_probs=184.3

Q ss_pred             HHHHHHHHHHHhccCCC----CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCC--CCH----HHHHHHHHHHHHhCCH
Q 004249          141 TAKAMGCYWLAACYKQK----DSSLWKLIFPWLI-EQGDTTWAMSCLSEAVKADP--NDF----KLKFHLASLYVELGNF  209 (765)
Q Consensus       141 ~~~A~~~~~~a~~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p--~~~----~~~~~la~~~~~~g~~  209 (765)
                      ...|+.+++-+++..+-    ...+.+.+|.++. ...+++.|..++++++.+..  +..    .+.+.++.++.+.+..
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence            35678888888742221    2356778999877 78999999999999987753  222    3456778888888877


Q ss_pred             HHHHHHHHHHHHhCCC---CHH-HHHHH--HHHHHHcCCHHHHHHHHHHHHhcCC--CCCCHHHHH--HHHHHHHHhccH
Q 004249          210 QRAADVYRQMVQLCPE---NIE-ALKMG--AKLYQKSGQIESSVDILEDYLKGHP--TEADFGVID--LLASMLVQMNAY  279 (765)
Q Consensus       210 ~~A~~~~~~al~~~p~---~~~-~~~~l--a~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~--~l~~~~~~~~~~  279 (765)
                      . |...+++.++....   ... ..+.+  ...+...+++..|++.++.......  .++...++.  ..+.+....+..
T Consensus       117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~  195 (608)
T PF10345_consen  117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP  195 (608)
T ss_pred             H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence            7 99999999886554   222 12222  3333344899999999999887653  443322222  345566677888


Q ss_pred             HHHHHHHHHHHHHhcC------CCCccHHHHHHH--HHHHHhcCChhHHHHHHHhh---cccC--CC------C------
Q 004249          280 DRVLKHIELVDLVYYS------GKELLLALKIKA--GICHIQLGNTDKAEILLTAI---HWEN--VS------D------  334 (765)
Q Consensus       280 ~~A~~~~~~~~~~~~~------~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~---~~~~--~~------~------  334 (765)
                      +++++.++++......      ..+....++..+  ..+.+..|+++.+...++.+   +...  .+      +      
T Consensus       196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l  275 (608)
T PF10345_consen  196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL  275 (608)
T ss_pred             hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence            8899998888554221      111223333333  23567778877777665553   1100  00      0      


Q ss_pred             ----------h-H-------------HHHHHHHHHHHccccHHHHHHHHHHHHhccC--------CCCC-----------
Q 004249          335 ----------H-A-------------ESINEIADLFKNRELYSTALKYYHMLEANAG--------VHND-----------  371 (765)
Q Consensus       335 ----------~-~-------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~-----------  371 (765)
                                . +             -++..-|...+..|..+.|.++++++++.-.        .+..           
T Consensus       276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~  355 (608)
T PF10345_consen  276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQW  355 (608)
T ss_pred             ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHH
Confidence                      0 0             1233334455666767688777777764410        1110           


Q ss_pred             -----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHc---CC------CHHHHHHHHHHHHHcCCHHHHHHhcC
Q 004249          372 -----GCLHLKIAECSLALKEREKSIIYFYKALQIL---ED------NIDARLTLASLLLEDAKDEEAISLLT  430 (765)
Q Consensus       372 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~  430 (765)
                           ..+.+..+.+..-.+++..|....+.+....   |.      .+..++..|..+...|+.+.|...|.
T Consensus       356 ~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  356 LRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence                 1233456777788899999999888877653   22      35677788999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.72  E-value=0.011  Score=64.18  Aligned_cols=277  Identities=14%  Similarity=0.052  Sum_probs=191.4

Q ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhC---
Q 004249          141 TAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQ-----GDTTWAMSCLSEAVKA-----DPNDFKLKFHLASLYVELG---  207 (765)
Q Consensus       141 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g---  207 (765)
                      ...|..+++.+...  .+..+...+|.++..-     .+.+.|+.+|+.+...     .-..+.+...+|.+|....   
T Consensus       228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~  305 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE  305 (552)
T ss_pred             hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence            46788888888765  4777788888887654     6899999999999771     1225567888999998853   


Q ss_pred             --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh----cc
Q 004249          208 --NFQRAADVYRQMVQLCPENIEALKMGAKLYQKSG---QIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM----NA  278 (765)
Q Consensus       208 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~----~~  278 (765)
                        ++..|+.+|.++-..  .++.+.+.+|.++....   ++..|..+|..+....-.  .  +.+.++.+|..-    .+
T Consensus       306 ~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~--~--A~~~la~~y~~G~gv~r~  379 (552)
T KOG1550|consen  306 KIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI--L--AIYRLALCYELGLGVERN  379 (552)
T ss_pred             cccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh--H--HHHHHHHHHHhCCCcCCC
Confidence              778899999999876  45667888999888765   678999999998875432  2  566788777643    57


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc-CChhHHHHHHHhhcccC--CC-ChHHHHHHHHHHHHc----cc
Q 004249          279 YDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQL-GNTDKAEILLTAIHWEN--VS-DHAESINEIADLFKN----RE  350 (765)
Q Consensus       279 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~--~~-~~~~~~~~la~~~~~----~g  350 (765)
                      ...|..+++++...    .  .+.+...++.++... +.++.+...+.......  .+ .+...+.........    ..
T Consensus       380 ~~~A~~~~k~aA~~----g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~  453 (552)
T KOG1550|consen  380 LELAFAYYKKAAEK----G--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVIS  453 (552)
T ss_pred             HHHHHHHHHHHHHc----c--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcccccccccccc
Confidence            89999999999988    2  344444444433322 77777666555442211  01 111111111111111    22


Q ss_pred             cHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc-C--CHH
Q 004249          351 LYSTALKYYHMLEANAGVHNDGCLHLKIAECSLAL----KEREKSIIYFYKALQILEDNIDARLTLASLLLED-A--KDE  423 (765)
Q Consensus       351 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g--~~~  423 (765)
                      +...+...+.++.    ...++.+...+|.+|..-    .+++.|...|.++....   ....+.+|.++..- |  ...
T Consensus       454 ~~~~~~~~~~~a~----~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~  526 (552)
T KOG1550|consen  454 TLERAFSLYSRAA----AQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLH  526 (552)
T ss_pred             chhHHHHHHHHHH----hccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhH
Confidence            5566666776665    456788899999998775    34999999999998876   88889999998652 2  268


Q ss_pred             HHHHhcCCCCCcccc
Q 004249          424 EAISLLTPPMSLENK  438 (765)
Q Consensus       424 ~A~~~~~~~~~~~~~  438 (765)
                      .|.+++.++...+..
T Consensus       527 ~a~~~~~~~~~~~~~  541 (552)
T KOG1550|consen  527 LAKRYYDQASEEDSR  541 (552)
T ss_pred             HHHHHHHHHHhcCch
Confidence            888888877765444

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=0.00052  Score=61.86  Aligned_cols=115  Identities=19%  Similarity=0.199  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRL--------EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLW  162 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~  162 (765)
                      +..+..+|+.++..|+|.+|...|+.++..        .|..++.                        ++++......+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW------------------------~eLdk~~tpLl  233 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW------------------------LELDKMITPLL  233 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH------------------------HHHHHhhhHHH
Confidence            455678899999999999999999888643        2322211                        11122233455


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 004249          163 KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA  229 (765)
Q Consensus       163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  229 (765)
                      .++++|+...|+|-++++....++..+|.+..+++..|.+....-+..+|...|.++++++|.-..+
T Consensus       234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            6667777777777777777777777777777777777777777777777777777777777665443

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.69  E-value=0.018  Score=62.52  Aligned_cols=287  Identities=13%  Similarity=0.023  Sum_probs=175.4

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHH
Q 004249          265 VIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIAD  344 (765)
Q Consensus       265 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~  344 (765)
                      .+..-+..+...|...+|+...-.+-+-     ..........+.-.+..++..--....+.+-....-.+|......++
T Consensus       349 lH~~Aa~w~~~~g~~~eAI~hAlaA~d~-----~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW  423 (894)
T COG2909         349 LHRAAAEWFAEHGLPSEAIDHALAAGDP-----EMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAW  423 (894)
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHhCCCH-----HHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHH
Confidence            4556666777777777777765433211     11222233334444455554444444444321111334667777788


Q ss_pred             HHHccccHHHHHHHHHHHHhccCCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH-----HHHHHH
Q 004249          345 LFKNRELYSTALKYYHMLEANAGVHND-------GCLHLKIAECSLALKEREKSIIYFYKALQILEDNI-----DARLTL  412 (765)
Q Consensus       345 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l  412 (765)
                      ......++.+|..++.++...-..|+.       ...-...|.+....|++++|.+..+.++..-|.+.     .+...+
T Consensus       424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~  503 (894)
T COG2909         424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL  503 (894)
T ss_pred             HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence            888899999999999887755212222       23445567888899999999999999999877654     456668


Q ss_pred             HHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHH--HhhHHHHhhhcccccccC
Q 004249          413 ASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFV--DMLLPLVCESSHQEETFN  490 (765)
Q Consensus       413 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~--~~~~~~~~~~~~l~~~~~  490 (765)
                      +.+..-.|++++|..+..++.+.....      ..++....+....+.++..+|+...+.  ..+...-....+     .
T Consensus       504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~------~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~-----q  572 (894)
T COG2909         504 GEAAHIRGELTQALALMQQAEQMARQH------DVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE-----Q  572 (894)
T ss_pred             hHHHHHhchHHHHHHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh-----h
Confidence            888899999999999998877653322      233444566667788888899433332  222222111100     2


Q ss_pred             hhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCc--hHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCc
Q 004249          491 HEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPV--EKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHR  567 (765)
Q Consensus       491 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~  567 (765)
                      .|-+.-.+...+.++...-+++.+..-..+.+++.....|.  ........++.+.+..|+.++|......+....-++
T Consensus       573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~  651 (894)
T COG2909         573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG  651 (894)
T ss_pred             cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence            22222233444444444444777777777777766443232  233333456669999999999999999887654433

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.68  E-value=5.5e-05  Score=46.31  Aligned_cols=32  Identities=38%  Similarity=0.494  Sum_probs=25.3

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHH
Q 004249          395 FYKALQILEDNIDARLTLASLLLEDAKDEEAI  426 (765)
Q Consensus       395 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  426 (765)
                      |+++++++|+++.+|+.+|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            67778888888888888888888888887775

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.65  E-value=0.025  Score=56.50  Aligned_cols=79  Identities=13%  Similarity=-0.042  Sum_probs=40.7

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HhcCCCCHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACY----KQKDSSLWKLIFPWLIE---QGDTTWAMSCLSEA-VKADPNDFKLKF  197 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~~~  197 (765)
                      ++...+-.+|....+|+.-++..+..-.+    -++.+.+.+.+|.++.+   .|+.++|+..+..+ ....+.+++.+.
T Consensus       142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g  221 (374)
T PF13281_consen  142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG  221 (374)
T ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence            34444445555555565555555554443    23344444555555555   55566666665553 233445555555


Q ss_pred             HHHHHHH
Q 004249          198 HLASLYV  204 (765)
Q Consensus       198 ~la~~~~  204 (765)
                      .+|.+|.
T Consensus       222 L~GRIyK  228 (374)
T PF13281_consen  222 LLGRIYK  228 (374)
T ss_pred             HHHHHHH
Confidence            5555554

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.65  E-value=0.15  Score=55.73  Aligned_cols=304  Identities=14%  Similarity=0.047  Sum_probs=181.7

Q ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCHHHHHH
Q 004249          125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS-SLWKLIFPWLIEQGDTTWAMSCLSEAVKADP-----NDFKLKFH  198 (765)
Q Consensus       125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~  198 (765)
                      .+.+..-+.-+...|...+|+...-.+-  +|... ......+.-....++..    .+..++..-|     .+|.....
T Consensus       347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~--d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~P~Lvll  420 (894)
T COG2909         347 KELHRAAAEWFAEHGLPSEAIDHALAAG--DPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLASTPRLVLL  420 (894)
T ss_pred             hHHHHHHHHHHHhCCChHHHHHHHHhCC--CHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhCchHHHH
Confidence            4666777777778888888887765442  23222 22222344444444433    2333333333     34566677


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC---HHHH
Q 004249          199 LASLYVELGNFQRAADVYRQMVQLCPE--N-------IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD---FGVI  266 (765)
Q Consensus       199 la~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~  266 (765)
                      .+.......++.+|..++.++...-|.  .       ....-..|.+....|++++|+.+.+.++..-|.+..   ...+
T Consensus       421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~  500 (894)
T COG2909         421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL  500 (894)
T ss_pred             HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence            788888899999999999888765443  1       234455677888899999999999999998777643   3356


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHH--HHHHHHHHhcCChhHH--HHHHHhhccc---CCCChHHHH
Q 004249          267 DLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALK--IKAGICHIQLGNTDKA--EILLTAIHWE---NVSDHAESI  339 (765)
Q Consensus       267 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A--~~~~~~~~~~---~~~~~~~~~  339 (765)
                      ..+|.+..-.|++++|..+..++.+.....+.....++  ...+.++...|+...+  ...+...-..   ..+.+.-..
T Consensus       501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~  580 (894)
T COG2909         501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLV  580 (894)
T ss_pred             hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHH
Confidence            68899999999999999999998877443333333333  3446677888843333  2333322111   112222222


Q ss_pred             HHHHHHHHccccHHHHHHHHHHHHhcc----CCCCCHH-HHHHHHHHHHHhccHHHHHHHHHHHHHHcCCC-H----HH-
Q 004249          340 NEIADLFKNRELYSTALKYYHMLEANA----GVHNDGC-LHLKIAECSLALKEREKSIIYFYKALQILEDN-I----DA-  408 (765)
Q Consensus       340 ~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~----~~-  408 (765)
                      ...+.++...-+++.+..-....++..    ..|.... ..+.++.++...|++++|...+.....+.... .    .+ 
T Consensus       581 ~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~  660 (894)
T COG2909         581 RIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA  660 (894)
T ss_pred             HHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence            222222222222454444444443331    1222222 23478999999999999999999887764332 1    11 


Q ss_pred             -HHHHHHHHHHcCCHHHHHHhcCCCCC
Q 004249          409 -RLTLASLLLEDAKDEEAISLLTPPMS  434 (765)
Q Consensus       409 -~~~l~~~~~~~g~~~~A~~~~~~~~~  434 (765)
                       ..........+|+..+|...+.+...
T Consensus       661 ~~~v~~~lwl~qg~~~~a~~~l~~s~~  687 (894)
T COG2909         661 AYKVKLILWLAQGDKELAAEWLLKSGD  687 (894)
T ss_pred             HHHhhHHHhcccCCHHHHHHHHHhccC
Confidence             11122233457899988888776544

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=0.0034  Score=59.13  Aligned_cols=151  Identities=13%  Similarity=0.016  Sum_probs=101.8

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF-KLKFHLASLYV  204 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~  204 (765)
                      +.-+..+.-....|++.+|...|..++...|++..+...++.++...|+.+.|...+...-....... .........+.
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~  214 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE  214 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence            34455566777889999999999999999999988899999999999999888888765422221111 11111123333


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc
Q 004249          205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMN  277 (765)
Q Consensus       205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~  277 (765)
                      +.....+. ..+++.+..+|++..+-+.+|..+...|+.+.|.+.+-..++.+....+..+-..+..++...|
T Consensus       215 qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         215 QAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            33333322 3345556778888888899999999999999999888888887666554334445555554444

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.63  E-value=0.052  Score=53.43  Aligned_cols=65  Identities=18%  Similarity=0.220  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHhCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004249          194 KLKFHLASLYVELGNFQ---RAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHP  258 (765)
Q Consensus       194 ~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  258 (765)
                      .++..++.++...+.++   +|...++.+....|+.+..+...-.++.+.++.+.+.+.+.+++...+
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            34566666666665543   344455555556666666665555555556777777777777776543

It is also involved in sporulation [].

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.023  Score=52.28  Aligned_cols=173  Identities=12%  Similarity=0.106  Sum_probs=140.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH-HH
Q 004249          101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALG-NTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTT-WA  178 (765)
Q Consensus       101 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~-~A  178 (765)
                      +.+...-..|+.+-..++..+|.+-.+|...-.++..++ +..+-+.++...++-+|++-.+|...-.+....|++. .-
T Consensus        53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE  132 (318)
T KOG0530|consen   53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE  132 (318)
T ss_pred             HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence            345567789999999999999999988888777776654 6788889999999999999999998888888888888 88


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC-----CHHHHHHHHHH
Q 004249          179 MSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK-SG-----QIESSVDILED  252 (765)
Q Consensus       179 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~  252 (765)
                      +++.+.++..+..+..+|...-.+...-+.++.-+.+..+.++.+-.+-.+|...-.+... .|     ..+.-+.+..+
T Consensus       133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~  212 (318)
T KOG0530|consen  133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKD  212 (318)
T ss_pred             HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999887776666543322222 12     23445667778


Q ss_pred             HHhcCCCCCCHHHHHHHHHHHHH
Q 004249          253 YLKGHPTEADFGVIDLLASMLVQ  275 (765)
Q Consensus       253 ~~~~~p~~~~~~~~~~l~~~~~~  275 (765)
                      .+...|++..  +|+.|.-++..
T Consensus       213 ~I~~vP~NeS--aWnYL~G~l~~  233 (318)
T KOG0530|consen  213 KILLVPNNES--AWNYLKGLLEL  233 (318)
T ss_pred             HHHhCCCCcc--HHHHHHHHHHh
Confidence            8899999988  78888777765

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.59  E-value=0.0001  Score=45.50  Aligned_cols=32  Identities=34%  Similarity=0.623  Sum_probs=30.4

Q ss_pred             hHHHhHHHHHHHhchHHHHHHHHHHHHhhhhc
Q 004249          682 EALYNIARAYHHVGLVSLAASYYEKVLAMYQK  713 (765)
Q Consensus       682 ~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~  713 (765)
                      ++++.+|.+|.++|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            68999999999999999999999999999983

...

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.58  E-value=9.7e-05  Score=73.75  Aligned_cols=100  Identities=15%  Similarity=0.061  Sum_probs=48.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q 004249          132 GLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQR  211 (765)
Q Consensus       132 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  211 (765)
                      +...+.-+.++.|+..|.++++++|++...+...+.++...+++..|+.-+.++++.+|....+|+..|.+....+.+.+
T Consensus        11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~   90 (476)
T KOG0376|consen   11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK   90 (476)
T ss_pred             HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence            33344444444555555555555544444444444444444555555555555554444444444444444444445555


Q ss_pred             HHHHHHHHHHhCCCCHHHHH
Q 004249          212 AADVYRQMVQLCPENIEALK  231 (765)
Q Consensus       212 A~~~~~~al~~~p~~~~~~~  231 (765)
                      |...|+....+.|+++.+..
T Consensus        91 A~~~l~~~~~l~Pnd~~~~r  110 (476)
T KOG0376|consen   91 ALLDLEKVKKLAPNDPDATR  110 (476)
T ss_pred             HHHHHHHhhhcCcCcHHHHH
Confidence            55555544444444444433

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.0017  Score=58.67  Aligned_cols=70  Identities=14%  Similarity=0.128  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249          193 FKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD  262 (765)
Q Consensus       193 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  262 (765)
                      ...+.+.++|+...|+|-++++....++...|.+..+++..|.+....=+..+|..-|.++++++|.-..
T Consensus       230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            3578899999999999999999999999999999999999999999999999999999999999998654

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.48  E-value=0.0025  Score=67.43  Aligned_cols=117  Identities=16%  Similarity=0.064  Sum_probs=73.4

Q ss_pred             cCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 004249          104 LGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD----SSLWKLIFPWLIEQGDTTWAM  179 (765)
Q Consensus       104 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~~~~g~~~~A~  179 (765)
                      ..+.+.|.+++.......|+..-.++..|.++...|+.++|+..|++++.....-    .-.++.++.++..+++|++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            4566777777777777777777777777777777777777777777776432221    133455666666677777777


Q ss_pred             HHHHHHHhcCCCCH-HHHHHHHHHHHHhCCH-------HHHHHHHHHHH
Q 004249          180 SCLSEAVKADPNDF-KLKFHLASLYVELGNF-------QRAADVYRQMV  220 (765)
Q Consensus       180 ~~~~~al~~~p~~~-~~~~~la~~~~~~g~~-------~~A~~~~~~al  220 (765)
                      .++.+..+.+.-.. -..+..|.++...|+.       ++|...+.++-
T Consensus       326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            77766666544322 2334555566666666       55555555443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=97.48  E-value=0.14  Score=51.56  Aligned_cols=126  Identities=17%  Similarity=0.029  Sum_probs=91.0

Q ss_pred             HHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 004249          136 DALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADV  215 (765)
Q Consensus       136 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  215 (765)
                      ...|+.-.|-.-...++...|.+|......+.+...+|+|+.+...+..+-..-.....+...+-.....+|++++|...
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~  379 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST  379 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence            45577777777777788877888877777788888888888888777665554333444555566667778888888888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 004249          216 YRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA  261 (765)
Q Consensus       216 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  261 (765)
                      ...++...-+++++....+.....+|-++++...+++.+.++|...
T Consensus       380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~  425 (831)
T PRK15180        380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ  425 (831)
T ss_pred             HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence            7777776666666666556666677778888888888888776543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.47  E-value=0.13  Score=50.59  Aligned_cols=124  Identities=11%  Similarity=0.010  Sum_probs=94.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHhh-CCCc-------hHHHHHHHHHHHcC-CHHHHHHHHHHHhcc----CC---CC------
Q 004249          101 HYALGRYEEAISVLHEVIRLE-EELP-------NSYHILGLVHDALG-NTAKAMGCYWLAACY----KQ---KD------  158 (765)
Q Consensus       101 ~~~~g~~~~A~~~~~~~l~~~-p~~~-------~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~----~p---~~------  158 (765)
                      ....|+++.|..++.++-... ..++       ..++..|......+ +++.|..+++++.+.    .+   ..      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            467899999999999987655 2232       56788888888999 999999999999876    21   11      


Q ss_pred             -HHHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 004249          159 -SSLWKLIFPWLIEQGDTT---WAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCP  224 (765)
Q Consensus       159 -~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  224 (765)
                       ..++..++.++...+.++   +|...++.+-...|+.+..+...-.+....++.+.+.+.+.+++...+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence             135667899999888765   455555566566788888876666677778999999999999998655

It is also involved in sporulation [].

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.43  E-value=0.023  Score=56.77  Aligned_cols=123  Identities=10%  Similarity=0.062  Sum_probs=95.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---hCCHHHHHHHHHH-HHHhCCCCHHH
Q 004249          158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA----DPNDFKLKFHLASLYVE---LGNFQRAADVYRQ-MVQLCPENIEA  229 (765)
Q Consensus       158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~  229 (765)
                      +++....+-.+|....+|+.-+...+.+-..    -++.+.+.+..|.++.+   .|+.++|+..+.. .....+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            3456667777899999999999998887766    45567788899999998   9999999999999 55566778899


Q ss_pred             HHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHH
Q 004249          230 LKMGAKLYQKS---------GQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVL  283 (765)
Q Consensus       230 ~~~la~~~~~~---------g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~  283 (765)
                      +..+|.+|-..         ...++|+..|.++.+.+|+...   -.+++.++...|...+..
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~---GIN~AtLL~~~g~~~~~~  279 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS---GINAATLLMLAGHDFETS  279 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc---hHHHHHHHHHcCCcccch
Confidence            99999988632         3478999999999999976543   236676776666544433

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.42  E-value=0.0003  Score=43.36  Aligned_cols=34  Identities=21%  Similarity=0.375  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCC
Q 004249          372 GCLHLKIAECSLALKEREKSIIYFYKALQILEDN  405 (765)
Q Consensus       372 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  405 (765)
                      +.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3578888888888888888888888888888863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.40  E-value=0.00045  Score=42.58  Aligned_cols=34  Identities=26%  Similarity=0.332  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCC
Q 004249          372 GCLHLKIAECSLALKEREKSIIYFYKALQILEDN  405 (765)
Q Consensus       372 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  405 (765)
                      +.+++.+|.++...|++++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4577888888888888888888888888888864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.39  E-value=0.18  Score=50.37  Aligned_cols=69  Identities=4%  Similarity=-0.115  Sum_probs=48.6

Q ss_pred             CCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 004249           85 KKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAAC  153 (765)
Q Consensus        85 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  153 (765)
                      ...|.++..++....-+-.+|.+++-.+.+++...-.|--+.+|...-..-...+++......|.+++.
T Consensus        36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~  104 (660)
T COG5107          36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK  104 (660)
T ss_pred             hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence            345678888888888888899999999999998887777666665544444444555555555555443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.35  E-value=0.0053  Score=53.84  Aligned_cols=118  Identities=20%  Similarity=0.083  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 004249           92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE  171 (765)
Q Consensus        92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  171 (765)
                      ..+...|......|+.+.++..+++++.......-.-..-      ..-.......++..      ...+...++..+..
T Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~   74 (146)
T PF03704_consen    7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLREL------YLDALERLAEALLE   74 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence            3445556667788899999999999887653221000000      00011111122211      22445566777777


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004249          172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQ  221 (765)
Q Consensus       172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  221 (765)
                      .|++++|+..+++++..+|.+..++..+..++...|+...|+..|++...
T Consensus        75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            88888888888888888888778888888888888888888877777644

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.34  E-value=0.00036  Score=42.70  Aligned_cols=32  Identities=31%  Similarity=0.672  Sum_probs=30.3

Q ss_pred             hHHHhHHHHHHHhchHHHHHHHHHHHHhhhhc
Q 004249          682 EALYNIARAYHHVGLVSLAASYYEKVLAMYQK  713 (765)
Q Consensus       682 ~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~  713 (765)
                      +++|++|++|...|++++|+..|+++++..|+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            57999999999999999999999999999984

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.32  E-value=0.0071  Score=64.05  Aligned_cols=120  Identities=14%  Similarity=0.024  Sum_probs=71.9

Q ss_pred             cHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhccc---CCCChHHHHHHHHHHHHccccHHH
Q 004249          278 AYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWE---NVSDHAESINEIADLFKNRELYST  354 (765)
Q Consensus       278 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~  354 (765)
                      ..+.|.+.+......    .|...-..+..|.++...|+.++|++.|++++..   .+.-..-.++.++.++.-.++|++
T Consensus       248 ~~~~a~~lL~~~~~~----yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~  323 (468)
T PF10300_consen  248 PLEEAEELLEEMLKR----YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE  323 (468)
T ss_pred             CHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence            445555555555555    4445555555566666666666666666654421   111223456677777777777777


Q ss_pred             HHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccH-------HHHHHHHHHHHHHc
Q 004249          355 ALKYYHMLEANAGVHNDGCLHLKIAECSLALKER-------EKSIIYFYKALQIL  402 (765)
Q Consensus       355 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~  402 (765)
                      |..+|.++.+.. .-......+..|.|+...|+.       ++|...|.++-...
T Consensus       324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            777777777652 222334445667777777777       77777777776553

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.31  E-value=0.00035  Score=43.60  Aligned_cols=31  Identities=39%  Similarity=0.595  Sum_probs=26.8

Q ss_pred             HHHhHHHHHHHhchHHHHHHHHHHHHhhhhc
Q 004249          683 ALYNIARAYHHVGLVSLAASYYEKVLAMYQK  713 (765)
Q Consensus       683 ~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~  713 (765)
                      ++.+||.+|..+|++++|+.+|+++|.+.++
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            5789999999999999999999998877653

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.29  E-value=0.81  Score=55.86  Aligned_cols=405  Identities=13%  Similarity=0.058  Sum_probs=230.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhCCC---chH-HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 004249           96 GDASLHYALGRYEEAISVLHEVIRLEEEL---PNS-YHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE  171 (765)
Q Consensus        96 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~-~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  171 (765)
                      ..|.+-++.+.|.+|+-++++- ...+..   .+. ++.+-.+|...++++.-......-. .+|.    ..........
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-a~~s----l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-ADPS----LYQQILEHEA 1461 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-cCcc----HHHHHHHHHh
Confidence            4567788999999999999985 222211   133 4444448999999998777766411 1222    3344455778


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHcCCHHHHHHHH
Q 004249          172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGA-KLYQKSGQIESSVDIL  250 (765)
Q Consensus       172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~  250 (765)
                      .|++..|..+|++++..+|+....+...-......|.+...+...+-.....++...-+..++ .+-.+.++++.-..+.
T Consensus      1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred             hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence            999999999999999999998888888888888889999999888777666665555555444 3446788887766655


Q ss_pred             HHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHH--HHHHHHHHHhc------CCCCccHHHHHHHHHHHHhcCChhHHHH
Q 004249          251 EDYLKGHPTEADFGVIDLLASMLVQMNAYDRVL--KHIELVDLVYY------SGKELLLALKIKAGICHIQLGNTDKAEI  322 (765)
Q Consensus       251 ~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~--~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~  322 (765)
                      .     +.+...+.+ ..+|.+..+..+-+.-.  ..++.+.....      .........+-.+.. +...-+.+...+
T Consensus      1542 ~-----~~n~e~w~~-~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~k-LH~l~el~~~~~ 1614 (2382)
T KOG0890|consen 1542 S-----DRNIEYWSV-ESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMK-LHLLLELENSIE 1614 (2382)
T ss_pred             h-----cccccchhH-HHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHH-HHHHHHHHHHHH
Confidence            4     222222222 12666666554322211  12221111100      000000011111111 111112222222


Q ss_pred             HHHhhccc-CCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhc-----cCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 004249          323 LLTAIHWE-NVSDHAESINEIADLFKNRELYSTALKYYHMLEAN-----AGVHNDGCLHLKIAECSLALKEREKSIIYFY  396 (765)
Q Consensus       323 ~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  396 (765)
                      .+.+.-.. ....+.+-|.+....-....+..+-+-.+++..-.     .....-.+.|...|++....|.++.|....-
T Consensus      1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred             HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            22222111 11111223333322222222344444444444322     1123456899999999999999999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccc-cccCc-----ccchhhhhhhHHHHHHHHHHHhcchhH-
Q 004249          397 KALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLEN-KYVNS-----DKTHAWWLNIRIKIKLCRIYKAKGMIE-  469 (765)
Q Consensus       397 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~a~~~~~~~~~~-  469 (765)
                      .+.+..  -+++....|..+...|+...|+..+++.++... +...|     ...+... ...+.+.++......++.+ 
T Consensus      1695 ~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i-~~~~~L~~~~~~~es~n~~s 1771 (2382)
T KOG0890|consen 1695 NAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLI-FKKAKLKITKYLEESGNFES 1771 (2382)
T ss_pred             hhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhh-hhhHHHHHHHHHHHhcchhH
Confidence            998876  467889999999999999999999988774432 21111     1111111 2245666666666666633 


Q ss_pred             -HHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHH------------HhhhcHHH---HHHHHHHHHHhc
Q 004249          470 -GFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTL------------ASLHRYED---AIKIINLILKLG  525 (765)
Q Consensus       470 -~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~---A~~~~~~al~~~  525 (765)
                       +-+..|..+..         ..|.+.+.++.+|.-|            .+.|++..   ++-.|.+++.-+
T Consensus      1772 ~~ilk~Y~~~~a---------il~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg 1834 (2382)
T KOG0890|consen 1772 KDILKYYHDAKA---------ILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYG 1834 (2382)
T ss_pred             HHHHHHHHHHHH---------HcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhc
Confidence             23334444443         4455555566666332            23355555   555555666644

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.0023  Score=60.67  Aligned_cols=97  Identities=18%  Similarity=0.109  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 004249           93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELP----NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPW  168 (765)
Q Consensus        93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~  168 (765)
                      ..-..|+-++..++|..|+..|.+.|+....++    ..|.+.+-|.+..|+|..|+....+++.++|.+..+++.-|.|
T Consensus        83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc  162 (390)
T KOG0551|consen   83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC  162 (390)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence            334567888888888888888888877654443    4566777777778888888888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHhcC
Q 004249          169 LIEQGDTTWAMSCLSEAVKAD  189 (765)
Q Consensus       169 ~~~~g~~~~A~~~~~~al~~~  189 (765)
                      ++.+.++.+|...++..+.++
T Consensus       163 ~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  163 LLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             HHHHHHHHHHHHHHhhhhhhh
Confidence            888888777777777765543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.28  E-value=0.04  Score=47.33  Aligned_cols=126  Identities=7%  Similarity=-0.002  Sum_probs=59.9

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChh
Q 004249          239 KSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTD  318 (765)
Q Consensus       239 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  318 (765)
                      ..+..++|+..|..+-+..-.+....+....+.+..+.|+...|+..|..+-...+........+...-+.++...|.|+
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~  149 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD  149 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence            34555555555555444433333322344555555555666666666555544322111111223344444555555555


Q ss_pred             HHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHh
Q 004249          319 KAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEA  364 (765)
Q Consensus       319 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  364 (765)
                      ......+.+-....|-...+...||..-.+.|++.+|..+|..+..
T Consensus       150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            5555555443333233344445555555555555555555555443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.28  E-value=0.021  Score=50.26  Aligned_cols=118  Identities=11%  Similarity=0.028  Sum_probs=72.6

Q ss_pred             HHHHHHHHHhccCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhCCHHHHHHHH
Q 004249          143 KAMGCYWLAACYKQKDSS---LWKLIFPWLIEQGDTTWAMSCLSEAVKADPND---FKLKFHLASLYVELGNFQRAADVY  216 (765)
Q Consensus       143 ~A~~~~~~a~~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~  216 (765)
                      +......+....+|....   +-..++..+...|++++|+..++.++....+.   .-+-..++.+...+|.+++|+..+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L  149 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL  149 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            333344444444444432   33456777777888888888887777542221   234567777888888888887777


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 004249          217 RQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA  261 (765)
Q Consensus       217 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  261 (765)
                      ....... -.+......|.++...|+-++|+..|++++...++..
T Consensus       150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence            6543210 1123345667888888888888888888877764443

>PRK11619 lytic murein transglycosylase; Provisional

Probab=97.26  E-value=0.47  Score=52.41  Aligned_cols=412  Identities=11%  Similarity=0.020  Sum_probs=218.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALG--NTAKAMGCYWLAACYKQKDSSLWKLIFPW  168 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~la~~  168 (765)
                      -...+..|...+..|++..+.....++ ...|-  ..|...-.+....+  .++    .+...+...|+.+.........
T Consensus        33 ~r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~~~~~----ev~~Fl~~~~~~P~~~~Lr~~~  105 (644)
T PRK11619         33 QRQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMNQPAV----QVTNFIRANPTLPPARSLQSRF  105 (644)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhccccCCHH----HHHHHHHHCCCCchHHHHHHHH
Confidence            356788899999999999987766653 33332  23333333333323  233    3334445566666444333322


Q ss_pred             ---HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004249          169 ---LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIES  245 (765)
Q Consensus       169 ---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  245 (765)
                         +...+++..-+.++    ...|.+.......+......|+.++|....+++.......+.....+-..+...|....
T Consensus       106 l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~  181 (644)
T PRK11619        106 VNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDP  181 (644)
T ss_pred             HHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCH
Confidence               33456666555533    23478888888888889999999888888888766554444444444444444444333


Q ss_pred             HHHH--HHHHHhcCCCCCCHHHHHHHHH-----------HHHHh-ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004249          246 SVDI--LEDYLKGHPTEADFGVIDLLAS-----------MLVQM-NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICH  311 (765)
Q Consensus       246 A~~~--~~~~~~~~p~~~~~~~~~~l~~-----------~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  311 (765)
                      ....  +..++.  ..+..  ....+..           ..... .+...+...+.    ..+  ..........++...
T Consensus       182 ~d~w~R~~~al~--~~~~~--lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~----~~~--~~~~~~~~~~~~l~R  251 (644)
T PRK11619        182 LAYLERIRLAMK--AGNTG--LVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR----TTG--PTDFTRQMAAVAFAS  251 (644)
T ss_pred             HHHHHHHHHHHH--CCCHH--HHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh----ccC--CChhhHHHHHHHHHH
Confidence            2211  111111  11111  1111111           11111 11111111111    000  011111223344445


Q ss_pred             HhcCChhHHHHHHHhhcccCC---CChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccH
Q 004249          312 IQLGNTDKAEILLTAIHWENV---SDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKER  388 (765)
Q Consensus       312 ~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  388 (765)
                      ....+.+.|...+........   .....++..+|.-....+...+|..++..+...   ..+...+.....+....+++
T Consensus       252 lar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw  328 (644)
T PRK11619        252 VARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDR  328 (644)
T ss_pred             HHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCH
Confidence            566778888888887533221   112234445554444443366778887765533   23444455555566688898


Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchh
Q 004249          389 EKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMI  468 (765)
Q Consensus       389 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  468 (765)
                      +.....+..+-..........+.+|+.+...|+.++|...|+++...  ..              -|-.++.-  ..|..
T Consensus       329 ~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~--~~--------------fYG~LAa~--~Lg~~  390 (644)
T PRK11619        329 RGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ--RG--------------FYPMVAAQ--RLGEE  390 (644)
T ss_pred             HHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC--CC--------------cHHHHHHH--HcCCC
Confidence            88877777765444456678888999988899999999999887441  11              01111111  11211


Q ss_pred             HHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccC
Q 004249          469 EGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTT  548 (765)
Q Consensus       469 ~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g  548 (765)
                      -. +..  . .  .    ......-.....+..+..+...|+...|...+..++...      ++.....++. +....|
T Consensus       391 ~~-~~~--~-~--~----~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~------~~~~~~~la~-~A~~~g  453 (644)
T PRK11619        391 YP-LKI--D-K--A----PKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASR------SKTEQAQLAR-YAFNQQ  453 (644)
T ss_pred             CC-CCC--C-C--C----CchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CHHHHHHHHH-HHHHCC
Confidence            00 000  0 0  0    000000001123556677888999999999998887643      2233333333 666788


Q ss_pred             ChhhHHHHHHHHH
Q 004249          549 DPKLWFDGVRFMV  561 (765)
Q Consensus       549 ~~~~A~~~~~~~l  561 (765)
                      .++.|+....+..
T Consensus       454 ~~~~ai~~~~~~~  466 (644)
T PRK11619        454 WWDLSVQATIAGK  466 (644)
T ss_pred             CHHHHHHHHhhch
Confidence            8888887765543

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.21  Score=48.04  Aligned_cols=113  Identities=12%  Similarity=0.036  Sum_probs=81.7

Q ss_pred             hhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccC-
Q 004249          449 WLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYG-  527 (765)
Q Consensus       449 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-  527 (765)
                      ++...+-..+..+|...++|.+|+.....++++..++   -..+.-.++...-..+|....+..+|...+..|...... 
T Consensus       125 FLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl---DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai  201 (411)
T KOG1463|consen  125 FLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL---DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI  201 (411)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc---ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc
Confidence            3344555688899999999999999999988776442   111222444555567788899999999998888776544 


Q ss_pred             -CCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhC
Q 004249          528 -KFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLH  564 (765)
Q Consensus       528 -~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~  564 (765)
                       -.|.....+...-+.++....||..|..+|-.+++-+
T Consensus       202 YcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf  239 (411)
T KOG1463|consen  202 YCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGF  239 (411)
T ss_pred             ccCHHHHHHHHHhccceeecccccchHHHHHHHHHccc
Confidence             2244466677766767777899999999999988744

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.19  E-value=0.01  Score=51.97  Aligned_cols=61  Identities=20%  Similarity=0.325  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004249          194 KLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYL  254 (765)
Q Consensus       194 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  254 (765)
                      .+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|+..|+++.
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            3445556666666666666666666666666666666666666666666666666666553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.12  E-value=0.0007  Score=64.52  Aligned_cols=95  Identities=21%  Similarity=0.063  Sum_probs=64.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Q 004249           95 LGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGD  174 (765)
Q Consensus        95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~  174 (765)
                      -.+|..++..|.+++|++.|..++.++|.....+...+.++..+++...|+..+..++.++|+...-+-..+.....+|+
T Consensus       118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~  197 (377)
T KOG1308|consen  118 KVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN  197 (377)
T ss_pred             HHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence            34455666667777777777777777777666666777777777777777777777777777666666666666666777


Q ss_pred             HHHHHHHHHHHHhcC
Q 004249          175 TTWAMSCLSEAVKAD  189 (765)
Q Consensus       175 ~~~A~~~~~~al~~~  189 (765)
                      +.+|...+..+.+++
T Consensus       198 ~e~aa~dl~~a~kld  212 (377)
T KOG1308|consen  198 WEEAAHDLALACKLD  212 (377)
T ss_pred             hHHHHHHHHHHHhcc
Confidence            777777766666654

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.12  E-value=0.1  Score=53.91  Aligned_cols=276  Identities=12%  Similarity=0.023  Sum_probs=133.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHH
Q 004249          131 LGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKAD--------PNDFKLKFHLASL  202 (765)
Q Consensus       131 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~  202 (765)
                      .+.+..++|+++.-.......-   .+.+...+..+......|+++++..+++++...-        +......+..-.-
T Consensus         4 ~~eaaWrl~~Wd~l~~~~~~~~---~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~   80 (352)
T PF02259_consen    4 AAEAAWRLGDWDLLEEYLSQSN---EDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK   80 (352)
T ss_pred             HHHHHHhcCChhhHHHHHhhcc---CCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            3567788899998333333322   2233555556666678899999998888877641        1111111111111


Q ss_pred             HHHhCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHH--HHHHHHH-Hhc-CCCCCCHHHHHHHHHHHH
Q 004249          203 YVELGNFQRAADVYRQMVQLCPEN----IEALKMGAKLYQKSGQIESS--VDILEDY-LKG-HPTEADFGVIDLLASMLV  274 (765)
Q Consensus       203 ~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A--~~~~~~~-~~~-~p~~~~~~~~~~l~~~~~  274 (765)
                      +....+.+++..+....... +..    ...|...-..  ...+++-=  +-.++.. +.. .........|..++.+..
T Consensus        81 lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~--~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR  157 (352)
T PF02259_consen   81 LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPN--MQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR  157 (352)
T ss_pred             HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            22223333333333211100 000    0001100000  01111100  0011111 110 001111235667777777


Q ss_pred             HhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCCh--HHHHHHHHHHHHc--cc
Q 004249          275 QMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDH--AESINEIADLFKN--RE  350 (765)
Q Consensus       275 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~la~~~~~--~g  350 (765)
                      +.|.++.|...+.++...........+.+.+..+......|+..+|+..++..+.......  ......+......  ..
T Consensus       158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (352)
T PF02259_consen  158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEV  237 (352)
T ss_pred             HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccccc
Confidence            7777777777777766653222233455566666667777777777777766654111111  0000000000000  00


Q ss_pred             cHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 004249          351 LYSTALKYYHMLEANAGVHNDGCLHLKIAECSLAL------KEREKSIIYFYKALQILEDNIDARLTLASLLLED  419 (765)
Q Consensus       351 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  419 (765)
                      ..........       ....+.++..+|......      +..+++...|..+++.+|....+|..+|..+...
T Consensus       238 ~~~~~~~~~~-------~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  238 ISSTNLDKES-------KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             ccccchhhhh-------HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence            0000000000       111235667777777777      7889999999999999999999999988887654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=97.05  E-value=0.67  Score=50.36  Aligned_cols=424  Identities=9%  Similarity=-0.024  Sum_probs=229.9

Q ss_pred             CCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH---HcCCHHHHHHH
Q 004249          105 GRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI---EQGDTTWAMSC  181 (765)
Q Consensus       105 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~---~~g~~~~A~~~  181 (765)
                      +.-++=+..++.-+.+++.+...+..|..++...|++++-...-..+.++.|..+..|.....-..   ..+.-.++...
T Consensus        93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~  172 (881)
T KOG0128|consen   93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL  172 (881)
T ss_pred             ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence            344455666677777788888888899999999999999888888888888999988877544332   23667788889


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHH-------HhCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHH
Q 004249          182 LSEAVKADPNDFKLKFHLASLYV-------ELGNFQRAADVYRQMVQLCPEN-------IEALKMGAKLYQKSGQIESSV  247 (765)
Q Consensus       182 ~~~al~~~p~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~  247 (765)
                      |++++.. -.++..|...+....       ..++++.-...|.+++..-...       ...+...-..|...-..++-+
T Consensus       173 ~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~  251 (881)
T KOG0128|consen  173 FEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI  251 (881)
T ss_pred             HHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            9998863 345555555554444       4466778888888887653322       234445555666666667788


Q ss_pred             HHHHHHHhcCCCCCCHH--HHHHHH--H-HHHHhccHHHHHHHHHHHHHHhc---CCCCccHHHHHHHHHHHHhcCChhH
Q 004249          248 DILEDYLKGHPTEADFG--VIDLLA--S-MLVQMNAYDRVLKHIELVDLVYY---SGKELLLALKIKAGICHIQLGNTDK  319 (765)
Q Consensus       248 ~~~~~~~~~~p~~~~~~--~~~~l~--~-~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~  319 (765)
                      .++...+... -+....  .|....  . ......+++.|...+.+.+..+.   ...+.....+..+.......|++..
T Consensus       252 a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~r  330 (881)
T KOG0128|consen  252 ALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVR  330 (881)
T ss_pred             HHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchH
Confidence            8888777654 332211  111111  1 11233455566555444443321   1123334445555666677888888


Q ss_pred             HHHHHHhhcccCCCChHHHHHHHHHHH-HccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhcc--HHHHHHHHH
Q 004249          320 AEILLTAIHWENVSDHAESINEIADLF-KNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKE--REKSIIYFY  396 (765)
Q Consensus       320 A~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~  396 (765)
                      -...+++++... +.+...|...+... ...+-.+.+...+.+++..  .|....+|-. +.+.+..++  ...-...+.
T Consensus       331 i~l~~eR~~~E~-~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~--cp~tgdL~~r-allAleR~re~~~vI~~~l~  406 (881)
T KOG0128|consen  331 IQLIEERAVAEM-VLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRS--CPWTGDLWKR-ALLALERNREEITVIVQNLE  406 (881)
T ss_pred             HHHHHHHHHHhc-cccHHHHhhhhhhcccccccccccccccchhhcC--CchHHHHHHH-HHHHHHhcCcchhhHHHHHH
Confidence            888888887666 55577777776554 3444445555666666655  4544444432 222222222  112222233


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHc-------------CCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHH
Q 004249          397 KALQILEDNIDARLTLASLLLED-------------AKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYK  463 (765)
Q Consensus       397 ~al~~~p~~~~~~~~l~~~~~~~-------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  463 (765)
                      +.+...   ...+..........             ..+..|...|.......-+.           ...++-..|.+..
T Consensus       407 ~~ls~~---~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt-----------~~~~~q~wA~~E~  472 (881)
T KOG0128|consen  407 KDLSMT---VELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDT-----------RTEVLQLWAQVEA  472 (881)
T ss_pred             HHHHHH---HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhh-----------HHHHHHHHHHHHH
Confidence            332210   00111111111111             22444444444333211110           0122223333333


Q ss_pred             -hcchhHHHHHhhHHHHhhhcccccccChhhHHH-HHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHh
Q 004249          464 -AKGMIEGFVDMLLPLVCESSHQEETFNHEEHRL-LIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGA  541 (765)
Q Consensus       464 -~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  541 (765)
                       ..++.+.+..+....+.         ....+.. .++....+-...|+...++.++++++...  ..|++...++....
T Consensus       473 sl~~nmd~~R~iWn~imt---------y~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~--~~~~~~~ev~~~~~  541 (881)
T KOG0128|consen  473 SLLKNMDKAREIWNFIMT---------YGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQV--VDPEDALEVLEFFR  541 (881)
T ss_pred             HHhhchhhhhHhhhcccc---------CCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcC--cCchhHHHHHHHHH
Confidence             24555666655443332         1112232 56666666667788888998888888643  23443333333333


Q ss_pred             hcccccCChhhHHHHHHH
Q 004249          542 QIPCNTTDPKLWFDGVRF  559 (765)
Q Consensus       542 ~~~~~~g~~~~A~~~~~~  559 (765)
                      ......|.++.......+
T Consensus       542 r~Ere~gtl~~~~~~~~~  559 (881)
T KOG0128|consen  542 RFEREYGTLESFDLCPEK  559 (881)
T ss_pred             HHHhccccHHHHhhhHHh
Confidence            355556666655544433

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.05  E-value=0.023  Score=50.12  Aligned_cols=61  Identities=15%  Similarity=0.086  Sum_probs=29.5

Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc
Q 004249          339 INEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL  402 (765)
Q Consensus       339 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  402 (765)
                      -..++.+....|.+++|+..++.....   .-.+......|+++...|+.++|+..|+++++.+
T Consensus       129 ~lRLArvq~q~~k~D~AL~~L~t~~~~---~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         129 ALRLARVQLQQKKADAALKTLDTIKEE---SWAAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhccccc---cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            344555555555555555555433211   1122233445555555555555555555555554

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.04  E-value=0.43  Score=48.02  Aligned_cols=41  Identities=12%  Similarity=0.029  Sum_probs=33.3

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHH
Q 004249          610 GHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLA  651 (765)
Q Consensus       610 g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  651 (765)
                      +..++.+|+|.++..+-.=..+..| +|.+.-.+|.+.+...
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k  509 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENK  509 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHh
Confidence            4456778999999988888888999 8888888998877443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.00  E-value=0.052  Score=54.57  Aligned_cols=110  Identities=13%  Similarity=-0.002  Sum_probs=67.1

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHcCC------------HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004249          112 SVLHEVIRLEEELPNSYHILGLVHDALGN------------TAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAM  179 (765)
Q Consensus       112 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~  179 (765)
                      .-|++.++.+|.+..+|..+.......-.            .+.-+..+++|++.+|++...+..+-....+..+.++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45677788888888888888765544322            344556666666666666666666666666666666666


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHH
Q 004249          180 SCLSEAVKADPNDFKLKFHLASLYVE---LGNFQRAADVYRQMVQ  221 (765)
Q Consensus       180 ~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~  221 (765)
                      .-+++++..+|+++..|...-.....   .-.+......|.+++.
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~  130 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR  130 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence            66666666666666665544443332   2234555555555543

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.98  E-value=0.54  Score=48.01  Aligned_cols=86  Identities=13%  Similarity=0.064  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcc--cccCChhhHHHHHHHHHHhCCCchhh
Q 004249          493 EHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIP--CNTTDPKLWFDGVRFMVKLHPHRLTT  570 (765)
Q Consensus       493 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~A~~~~~~~l~~~p~~~~~  570 (765)
                      +....-..+-..+.+.|-+.+|...|.+...+-    |.... ++.....+-  ...-+...+..+|..++..+-.++..
T Consensus       458 ~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp----p~sl~-l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~l  532 (568)
T KOG2396|consen  458 DSVTLKSKYLDWAYESGGYKKARKVYKSLQELP----PFSLD-LFRKMIQFEKEQESCNLANIREYYDRALREFGADSDL  532 (568)
T ss_pred             ceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC----CccHH-HHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHH
Confidence            333444445566778889999999998887765    22222 222111011  11223777889999999998899999


Q ss_pred             hHHHHHHHhhhhh
Q 004249          571 WNRYYKLVSRFEK  583 (765)
Q Consensus       571 ~~~~~~~~~~~~~  583 (765)
                      |..|...-...|.
T Consensus       533 w~~y~~~e~~~g~  545 (568)
T KOG2396|consen  533 WMDYMKEELPLGR  545 (568)
T ss_pred             HHHHHHhhccCCC
Confidence            9988776655444

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.34  Score=45.01  Aligned_cols=187  Identities=12%  Similarity=0.083  Sum_probs=137.4

Q ss_pred             cCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-CHHHHHHHH
Q 004249          104 LGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG-DTTWAMSCL  182 (765)
Q Consensus       104 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~  182 (765)
                      ..+|.++..+|+.++..+..                 -+.|+..-..++.++|.+-.+|...-.++..++ +..+-++++
T Consensus        39 te~fr~~m~YfRAI~~~~E~-----------------S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l  101 (318)
T KOG0530|consen   39 TEDFRDVMDYFRAIIAKNEK-----------------SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYL  101 (318)
T ss_pred             chhHHHHHHHHHHHHhcccc-----------------CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHH
Confidence            34567777777766655544                 455666777788899999988887666665543 567888999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 004249          183 SEAVKADPNDFKLKFHLASLYVELGNFQ-RAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA  261 (765)
Q Consensus       183 ~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  261 (765)
                      .+++..+|.+..+|...-.+....|++. .-+++.+.++..+.++-.+|...-.+....+.++.-+.+..++++.+-.+.
T Consensus       102 ~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NN  181 (318)
T KOG0530|consen  102 DEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNN  181 (318)
T ss_pred             HHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc
Confidence            9999999999999999999999999888 888999999999999999999999999999999999999999998776554


Q ss_pred             CHHHHHHHHHHHHH-h-----ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh
Q 004249          262 DFGVIDLLASMLVQ-M-----NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQ  313 (765)
Q Consensus       262 ~~~~~~~l~~~~~~-~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  313 (765)
                      .  +|+..--+... .     -..+.-+.+..+.+..    .|.+..+|..+.-++..
T Consensus       182 S--AWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~----vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  182 S--AWNQRYFVITNTKGVISKAELERELNYTKDKILL----VPNNESAWNYLKGLLEL  233 (318)
T ss_pred             c--hhheeeEEEEeccCCccHHHHHHHHHHHHHHHHh----CCCCccHHHHHHHHHHh
Confidence            4  34322111111 1     1234445566666666    56666677666555543

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.92  E-value=0.067  Score=53.79  Aligned_cols=161  Identities=12%  Similarity=0.036  Sum_probs=100.5

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004249          182 LSEAVKADPNDFKLKFHLASLYVELG------------NFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDI  249 (765)
Q Consensus       182 ~~~al~~~p~~~~~~~~la~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  249 (765)
                      +++.+..+|.+.++|..+....-..-            -.+.-+.+|++|++.+|++...+..+-....+..+.++....
T Consensus         8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~   87 (321)
T PF08424_consen    8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK   87 (321)
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            44555556666666655554443321            145667888999999999988888888888888888888899


Q ss_pred             HHHHHhcCCCCCCHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHh
Q 004249          250 LEDYLKGHPTEADFGVIDLLASMLVQ---MNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTA  326 (765)
Q Consensus       250 ~~~~~~~~p~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  326 (765)
                      +++++..+|++..  +|..+......   .-.+......|.+++..........              .........++ 
T Consensus        88 we~~l~~~~~~~~--LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~--------------~~~~~~~~~~e-  150 (321)
T PF08424_consen   88 WEELLFKNPGSPE--LWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR--------------MTSHPDLPELE-  150 (321)
T ss_pred             HHHHHHHCCCChH--HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc--------------cccccchhhHH-
Confidence            9999999888766  44433332222   2357788888888776632110000              00000000000 


Q ss_pred             hcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhc
Q 004249          327 IHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEAN  365 (765)
Q Consensus       327 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  365 (765)
                            .....++..+...+.+.|..+.|+..++.+++.
T Consensus       151 ------~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  151 ------EFMLYVFLRLCRFLRQAGYTERAVALWQALLEF  183 (321)
T ss_pred             ------HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence                  111345666677778888888888888888877

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.0091  Score=56.84  Aligned_cols=105  Identities=18%  Similarity=0.175  Sum_probs=90.7

Q ss_pred             hHHHHHHHHHHHHccccHHHHHHHHHHHHhccC-CCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHH
Q 004249          335 HAESINEIADLFKNRELYSTALKYYHMLEANAG-VHN-DGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTL  412 (765)
Q Consensus       335 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  412 (765)
                      .+..+-.-|.-|++.++|..|+..|.+.++... +|+ +...|.+.|.|....|+|..|+....+++..+|.+..++++-
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            455667778999999999999999999997731 222 456788999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHhcCCCCCccccc
Q 004249          413 ASLLLEDAKDEEAISLLTPPMSLENKY  439 (765)
Q Consensus       413 ~~~~~~~g~~~~A~~~~~~~~~~~~~~  439 (765)
                      +.++..+.++.+|...++..+..+...
T Consensus       160 Akc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  160 AKCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            999999999999999999887765443

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.89  E-value=0.39  Score=45.06  Aligned_cols=111  Identities=13%  Similarity=0.099  Sum_probs=80.9

Q ss_pred             hHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccC-CCC
Q 004249          452 IRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYG-KFP  530 (765)
Q Consensus       452 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~  530 (765)
                      ...-..+..++++.|+|.+|+......+.+..+   .-..+.-.+.+..-..+|....+..++..-+..|...... .-|
T Consensus       125 ~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk---~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP  201 (421)
T COG5159         125 LELECKLIYLLYKTGKYSDALALINPLLHELKK---YDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP  201 (421)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh---hcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC
Confidence            344457788999999999999999888876533   1133444556666677888888988888888877765543 223


Q ss_pred             -chHHHHHHHHhhcccccCChhhHHHHHHHHHHhCC
Q 004249          531 -VEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHP  565 (765)
Q Consensus       531 -~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p  565 (765)
                       .-...+..+-+...+...+|.-|..+|-.+++-+.
T Consensus       202 pqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft  237 (421)
T COG5159         202 PQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT  237 (421)
T ss_pred             HHHHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence             33556677777677889999999999999987543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.83  E-value=0.003  Score=38.83  Aligned_cols=32  Identities=25%  Similarity=0.315  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC
Q 004249          373 CLHLKIAECSLALKEREKSIIYFYKALQILED  404 (765)
Q Consensus       373 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  404 (765)
                      .+|+.+|.++..+|++++|..+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            56788888888888888888888888888874

...

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.76  E-value=0.18  Score=43.49  Aligned_cols=143  Identities=13%  Similarity=0.051  Sum_probs=102.2

Q ss_pred             HHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCC-CCh--HHHHHHHHHHH
Q 004249          270 ASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENV-SDH--AESINEIADLF  346 (765)
Q Consensus       270 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~--~~~~~~la~~~  346 (765)
                      +.-+.+.+..++|+..|....+.  .....+.-+....+.+....|+...|+..|..+-...+ |.-  --+...-+.++
T Consensus        65 AL~lA~~~k~d~Alaaf~~lekt--g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL  142 (221)
T COG4649          65 ALKLAQENKTDDALAAFTDLEKT--GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL  142 (221)
T ss_pred             HHHHHHcCCchHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH
Confidence            33345567788999999887765  11344566778889999999999999999999754331 111  12455667788


Q ss_pred             HccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004249          347 KNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLL  416 (765)
Q Consensus       347 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  416 (765)
                      +..|-|++-....+.+-.-. +|-...+...||..-.+.|++.+|..+|..+.. +...+......+.+.
T Consensus       143 vD~gsy~dV~srvepLa~d~-n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m  210 (221)
T COG4649         143 VDNGSYDDVSSRVEPLAGDG-NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM  210 (221)
T ss_pred             hccccHHHHHHHhhhccCCC-ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence            99999999888777654332 555567788899999999999999999999887 444444444444443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.75  E-value=0.59  Score=46.66  Aligned_cols=168  Identities=15%  Similarity=0.111  Sum_probs=119.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHc----CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH---
Q 004249           99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDAL----GNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE---  171 (765)
Q Consensus        99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~---  171 (765)
                      ......+++..|...+..+-..  .++.....++.+|..-    .+..+|..+|..+..  ...+.+.+.+|.+|..   
T Consensus        49 ~~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~g  124 (292)
T COG0790          49 AGSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRG  124 (292)
T ss_pred             ccccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCC
Confidence            3345667788888888776552  3346777888887753    467889999986554  4677888889998877   


Q ss_pred             -cCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Q 004249          172 -QGDTTWAMSCLSEAVKADPND-FKLKFHLASLYVELG-------NFQRAADVYRQMVQLCPENIEALKMGAKLYQK---  239 (765)
Q Consensus       172 -~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---  239 (765)
                       ..+..+|..+|+++....... ..+...++.+|..-.       +...|...|.++-...  ++.+...+|.+|..   
T Consensus       125 v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~G  202 (292)
T COG0790         125 VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLG  202 (292)
T ss_pred             cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCC
Confidence             458899999999998864333 344777887777642       2337888888887664  67788888877765   


Q ss_pred             -cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc
Q 004249          240 -SGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMN  277 (765)
Q Consensus       240 -~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~  277 (765)
                       ..++.+|..+|.++.+...  ..  ..+.++ ++...|
T Consensus       203 v~~d~~~A~~wy~~Aa~~g~--~~--a~~~~~-~~~~~g  236 (292)
T COG0790         203 VPRDLKKAFRWYKKAAEQGD--GA--ACYNLG-LMYLNG  236 (292)
T ss_pred             CCcCHHHHHHHHHHHHHCCC--HH--HHHHHH-HHHhcC
Confidence             3478899999999888765  22  566777 666655

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.71  E-value=0.22  Score=46.15  Aligned_cols=192  Identities=16%  Similarity=0.220  Sum_probs=117.6

Q ss_pred             HHcCCHHHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CCCCH-HHHHHHHHHHHH
Q 004249          102 YALGRYEEAISVLHEVIRLEEELP----NSYHILGLVHDALGNTAKAMGCYWLAACY-----KQKDS-SLWKLIFPWLIE  171 (765)
Q Consensus       102 ~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~p~~~-~~~~~la~~~~~  171 (765)
                      +...+.++|+..|+++++..|...    .++..+..+++.+|++++-...|.+.+..     ..+.. .....+-..-..
T Consensus        38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt  117 (440)
T KOG1464|consen   38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST  117 (440)
T ss_pred             ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence            345689999999999999988765    46777888999999999999988877642     11111 111111111112


Q ss_pred             cCCHHHHHHHHHHHHhc--CCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------------HHHHHHH
Q 004249          172 QGDTTWAMSCLSEAVKA--DPNDFK----LKFHLASLYVELGNFQRAADVYRQMVQLCPEN------------IEALKMG  233 (765)
Q Consensus       172 ~g~~~~A~~~~~~al~~--~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~l  233 (765)
                      ..+.+--..+|+..+..  +..+..    .-..+|.+|+..|+|.+-...+++.-......            .+++..-
T Consensus       118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE  197 (440)
T KOG1464|consen  118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE  197 (440)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence            22333333334333322  122222    23468888888888888877777765443221            2345555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHH----HHHHHHHHhccHHHHHHHHHHHHHHh
Q 004249          234 AKLYQKSGQIESSVDILEDYLKGHPTEADFGVID----LLASMLVQMNAYDRVLKHIELVDLVY  293 (765)
Q Consensus       234 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~  293 (765)
                      ..+|..+++-.+-..+|++++.....-+.+.+.-    .=|..+.+.|+|++|-.-|-.+.+.+
T Consensus       198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY  261 (440)
T KOG1464|consen  198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY  261 (440)
T ss_pred             hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence            6777777777777888888877655444332211    12345667788888877776666654

>PRK11619 lytic murein transglycosylase; Provisional

Probab=96.70  E-value=1.4  Score=48.79  Aligned_cols=366  Identities=10%  Similarity=-0.049  Sum_probs=196.0

Q ss_pred             HHHHHHHhhCCCchHHHHHHHHHH---HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004249          113 VLHEVIRLEEELPNSYHILGLVHD---ALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKAD  189 (765)
Q Consensus       113 ~~~~~l~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  189 (765)
                      -+...+..+|+.|..-........   ..+++..-+.++    ...|.+....+.++......|+.++|.....++....
T Consensus        84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g  159 (644)
T PRK11619         84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG  159 (644)
T ss_pred             HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence            445556678887765554444333   345555555422    2347888888888899999999988888887776655


Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-----------HHH-HcCCHHHHHHHHHHHHhcC
Q 004249          190 PNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAK-----------LYQ-KSGQIESSVDILEDYLKGH  257 (765)
Q Consensus       190 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-----------~~~-~~g~~~~A~~~~~~~~~~~  257 (765)
                      ...+.....+-..+...|........-+--+.+..++......+..           ... -..+...+...+    ...
T Consensus       160 ~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~----~~~  235 (644)
T PRK11619        160 KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFA----RTT  235 (644)
T ss_pred             CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHh----hcc
Confidence            4444444444444444343333221111111111222221111111           111 112222222211    111


Q ss_pred             CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHH
Q 004249          258 PTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAE  337 (765)
Q Consensus       258 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  337 (765)
                      |.+........++..-....+.+.|...+.+......-..+....++..++.-....+...+|...+.......  .+..
T Consensus       236 ~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~  313 (644)
T PRK11619        236 GPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTS  313 (644)
T ss_pred             CCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcH
Confidence            11111111223333344566778899888876555221122223334444444334333677888887764332  2333


Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004249          338 SINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLL  417 (765)
Q Consensus       338 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  417 (765)
                      .......+....++++.+...+..+-..  ........+.+|+.+...|+.++|...|+++..  +.+  .+-.++.-  
T Consensus       314 ~~e~r~r~Al~~~dw~~~~~~i~~L~~~--~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~--fYG~LAa~--  385 (644)
T PRK11619        314 LLERRVRMALGTGDRRGLNTWLARLPME--AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRG--FYPMVAAQ--  385 (644)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHhcCHh--hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--cHHHHHHH--
Confidence            4444445556888999888888876544  345677889999999999999999999999854  332  22223322  


Q ss_pred             HcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHH
Q 004249          418 EDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLL  497 (765)
Q Consensus       418 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~  497 (765)
                      ++|..-.    +..  ...|..      .... ...-....+..+...|....|......++..           .+...
T Consensus       386 ~Lg~~~~----~~~--~~~~~~------~~~~-~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-----------~~~~~  441 (644)
T PRK11619        386 RLGEEYP----LKI--DKAPKP------DSAL-TQGPEMARVRELMYWNMDNTARSEWANLVAS-----------RSKTE  441 (644)
T ss_pred             HcCCCCC----CCC--CCCCch------hhhh-ccChHHHHHHHHHHCCCHHHHHHHHHHHHhc-----------CCHHH
Confidence            2342200    000  000000      0000 0122356778888999999999887776642           12344


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHH
Q 004249          498 IIDLCKTLASLHRYEDAIKIINL  520 (765)
Q Consensus       498 ~~~l~~~~~~~~~~~~A~~~~~~  520 (765)
                      ...++......|.++.++....+
T Consensus       442 ~~~la~~A~~~g~~~~ai~~~~~  464 (644)
T PRK11619        442 QAQLARYAFNQQWWDLSVQATIA  464 (644)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHhh
Confidence            56666777778888888776543

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=96.63  E-value=1.9  Score=49.42  Aligned_cols=371  Identities=11%  Similarity=0.003  Sum_probs=205.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHc----C---CHHHHHHHHHHHhccCCCCHHHHHH
Q 004249           95 LGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDAL----G---NTAKAMGCYWLAACYKQKDSSLWKL  164 (765)
Q Consensus        95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~----g---~~~~A~~~~~~a~~~~p~~~~~~~~  164 (765)
                      +..-.+++..+.|+.|+..|+++....|...   ++.+..|.....+    |   .+++|+..|++.- -.|.-|--|..
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  557 (932)
T PRK13184        479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLG  557 (932)
T ss_pred             ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHh
Confidence            3444668889999999999999999888654   6788888877643    3   4778888888754 35677777888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHhCCCCHHHHH---HHH--
Q 004249          165 IFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL-----GNFQRAADVYRQMVQLCPENIEALK---MGA--  234 (765)
Q Consensus       165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~---~la--  234 (765)
                      .|.+|.++|++++-++++.-+++..|..|..-...-.+..++     .+-..|....--++...|.....-.   .+-  
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  637 (932)
T PRK13184        558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEIL  637 (932)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            999999999999999999999999988875433322222221     1123344444444555554321100   000  


Q ss_pred             --------------------------HHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 004249          235 --------------------------KLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIEL  288 (765)
Q Consensus       235 --------------------------~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  288 (765)
                                                .+-+-.|..---...++++....|-    +++...-.+...+|.++-+.+....
T Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  713 (932)
T PRK13184        638 YHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDY----RALADIFYVACDLGNWEFFSQFSDI  713 (932)
T ss_pred             HhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccH----HHHHHHHHHHHHhccHHHHHHHHHH
Confidence                                      0111123333333344444444332    2444555556777888766666555


Q ss_pred             HHHHhcCCCCccHHH----------HHHHHHHHHhcCChhHHHHHHHhhcccCCCChHH-HHHHHHHHHHccccHH---H
Q 004249          289 VDLVYYSGKELLLAL----------KIKAGICHIQLGNTDKAEILLTAIHWENVSDHAE-SINEIADLFKNRELYS---T  354 (765)
Q Consensus       289 ~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~---~  354 (765)
                      ....+.. ...+...          +..-..+.....+++++.+.+..+    ++.... ++...+.-....++.+   .
T Consensus       714 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (932)
T PRK13184        714 LAEVSDE-ITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT----DPTLILYAFDLFAIQALLDEEGESIIQ  788 (932)
T ss_pred             HHHHhhh-ccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC----CHHHHHHHHHHHHHHHHHhccchHHHH
Confidence            4432110 1111111          222223444555777777655554    122221 1112222222223322   3


Q ss_pred             HHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCC
Q 004249          355 ALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQ--ILEDNIDARLTLASLLLEDAKDEEAISLLTPP  432 (765)
Q Consensus       355 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  432 (765)
                      +++.+.+....  .............+|.-..++++|-+.+...-.  ...+...+....|--+...++-+-|...|...
T Consensus       789 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  866 (932)
T PRK13184        789 LLQLIYDYVSE--EERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGC  866 (932)
T ss_pred             HHHHHHhccCC--hhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhc
Confidence            33333222211  111223445566778888899999887743211  11334466777777777788888999888877


Q ss_pred             CCcccccc-----------CcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHH
Q 004249          433 MSLENKYV-----------NSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPL  478 (765)
Q Consensus       433 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  478 (765)
                      .+..+-+.           ......+||.....+..+.-.+.-.|+.++- +.++.+
T Consensus       867 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  922 (932)
T PRK13184        867 REDALFPRSLDGDIFDYLGKISDNLSWWEKKQLLRQKFLYFHCLGDSEER-DKYRQA  922 (932)
T ss_pred             cccccCcchhhccccchhccccccccHHHHHHHHHHHHHHHHHhCChhHh-HHHHHH
Confidence            63222110           0123345666666666666666666666554 344443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.63  E-value=0.091  Score=53.41  Aligned_cols=166  Identities=13%  Similarity=0.032  Sum_probs=90.2

Q ss_pred             HHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---H
Q 004249          118 IRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF---K  194 (765)
Q Consensus       118 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~  194 (765)
                      ++.+|-+.+++..++.++..+|+...|.+++++++-.-.......+..-..-...|.   +.--     -..+.|.   .
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~---~rL~-----~~~~eNR~ffl  104 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN---CRLD-----YRRPENRQFFL  104 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc---cccC-----CccccchHHHH
Confidence            466888888888888888888888888888888753210000000000000000000   0000     0012222   3


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-C----CCCHHHHH
Q 004249          195 LKFHLASLYVELGNFQRAADVYRQMVQLCPE-NIEA-LKMGAKLYQKSGQIESSVDILEDYLKGHP-T----EADFGVID  267 (765)
Q Consensus       195 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~----~~~~~~~~  267 (765)
                      +++.....+.+.|.+..|.++.+-.+.++|. ++-. +..+=....+.++++--+..++....... +    -+.  ..+
T Consensus       105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn--~a~  182 (360)
T PF04910_consen  105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN--FAF  182 (360)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc--HHH
Confidence            4455566666777777777777777777776 5433 33333333456666666666655443111 1    112  445


Q ss_pred             HHHHHHHHhccH---------------HHHHHHHHHHHHHh
Q 004249          268 LLASMLVQMNAY---------------DRVLKHIELVDLVY  293 (765)
Q Consensus       268 ~l~~~~~~~~~~---------------~~A~~~~~~~~~~~  293 (765)
                      ..+.++...++.               +.|...+.+++..+
T Consensus       183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f  223 (360)
T PF04910_consen  183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF  223 (360)
T ss_pred             HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence            666666666666               77888888887773

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.57  E-value=0.28  Score=49.88  Aligned_cols=145  Identities=17%  Similarity=0.235  Sum_probs=96.7

Q ss_pred             HhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------------------------CCC---HHHHHHHHHH
Q 004249          186 VKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLC--------------------------PEN---IEALKMGAKL  236 (765)
Q Consensus       186 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~---~~~~~~la~~  236 (765)
                      +..+|...+++..++.++..+|+...|.+.+++++-..                          +.|   -.+++.....
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~  112 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS  112 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence            45578888888888888888888888888777775321                          112   1245566677


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-CCccHHHHHHHHHHHHhc
Q 004249          237 YQKSGQIESSVDILEDYLKGHPT-EADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSG-KELLLALKIKAGICHIQL  314 (765)
Q Consensus       237 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~  314 (765)
                      +.+.|-+.-|.++.+-.+.++|. ++- .+...+-....+.++++--+..++......... -...+...+..+.++...
T Consensus       113 L~~RG~~rTAlE~~KlLlsLdp~~DP~-g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l  191 (360)
T PF04910_consen  113 LGRRGCWRTALEWCKLLLSLDPDEDPL-GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRL  191 (360)
T ss_pred             HHhcCcHHHHHHHHHHHHhcCCCCCcc-hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHh
Confidence            78889999999999999999988 443 345555556667788877777777655421100 011234556667777777


Q ss_pred             CCh---------------hHHHHHHHhhcccC
Q 004249          315 GNT---------------DKAEILLTAIHWEN  331 (765)
Q Consensus       315 ~~~---------------~~A~~~~~~~~~~~  331 (765)
                      ++.               +.|...+.+++...
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f  223 (360)
T PF04910_consen  192 EKEESSQSSAQSGRSENSESADEALQKAILRF  223 (360)
T ss_pred             cCccccccccccccccchhHHHHHHHHHHHHh
Confidence            776               67777777776544

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.55  E-value=0.05  Score=46.85  Aligned_cols=104  Identities=18%  Similarity=0.199  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI  170 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  170 (765)
                      +..++.........++.+++..++.-+....|..++.-..-|.++...|++.+|+..|+.+....|..+.+--.++.|+.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            44566777788888899999999998888999999999999999999999999999999988888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHH
Q 004249          171 EQGDTTWAMSCLSEAVKADPNDFKLK  196 (765)
Q Consensus       171 ~~g~~~~A~~~~~~al~~~p~~~~~~  196 (765)
                      .+|+..-= .+-..+++..+ ++.+.
T Consensus        90 ~~~D~~Wr-~~A~evle~~~-d~~a~  113 (160)
T PF09613_consen   90 ALGDPSWR-RYADEVLESGA-DPDAR  113 (160)
T ss_pred             HcCChHHH-HHHHHHHhcCC-ChHHH
Confidence            88886432 22334444333 44443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.50  E-value=0.0035  Score=59.96  Aligned_cols=93  Identities=15%  Similarity=0.004  Sum_probs=76.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q 004249          132 GLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQR  211 (765)
Q Consensus       132 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  211 (765)
                      +.-.+..|.+++|++.|..++.++|.....+...+.+++.+++...|+.-+..++.++|+....+-..+.....+|++.+
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~  200 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE  200 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence            33445567888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhCC
Q 004249          212 AADVYRQMVQLCP  224 (765)
Q Consensus       212 A~~~~~~al~~~p  224 (765)
                      |...+..+.+++-
T Consensus       201 aa~dl~~a~kld~  213 (377)
T KOG1308|consen  201 AAHDLALACKLDY  213 (377)
T ss_pred             HHHHHHHHHhccc
Confidence            8888888877653

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.47  E-value=0.031  Score=44.39  Aligned_cols=103  Identities=20%  Similarity=0.267  Sum_probs=65.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 004249           97 DASLHYALGRYEEAISVLHEVIRLEEELPN---SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG  173 (765)
Q Consensus        97 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  173 (765)
                      +|..++..|++-+|+++.+..+...+++..   .+..-|.++..+            +...+..+...-+.         
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~yL---------   60 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRYL---------   60 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHHH---------
Confidence            467789999999999999999998887764   344445555432            22222112222221         


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004249          174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL  222 (765)
Q Consensus       174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  222 (765)
                        -.++++|.++..+.|..+..++.+|.-+.....|++++.-.++++..
T Consensus        61 --l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   61 --LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             --HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence              23566677777777766667777776666666677777666666654

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.45  E-value=0.43  Score=44.39  Aligned_cols=116  Identities=16%  Similarity=0.132  Sum_probs=68.3

Q ss_pred             HHHHHHHHhcCChhHHHHHHHhhcccCC-----------CChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHH
Q 004249          305 IKAGICHIQLGNTDKAEILLTAIHWENV-----------SDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGC  373 (765)
Q Consensus       305 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  373 (765)
                      ..+|.+++..+++.+-.+.++++.....           ..-.++|..-...|..+++...-..+|++++.+...-..|.
T Consensus       149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl  228 (440)
T KOG1464|consen  149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL  228 (440)
T ss_pred             chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence            4566666666666666655555432111           11123444445677777777777888888886632222333


Q ss_pred             HHHH----HHHHHHHhccHHHHHHHHHHHHHHcC-----CCHHH--HHHHHHHHHHcC
Q 004249          374 LHLK----IAECSLALKEREKSIIYFYKALQILE-----DNIDA--RLTLASLLLEDA  420 (765)
Q Consensus       374 ~~~~----la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~--~~~l~~~~~~~g  420 (765)
                      +.-.    =|..+.+.|++++|-..|-.+.+...     ....+  +..|+.++.+.|
T Consensus       229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG  286 (440)
T ss_pred             HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence            3322    25567888999999988888887642     22222  334666666655

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.45  E-value=0.0078  Score=36.57  Aligned_cols=33  Identities=21%  Similarity=0.434  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCC
Q 004249          373 CLHLKIAECSLALKEREKSIIYFYKALQILEDN  405 (765)
Q Consensus       373 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  405 (765)
                      ++++.+|.++...|++++|+..|++++...|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            356778888888888888888888888888763

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.38  E-value=1.8  Score=46.14  Aligned_cols=194  Identities=12%  Similarity=-0.007  Sum_probs=102.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH----------HHHHHHH
Q 004249          100 LHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLW----------KLIFPWL  169 (765)
Q Consensus       100 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~----------~~la~~~  169 (765)
                      .+...=..++|+++.+    .+| ++..|..++......-.++.|...|-+.-... .- ...          ...+.+-
T Consensus       672 ~Lve~vgledA~qfiE----dnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-Gi-k~vkrl~~i~s~~~q~aei~  744 (1189)
T KOG2041|consen  672 NLVEAVGLEDAIQFIE----DNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-GI-KLVKRLRTIHSKEQQRAEIS  744 (1189)
T ss_pred             HHHHHhchHHHHHHHh----cCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-ch-hHHHHhhhhhhHHHHhHhHh
Confidence            3444445666666543    344 58899999998888888888888887653321 11 111          1233444


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 004249          170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE--NIEALKMGAKLYQKSGQIESSV  247 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~  247 (765)
                      .--|++++|.+.|-.+-.   .+     .-..++...|+|-...+.++..-.-..+  -..++..+|..+..+..|++|.
T Consensus       745 ~~~g~feeaek~yld~dr---rD-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~  816 (1189)
T KOG2041|consen  745 AFYGEFEEAEKLYLDADR---RD-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAA  816 (1189)
T ss_pred             hhhcchhHhhhhhhccch---hh-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445788888887744322   11     1223445566666655555443211111  1356667777777777777777


Q ss_pred             HHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHh
Q 004249          248 DILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTA  326 (765)
Q Consensus       248 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  326 (765)
                      ++|...-.          ...++.+++....|++-..+.+    .    -|......-.+|..+...|.-++|.+.|-+
T Consensus       817 ~yY~~~~~----------~e~~~ecly~le~f~~LE~la~----~----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  817 KYYSYCGD----------TENQIECLYRLELFGELEVLAR----T----LPEDSELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             HHHHhccc----------hHhHHHHHHHHHhhhhHHHHHH----h----cCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence            77655321          1144455555554444222221    1    122333334445555555555555555443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.38  E-value=0.014  Score=54.71  Aligned_cols=64  Identities=16%  Similarity=0.129  Sum_probs=33.7

Q ss_pred             HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004249          137 ALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLA  200 (765)
Q Consensus       137 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  200 (765)
                      ..|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+
T Consensus       128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            3455555555555555555555555555555555555555555555555555555555544443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.32  E-value=0.4  Score=47.82  Aligned_cols=131  Identities=15%  Similarity=0.064  Sum_probs=102.2

Q ss_pred             cCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHcC-----
Q 004249          104 LGRYEEAISVLHEVIRLEEELPNSYHILGLVHDA----LGNTAKAMGCYWLAACYKQKD-SSLWKLIFPWLIEQG-----  173 (765)
Q Consensus       104 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~g-----  173 (765)
                      ..+..+|...|+.+  ....++.+.+.+|.+|..    ..+..+|..+|.++....-.. ..+...++.+|..-.     
T Consensus        90 ~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~  167 (292)
T COG0790          90 SRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV  167 (292)
T ss_pred             cccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence            35688999999954  445678899999999987    459999999999999875333 344778888877642     


Q ss_pred             --CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004249          174 --DTTWAMSCLSEAVKADPNDFKLKFHLASLYVE----LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSG  241 (765)
Q Consensus       174 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  241 (765)
                        +...|...|.++....  ++.+.+.+|.+|..    ..++.+|..+|.++.+...  ....+.++ ++...|
T Consensus       168 ~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         168 AYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             cHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence              2337899999888765  78899999988865    3489999999999998766  77888888 666666

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=96.31  E-value=1.6  Score=44.83  Aligned_cols=98  Identities=10%  Similarity=0.063  Sum_probs=58.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004249          156 QKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAK  235 (765)
Q Consensus       156 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  235 (765)
                      |-+...+..+-.++.....++-....+.+++... .+..+++.++.+|... ..++-....++.++.+-++...-..|+.
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~  140 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD  140 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence            4444445555555555555555566666666643 3455666677777666 4455566666666666666665666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhc
Q 004249          236 LYQKSGQIESSVDILEDYLKG  256 (765)
Q Consensus       236 ~~~~~g~~~~A~~~~~~~~~~  256 (765)
                      .|.+ ++.+.+..+|.+++..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yr  160 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYR  160 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHH
Confidence            6655 6666666666666543

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=96.15  E-value=1.8  Score=43.96  Aligned_cols=128  Identities=16%  Similarity=0.085  Sum_probs=109.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249           99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWA  178 (765)
Q Consensus        99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A  178 (765)
                      ...+..|+.-.|-.-+..+++..|.+|......+.+...+|.|+.+...+..+-..-.....+...+-+....+|++++|
T Consensus       297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence            44578899999999999999999999999999999999999999999998766554444445566667778899999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 004249          179 MSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN  226 (765)
Q Consensus       179 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  226 (765)
                      .....-++...-.++++...-+.....+|-++++...+++.+.++|..
T Consensus       377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            999999988777888887777777888899999999999999998765

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.14  E-value=0.46  Score=49.12  Aligned_cols=242  Identities=12%  Similarity=0.053  Sum_probs=135.1

Q ss_pred             ChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchh
Q 004249          490 NHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLT  569 (765)
Q Consensus       490 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~  569 (765)
                      ..|.+.-.++..+..+...|+.+.|+.+++..+...  ...-..-..+..++ ++.-+.+|..|...+..+.+..--+-.
T Consensus       262 ~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~--~kQ~~~l~~fE~aw-~~v~~~~~~~aad~~~~L~desdWS~a  338 (546)
T KOG3783|consen  262 RYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIR--MKQVKSLMVFERAW-LSVGQHQYSRAADSFDLLRDESDWSHA  338 (546)
T ss_pred             hCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHH--HHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHhhhhhhHH
Confidence            556777777888888888888888888888776511  00011234556666 778889999999999999887655544


Q ss_pred             hhHHHH-HHH-------hhhhhhhhHHHHHHHH---HHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChH
Q 004249          570 TWNRYY-KLV-------SRFEKIFSKHAKLLRN---VRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPL  638 (765)
Q Consensus       570 ~~~~~~-~~~-------~~~~~~~~~a~~~~~~---~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~  638 (765)
                      .+.-+. .++       ...+...+.+..+...   .+...|.+.+.--         .-..+|-. |.+-..++|..+.
T Consensus       339 ~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~---------f~~RKver-f~~~~~~~~~~~l  408 (546)
T KOG3783|consen  339 FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK---------FIVRKVER-FVKRGPLNASILL  408 (546)
T ss_pred             HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH---------HHHHHHHH-Hhccccccccccc
Confidence            433333 111       1111111233333322   2333333322211         11112211 1111111222222


Q ss_pred             HHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchH--HHhHHHHHHHhchHHHHHHHHHHHHhhhhccCC
Q 004249          639 INLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEA--LYNIARAYHHVGLVSLAASYYEKVLAMYQKDCI  716 (765)
Q Consensus       639 ~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~~~~  716 (765)
                      +.=..-.+|+-.+..+...+...    .+..-.+-.+....+.+.  ++-+|-+...+|+...|..+|..+++..-..  
T Consensus       409 a~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~--  482 (546)
T KOG3783|consen  409 ASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKR--  482 (546)
T ss_pred             cchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--
Confidence            21113455665555444333222    111111112222233333  5678999999999999999999999763221  


Q ss_pred             CCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCC-HHHHHHHHHhh
Q 004249          717 IPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGA-VDLARQVLRDH  762 (765)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~-~~~A~~~l~k~  762 (765)
                                  ......-|-|.|-||.+|.+.|. ..+|+..|.|+
T Consensus       483 ------------~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kA  517 (546)
T KOG3783|consen  483 ------------TEDLWAVPFALYELALLYWDLGGGLKEARALLLKA  517 (546)
T ss_pred             ------------ccccccccHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence                        12234558899999999999988 99999999886

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.13  E-value=0.1  Score=40.67  Aligned_cols=66  Identities=14%  Similarity=0.173  Sum_probs=39.2

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcc
Q 004249          213 ADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNA  278 (765)
Q Consensus       213 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~  278 (765)
                      +..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++...-.+-..+..++...|.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            455666677777777777777777777777777777777777776665442233344444444443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.97  E-value=0.51  Score=49.48  Aligned_cols=181  Identities=12%  Similarity=0.101  Sum_probs=103.7

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHH------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCCHHHHHH
Q 004249          197 FHLASLYVELGNFQRAADVYRQM------VQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKG--HPTEADFGVIDL  268 (765)
Q Consensus       197 ~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~  268 (765)
                      ..++.++.-.|++.+|.+.|.+.      ++...+  --.+.++.-+...|..++-..+.++-.+-  +-..+.     .
T Consensus       636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----a  708 (1081)
T KOG1538|consen  636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK-----A  708 (1081)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----H
Confidence            34566666677777777776543      111110  11345556666666666655555543221  222222     4


Q ss_pred             HHHHHHHhccHHHHHHHHH------HHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHH
Q 004249          269 LASMLVQMNAYDRVLKHIE------LVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEI  342 (765)
Q Consensus       269 l~~~~~~~~~~~~A~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  342 (765)
                      -+.++...|+.++|+...-      -++.+...-+....+....++..+.....+.-|.+.|.++-.         ...+
T Consensus       709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksi  779 (1081)
T KOG1538|consen  709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSL  779 (1081)
T ss_pred             HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHH
Confidence            5677777888888776532      222221111233344455556666666777777777776521         1234


Q ss_pred             HHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249          343 ADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKA  398 (765)
Q Consensus       343 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  398 (765)
                      ..+....++|.+|..+-++.-+.     -+.+++..|+.+....++++|.+.|.++
T Consensus       780 VqlHve~~~W~eAFalAe~hPe~-----~~dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  780 VQLHVETQRWDEAFALAEKHPEF-----KDDVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             hhheeecccchHhHhhhhhCccc-----cccccchHHHHhhhhhhHHHHHHHHHHh
Confidence            46667888888888776653332     3456777788888888888887766543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.97  E-value=0.16  Score=43.84  Aligned_cols=81  Identities=17%  Similarity=0.108  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004249          162 WKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSG  241 (765)
Q Consensus       162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  241 (765)
                      +..+..+-...++.+++...+..+--+.|..++.-..-|.++...|++.+|+..|+.+....|..+.+.-.++.++...|
T Consensus        13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~   92 (160)
T PF09613_consen   13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG   92 (160)
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence            33344444555555555555555555556666655566666666666666666666655555555555555555555554


Q ss_pred             C
Q 004249          242 Q  242 (765)
Q Consensus       242 ~  242 (765)
                      +
T Consensus        93 D   93 (160)
T PF09613_consen   93 D   93 (160)
T ss_pred             C
Confidence            4

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.94  E-value=0.1  Score=41.56  Aligned_cols=90  Identities=13%  Similarity=0.168  Sum_probs=48.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHhCCCCHHHHHH
Q 004249          167 PWLIEQGDTTWAMSCLSEAVKADPNDF---KLKFHLASLYVELGN-----------FQRAADVYRQMVQLCPENIEALKM  232 (765)
Q Consensus       167 ~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~  232 (765)
                      .-++..|++-+|+++.+..+...+++.   ..+...|.++..+..           .-.++++|.++..+.|..+..++.
T Consensus         4 ~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~   83 (111)
T PF04781_consen    4 KDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFE   83 (111)
T ss_pred             HHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHH
Confidence            344455555555555555555444333   223333333332211           223566677777777777666666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc
Q 004249          233 GAKLYQKSGQIESSVDILEDYLKG  256 (765)
Q Consensus       233 la~~~~~~g~~~~A~~~~~~~~~~  256 (765)
                      +|.-+-....|+++....++++..
T Consensus        84 la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   84 LASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhcc
Confidence            666666666666666666666554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.87  E-value=0.021  Score=35.46  Aligned_cols=27  Identities=22%  Similarity=0.277  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          375 HLKIAECSLALKEREKSIIYFYKALQI  401 (765)
Q Consensus       375 ~~~la~~~~~~g~~~~A~~~~~~al~~  401 (765)
                      +..+|.+|...|++++|+.+|++++.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            566777777777777777777775443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.85  E-value=0.11  Score=40.47  Aligned_cols=64  Identities=13%  Similarity=0.038  Sum_probs=37.3

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHcCC
Q 004249          111 ISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD--SSLWKLIFPWLIEQGD  174 (765)
Q Consensus       111 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~g~  174 (765)
                      +..+++.+..+|++..+.+.+|..+...|++++|++.+..++..+++.  ..+...+-.++...|.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            445566666777777777777777777777777777777777666543  3444444444444444

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.83  E-value=4.4  Score=46.59  Aligned_cols=326  Identities=11%  Similarity=-0.105  Sum_probs=173.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHc----C---CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004249          132 GLVHDALGNTAKAMGCYWLAACYKQKDS---SLWKLIFPWLIEQ----G---DTTWAMSCLSEAVKADPNDFKLKFHLAS  201 (765)
Q Consensus       132 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la~  201 (765)
                      ..++...+.|+.|+..|++.....|...   ++.+..|.....+    |   .+.+|+.-|++... .|.-|--|...|.
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  560 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKAL  560 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHH
Confidence            4567788899999999999998888755   6677777776542    3   47788888877543 5677777899999


Q ss_pred             HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCCCHHHHHHH-------
Q 004249          202 LYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS-----GQIESSVDILEDYLKGHPTEADFGVIDLL-------  269 (765)
Q Consensus       202 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~p~~~~~~~~~~l-------  269 (765)
                      +|.+.|++++-+++|.-+++..|+.|..-...-.+.+++     .+-..|....--++...|......--..+       
T Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  640 (932)
T PRK13184        561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEILYHK  640 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHhh
Confidence            999999999999999999999998865433222222211     11233444444455555543321100000       


Q ss_pred             ----------------------HHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhh
Q 004249          270 ----------------------ASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAI  327 (765)
Q Consensus       270 ----------------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  327 (765)
                                            ..+-+-.|..---.+.++++...      .+..+....-.+....|.++-+......+
T Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  714 (932)
T PRK13184        641 QQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDL------RDYRALADIFYVACDLGNWEFFSQFSDIL  714 (932)
T ss_pred             ccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhc------ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence                                  00111222223333334444433      12244555555667888887766655544


Q ss_pred             ccc----CCCChH--------HHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHH-HHHHHHHHHHHhcc---HHHH
Q 004249          328 HWE----NVSDHA--------ESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGC-LHLKIAECSLALKE---REKS  391 (765)
Q Consensus       328 ~~~----~~~~~~--------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~---~~~A  391 (765)
                      -..    ..+.+.        ..+..-..++.....++++.+.+..   +  +|.... +....+.-....++   .-.+
T Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (932)
T PRK13184        715 AEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN---T--DPTLILYAFDLFAIQALLDEEGESIIQL  789 (932)
T ss_pred             HHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh---C--CHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            211    111111        1122222334445566666654432   2  222221 11111111112222   2222


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHH
Q 004249          392 IIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGF  471 (765)
Q Consensus       392 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A  471 (765)
                      ++.+.+..................|.-..++++|-+++..--...-..          ....++...|..+...+.-+-|
T Consensus       790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  859 (932)
T PRK13184        790 LQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLD----------EYSEAFVLYGCYLALTEDREAA  859 (932)
T ss_pred             HHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhcc----------ccchHHHHHHHHHHhcCchhHH
Confidence            222222211111112333446677777889999998884432211000          0135677778777777777777


Q ss_pred             HHhhHHHH
Q 004249          472 VDMLLPLV  479 (765)
Q Consensus       472 ~~~~~~~~  479 (765)
                      ...+....
T Consensus       860 ~~~~~~~~  867 (932)
T PRK13184        860 KAHFSGCR  867 (932)
T ss_pred             HHHHhhcc
Confidence            66665554

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.77  E-value=0.79  Score=36.85  Aligned_cols=96  Identities=21%  Similarity=0.153  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc------------hHHHHHHHHHHHcCCHHHHHHHHHHHhc------
Q 004249           92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELP------------NSYHILGLVHDALGNTAKAMGCYWLAAC------  153 (765)
Q Consensus        92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~------  153 (765)
                      ...+..|...+..|-|++|...++++......-|            -++-.|+.++..+|+|++++..-.+++.      
T Consensus        10 Y~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG   89 (144)
T PF12968_consen   10 YMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG   89 (144)
T ss_dssp             HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc
Confidence            3446778888888999999999998887653322            3456677777888888776665555543      


Q ss_pred             -cCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHh
Q 004249          154 -YKQKDSSLW----KLIFPWLIEQGDTTWAMSCLSEAVK  187 (765)
Q Consensus       154 -~~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~  187 (765)
                       ++.+....|    +..+..+...|+.++|+..|+.+.+
T Consensus        90 EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   90 ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             -TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence             333333333    3355556666666666666665543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PRK10941 hypothetical protein; Provisional

Probab=95.74  E-value=0.11  Score=50.10  Aligned_cols=65  Identities=14%  Similarity=0.194  Sum_probs=33.2

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249          198 HLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD  262 (765)
Q Consensus       198 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  262 (765)
                      ++-.++...++++.|+.+.+.++...|+++.-+...|.+|.++|.+..|..-++..++..|+++.
T Consensus       186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~  250 (269)
T PRK10941        186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI  250 (269)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence            34444445555555555555555555555554555555555555555555555555555555444

>smart00028 TPR Tetratricopeptide repeats

Probab=95.74  E-value=0.016  Score=34.74  Aligned_cols=31  Identities=45%  Similarity=0.675  Sum_probs=29.2

Q ss_pred             hHHHhHHHHHHHhchHHHHHHHHHHHHhhhh
Q 004249          682 EALYNIARAYHHVGLVSLAASYYEKVLAMYQ  712 (765)
Q Consensus       682 ~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~  712 (765)
                      .+++++|.++...|+++.|+..|+++++..|
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            5789999999999999999999999999877

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.73  E-value=0.56  Score=39.72  Aligned_cols=84  Identities=15%  Similarity=0.014  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 004249           93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQ  172 (765)
Q Consensus        93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  172 (765)
                      .++......+..++.+++..++..+--..|+.++.-..-|.++...|++.+|+..|+......+..+-..-.++.|+..+
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al   91 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK   91 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence            45555666777999999999999998999999999999999999999999999999999888777787777888888888


Q ss_pred             CCHH
Q 004249          173 GDTT  176 (765)
Q Consensus       173 g~~~  176 (765)
                      |+.+
T Consensus        92 ~Dp~   95 (153)
T TIGR02561        92 GDAE   95 (153)
T ss_pred             CChH
Confidence            8754

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.63  E-value=0.05  Score=37.08  Aligned_cols=34  Identities=18%  Similarity=0.055  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 004249          128 YHILGLVHDALGNTAKAMGCYWLAACYKQKDSSL  161 (765)
Q Consensus       128 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~  161 (765)
                      ++.+|..++++|+|++|..+.+.+++.+|++..+
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa   37 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA   37 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence            3444444444455555555554444444444443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.54  E-value=0.93  Score=47.68  Aligned_cols=185  Identities=12%  Similarity=0.038  Sum_probs=98.9

Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcc-cCCCChHHHHHHHHHHH
Q 004249          268 LLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHW-ENVSDHAESINEIADLF  346 (765)
Q Consensus       268 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~la~~~  346 (765)
                      .++.++.-.|++.+|.+.|.+.-.....-.-...--.+..+.-++..|..++-..+.++-.. ...-..|   ...+..+
T Consensus       637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP---kaAAEmL  713 (1081)
T KOG1538|consen  637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP---KAAAEML  713 (1081)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc---HHHHHHh
Confidence            67778888888888888876642220000000011123334444555555444444333100 0001111   1234666


Q ss_pred             HccccHHHHHHHHH------HHHhcc--CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004249          347 KNRELYSTALKYYH------MLEANA--GVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLE  418 (765)
Q Consensus       347 ~~~g~~~~A~~~~~------~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  418 (765)
                      ...|+.++|+.+.-      -+++++  .+...-+.+..++..+.....+.-|.+.|.++=.        ...+.+++..
T Consensus       714 iSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve  785 (1081)
T KOG1538|consen  714 ISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVE  785 (1081)
T ss_pred             hcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheee
Confidence            77777777776542      111111  0223334555556666666666666666665422        2335567778


Q ss_pred             cCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHH
Q 004249          419 DAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPL  478 (765)
Q Consensus       419 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  478 (765)
                      .+++++|..+.++.-+.-+               .+++-.|+.+....++++|.+.|.++
T Consensus       786 ~~~W~eAFalAe~hPe~~~---------------dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  786 TQRWDEAFALAEKHPEFKD---------------DVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             cccchHhHhhhhhCccccc---------------cccchHHHHhhhhhhHHHHHHHHHHh
Confidence            8899999888776655433               34667777777777788777666554

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.47  E-value=0.047  Score=51.43  Aligned_cols=69  Identities=19%  Similarity=0.248  Sum_probs=49.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004249          168 WLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKL  236 (765)
Q Consensus       168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  236 (765)
                      -....|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+++.+.|.+.+++.+.++.
T Consensus       125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            345667777777777777777777777777777777777777777777777777777777766655543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.36  E-value=0.099  Score=35.64  Aligned_cols=34  Identities=24%  Similarity=0.405  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 004249          196 KFHLASLYVELGNFQRAADVYRQMVQLCPENIEA  229 (765)
Q Consensus       196 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  229 (765)
                      ++.+|..+.+.|+|++|..+.+.+++..|++..+
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa   37 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA   37 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence            4444445555555555555555555555554443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.29  E-value=0.31  Score=43.90  Aligned_cols=104  Identities=16%  Similarity=0.136  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccH--HHH
Q 004249          228 EALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLL--ALK  304 (765)
Q Consensus       228 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~  304 (765)
                      .++..+|..|.+.|+.+.|++.|.++......... ...+..+..+.+..+++..+..++.++........+...  ...
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            45667777777777777777777776654322211 334556777777777777777777777666432221111  223


Q ss_pred             HHHHHHHHhcCChhHHHHHHHhhcccC
Q 004249          305 IKAGICHIQLGNTDKAEILLTAIHWEN  331 (765)
Q Consensus       305 ~~l~~~~~~~~~~~~A~~~~~~~~~~~  331 (765)
                      ..-|..++..++|.+|...|-.+....
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            344666677778888877777765433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK10941 hypothetical protein; Provisional

Probab=95.23  E-value=0.19  Score=48.45  Aligned_cols=78  Identities=8%  Similarity=-0.040  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004249          337 ESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLL  416 (765)
Q Consensus       337 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  416 (765)
                      ....++-.++...++++.|+.+.+.++.+  .|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+-.....+.
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            35566778889999999999999999999  9999999999999999999999999999999999999997766544443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=95.00  E-value=0.12  Score=52.68  Aligned_cols=109  Identities=14%  Similarity=-0.022  Sum_probs=82.9

Q ss_pred             CCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCCCHHH
Q 004249           85 KKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDAL---GNTAKAMGCYWLAACYKQKDSSL  161 (765)
Q Consensus        85 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~p~~~~~  161 (765)
                      .++++.+...+..|.-.+..+....|+..|.+++...|.....+...+.++++.   |+.-.|+.....+++++|....+
T Consensus       368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka  447 (758)
T KOG1310|consen  368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA  447 (758)
T ss_pred             hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence            456667777777777777788888888888888888888888887777777654   45556666677777888888888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 004249          162 WKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF  193 (765)
Q Consensus       162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  193 (765)
                      |+.|+.++..++++.+|+.+...+....|.+.
T Consensus       448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  448 HFRLARALNELTRYLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence            88888888888888888887777766666443

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=94.90  E-value=14  Score=45.99  Aligned_cols=307  Identities=14%  Similarity=0.030  Sum_probs=157.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249           99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWA  178 (765)
Q Consensus        99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A  178 (765)
                      .+|...++++.-...... ...+|    .....-......|++..|..+|+++++.+|+....+...-......|.+...
T Consensus      1428 ~lY~~i~dpDgV~Gv~~~-r~a~~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~ 1502 (2382)
T KOG0890|consen 1428 NLYGSIHDPDGVEGVSAR-RFADP----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTE 1502 (2382)
T ss_pred             HHHHhcCCcchhhhHHHH-hhcCc----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHH
Confidence            356667777766655543 11122    2233334455667777777777777777777666666666666666666666


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHH-HHHHhCCHHHHHHHHH--------------HHHHhCCCCHHHH-HHHHH-------
Q 004249          179 MSCLSEAVKADPNDFKLKFHLAS-LYVELGNFQRAADVYR--------------QMVQLCPENIEAL-KMGAK-------  235 (765)
Q Consensus       179 ~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~--------------~al~~~p~~~~~~-~~la~-------  235 (765)
                      +...+-.....++..+-+..++. +..+.++++.-.....              ..+.....+.-+. -.+..       
T Consensus      1503 i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~ 1582 (2382)
T KOG0890|consen 1503 ILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIE 1582 (2382)
T ss_pred             HhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhh
Confidence            66655555444444333333322 2244444444333322              0000001110000 00000       


Q ss_pred             ---HHHHcCCHHHHHHHHHHH------------H-hcCCCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Q 004249          236 ---LYQKSGQIESSVDILEDY------------L-KGHPTEAD---FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSG  296 (765)
Q Consensus       236 ---~~~~~g~~~~A~~~~~~~------------~-~~~p~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  296 (765)
                         .....|-+..+.++.-++            + ...+++..   ..-|.+....-....+..+-+-.+++..-....+
T Consensus      1583 ~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~ 1662 (2382)
T KOG0890|consen 1583 NLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMR 1662 (2382)
T ss_pred             hHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcc
Confidence               000011222222221111            1 11111111   0012122221111122344444455544332212


Q ss_pred             ---CCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCC---
Q 004249          297 ---KELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHN---  370 (765)
Q Consensus       297 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---  370 (765)
                         .....+.|...|.+....|.++.|...+-.+....   -+.+....|..+...|+...|+..+++.+... .|+   
T Consensus      1663 ~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~-~~~~~~ 1738 (2382)
T KOG0890|consen 1663 SNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN-FPDLHT 1738 (2382)
T ss_pred             ccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh-cccccC
Confidence               34556778888888888999999988887775433   46788888999999999999999999888552 222   


Q ss_pred             -------C------HHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 004249          371 -------D------GCLHLKIAECSLALKE--REKSIIYFYKALQILEDNIDARLTLAS  414 (765)
Q Consensus       371 -------~------~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~  414 (765)
                             .      ..+...++......|+  ..+-+..|+.+.+..|...+.++.+|.
T Consensus      1739 ~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~ 1797 (2382)
T KOG0890|consen 1739 PYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGK 1797 (2382)
T ss_pred             CccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHH
Confidence                   1      1233444455555555  345567888888888887777777773

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.83  E-value=0.99  Score=47.25  Aligned_cols=126  Identities=19%  Similarity=0.143  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHhhCCCchHHHH--HHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 004249          110 AISVLHEVIRLEEELPNSYHI--LGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSE-AV  186 (765)
Q Consensus       110 A~~~~~~~l~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-al  186 (765)
                      ++..+...+..+|.++..+..  +...+...+....+.-.+...+..+|.+..+...|+......|....+...+.. +.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            444444444555555544222  344555556665666666666666666666666666655555554444444433 55


Q ss_pred             hcCCCCHHHHHHH------HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 004249          187 KADPNDFKLKFHL------ASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAK  235 (765)
Q Consensus       187 ~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  235 (765)
                      ...|.+......+      +......|+..++...+.++....|.++.+...+..
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~  184 (620)
T COG3914         130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMT  184 (620)
T ss_pred             hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence            5555555443333      555555566666666666666666665544444333

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.81  E-value=1.9  Score=45.31  Aligned_cols=160  Identities=13%  Similarity=0.157  Sum_probs=100.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 004249           99 SLHYALGRYEEAISVLHEVIRLEEELP-NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTW  177 (765)
Q Consensus        99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~  177 (765)
                      ......|+++++....... ..-|.-+ .....++..+.++|.++.|+.+-        .++...+.|   ..+.|+++.
T Consensus       269 k~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~lg~L~~  336 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQLGNLDI  336 (443)
T ss_dssp             HHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHHCT-HHH
T ss_pred             HHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHhcCCHHH
Confidence            4567899999988777522 2223333 44566777888889888888663        455656555   468999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004249          178 AMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGH  257 (765)
Q Consensus       178 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  257 (765)
                      |.+..+     ..+++..|..||.....+|+++-|..+|+++-.        +..+..+|...|+.+.-.+....+....
T Consensus       337 A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~  403 (443)
T PF04053_consen  337 ALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERG  403 (443)
T ss_dssp             HHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            988654     345788999999999999999999999998732        4566777888888766555555544332


Q ss_pred             CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004249          258 PTEADFGVIDLLASMLVQMNAYDRVLKHIELVD  290 (765)
Q Consensus       258 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  290 (765)
                      .       ++..-.++...|+.++.++.+.+.-
T Consensus       404 ~-------~n~af~~~~~lgd~~~cv~lL~~~~  429 (443)
T PF04053_consen  404 D-------INIAFQAALLLGDVEECVDLLIETG  429 (443)
T ss_dssp             --------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred             C-------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence            1       2344445566677777777766543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00028 TPR Tetratricopeptide repeats

Probab=94.78  E-value=0.059  Score=32.11  Aligned_cols=30  Identities=23%  Similarity=0.144  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 004249          127 SYHILGLVHDALGNTAKAMGCYWLAACYKQ  156 (765)
Q Consensus       127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p  156 (765)
                      ++..+|.++...|++++|+..|.+++...|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344555555555555555555555554444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.73  E-value=1.2  Score=46.67  Aligned_cols=126  Identities=16%  Similarity=0.067  Sum_probs=59.3

Q ss_pred             HHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccH
Q 004249          273 LVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELY  352 (765)
Q Consensus       273 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  352 (765)
                      ....++++++........-.    +..+......++..+.+.|-++.|+.+         ..+++..+.|+   .+.|+.
T Consensus       271 av~~~d~~~v~~~i~~~~ll----~~i~~~~~~~i~~fL~~~G~~e~AL~~---------~~D~~~rFeLA---l~lg~L  334 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAASNLL----PNIPKDQGQSIARFLEKKGYPELALQF---------VTDPDHRFELA---LQLGNL  334 (443)
T ss_dssp             HHHTT-HHH-----HHHHTG----GG--HHHHHHHHHHHHHTT-HHHHHHH---------SS-HHHHHHHH---HHCT-H
T ss_pred             HHHcCChhhhhhhhhhhhhc----ccCChhHHHHHHHHHHHCCCHHHHHhh---------cCChHHHhHHH---HhcCCH
Confidence            33445666655555321111    122333445555566666666666653         22344444443   456666


Q ss_pred             HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhc
Q 004249          353 STALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLL  429 (765)
Q Consensus       353 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  429 (765)
                      +.|.+..+       ..+++..|..||......|+++-|..+|+++-.        +-.|..+|.-.|+.+.-.++.
T Consensus       335 ~~A~~~a~-------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~  396 (443)
T PF04053_consen  335 DIALEIAK-------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLA  396 (443)
T ss_dssp             HHHHHHCC-------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHH
T ss_pred             HHHHHHHH-------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHH
Confidence            66665442       334566777777777777777777777766432        233444444555544433333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=94.71  E-value=0.35  Score=55.41  Aligned_cols=165  Identities=13%  Similarity=0.137  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHH------HHHH-HHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------
Q 004249           89 PEIRRMLGDASLHYALGRYEEAIS------VLHE-VIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACY-------  154 (765)
Q Consensus        89 ~~~~~~~~~a~~~~~~g~~~~A~~------~~~~-~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-------  154 (765)
                      .+....+..+......|.+.+|.+      ++.. .-...|.....+..++.++...|++++|+..-.++.-+       
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence            455666777888888888888877      4442 22345677778888888888888888888877766433       


Q ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 004249          155 K-QKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA--------DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE  225 (765)
Q Consensus       155 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  225 (765)
                      + |+....+..++...+..++...|+..+.++...        .|.-.....+++.++...++++.|+.+++.++.....
T Consensus      1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~ 1089 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK 1089 (1236)
T ss_pred             CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence            2 344456666777777777777777777776654        2333444566666777777777777777777664311


Q ss_pred             --------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249          226 --------NIEALKMGAKLYQKSGQIESSVDILEDY  253 (765)
Q Consensus       226 --------~~~~~~~la~~~~~~g~~~~A~~~~~~~  253 (765)
                              ....+..++++....+++..|....+..
T Consensus      1090 v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1090 VLGPKELETALSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred             hcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence                    1233444555555555555555544443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=94.70  E-value=6.1  Score=40.81  Aligned_cols=89  Identities=9%  Similarity=0.036  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Q 004249          110 AISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGD-TTWAMSCLSEAVKA  188 (765)
Q Consensus       110 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~  188 (765)
                      -..+|+.++...+.++..|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.+++..
T Consensus        90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~  169 (568)
T KOG2396|consen   90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF  169 (568)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence            34567777777778888888887777777778888889999999999999999888887777666 88888899999999


Q ss_pred             CCCCHHHHHH
Q 004249          189 DPNDFKLKFH  198 (765)
Q Consensus       189 ~p~~~~~~~~  198 (765)
                      +|+++..|..
T Consensus       170 npdsp~Lw~e  179 (568)
T KOG2396|consen  170 NPDSPKLWKE  179 (568)
T ss_pred             CCCChHHHHH
Confidence            9988876643

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.55  E-value=0.42  Score=40.46  Aligned_cols=74  Identities=19%  Similarity=0.177  Sum_probs=41.3

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004249          169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ  242 (765)
Q Consensus       169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  242 (765)
                      -...++++++...+..+--+.|+.++.-..-|.++...|+|.+|+..|+...+..+..+...-.++.++...|+
T Consensus        20 aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        20 ALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             HHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            33455555555555555555566666655666666666666666666666555555545444444555444443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.44  E-value=2.1  Score=45.01  Aligned_cols=124  Identities=19%  Similarity=0.099  Sum_probs=99.2

Q ss_pred             CCHHHHHHHHHHHhccCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 004249          139 GNTAKAMGCYWLAACYKQKDSSLWKL--IFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVY  216 (765)
Q Consensus       139 g~~~~A~~~~~~a~~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  216 (765)
                      |...-++..+...+.++|.++..+..  +...+...+....+...+..++..+|.+..+..+++......|....+...+
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~  124 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI  124 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence            33344666777777788888877544  4666778888889999999999999999999999999988888777766666


Q ss_pred             HH-HHHhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249          217 RQ-MVQLCPENIEALKMG------AKLYQKSGQIESSVDILEDYLKGHPTEAD  262 (765)
Q Consensus       217 ~~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~  262 (765)
                      .. +....|.+......+      +.....+|+..++....+++....|.++.
T Consensus       125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~  177 (620)
T COG3914         125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR  177 (620)
T ss_pred             HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh
Confidence            55 788888887665555      88888899999999999999999998855

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.35  E-value=0.7  Score=43.02  Aligned_cols=67  Identities=18%  Similarity=0.176  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHccccH-------HHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc
Q 004249          336 AESINEIADLFKNRELY-------STALKYYHMLEANAGVHN----DGCLHLKIAECSLALKEREKSIIYFYKALQIL  402 (765)
Q Consensus       336 ~~~~~~la~~~~~~g~~-------~~A~~~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  402 (765)
                      +.++..+|++|...|+.       ..|+..|.++......|.    ...+.+.+|.+..+.|++++|..+|.+++...
T Consensus       118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            45666677777666663       345555555554432222    24677788888888888888888888888764

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.22  E-value=5.1  Score=37.95  Aligned_cols=299  Identities=11%  Similarity=0.003  Sum_probs=140.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhCC--------CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249           95 LGDASLHYALGRYEEAISVLHEVIRLEEE--------LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIF  166 (765)
Q Consensus        95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la  166 (765)
                      +..|+.....+++++|+..|.+++.....        ...+...++.+|...|++..-.+.....       .++|....
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~s-------re~m~~ft   79 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSS-------REAMEDFT   79 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhh-------HHHHHHhc
Confidence            56778888999999999999999876221        1246778888888888876544443322       22222111


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 004249          167 PWLIEQGDTTWAMSCLSEAVKADPNDFK---LKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQI  243 (765)
Q Consensus       167 ~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  243 (765)
                           .   ....+..+..++..|..++   -...+........+- +-...++.         ..-..++.++++.|+|
T Consensus        80 -----k---~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~r-Ekr~fLr~---------~Le~Kli~l~y~~~~Y  141 (421)
T COG5159          80 -----K---PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADR-EKRKFLRL---------ELECKLIYLLYKTGKY  141 (421)
T ss_pred             -----c---hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHhcccH
Confidence                 0   1122233333333332222   111111111111000 00111111         1223455666666666


Q ss_pred             HHHHHHHHHHHhc---CCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CC--CCccHHHHHHHHHHHHhcCC
Q 004249          244 ESSVDILEDYLKG---HPTEAD-FGVIDLLASMLVQMNAYDRVLKHIELVDLVYY-SG--KELLLALKIKAGICHIQLGN  316 (765)
Q Consensus       244 ~~A~~~~~~~~~~---~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~  316 (765)
                      .+|+......+..   ..+.+. ..++..-..+|....+..++...+..+..... .-  +......-..-|...+...+
T Consensus       142 sdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~d  221 (421)
T COG5159         142 SDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRD  221 (421)
T ss_pred             HHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeecccc
Confidence            6666665554321   111111 11344555566666666666555554433211 01  12223333444556666666


Q ss_pred             hhHHHHHHHhhcccCC--CChHHHHHHHHHHH---HccccHHHHHHHHH--HHHhccCCCCCHHHHHHHHHHHH--Hhcc
Q 004249          317 TDKAEILLTAIHWENV--SDHAESINEIADLF---KNRELYSTALKYYH--MLEANAGVHNDGCLHLKIAECSL--ALKE  387 (765)
Q Consensus       317 ~~~A~~~~~~~~~~~~--~~~~~~~~~la~~~---~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~~la~~~~--~~g~  387 (765)
                      |..|..+|-++++...  ..+..+...+-..+   ...+..++.-..++  ..++.- .....++....+..+.  .+.+
T Consensus       222 yktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y-~~r~I~am~avaea~~NRsL~d  300 (421)
T COG5159         222 YKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHY-DDRMIRAMLAVAEAFGNRSLKD  300 (421)
T ss_pred             chhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhh-hhhhHHHHHHHHHHhCCCcHhh
Confidence            7777666666554331  22233222222111   12223333333322  111110 3334556666666653  3456


Q ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 004249          388 REKSIIYFYKALQILEDNIDARLTLASLLLED  419 (765)
Q Consensus       388 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  419 (765)
                      +..|+..|..-+..+|--..-...+-..+...
T Consensus       301 f~~aL~qY~~el~~D~~iRsHl~~LYD~LLe~  332 (421)
T COG5159         301 FSDALAQYSDELHQDSFIRSHLQYLYDVLLEK  332 (421)
T ss_pred             HHHHHHHhhHHhccCHHHHHHHHHHHHHHHHh
Confidence            88888888887766554333333344444433

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.22  E-value=0.93  Score=36.44  Aligned_cols=108  Identities=13%  Similarity=0.046  Sum_probs=67.1

Q ss_pred             HcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccC--hhhHH
Q 004249          418 EDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFN--HEEHR  495 (765)
Q Consensus       418 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~--~~~~~  495 (765)
                      ..|-+++|...+.++++........+.-...-.+...+..++..+...|++++++.....++.-...-..+-.  -.-|.
T Consensus        21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI  100 (144)
T PF12968_consen   21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI  100 (144)
T ss_dssp             HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence            3466777776666665543322111111222335567778899999999999999888777742211001111  13467


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHhc
Q 004249          496 LLIIDLCKTLASLHRYEDAIKIINLILKLG  525 (765)
Q Consensus       496 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  525 (765)
                      .+.+..+..+...|+.++|+..|+.+-+..
T Consensus       101 aaVfsra~Al~~~Gr~~eA~~~fr~agEMi  130 (144)
T PF12968_consen  101 AAVFSRAVALEGLGRKEEALKEFRMAGEMI  130 (144)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence            788889999999999999999999887654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.18  E-value=0.076  Score=34.27  Aligned_cols=31  Identities=32%  Similarity=0.393  Sum_probs=27.3

Q ss_pred             hHHHhHHHHHHHhchHHHHHHHHHHHHhhhh
Q 004249          682 EALYNIARAYHHVGLVSLAASYYEKVLAMYQ  712 (765)
Q Consensus       682 ~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~  712 (765)
                      .++.|+|.+|...|++++|+.++++++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   33 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIRE   33 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence            4689999999999999999999999999875

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.05  E-value=1.4  Score=39.81  Aligned_cols=96  Identities=11%  Similarity=0.074  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH----HHHH
Q 004249          195 LKFHLASLYVELGNFQRAADVYRQMVQLCPEN---IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADF----GVID  267 (765)
Q Consensus       195 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----~~~~  267 (765)
                      ++..+|..|.+.|+.+.|++.|.++.......   .+.++.+..+....+++.....++.++-..-....++    +.-.
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            34455555555555555555555544432221   2334444455555555555555544443322211111    0111


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHH
Q 004249          268 LLASMLVQMNAYDRVLKHIELVD  290 (765)
Q Consensus       268 ~l~~~~~~~~~~~~A~~~~~~~~  290 (765)
                      .-|..+...++|.+|...|-.+.
T Consensus       118 ~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  118 YEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHhchHHHHHHHHHccC
Confidence            33444444555555555554443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.88  E-value=1.2  Score=36.82  Aligned_cols=74  Identities=19%  Similarity=0.030  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHccc---cHHHHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHH
Q 004249          337 ESINEIADLFKNRE---LYSTALKYYHMLEANAGVHN-DGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLT  411 (765)
Q Consensus       337 ~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  411 (765)
                      ...+++++++....   +..+.+.+++.+++.. .|. .-+..+.++..+.+.|+|+.++.+....++..|++.++...
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            34444555544332   3344555555555411 222 22344555555556666666666666666665555554443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.87  E-value=0.093  Score=47.45  Aligned_cols=57  Identities=19%  Similarity=0.231  Sum_probs=31.3

Q ss_pred             HHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 004249          102 YALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD  158 (765)
Q Consensus       102 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~  158 (765)
                      ...++.+.|.+.|.+++...|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus         6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            344555555555555555555555555555555555555555555555555555543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.72  E-value=4.4  Score=36.69  Aligned_cols=72  Identities=24%  Similarity=0.269  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHcCCHHHHH
Q 004249          353 STALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED----NIDARLTLASLLLEDAKDEEAI  426 (765)
Q Consensus       353 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~  426 (765)
                      ++|...|-++...+ .-++++..+.+|..|. ..+.++|+..+-+++++.+.    +++....|+.++...|+++.|.
T Consensus       123 ~~A~~~fL~~E~~~-~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTP-ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCC-CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            45555554444433 3345566666665555 44566666666666665432    3456666666666666666654

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.68  E-value=0.52  Score=49.47  Aligned_cols=95  Identities=13%  Similarity=0.133  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249           94 MLGDASLHYALGRYEEAISVLHEVIRLEEELP------NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP  167 (765)
Q Consensus        94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  167 (765)
                      +...|...++..+|..+++.|...+..-|.+.      .....++.||..+.+.+.|.+++..|-+.+|.++-....+..
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH


Q ss_pred             HHHHcCCHHHHHHHHHHHHhc
Q 004249          168 WLIEQGDTTWAMSCLSEAVKA  188 (765)
Q Consensus       168 ~~~~~g~~~~A~~~~~~al~~  188 (765)
                      +....|.-.+|+.+.......
T Consensus       437 ~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  437 SFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHhcchHHHHHHHHHHHhh

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.65  E-value=0.88  Score=42.39  Aligned_cols=28  Identities=7%  Similarity=-0.050  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          265 VIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       265 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                      .+..+|.+|...|+.+....++++++..
T Consensus       120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~  147 (214)
T PF09986_consen  120 LCLRLAWLYRDLGDEENEKRFLRKALEF  147 (214)
T ss_pred             HHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            4556666666666655555555555444

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.54  E-value=2.2  Score=35.43  Aligned_cols=73  Identities=18%  Similarity=0.164  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHh-cCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004249          159 SSLWKLIFPWLIEQGD---TTWAMSCLSEAVK-ADP-NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK  231 (765)
Q Consensus       159 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~-~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  231 (765)
                      ....++++.++....+   ..+.+.+++..++ ..| ..-+..+.++..+.+.++|+.++.+.+..++..|++..+..
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            3555666666665443   4456777777775 333 23466677777777777777777777777777777766543

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.52  E-value=0.59  Score=34.55  Aligned_cols=63  Identities=8%  Similarity=0.110  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHH---HHHHHHcCCHHHHHHHHHHHhc
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHIL---GLVHDALGNTAKAMGCYWLAAC  153 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l---~~~~~~~g~~~~A~~~~~~a~~  153 (765)
                      ....+.+|..++...+.++|+..++++++..++.++-+..+   ..+|...|+|.+++.+..+-+.
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567778888888888889988888888887776555444   4567778888887777655443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.25  E-value=0.15  Score=46.15  Aligned_cols=58  Identities=29%  Similarity=0.414  Sum_probs=38.5

Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 004249          169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN  226 (765)
Q Consensus       169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  226 (765)
                      ....++.+.|.+.|.+++..-|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            3455666666666666666666666666666666666666666666666666666655

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.19  E-value=9.5  Score=40.17  Aligned_cols=48  Identities=13%  Similarity=0.004  Sum_probs=28.0

Q ss_pred             cCCHHHHHHHHHHHHHhh------------CCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249          104 LGRYEEAISVLHEVIRLE------------EELPNSYHILGLVHDALGNTAKAMGCYWLA  151 (765)
Q Consensus       104 ~g~~~~A~~~~~~~l~~~------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  151 (765)
                      ..-|++|...|.-+....            |-+.+.+..++.+...+|+.+.|.....++
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~  310 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERG  310 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            455778888777776543            333355556666666666655555544444

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=93.18  E-value=9.1  Score=37.43  Aligned_cols=284  Identities=15%  Similarity=0.062  Sum_probs=158.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--hCCCc--------hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHH
Q 004249           94 MLGDASLHYALGRYEEAISVLHEVIRL--EEELP--------NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWK  163 (765)
Q Consensus        94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~  163 (765)
                      .+.++.......+.++++..+..++..  .|.+.        .....+|..+...|+..+-.......-       ..|.
T Consensus         7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~R-------pf~~   79 (411)
T KOG1463|consen    7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLR-------PFLS   79 (411)
T ss_pred             HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH-------HHHH
Confidence            366777788888889999999988874  22222        356677888888887776555554321       2222


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004249          164 LIFPWLIEQGDTTWAMSCLSEAVKADPN---DFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS  240 (765)
Q Consensus       164 ~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  240 (765)
                      ..+.        ..|.+..+..++..+.   ....-..+..-+...- ..+=..++++.         .-..++.+|...
T Consensus        80 ~v~K--------akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA-~~ekRtFLRq~---------Learli~Ly~d~  141 (411)
T KOG1463|consen   80 SVSK--------AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWA-KREKRTFLRQS---------LEARLIRLYNDT  141 (411)
T ss_pred             Hhhh--------HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHH-HHHhHHHHHHH---------HHHHHHHHHHhh
Confidence            2221        2233333333333221   1111111111111000 00111222222         234678889999


Q ss_pred             CCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC---CCccHHHHHHHHHHHHh
Q 004249          241 GQIESSVDILEDYLKG----HPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSG---KELLLALKIKAGICHIQ  313 (765)
Q Consensus       241 g~~~~A~~~~~~~~~~----~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~  313 (765)
                      ++|.+|+......++.    +....-..++..-..+|+...+..+|...+..+....+.-   +.....+-..-|..+..
T Consensus       142 ~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~  221 (411)
T KOG1463|consen  142 KRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAA  221 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeec
Confidence            9999998887776542    2222212244466778888888888888887766542210   11222333444667777


Q ss_pred             cCChhHHHHHHHhhcccCCC--ChHHHHHH---HHHHHHccccHHHHHHHHH--HHHhccCCCCCHHHHHHHHHHHHH--
Q 004249          314 LGNTDKAEILLTAIHWENVS--DHAESINE---IADLFKNRELYSTALKYYH--MLEANAGVHNDGCLHLKIAECSLA--  384 (765)
Q Consensus       314 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~~---la~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~~la~~~~~--  384 (765)
                      ..+|..|..+|-++.+....  ++..+...   +-.+-...+..++--.++.  .+++.  ...+..+....+.++..  
T Consensus       222 ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y--~g~~i~AmkavAeA~~nRS  299 (411)
T KOG1463|consen  222 EKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKY--AGRDIDAMKAVAEAFGNRS  299 (411)
T ss_pred             ccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhc--cCcchHHHHHHHHHhcCCc
Confidence            78999999998887654422  22333332   2223344555665555443  33443  45566788888887754  


Q ss_pred             hccHHHHHHHHHHHHHHcCC
Q 004249          385 LKEREKSIIYFYKALQILED  404 (765)
Q Consensus       385 ~g~~~~A~~~~~~al~~~p~  404 (765)
                      +.+++.|+..|+.-+..+|-
T Consensus       300 LkdF~~AL~~yk~eL~~D~i  319 (411)
T KOG1463|consen  300 LKDFEKALADYKKELAEDPI  319 (411)
T ss_pred             HHHHHHHHHHhHHHHhcChH
Confidence            46788888888887776554

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.05  E-value=0.18  Score=28.48  Aligned_cols=25  Identities=28%  Similarity=0.278  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHh
Q 004249          737 EAAYNLHLIYKKSGAVDLARQVLRD  761 (765)
Q Consensus       737 ea~~nl~~iy~~~g~~~~A~~~l~k  761 (765)
                      .+.++||.++...|+.++|+.++++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            5789999999999999999998863

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.97  E-value=14  Score=38.86  Aligned_cols=247  Identities=14%  Similarity=0.086  Sum_probs=136.6

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249          210 QRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELV  289 (765)
Q Consensus       210 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  289 (765)
                      ....+.+.......|+++......+.++...|+.+.|+..++..++..-.....-.++.++.++.-+.+|..|-..+...
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L  329 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL  329 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            44555666667788999888888899999999988888888877761111111224557888888889999999999988


Q ss_pred             HHHhcCCCCccHHHHHHHH-HHHHh--------cCChhHHHHHHHhh---cccCCCChHHHHHHHHHHHHccccHHHHHH
Q 004249          290 DLVYYSGKELLLALKIKAG-ICHIQ--------LGNTDKAEILLTAI---HWENVSDHAESINEIADLFKNRELYSTALK  357 (765)
Q Consensus       290 ~~~~~~~~~~~~~~~~~l~-~~~~~--------~~~~~~A~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  357 (765)
                      ...    ...+...+..++ .|++.        .|+.+.|..+++..   +...+.+.|.          ...-..+|.+
T Consensus       330 ~de----sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~----------E~f~~RKver  395 (546)
T KOG3783|consen  330 RDE----SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPL----------EKFIVRKVER  395 (546)
T ss_pred             Hhh----hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCch----------hHHHHHHHHH
Confidence            877    444444444444 33322        22333333333321   1110000000          0011112222


Q ss_pred             HHHHHHhccCCCCCHHH--HHHHHHHHHHhc--cHHHHHHHHHHHHHH----cCCCHH-HHHHHHHHHHHcCCHHHHHHh
Q 004249          358 YYHMLEANAGVHNDGCL--HLKIAECSLALK--EREKSIIYFYKALQI----LEDNID-ARLTLASLLLEDAKDEEAISL  428 (765)
Q Consensus       358 ~~~~~~~~~~~~~~~~~--~~~la~~~~~~g--~~~~A~~~~~~al~~----~p~~~~-~~~~l~~~~~~~g~~~~A~~~  428 (765)
                      +-.+.- .  .+..+.+  ++.++.++-...  ..++.. -++..++.    ++++.- -.+.+|.++..+|+...|..+
T Consensus       396 f~~~~~-~--~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~  471 (546)
T KOG3783|consen  396 FVKRGP-L--NASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKC  471 (546)
T ss_pred             Hhcccc-c--cccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            221110 0  1111111  233333332211  122222 12222221    222222 234489999999999999999


Q ss_pred             cCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcch-hHHHHHhhHHHH
Q 004249          429 LTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGM-IEGFVDMLLPLV  479 (765)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~  479 (765)
                      +....+....     .....|.-+.+++.+|.++...|. ..++...+.++-
T Consensus       472 f~i~~~~e~~-----~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr  518 (546)
T KOG3783|consen  472 FKIQVEKESK-----RTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAR  518 (546)
T ss_pred             HHHHHHHHHh-----hccccccccHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence            9877654221     123446667899999999999988 888888777775

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.85  E-value=0.12  Score=33.22  Aligned_cols=29  Identities=24%  Similarity=0.301  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhhcC
Q 004249          736 REAAYNLHLIYKKSGAVDLARQVLRDHCT  764 (765)
Q Consensus       736 ~ea~~nl~~iy~~~g~~~~A~~~l~k~l~  764 (765)
                      ..++.|||.+|...|++++|..++++.+.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            46789999999999999999999998864

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=92.68  E-value=1.7  Score=50.15  Aligned_cols=166  Identities=15%  Similarity=0.078  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHH------HHHH-HhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Q 004249          127 SYHILGLVHDALGNTAKAMG------CYWL-AACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA--------DPN  191 (765)
Q Consensus       127 ~~~~l~~~~~~~g~~~~A~~------~~~~-a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~  191 (765)
                      -....|......|.+.+|.+      .+.. .-.+.|.....+..++.++...|+.++|+..-.++.-+        .|+
T Consensus       934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen  934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred             hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence            34455666667777777776      5542 23346778888999999999999999999888777644        245


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----
Q 004249          192 DFKLKFHLASLYVELGNFQRAADVYRQMVQL--------CPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPT----  259 (765)
Q Consensus       192 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----  259 (765)
                      ....+..++...+..++...|+..+.++..+        .|.-.....+++.++...++++.|+.+.+.+......    
T Consensus      1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred             HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence            5567788888888888888888888888764        3444555677888888888999999999988875422    


Q ss_pred             -CCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          260 -EAD-FGVIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       260 -~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                       ... ...+..+++++...+++..|+...+....+
T Consensus      1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence             111 223445666666666666666655554444

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.64  E-value=0.14  Score=28.90  Aligned_cols=25  Identities=24%  Similarity=0.126  Sum_probs=22.4

Q ss_pred             chHHHhHHHHHHHhchHHHHHHHHH
Q 004249          681 QEALYNIARAYHHVGLVSLAASYYE  705 (765)
Q Consensus       681 ~~~~~~lg~~~~~~g~~~~A~~~y~  705 (765)
                      +.+++++|+++...|+.++|...++
T Consensus         1 ~~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    1 PRARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            3578999999999999999999876

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=92.54  E-value=0.99  Score=44.99  Aligned_cols=116  Identities=18%  Similarity=0.213  Sum_probs=59.4

Q ss_pred             CCcHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 004249           86 KVCPEIRRM----LGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSL  161 (765)
Q Consensus        86 ~~~~~~~~~----~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~  161 (765)
                      ...|.+..|    +..|...+++++|..|..-|..++....+-.        +..+ -.+..+...+.-+       ...
T Consensus       167 s~~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~--------a~~k-~~~~~~~di~~va-------SfI  230 (569)
T PF15015_consen  167 SFLPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGA--------ALSK-PFKASAEDISSVA-------SFI  230 (569)
T ss_pred             ccChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhh--------hccC-CCCCChhhHHHHH-------HHH
Confidence            344666655    4556777888888888888777776532110        0000 0000000000000       011


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004249          162 WKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR  217 (765)
Q Consensus       162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  217 (765)
                      -..+..||..+++.+-|+....+.+..+|..+.-+...|.++..+.+|.+|...+-
T Consensus       231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSam  286 (569)
T PF15015_consen  231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAM  286 (569)
T ss_pred             HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22355566666666666666666666666666666666666666666666555443

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=92.38  E-value=0.29  Score=46.43  Aligned_cols=76  Identities=12%  Similarity=0.183  Sum_probs=34.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 004249          155 KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFH-LASLYVELGNFQRAADVYRQMVQLCPENIEAL  230 (765)
Q Consensus       155 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  230 (765)
                      .|+++..|...+......|-+.+--..|.++++.+|.+++.|.. -+.-+...++++.+...|.++++.+|.++..|
T Consensus       103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw  179 (435)
T COG5191         103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW  179 (435)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence            34444444444444444444444444444444444444444433 22233344444444444444444444444433

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=92.12  E-value=0.58  Score=47.95  Aligned_cols=88  Identities=17%  Similarity=0.070  Sum_probs=62.3

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004249          174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL---GNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDIL  250 (765)
Q Consensus       174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  250 (765)
                      ....|+..|.+++...|.....+.+.+.++.+.   |+.-.|+.....+++++|....+++.|+.++...+++.+|+...
T Consensus       389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~  468 (758)
T KOG1310|consen  389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCH  468 (758)
T ss_pred             HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence            456677777777777777777777777766654   45556666666777777777777777777777777777777777


Q ss_pred             HHHHhcCCCCC
Q 004249          251 EDYLKGHPTEA  261 (765)
Q Consensus       251 ~~~~~~~p~~~  261 (765)
                      ..+....|.+.
T Consensus       469 ~alq~~~Ptd~  479 (758)
T KOG1310|consen  469 WALQMSFPTDV  479 (758)
T ss_pred             HHHhhcCchhh
Confidence            77666666543

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.06  E-value=15  Score=38.82  Aligned_cols=117  Identities=16%  Similarity=0.164  Sum_probs=76.3

Q ss_pred             cCCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----C-----------
Q 004249          172 QGDTTWAMSCLSEAVKA------------DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL-----C-----------  223 (765)
Q Consensus       172 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~-----------  223 (765)
                      ..-|++|...|.-++..            .|.+.+.+..++.++..+|+.+-|....++++=.     .           
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            34477888888777664            4666788999999999999998888877777532     1           


Q ss_pred             -----CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249          224 -----PENIE---ALKMGAKLYQKSGQIESSVDILEDYLKGHPT-EADFGVIDLLASMLVQMNAYDRVLKHIELV  289 (765)
Q Consensus       224 -----p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  289 (765)
                           |.|-.   +++.....+.+.|-+.-|.++++-+++++|. ++-. +.+.+-....+..+|+=-++.++..
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~-~l~~ID~~ALrareYqwiI~~~~~~  404 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLG-ILYLIDIYALRAREYQWIIELSNEP  404 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchh-HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence                 22222   2333445556778888899998888888888 5542 2223333334455555555555444

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=91.92  E-value=13  Score=36.09  Aligned_cols=25  Identities=16%  Similarity=0.057  Sum_probs=13.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHH
Q 004249          226 NIEALKMGAKLYQKSGQIESSVDIL  250 (765)
Q Consensus       226 ~~~~~~~la~~~~~~g~~~~A~~~~  250 (765)
                      ++..+..+|..+.+.|++.+|..+|
T Consensus        89 dp~LH~~~a~~~~~e~~~~~A~~Hf  113 (260)
T PF04190_consen   89 DPELHHLLAEKLWKEGNYYEAERHF  113 (260)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhccHHHHHHHH
Confidence            3555555666666555555555544

; PDB: 3LKU_E 2WPV_G.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.67  E-value=0.37  Score=30.11  Aligned_cols=32  Identities=16%  Similarity=0.113  Sum_probs=29.3

Q ss_pred             hHHHhHHHHHHHhchHHHHHHHHHHHHhhhhc
Q 004249          682 EALYNIARAYHHVGLVSLAASYYEKVLAMYQK  713 (765)
Q Consensus       682 ~~~~~lg~~~~~~g~~~~A~~~y~k~l~~~~~  713 (765)
                      +++..||.+-...+++++|+..|+++|++-.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~   33 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE   33 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999998653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=91.40  E-value=0.29  Score=31.83  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=22.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhc
Q 004249          739 AYNLHLIYKKSGAVDLARQVLRDHC  763 (765)
Q Consensus       739 ~~nl~~iy~~~g~~~~A~~~l~k~l  763 (765)
                      .++||.+|.+.|+.+.|+++|+..+
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHH
Confidence            4789999999999999999999875

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.40  E-value=2.4  Score=38.27  Aligned_cols=79  Identities=11%  Similarity=-0.005  Sum_probs=63.0

Q ss_pred             cCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHhccHHHH
Q 004249          314 LGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAG--VHNDGCLHLKIAECSLALKEREKS  391 (765)
Q Consensus       314 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A  391 (765)
                      ...-+.|...|-.+-....-++++..+.+|..|. ..+.++|+.++.+++++..  +.-+++++..|+.++...|+++.|
T Consensus       119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  119 RFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            3355778888888765555677899999999887 5688999999999998841  133689999999999999999988


Q ss_pred             HH
Q 004249          392 II  393 (765)
Q Consensus       392 ~~  393 (765)
                      --
T Consensus       198 Yi  199 (203)
T PF11207_consen  198 YI  199 (203)
T ss_pred             hh
Confidence            53

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=91.36  E-value=0.53  Score=44.81  Aligned_cols=82  Identities=16%  Similarity=0.113  Sum_probs=71.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249          181 CLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKM-GAKLYQKSGQIESSVDILEDYLKGHPT  259 (765)
Q Consensus       181 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~p~  259 (765)
                      .|.++....|+++..|...+......|.+.+--..|.++++.+|.+++.|.. -+.-+...++++.+...|.++++.+|+
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~  174 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR  174 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence            3445555578999999999998899999999999999999999999998876 556677889999999999999999999


Q ss_pred             CCC
Q 004249          260 EAD  262 (765)
Q Consensus       260 ~~~  262 (765)
                      ++.
T Consensus       175 ~p~  177 (435)
T COG5191         175 SPR  177 (435)
T ss_pred             Cch
Confidence            988

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=90.63  E-value=17  Score=35.28  Aligned_cols=49  Identities=10%  Similarity=0.105  Sum_probs=22.9

Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004249          171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQ  221 (765)
Q Consensus       171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  221 (765)
                      +..+..+-++....+++++|....++..++.--..  -..+|...++++++
T Consensus       196 RERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~--Ti~~AE~l~k~ALk  244 (556)
T KOG3807|consen  196 RERNPPARIKAAYQALEINNECATAYVLLAEEEAT--TIVDAERLFKQALK  244 (556)
T ss_pred             HhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhh--hHHHHHHHHHHHHH
Confidence            33344444455555555555555555554432221  23445555555544

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.54  E-value=2.9  Score=32.99  Aligned_cols=27  Identities=19%  Similarity=0.239  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          266 IDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       266 ~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                      +..++.+....|++++|+..+++++.+
T Consensus        44 ll~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen   44 LLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            345555555666666666666666555

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=90.23  E-value=3.2  Score=39.43  Aligned_cols=62  Identities=19%  Similarity=0.272  Sum_probs=35.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 004249          168 WLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA  229 (765)
Q Consensus       168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  229 (765)
                      .+...++++.|..+.++.+..+|.++.-+.-.|.+|.+.|.+.-|+..+...++..|+++.+
T Consensus       190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a  251 (269)
T COG2912         190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA  251 (269)
T ss_pred             HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence            34455555555555555555555555555555555555555555555555555555555443

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=90.22  E-value=22  Score=35.82  Aligned_cols=125  Identities=14%  Similarity=0.046  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHhhc-----ccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCC--CCHHH
Q 004249          302 ALKIKAGICHIQLGNTDKAEILLTAIH-----WENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVH--NDGCL  374 (765)
Q Consensus       302 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~  374 (765)
                      ..++.+..++...|+...-...+...+     ..+..........+-+.|...+.|+.|-....+..--....  ..+..
T Consensus       170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY  249 (493)
T KOG2581|consen  170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARY  249 (493)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHH
Confidence            345566666666777655555555433     22222334455666678888899999988877655211011  23456


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHcCCHHHHH
Q 004249          375 HLKIAECSLALKEREKSIIYFYKALQILEDNIDA------RLTLASLLLEDAKDEEAI  426 (765)
Q Consensus       375 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~l~~~~~~~g~~~~A~  426 (765)
                      ++.+|.+..-+++|..|.+++-.++...|.+...      ...+..+-.-+|.+.+-.
T Consensus       250 ~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers  307 (493)
T KOG2581|consen  250 LYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERS  307 (493)
T ss_pred             HHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchh
Confidence            7888999999999999999999999999975422      222333334456665543

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.21  E-value=0.53  Score=30.61  Aligned_cols=27  Identities=30%  Similarity=0.386  Sum_probs=25.1

Q ss_pred             HHhHHHHHHHhchHHHHHHHHHHHHhh
Q 004249          684 LYNIARAYHHVGLVSLAASYYEKVLAM  710 (765)
Q Consensus       684 ~~~lg~~~~~~g~~~~A~~~y~k~l~~  710 (765)
                      .+++|++|..+|+.+.|....+.++..
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            479999999999999999999999964

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=89.99  E-value=20  Score=34.92  Aligned_cols=148  Identities=16%  Similarity=0.135  Sum_probs=91.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q 004249          130 ILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNF  209 (765)
Q Consensus       130 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  209 (765)
                      .+-....+..+..+-++....+++++|....++..++.-  ...-..+|...++++++..    +..+...+.....|..
T Consensus       189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~----e~~yr~sqq~qh~~~~  262 (556)
T KOG3807|consen  189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAG----ETIYRQSQQCQHQSPQ  262 (556)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHH----HHHHhhHHHHhhhccc
Confidence            334444555667777778888888898888888877753  2334567888888887743    2222233333333333


Q ss_pred             HHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 004249          210 QRAADVYRQMVQLCPEN--IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIE  287 (765)
Q Consensus       210 ~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  287 (765)
                      .+|.      .+. ..+  ..+...++.+-.++|+..+|++.++...+..|-..-..+.-++...+....-|.+...++-
T Consensus       263 ~da~------~rR-Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa  335 (556)
T KOG3807|consen  263 HEAQ------LRR-DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA  335 (556)
T ss_pred             hhhh------hhc-ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3332      111 122  2344578888889999999999999888777754434455566777766666666555554


Q ss_pred             HHH
Q 004249          288 LVD  290 (765)
Q Consensus       288 ~~~  290 (765)
                      +.-
T Consensus       336 kYD  338 (556)
T KOG3807|consen  336 KYD  338 (556)
T ss_pred             hhc
Confidence            443

>PRK12798 chemotaxis protein; Reviewed

Probab=89.84  E-value=25  Score=35.89  Aligned_cols=231  Identities=9%  Similarity=-0.024  Sum_probs=130.0

Q ss_pred             HHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHH-HHHhc
Q 004249          308 GICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAEC-SLALK  386 (765)
Q Consensus       308 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g  386 (765)
                      +.+|...|--...++.+-   ..+...+.+.-..-|..-+-.|+-.+|.+.+..+.... .|.....+..|... .....
T Consensus        87 a~iy~lSGGnP~vlr~L~---~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~-l~~~lg~~laLv~a~l~~~~  162 (421)
T PRK12798         87 ALIYLLSGGNPATLRKLL---ARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEY-LPAELGAYLALVQGNLMVAT  162 (421)
T ss_pred             HHhhHhcCCCHHHHHHHH---HcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhh-cCchhhhHHHHHHHHHhccc
Confidence            444544444443333322   22333345555555556667888899988887654432 23333444444443 34456


Q ss_pred             cHHHHHHHHHHHHHHcCCCH--H-HHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHH
Q 004249          387 EREKSIIYFYKALQILEDNI--D-ARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYK  463 (765)
Q Consensus       387 ~~~~A~~~~~~al~~~p~~~--~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  463 (765)
                      ++.+|+..|..+--..|...  + +.-.-..+..+.|+.+++..+-.+-......+       ++-  ...+-..+....
T Consensus       163 dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S-------~YA--~~F~~~F~~~~~  233 (421)
T PRK12798        163 DPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHS-------PYA--SQFAQRFVDLVV  233 (421)
T ss_pred             CHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccC-------chH--HHHHHHHHHHHH
Confidence            78999999999988888765  3 33334445577888888766554444333222       110  111112222222


Q ss_pred             hcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhc
Q 004249          464 AKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQI  543 (765)
Q Consensus       464 ~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  543 (765)
                      ..++-. -...+..++...       ..+.-..+|+.++..-.-.|+.+-|.-.-++++.+......+......+.+. .
T Consensus       234 ~~~d~~-~~~~l~~~ls~~-------d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aa-a  304 (421)
T PRK12798        234 RLDDEI-RDARLVEILSFM-------DPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGA-A  304 (421)
T ss_pred             hccccc-cHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHH-H
Confidence            222111 112244444322       4455677899999999999999999999999999985533333333333333 4


Q ss_pred             ccccCChhhHHHHHHHH
Q 004249          544 PCNTTDPKLWFDGVRFM  560 (765)
Q Consensus       544 ~~~~g~~~~A~~~~~~~  560 (765)
                      ..-..+.+.|.+.+.++
T Consensus       305 ~v~s~~~~~al~~L~~I  321 (421)
T PRK12798        305 LVASDDAESALEELSQI  321 (421)
T ss_pred             ccCcccHHHHHHHHhcC
Confidence            55566677777766554

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=89.56  E-value=6.5  Score=37.99  Aligned_cols=64  Identities=22%  Similarity=0.246  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004249          159 SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL  222 (765)
Q Consensus       159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  222 (765)
                      ..++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|+++-+.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            3456667777777777777777777777777777777777777777777777777777776553

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.55  E-value=35  Score=37.99  Aligned_cols=249  Identities=11%  Similarity=0.057  Sum_probs=113.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhCCHH
Q 004249          133 LVHDALGNTAKAMGCYWLAACYKQKD-SSLWKLIFPWLIEQGDTTWAMSCLSEAVKA-DPNDFKLKFHLASLYVELGNFQ  210 (765)
Q Consensus       133 ~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~  210 (765)
                      .+..+..-|+-|+...+.- ..+++. ...+...|..++..|++++|...|-+.+.. +|...-      .-+.......
T Consensus       342 ~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi------~kfLdaq~Ik  414 (933)
T KOG2114|consen  342 DILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVI------KKFLDAQRIK  414 (933)
T ss_pred             HHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHH------HHhcCHHHHH
Confidence            3444555566666554432 222222 244555666677777777777777666653 221111      1112222233


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004249          211 RAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVD  290 (765)
Q Consensus       211 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  290 (765)
                      +-..+++...+..-.+.+--..|-.+|.++++.++-.+..++    .+......-.-..-.++.+.+-.++|.-+-.+.-
T Consensus       415 nLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~  490 (933)
T KOG2114|consen  415 NLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CDKGEWFFDVETALEILRKSNYLDEAELLATKFK  490 (933)
T ss_pred             HHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence            333444444444333333344556677777776654444332    2311110001122233333333444433332221


Q ss_pred             HHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCC
Q 004249          291 LVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHN  370 (765)
Q Consensus       291 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  370 (765)
                      .        ..   ..+-.++...+++++|++++..+   .++.-.......|..++.. ..++-...+-+.......+.
T Consensus       491 ~--------he---~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~~~~~  555 (933)
T KOG2114|consen  491 K--------HE---WVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILIELITELNSQG  555 (933)
T ss_pred             c--------CH---HHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhcCCCC
Confidence            1        01   12233456677888888888776   1122334555666666543 34444444444433211111


Q ss_pred             CHHHH----HHHHHHHHHhccHHHHHHHHHHHHHHcCCCHH
Q 004249          371 DGCLH----LKIAECSLALKEREKSIIYFYKALQILEDNID  407 (765)
Q Consensus       371 ~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  407 (765)
                      .....    ...-.+..-.+++..-..++....+..|+..+
T Consensus       556 ~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e  596 (933)
T KOG2114|consen  556 KGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE  596 (933)
T ss_pred             CCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence            11111    11222334456666666666667777666553

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=89.41  E-value=30  Score=36.13  Aligned_cols=209  Identities=10%  Similarity=-0.004  Sum_probs=116.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q 004249          132 GLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQR  211 (765)
Q Consensus       132 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  211 (765)
                      -.++...-...-....+.+++... .+..+++.++.+|... ..++-...+++.++.+-++...-..++..|.. ++.+.
T Consensus        73 ~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk  149 (711)
T COG1747          73 LTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSK  149 (711)
T ss_pred             HHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhh
Confidence            333333334444555566666654 5677888999999888 55777888999999888888888888888777 88999


Q ss_pred             HHHHHHHHHHhCCC---CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 004249          212 AADVYRQMVQLCPE---NI---EALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKH  285 (765)
Q Consensus       212 A~~~~~~al~~~p~---~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~  285 (765)
                      +..+|.+++...-.   +.   ++|..+-..  --.+.+.-.....+.-.........-++..+-.-|....++++|++.
T Consensus       150 ~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~I  227 (711)
T COG1747         150 AAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRI  227 (711)
T ss_pred             HHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHH
Confidence            99999998764321   11   222222111  12333333333333322222221111122222345556778888888


Q ss_pred             HHHHHHHhcCCCCccHHHHHHHHHHHHh-cCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHh
Q 004249          286 IELVDLVYYSGKELLLALKIKAGICHIQ-LGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEA  364 (765)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  364 (765)
                      +...++.    +..+..++-.+...+.. -..                ..+.+-|.....+-..-.++.+++.-|++.+.
T Consensus       228 lk~il~~----d~k~~~ar~~~i~~lRd~y~~----------------~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~  287 (711)
T COG1747         228 LKHILEH----DEKDVWARKEIIENLRDKYRG----------------HSQLEEYLKISNISQSGRNFFEALNDFEKLMH  287 (711)
T ss_pred             HHHHhhh----cchhhhHHHHHHHHHHHHhcc----------------chhHHHHHHhcchhhccccHHHHHHHHHHHhe
Confidence            8777777    44444444333322111 111                11222333333343344566777777777765


Q ss_pred             c
Q 004249          365 N  365 (765)
Q Consensus       365 ~  365 (765)
                      .
T Consensus       288 f  288 (711)
T COG1747         288 F  288 (711)
T ss_pred             e
Confidence            5

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=89.40  E-value=40  Score=37.55  Aligned_cols=119  Identities=8%  Similarity=0.007  Sum_probs=71.0

Q ss_pred             HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HhCCHHHHH
Q 004249          137 ALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV---ELGNFQRAA  213 (765)
Q Consensus       137 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~  213 (765)
                      ..|.-+.-+..++.-+.+++.+...+..|..++...|++++-...-..+..+.|..+..|.....-..   ..++-.++.
T Consensus        91 ~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~  170 (881)
T KOG0128|consen   91 NEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVE  170 (881)
T ss_pred             ccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHH
Confidence            34444555566666666666666677777777777777777666666666667777766655543332   235566666


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHhc
Q 004249          214 DVYRQMVQLCPENIEALKMGAKLYQKS-------GQIESSVDILEDYLKG  256 (765)
Q Consensus       214 ~~~~~al~~~p~~~~~~~~la~~~~~~-------g~~~~A~~~~~~~~~~  256 (765)
                      ..|++++. +-..+..|...+......       ++++....+|.+++..
T Consensus       171 ~~~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s  219 (881)
T KOG0128|consen  171 ELFEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS  219 (881)
T ss_pred             HHHHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence            77777764 234455565555555533       3345555566666553

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=89.14  E-value=3.1  Score=32.81  Aligned_cols=33  Identities=24%  Similarity=0.276  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 004249          229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA  261 (765)
Q Consensus       229 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  261 (765)
                      +...+|.++...|++++|+..+++++++.....
T Consensus        43 all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~   75 (94)
T PF12862_consen   43 ALLNLAELHRRFGHYEEALQALEEAIRLARENG   75 (94)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence            345555666666666666666666665544333

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.83  E-value=44  Score=37.30  Aligned_cols=26  Identities=8%  Similarity=0.115  Sum_probs=15.0

Q ss_pred             ccccCChhhHHHHHHHHHHhCCCchh
Q 004249          544 PCNTTDPKLWFDGVRFMVKLHPHRLT  569 (765)
Q Consensus       544 ~~~~g~~~~A~~~~~~~l~~~p~~~~  569 (765)
                      ..-.+++..-...+....+..|+++.
T Consensus       571 ~if~~~~~~~~~Fl~~~~E~s~~s~e  596 (933)
T KOG2114|consen  571 GIFSQNYQILLNFLESMSEISPDSEE  596 (933)
T ss_pred             eeeccCHHHHHHHHHHHHhcCCCchh
Confidence            34455666666666656666666543

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.65  E-value=0.97  Score=27.91  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=26.0

Q ss_pred             hHHHhHHHHHHHhchHHHHHHH--HHHHHhhhhc
Q 004249          682 EALYNIARAYHHVGLVSLAASY--YEKVLAMYQK  713 (765)
Q Consensus       682 ~~~~~lg~~~~~~g~~~~A~~~--y~k~l~~~~~  713 (765)
                      +..+.+|-.+++.|++++|+..  |.-+..++|+
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            5678899999999999999999  5577777663

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=88.51  E-value=43  Score=36.77  Aligned_cols=60  Identities=22%  Similarity=0.117  Sum_probs=35.3

Q ss_pred             HhhhcHHHHHHHHHHHHHhccC--CCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCch
Q 004249          506 ASLHRYEDAIKIINLILKLGYG--KFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRL  568 (765)
Q Consensus       506 ~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~  568 (765)
                      ...|+..+|.+++.-.+-....  +.-..-..+|.+|. ++...|.  ...+++.+.++...+.+
T Consensus       368 IH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGL-IhA~hG~--~~~~yL~~~Lk~~~~e~  429 (929)
T KOG2062|consen  368 IHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGL-IHANHGR--GITDYLLQQLKTAENEV  429 (929)
T ss_pred             eeccccchHHHHhhhhCCccCCCCCCccccchhhhhhc-cccCcCc--cHHHHHHHHHHhccchh
Confidence            4578888888888766643211  11112345666666 5544444  47888888887655443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=88.41  E-value=2.6  Score=40.66  Aligned_cols=59  Identities=14%  Similarity=0.183  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249          195 LKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDY  253 (765)
Q Consensus       195 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  253 (765)
                      ++..++..+...|+++.++..+++.+..+|.+...+..+...|...|+...|+..|+++
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l  213 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL  213 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            33444444444444444444555544444444444444444444445444444444444

>PRK12798 chemotaxis protein; Reviewed

Probab=88.26  E-value=33  Score=35.13  Aligned_cols=214  Identities=12%  Similarity=0.034  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q 004249          159 SSLWKLIFPWLIEQGDTTWAMSCLSEAVKA-DPNDFKLKFHLASL-YVELGNFQRAADVYRQMVQLCPENI---EALKMG  233 (765)
Q Consensus       159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l  233 (765)
                      .+.-..-|..-+-.|+..+|...+..+-.. .|...-.+..|... .....+...|+..|..+--..|...   .++..-
T Consensus       112 ~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRs  191 (421)
T PRK12798        112 FDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRS  191 (421)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHh
Confidence            344444455556677777777776554322 12223334433332 3345567777888777777777652   244444


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 004249          234 AKLYQKSGQIESSVDILEDYLKGHPTEADFG-VIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHI  312 (765)
Q Consensus       234 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  312 (765)
                      ..+....|+.+++..+-.+.+..+..++... .+..++......++-. -...+..++....  .+....+|..++..-.
T Consensus       192 i~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~~d--~~~q~~lYL~iAR~Al  268 (421)
T PRK12798        192 LFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI-RDARLVEILSFMD--PERQRELYLRIARAAL  268 (421)
T ss_pred             hHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc-cHHHHHHHHHhcC--chhHHHHHHHHHHHHH
Confidence            5555677777777777777777666655411 2223333444333211 1122444444422  3344566777777777


Q ss_pred             hcCChhHHHHHHHhhccc---CCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHH
Q 004249          313 QLGNTDKAEILLTAIHWE---NVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLH  375 (765)
Q Consensus       313 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  375 (765)
                      -.|+.+-|.-.-.+++..   ...+...+.+.-+-...-..++++|+..+..+-.....+.+...+
T Consensus       269 i~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~Ll  334 (421)
T PRK12798        269 IDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRALL  334 (421)
T ss_pred             HcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHHHH
Confidence            777777777666665432   223334455555555556666777777777655443345554433

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=88.02  E-value=7.9  Score=38.97  Aligned_cols=87  Identities=10%  Similarity=0.068  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCCCCHHHHHHHHHH
Q 004249          196 KFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYL---KGHPTEADFGVIDLLASM  272 (765)
Q Consensus       196 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~---~~~p~~~~~~~~~~l~~~  272 (765)
                      -..+..||...++.+-|+....+.+.++|....-+...|.++..+.+|.+|...+--+.   -+...+..  -...+..+
T Consensus       231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q--~~S~lIkl  308 (569)
T PF15015_consen  231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQ--RISKLIKL  308 (569)
T ss_pred             HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH--hHHHHHHH
Confidence            45688999999999999999999999999999989999999999999999887665443   23332222  22345555


Q ss_pred             HHHhccHHHHHHH
Q 004249          273 LVQMNAYDRVLKH  285 (765)
Q Consensus       273 ~~~~~~~~~A~~~  285 (765)
                      |.+. ..++|+..
T Consensus       309 yWqa-miEeAiTr  320 (569)
T PF15015_consen  309 YWQA-MIEEAITR  320 (569)
T ss_pred             HHHH-HHHHHHhc
Confidence            5443 45555543

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=87.97  E-value=2  Score=40.81  Aligned_cols=75  Identities=16%  Similarity=-0.119  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004249          128 YHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL  202 (765)
Q Consensus       128 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  202 (765)
                      ...+=..+...++++.|..+..+.+.++|.++.-+.-.|.+|.++|.+.-|+..++..+...|+++.+-......
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            344455777889999999999999999999999999999999999999999999999999999888765544443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=87.89  E-value=5.6  Score=29.61  Aligned_cols=60  Identities=12%  Similarity=0.127  Sum_probs=39.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          233 GAKLYQKSGQIESSVDILEDYLKGHPTEAD-FGVIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       233 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                      .|.-++..++.++|+..++++++..++.+. +.++-.+..+|...|++.+.+.+.-+=+.+
T Consensus        12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455677777888888888877666544 445556677777778887777765544433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=87.56  E-value=25  Score=35.69  Aligned_cols=167  Identities=12%  Similarity=0.122  Sum_probs=107.1

Q ss_pred             HHHHHHHHcCCHH-HHHHHHHHHHHhhCCCchHHHHHHHHHHH------------cCCHHHHHHHHHHHhccCCCCHHHH
Q 004249           96 GDASLHYALGRYE-EAISVLHEVIRLEEELPNSYHILGLVHDA------------LGNTAKAMGCYWLAACYKQKDSSLW  162 (765)
Q Consensus        96 ~~a~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~a~~~~p~~~~~~  162 (765)
                      ..-......|.|+ +++.+-.+.+..+|+...+|...-.++..            ..-.++-+.+...++..+|+.-.+|
T Consensus        33 s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW  112 (421)
T KOG0529|consen   33 SIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAW  112 (421)
T ss_pred             HHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHH
Confidence            3333344445554 56677777778888776665544333322            2235566677778888888888888


Q ss_pred             HHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004249          163 KLIFPWLIEQGD--TTWAMSCLSEAVKADPNDFKLKFHLASLYVEL----GNFQRAADVYRQMVQLCPENIEALKMGAKL  236 (765)
Q Consensus       163 ~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~  236 (765)
                      .....++.+.+.  +..=+.+.+++++.+|.+..+|...=.+....    ....+=+++..+++..++.|-.+|.....+
T Consensus       113 ~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~l  192 (421)
T KOG0529|consen  113 HHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLL  192 (421)
T ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHH
Confidence            888888876654  56778888888888888877765544443332    234566777888888888888887776666


Q ss_pred             HHH------cCC------HHHHHHHHHHHHhcCCCCCC
Q 004249          237 YQK------SGQ------IESSVDILEDYLKGHPTEAD  262 (765)
Q Consensus       237 ~~~------~g~------~~~A~~~~~~~~~~~p~~~~  262 (765)
                      +..      .|.      ...-+.....++-.+|++..
T Consensus       193 L~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS  230 (421)
T KOG0529|consen  193 LSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQS  230 (421)
T ss_pred             HHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccc
Confidence            552      231      22334444556666777766

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=86.70  E-value=1.4  Score=26.06  Aligned_cols=31  Identities=13%  Similarity=0.159  Sum_probs=26.0

Q ss_pred             CChhhHHHHHHHHHHhCCCchhhhHHHHHHH
Q 004249          548 TDPKLWFDGVRFMVKLHPHRLTTWNRYYKLV  578 (765)
Q Consensus       548 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~  578 (765)
                      |+.+.|...|++++...|.++..|..+....
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e   31 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEFE   31 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            5678899999999999999999998886643

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=86.64  E-value=2.8  Score=25.92  Aligned_cols=32  Identities=6%  Similarity=-0.063  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHhccHHHHHHH--HHHHHHHcCC
Q 004249          373 CLHLKIAECSLALKEREKSIIY--FYKALQILED  404 (765)
Q Consensus       373 ~~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~  404 (765)
                      +.++.+|-.+...|++++|+..  |+-+..++|.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            3455566666666666666666  3355544443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=85.92  E-value=60  Score=35.73  Aligned_cols=300  Identities=12%  Similarity=0.057  Sum_probs=160.0

Q ss_pred             HcCCHHHHHHHHHHHHHhh--CC----CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH-HHHHHHHHHcCCH
Q 004249          103 ALGRYEEAISVLHEVIRLE--EE----LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLW-KLIFPWLIEQGDT  175 (765)
Q Consensus       103 ~~g~~~~A~~~~~~~l~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~-~~la~~~~~~g~~  175 (765)
                      ..|+..+|.+++...+-.+  |.    ...+++.+|.++...|+-  ..+++...+....+....+ ..||.-+..+|--
T Consensus       369 H~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa  446 (929)
T KOG2062|consen  369 HRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA  446 (929)
T ss_pred             eccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcccc
Confidence            4688888888887766442  11    135788888888777764  7778777776554332221 1244444445543


Q ss_pred             HH-HHHHHHHHHhcCCCC--HHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004249          176 TW-AMSCLSEAVKADPND--FKLKFHLASLYVELGNFQRAAD-VYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILE  251 (765)
Q Consensus       176 ~~-A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  251 (765)
                      .+ -.+.++..+..+..-  ..+-+.+|.+....++. +|++ .+.-+.+..-+...--...|..+...|+-++|-.+.+
T Consensus       447 ~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~-eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~  525 (929)
T KOG2062|consen  447 NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQ-EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIK  525 (929)
T ss_pred             cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcH-HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHH
Confidence            22 222233333322211  12344555555544443 3333 3333322221222222345667777888889999998


Q ss_pred             HHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC
Q 004249          252 DYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN  331 (765)
Q Consensus       252 ~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  331 (765)
                      +++.-...-......+.++..|.-.|+...-..++.-++.-    ..++..-..-.+.-+.-..+++.......-+.+..
T Consensus       526 el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD----~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~  601 (929)
T KOG2062|consen  526 ELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD----VNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESY  601 (929)
T ss_pred             HHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc----cchHHHHHHHHHheeeEecChhhchHHHHHHhhhc
Confidence            88764311112234567888888888765544444433322    22222222223333344567777777666654433


Q ss_pred             CCChH--HHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCC---HHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHH
Q 004249          332 VSDHA--ESINEIADLFKNRELYSTALKYYHMLEANAGVHND---GCLHLKIAECSLALKE-----REKSIIYFYKALQI  401 (765)
Q Consensus       332 ~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~  401 (765)
                       ..+.  .+-..+|.++...|. .+|+.+++.+..   +|.+   ..++..+|.+..++.+     +..-++.|.+.+..
T Consensus       602 -N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~---D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~d  676 (929)
T KOG2062|consen  602 -NPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS---DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIND  676 (929)
T ss_pred             -ChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc---ChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhh
Confidence             2222  244556666666664 689999988775   3433   2466667777766654     45556666666654


Q ss_pred             cCCCHHHHHHHHHHH
Q 004249          402 LEDNIDARLTLASLL  416 (765)
Q Consensus       402 ~p~~~~~~~~l~~~~  416 (765)
                      ..  .+....+|-++
T Consensus       677 Kh--Ed~~aK~GAil  689 (929)
T KOG2062|consen  677 KH--EDGMAKFGAIL  689 (929)
T ss_pred             hh--hHHHHHHHHHH
Confidence            33  33444444443

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=85.84  E-value=13  Score=38.44  Aligned_cols=62  Identities=18%  Similarity=0.051  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCch--HHHHH--HHHHHHcCCHHHHHHHHHHHhcc
Q 004249           93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPN--SYHIL--GLVHDALGNTAKAMGCYWLAACY  154 (765)
Q Consensus        93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--~~~~~~~g~~~~A~~~~~~a~~~  154 (765)
                      ..+.++..++..++|..|..++..+...-|....  .+..+  |.-+...-++.+|.+.++..+..
T Consensus       133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4467889999999999999999999886344333  44444  44455778899999999988764

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.63  E-value=1.7  Score=27.20  Aligned_cols=29  Identities=31%  Similarity=0.238  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          373 CLHLKIAECSLALKEREKSIIYFYKALQI  401 (765)
Q Consensus       373 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  401 (765)
                      +++..||.+-...++|++|+..|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45677888888888888888888888775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF13041 PPR_2: PPR repeat family

Probab=84.71  E-value=4  Score=27.45  Aligned_cols=29  Identities=14%  Similarity=0.290  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHhcc
Q 004249          338 SINEIADLFKNRELYSTALKYYHMLEANA  366 (765)
Q Consensus       338 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~  366 (765)
                      .|..+...+.+.|++++|.++|+++.+.+
T Consensus         5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g   33 (50)
T PF13041_consen    5 TYNTLISGYCKAGKFEEALKLFKEMKKRG   33 (50)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence            34444444444444444444444444443

>PF13041 PPR_2: PPR repeat family

Probab=84.40  E-value=4.2  Score=27.31  Aligned_cols=42  Identities=10%  Similarity=0.018  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHH
Q 004249          303 LKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIAD  344 (765)
Q Consensus       303 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~  344 (765)
                      .+..+...+.+.|++++|.++|+++.+.....+...+..+..
T Consensus         5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~   46 (50)
T PF13041_consen    5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN   46 (50)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            344445555556666666666665554444444444444433

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=81.75  E-value=51  Score=31.69  Aligned_cols=104  Identities=17%  Similarity=0.089  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-CHHH---HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHH
Q 004249          227 IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA-DFGV---IDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLA  302 (765)
Q Consensus       227 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  302 (765)
                      .+++.++|..|.+.++.+.+.+++.+.++..-... ...+   -..+|.+|..+.-.++.++..+.+++. +.+-.....
T Consensus       115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk-GgDWeRrNR  193 (412)
T COG5187         115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK-GGDWERRNR  193 (412)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCCHHhhhh
Confidence            45566666666666666666666665554322111 0001   124455555444445555555555444 111111112


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhhcccC
Q 004249          303 LKIKAGICHIQLGNTDKAEILLTAIHWEN  331 (765)
Q Consensus       303 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  331 (765)
                      .....|.......++.+|-.++...+...
T Consensus       194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF  222 (412)
T COG5187         194 YKVYKGIFKMMRRNFKEAAILLSDILPTF  222 (412)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence            22334555555566666666666555433

>PF12854 PPR_1: PPR repeat

Probab=81.62  E-value=3  Score=25.34  Aligned_cols=28  Identities=21%  Similarity=0.261  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249           89 PEIRRMLGDASLHYALGRYEEAISVLHE  116 (765)
Q Consensus        89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~  116 (765)
                      |++..+-.....+.+.|+.++|.++|++
T Consensus         5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    5 PDVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            3333333333445555555555555543

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=81.35  E-value=9.8  Score=34.76  Aligned_cols=61  Identities=20%  Similarity=0.174  Sum_probs=50.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH
Q 004249           99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS  159 (765)
Q Consensus        99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~  159 (765)
                      ..+++.+...+|+...+.-++..|.+......+-..+.-.|++++|...++-+-.+.|+..
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            3467778888888888888888888888888888888888888888888888888887654

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=81.25  E-value=67  Score=32.76  Aligned_cols=144  Identities=7%  Similarity=-0.047  Sum_probs=103.5

Q ss_pred             ChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhh-hhHHHHHHHHHHHhcCCCCCchhhhhhh----hhhhhhHHHHH
Q 004249          549 DPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKI-FSKHAKLLRNVRAKYRDFVPPIIISGHQ----FTMISHHQDAA  623 (765)
Q Consensus       549 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~p~~~~~~~~~g~~----~~~~~~~~~A~  623 (765)
                      -.+.-+.+...+++.+|++-.+|+...+++.+.+.. +.....++.++++..|.+..++.-.-.+    ........+=+
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El  169 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL  169 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence            445567788899999999999999999999876665 6678889999999999988877433333    33333467778


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHHHhCcccCc---hhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHH
Q 004249          624 REYLEAYKLLPENPLINLCVGTALINLALGVRLQN---KHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHH  693 (765)
Q Consensus       624 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~  693 (765)
                      .+-.+++..++.|--+.-...+..-... .+...+   ....+...+.+...+.-..|+++.+++..=+....
T Consensus       170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~-~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~  241 (421)
T KOG0529|consen  170 EFTTKLINDNFSNYSAWHYRSLLLSTLH-PKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR  241 (421)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHHHhc-cccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence            8888999988888666555555444333 223333   24556677888888888899999998886555544

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=81.23  E-value=53  Score=31.59  Aligned_cols=59  Identities=20%  Similarity=0.236  Sum_probs=30.3

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHhcCCC--CccHHHHHHHHHHHHhcCChhHHHHHHH
Q 004249          267 DLLASMLVQMNAYDRVLKHIELVDLVYYSGK--ELLLALKIKAGICHIQLGNTDKAEILLT  325 (765)
Q Consensus       267 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~  325 (765)
                      ..+|..|+..|++++|+.+|+.+...+....  .....+...+..|....|+.+..+.+.-
T Consensus       182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l  242 (247)
T PF11817_consen  182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL  242 (247)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            3566666666666666666666654433211  1122334444555555555555444433

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=80.69  E-value=67  Score=33.83  Aligned_cols=24  Identities=13%  Similarity=0.116  Sum_probs=17.0

Q ss_pred             HHHHHHccccHHHHHHHHHHHHhc
Q 004249          342 IADLFKNRELYSTALKYYHMLEAN  365 (765)
Q Consensus       342 la~~~~~~g~~~~A~~~~~~~~~~  365 (765)
                      -|.-|...|+...|+.+|..+...
T Consensus       376 Ag~~~~~~~~~~~a~rcy~~a~~v  399 (414)
T PF12739_consen  376 AGHRYSKAGQKKHALRCYKQALQV  399 (414)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH
Confidence            346677777777777777777654

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.64  E-value=1.1e+02  Score=35.13  Aligned_cols=55  Identities=15%  Similarity=-0.026  Sum_probs=36.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhCCCch-----HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 004249           98 ASLHYALGRYEEAISVLHEVIRLEEELPN-----SYHILGLVHDALGNTAKAMGCYWLAA  152 (765)
Q Consensus        98 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~a~  152 (765)
                      -..+++...|++|+.+.+-....+|....     .....|..++.+|++++|...|.+..
T Consensus       314 i~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~  373 (877)
T KOG2063|consen  314 IQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE  373 (877)
T ss_pred             HHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            34566777799999888766554443321     11112566888999999999998763

>PF12854 PPR_1: PPR repeat

Probab=80.34  E-value=4.2  Score=24.67  Aligned_cols=21  Identities=14%  Similarity=0.376  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHH
Q 004249          230 LKMGAKLYQKSGQIESSVDIL  250 (765)
Q Consensus       230 ~~~la~~~~~~g~~~~A~~~~  250 (765)
                      |..+...|.+.|+.++|.++|
T Consensus        10 y~~lI~~~Ck~G~~~~A~~l~   30 (34)
T PF12854_consen   10 YNTLIDGYCKAGRVDEAFELF   30 (34)
T ss_pred             HHHHHHHHHHCCCHHHHHHHH
Confidence            333333333333333333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	765
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		5e-06
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		6e-05
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		6e-05
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		2e-04

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 159 SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQ 218
           +  WK +     +QGD   A+    +A++ DPN+    ++L + Y + G++Q+A + Y++
Sbjct: 9   AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 219 MVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLK 255
            ++L P N +A       Y K G  + ++   EDY K
Sbjct: 69  ALELDPNNAKAWYRRGNAYYKQGDYQKAI---EDYQK 102

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 48/91 (52%)
Query: 172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK 231
           QGD   A+    +A++ DPN+ +  ++L + Y + G++  A + Y++ ++L P N EA  
Sbjct: 22  QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY 81
Query: 232 MGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262
                Y K G  + +++  +  L+  P  A+
Sbjct: 82  NLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Query: 95  LGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACY 154
           LG+A  +Y  G Y+EAI    + + L+     +++ LG  +   G+  +A+  Y  A   
Sbjct: 7   LGNA--YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 64
Query: 155 KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAAD 214
             + +  W  +     +QGD   A+    +A++ DP   +  ++L + Y + G++  A +
Sbjct: 65  DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124
Query: 215 VYRQMVQLCP 224
            Y++ ++L P
Sbjct: 125 YYQKALELDP 134

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 48/91 (52%)
Query: 172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK 231
           QGD   A+    +A++  PN+ +  ++L + Y + G++  A + Y++ ++L P N EA  
Sbjct: 22  QGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWY 81
Query: 232 MGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262
                Y K G  + +++  +  L+ +P  A+
Sbjct: 82  NLGNAYYKQGDYDEAIEYYQKALELYPNNAE 112

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	765
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-15
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-14
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-14
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-14
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	8e-14
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-14
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-13
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	9e-12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	8e-09
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	9e-12
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-11
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	9e-08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	7e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-11
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-11
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-11
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	7e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-11
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	6e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	7e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-10
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-09
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	8e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	8e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	8e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	2e-06
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	1e-04
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	3e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	6e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-04
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	6e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	7e-05
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	1e-04
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	1e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-04
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	8e-04

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 91.1 bits (227), Expect = 1e-19
 Identities = 64/344 (18%), Positives = 124/344 (36%), Gaps = 37/344 (10%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           +S+H+   R + +       I+    L  +Y  LG V+   G   +A+  Y  A   K  
Sbjct: 40  SSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
               +  +   L+  GD   A+     A++ +P+ + ++  L +L   LG  + A   Y 
Sbjct: 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159

Query: 218 QMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMN 277
           + ++  P    A      ++   G+I  ++   E  +   P   D      L ++L +  
Sbjct: 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD--AYINLGNVLKEAR 217

Query: 278 AYDRVLKHIELVDLVYYSGKELLLALKIKA---------GICHIQLGNTDKAEILLT-AI 327
            +DR +                  AL +              + + G  D A      AI
Sbjct: 218 IFDRAVAAYLR-------------ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264

Query: 328 HWENVSDHAESINEIADLFKNRELYSTALKYYHM-LEAN---AGVHNDGCLHLKIAECSL 383
             +      ++   +A+  K +   + A   Y+  L      A   N       +A    
Sbjct: 265 ELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN------NLANIKR 316

Query: 384 ALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAIS 427
                E+++  + KAL++  +   A   LAS+L +  K +EA+ 
Sbjct: 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 78.7 bits (195), Expect = 1e-15
 Identities = 55/344 (15%), Positives = 107/344 (31%), Gaps = 71/344 (20%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           A   Y  G +E A     ++ R E +      +L  +H       ++             
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFS--------- 56

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
                                    + A+K +P   +   +L ++Y E G  Q A + YR
Sbjct: 57  -------------------------TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91

Query: 218 QMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMN 277
             ++L P+ I+     A     +G +E +V      L+ +P      V   L ++L  + 
Sbjct: 92  HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC--VRSDLGNLLKALG 149

Query: 278 AYDRVLKHIELVDLVYYSGKELLLALKIKA---------GICHIQLGNTDKAEILLT-AI 327
             +                     A++ +          G      G    A      A+
Sbjct: 150 RLEEAKACYL-------------KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196

Query: 328 HWENVSDHAESINEIADLFKNRELYSTALKYYHM-LEAN---AGVHNDGCLHLKIAECSL 383
                 +  ++   + ++ K   ++  A+  Y   L  +   A VH        +A    
Sbjct: 197 --TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG------NLACVYY 248

Query: 384 ALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAIS 427
                + +I  + +A+++     DA   LA+ L E     EA  
Sbjct: 249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED 292

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 67.6 bits (166), Expect = 4e-12
 Identities = 35/168 (20%), Positives = 71/168 (42%), Gaps = 2/168 (1%)

Query: 95  LGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACY 154
           LG+         ++ A++     + L       +  L  V+   G    A+  Y  A   
Sbjct: 209 LGNV--LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266

Query: 155 KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAAD 214
           +      +  +   L E+G    A  C + A++  P       +LA++  E GN + A  
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326

Query: 215 VYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262
           +YR+ +++ PE   A    A + Q+ G+++ ++   ++ ++  PT AD
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 66.4 bits (163), Expect = 9e-12
 Identities = 31/144 (21%), Positives = 57/144 (39%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           A ++Y  G  + AI      I L+   P++Y  L       G+ A+A  CY  A      
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
            +     +     EQG+   A+    +A++  P       +LAS+  + G  Q A   Y+
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363

Query: 218 QMVQLCPENIEALKMGAKLYQKSG 241
           + +++ P   +A        ++  
Sbjct: 364 EAIRISPTFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 55.2 bits (134), Expect = 4e-08
 Identities = 39/240 (16%), Positives = 86/240 (35%), Gaps = 31/240 (12%)

Query: 199 LASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHP 258
           LA    + G+F+ A     Q+ +  P+N   L + + ++ +  +++ S       +K +P
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64

Query: 259 TEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKA---------GI 309
             A+      L ++  +       ++H                AL++K            
Sbjct: 65  LLAE--AYSNLGNVYKERGQLQEAIEHYR-------------HALRLKPDFIDGYINLAA 109

Query: 310 CHIQLGNTDKAEILLT-AIHWENVSDHAESINEIADLFKNRELYSTALKYY-HMLEANAG 367
             +  G+ + A      A+ +    D     +++ +L K       A   Y   +E    
Sbjct: 110 ALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167

Query: 368 VHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAIS 427
                     +     A  E   +I +F KA+ +  + +DA + L ++L E    + A++
Sbjct: 168 FAV---AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 224

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.2 bits (126), Expect = 4e-07
 Identities = 21/111 (18%), Positives = 42/111 (37%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           A+     G   EA    +  +RL     +S + L  +    GN  +A+  Y  A     +
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN 208
            ++    +   L +QG    A+    EA++  P       ++ +   E+ +
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.6 bits (109), Expect = 4e-05
 Identities = 18/124 (14%), Positives = 47/124 (37%), Gaps = 5/124 (4%)

Query: 305 IKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHM-LE 363
           ++      Q G+ + AE     + W    D+   +  ++ +         +  +  + ++
Sbjct: 3   MELAHREYQAGDFEAAERHCMQL-WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 364 ANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDE 423
            N         +  +        + +++I ++  AL++  D ID  + LA+ L+     E
Sbjct: 62  QNP---LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118

Query: 424 EAIS 427
            A+ 
Sbjct: 119 GAVQ 122

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 88.6 bits (220), Expect = 1e-18
 Identities = 53/338 (15%), Positives = 121/338 (35%), Gaps = 32/338 (9%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           A++  A+G+ + A+  L +VI+L+ +   +    G +    G   +A   +         
Sbjct: 67  ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126

Query: 158 DSSLWKLI---------------FPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL 202
           ++   +                        GD T A++ L + ++    D +L+   A  
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186

Query: 203 YVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262
           +++ G  ++A    +   +L  +N EA    + LY + G  E S+  + + LK       
Sbjct: 187 FIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 246

Query: 263 ----FGVIDLLASMLVQMNAYDRVLKHIELVDL------VYYSGKELLLALKIKAGICHI 312
               +  +  L  ++       R  ++ +             S  E  +  K +   C  
Sbjct: 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFS 306

Query: 313 QLGNTDKA-EILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHM-LEANAGVHN 370
           +     +A  +    +  +   D+  ++ + A+ +   E+Y  A++ Y    E N    N
Sbjct: 307 KDEKPVEAIRVCSEVL--QMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN---EN 361

Query: 371 DGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDA 408
           D  +   + +    LK+ +K   Y    ++      + 
Sbjct: 362 DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI 399

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 85.9 bits (213), Expect = 8e-18
 Identities = 52/342 (15%), Positives = 119/342 (34%), Gaps = 44/342 (12%)

Query: 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSS 160
             A G+  +A+S  H  +  + +   +Y+    V  A+G +  A+         K   ++
Sbjct: 36  LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA 95

Query: 161 LWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL---------------YVE 205
                   L++QG    A     + +K++P++ + K   + L                  
Sbjct: 96  ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG 155

Query: 206 LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGV 265
            G++  A     +++++C  + E  ++ A+ + K G+   ++  L+   K      +   
Sbjct: 156 SGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE--A 213

Query: 266 IDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLT 325
              ++++  Q+  ++  L  +              L L      C        K   L+ 
Sbjct: 214 FYKISTLYYQLGDHELSLSEVREC-----------LKLDQDHKRCFAHYKQVKKLNKLIE 262

Query: 326 -AIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLA 384
            A        + ++             Y + +K     E +   +       +I  C   
Sbjct: 263 SAEELIRDGRYTDAT----------SKYESVMK----TEPSIAEYTVR-SKERICHCFSK 307

Query: 385 LKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAI 426
            ++  ++I    + LQ+  DN++A    A   L +   +EAI
Sbjct: 308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI 349

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 53/359 (14%), Positives = 110/359 (30%), Gaps = 63/359 (17%)

Query: 125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSE 184
            + +H  G+         ++M        + +    L           G    A+S    
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMADV---EKHLELGKKLLA--------AGQLADALSQFHA 51

Query: 185 AVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE 244
           AV  DP+++   +  A++++ +G  + A     +++QL  +   A      L  K G+++
Sbjct: 52  AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLD 111

Query: 245 SSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALK 304
            + D  +  LK +P+E +            Q+   D + +                    
Sbjct: 112 EAEDDFKKVLKSNPSENEE------KEAQSQLIKSDEMQRLRSQ---------------- 149

Query: 305 IKAGICHIQLGNTDKAEILLT-AIHWENVSDHAESINEIADLFKNRELYSTALKYY-HML 362
               +     G+   A   L   +  E     AE     A+ F        A+       
Sbjct: 150 ---ALNAFGSGDYTAAIAFLDKIL--EVCVWDAELRELRAECFIKEGEPRKAISDLKAAS 204

Query: 363 EANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDAR------------L 410
           +      ++     KI+     L + E S+    + L++ +D+                +
Sbjct: 205 KLKN---DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 261

Query: 411 TLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIE 469
             A  L+ D +  +A S     M  E               +R K ++C  +       
Sbjct: 262 ESAEELIRDGRYTDATSKYESVMKTEPSIAE--------YTVRSKERICHCFSKDEKPV 312

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 22/150 (14%), Positives = 49/150 (32%), Gaps = 4/150 (2%)

Query: 86  KVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELP----NSYHILGLVHDALGNT 141
           K   ++ +++  A      GRY +A S    V++ E  +      S   +          
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311

Query: 142 AKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLAS 201
            +A+         +  + +  K      + +     A+     A + + ND +++  L  
Sbjct: 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371

Query: 202 LYVELGNFQRAADVYRQMVQLCPENIEALK 231
               L   Q+        V+   +  E +K
Sbjct: 372 AQRLLKQSQKRDYYKILGVKRNAKKQEIIK 401

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 51/392 (13%), Positives = 113/392 (28%), Gaps = 53/392 (13%)

Query: 328 HWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKE 387
           ++++++D  E   E+          + AL  +H   A  G  ++   + + A   LA+ +
Sbjct: 19  YFQSMAD-VEKHLELGKKLLAAGQLADALSQFH--AAVDGDPDNYIAYYRRATVFLAMGK 75

Query: 388 REKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHA 447
            + ++    K +Q+  D   ARL    LLL+  K +EA       +          +  +
Sbjct: 76  SKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQS 135

Query: 448 WWLNIRIK---IKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKT 504
             +                  G     +  L  ++       E               + 
Sbjct: 136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL---------RAEC 186

Query: 505 LASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFD--GVRFMVK 562
                    AI  +    KL                        + + ++    + + + 
Sbjct: 187 FIKEGEPRKAISDLKAASKL---------------------KNDNTEAFYKISTLYYQLG 225

Query: 563 LHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDA 622
            H   L+      KL    ++ F+ + ++ +  +               +      + DA
Sbjct: 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES---------AEELIRDGRYTDA 276

Query: 623 AREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQE 682
             +Y    K  P      +    +   +        K     + +      L++  ++  
Sbjct: 277 TSKYESVMKTEPSIAEYTV---RSKERICHCFSKDEKPV---EAIRVCSEVLQMEPDNVN 330

Query: 683 ALYNIARAYHHVGLVSLAASYYEKVLAMYQKD 714
           AL + A AY    +   A   YE      + D
Sbjct: 331 ALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 51/341 (14%), Positives = 106/341 (31%), Gaps = 52/341 (15%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCY--------- 148
           A++  A+G+ + A+  L +VI L+ +   +    G +    G   +A   +         
Sbjct: 44  ATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 103

Query: 149 ------WLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL 202
                   +   K  +    +       +  D T A++ L + ++    D +L+   A  
Sbjct: 104 EQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC 163

Query: 203 YVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262
           +++ G  ++A    +   +L  +N EA    + LY + G  E S+               
Sbjct: 164 FIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSL--------------- 208

Query: 263 FGVIDLLASMLVQMNAYDRVLKHI-ELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAE 321
                         +     LK   +      +  +   L   I++    I+ G    A 
Sbjct: 209 --------------SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 254

Query: 322 ILLT---AIHWENVSDHAESINEIADLFKNRELYSTALKYYHM-LEANAGVHNDGCLHLK 377
                              S   I   F   E    A++     L+      ++      
Sbjct: 255 SKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP---DNVNALKD 311

Query: 378 IAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLE 418
            AE  L  +  +++I  +  A +  E++   R  L      
Sbjct: 312 RAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 82.3 bits (204), Expect = 6e-17
 Identities = 52/353 (14%), Positives = 122/353 (34%), Gaps = 66/353 (18%)

Query: 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSS 160
             A G+  +A+S  H  +  + +   +Y+    V  A+G +  A+         K   ++
Sbjct: 13  LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTA 72

Query: 161 LW----KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL-------------- 202
                  L    L++QG    A     + +K++P++ + K   + L              
Sbjct: 73  ARLQRGHL----LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQAL 128

Query: 203 -YVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA 261
              +  ++  A     +++++C  + E  ++ A+ + K G+   ++  L+   K      
Sbjct: 129 DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT 188

Query: 262 DFGVIDLLASMLVQMNAYDRVLKH----IEL----VDLVYYSGKELLLALKIKAGICHIQ 313
           +      ++++  Q+  ++  L      ++L         +  +   L   I++    I+
Sbjct: 189 E--AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 246

Query: 314 LGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGC 373
            G    A                               Y + +K     E +   +    
Sbjct: 247 DGRYTDAT----------------------------SKYESVMK----TEPSVAEYTVR- 273

Query: 374 LHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAI 426
              +I  C    ++  ++I    + LQ+  DN++A    A   L +   +EAI
Sbjct: 274 SKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI 326

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 58.4 bits (142), Expect = 3e-09
 Identities = 30/189 (15%), Positives = 66/189 (34%), Gaps = 16/189 (8%)

Query: 90  EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYW 149
           E++R+   A   +    Y  AI+ L +++ +         +        G   KA+    
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 178

Query: 150 LAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHL---------- 199
            A+  K  ++  +  I     + GD   ++S + E +K D +  +   H           
Sbjct: 179 AASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238

Query: 200 --ASLYVELGNFQRAADVYRQMVQLCPENIE----ALKMGAKLYQKSGQIESSVDILEDY 253
             A   +  G +  A   Y  +++  P   E    + +     + K  +   ++ I  + 
Sbjct: 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEV 298

Query: 254 LKGHPTEAD 262
           L+  P   +
Sbjct: 299 LQMEPDNVN 307

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 30/144 (20%)

Query: 86  KVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAM 145
           K   ++ +++  A      GRY +A S    V++ E   P+         + + +     
Sbjct: 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICHC---- 281

Query: 146 GCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE 205
                                    +      A+   SE ++ +P++       A  Y+ 
Sbjct: 282 -----------------------FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318

Query: 206 LGNFQRAADVYRQMVQLCPENIEA 229
              +  A   Y    +    + + 
Sbjct: 319 EEMYDEAIQDYEAAQEHNENDQQI 342

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 53/359 (14%), Positives = 105/359 (29%), Gaps = 80/359 (22%)

Query: 188 ADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSV 247
           AD         L    +  G    A   +   V   P+N  A    A ++   G+ +++ 
Sbjct: 1   ADVEKHL---ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA- 56

Query: 248 DILEDYLKGHPTEADFGVIDL----------LASMLVQMNAYDRVLKHIELVDLVYYSGK 297
             L D  K         VI L             +L++    D      + V        
Sbjct: 57  --LPDLTK---------VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV-------- 97

Query: 298 ELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALK 357
              L                 KA+               + +   A    +   Y+ A+ 
Sbjct: 98  ---LKSNPSEQEEKEAESQLVKAD-------------EMQRLRSQALDAFDGADYTAAIT 141

Query: 358 YY-HMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLL 416
           +   +LE       D  L    AEC +   E  K+I     A ++  DN +A   +++L 
Sbjct: 142 FLDKILEVCV---WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY 198

Query: 417 LEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLL 476
            +    E ++S +        + +  D+ H        ++K                   
Sbjct: 199 YQLGDHELSLSEV-------RECLKLDQDHKRCFAHYKQVKKLNKLIESAEE-------- 243

Query: 477 PLVCESSHQE--ETF---------NHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKL 524
            L+ +  + +    +           E        +C   +   +  +AI+I + +L++
Sbjct: 244 -LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 48/395 (12%), Positives = 107/395 (27%), Gaps = 74/395 (18%)

Query: 336 AESINEIADLFKNRELYSTALKYYHM-LEANAGVHNDGCLHLKIAECSLALKEREKSIIY 394
            E   E+          + AL  +H  ++ +    ++   + + A   LA+ + + ++  
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDP---DNYIAYYRRATVFLAMGKSKAALPD 59

Query: 395 FYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNI-- 452
             K + +  D   ARL    LLL+  K +EA       +          +  +  +    
Sbjct: 60  LTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE 119

Query: 453 -RIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRY 511
            +                  +  L  ++       E               +        
Sbjct: 120 MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL---------RAECFIKEGEP 170

Query: 512 EDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTW 571
             AI  +    KL                      + + + ++                 
Sbjct: 171 RKAISDLKAASKL---------------------KSDNTEAFY----------------- 192

Query: 572 NR---YYKL------VSRFEK---IFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHH 619
                YY+L      +S   +   +   H +   + +   +  +  +I S  +      +
Sbjct: 193 KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK--LNKLIESAEELIRDGRY 250

Query: 620 QDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAEN 679
            DA  +Y    K  P      +    +   +        K     + +      L++  +
Sbjct: 251 TDATSKYESVMKTEPSVAEYTV---RSKERICHCFSKDEKPV---EAIRICSEVLQMEPD 304

Query: 680 SQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKD 714
           +  AL + A AY    +   A   YE      + D
Sbjct: 305 NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND 339

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 84.4 bits (209), Expect = 3e-17
 Identities = 52/264 (19%), Positives = 102/264 (38%), Gaps = 13/264 (4%)

Query: 103 ALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLW 162
           A   +EE +   +E  +L+E+L  S    G+      +   A      A     + +S  
Sbjct: 215 AARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYI 274

Query: 163 KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL 222
            +    + ++ D+T   +   +A+K D N+  + +H   +   L N+ +A   + +  +L
Sbjct: 275 YMALI-MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL 333

Query: 223 CPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRV 282
            PENI      A L  +  + +    +  +  +  P   +  V +  A +L   N +D+ 
Sbjct: 334 DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE--VPNFFAEILTDKNDFDKA 391

Query: 283 LKH----IEL--VDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLT-AIHWENVSDH 335
           LK     IEL       Y G   L+  K      +  + N  +A  LL  A   +     
Sbjct: 392 LKQYDLAIELENKLDGIYVGIAPLVG-KATLLTRNPTVENFIEATNLLEKAS--KLDPRS 448

Query: 336 AESINEIADLFKNRELYSTALKYY 359
            ++   +A +   +E    A+  +
Sbjct: 449 EQAKIGLAQMKLQQEDIDEAITLF 472

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 72.5 bits (178), Expect = 2e-13
 Identities = 22/156 (14%), Positives = 56/156 (35%), Gaps = 1/156 (0%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           A +        E  +   + ++L+    + Y+  G ++  L N  +A   +  A     +
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
           +   +  +      +       +  SEA +  P   ++    A +  +  +F +A   Y 
Sbjct: 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYD 396

Query: 218 QMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDY 253
             ++L  +        A L  K+  +  +   +E++
Sbjct: 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPT-VENF 431

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 24/174 (13%), Positives = 60/174 (34%), Gaps = 9/174 (5%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
             +++ L  Y++A     +   L+ E    Y  L  +             +  A     +
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE---------LGN 208
              +       L ++ D   A+     A++ +     +   +A L  +         + N
Sbjct: 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430

Query: 209 FQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262
           F  A ++  +  +L P + +A    A++  +   I+ ++ + E+      T  +
Sbjct: 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 9/142 (6%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           A L Y   ++++  ++  E  R   E P   +    +     +  KA+  Y LA   + K
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404

Query: 158 DSSLW---------KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN 208
              ++           +        +   A + L +A K DP   + K  LA + ++  +
Sbjct: 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED 464

Query: 209 FQRAADVYRQMVQLCPENIEAL 230
              A  ++ +   L     E L
Sbjct: 465 IDEAITLFEESADLARTMEEKL 486

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 44/349 (12%), Positives = 108/349 (30%), Gaps = 63/349 (18%)

Query: 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVH------------DALGNTAKAMGCY 148
            + + + E   +   E    ++EL N    L                 A     + +   
Sbjct: 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226

Query: 149 WLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN 208
                 K+K +   +    +   + D   A   + +A++  P       ++A +  +  +
Sbjct: 227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY-IYMALIMADRND 285

Query: 209 FQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDL 268
                + + + ++L   N        ++       +               +A       
Sbjct: 286 STEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD---------------QA------- 323

Query: 269 LASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLT-AI 327
                     +D+  + ++  ++  Y                  +    D  E L + A 
Sbjct: 324 -------GKDFDKAKE-LDPENIFPYIQL----------ACLAYRENKFDDCETLFSEAK 365

Query: 328 HWENVSDHAESINEIADLFKNRELYSTALKYYH-MLE---ANAGVH-NDGCLHLK--IAE 380
                 +  E  N  A++  ++  +  ALK Y   +E      G++     L  K  +  
Sbjct: 366 --RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT 423

Query: 381 CSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLL 429
            +  ++   ++     KA ++   +  A++ LA + L+    +EAI+L 
Sbjct: 424 RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.5 bits (152), Expect = 3e-10
 Identities = 42/335 (12%), Positives = 115/335 (34%), Gaps = 20/335 (5%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           ++ + ++G  ++ + +  + + L+ +           ++ LG  A AM    + +     
Sbjct: 46  SACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF 105

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
           + +  +     ++E+     AMS L E              L++   +    ++      
Sbjct: 106 NDASIEP----MLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161

Query: 218 QMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMN 277
             +          K            E+  +++      +    +        S      
Sbjct: 162 TSMA---SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPE-SYDKADESFTKAAR 217

Query: 278 AYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLT-AIHWENVSDHA 336
            ++  L      + +    ++L ++L+   GI      +   A   +  AI    +    
Sbjct: 218 LFEEQLDKNNEDEKLK---EKLAISLEHT-GIFKFLKNDPLGAHEDIKKAI---ELFPRV 270

Query: 337 ESINEIADLFKNRELYSTALKYYHM-LEANAGVHNDGCLHLKIAECSLALKEREKSIIYF 395
            S   +A +  +R   +    Y+   L+ ++   N+  ++    + +  L+  +++   F
Sbjct: 271 NSYIYMALIMADRNDSTEYYNYFDKALKLDS---NNSSVYYHRGQMNFILQNYDQAGKDF 327

Query: 396 YKALQILEDNIDARLTLASLLLEDAKDEEAISLLT 430
            KA ++  +NI   + LA L   + K ++  +L +
Sbjct: 328 DKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 28/266 (10%), Positives = 74/266 (27%), Gaps = 24/266 (9%)

Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228
                    A+   + A++   +      +L++ YV +G+ ++  ++  + ++L P+  +
Sbjct: 16  FFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSK 74

Query: 229 ALKMGAKLYQKSGQIESSVDILEDY----LKGHPTEADFGVIDLLASMLVQMNAYDRVLK 284
            L   A   +  G+   +   + D     L G   +A    +         M+      +
Sbjct: 75  VLLRRASANEGLGKFADA---MFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLK---E 128

Query: 285 HIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIAD 344
               +D    +  EL      +       L +             E            A+
Sbjct: 129 KFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE---------LTFAN 179

Query: 345 LFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED 404
             ++ E     +       +N    +           + A +  E+ +    +  ++ E 
Sbjct: 180 YDESNEADKELMNGL----SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235

Query: 405 NIDARLTLASLLLEDAKDEEAISLLT 430
              +                A   + 
Sbjct: 236 LAISLEHTGIFKFLKNDPLGAHEDIK 261

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 84.4 bits (209), Expect = 4e-17
 Identities = 51/278 (18%), Positives = 92/278 (33%), Gaps = 18/278 (6%)

Query: 95  LGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACY 154
           + +  L  +   Y   +S       L E    +    G+ H    N   A      +   
Sbjct: 213 VANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272

Query: 155 KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAAD 214
               +S   L    L ++ ++        +AV  +P      +H   +Y  L +++ A +
Sbjct: 273 HPTPNSYIFLAL-TLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331

Query: 215 VYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLV 274
            +++   L PEN+      A L  K G+   S     +     PT  +  V    A +L 
Sbjct: 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE--VPTFFAEILT 389

Query: 275 QMNAYDRVLKH----IEL--------VDLVYYSGKELLLALKIKAGICHIQLGNTDKAEI 322
               +D  +K       L        V +    GK  +LA +       +     + A  
Sbjct: 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449

Query: 323 LLT-AIHWENVSDHAESINEIADLFKNRELYSTALKYY 359
           LLT A   E      ++   +A L    E    A++ +
Sbjct: 450 LLTKAC--ELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 72.8 bits (179), Expect = 1e-13
 Identities = 29/177 (16%), Positives = 60/177 (33%), Gaps = 18/177 (10%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLA------ 151
           A L Y  G++ E+ +  +E       LP        +    G+   A+  Y +A      
Sbjct: 351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410

Query: 152 ----------ACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLAS 201
                        K    +      P  +++     A+  L++A + DP   + K  LA 
Sbjct: 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQ 470

Query: 202 LYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHP 258
           L +++     A +++     L     E L+  A  + ++ +I+  +           
Sbjct: 471 LKLQMEKIDEAIELFEDSAILARTMDEKLQ--ATTFAEAAKIQKRLRADPIISAKME 525

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 34/337 (10%), Positives = 80/337 (23%), Gaps = 50/337 (14%)

Query: 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSS 160
            +    + EAI      I L+   P  Y  +   + + G+  K +               
Sbjct: 35  FFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFT------------ 82

Query: 161 LWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMV 220
                                 ++A++  P+  K     AS    LGNF  A      + 
Sbjct: 83  ----------------------TKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLS 120

Query: 221 QLCPENIEALKMGAKLYQKSGQIESSVDILE-DYLKGHPTEADFGVIDLLASMLVQMNAY 279
                +  +++   +       ++   + L  D  +G         +     +       
Sbjct: 121 LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180

Query: 280 DRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKA-EILLTAIHWENVS----- 333
             V                L            +      K+ ++  + +    V      
Sbjct: 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRE 240

Query: 334 DHAESINEIADLFKNRELYSTALKYYHM---LEANAGVHNDGCLHLKIAECSLALKEREK 390
           + A ++         +     A         L      +        +A      +  ++
Sbjct: 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYI------FLALTLADKENSQE 294

Query: 391 SIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAIS 427
              +F KA+ +  +          +       + A  
Sbjct: 295 FFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 66.7 bits (163), Expect = 2e-11
 Identities = 50/332 (15%), Positives = 118/332 (35%), Gaps = 34/332 (10%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           ++ + + G  E+ I    + + ++ +   +       +++LGN   AM    + +     
Sbjct: 66  SACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDF 125

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
           D +  +     ++E+     AM  L+E +  D          + +     +      ++ 
Sbjct: 126 DGASIEP----MLERNLNKQAMKVLNENLSKDEGR------GSQVLPSNTSLASFFGIFD 175

Query: 218 QMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMN 277
             +++                 S   +++  +L D L+   +  D G +     +    +
Sbjct: 176 SHLEVSS------------VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223

Query: 278 AYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLT-AIHWENVSDHA 336
            Y  +L    + D +  +    L       GI H    N   A++LL  +I   N+    
Sbjct: 224 MYHSLLSANTVDDPLRENAALALCYT----GIFHFLKNNLLDAQVLLQESI---NLHPTP 276

Query: 337 ESINEIADLFKNRELYSTALKYYHM-LEANAGVHNDGCLHLKIAECSLALKEREKSIIYF 395
            S   +A    ++E      K++   ++ N         +    +    L++ + +   F
Sbjct: 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNP---EYPPTYYHRGQMYFILQDYKNAKEDF 333

Query: 396 YKALQILEDNIDARLTLASLLLEDAKDEEAIS 427
            KA  +  +N+   + LA LL +  K  E+ +
Sbjct: 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEA 365

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 35/330 (10%), Positives = 96/330 (29%), Gaps = 40/330 (12%)

Query: 105 GRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKL 164
           G +      + ++  L      +Y    +     GN       +                
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAY---AVQLKNRGNHFFTAKNF---------------- 41

Query: 165 IFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCP 224
                  +     A+     A++ DPN+     ++++ Y+  G+ ++  +   + +++ P
Sbjct: 42  ------NE-----AIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP 90

Query: 225 ENIEALKMGAKLYQKSGQIE------SSVDILEDYLKGHPTEADFGVIDLLASMLVQMNA 278
           ++ +AL   A   +  G         S + +  D+            ++  A  ++  N 
Sbjct: 91  DHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENL 150

Query: 279 YDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKA-EILLTAIHWENVSDHAE 337
                +  +++           +              N D A  +L  A+     +    
Sbjct: 151 SKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEG 210

Query: 338 SINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYK 397
            +     L K+ ++Y + L        +    N                    + +   +
Sbjct: 211 YLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268

Query: 398 ALQILEDNIDARLTLASLLLEDAKDEEAIS 427
           ++ +     ++ + LA  L +    +E   
Sbjct: 269 SINL-HPTPNSYIFLALTLADKENSQEFFK 297

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 82.6 bits (203), Expect = 3e-16
 Identities = 92/673 (13%), Positives = 181/673 (26%), Gaps = 227/673 (33%)

Query: 42  QDNDDERRRFEAIIFGFGSRKRSREA--------SKKYPSLKKRGR-----PEGSKKKVC 88
             +          +F     K+               Y  L    +     P    +   
Sbjct: 57  SKDAVSGTLR---LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 89  PEIRRMLGDASLH--YALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMG 146
            +  R+  D  +   Y + R  +    L +   L E  P    +   +    G     + 
Sbjct: 114 EQRDRLYNDNQVFAKYNVSR-LQPYLKLRQA--LLELRPAKNVL---ID---G-----VL 159

Query: 147 CYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL 206
                   K            W+           CLS  V+    DFK+ F     ++ L
Sbjct: 160 -----GSGKT-----------WVA-------LDVCLSYKVQ-CKMDFKI-F-----WLNL 189

Query: 207 GNFQRAADVYRQMVQLC-----------------PENIEALKMGAKLYQKSGQIESSVDI 249
            N      V   + +L                     I +++   +   KS   E+ + +
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 250 LED--------YLKGH----PTEADFGVIDLLASML---VQMNAYDRVLKHIELVDLVYY 294
           L +                  T     V D L++     + ++ +   L   E+  L   
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL--- 306

Query: 295 SGKELLLALKIKAG-----ICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNR 349
               LL  L  +       +                +I  E++ D   + +    +  + 
Sbjct: 307 ----LLKYLDCRPQDLPREVLTTNP--------RRLSIIAESIRDGLATWDNWKHVNCD- 353

Query: 350 ELYSTALKYYHMLEANAGVHNDGCL-HLKIAECSLALKEREKSIIYFYKALQILEDNIDA 408
                  K   ++E+         L  L+ AE     ++        +  L +   +   
Sbjct: 354 -------KLTTIIES--------SLNVLEPAE----YRKM-------FDRLSVFPPSAHI 387

Query: 409 RLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMI 468
              L SL+  D    + + ++     L    +         +  + K     I       
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVN---KLHKYSL---------VEKQPKESTISIP------ 429

Query: 469 EGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGK 528
                + L L  +  ++        HR ++            Y       N+        
Sbjct: 430 ----SIYLELKVKLENEYAL-----HRSIV----------DHY-------NIPKTFDSDD 463

Query: 529 FPVEKEELYF---LGAQI-PCNTTD-----PKLWFDGVRFM-VKLHPHRLTTWN------ 572
                 + YF   +G  +      +       ++ D  RF+  K+  H  T WN      
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKIR-HDSTAWNASGSIL 521

Query: 573 ------RYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPP----IIISGH----QFTMISH 618
                 ++YK       I     K  R V A   DF+P     +I S +    +  +++ 
Sbjct: 522 NTLQQLKFYK-----PYICDNDPKYERLVNA-ILDFLPKIEENLICSKYTDLLRIALMAE 575

Query: 619 HQDAAREYLEAYK 631
            +     + EA+K
Sbjct: 576 DEAI---FEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.9 bits (170), Expect = 2e-12
 Identities = 79/588 (13%), Positives = 167/588 (28%), Gaps = 169/588 (28%)

Query: 239 KSGQIESSV-DILEDYLKGHPTEADFG-VIDLLASMLVQMNAYDRVLKHIELVDLVYYSG 296
           ++G+ +    DIL  +        D   V D+  S+L +    D ++   + V       
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK-EEIDHIIMSKDAVSGTLR-- 66

Query: 297 KELLLALKIK-AGICHIQLGNTDKA--EILLTAIHWENV--SDHAESINEIAD-LFKNRE 350
             L   L  K   +    +    +   + L++ I  E    S       E  D L+ + +
Sbjct: 67  --LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 351 LYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARL 410
           +++   KY                ++   +  L L+          +AL  L    +  +
Sbjct: 125 VFA---KY----------------NVSRLQPYLKLR----------QALLELRPAKNVLI 155

Query: 411 ---------TLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIR-------- 453
                     +A  +    K +                    K    WLN++        
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCK---------------MDFKIF--WLNLKNCNSPETV 198

Query: 454 IKI--KLCRIYKAKGMIEGFVDMLLPLVCESSHQE--ETFNHEEHR--LLIID------- 500
           +++  KL                 + L   S   E       + +   LL++        
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 501 ------LCKTL-----ASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTD 549
                  CK L       +  +  A    ++ L           E    L   + C   D
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSLLLKYLDCRPQD 317

Query: 550 -PKLWFDGVRFMVKLHP-----------HRLTTWNRY-YKLVSRFEKIFSKHAKLLR--N 594
            P+        ++  +P             L TW+ + +    +   I      +L    
Sbjct: 318 LPRE-------VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 595 VRAKYRDF--------VPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTA 646
            R  +           +P I++S   F +I          L  Y L+ + P  +     +
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI---S 427

Query: 647 LINLALGVRLQNK-----HQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLAA 701
           + ++ L ++++ +     H+              + ++     YNI + +    L+    
Sbjct: 428 IPSIYLELKVKLENEYALHR-------------SIVDH-----YNIPKTFDSDDLIPPYL 469

Query: 702 SYYEKVLAMYQKDCIIPGFPDHMEDWKPGHS-DLRREAAYNLHLIYKK 748
             Y      Y           H+++ +      L R    +   + +K
Sbjct: 470 DQY-----FYSH------IGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 79.8 bits (197), Expect = 1e-15
 Identities = 43/351 (12%), Positives = 80/351 (22%), Gaps = 25/351 (7%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
                AL   +  + VL +   L  E   +         AL      +     A     +
Sbjct: 113 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPE 172

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
                                +  L +A    P               L   QR   V  
Sbjct: 173 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC 232

Query: 218 QMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGV-IDLLASMLVQM 276
           Q   L P+ + A+       Q    ++     L    + H       V I   +     +
Sbjct: 233 QAHGLTPQQVVAIASNGGGKQALETVQRL---LPVLCQAHGLTPQQVVAIASNSGGKQAL 289

Query: 277 NAYDRVL----KHIEL--VDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWE 330
               R+L    +   L    +V  +            G     L    +   +L   H  
Sbjct: 290 ETVQRLLPVLCQAHGLTPQQVVAIASN----------GGGKQALETVQRLLPVLCQAHGL 339

Query: 331 NVSDHAESINEIADLFKNRELYSTALKYYHM-LEANAGVHNDGCLHLKIAECSLALKERE 389
                  +I       +  E     L                            AL+  +
Sbjct: 340 T-PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT---PEQVVAIASNGGGKQALETVQ 395

Query: 390 KSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYV 440
           + +    +A  +  + + A  +           +  + +L     L  + V
Sbjct: 396 RLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQV 446

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 79.4 bits (196), Expect = 1e-15
 Identities = 42/372 (11%), Positives = 86/372 (23%), Gaps = 30/372 (8%)

Query: 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSS 160
             AL   +  + VL +   L  +   +         AL    + +     A     +   
Sbjct: 82  KQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV 141

Query: 161 LWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMV 220
                             +  L +A    P               L   QR   V  Q  
Sbjct: 142 AIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH 201

Query: 221 QLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYD 280
            L P+ + A+       Q    ++  + +L       P +     I         +    
Sbjct: 202 GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV--AIASNGGGKQALETVQ 259

Query: 281 RVL----KHIELV--DLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLT-AIHWENVS 333
           R+L    +   L    +V  +                  L    +   +L  A       
Sbjct: 260 RLLPVLCQAHGLTPQQVVAIASN----------SGGKQALETVQRLLPVLCQAHGLT--P 307

Query: 334 DHAESINEIADLFKNRELYSTALKYY-HMLEANAGVHNDGCLHLKIAECSLALKEREKSI 392
               +I       +  E     L                            AL+  ++ +
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP---QQVVAIASHDGGKQALETVQRLL 364

Query: 393 IYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNI 452
               +A  +  + + A  +           +  + +L     L       ++  A   + 
Sbjct: 365 PVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGL-----TPEQVVAIASHD 419

Query: 453 RIKIKLCRIYKA 464
             K  L  + + 
Sbjct: 420 GGKQALETVQRL 431

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 42/338 (12%), Positives = 83/338 (24%), Gaps = 17/338 (5%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
                AL   +  + VL +   L  E   +    G    AL    + +     A     +
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 206

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
                                +  L +A    P               L   QR   V  
Sbjct: 207 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC 266

Query: 218 QMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMN 277
           Q   L P+ + A+   +   Q    ++  + +L       P +     I         + 
Sbjct: 267 QAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVV--AIASNGGGKQALE 324

Query: 278 AYDRVL----KHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVS 333
              R+L    +   L         + ++A+          L    +   +L   H     
Sbjct: 325 TVQRLLPVLCQAHGL-------TPQQVVAIASH-DGGKQALETVQRLLPVLCQAHGLT-P 375

Query: 334 DHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSII 393
           +   +I       +  E     L      +A+                  AL+  ++ + 
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPEQVVAIASHDGGKQALETVQRLLP 433

Query: 394 YFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTP 431
              +A  +    + A  +              +S   P
Sbjct: 434 VLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDP 471

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 44/377 (11%), Positives = 87/377 (23%), Gaps = 32/377 (8%)

Query: 96  GDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYK 155
           G  +   A+  +  A++     + L  E   +         AL    + +     A    
Sbjct: 45  GGVTAVEAVHAWRNALT--GAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 102

Query: 156 QKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADV 215
            +                     +  L +A    P               L   Q    V
Sbjct: 103 PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPV 162

Query: 216 YRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQ 275
             Q   L PE + A+       Q    ++  + +L       P +     I         
Sbjct: 163 LCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV--AIASNGGGKQA 220

Query: 276 MNAYDRVLKH----IEL--VDLVYYSGKELLLALKIKAGICHIQLGNTDKA-EILLTAIH 328
           +    R+L        L    +V  +            G     L    +   +L  A  
Sbjct: 221 LETVQRLLPVLCQAHGLTPQQVVAIASN----------GGGKQALETVQRLLPVLCQAH- 269

Query: 329 WENVSDHAESINEIADLFKNRELYSTALKYY-HMLEANAGVHNDGCLHLKIAECSLALKE 387
                    +I   +   +  E     L                            AL+ 
Sbjct: 270 -GLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP---QQVVAIASNGGGKQALET 325

Query: 388 REKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHA 447
            ++ +    +A  +    + A  +           +  + +L     L       ++  A
Sbjct: 326 VQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGL-----TPEQVVA 380

Query: 448 WWLNIRIKIKLCRIYKA 464
              N   K  L  + + 
Sbjct: 381 IASNGGGKQALETVQRL 397

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.6 bits (142), Expect = 4e-09
 Identities = 14/129 (10%), Positives = 26/129 (20%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
                AL   +  + VL +   L  E   +    G    AL    + +     A     +
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPE 410

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
                                +  L +A    P               L +         
Sbjct: 411 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPD 470

Query: 218 QMVQLCPEN 226
             +     +
Sbjct: 471 PALAALTND 479

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.2 bits (141), Expect = 6e-09
 Identities = 44/360 (12%), Positives = 90/360 (25%), Gaps = 30/360 (8%)

Query: 95  LGDASLHYALG--RYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAA 152
           L     H+     R  EA+  +   +R      ++  +L +         +A+  +  A 
Sbjct: 1   LEHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNAL 60

Query: 153 CYK-----QKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG 207
                    +                     +  L +A    P               L 
Sbjct: 61  TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 120

Query: 208 NFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVID 267
             QR   V  Q   L PE + A+       Q    +++ + +L       P +     I 
Sbjct: 121 TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVV--AIA 178

Query: 268 LLASMLVQMNAYDRVL----KHIELV--DLVYYSGKELLLALKIKAGICHIQLGNTDKA- 320
                   +    R+L    +   L    +V  +            G     L    +  
Sbjct: 179 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN----------GGGKQALETVQRLL 228

Query: 321 EILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAE 380
            +L  A           +I       +  E     L      +A+             + 
Sbjct: 229 PVLCQAHGLT--PQQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASNSG 284

Query: 381 CSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYV 440
              AL+  ++ +    +A  +    + A  +           +  + +L     L  + V
Sbjct: 285 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 344

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 77.6 bits (191), Expect = 5e-15
 Identities = 20/126 (15%), Positives = 34/126 (26%)

Query: 105 GRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKL 164
                 +  L   +R   +   ++ +L      +G+T                       
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 165 IFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCP 224
           +      Q     A   L +A  A P    +   L     + G  + AA  Y +  QL P
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122

Query: 225 ENIEAL 230
           E     
Sbjct: 123 EEPYIT 128

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 22/143 (15%), Positives = 46/143 (32%), Gaps = 2/143 (1%)

Query: 88  CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGC 147
                 ML DA     +G        +   + L    P +   LG V       A+A   
Sbjct: 22  DFVAWLMLADA--ELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79

Query: 148 YWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG 207
              A+    +   +   +   L + G    A +  + A +  P +  +   L +    L 
Sbjct: 80  LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139

Query: 208 NFQRAADVYRQMVQLCPENIEAL 230
           +++    +  Q+     + + A+
Sbjct: 140 DWRALDVLSAQVRAAVAQGVGAV 162

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 2/116 (1%)

Query: 172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK 231
             D    +  L  AV+  P DF     LA   + +G+        ++ + L P + EA+ 
Sbjct: 2   TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61

Query: 232 MGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIE 287
              ++     +   +  +L+      P      +   L   L      +       
Sbjct: 62  RLGRVRWTQQRHAEAAVLLQQASDAAPEHPG--IALWLGHALEDAGQAEAAAAAYT 115

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 20/134 (14%), Positives = 36/134 (26%), Gaps = 1/134 (0%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
             + +   R+ EA  +L +      E P     LG   +  G    A   Y  A     +
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
           +  +   +  W     D        ++   A           A L  +  +        R
Sbjct: 124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDA-SAAEQLACAR 182

Query: 218 QMVQLCPENIEALK 231
              Q    ++  L 
Sbjct: 183 TRAQAIAASVRPLA 196

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 16/113 (14%), Positives = 26/113 (23%), Gaps = 16/113 (14%)

Query: 610 GHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAF 669
                 +               L P +P        A+  L      Q +H    +    
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPGHP-------EAVARLGRVRWTQQRHA---EAAVL 79

Query: 670 LYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPD 722
           L      A         +  A    G    AA+ Y +         ++P  P 
Sbjct: 80  LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ------LLPEEPY 126

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 25/215 (11%), Positives = 58/215 (26%), Gaps = 10/215 (4%)

Query: 315 GNTDKAEILL-TAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGC 373
            +  +  + L  A+          +   +AD        +            A       
Sbjct: 3   ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQ--RGLALHPGHPE 58

Query: 374 LHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPM 433
              ++       +   ++ +   +A     ++    L L   L +  + E A +  T   
Sbjct: 59  AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT--R 116

Query: 434 SLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGM-IEGFVDMLLPLVCESSHQEETFNHE 492
           + +          A  LN R ++   R        +   V   +  V   +   E  +  
Sbjct: 117 AHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAA 175

Query: 493 EHRLLIIDLCKTL-ASLHRYEDAIKIINLILKLGY 526
           E         + + AS+             L++G+
Sbjct: 176 EQLACARTRAQAIAASVRPLAPTRVRSKGPLRVGF 210

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 77.3 bits (190), Expect = 5e-15
 Identities = 53/363 (14%), Positives = 123/363 (33%), Gaps = 47/363 (12%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILG----------LVHDALGNTAKAMGC 147
           A ++Y +GR  +    + +V  + E+  + Y I             +        +A  C
Sbjct: 101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVC 160

Query: 148 YWLAACYKQKDSSLWK---LIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV 204
           +  A   K K+        +    L     +  A+  L +A++ +P++  LK  LA    
Sbjct: 161 FEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH 220

Query: 205 EL----GNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTE 260
           ++            +  + ++  P   + L+  AK Y++  + + ++++L+  L+  P  
Sbjct: 221 KMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN 280

Query: 261 ADF----GVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKA--------- 307
           A      G         V     + +    +L++L+ ++   L  A +            
Sbjct: 281 AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSIL 340

Query: 308 GICHIQLGNTDKAEILL-TAIHWENVSDHAESINEI--ADLFKNRELYSTALKYYHMLEA 364
              H      ++AE         E      + ++           +    A+ ++  +E 
Sbjct: 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHF--IEG 398

Query: 365 NAGVHNDGCLHLKIAECSLALKEREKSIIYFY-KALQILEDNIDARLTLASLLLEDAKDE 423
                      +KI + S   ++ +  +       L     + +A   LA L   + K +
Sbjct: 399 -----------VKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQ 447

Query: 424 EAI 426
           +A 
Sbjct: 448 QAD 450

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 69.2 bits (169), Expect = 2e-12
 Identities = 63/372 (16%), Positives = 109/372 (29%), Gaps = 78/372 (20%)

Query: 98  ASLHYALGRYEEAISVLHEVIRL---------EEELPNSYHILGLVHDALGNTAKAMGCY 148
           A L +  G+ E A+  L +   L         E     ++     V+  +G  +      
Sbjct: 58  AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117

Query: 149 WLAACYKQKDSSLWKLIFPWL----------IEQGDTTWAMSCLSEAVKADPNDFKLKFH 198
                  +K SS +++  P L                  A  C  +A++  P + +    
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177

Query: 199 LASLYVELGNFQR---AADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLK 255
           LA     L N+     A D  RQ ++L P+N     + A    K  +             
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE-----------EG 226

Query: 256 GHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLG 315
               E                   +  L+    V  V  S           A   + +  
Sbjct: 227 EEEGEG--------------EKLVEEALEKAPGVTDVLRS-----------AAKFYRRKD 261

Query: 316 NTDKA-EILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCL 374
             DKA E+L  A+  E + ++A    +I   ++ +      L+   M             
Sbjct: 262 EPDKAIELLKKAL--EYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK-------- 311

Query: 375 HLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMS 434
                     L+    ++ +  KA +  ++       LASL     + EEA        S
Sbjct: 312 ---------LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362

Query: 435 LENKYVNSDKTH 446
            E   V     H
Sbjct: 363 KELTPVAKQLLH 374

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 77.4 bits (190), Expect = 1e-14
 Identities = 68/614 (11%), Positives = 142/614 (23%), Gaps = 81/614 (13%)

Query: 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSS 160
             AL   +  + VL +   L      +         AL    + +     A         
Sbjct: 202 KQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVV 261

Query: 161 LWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMV 220
                             +  L +A    P+              L   QR   V  Q  
Sbjct: 262 AIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAH 321

Query: 221 QLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYD 280
            L P+ + A+       Q    ++     L    + H    D   +  +AS      A +
Sbjct: 322 GLTPDQVVAIASHDGGKQALETVQRL---LPVLCQAHGLTPDQ--VVAIASNGGGKQALE 376

Query: 281 RVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESIN 340
            V + + ++   +    + ++A+    G     L    +   +L   H     D   +I 
Sbjct: 377 TVQRLLPVLCQAHGLTPDQVVAIASNGGK--QALETVQRLLPVLCQAHGLT-PDQVVAIA 433

Query: 341 EIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQ 400
                 +  E     L      + +                  AL+  ++ +    +A  
Sbjct: 434 SHDGGKQALETVQRLLPVLC--QTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHG 491

Query: 401 ILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCR 460
           +  D + A  +        A  +  + +L     L       D+  A   N   K  L  
Sbjct: 492 LTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGL-----TPDQVVAIASNGGGKQALET 546

Query: 461 IYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINL 520
           + +                     Q      ++   +         +L   +  + ++  
Sbjct: 547 VQRL---------------LPVLCQAHGLTPDQVVAIAS-NGGGKQALETVQRLLPVLCQ 590

Query: 521 ILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSR 580
              L      V+   +                                       +L+  
Sbjct: 591 AHGLT----QVQVVAIASNIGG-------------------------KQALETVQRLLPV 621

Query: 581 FEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLIN 640
             +                   V  I         +   Q       +A+ L P+     
Sbjct: 622 LCQ-----------AHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQV--- 667

Query: 641 LCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGLVSLA 700
                A+ +   G +     Q   + L  L     L +    A+ +       +  V   
Sbjct: 668 ----VAIASNGGGKQALETVQ---RLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRL 720

Query: 701 ASYYEKVLAMYQKD 714
                +   +    
Sbjct: 721 LPVLCQAHGLTPDQ 734

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 75.8 bits (186), Expect = 3e-14
 Identities = 41/340 (12%), Positives = 89/340 (26%), Gaps = 9/340 (2%)

Query: 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSS 160
             AL   ++ + VL +   L  +   +         AL    + +     A         
Sbjct: 473 KQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVV 532

Query: 161 LWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMV 220
                             +  L +A    P+              L   QR   V  Q  
Sbjct: 533 AIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH 592

Query: 221 QLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYD 280
            L    + A+       Q    ++  + +L       P +        +AS      A +
Sbjct: 593 GLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQV-----VAIASHDGGKQALE 647

Query: 281 RVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESIN 340
            V + + ++   +    + ++A+    G     L    +   +L   H     +   +I 
Sbjct: 648 TVQRLLPVLCQAHGLTPDQVVAIASN-GGGKQALETVQRLLPVLCQAH-GLTQEQVVAIA 705

Query: 341 EIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQ 400
                 +  E     L      +A+    +             AL+  ++ +    +A  
Sbjct: 706 SNNGGKQALETVQRLLPVL--CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 763

Query: 401 ILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYV 440
           +    + A  +           +  + +L     L    V
Sbjct: 764 LTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQV 803

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 68.5 bits (167), Expect = 6e-12
 Identities = 42/343 (12%), Positives = 87/343 (25%), Gaps = 9/343 (2%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
                AL   +  + VL +   L      +         AL    + +     A      
Sbjct: 436 DGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPD 495

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
                                +  L +A    P+              L   QR   V  
Sbjct: 496 QVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 555

Query: 218 QMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMN 277
           Q   L P+ + A+       Q    ++  + +L         +        +AS +    
Sbjct: 556 QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVA-----IASNIGGKQ 610

Query: 278 AYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAE 337
           A + V + + ++   +      ++A+          L    +   +L   H     D   
Sbjct: 611 ALETVQRLLPVLCQAHGLTPAQVVAIASH-DGGKQALETVQRLLPVLCQAH-GLTPDQVV 668

Query: 338 SINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYK 397
           +I       +  E     L      +A+                  AL+  ++ +    +
Sbjct: 669 AIASNGGGKQALETVQRLLPVLC--QAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQ 726

Query: 398 ALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYV 440
           A  +  D + A  +           +  + +L     L    V
Sbjct: 727 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQV 769

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 63.1 bits (153), Expect = 3e-10
 Identities = 73/625 (11%), Positives = 154/625 (24%), Gaps = 77/625 (12%)

Query: 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSS 160
             AL   +  + VL +   L  +   +    G    AL    + +     A         
Sbjct: 372 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLTPDQVV 430

Query: 161 LWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMV 220
                             +  L +     P               L   Q+   V  Q  
Sbjct: 431 AIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAH 490

Query: 221 QLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADF-----GVIDLLASMLVQ 275
            L P+ + A+       Q    ++  + +L       P +        G    L ++   
Sbjct: 491 GLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 550

Query: 276 MNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDH 335
           +    +    +    +V  +            G     L    +   +L   H       
Sbjct: 551 LPVLCQAHG-LTPDQVVAIASN----------GGGKQALETVQRLLPVLCQAHGLT-QVQ 598

Query: 336 AESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYF 395
             +I       +  E     L      +A+                  AL+  ++ +   
Sbjct: 599 VVAIASNIGGKQALETVQRLLPVLC--QAHGLTPAQVVAIASHDGGKQALETVQRLLPVL 656

Query: 396 YKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIK 455
            +A  +  D + A  +           +  + +L     L       ++  A   N   K
Sbjct: 657 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL-----TQEQVVAIASNNGGK 711

Query: 456 IKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAI 515
             L             V  LLP       Q      ++   +  +      +L   +  +
Sbjct: 712 QAL-----------ETVQRLLP----VLCQAHGLTPDQVVAIASNG-GGKQALETVQRLL 755

Query: 516 KIINLILKL------GYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLT 569
            ++     L              K+ L  +   +P    D  L    V  +         
Sbjct: 756 PVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNI----- 810

Query: 570 TWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEA 629
                 + +   +    +   +L       +D V  I  +      +   Q       + 
Sbjct: 811 ---GGKQALETVQ----RLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQD 863

Query: 630 YKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIAR 689
           + L P+          A+ +   G +     Q   + L  L  +  L  +   A+ +   
Sbjct: 864 HGLTPDQ-------VVAIASNIGGKQALETVQ---RLLPVLCQDHGLTLDQVVAIASNGG 913

Query: 690 AYHHVGLVSLAASYYEKVLAMYQKD 714
                     A    +++L +  +D
Sbjct: 914 K--------QALETVQRLLPVLCQD 930

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.1 bits (127), Expect = 3e-07
 Identities = 43/342 (12%), Positives = 101/342 (29%), Gaps = 26/342 (7%)

Query: 101  HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSS 160
              AL   +  + VL +   L +E   +         AL    + +     A         
Sbjct: 677  KQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVV 736

Query: 161  LWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMV 220
                              +  L +A    P               L   QR   V  Q  
Sbjct: 737  AIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDH 796

Query: 221  QLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYD 280
             L    + A+       Q    ++  + +L         +        +AS +    A +
Sbjct: 797  GLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQV-----VAIASNIGGKQALE 851

Query: 281  RVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESIN 340
             V + + ++   +    + ++A+    G     L    +   +L         DH  +++
Sbjct: 852  TVQRLLPVLCQDHGLTPDQVVAIASNIGGKQ-ALETVQRLLPVLCQ-------DHGLTLD 903

Query: 341  EIADLFKNRELYSTALKYYHML-----EANAGVHNDGCLHLKIAECSLALKEREKSIIYF 395
            ++  +  N      AL+    L     + +    +        +    AL+  ++ +   
Sbjct: 904  QVVAIASNGG--KQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVL 961

Query: 396  YKALQILEDNIDA------RLTLASLLLEDAKDEEAISLLTP 431
             +   +  + + A      +  L S++ + ++ + A++ LT 
Sbjct: 962  CQDHGLTPNQVVAIASNGGKQALESIVAQLSRPDPALAALTN 1003

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 75.6 bits (185), Expect = 3e-14
 Identities = 41/247 (16%), Positives = 84/247 (34%), Gaps = 4/247 (1%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           A++    G  EEA+ +  + + +  E   ++  L  V    G   +A+  Y  A      
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
            +  +  +   L E  D   A+ C + A++ +P       +LAS++ + GN   A   YR
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135

Query: 218 QMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD---FGVIDLLASMLV 274
             ++L P+  +A    A   Q         + ++  +     + +      +    SML 
Sbjct: 136 TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLY 195

Query: 275 QMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSD 334
            ++   R     E    +      +L     +            +   + +       S 
Sbjct: 196 PLSHGFR-KAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSH 254

Query: 335 HAESINE 341
             +SI  
Sbjct: 255 LMQSIPG 261

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 46.0 bits (108), Expect = 5e-05
 Identities = 37/237 (15%), Positives = 81/237 (34%), Gaps = 48/237 (20%)

Query: 188 ADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSV 247
           + P       +LA++  E GN + A  +YR+ +++ PE   A    A + Q+ G+++ ++
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63

Query: 248 DILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKA 307
              ++ ++  PT AD      + + L +M      L+                 A++I  
Sbjct: 64  MHYKEAIRISPTFAD--AYSNMGNTLKEMQDVQGALQCYT-------------RAIQINP 108

Query: 308 GICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAG 367
                                       A++ + +A + K+      A+  Y    A   
Sbjct: 109 --------------------------AFADAHSNLASIHKDSGNIPEAIASYR--TALKL 140

Query: 368 VHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDAR-----LTLASLLLED 419
             +    +  +A C   + +         K + I+ D ++           S+L   
Sbjct: 141 KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPL 197

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 74.5 bits (183), Expect = 5e-14
 Identities = 52/344 (15%), Positives = 111/344 (32%), Gaps = 26/344 (7%)

Query: 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSS 160
                +Y+ A  V  +V+ +    PN    L  V+   G+ A+A         Y  + S+
Sbjct: 94  ALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLYN-RSSA 151

Query: 161 LWKLIFPWLIEQGDTTWAMSC----------LSEAVKADPNDFKLK------FHLASLYV 204
              L    L++  D   A++              A K    D  +K      +    +Y 
Sbjct: 152 CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYT 211

Query: 205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFG 264
            L NF RA + Y++ + +  +  EA       +  +   E  + +  +Y      +A F 
Sbjct: 212 NLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF- 270

Query: 265 VIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILL 324
            +  L  + +   +++  L+  E         ++    L  K                + 
Sbjct: 271 -LRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCK-ADTLFVRSRFIDVLAIT 328

Query: 325 TAIHWENVSDHAESINEIADLFKNRELYSTALKYYH-MLEANAGVHNDGCLHLKIAECSL 383
           T I  E    + +               +      + +++ +          L +    L
Sbjct: 329 TKIL-EIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP---EKAVTWLAVGIYYL 384

Query: 384 ALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAIS 427
            + +  ++  YF K+  +      A +  A     + + ++AIS
Sbjct: 385 CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAIS 428

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 71.8 bits (176), Expect = 4e-13
 Identities = 48/354 (13%), Positives = 106/354 (29%), Gaps = 31/354 (8%)

Query: 88  CPEIRRMLGDASLHYALGRYEEAISV-LHEVIRLEEELPNSYHILGLVHDALGNTAKAMG 146
           C E    L    L  A   ++  + +      + +     S ++L L   +  +  +   
Sbjct: 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292

Query: 147 CYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL 206
            Y  +    +K S L       L  +      ++  ++ ++ DP +  +     +   E 
Sbjct: 293 DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES 352

Query: 207 GNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVI 266
           G   +   +   +V   PE           Y    +I  +           P        
Sbjct: 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP--AW 410

Query: 267 DLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKA---------GICHIQLGNT 317
              A        +D+ +          Y+      A ++           G+ H+QLGN 
Sbjct: 411 IGFAHSFAIEGEHDQAIS--------AYT-----TAARLFQGTHLPYLFLGMQHMQLGNI 457

Query: 318 DKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYH-----MLEANAGVHNDG 372
             A   L + +          +NE+  +  N+    TA+ ++      + +  +      
Sbjct: 458 LLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516

Query: 373 CLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAI 426
                +      LK  + +I    + L +  ++ +    +A + L       AI
Sbjct: 517 ATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAI 570

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 68.3 bits (167), Expect = 5e-12
 Identities = 33/169 (19%), Positives = 54/169 (31%), Gaps = 7/169 (4%)

Query: 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSS 160
               G +++AIS      RL +     Y  LG+ H  LGN   A      +    Q D  
Sbjct: 417 FAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL 476

Query: 161 LWKLIFPWLIEQGDTTWAMSCLSEAVKA-------DPNDFKLKFHLASLYVELGNFQRAA 213
           L   +      + D   A++    A+         +        +L   Y +L  +  A 
Sbjct: 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536

Query: 214 DVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262
           D   Q + L   +       A +Y        ++  L + L   P E  
Sbjct: 537 DALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 67.2 bits (164), Expect = 1e-11
 Identities = 44/349 (12%), Positives = 99/349 (28%), Gaps = 41/349 (11%)

Query: 100 LHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS 159
           ++  L  ++ A     E + ++ +   ++  L   H    +    +      + Y ++D+
Sbjct: 209 VYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDA 268

Query: 160 SLWKLIFPWLI---EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVY 216
           +  + ++   +      D          ++        L    A        F     + 
Sbjct: 269 AFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAIT 328

Query: 217 RQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM 276
            +++++ P N++   +      +SG+      I  D +  HP +A         + L   
Sbjct: 329 TKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAV--------TWLAVG 380

Query: 277 NAYDRVLKHIELVDLVYYSGKELLLALKIKA---------GICHIQLGNTDKA-EILLTA 326
             Y  V K  E     Y+S K    +  +                  G  D+A     TA
Sbjct: 381 IYYLCVNKISEARR--YFS-K----SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433

Query: 327 IHWENVSDHAESINEIADLFKNRELYSTALKYYHM-LEANAGVHNDGCLHLKIAECSLAL 385
                          +            A +Y             D  L  ++   +   
Sbjct: 434 A--RLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ---YDPLLLNELGVVAFNK 488

Query: 386 KEREKSIIYFYKALQILE-------DNIDARLTLASLLLEDAKDEEAIS 427
            + + +I +F  AL +++               L     +    + AI 
Sbjct: 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.2 bits (151), Expect = 3e-10
 Identities = 56/386 (14%), Positives = 114/386 (29%), Gaps = 51/386 (13%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNS----------------YHILGLVHDALGNT 141
           A     L  ++ A+++L E     ++  N+                 ++ G V+  L N 
Sbjct: 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216

Query: 142 AKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMS---CLSEAVKADPNDFKLKFH 198
            +A  CY  A     K    +  +    +   D  W +      S   K D    +  + 
Sbjct: 217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276

Query: 199 LASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHP 258
           L        +  R A+ Y   +    ++ + L   A       +    + I    L+  P
Sbjct: 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP 336

Query: 259 TEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIK---------AGI 309
              D  V  L  + L +    +          L   S       +             GI
Sbjct: 337 YNLD--VYPLHLASLHESGEKN---------KLYLISND----LVDRHPEKAVTWLAVGI 381

Query: 310 CHIQLGNTDKAEILLT-AIHWENVSDHAESINEIADLFKNRELYSTALKYY-HMLEANAG 367
            ++ +    +A    + +   +       +    A  F     +  A+  Y        G
Sbjct: 382 YYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439

Query: 368 VHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAIS 427
            H     +L +    + L     +  Y   +  + + +      L  +    +  + AI+
Sbjct: 440 THLP---YLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN 496

Query: 428 LLTPPMSLENKYVNSDKTHAW-WLNI 452
                + L  K  +++K  A  W N+
Sbjct: 497 HFQNALLLVKKTQSNEKPWAATWANL 522

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 76/479 (15%), Positives = 140/479 (29%), Gaps = 82/479 (17%)

Query: 291 LVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRE 350
            VY    +   A  +   +    L N   A   L A     + D   ++N + +    R+
Sbjct: 125 QVYCCTGDYARAKCL---LTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRK 181

Query: 351 LYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARL 410
               A K       + G+  +  +     +    L   +++   + +AL +     +A  
Sbjct: 182 DEKNANKLL---MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238

Query: 411 TLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEG 470
            L S  L  A +E  + L      L     + +          +K+            E 
Sbjct: 239 QLVSNHLLTADEEWDLVL-----KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE- 292

Query: 471 FVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFP 530
                        +       E+   L++    TL    R+ D + I   IL++     P
Sbjct: 293 ------------DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI----DP 336

Query: 531 VEKEELYFLGAQIPCNTTDPKLW--------FDGVRFMVKLHPHRLTTWN---RYYKLVS 579
              +      A          L         +     +V  HP +  TW     YY  V+
Sbjct: 337 YNLDVYPLHLAS---------LHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN 387

Query: 580 RFE---KIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPEN 636
           +     + FSK + +          F P  I   H F +   H  A   Y  A +L    
Sbjct: 388 KISEARRYFSKSSTM-------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440

Query: 637 PLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHHVGL 696
            L  L +G   + L                  +L ++  L +     L  +     +   
Sbjct: 441 HLPYLFLGMQHMQL-------GNIL---LANEYLQSSYALFQYDPLLLNELGVVAFNKSD 490

Query: 697 VSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLA 755
           +  A ++++  L       ++     + + W             NL   Y+K    D A
Sbjct: 491 MQTAINHFQNALL------LVKKTQSNEKPWAATW--------ANLGHAYRKLKMYDAA 535

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 11/68 (16%), Positives = 23/68 (33%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
              +  L  Y+ AI  L++ + L     N +  + LV+        A+     +      
Sbjct: 523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582

Query: 158 DSSLWKLI 165
           +     L+
Sbjct: 583 EIMASDLL 590

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 43/256 (16%), Positives = 82/256 (32%), Gaps = 18/256 (7%)

Query: 185 AVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE 244
            +  +PND    F LA +Y   G++ RA  +  +   L   +     + A    K    +
Sbjct: 112 DITGNPNDA---FWLAQVYCCTGDYARAKCLLTKE-DLYNRSSACRYLAAFCLVKLYDWQ 167

Query: 245 SSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSG--KELLLA 302
            ++++L +       E +   + +    + ++ A    L+     +L  +    +    A
Sbjct: 168 GALNLLGETNPFRKDEKNANKLLMQDGGI-KLEASMCYLRGQVYTNLSNFDRAKECYKEA 226

Query: 303 LKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYH-- 360
           L + A  C+          +L     W+ V     S     D    R LY   L      
Sbjct: 227 LMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285

Query: 361 --------MLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTL 412
                    L +  G+     L L  A+           +    K L+I   N+D     
Sbjct: 286 DELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH 345

Query: 413 ASLLLEDAKDEEAISL 428
            + L E  +  +   +
Sbjct: 346 LASLHESGEKNKLYLI 361

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 69.1 bits (169), Expect = 8e-14
 Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 8/150 (5%)

Query: 103 ALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLW 162
           +    E  +  L + IR   +    + +LG  +    + + ++  Y  A   + +++ L+
Sbjct: 22  SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELY 81

Query: 163 KLIFPWLIEQGDTTW---AMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQM 219
             +   L  Q          + + +A+  D N+      LAS      N+ +A ++++++
Sbjct: 82  AALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKV 141

Query: 220 VQLCPENIEALKMG-----AKLYQKSGQIE 244
           + L    I   ++      AKL Q+   +E
Sbjct: 142 MDLNSPRINRTQLVESINMAKLLQRRSDLE 171

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 52.9 bits (127), Expect = 4e-08
 Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 5/116 (4%)

Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228
              Q +    +  L + ++A+P + +    L   Y+   ++  +   YRQ +QL  EN E
Sbjct: 20  FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79

Query: 229 AL-KMGAKLYQKSGQIES--SVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDR 281
               +   LY ++ Q  +  +  +++  L     E     + LLAS       Y +
Sbjct: 80  LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEIT--ALMLLASDAFMQANYAQ 133

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 15/130 (11%), Positives = 46/130 (35%), Gaps = 3/130 (2%)

Query: 136 DALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKL 195
            +  N    +           ++S  W L+  + + Q D + ++    +A++    + +L
Sbjct: 21  ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL 80

Query: 196 KFHLASLYVELGNFQ---RAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILED 252
              LA++     +     +   +  + + L    I AL + A           ++++ + 
Sbjct: 81  YAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQK 140

Query: 253 YLKGHPTEAD 262
            +  +    +
Sbjct: 141 VMDLNSPRIN 150

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 7/101 (6%)

Query: 610 GHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAF 669
           G  +   + + ++   Y +A +L  EN  +   + T L         Q      AQ  A 
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLY-------YQASQHMTAQTRAM 103

Query: 670 LYNNLRLAENSQEALYNIARAYHHVGLVSLAASYYEKVLAM 710
           +   L L  N   AL  +A         + A   ++KV+ +
Sbjct: 104 IDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 71.9 bits (177), Expect = 9e-14
 Identities = 42/351 (11%), Positives = 91/351 (25%), Gaps = 61/351 (17%)

Query: 89  PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCY 148
            ++   L +   HY    ++    +   V+  +    +   +       L    +     
Sbjct: 22  LDVVVSLAER--HYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLS 79

Query: 149 WLAACYKQKDSSLWKLIFPWLIEQGDTTW-AMSCLSEAVKADPNDFKLKFHLASLYVELG 207
                    +   W  +  + +  G     A   LS+A   +             +    
Sbjct: 80  HKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVES 139

Query: 208 NFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVID 267
              +A   Y    QL       +      Y  +   + +      + +            
Sbjct: 140 EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA---ERFFSQA----------- 185

Query: 268 LLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKA------- 320
                 + +   D  +   E+                   G+   Q G    A       
Sbjct: 186 ------LSIAPEDPFV-MHEV-------------------GVVAFQNGEWKTAEKWFLDA 219

Query: 321 -EILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEA----NAGVHNDGCLH 375
            E +    +   V      +N +  + +  + Y+ AL Y+         NA  ++     
Sbjct: 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYS----- 274

Query: 376 LKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAI 426
             I      +   E ++ YF+ AL +  D+  +   L   +     D EA 
Sbjct: 275 -AIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAY 324

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 39/272 (14%), Positives = 88/272 (32%), Gaps = 21/272 (7%)

Query: 102 YALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGN-TAKAMGCYWLAACYKQKDSS 160
             L +  E   + H+++ L    P S+  +G  +  +G+    A      A   ++    
Sbjct: 67  VELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP 126

Query: 161 LWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMV 220
            W         + +   AM+    A +          ++   Y    N + A   + Q +
Sbjct: 127 AWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQAL 186

Query: 221 QLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM-NAY 279
            + PE+   +     +  ++G+ +++     D L+      +   +D    +L  + +  
Sbjct: 187 SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246

Query: 280 DRVLKHIELVDLVYYSGKELLLALKIKA---------GICHIQLGNTDKAEILLT-AIHW 329
            ++ K+ E +            AL +           G  H  +GN + A      A+  
Sbjct: 247 RKLKKYAEAL-------DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299

Query: 330 ENVSDHAESINEIADLFKNRELYSTALKYYHM 361
               D   S+  +    +     S A     +
Sbjct: 300 R--RDDTFSVTMLGHCIEMYIGDSEAYIGADI 329

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.8 bits (130), Expect = 8e-08
 Identities = 32/266 (12%), Positives = 74/266 (27%), Gaps = 39/266 (14%)

Query: 182 LSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSG 241
           + E+V     +  +   LA  +    +F+    +   +++  P +   L +      +  
Sbjct: 11  IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELN 70

Query: 242 QIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLL 301
           +      +    +  +P+           S       Y  V    E     Y S      
Sbjct: 71  KANELFYLSHKLVDLYPSNPV--------SWFAVGCYYLMVGHKNEHA-RRYLS-----K 116

Query: 302 ALKIKA---------GICHIQLGNTDKA-EILLTAIHWENVSDHAESINEIADLFKNREL 351
           A  ++          G         D+A     TA   + +      +  I   +     
Sbjct: 117 ATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAA--QLMKGCHLPMLYIGLEYGLTNN 174

Query: 352 YSTALKYYHM-LEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILE------- 403
              A +++   L        D  +  ++   +    E + +  +F  AL+ ++       
Sbjct: 175 SKLAERFFSQALSIAP---EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT 231

Query: 404 --DNIDARLTLASLLLEDAKDEEAIS 427
                     L  +  +  K  EA+ 
Sbjct: 232 VDKWEPLLNNLGHVCRKLKKYAEALD 257

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 69.8 bits (171), Expect = 1e-13
 Identities = 14/162 (8%), Positives = 53/162 (32%), Gaps = 4/162 (2%)

Query: 84  KKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAK 143
             ++  ++   L  A  +     Y++A     E+++      +       +    G    
Sbjct: 49  NSEISSKLATELALA--YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKD 106

Query: 144 AMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTW-AMSCLSEAVKADPNDFKLKFHLASL 202
           A+  Y      +  + +    +  +     +     +    + + +       ++     
Sbjct: 107 ALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLS 166

Query: 203 YVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE 244
            +    +++A +  ++++   P + EA K   K+ +   ++ 
Sbjct: 167 KLFTTRYEKARNSLQKVILRFP-STEAQKTLDKILRIEKEVN 207

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 68.6 bits (168), Expect = 3e-13
 Identities = 31/195 (15%), Positives = 65/195 (33%), Gaps = 21/195 (10%)

Query: 94  MLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAAC 153
           ML   S     G+  +A+S   + I L  +    Y+   +  ++  +   +     LA  
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEIS---SKLATELALA 63

Query: 154 YKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAA 213
           YK               +  +   A     E ++  PN+       A + V  G  + A 
Sbjct: 64  YK---------------KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL 108

Query: 214 DVYRQMVQLCPENIEAL-KMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASM 272
            +Y +++QL  +N+ A   +G   Y  + Q +  ++     L                  
Sbjct: 109 RMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQY--ARYRDGLS 166

Query: 273 LVQMNAYDRVLKHIE 287
            +    Y++    ++
Sbjct: 167 KLFTTRYEKARNSLQ 181

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 46.3 bits (110), Expect = 9e-06
 Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 8/125 (6%)

Query: 308 GICHIQLGNTDKAEILLT-AIHWENVSDHAESINEIADLFKNRELYSTALKYY-HMLEAN 365
            + + +  N DKA +     +  +   ++ + +   A++   R     AL+ Y  +L+  
Sbjct: 61  ALAYKKNRNYDKAYLFYKELL--QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE 118

Query: 366 AGVHNDGCLHLKIAECSLALKERE-KSIIYFYKALQILEDNIDARLTLASLLLEDAKDEE 424
           A   ++   ++ +        E+E K +   YK L        AR       L   + E+
Sbjct: 119 A---DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEK 175

Query: 425 AISLL 429
           A + L
Sbjct: 176 ARNSL 180

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 316 NTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYY-HMLEANAGVHNDGCL 374
           N D+ E+       +N    ++   E+A  +K    Y  A  +Y  +L+      N+   
Sbjct: 34  NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA---PNNVDC 90

Query: 375 HLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEA 425
               AE  +   + + ++  + K LQ+  DN+ A + L +     A+ E+ 
Sbjct: 91  LEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKK 141

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 69.2 bits (170), Expect = 4e-13
 Identities = 24/170 (14%), Positives = 54/170 (31%), Gaps = 5/170 (2%)

Query: 89  PEIRRMLGDASLHYALGRYEEAISVLH---EVIRLEEELPNSYHILGLVHDALGNTAKAM 145
           P I         +Y L +Y+ A   +      +   +     +   G +    G  + A+
Sbjct: 37  PYIYNRRAVC--YYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI 94

Query: 146 GCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE 205
             Y  A         ++  I  +   +G+   A+  + + ++    D K+ + L   Y  
Sbjct: 95  QQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY 154

Query: 206 LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLK 255
              + +A   + ++++L P         A+                 Y K
Sbjct: 155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 66.5 bits (163), Expect = 4e-12
 Identities = 34/265 (12%), Positives = 75/265 (28%), Gaps = 33/265 (12%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKA---MGCYWLAACY 154
           A   +    Y EAI V +++   +   P  Y+   + +  L     A   +  Y+     
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA 69

Query: 155 KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAAD 214
            +  S+ ++     L+++G  + A+     AV  D     +   + S +   GNF  A  
Sbjct: 70  TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQ 129

Query: 215 VYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLV 274
              + ++    + +      + Y  + +   +       L+  P           A    
Sbjct: 130 YMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI--GYLWRARANA 187

Query: 275 QMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSD 334
             +   +           YY                       +K   +      +   +
Sbjct: 188 AQDPDTKQGLAKP-----YY-----------------------EKLIEVCAPGGAKYKDE 219

Query: 335 HAESINEIADLFKNRELYSTALKYY 359
             E+   IA  +        A   +
Sbjct: 220 LIEANEYIAYYYTINRDKVKADAAW 244

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 21/156 (13%), Positives = 43/156 (27%), Gaps = 11/156 (7%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
            S  Y  G +  AI  + + IR     P  ++ LG  +       KA   +      K  
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174

Query: 158 DSSLWK---LIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLK--------FHLASLYVEL 206
               +                  A     + ++                  ++A  Y   
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234

Query: 207 GNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ 242
            +  +A   ++ ++ L P N +A+       +    
Sbjct: 235 RDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 33/236 (13%), Positives = 69/236 (29%), Gaps = 47/236 (19%)

Query: 197 FHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKG 256
           F  A    +  N+  A +V+ ++      +       A  Y +  + + +   +E Y   
Sbjct: 7   FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS- 65

Query: 257 HPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGN 316
                    ++                   +  D  YY             G   ++ G 
Sbjct: 66  --------KVN---------------ATKAKSADFEYY-------------GKILMKKGQ 89

Query: 317 TDKAEILLT-AIHWENVSDHAESINEIADLFKNRELYSTALKYYHM-LEANAGVHNDGCL 374
              A      A+  +  +   +   +I   F N+  +  A++Y    +        D  +
Sbjct: 90  DSLAIQQYQAAV--DRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT---TDPKV 144

Query: 375 HLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLA---SLLLEDAKDEEAIS 427
             ++ +     KE  K+   F K L++  +     L  A   +    D K   A  
Sbjct: 145 FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKP 200

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 18/124 (14%), Positives = 31/124 (25%), Gaps = 11/124 (8%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAK---AMGCYWLAACY 154
              +Y    Y +A S   +V+ L+  +   Y      + A     K   A   Y      
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208

Query: 155 KQKDSSLWKLIFPW--------LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL 206
                + +K                  D   A +     +  DP + K    L       
Sbjct: 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268

Query: 207 GNFQ 210
            +  
Sbjct: 269 HHHH 272

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 68.3 bits (168), Expect = 6e-13
 Identities = 28/156 (17%), Positives = 52/156 (33%), Gaps = 4/156 (2%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           A+  Y  G YE AIS L++ +    E+   Y ++      +GN    +G       Y QK
Sbjct: 45  AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK 104

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
             +  +     L +  +    +         +P   +        Y    ++  A   Y 
Sbjct: 105 SLTEHRT-ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYT 163

Query: 218 QMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDY 253
           +M++  PE+       A    K      +   + D 
Sbjct: 164 EMIKRAPEDARGYSNRAAALAKLMSFPEA---IADC 196

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 25/158 (15%), Positives = 52/158 (32%), Gaps = 4/158 (2%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           +     +G     +  L + I   ++   + H    +   L N  K +      A    +
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEYYQKSL-TEHRTADILTKLRNAEKELKKAEAEAYVNPE 137

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
            +   +L       + D   A+   +E +K  P D +   + A+   +L +F  A     
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197

Query: 218 QMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLK 255
           + ++  P  + A    A       +  S+   LE    
Sbjct: 198 KAIEKDPNFVRAYIRKATAQIAVKEYASA---LETLDA 232

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 21/147 (14%), Positives = 47/147 (31%), Gaps = 2/147 (1%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           A +   L   E+ +        +  E      + G  +    +   A+  Y        +
Sbjct: 112 ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE 171

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
           D+  +      L +      A++  ++A++ DPN  +     A+  + +  +  A +   
Sbjct: 172 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231

Query: 218 QMVQLCPENIEALK-MG-AKLYQKSGQ 242
                  E           +LY K+ Q
Sbjct: 232 AARTKDAEVNNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 56.4 bits (137), Expect = 7e-09
 Identities = 22/157 (14%), Positives = 51/157 (32%), Gaps = 9/157 (5%)

Query: 101 HYALGRYEEAISVLHEVIRLEEELPNS--YHILGLVHDALGNTAKAMGCYWLAACYKQKD 158
            Y   +++EAI   ++   L     +    +         G    A+     A    ++ 
Sbjct: 15  FYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM 71

Query: 159 SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQ 218
            + +K+I       G+    +  L + ++            A +  +L N ++       
Sbjct: 72  RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE-HRTADILTKLRNAEKELKKAEA 130

Query: 219 MVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLK 255
              + PE  E  ++  K Y       ++V   + Y +
Sbjct: 131 EAYVNPEKAEEARLEGKEYFTKSDWPNAV---KAYTE 164

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 47.2 bits (113), Expect = 9e-06
 Identities = 33/259 (12%), Positives = 77/259 (29%), Gaps = 47/259 (18%)

Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228
             +      A+   ++A +    D     + A+   E G ++ A       V+   E   
Sbjct: 15  FYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA 73

Query: 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIEL 288
             K+ +K + + G     +  L+  ++ +            A +L ++   ++ LK  E 
Sbjct: 74  DYKVISKSFARIGNAYHKLGDLKKTIEYYQ---KSLTEHRTADILTKLRNAEKELKKAE- 129

Query: 289 VDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKN 348
                           +                            + AE        +  
Sbjct: 130 ------------AEAYVN--------------------------PEKAEEARLEGKEYFT 151

Query: 349 RELYSTALKYY-HMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNID 407
           +  +  A+K Y  M++       D   +   A     L    ++I    KA++   + + 
Sbjct: 152 KSDWPNAVKAYTEMIKRAP---EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 208

Query: 408 ARLTLASLLLEDAKDEEAI 426
           A +  A+  +   +   A+
Sbjct: 209 AYIRKATAQIAVKEYASAL 227

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 66.1 bits (162), Expect = 9e-12
 Identities = 61/362 (16%), Positives = 105/362 (29%), Gaps = 77/362 (21%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEE----LPNSYHILGLVHDALGNTAKAMGCYWLAAC 153
                  G     +S     +++  E    L   Y  LG  +  L + AKA+  +     
Sbjct: 12  GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYH----- 66

Query: 154 YKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAA 213
               D +L + I       GD                       +L +    LGNF  A 
Sbjct: 67  --HHDLTLARTI-------GDQLGEAKASG--------------NLGNTLKVLGNFDEAI 103

Query: 214 DVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASML 273
              ++           L +  +L  K G+  +  ++   Y     +    G  D      
Sbjct: 104 VCCQR----------HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPE 153

Query: 274 VQMNAYDRVLKHIELVDLVYYSGKELLLALKIKA-----------GICHIQLGNTDKAEI 322
              NA    +   E         + L L   +             G  H  LGN   A I
Sbjct: 154 DVRNALQAAVDLYE---------ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204

Query: 323 LLT---AIHWE--NVSDHAESINEIADLFKNRELYSTALKYYH----MLEANAGVHNDGC 373
                  I  E  + +    + + + + +     + TA +YY     +         +  
Sbjct: 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264

Query: 374 LHLKIAECSLALKEREKSIIYFYKALQI---LEDNIDARLTLASL--LLEDAKD-EEAIS 427
               +      L++ EK+I Y  K L I   L+D I       SL        + ++A+ 
Sbjct: 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324

Query: 428 LL 429
             
Sbjct: 325 FA 326

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 57.3 bits (139), Expect = 8e-09
 Identities = 46/334 (13%), Positives = 102/334 (30%), Gaps = 75/334 (22%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPN------SYHILGLVHDALGNTAKAMGCYWLA 151
            + ++ L  Y +A+   H  + L   + +      +   LG     LGN  +A+ C    
Sbjct: 50  GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCC--- 106

Query: 152 ACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQR 211
               Q+   + +       E  D       L               +L ++Y   G    
Sbjct: 107 ----QRHLDISR-------ELNDKVGEARALY--------------NLGNVYHAKGKSFG 141

Query: 212 AADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLAS 271
                    +   +   AL+    LY+++  + ++       L     +        L +
Sbjct: 142 CPGPQ-DTGEFPEDVRNALQAAVDLYEENLSLVTA-------LGDRAAQGR--AFGNLGN 191

Query: 272 MLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKA-----------GICHIQLGNTDKA 320
               +  +   +   E         + LL+A +              G  +I LG  + A
Sbjct: 192 THYLLGNFRDAVIAHE---------QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242

Query: 321 EILLT---AIHWENVSDH---AESINEIADLFKNRELYSTALKYY----HMLEANAGVHN 370
                    +    + D    A+S   + + +   + Y  A+ Y+     + +       
Sbjct: 243 SEYYKKTLLL-ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG 301

Query: 371 DGCLHLKIAECSLALKEREKSIIYFYKALQILED 404
           +G     +     AL   ++++ +  K L+I  +
Sbjct: 302 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 27/173 (15%), Positives = 54/173 (31%), Gaps = 55/173 (31%)

Query: 90  EIRRMLGD-----------ASLHYALGRYEEAISVLHEVIRLEEELPN------SYHILG 132
            +   LGD            + HY LG + +A+    + + + +E  +      +Y  LG
Sbjct: 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 230

Query: 133 LVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND 192
             +  LG    A   Y       +K   L + +        D                  
Sbjct: 231 NAYIFLGEFETASEYY-------KKTLLLARQL-------KDRAVEAQSCY--------- 267

Query: 193 FKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIES 245
                 L + Y  L ++++A D + +           L +  +L  + G+  +
Sbjct: 268 -----SLGNTYTLLQDYEKAIDYHLK----------HLAIAQELKDRIGEGRA 305

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 62.6 bits (152), Expect = 9e-12
 Identities = 18/148 (12%), Positives = 40/148 (27%)

Query: 105 GRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKL 164
           G        +  +  +  +     + L       G    A   +         DS  +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 165 IFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCP 224
           +       G    A+   S     D  + +  FH A   ++ G    A        +L  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 225 ENIEALKMGAKLYQKSGQIESSVDILED 252
              E  ++  ++      I+   ++  +
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKEMKHE 148

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 65.1 bits (158), Expect = 1e-11
 Identities = 37/273 (13%), Positives = 82/273 (30%), Gaps = 25/273 (9%)

Query: 181 CLSEAVKADP----NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKL 236
           C++EA +  P     D +    L   Y+    +    D  +         ++A++M A+ 
Sbjct: 18  CINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEY 74

Query: 237 YQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSG 296
                + ++ V  L+  +       +   + + AS+       D  L+ +          
Sbjct: 75  LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH--------- 125

Query: 297 KELLLALKIKAGICHIQLGNTDKAE-ILLTAIHWENVSDHAESINEIADLFKNRELYSTA 355
           +   L          ++L   D A   L      +  +   +       L    E    A
Sbjct: 126 QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDA 185

Query: 356 LKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASL 415
              +  +           L    A C +A    E +     +AL     + +  + L  L
Sbjct: 186 YYIFQEMADKCS--PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVL 243

Query: 416 LLEDAKDEEAISLLTPPMSLENKYVNSDKTHAW 448
                K  E  +         ++  ++ ++H +
Sbjct: 244 SQHLGKPPEVTN------RYLSQLKDAHRSHPF 270

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 53.6 bits (128), Expect = 9e-08
 Identities = 32/267 (11%), Positives = 75/267 (28%), Gaps = 15/267 (5%)

Query: 101 HYALGRYEEAISVLHEVIRLEEELPNSYHIL-GLVHDALGNTAKAMGCYWLAACYKQKDS 159
            + +G Y++ I+    V     E      +     + A       +     ++     + 
Sbjct: 9   AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSA---PEL 65

Query: 160 SLWKLIFPWLIEQGDTTWAMSCLSEAV--KADPNDFKLKFHLASLYVELGNFQRAADVYR 217
              ++   +L         ++ L   +    D  +       AS+Y    N   A     
Sbjct: 66  QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 125

Query: 218 QMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMN 277
           Q      +++E + M  ++  K  +++ +   L+             +     S+     
Sbjct: 126 Q-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE 180

Query: 278 AYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAE 337
                    + +         LL         CH+  G  + AE +L     ++      
Sbjct: 181 KLQDAYYIFQEMADKCSPTLLLLNGQ----AACHMAQGRWEAAEGVLQEALDKDSGHPET 236

Query: 338 SINEIADLFKNRELYSTALKYYHMLEA 364
            IN +       +      +Y   L+ 
Sbjct: 237 LINLVVLSQHLGKPPEVTNRYLSQLKD 263

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 50.9 bits (121), Expect = 7e-07
 Identities = 24/163 (14%), Positives = 46/163 (28%), Gaps = 7/163 (4%)

Query: 95  LGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACY 154
           L  AS+++     + A+  LH+   L         +   +   L     A          
Sbjct: 105 LMAASIYFYDQNPDAALRTLHQGDSL-----ECMAMTVQILLKLDRLDLARKELKKMQDQ 159

Query: 155 KQKDSSLWKLIFPWLIEQGDTTW--AMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRA 212
            +  +          +  G      A     E          L    A+ ++  G ++ A
Sbjct: 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAA 219

Query: 213 ADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLK 255
             V ++ +     + E L     L Q  G+     +     LK
Sbjct: 220 EGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 44/330 (13%), Positives = 104/330 (31%), Gaps = 76/330 (23%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPN------SYHILGLVHDALGNTAKAMGCYWLA 151
            + ++ LG Y +A+      + L + + +      S   LG     +G   +A  C    
Sbjct: 93  GNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICC--- 149

Query: 152 ACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQR 211
               ++  +L +       + GD       L               +L ++Y   G    
Sbjct: 150 ----ERHLTLAR-------QLGDRLSEGRALY--------------NLGNVYHAKGKHLG 184

Query: 212 AADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLAS 271
             +  +    +      A++     YQ++ ++          L     +        L +
Sbjct: 185 QRNPGKFGDDVKEALTRAVEF----YQENLKLMRD-------LGDRGAQGR--ACGNLGN 231

Query: 272 MLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKA-----------GICHIQLGNTDKA 320
               +  +   ++H +         + L +A +              G  HI LG  + A
Sbjct: 232 TYYLLGDFQAAIEHHQ---------ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282

Query: 321 EILLT---AIHWE--NVSDHAESINEIADLFKNRELYSTALKYYH----MLEANAGVHND 371
                   A+  E       A+S   + + +     ++TA++Y++    + +       +
Sbjct: 283 AEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 342

Query: 372 GCLHLKIAECSLALKEREKSIIYFYKALQI 401
                 +     A+   E+++ Y  + LQ+
Sbjct: 343 ARACWSLGNAHSAIGGHERALKYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 63.9 bits (156), Expect = 7e-11
 Identities = 52/401 (12%), Positives = 102/401 (25%), Gaps = 95/401 (23%)

Query: 65  REASKKYPSLKKRGRPEGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEE- 123
              +  +    ++G        +C E+             G     ++     I+   E 
Sbjct: 25  GGGTNSHDGNSQQGSGSDGGSSMCLELALE---GERLCNAGDCRAGVAFFQAAIQAGTED 81

Query: 124 ---LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMS 180
              L   Y  LG  +  LG+  KAM  +       + D +L K +        D      
Sbjct: 82  LRTLSAIYSQLGNAYFYLGDYNKAMQYH-------KHDLTLAKSM-------NDRLGEAK 127

Query: 181 CLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS 240
                            +L +    +G F  AA    +           L +  +L  + 
Sbjct: 128 SSG--------------NLGNTLKVMGRFDEAAICCER----------HLTLARQLGDRL 163

Query: 241 GQIESSVDI------LEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYY 294
            +  +  ++         +L            +          A  R ++  +       
Sbjct: 164 SEGRALYNLGNVYHAKGKHLGQ---------RNPGKFGDDVKEALTRAVEFYQ------- 207

Query: 295 SGKELLLALKIKA-----------GICHIQLGNTDKAEILLT---AIHWE--NVSDHAES 338
             + L L   +             G  +  LG+   A         I  E  + +    +
Sbjct: 208 --ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRA 265

Query: 339 INEIADLFKNRELYSTALKYYH----MLEANAGVHNDGCLHLKIAECSLALKEREKSIIY 394
            + + +       +  A ++Y     +         +      +      L E   +I Y
Sbjct: 266 NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEY 325

Query: 395 FYKALQI---LEDNIDARLTLASL--LLEDAKD-EEAISLL 429
             + L I   L D I       SL          E A+   
Sbjct: 326 HNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 47/147 (31%)

Query: 90  EIRRMLGD-----------ASLHYALGRYEEAISVLHEVIRLEEELPN------SYHILG 132
            I R  GD            + H  LG++E+A       + L  EL        S + LG
Sbjct: 251 RIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLG 310

Query: 133 LVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTW-AMSCLSEAVKADPN 191
             +  L     A+  +        +  ++ + +       GD    A +C S        
Sbjct: 311 NTYTLLHEFNTAIEYH-------NRHLAIAQEL-------GDRIGEARACWS-------- 348

Query: 192 DFKLKFHLASLYVELGNFQRAADVYRQ 218
                  L + +  +G  +RA     Q
Sbjct: 349 -------LGNAHSAIGGHERALKYAEQ 368

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 63/379 (16%), Positives = 110/379 (29%), Gaps = 80/379 (21%)

Query: 81  EGSKKKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEE----LPNSYHILGLVHD 136
            GS +  C E+             G     +S     +++  E    L   Y  LG  + 
Sbjct: 2   PGSMEASCLELALE---GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF 58

Query: 137 ALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLK 196
            L + AKA+  +         D +L +         GD                      
Sbjct: 59  YLHDYAKALEYH-------HHDLTLAR-------TIGDQLGEAKASG------------- 91

Query: 197 FHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKG 256
            +L +    LGNF  A    ++           L +  +L  K G+  +  ++   Y   
Sbjct: 92  -NLGNTLKVLGNFDEAIVCCQR----------HLDISRELNDKVGEARALYNLGNVYHAK 140

Query: 257 HPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKA--------- 307
             +    G  D+        +A    +   E         + L L   +           
Sbjct: 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYE---------ENLSLVTALGDRAAQGRAFG 191

Query: 308 --GICHIQLGNTDKAEILLT---AIHWE--NVSDHAESINEIADLFKNRELYSTALKYYH 360
             G  H  LGN   A I       I  E  + +    + + + + +     + TA +YY 
Sbjct: 192 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251

Query: 361 ----MLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQI---LEDNIDARLTLA 413
               +         +      +      L++ EK+I Y  K L I   L D I       
Sbjct: 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACW 311

Query: 414 SL--LLEDAKD-EEAISLL 429
           SL        + ++A+   
Sbjct: 312 SLGNAYTALGNHDQAMHFA 330

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 54.2 bits (131), Expect = 7e-08
 Identities = 46/334 (13%), Positives = 104/334 (31%), Gaps = 75/334 (22%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPN------SYHILGLVHDALGNTAKAMGCYWLA 151
            + ++ L  Y +A+   H  + L   + +      +   LG     LGN  +A+ C    
Sbjct: 54  GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCC--- 110

Query: 152 ACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQR 211
               Q+   + +       E  D       L               +L ++Y   G    
Sbjct: 111 ----QRHLDISR-------ELNDKVGEARALY--------------NLGNVYHAKGKSFG 145

Query: 212 AADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLAS 271
                + + +   E  +AL+     Y+++  + ++       L     +        L +
Sbjct: 146 CPG-PQDVGEFPEEVRDALQAAVDFYEENLSLVTA-------LGDRAAQGR--AFGNLGN 195

Query: 272 MLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKA-----------GICHIQLGNTDKA 320
               +  +   +   E         + LL+A +              G  +I LG  + A
Sbjct: 196 THYLLGNFRDAVIAHE---------QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246

Query: 321 EILLT---AIHWENVSDH---AESINEIADLFKNRELYSTALKYYH----MLEANAGVHN 370
                    +    + D    A+S   + + +   + Y  A+ Y+     + +       
Sbjct: 247 SEYYKKTLLL-ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG 305

Query: 371 DGCLHLKIAECSLALKEREKSIIYFYKALQILED 404
           +G     +     AL   ++++ +  K L+I  +
Sbjct: 306 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 51/383 (13%), Positives = 110/383 (28%), Gaps = 113/383 (29%)

Query: 90  EIRRMLGD-----------ASLHYALGRYEEAISVLHEVIRLEEELPN------SYHILG 132
            + R +GD            +    LG ++EAI      + +  EL +      + + LG
Sbjct: 75  TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLG 134

Query: 133 LVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND 192
            V+ A G +    G   +    ++   +L                A+    E +      
Sbjct: 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQA--------------AVDFYEENLSLVT-- 178

Query: 193 FKLKFH---------LASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQI 243
             L            L + +  LGNF+ A   + Q           L +  +   K+ + 
Sbjct: 179 -ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ----------RLLIAKEFGDKAAER 227

Query: 244 ESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLAL 303
            +                       L +  + +  ++   ++ +         K LLLA 
Sbjct: 228 RA--------YSN------------LGNAYIFLGEFETASEYYK---------KTLLLAR 258

Query: 304 KIKA-----------GICHIQLGNTDKAEILLT---AIHWENVSDH---AESINEIADLF 346
           ++K            G  +  L + +KA        AI  + ++D      +   + + +
Sbjct: 259 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-AQELNDRIGEGRACWSLGNAY 317

Query: 347 KNRELYSTALKYY------------HMLEANAGVHNDGCLHLKIAECSLALKEREKSIIY 394
                +  A+ +                E  A   N   L + +                
Sbjct: 318 TALGNHDQAMHFAEKHLEISREVGDKSGELTA-RLNLSDLQMVLGLSYSTNNSIMSENTE 376

Query: 395 FYKALQILEDNIDARLTLASLLL 417
              +L  +   +  R ++ ++ L
Sbjct: 377 IDSSLNGVRPKLGRRHSMENMEL 399

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 33/172 (19%), Positives = 57/172 (33%), Gaps = 19/172 (11%)

Query: 89  PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCY 148
            E  R LG         +   AI  L+    L+ +    +  L + H    N   A+   
Sbjct: 55  EEAWRSLGLT--QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASL 112

Query: 149 --WLA-------ACYKQKDSSLWKLIFPW------LIEQGDTTWAMSCLSEAVKADPNDF 193
             WL               + +                  +     + L  A++ +PND 
Sbjct: 113 RAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA 172

Query: 194 KLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEAL-KMGAKLYQKSGQIE 244
           +L   L  LY    N+  AA   R+ V+L P++ +   K+GA       + +
Sbjct: 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGA-TLANGNRPQ 223

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 35/290 (12%), Positives = 76/290 (26%), Gaps = 32/290 (11%)

Query: 139 GNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFH 198
           G+  +    Y   A                +++  +   A        +A P   +    
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 199 LASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHP 258
           L     E      A         L P++I      A  +       +++  L  +L   P
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

Query: 259 TEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTD 318
                                   L+    +D +    ++   A                
Sbjct: 121 QYEQ---------------LGSVNLQADVDIDDLNVQSEDFFFA----------APNEYR 155

Query: 319 KAEILLT-AIHWENVSDHAESINEIADLFKNRELYSTALKYYHM-LEANAGVHNDGCLHL 376
           +   LL  A+      + A+    +  L+     Y +A       +E      +D  L  
Sbjct: 156 ECRTLLHAALEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP---DDAQLWN 210

Query: 377 KIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAI 426
           K+          ++++  + +AL I    +     +A      ++ + A 
Sbjct: 211 KLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA 260

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 22/139 (15%), Positives = 51/139 (36%)

Query: 102 YALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSL 161
            A   Y E  ++LH  + +       +  LG++++   N   A      A   +  D+ L
Sbjct: 149 AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208

Query: 162 WKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQ 221
           W  +   L        A+   + A+  +P   ++ +++A  Y  +  +  AA    + + 
Sbjct: 209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268

Query: 222 LCPENIEALKMGAKLYQKS 240
           +           ++   +S
Sbjct: 269 MQVGGTTPTGEASREATRS 287

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 22/164 (13%), Positives = 47/164 (28%), Gaps = 17/164 (10%)

Query: 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSS 160
              L    EA      V +   E   ++  LGL          A+     A     KD +
Sbjct: 31  MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 90

Query: 161 LWKLIFPWLIEQGDTTWAMSCLSEAVKADPN---------------DFKLKFHLASLYVE 205
           +   +      + +   A++ L   + + P                D          +  
Sbjct: 91  VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA 150

Query: 206 LGNFQRAADVYRQMVQLCPENIEA-LKMGAKLYQKSGQIESSVD 248
              ++    +    +++ P + +    +G  LY  S   +S+  
Sbjct: 151 PNEYRECRTLLHAALEMNPNDAQLHASLGV-LYNLSNNYDSAAA 193

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 61.0 bits (148), Expect = 3e-11
 Identities = 19/135 (14%), Positives = 46/135 (34%), Gaps = 2/135 (1%)

Query: 103 ALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLW 162
           A+     + + L ++  + +++ +  +         G   +A   +     Y   +    
Sbjct: 14  AVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYI 73

Query: 163 KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL 222
             +      +     A    + A     ND+   FH     + L    +A + +  ++Q 
Sbjct: 74  MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133

Query: 223 CPENIEALKMGAKLY 237
             +  E LK+ A+ Y
Sbjct: 134 SND--EKLKIKAQSY 146

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 15/94 (15%), Positives = 29/94 (30%)

Query: 168 WLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI 227
               +G    A          D  +      LA++Y     FQ+AAD+Y     L   + 
Sbjct: 45  DFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104

Query: 228 EALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA 261
             +    +   +      + +  E  ++    E 
Sbjct: 105 TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 18/129 (13%), Positives = 44/129 (34%), Gaps = 8/129 (6%)

Query: 182 LSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSG 241
           L +      +     +  A  +   G  + A   +R +      N++ +   A +YQ   
Sbjct: 25  LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84

Query: 242 QIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELV------DLVYYS 295
           Q + + D+            D+  +       +++ A  +  +  ELV      + +   
Sbjct: 85  QFQQAADLYAVAFALGKN--DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIK 142

Query: 296 GKELLLALK 304
            +  L A++
Sbjct: 143 AQSYLDAIQ 151

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 11/97 (11%), Positives = 29/97 (29%), Gaps = 2/97 (2%)

Query: 333 SDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSI 392
            D  + I   A  F N+     A  ++  L        +    + +A      ++ +++ 
Sbjct: 33  DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAA 90

Query: 393 IYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLL 429
             +  A  + +++           L      +A    
Sbjct: 91  DLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECF 127

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 7/144 (4%)

Query: 205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFG 264
            + +   +    + +  +  + ++ +   A  +   G+IE +               D+ 
Sbjct: 14  AVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY- 72

Query: 265 VIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKA-EIL 323
            I  LA++      +    +  +L  + +  GK     +    G C ++L    KA E  
Sbjct: 73  -IMGLAAIYQIKEQFQ---QAADLYAVAFALGKNDYTPV-FHTGQCQLRLKAPLKAKECF 127

Query: 324 LTAIHWENVSDHAESINEIADLFK 347
              I   N            D  +
Sbjct: 128 ELVIQHSNDEKLKIKAQSYLDAIQ 151

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 9/55 (16%), Positives = 21/55 (38%)

Query: 94  MLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCY 148
           ++G A+++    ++++A  +      L +         G     L    KA  C+
Sbjct: 73  IMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECF 127

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 21/182 (11%), Positives = 51/182 (28%), Gaps = 42/182 (23%)

Query: 102 YALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLA---------- 151
              G  E+A   L + + ++    +++  L +V         A   Y  A          
Sbjct: 48  LQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARV 107

Query: 152 ------------------ACYKQKDSSLWKLIFPW-----------LIEQGDTTWAMSCL 182
                                 +   +    ++P             ++      A    
Sbjct: 108 LNNYGGFLYEQKRYEEAYQRLLE---ASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF 164

Query: 183 SEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ 242
            ++++ + N   +   +A L  +   +  A   Y    Q   +N  +L +G +L +    
Sbjct: 165 EKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFED 224

Query: 243 IE 244
            +
Sbjct: 225 RD 226

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 39/256 (15%), Positives = 90/256 (35%), Gaps = 30/256 (11%)

Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228
           L+ +G          +  K           L   Y++ GN ++A    R+ +++ P + +
Sbjct: 14  LVPRGSHM-GDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSAD 72

Query: 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRVLK 284
           A    A ++Q   + + + +     L      A     +G        L +   Y+   +
Sbjct: 73  AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF------LYEQKRYEEAYQ 126

Query: 285 HIE--LVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLT-AIHWENVSDHAESINE 341
            +     D +Y     +   L    G+  +Q+    +A+     ++      +      E
Sbjct: 127 RLLEASQDTLYPERSRVFENL----GLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALE 180

Query: 342 IADLFKNRELYSTALKYY----HMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYK 397
           +ADL      Y  A +YY         NA       L +++A+     ++R+ +  Y  +
Sbjct: 181 MADLLYKEREYVPARQYYDLFAQGGGQNARSLL---LGIRLAK---VFEDRDTAASYGLQ 234

Query: 398 ALQILEDNIDARLTLA 413
             ++   +++ +   A
Sbjct: 235 LKRLYPGSLEYQEFQA 250

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 2/133 (1%)

Query: 102 YALGRYEEAISVLHEVIR--LEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS 159
           Y   RYEEA   L E  +  L  E    +  LGLV   +   A+A   +  +    +   
Sbjct: 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP 175

Query: 160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQM 219
           S+   +   L ++ +   A        +    + +       L     +   AA    Q+
Sbjct: 176 SVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235

Query: 220 VQLCPENIEALKM 232
            +L P ++E  + 
Sbjct: 236 KRLYPGSLEYQEF 248

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 37/266 (13%), Positives = 71/266 (26%), Gaps = 87/266 (32%)

Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228
            +++G+T  A   L +A++ DP+       LA ++      + A + YR+ +     N  
Sbjct: 47  YLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR 106

Query: 229 ALK-MGAKLYQKSGQIESSVDI----LEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVL 283
            L   G  LY++  + E +        +D L    +                        
Sbjct: 107 VLNNYGGFLYEQ-KRYEEAYQRLLEASQDTLYPERSRV---------------------- 143

Query: 284 KHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLT-AIHWENVSDHAESINEI 342
                    + +            G+  +Q+    +A+     ++      +      E+
Sbjct: 144 ---------FEN-----------LGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEM 181

Query: 343 ADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL 402
           ADL      Y  A +YY                                        Q  
Sbjct: 182 ADLLYKEREYVPARQYYD------------------------------------LFAQGG 205

Query: 403 EDNIDARLTLASLLLEDAKDEEAISL 428
             N  + L    L       + A S 
Sbjct: 206 GQNARSLLLGIRLAKVFEDRDTAASY 231

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 25/156 (16%), Positives = 52/156 (33%), Gaps = 16/156 (10%)

Query: 308 GICHIQLGNTDKAEI-LLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANA 366
            +          A+     A+   + S +A  +N        ++ Y  A +    LEA+ 
Sbjct: 78  AVVFQTEMEPKLADEEYRKAL--ASDSRNARVLNNYGGFLYEQKRYEEAYQRL--LEASQ 133

Query: 367 GVHNDGCL--HLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEE 424
                        +   SL +K+  ++  YF K+L++  +     L +A LL ++ +   
Sbjct: 134 DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193

Query: 425 AISLLTPPMSLENKY--VNSDKTHAWWLNIRIKIKL 458
           A           + +         +  L IR+    
Sbjct: 194 ARQYY-------DLFAQGGGQNARSLLLGIRLAKVF 222

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 40/243 (16%), Positives = 76/243 (31%), Gaps = 46/243 (18%)

Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228
            +   D   A + + +A+K+DP +       A +Y  L    +A + +RQ + + P++ E
Sbjct: 18  YMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE 77

Query: 229 ALK-MGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIE 287
                G  L  +  +                 E+              M  +D+ L    
Sbjct: 78  INNNYGWFLCGRLNRPA---------------ES--------------MAYFDKALA--- 105

Query: 288 LVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLT-AIHWENVSDHAESINEIADLF 346
             D  Y +     L      GIC  + G    AE  L  ++          +  E+A   
Sbjct: 106 --DPTYPTPYIANLNK----GICSAKQGQFGLAEAYLKRSL--AAQPQFPPAFKELARTK 157

Query: 347 KNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNI 406
                   A  Y+   ++   V     L L     + AL   + +   +    Q+  +  
Sbjct: 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKI-AKALGNAQAA---YEYEAQLQANFP 213

Query: 407 DAR 409
            + 
Sbjct: 214 YSE 216

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 24/195 (12%), Positives = 58/195 (29%), Gaps = 40/195 (20%)

Query: 90  EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYW 149
            I+  L     +     Y +A + + + ++ + +   ++ +   ++  L    KA   + 
Sbjct: 9   NIKTQLAME--YMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR 66

Query: 150 LAACYKQKDSSLW--------------------------KLIFPW-----------LIEQ 172
            A   K   + +                              +P              +Q
Sbjct: 67  QALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ 126

Query: 173 GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE-NIEALK 231
           G    A + L  ++ A P        LA   +  G    A   +++          + L 
Sbjct: 127 GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLL 186

Query: 232 MGAKLYQKSGQIESS 246
           +G K+ +  G  +++
Sbjct: 187 LGWKIAKALGNAQAA 201

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 59.5 bits (145), Expect = 5e-10
 Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 3/158 (1%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           A+L  ++   E A++   + + L+     +Y+  G V+       +A   +  A     +
Sbjct: 64  ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME 123

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
           +  L+ ++   L++      A+  L  AV+ + ND + +F         G    A   + 
Sbjct: 124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA 183

Query: 218 QMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLK 255
            + +  P + +A       Y      E +   LE   K
Sbjct: 184 AVTEQDPGHADAFYNAGVTYAYKENREKA---LEMLDK 218

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 55.6 bits (135), Expect = 1e-08
 Identities = 25/141 (17%), Positives = 52/141 (36%)

Query: 102 YALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSL 161
                Y+EA  +  + +R   E  + +++LG V   L     A+     A    + D+  
Sbjct: 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161

Query: 162 WKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQ 221
                  L  +G    A+S  +   + DP      ++    Y    N ++A ++  + + 
Sbjct: 162 RFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221

Query: 222 LCPENIEALKMGAKLYQKSGQ 242
           + P+++ AL     L      
Sbjct: 222 IQPDHMLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 2/143 (1%)

Query: 89  PEIRRMLGDA--SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMG 146
             +  M G          G YE+A     + I   +E    Y     +  ++    +A+ 
Sbjct: 19  SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALA 78

Query: 147 CYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL 206
            Y  A       ++ +       + +     A     +A++A   +  L + L ++ V+L
Sbjct: 79  FYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL 138

Query: 207 GNFQRAADVYRQMVQLCPENIEA 229
              + A    ++ V+L   + EA
Sbjct: 139 EQPKLALPYLQRAVELNENDTEA 161

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 51.0 bits (123), Expect = 4e-07
 Identities = 19/156 (12%), Positives = 55/156 (35%), Gaps = 6/156 (3%)

Query: 100 LHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS 159
           +  +   +  +  ++     +      +           G+  KA   +  A    ++D+
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMA---SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA 57

Query: 160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQM 219
             +      L    +   A++   +A++ D +     +   ++YV    ++ A D++ + 
Sbjct: 58  IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA 117

Query: 220 VQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLK 255
           ++   EN +   M   +  K  Q + +   L    +
Sbjct: 118 LRAGMENGDLFYMLGTVLVKLEQPKLA---LPYLQR 150

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 27/169 (15%), Positives = 49/169 (28%), Gaps = 16/169 (9%)

Query: 89  PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCY 148
            E  + LG           + AI  L   + L+     +   L + +    +   A    
Sbjct: 99  AEAWQFLGIT--QAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEAL 156

Query: 149 --WL------AACYKQKDSSLWKL--IFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFH 198
             W+          K K  S      +    ++            EA   + +       
Sbjct: 157 KNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216

Query: 199 --LASLYVELGNFQRAADVYRQMVQLCPENIEAL-KMGAKLYQKSGQIE 244
             L  L+   G F RA D +   + + PE+     ++GA       + E
Sbjct: 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGA-TLANGDRSE 264

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 48/335 (14%), Positives = 103/335 (30%), Gaps = 43/335 (12%)

Query: 103 ALGRYEEAISVLHEVIRLEEELPNSYH--------ILGLVHDALGNTAKAMGCYWLAACY 154
               +E A + +       +++   +                     + +   Y+     
Sbjct: 1   GAMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTEN 60

Query: 155 KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAAD 214
             KD           +++GD    +  +  A+  DP D +    L     E  N Q A  
Sbjct: 61  PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIV 120

Query: 215 VYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLV 274
             ++ ++L P N++AL   A  Y  +   + + + L++++K +P                
Sbjct: 121 ALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYL----------- 169

Query: 275 QMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKA-EILLTAIHWENVS 333
                                 K+    L  +     +     +   E+ L A H     
Sbjct: 170 -------------------VKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM 210

Query: 334 DHAESINEIADLFKNRELYSTALKYYHM-LEANAGVHNDGCLHLKIAECSLALKEREKSI 392
              +    +  LF     ++ A+  ++  L        D  L  ++          E+++
Sbjct: 211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP---EDYSLWNRLGATLANGDRSEEAV 267

Query: 393 IYFYKALQILEDNIDARLTLASLLLEDAKDEEAIS 427
             + +AL+I    I +R  L    +      EA+S
Sbjct: 268 EAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 11/165 (6%)

Query: 102 YALGRYEEAISVLHEVIRLEEELPNSYHI----LGLVHDALGNTAKAMGCYWLAACYKQK 157
               + +  +S   +      E P          GL     G+    +     A      
Sbjct: 38  NQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG 97

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
           D+  W+ +     E  +   A+  L   ++  PN+ K    LA  Y    + Q A +  +
Sbjct: 98  DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALK 157

Query: 218 QMVQLCPENIEALKMGAKLYQKSGQIESSV-------DILEDYLK 255
             ++  P+    +K        + ++  S         + E YL+
Sbjct: 158 NWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE 202

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 34/141 (24%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
               Y  G++++A  +   +  L+      +  LG    +LG   +A+  Y         
Sbjct: 25  GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSY--------- 75

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
                                    S     D N+ +  FH A  +++LG+   A   + 
Sbjct: 76  -------------------------SYGALMDINEPRFPFHAAECHLQLGDLDGAESGFY 110

Query: 218 QMVQLCPENIEALKMGAKLYQ 238
               L         + A+   
Sbjct: 111 SARALAAAQPAHEALAARAGA 131

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 12/106 (11%), Positives = 28/106 (26%)

Query: 168 WLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI 227
              + G    A          D  D +    L +    LG +++A   Y     +     
Sbjct: 27  NQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP 86

Query: 228 EALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASML 273
                 A+ + + G ++ +             +     +   A  +
Sbjct: 87  RFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 8/67 (11%), Positives = 21/67 (31%)

Query: 182 LSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSG 241
           L+       +  +  + L     + G +  A  +++ +  L   +           Q  G
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 242 QIESSVD 248
             E ++ 
Sbjct: 67  LYEQALQ 73

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 54.0 bits (130), Expect = 5e-09
 Identities = 12/94 (12%), Positives = 26/94 (27%)

Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228
           +++  +   A        + +P   +    L     E      A         L P++I 
Sbjct: 27  MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 86

Query: 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262
                A  +       +++  L  +L   P    
Sbjct: 87  VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 50.5 bits (121), Expect = 8e-08
 Identities = 20/126 (15%), Positives = 28/126 (22%), Gaps = 34/126 (26%)

Query: 100 LHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS 159
               L    EA      V + E E   ++  LGL          A+              
Sbjct: 26  SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN---------- 75

Query: 160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQM 219
                                    A   DP D  +   LA  +    N   A    R  
Sbjct: 76  ------------------------HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 111

Query: 220 VQLCPE 225
           +   P+
Sbjct: 112 LLSQPQ 117

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 8/133 (6%)

Query: 102 YALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSL 161
           Y  GR + A   L    + +   P     L L    L           L   +++ D   
Sbjct: 122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEV---LKQHFEKSDKEQ 178

Query: 162 WKLIFPW-----LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVY 216
           W           + EQ       +  ++      +  +  F+L   Y+ LG+   A  ++
Sbjct: 179 WGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238

Query: 217 RQMVQLCPENIEA 229
           +  V     N   
Sbjct: 239 KLAVANNVHNFVE 251

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 28/233 (12%), Positives = 74/233 (31%), Gaps = 26/233 (11%)

Query: 102 YALGRYEEAISVLHEVIR----LEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
               + E  ++ + +++      ++E     +  G+++D+LG  A A   +  A   +  
Sbjct: 16  QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD 75

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
              ++  +  +L + G+   A       ++ DP       +        G  + A D   
Sbjct: 76  MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 135

Query: 218 QMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMN 277
              Q  P +           QK  + ++   + + + K    +  + +++     + +  
Sbjct: 136 AFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQT 195

Query: 278 AYDRVLKHIELVDLVYYSGKELLLALKIKA---------GICHIQLGNTDKAE 321
             +R+                      +           G  ++ LG+ D A 
Sbjct: 196 LMERLKADAT-------------DNTSLAEHLSETNFYLGKYYLSLGDLDSAT 235

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 7/133 (5%)

Query: 100 LHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS 159
           L+ +LG    A +   + + +  ++P  ++ LG+     GN   A   +          +
Sbjct: 52  LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 111

Query: 160 SLWK---LIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVY 216
                  +    L   G    A   L    + DPND      L     +L   ++A +V 
Sbjct: 112 YAHLNRGIA---LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE-KQAKEVL 167

Query: 217 RQMVQLCPENIEA 229
           +Q  +   +    
Sbjct: 168 KQHFEKSDKEQWG 180

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 31/159 (19%), Positives = 62/159 (38%), Gaps = 9/159 (5%)

Query: 100 LHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS 159
            H   GRY +A+ +L +V   +    +    LG+ +   G   +       +      + 
Sbjct: 17  SHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV 76

Query: 160 SLWK---LIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVY 216
            +     L     ++      A+  L +  +A+P +F ++F L      LG F  A D +
Sbjct: 77  KVATVLGLT---YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF 133

Query: 217 RQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLK 255
           +  + L P   +  +  A  Y++ G+ E +   L  + K
Sbjct: 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEA---LPHFKK 169

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 52.8 bits (128), Expect = 5e-08
 Identities = 20/129 (15%), Positives = 44/129 (34%)

Query: 102 YALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSL 161
              G  +    +L   +    +      +LGL +  +     A+      A     + ++
Sbjct: 53  VKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112

Query: 162 WKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQ 221
              +   L   G    A+     A+   PN+ K+   +A  Y ++G  + A   +++  +
Sbjct: 113 RFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172

Query: 222 LCPENIEAL 230
           L       L
Sbjct: 173 LDEGASVEL 181

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.5 bits (96), Expect = 7e-04
 Identities = 16/102 (15%), Positives = 36/102 (35%)

Query: 128 YHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVK 187
           Y   G+ H   G  ++A+            D  +   +    ++ G        L  ++ 
Sbjct: 11  YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70

Query: 188 ADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA 229
             P++ K+   L   YV++  +  A  +  ++ +  P N   
Sbjct: 71  DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 22/165 (13%)

Query: 95  LGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCY------ 148
           LG     YALGRY+ A+++    ++   + P + + L      LG    A+         
Sbjct: 11  LGVQ--LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR 68

Query: 149 -------W--LAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHL 199
                  +  L+  Y      L++        +G    A+S L +A + +P    L    
Sbjct: 69  TPRYLGGYMVLSEAYVA----LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124

Query: 200 ASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE 244
             +Y  LG   +A    +Q + L     E     A+LY   G+++
Sbjct: 125 GLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLD 168

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 19/131 (14%)

Query: 97  DASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQ 156
                   G  E+A+SVL +  R+       +   GLV+  LG   KA       A  KQ
Sbjct: 90  AEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAE------ASLKQ 143

Query: 157 ----KD-----SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG 207
               +D     S+L +L     +  G    A++  ++A++  P D  L+   AS  +  G
Sbjct: 144 ALALEDTPEIRSALAEL----YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG 199

Query: 208 NFQRAADVYRQ 218
             + AA     
Sbjct: 200 KAEEAARAAAL 210

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 18/85 (21%), Positives = 25/85 (29%)

Query: 178 AMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLY 237
               L   +    ++  L+F L   Y E   F  A    R  +   P    A K   K  
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 238 QKSGQIESSVDILEDYLKGHPTEAD 262
           Q  G    +    E  L    +  D
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSRGD 88

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 89  PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCY 148
             +R  LG    +    +++ A+  L   +  +     ++  LG      G+ A A   +
Sbjct: 19  MLLRFTLGKT--YAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAW 76

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 17/97 (17%), Positives = 41/97 (42%)

Query: 189 DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVD 248
           DP D   ++ LA  +++  N  RA  ++ ++V+  P+ +       KLY++  + + ++D
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 249 ILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKH 285
                ++    E     +  L    ++    +    H
Sbjct: 63  TYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHH 99

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228
            ++  + + A++   E V+ DP+     +HL  LY  L     A D Y Q +++  E   
Sbjct: 17  HLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76

Query: 229 A 229
            
Sbjct: 77  Q 77

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 52.3 bits (125), Expect = 4e-07
 Identities = 37/307 (12%), Positives = 86/307 (28%), Gaps = 29/307 (9%)

Query: 123 ELPNSYHILGLVHDALGNTAKAMGC-YWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSC 181
                          L      +   Y     Y +  S          + Q +    +  
Sbjct: 32  RGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDV-QEEMEKTLQQ 90

Query: 182 LSEAVKADPNDFKLKFHLASLYVELGNF-QRAADVYRQMVQLCPENIEALKMGAKLYQKS 240
           + E + +   + +             ++   A  +  + V+L PE +EA     ++Y K 
Sbjct: 91  MEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK 150

Query: 241 GQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELL 300
           G + S+       L     +     + ++   L   +  +     ++ V           
Sbjct: 151 GDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR--QAKLA--- 205

Query: 301 LALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYH 360
           + + +  G     LGN       L+         +  +        +    Y+ A K   
Sbjct: 206 VQMDVLDGRSWYILGNA-----YLSL--------YFNTGQNPKISQQALSAYAQAEKVDR 252

Query: 361 MLEANAGVH-NDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLED 419
              +N  +H N   LH          +   +++  F +A  +     + +     LL   
Sbjct: 253 KASSNPDLHLNRATLHKY-------EESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL 305

Query: 420 AKDEEAI 426
           ++    +
Sbjct: 306 SRLTSLL 312

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 48.1 bits (114), Expect = 8e-06
 Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 27/181 (14%)

Query: 89  PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPN--SYHILGLVHDALG------- 139
            E    LG+   ++  G    A +     +       N  S   L +V   L        
Sbjct: 137 VEAWNQLGEV--YWKKGDVTSAHTCFSGALTHC---KNKVSLQNLSMVLRQLQTDSGDEH 191

Query: 140 --NTAKAMGCYWLAACYKQKDSSLW--------KLIFPWLIEQGDTTWAMSCLSEAVKAD 189
             +   ++    LA      D   W         L F        +  A+S  ++A K D
Sbjct: 192 SRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD 251

Query: 190 ---PNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESS 246
               ++  L  + A+L+    ++  A + + Q   L P   E  +   +L +   ++ S 
Sbjct: 252 RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311

Query: 247 V 247
           +
Sbjct: 312 L 312

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 14/134 (10%), Positives = 40/134 (29%), Gaps = 5/134 (3%)

Query: 104 LGRYEEAISVLHEVIRLEEELPNS---YHILGLVHDALGNTAKAMGCYWLAACYKQKDSS 160
               ++A+S   +  +++ +  ++   +     +H    +  +A+  +  AA        
Sbjct: 234 PKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE 293

Query: 161 LWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMV 220
             +     L      T  +    +               A L        ++A   +  +
Sbjct: 294 PQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQK--M 351

Query: 221 QLCPENIEALKMGA 234
            L  + +  L+ G 
Sbjct: 352 TLELKPLSTLQPGV 365

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 20/132 (15%), Positives = 49/132 (37%)

Query: 90  EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYW 149
              ++L   S     G + +A++V+  +    +   +                 A     
Sbjct: 5   PDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLA 64

Query: 150 LAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNF 209
                 Q +S    +    L +Q   +  +  L + + A+P++F+L   LA  Y ++G  
Sbjct: 65  TIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRD 124

Query: 210 QRAADVYRQMVQ 221
           + A ++   +++
Sbjct: 125 EEALELLWNILK 136

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 16/121 (13%), Positives = 40/121 (33%), Gaps = 2/121 (1%)

Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228
           L++QG+   A++ +        +   +K   A   +E   F+ A ++   +     +N  
Sbjct: 16  LLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSY 75

Query: 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPT--EADFGVIDLLASMLVQMNAYDRVLKHI 286
              +      +       +  LE  L  +P   E    +      +     A + +   +
Sbjct: 76  KSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNIL 135

Query: 287 E 287
           +
Sbjct: 136 K 136

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 19/64 (29%), Positives = 30/64 (46%)

Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228
            + +G    A+  L EA+KA P D  L+     L    G+F+RA +   Q ++L PE + 
Sbjct: 7   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66

Query: 229 ALKM 232
               
Sbjct: 67  GASQ 70

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 45.8 bits (110), Expect = 4e-06
 Identities = 28/125 (22%), Positives = 60/125 (48%)

Query: 102 YALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSL 161
           Y  G Y+EAI    + + L+     +++ LG  +   G+  +A+  Y  A     + +  
Sbjct: 12  YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71

Query: 162 WKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQ 221
           W  +     +QGD   A+    +A++ DP   +  ++L + Y + G++  A + Y++ ++
Sbjct: 72  WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131

Query: 222 LCPEN 226
           L P +
Sbjct: 132 LDPRS 136

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 34/325 (10%), Positives = 80/325 (24%), Gaps = 84/325 (25%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPN------SYHILGLVHDALGNTAKAMGCYWLA 151
               +    Y EAI    E  +    + +       +  +   +  +  T  +M      
Sbjct: 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI--- 164

Query: 152 ACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQR 211
                +                    A+              +  F +A  Y +  ++ +
Sbjct: 165 ----LQ--------------------ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDK 200

Query: 212 AADVYRQMVQLCPENIEALKMG------AKLYQKSGQIESSVDILEDYLKGHPTEADFGV 265
           A       ++L  +      +       A  Y +SG  + +V+  +   K    +    +
Sbjct: 201 ALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260

Query: 266 IDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILL- 324
             +L  +                                        + G T KA   + 
Sbjct: 261 PKVLFGL-----------------------------------SWTLCKAGQTQKAFQFIE 285

Query: 325 ------TAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKI 378
                 TA   +   +    +  +     +       L Y+     +A +          
Sbjct: 286 EGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEA---CARSA 342

Query: 379 AECSLALKEREKSIIYFYKALQILE 403
           A    +    E++  ++ K L+  E
Sbjct: 343 AAVFESSCHFEQAAAFYRKVLKAQE 367

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 45/266 (16%), Positives = 89/266 (33%), Gaps = 24/266 (9%)

Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228
            +++GD   A+     AV+ DP   +   +L +   E      A    R+ ++L P+N  
Sbjct: 74  RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT 133

Query: 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIEL 288
           AL   A  +        + +IL D+L+  P  A         +    +    R+L  +  
Sbjct: 134 ALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193

Query: 289 VDLVYYSGKELLLALKIKA-----------GICHIQLGNTDKA-EILLTAIHWENVSDHA 336
             L     +  L A+++             G+     G  DKA +    A+      +  
Sbjct: 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL--SVRPNDY 251

Query: 337 ESINEIADLFKNRELYSTALKYYHM-LEAN---AGVHNDGCLHLKIAECSLALKEREKSI 392
              N++     N      A+  Y   LE          +      +    + L    +++
Sbjct: 252 LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN------LGISCINLGAHREAV 305

Query: 393 IYFYKALQILEDNIDARLTLASLLLE 418
            +F +AL +   +   R    ++   
Sbjct: 306 EHFLEALNMQRKSRGPRGEGGAMSEN 331

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 31/326 (9%), Positives = 74/326 (22%), Gaps = 83/326 (25%)

Query: 95  LGDASLHYALGRYEEAISVLHEVIRLEEELPN------SYHILGLVHDALGNTAKAMGCY 148
                       Y  AI    +       + +       +  +   +  +  T  +M   
Sbjct: 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYA 166

Query: 149 WLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN 208
             A    ++              +      + C                  A+ +++L  
Sbjct: 167 RQAYEIYKE-------------HEAYNIRLLQCH--------------SLFATNFLDLKQ 199

Query: 209 FQRAADVYRQMVQLCPENIEALKMG------AKLYQKSGQIESSVDILEDYLKGHPTEAD 262
           ++ A   +++   +     +   MG              Q E ++   +  +        
Sbjct: 200 YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA------- 252

Query: 263 FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEI 322
                                  +  +   Y+                H +LG  DKA  
Sbjct: 253 ----------------VFEESNILPSLPQAYFL-----------ITQIHYKLGKIDKAHE 285

Query: 323 LL-------TAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLH 375
                                E +  +     + E       +       A + +     
Sbjct: 286 YHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLED---FA 342

Query: 376 LKIAECSLALKEREKSIIYFYKALQI 401
           + +A+     K  +K+  YF K  Q+
Sbjct: 343 IDVAKYYHERKNFQKASAYFLKVEQV 368

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 21/164 (12%), Positives = 47/164 (28%), Gaps = 20/164 (12%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELP------NSYHILGLVHDALGNTAKAMGCY-WL 150
           A       + E+A     +                ++   G++   L    +A+      
Sbjct: 43  AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKA 102

Query: 151 AACYKQKD-----SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKF------HL 199
           +  Y +       +         L+E  D + A+    +A     N+ +L+         
Sbjct: 103 SVMYVENGTPDTAAMALDRAG-KLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161

Query: 200 ASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQI 243
           + L V    F  AA   ++   +  + +E      K       +
Sbjct: 162 SRLLVRQQKFDEAAASLQKEKSMY-KEMENYPTCYKKCIAQVLV 204

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 24/255 (9%), Positives = 63/255 (24%), Gaps = 56/255 (21%)

Query: 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEA 185
           + Y    +         +A   Y   A                         A     +A
Sbjct: 37  SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHAN--------------NRSLFHAAKAFEQA 82

Query: 186 VKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN------IEALKMGAKLYQK 239
                           +  +L     A     +   +  EN        AL    KL + 
Sbjct: 83  --------------GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME- 127

Query: 240 SGQIESSVDILEDYLKGHPTEADF----GVIDLLASMLVQMN-------AYDRVLKHIEL 288
              +  +V + +        E        +I   + +LV+         +  +     + 
Sbjct: 128 PLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187

Query: 289 VDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILL---TAIHWENVSDHAESINEIADL 345
           ++      K+ +        +  +   +   A+  +    +I   + S+   ++ ++   
Sbjct: 188 MENYPTCYKKCI-----AQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQA 242

Query: 346 FKNR--ELYSTALKY 358
           +  +  E      + 
Sbjct: 243 YDEQDEEQLLRVCRS 257

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 20/147 (13%), Positives = 34/147 (23%), Gaps = 46/147 (31%)

Query: 90  EIRRMLGD-----------ASLHYALGRYEEAISVLHEVIRLEEELPN-------SYHIL 131
           +  +  GD             +    G ++ A     E   L   LP        + + +
Sbjct: 54  QQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEV 113

Query: 132 GLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPN 191
             V    G+ A A   Y  +  Y Q              +  D                 
Sbjct: 114 ATVALHFGDLAGARQEYEKSLVYAQ--------------QADDQVAIACAFR-------- 151

Query: 192 DFKLKFHLASLYVELGNFQRAADVYRQ 218
                  L  L  +  N   A   + +
Sbjct: 152 ------GLGDLAQQEKNLLEAQQHWLR 172

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 24/154 (15%), Positives = 50/154 (32%), Gaps = 44/154 (28%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPN------SYHILGLVHDALGNTAKAMGCYWLA 151
            + HY LG + +A+    + + + +E  +      +Y  LG  +  LG    A   Y   
Sbjct: 16  GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYY--- 72

Query: 152 ACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQR 211
               +K   L + +        D                        L + Y  L ++++
Sbjct: 73  ----KKTLLLARQL-------KDRAVEAQSCY--------------SLGNTYTLLQDYEK 107

Query: 212 AADVYRQMVQLCPENIEALKMGAKLYQKSGQIES 245
           A D + +           L +  +L  + G+  +
Sbjct: 108 AIDYHLK----------HLAIAQELKDRIGEGRA 131

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 17/76 (22%)

Query: 90  EIRRMLGD-----------ASLHYALGRYEEAISVLHEVIRLEEELPN------SYHILG 132
            + R L D            + +  L  YE+AI    + + + +EL +      +   LG
Sbjct: 77  LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLG 136

Query: 133 LVHDALGNTAKAMGCY 148
             + ALGN  +AM   
Sbjct: 137 NAYTALGNHDQAMHFA 152

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 17/76 (22%)

Query: 90  EIRRMLGD-----------ASLHYALGRYEEAISVLHEVIRLEEELPN------SYHILG 132
            I +  GD            + +  LG +E A     + + L  +L +      S + LG
Sbjct: 37  LIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 96

Query: 133 LVHDALGNTAKAMGCY 148
             +  L +  KA+  +
Sbjct: 97  NTYTLLQDYEKAIDYH 112

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 14/127 (11%), Positives = 39/127 (30%), Gaps = 18/127 (14%)

Query: 100 LHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS 159
           ++  L    EA       I  ++ L  +Y   G+++        A+     A        
Sbjct: 46  MYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEA-------- 97

Query: 160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQM 219
                     + Q      +      ++      ++ +++A +Y +   +++A +     
Sbjct: 98  ----------LIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147

Query: 220 VQLCPEN 226
             +  E 
Sbjct: 148 TSMKSEP 154

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 3/94 (3%)

Query: 172 QGDTTWAMSCLSEAVK---ADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228
            G    A+    +A+       +  +    L S +  LG +++A  V    V+  P +  
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62

Query: 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD 262
                A +    G+ E  V++L   +     +  
Sbjct: 63  LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 11/64 (17%), Positives = 20/64 (31%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
            S    LG Y +A +VL   ++             +V   LG   + +            
Sbjct: 34  GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93

Query: 158 DSSL 161
           D ++
Sbjct: 94  DETI 97

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 44.7 bits (105), Expect = 7e-05
 Identities = 18/156 (11%), Positives = 48/156 (30%), Gaps = 7/156 (4%)

Query: 100 LHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNT-AKAMGCYWLAACYKQKD 158
           +     R E A  +  + I L       +H   ++  +L     + M         + K+
Sbjct: 106 VLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN 165

Query: 159 SSLW---KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADV 215
             +W   +++  WL    D +  +  +++ +  D  ++    H   +  E   +      
Sbjct: 166 YQVWHHRRVLVEWL---RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY 222

Query: 216 YRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILE 251
             Q+++    N         +   +        +  
Sbjct: 223 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLER 258

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 23/159 (14%), Positives = 50/159 (31%), Gaps = 20/159 (12%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPN------SYHILGLVHDALGNTAKAMGCY-WL 150
           A+++        A     +    +++  N      +Y        + GN+  A+      
Sbjct: 44  ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA 103

Query: 151 AACYKQKD------SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND------FKLKFH 198
              +  +       +  ++L      +  D   A+ C   A +    D       K    
Sbjct: 104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK 163

Query: 199 LASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLY 237
            A L    G +  A+D+Y ++++    N    +   K Y
Sbjct: 164 CADLKALDGQYIEASDIYSKLIKSSMGN-RLSQWSLKDY 201

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 33/235 (14%), Positives = 68/235 (28%), Gaps = 33/235 (14%)

Query: 209 FQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDL 268
             +AA +YR + +      ++    A   +K+G  + + +   +                
Sbjct: 40  CVQAATIYR-LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVE---------------- 82

Query: 269 LASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIK---AGICHIQLGNTDKA-EILL 324
                         +  +E    ++    +       K     I    L +  KA +   
Sbjct: 83  AYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142

Query: 325 TAIHW----ENVSDHAESINEIADLFKNRELYSTALKYY-----HMLEANAGVHNDGCLH 375
            A  W    ++V+   +   + ADL      Y  A   Y       +       +     
Sbjct: 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202

Query: 376 LKIAECSLALKEREKSIIYFYKALQILEDNIDAR-LTLASLLLE--DAKDEEAIS 427
           LK   C LA  +   +     +      +  D+R       L++  +  D E +S
Sbjct: 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 169 LIEQGDTTWAMSCLSEAVKADPNDF-KLKFHLASLYVELGNFQRAADVYRQMVQLCPENI 227
           LI QGD   A+  L E ++ +P    +  + + + Y +LG++Q+A + Y+  ++L P++ 
Sbjct: 10  LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69

Query: 228 EA 229
             
Sbjct: 70  AL 71

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 23/161 (14%), Positives = 47/161 (29%), Gaps = 13/161 (8%)

Query: 105 GRYEEAISVLHEVIRLEEELPNSYHILGLVHDALG--NTAKAMGCYWLAACYKQKDSSLW 162
                A  +L E+++   E   +     LV       +         L        +   
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272

Query: 163 KLIFPW--------LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAAD 214
                          + +G T  +   ++  +  + + +     L  +Y   G  + AAD
Sbjct: 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAAD 331

Query: 215 VYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLK 255
            Y     L P       +   ++Q S  +   V  L+ +L 
Sbjct: 332 AYLTAFNLRPGANTLYWIENGIFQTS--VPYVVPYLDKFLA 370

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 26/137 (18%)

Query: 103 ALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLW 162
           A+ +Y + +S L     L E+   +      +  A  N         LA CY        
Sbjct: 287 AVIQYGKIVSWLEMEYGLSEKESKA--SESFLLAAFLN---------LAMCY-------- 327

Query: 163 KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL 222
                  ++  + T A+ C  +A+  D  + K  +      + +  F+ A   + +++++
Sbjct: 328 -------LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380

Query: 223 CPENIEALKMGAKLYQK 239
            P+N  A    +   +K
Sbjct: 381 NPQNKAARLQISMCQKK 397

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	765
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.98
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.97
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.97
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.97
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.97
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.97
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.97
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.96
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.96
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.95
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.95
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.95
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.95
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.95
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.93
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.93
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.93
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.93
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.93
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.93
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.93
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.93
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.93
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.92
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.92
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.92
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.91
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.91
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.9
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.9
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.9
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.89
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.89
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.89
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.89
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.88
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.88
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.88
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.88
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.88
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.88
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.88
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.88
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.87
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.87
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.87
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.87
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.87
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.86
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.85
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.85
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.84
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.84
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.84
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.83
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.83
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.83
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.83
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.82
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.82
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.82
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.82
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.81
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.81
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.81
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.8
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.79
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.79
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.79
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.78
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.78
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.78
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.78
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.77
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.77
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.77
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.77
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.76
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.76
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.75
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.74
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.74
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.73
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.73
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.72
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.72
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.72
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.71
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.7
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.7
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.69
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.68
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.68
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.67
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.67
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.65
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.62
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.62
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.62
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.62
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.62
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.62
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.62
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.61
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.61
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.6
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.59
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.59
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.58
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.58
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.58
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.55
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.55
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.55
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.54
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.53
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.53
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.52
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.52
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.52
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.52
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.52
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.51
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.51
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.51
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.51
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.51
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.49
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.49
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.49
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.49
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.49
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.49
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.48
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.46
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.46
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.46
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.46
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.45
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.45
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.45
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.45
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.44
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.43
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.43
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.43
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.42
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.42
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.42
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.41
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.41
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.41
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.4
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.4
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.4
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.39
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.39
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.38
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.38
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.38
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.36
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.34
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.34
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.33
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.33
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.32
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.32
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.32
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.32
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.3
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.29
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.29
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.28
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.27
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.26
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.23
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.18
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.18
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.03
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.0
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.99
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.93
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.9
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.89
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.88
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.85
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.83
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.78
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.75
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.74
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.72
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.7
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.63
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.58
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.57
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.55
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.54
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.44
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.42
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.26
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.23
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.22
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.19
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.14
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.96
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.9
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.86
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.79
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.64
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.63
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.5
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	97.26
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.12
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.98
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.92
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.92
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	96.82
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.81
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.79
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.75
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.55
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.37
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.29
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.16
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.12
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.02
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.93
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.75
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.71
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.54
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.49
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.41
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.16
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.02
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	94.9
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.72
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.67
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.28
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	93.02
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.42
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.0
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.91
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.56
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	90.76
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	90.68
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	90.09
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	89.02
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	86.88
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	81.78

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=9.6e-42  Score=358.42  Aligned_cols=385  Identities=15%  Similarity=0.108  Sum_probs=370.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH
Q 004249           96 GDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDT  175 (765)
Q Consensus        96 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~  175 (765)
                      ..|..+++.|++++|+..+.++++.+|+++.++..+|.++...|++++|...+++++..+|.++.++..+|.++...|++
T Consensus         4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~   83 (388)
T 1w3b_A            4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 004249          176 TWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLK  255 (765)
Q Consensus       176 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  255 (765)
                      ++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++.
T Consensus        84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  163 (388)
T 1w3b_A           84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE  163 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCCh
Q 004249          256 GHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDH  335 (765)
Q Consensus       256 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  335 (765)
                      .+|++..  ++..+|.++...|++++|+..|++++..    .|....++..+|.++...|++++|+..+++++... |.+
T Consensus       164 ~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~  236 (388)
T 1w3b_A          164 TQPNFAV--AWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH  236 (388)
T ss_dssp             HCTTCHH--HHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred             hCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence            9998766  7889999999999999999999999999    78889999999999999999999999999998877 788


Q ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004249          336 AESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASL  415 (765)
Q Consensus       336 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  415 (765)
                      +.++..+|.++...|++++|+..|++++..  .|+++.++..+|.++...|++++|+..|+++++..|.+..++..++.+
T Consensus       237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  314 (388)
T 1w3b_A          237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI  314 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence            999999999999999999999999999999  899999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHH
Q 004249          416 LLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHR  495 (765)
Q Consensus       416 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~  495 (765)
                      +...|++++|+..++++++..|..            ..++..++.++...|++++|+..+.+++.         .+|+.+
T Consensus       315 ~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~---------~~p~~~  373 (388)
T 1w3b_A          315 KREQGNIEEAVRLYRKALEVFPEF------------AAAHSNLASVLQQQGKLQEALMHYKEAIR---------ISPTFA  373 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHTTSCTTC------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHT---------TCTTCH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCc------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------hCCCCH
Confidence            999999999999999999988876            67889999999999999999999999986         778999


Q ss_pred             HHHHHHHHHHHhhhc
Q 004249          496 LLIIDLCKTLASLHR  510 (765)
Q Consensus       496 ~~~~~l~~~~~~~~~  510 (765)
                      .++..+|.++...|+
T Consensus       374 ~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          374 DAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHHTCC
T ss_pred             HHHHhHHHHHHHccC
Confidence            999999999887764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-40  Score=372.29  Aligned_cols=459  Identities=14%  Similarity=0.071  Sum_probs=409.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 004249           89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPW  168 (765)
Q Consensus        89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~  168 (765)
                      +.+..+...+..+...|++++|+..|++++...|+. ..++.+|.++...|++++|+..|++++.. |.++.++..++.+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~  159 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC  159 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence            356667788889999999999999999999999954 77889999999999999999999998765 6789999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcC----------------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 004249          169 LIEQGDTTWAMSCLSEAVKAD----------------PNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKM  232 (765)
Q Consensus       169 ~~~~g~~~~A~~~~~~al~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  232 (765)
                      |...|++++|+..|++.....                |.+..++..+|.+|...|++++|+..|+++++.+|.+..++..
T Consensus       160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  239 (597)
T 2xpi_A          160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ  239 (597)
T ss_dssp             HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence            999999999999998643222                2248899999999999999999999999999999999888776


Q ss_pred             HHH--------------------------------------HHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 004249          233 GAK--------------------------------------LYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLV  274 (765)
Q Consensus       233 la~--------------------------------------~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~  274 (765)
                      ++.                                      .|...|++++|+..|+++++. |.+  ..++..++.++.
T Consensus       240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~--~~~~~~l~~~~~  316 (597)
T 2xpi_A          240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKS--SDLLLCKADTLF  316 (597)
T ss_dssp             HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGC--HHHHHHHHHHHH
T ss_pred             HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-Cch--HHHHHHHHHHHH
Confidence            643                                      344678999999999999887 444  347889999999


Q ss_pred             HhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHH
Q 004249          275 QMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYST  354 (765)
Q Consensus       275 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  354 (765)
                      ..|++++|+..|++++..    .+....++..++.++...|++++|...+++++... |.++.++..+|.++...|++++
T Consensus       317 ~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~  391 (597)
T 2xpi_A          317 VRSRFIDVLAITTKILEI----DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE  391 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHH----CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred             HhcCHHHHHHHHHHHHHc----CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence            999999999999999998    56677788999999999999999999999998666 7889999999999999999999


Q ss_pred             HHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCC
Q 004249          355 ALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMS  434 (765)
Q Consensus       355 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  434 (765)
                      |+.+|++++..  .|.+..+|..++.++...|++++|+..|+++++..|.+..++..++.++...|++++|+.+|+++++
T Consensus       392 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  469 (597)
T 2xpi_A          392 ARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA  469 (597)
T ss_dssp             HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999998  8999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhH-HHHHHHHHHHHHhhhcHHH
Q 004249          435 LENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEH-RLLIIDLCKTLASLHRYED  513 (765)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~l~~~~~~~~~~~~  513 (765)
                      ..|..            ..++..++.++...|++++|++.+.+++.....   .-.+|++ ..++..+|.++...|++++
T Consensus       470 ~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~p~~~~~~~~~l~~~~~~~g~~~~  534 (597)
T 2xpi_A          470 LFQYD------------PLLLNELGVVAFNKSDMQTAINHFQNALLLVKK---TQSNEKPWAATWANLGHAYRKLKMYDA  534 (597)
T ss_dssp             HCCCC------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---SCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred             hCCCC------------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc---cccchhhHHHHHHHHHHHHHHhcCHHH
Confidence            87776            578899999999999999999999999863100   0024554 7899999999999999999


Q ss_pred             HHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHh
Q 004249          514 AIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVS  579 (765)
Q Consensus       514 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  579 (765)
                      |+..|+++++..    |.++..+..++. ++...|++++|...|+++++.+|+++.++..++.++.
T Consensus       535 A~~~~~~~~~~~----p~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          535 AIDALNQGLLLS----TNDANVHTAIAL-VYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHHHHHHS----SCCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhC----CCChHHHHHHHH-HHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            999999999998    677777777777 9999999999999999999999999999888876653

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=3.6e-40  Score=346.37  Aligned_cols=378  Identities=16%  Similarity=0.115  Sum_probs=313.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q 004249          130 ILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNF  209 (765)
Q Consensus       130 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  209 (765)
                      .+|..++..|++++|+..+.+++..+|++..++..+|.++...|++++|...+++++..+|.++.++..+|.++...|++
T Consensus         4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~   83 (388)
T 1w3b_A            4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence            46888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249          210 QRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELV  289 (765)
Q Consensus       210 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  289 (765)
                      ++|+..|++++...|+++.++..+|.++...|++++|+..|+++++.+|+...  ++..+|.++...|++++|+..|+++
T Consensus        84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~a  161 (388)
T 1w3b_A           84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC--VRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH--HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998876  6779999999999999999999999


Q ss_pred             HHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCC
Q 004249          290 DLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVH  369 (765)
Q Consensus       290 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  369 (765)
                      +..    .|....++..+|.++...|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++..  .|
T Consensus       162 l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p  234 (388)
T 1w3b_A          162 IET----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SP  234 (388)
T ss_dssp             HHH----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CT
T ss_pred             HHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Cc
Confidence            988    67777888888888888888888888888887766 677888888888888888888888888888887  78


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhh
Q 004249          370 NDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWW  449 (765)
Q Consensus       370 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  449 (765)
                      +++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..|..          
T Consensus       235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----------  304 (388)
T 1w3b_A          235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH----------  304 (388)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC----------
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc----------
Confidence            8888888888888888888888888888888888888888888888888888888888777777666554          


Q ss_pred             hhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCC
Q 004249          450 LNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKF  529 (765)
Q Consensus       450 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  529 (765)
                        ..++..++.++...|++++|+..+.+++.         ..|++..++..+|.++...|++++|+..|++++++.    
T Consensus       305 --~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----  369 (388)
T 1w3b_A          305 --ADSLNNLANIKREQGNIEEAVRLYRKALE---------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS----  369 (388)
T ss_dssp             --HHHHHHHHHHHHTTTCHHHHHHHHHHHTT---------SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC----
T ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----
Confidence              45556666666666666666666666654         445566666666666666666666666666666655    


Q ss_pred             CchHHHHHHHHh
Q 004249          530 PVEKEELYFLGA  541 (765)
Q Consensus       530 ~~~~~~~~~~~~  541 (765)
                      |..+..++.++.
T Consensus       370 p~~~~a~~~lg~  381 (388)
T 1w3b_A          370 PTFADAYSNMGN  381 (388)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             CCCHHHHHhHHH
Confidence            444444444444

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.6e-41  Score=372.96  Aligned_cols=487  Identities=11%  Similarity=-0.014  Sum_probs=404.1

Q ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004249          123 ELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL  202 (765)
Q Consensus       123 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  202 (765)
                      .+...|..++..+...|++++|+..|++++...|+ ...+..+|.++...|++++|+..|++++.. |.++.++..++.+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~  159 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC  159 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCC-chHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence            34678899999999999999999999999998884 477888999999999999999999998765 6789999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHH
Q 004249          203 YVELGNFQRAADVYRQMVQLC----------------PENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVI  266 (765)
Q Consensus       203 ~~~~g~~~~A~~~~~~al~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  266 (765)
                      |...|++++|+..|++.....                |.+..++..+|.+|...|++++|+..|+++++.+|++..  ++
T Consensus       160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~  237 (597)
T 2xpi_A          160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE--AF  237 (597)
T ss_dssp             HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HH
T ss_pred             HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH--HH
Confidence            999999999999999632222                223789999999999999999999999999999998765  66


Q ss_pred             HHHHHHHHHhccHHHHHHH---HHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHH
Q 004249          267 DLLASMLVQMNAYDRVLKH---IELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIA  343 (765)
Q Consensus       267 ~~l~~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la  343 (765)
                      ..++.++...+....+...   +.+....   +.......+..++..+...|++++|+..|++++..  +.+..++..++
T Consensus       238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~  312 (597)
T 2xpi_A          238 DQLVSNHLLTADEEWDLVLKLNYSTYSKE---DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA  312 (597)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHSCTHHHHGG---GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred             HHHHHhhcccchhHHHHHHhcCCcccccc---hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence            6777766655444333221   2222111   11112223344466777888899999999888654  56788888999


Q ss_pred             HHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHH
Q 004249          344 DLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDE  423 (765)
Q Consensus       344 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  423 (765)
                      .++...|++++|+.+|++++..  .|.+..++..++.++...|++++|+..+++++...|.+..++..++.+|...|+++
T Consensus       313 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  390 (597)
T 2xpi_A          313 DTLFVRSRFIDVLAITTKILEI--DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKIS  390 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHH
Confidence            9999999999999999999888  78888888899999999999999999999999888999999999999999999999


Q ss_pred             HHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHH
Q 004249          424 EAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCK  503 (765)
Q Consensus       424 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~  503 (765)
                      +|+.+|+++++.+|..            ..++..++.++...|++++|++.+.+++.         ..|++..++..+|.
T Consensus       391 ~A~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~~~l~~  449 (597)
T 2xpi_A          391 EARRYFSKSSTMDPQF------------GPAWIGFAHSFAIEGEHDQAISAYTTAAR---------LFQGTHLPYLFLGM  449 (597)
T ss_dssp             HHHHHHHHHHHHCTTC------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------TTTTCSHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCccchHHHHHHHH
Confidence            9999998888877765            56788889999999999999999888876         56777888888999


Q ss_pred             HHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHh------CCCc-hhhhHHHHH
Q 004249          504 TLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKL------HPHR-LTTWNRYYK  576 (765)
Q Consensus       504 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------~p~~-~~~~~~~~~  576 (765)
                      ++...|++++|+++|+++++..    |.++..+..++. ++...|++++|+..|+++++.      +|++ ..+|..++.
T Consensus       450 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~  524 (597)
T 2xpi_A          450 QHMQLGNILLANEYLQSSYALF----QYDPLLLNELGV-VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH  524 (597)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC----CCCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHH-HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Confidence            9999999999999999998887    666666666666 888899999999999999887      5654 677888888


Q ss_pred             HHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 004249          577 LVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTAL  647 (765)
Q Consensus       577 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  647 (765)
                      ++...|+. +.+...+.+.++..|++...+..+|.++...|++++|+..|.++++++|+++.+...++.+|
T Consensus       525 ~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  594 (597)
T 2xpi_A          525 AYRKLKMY-DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL  594 (597)
T ss_dssp             HHHHTTCH-HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred             HHHHhcCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            88777765 67888888888888888888999999999999999999999999999999999988888765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=2.7e-36  Score=332.03  Aligned_cols=445  Identities=12%  Similarity=0.078  Sum_probs=331.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004249          159 SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQ  238 (765)
Q Consensus       159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  238 (765)
                      ...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  104 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE  104 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            45667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChh
Q 004249          239 KSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTD  318 (765)
Q Consensus       239 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  318 (765)
                      ..|++++|+..|+ ++...|+...     .....+...+...+|+..+++++...+...+.... .......+....+..
T Consensus       105 ~~g~~~~A~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~  177 (537)
T 3fp2_A          105 SLGNFTDAMFDLS-VLSLNGDFDG-----ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLP-SNTSLASFFGIFDSH  177 (537)
T ss_dssp             HHTCHHHHHHHHH-HHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCC-CHHHHHHHHHTSCHH
T ss_pred             HcCCHHHHHHHHH-HHhcCCCCCh-----HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccc-hHhHHHHHHHhcChH
Confidence            7777777777774 6666666544     12334455556677777777776552211111100 111222344556666


Q ss_pred             HHHHHHHhhcccCCCChHHHHHHHHHHHHc--------cccHHHHHHHHHHHHhccCCCCCHH-------HHHHHHHHHH
Q 004249          319 KAEILLTAIHWENVSDHAESINEIADLFKN--------RELYSTALKYYHMLEANAGVHNDGC-------LHLKIAECSL  383 (765)
Q Consensus       319 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~~la~~~~  383 (765)
                      .+...+....... +........++.++..        .|++++|+..|++++..  .|+++.       ++..+|.++.
T Consensus       178 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~  254 (537)
T 3fp2_A          178 LEVSSVNTSSNYD-TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHF  254 (537)
T ss_dssp             HHHHTSCCCCSSC-SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccc-cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHH
Confidence            6666665554333 4444455555544433        35899999999999998  888755       5777888999


Q ss_pred             HhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHH
Q 004249          384 ALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYK  463 (765)
Q Consensus       384 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  463 (765)
                      ..|++++|+..|++++..+|. ..++..+|.++...|++++|+..+++++..+|..            ..++..+|.++.
T Consensus       255 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~~  321 (537)
T 3fp2_A          255 LKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY------------PPTYYHRGQMYF  321 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHH
T ss_pred             hcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC------------HHHHHHHHHHHH
Confidence            999999999999999999999 9999999999999999999999999999888876            678899999999


Q ss_pred             hcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhc
Q 004249          464 AKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQI  543 (765)
Q Consensus       464 ~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  543 (765)
                      ..|++++|+..+.+++.         ..|.+..++..+|.++...|++++|+..+++++...    |.++..+..++. +
T Consensus       322 ~~~~~~~A~~~~~~a~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~-~  387 (537)
T 3fp2_A          322 ILQDYKNAKEDFQKAQS---------LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF----PTLPEVPTFFAE-I  387 (537)
T ss_dssp             HTTCHHHHHHHHHHHHH---------HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCTHHHHHHHH-H
T ss_pred             hcCCHHHHHHHHHHHHH---------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHH-H
Confidence            99999999999999986         567788899999999999999999999999999988    666666666666 9


Q ss_pred             ccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhh-------
Q 004249          544 PCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMI-------  616 (765)
Q Consensus       544 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~-------  616 (765)
                      +...|++++|+..|++++...|++...+..++..                             ...|.++...       
T Consensus       388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-----------------------------~~~a~~~~~~~~~~~~~  438 (537)
T 3fp2_A          388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL-----------------------------IGKATILARQSSQDPTQ  438 (537)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHH-----------------------------HHHHHHHHHHHTC----
T ss_pred             HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHH-----------------------------HHHHHHHHHHhhccchh
Confidence            9999999999999999999988776554433221                             2234555555       


Q ss_pred             ---hhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHHHHHH
Q 004249          617 ---SHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIARAYHH  693 (765)
Q Consensus       617 ---~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~  693 (765)
                         |++++|+..|.++++.+|+++                                            .+++++|.+|..
T Consensus       439 ~~~~~~~~A~~~~~~a~~~~p~~~--------------------------------------------~~~~~l~~~~~~  474 (537)
T 3fp2_A          439 LDEEKFNAAIKLLTKACELDPRSE--------------------------------------------QAKIGLAQLKLQ  474 (537)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCTTCH--------------------------------------------HHHHHHHHHHHH
T ss_pred             hhHhHHHHHHHHHHHHHHhCCCCH--------------------------------------------HHHHHHHHHHHH
Confidence               999999999999999999853                                            456888899999


Q ss_pred             hchHHHHHHHHHHHHhhhhc
Q 004249          694 VGLVSLAASYYEKVLAMYQK  713 (765)
Q Consensus       694 ~g~~~~A~~~y~k~l~~~~~  713 (765)
                      .|++++|+.+|++++++.|+
T Consensus       475 ~g~~~~A~~~~~~al~~~~~  494 (537)
T 3fp2_A          475 MEKIDEAIELFEDSAILART  494 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHC--
T ss_pred             hccHHHHHHHHHHHHHhCCC
Confidence            99999999999999999885

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=2.3e-35  Score=324.55  Aligned_cols=409  Identities=12%  Similarity=0.021  Sum_probs=342.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL  169 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  169 (765)
                      ....++..|..++..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|++++..+|+++.++..+|.++
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  103 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----------------------
Q 004249          170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI----------------------  227 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------------  227 (765)
                      ...|++++|+..|+ ++...|+....+.   ..+...+...+|+..+++++...|...                      
T Consensus       104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (537)
T 3fp2_A          104 ESLGNFTDAMFDLS-VLSLNGDFDGASI---EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE  179 (537)
T ss_dssp             HHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred             HHcCCHHHHHHHHH-HHhcCCCCChHHH---HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence            99999999999996 8888887665542   244555666788888888876543221                      


Q ss_pred             ---------------HHHHHHHHH--------HHHcCCHHHHHHHHHHHHhcCCCCCC-----HHHHHHHHHHHHHhccH
Q 004249          228 ---------------EALKMGAKL--------YQKSGQIESSVDILEDYLKGHPTEAD-----FGVIDLLASMLVQMNAY  279 (765)
Q Consensus       228 ---------------~~~~~la~~--------~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~~~l~~~~~~~~~~  279 (765)
                                     .....++.+        ....|++++|+..++++++.+|++..     ..++..+|.++...|++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~  259 (537)
T 3fp2_A          180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL  259 (537)
T ss_dssp             HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence                           122222222        23346899999999999999999865     22577889999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHH
Q 004249          280 DRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYY  359 (765)
Q Consensus       280 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  359 (765)
                      ++|+..+++++..    .|. ..++..+|.++...|++++|+..+++++... |.++.++..+|.++...|++++|+..|
T Consensus       260 ~~A~~~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~  333 (537)
T 3fp2_A          260 LDAQVLLQESINL----HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF  333 (537)
T ss_dssp             HHHHHHHHHHHHH----CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhc----CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            9999999999999    555 7889999999999999999999999998877 788999999999999999999999999


Q ss_pred             HHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccc
Q 004249          360 HMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKY  439 (765)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  439 (765)
                      ++++..  .|.++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|..
T Consensus       334 ~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  411 (537)
T 3fp2_A          334 QKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ  411 (537)
T ss_dssp             HHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence            999999  899999999999999999999999999999999999999999999999999999999999999999887765


Q ss_pred             cCcccchhhhhhhHHHHHHHHHHHhc----------chhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhh
Q 004249          440 VNSDKTHAWWLNIRIKIKLCRIYKAK----------GMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLH  509 (765)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~  509 (765)
                      .      ..+.....+..++.++...          |++++|+..+.+++.         .+|++..++..+|.++...|
T Consensus       412 ~------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---------~~p~~~~~~~~l~~~~~~~g  476 (537)
T 3fp2_A          412 E------KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE---------LDPRSEQAKIGLAQLKLQME  476 (537)
T ss_dssp             S------SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHHTT
T ss_pred             h------hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH---------hCCCCHHHHHHHHHHHHHhc
Confidence            1      1122234466778888888          889999988888886         56778888888888888888


Q ss_pred             cHHHHHHHHHHHHHhc
Q 004249          510 RYEDAIKIINLILKLG  525 (765)
Q Consensus       510 ~~~~A~~~~~~al~~~  525 (765)
                      ++++|+..|++++++.
T Consensus       477 ~~~~A~~~~~~al~~~  492 (537)
T 3fp2_A          477 KIDEAIELFEDSAILA  492 (537)
T ss_dssp             CHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHhC
Confidence            8888888888888887

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-35  Score=323.87  Aligned_cols=420  Identities=11%  Similarity=0.003  Sum_probs=348.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL  169 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  169 (765)
                      .+..++..|..++..|+|++|+..|++++..+| ++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   83 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN   83 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence            456788999999999999999999999999999 6899999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHH---HHH---------------------------
Q 004249          170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVY---RQM---------------------------  219 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~---~~a---------------------------  219 (765)
                      ...|++++|+..|++++...|.+...................+...+   +.+                           
T Consensus        84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
T 2gw1_A           84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS  163 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred             HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence            99999999999999999999866544333333322222122211111   100                           


Q ss_pred             -------HHh--------CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----c--CCCCC-----CHHHHHHH
Q 004249          220 -------VQL--------CPENIEALKMGAKLYQK---SGQIESSVDILEDYLK-----G--HPTEA-----DFGVIDLL  269 (765)
Q Consensus       220 -------l~~--------~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~-----~--~p~~~-----~~~~~~~l  269 (765)
                             ...        .|.+..++..+|.++..   .|++++|+..|++++.     .  .|++.     ...++..+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (514)
T 2gw1_A          164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT  243 (514)
T ss_dssp             HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence                   000        14457888899998887   8999999999999998     5  55542     13478899


Q ss_pred             HHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHcc
Q 004249          270 ASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNR  349 (765)
Q Consensus       270 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~  349 (765)
                      |.++...|++++|+..+++++..    .+. ..++..+|.++...|++++|+..+++++... |.++.++..+|.++...
T Consensus       244 ~~~~~~~~~~~~A~~~~~~~l~~----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  317 (514)
T 2gw1_A          244 GIFKFLKNDPLGAHEDIKKAIEL----FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFIL  317 (514)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHH----CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhh----Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999    555 8899999999999999999999999998876 77789999999999999


Q ss_pred             ccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhc
Q 004249          350 ELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLL  429 (765)
Q Consensus       350 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  429 (765)
                      |++++|+..|++++..  .|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+
T Consensus       318 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  395 (514)
T 2gw1_A          318 QNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY  395 (514)
T ss_dssp             TCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999999999  89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccCcccchhhhhhhHHHHHHHHHHHh---cchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHH
Q 004249          430 TPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKA---KGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLA  506 (765)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~  506 (765)
                      ++++...|....      ......++..+|.++..   .|++++|+..+.+++.         ..|++..++..+|.++.
T Consensus       396 ~~a~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~---------~~~~~~~~~~~la~~~~  460 (514)
T 2gw1_A          396 DLAIELENKLDG------IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK---------LDPRSEQAKIGLAQMKL  460 (514)
T ss_dssp             HHHHHHHHTSSS------CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhhhccch------HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH---------hCcccHHHHHHHHHHHH
Confidence            999887666510      00012367778888888   7888888888877775         45667777777777777


Q ss_pred             hhhcHHHHHHHHHHHHHhccCCCCchHHHHH
Q 004249          507 SLHRYEDAIKIINLILKLGYGKFPVEKEELY  537 (765)
Q Consensus       507 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  537 (765)
                      ..|++++|...|++++.+.    |.++..+.
T Consensus       461 ~~g~~~~A~~~~~~a~~~~----~~~~~~~~  487 (514)
T 2gw1_A          461 QQEDIDEAITLFEESADLA----RTMEEKLQ  487 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHHC----SSHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhc----cccHHHHH
Confidence            7788888888877777777    45444433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-35  Score=318.70  Aligned_cols=422  Identities=13%  Similarity=0.047  Sum_probs=358.9

Q ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 004249          124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLY  203 (765)
Q Consensus       124 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  203 (765)
                      .+.++..+|.+++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   83 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN   83 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence            357889999999999999999999999999999 6999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH---HHH---------------------------
Q 004249          204 VELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDIL---EDY---------------------------  253 (765)
Q Consensus       204 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~---~~~---------------------------  253 (765)
                      ...|++++|+..|++++...|.+......+...+........+...+   +.+                           
T Consensus        84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
T 2gw1_A           84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS  163 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred             HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence            99999999999999999999876443332222222211111111111   100                           


Q ss_pred             -------HhcCCC------CCCHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHh-------cCC---CCccHHHHHHH
Q 004249          254 -------LKGHPT------EADFGVIDLLASMLVQ---MNAYDRVLKHIELVDLVY-------YSG---KELLLALKIKA  307 (765)
Q Consensus       254 -------~~~~p~------~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~-------~~~---~~~~~~~~~~l  307 (765)
                             ....+.      ......+..+|.++..   .|++++|+..+++++..+       +..   .+....++..+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (514)
T 2gw1_A          164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT  243 (514)
T ss_dssp             HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence                   000000      0113466788888876   899999999999999831       111   14567788999


Q ss_pred             HHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhcc
Q 004249          308 GICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKE  387 (765)
Q Consensus       308 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  387 (765)
                      |.++...|++++|+..+++++... |. ..++..+|.++...|++++|+..+++++..  .|.++.++..+|.++...|+
T Consensus       244 ~~~~~~~~~~~~A~~~~~~~l~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~  319 (514)
T 2gw1_A          244 GIFKFLKNDPLGAHEDIKKAIELF-PR-VNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQN  319 (514)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhC-cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCC
Confidence            999999999999999999998877 55 999999999999999999999999999999  89999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcch
Q 004249          388 REKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGM  467 (765)
Q Consensus       388 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  467 (765)
                      +++|+..|+++++..|.+..++..+|.++...|++++|+..+++++...|..            ..++..+|.++...|+
T Consensus       320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~la~~~~~~~~  387 (514)
T 2gw1_A          320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA------------PEVPNFFAEILTDKND  387 (514)
T ss_dssp             TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC------------SHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC------------HHHHHHHHHHHHHCCC
Confidence            9999999999999999999999999999999999999999999999887776            5788899999999999


Q ss_pred             hHHHHHhhHHHHhhhcccccccChhhHHH------HHHHHHHHHHh---hhcHHHHHHHHHHHHHhccCCCCchHHHHHH
Q 004249          468 IEGFVDMLLPLVCESSHQEETFNHEEHRL------LIIDLCKTLAS---LHRYEDAIKIINLILKLGYGKFPVEKEELYF  538 (765)
Q Consensus       468 ~~~A~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~l~~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  538 (765)
                      +++|+..+.+++.         ..|.+..      ++..+|.++..   .|++++|+..|++++...    |.++..+..
T Consensus       388 ~~~A~~~~~~a~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~  454 (514)
T 2gw1_A          388 FDKALKQYDLAIE---------LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD----PRSEQAKIG  454 (514)
T ss_dssp             HHHHHHHHHHHHH---------HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred             HHHHHHHHHHHHH---------hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC----cccHHHHHH
Confidence            9999999999986         4455533      89999999999   999999999999999988    667777777


Q ss_pred             HHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHH
Q 004249          539 LGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYK  576 (765)
Q Consensus       539 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~  576 (765)
                      ++. ++...|++++|...|+++++.+|+++..+..+..
T Consensus       455 la~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  491 (514)
T 2gw1_A          455 LAQ-MKLQQEDIDEAITLFEESADLARTMEEKLQAITF  491 (514)
T ss_dssp             HHH-HHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred             HHH-HHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            777 9999999999999999999999999988876643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=3.5e-33  Score=299.66  Aligned_cols=323  Identities=15%  Similarity=0.099  Sum_probs=299.2

Q ss_pred             CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249           87 VCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIF  166 (765)
Q Consensus        87 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la  166 (765)
                      .|.++..++..|..++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+|
T Consensus        22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  101 (450)
T 2y4t_A           22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG  101 (450)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            35667788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHH------------HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004249          167 PWLIEQGDTTWAMSCLSEAVKADPNDF---KLKFHL------------ASLYVELGNFQRAADVYRQMVQLCPENIEALK  231 (765)
Q Consensus       167 ~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  231 (765)
                      .++...|++++|+..|++++..+|.+.   .++..+            |.++...|++++|+..|++++...|.++.++.
T Consensus       102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  181 (450)
T 2y4t_A          102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE  181 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            999999999999999999999999988   776655            66699999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHH----
Q 004249          232 MGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKA----  307 (765)
Q Consensus       232 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l----  307 (765)
                      .+|.+|...|++++|+..|+++++.+|.+..  ++..+|.++...|++++|+..|++++..    .|.....+..+    
T Consensus       182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~~~~~~  255 (450)
T 2y4t_A          182 LRAECFIKEGEPRKAISDLKAASKLKNDNTE--AFYKISTLYYQLGDHELSLSEVRECLKL----DQDHKRCFAHYKQVK  255 (450)
T ss_dssp             HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCChHHHHHHHHHHH
Confidence            9999999999999999999999999998865  7889999999999999999999999998    55555555444    


Q ss_pred             --------HHHHHhcCChhHHHHHHHhhcccCCCChH----HHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHH
Q 004249          308 --------GICHIQLGNTDKAEILLTAIHWENVSDHA----ESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLH  375 (765)
Q Consensus       308 --------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  375 (765)
                              |.++...|++++|+..|++++... |.++    ..+..+|.++...|++++|+..+++++..  .|+++.+|
T Consensus       256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~  332 (450)
T 2y4t_A          256 KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNAL  332 (450)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHH
Confidence                    899999999999999999998776 5553    47889999999999999999999999999  89999999


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004249          376 LKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLE  418 (765)
Q Consensus       376 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  418 (765)
                      ..+|.++...|++++|+..|+++++++|++..++..++.+...
T Consensus       333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  375 (450)
T 2y4t_A          333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL  375 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999966544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=1.9e-33  Score=301.84  Aligned_cols=334  Identities=15%  Similarity=0.107  Sum_probs=297.3

Q ss_pred             HHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004249          107 YEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAV  186 (765)
Q Consensus       107 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  186 (765)
                      ...+...+.+++..+|.++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++
T Consensus         8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   87 (450)
T 2y4t_A            8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI   87 (450)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            44566777888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHH
Q 004249          187 KADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI---EALKMG------------AKLYQKSGQIESSVDILE  251 (765)
Q Consensus       187 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~  251 (765)
                      +.+|+++.++..+|.++...|++++|+..|++++...|.+.   .++..+            |.++...|++++|+..|+
T Consensus        88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  167 (450)
T 2y4t_A           88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD  167 (450)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999988   776555            666999999999999999


Q ss_pred             HHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC
Q 004249          252 DYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN  331 (765)
Q Consensus       252 ~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  331 (765)
                      +++...|.+..  ++..+|.++...|++++|+..|++++..    .|....++..+|.++...|++++|+..|++++...
T Consensus       168 ~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  241 (450)
T 2y4t_A          168 KILEVCVWDAE--LRELRAECFIKEGEPRKAISDLKAASKL----KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD  241 (450)
T ss_dssp             HHHHHCTTCHH--HHHHHHHHHHHTTCGGGGHHHHHHHHHH----HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhCCCChH--HHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999998766  7889999999999999999999999999    66778999999999999999999999999998776


Q ss_pred             CCChHHHHHHH------------HHHHHccccHHHHHHHHHHHHhccCCCCCH----HHHHHHHHHHHHhccHHHHHHHH
Q 004249          332 VSDHAESINEI------------ADLFKNRELYSTALKYYHMLEANAGVHNDG----CLHLKIAECSLALKEREKSIIYF  395 (765)
Q Consensus       332 ~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~  395 (765)
                       |.+...+..+            |.++...|++++|+.+|++++..  .|.++    .++..+|.++...|++++|+..+
T Consensus       242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  318 (450)
T 2y4t_A          242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVC  318 (450)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence             6667766555            99999999999999999999998  88875    47889999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHH
Q 004249          396 YKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRI  461 (765)
Q Consensus       396 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  461 (765)
                      +++++.+|++..++..+|.++...|++++|+..++++++.+|..            ..++..++.+
T Consensus       319 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~  372 (450)
T 2y4t_A          319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND------------QQIREGLEKA  372 (450)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC------------HHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch------------HHHHHHHHHH
Confidence            99999999999999999999999999999999999999998887            4566666644

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=1.6e-32  Score=284.83  Aligned_cols=322  Identities=15%  Similarity=0.104  Sum_probs=298.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL  169 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  169 (765)
                      ++..++..|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|++..++..+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCC---CCHHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004249          170 IEQGDTTWAMSCLSEAVKADP---NDFKLKFHL------------ASLYVELGNFQRAADVYRQMVQLCPENIEALKMGA  234 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  234 (765)
                      ...|++++|+..|++++..+|   .++.++..+            |.++...|++++|+..++++++..|.++.++..+|
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  161 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA  161 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            999999999999999999999   888888777            79999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHH----------
Q 004249          235 KLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALK----------  304 (765)
Q Consensus       235 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------  304 (765)
                      .++...|++++|+..+++++...|.++.  ++..+|.++...|++++|+..+++++..    .|.....+          
T Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~  235 (359)
T 3ieg_A          162 ECFIKEGEPRKAISDLKAASKLKSDNTE--AFYKISTLYYQLGDHELSLSEVRECLKL----DQDHKRCFAHYKQVKKLN  235 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCSCCHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhh----CccchHHHHHHHHHHHHH
Confidence            9999999999999999999999998876  7889999999999999999999999998    44444433          


Q ss_pred             --HHHHHHHHhcCChhHHHHHHHhhcccCCCChH----HHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHH
Q 004249          305 --IKAGICHIQLGNTDKAEILLTAIHWENVSDHA----ESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKI  378 (765)
Q Consensus       305 --~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  378 (765)
                        ..+|.++...|++++|+..+++++... |.++    .++..+|.++...|++++|+..|++++..  .|+++.++..+
T Consensus       236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~  312 (359)
T 3ieg_A          236 KLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDR  312 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence              244888999999999999999998776 5554    34667999999999999999999999999  89999999999


Q ss_pred             HHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 004249          379 AECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDA  420 (765)
Q Consensus       379 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  420 (765)
                      |.++...|++++|+..|+++++.+|++..++..++.+....+
T Consensus       313 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  354 (359)
T 3ieg_A          313 AEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK  354 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998877654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=1.6e-31  Score=277.21  Aligned_cols=322  Identities=16%  Similarity=0.121  Sum_probs=295.7

Q ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 004249          124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLY  203 (765)
Q Consensus       124 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  203 (765)
                      +++.++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 004249          204 VELGNFQRAADVYRQMVQLCP---ENIEALKMG------------AKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDL  268 (765)
Q Consensus       204 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~  268 (765)
                      ...|++++|+..|+++++..|   +++.++..+            |.++...|++++|+..++++++..|.++.  ++..
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~  159 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAE--LREL  159 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH--HHHH
Confidence            999999999999999999999   888888777            79999999999999999999999998865  7889


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHH--------
Q 004249          269 LASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESIN--------  340 (765)
Q Consensus       269 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--------  340 (765)
                      +|.++...|++++|+..+++++..    .|....++..+|.++...|++++|+..+++++... |.+...+.        
T Consensus       160 ~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~  234 (359)
T 3ieg_A          160 RAECFIKEGEPRKAISDLKAASKL----KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL  234 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTT----CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHH
Confidence            999999999999999999999998    77888999999999999999999999999998776 66665443        


Q ss_pred             ----HHHHHHHccccHHHHHHHHHHHHhccCCCCCHH----HHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHH
Q 004249          341 ----EIADLFKNRELYSTALKYYHMLEANAGVHNDGC----LHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTL  412 (765)
Q Consensus       341 ----~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  412 (765)
                          .+|.++...|++++|+..+++++..  .|+++.    ++..+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus       235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  312 (359)
T 3ieg_A          235 NKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR  312 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence                4488899999999999999999998  788874    466799999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcc
Q 004249          413 ASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKG  466 (765)
Q Consensus       413 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  466 (765)
                      |.++...|++++|+..++++++.+|+.            ..++..++.+....+
T Consensus       313 ~~~~~~~g~~~~A~~~~~~a~~~~p~~------------~~~~~~l~~~~~~~~  354 (359)
T 3ieg_A          313 AEAYLIEEMYDEAIQDYEAAQEHNEND------------QQIREGLEKAQRLLK  354 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTC------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCC------------hHHHHHHHHHHHHHH
Confidence            999999999999999999999999887            455556665554433

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=3e-31  Score=286.46  Aligned_cols=395  Identities=13%  Similarity=-0.037  Sum_probs=259.4

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----
Q 004249          194 KLKFHLASLYVELGNFQRAADVYRQMVQL---------CPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPT-----  259 (765)
Q Consensus       194 ~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-----  259 (765)
                      ..+..+|.++..+|++++|++.|++++++         +|....++.++|.+|..+|++++|+.++++++++.+.     
T Consensus        52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~  131 (472)
T 4g1t_A           52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY  131 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence            44555666666666666666666666554         3444555666666666666666666666666554221     


Q ss_pred             CC-CHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH---hcCChhHHHHHHHhhcccCCC
Q 004249          260 EA-DFGVIDLLASMLVQM--NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHI---QLGNTDKAEILLTAIHWENVS  333 (765)
Q Consensus       260 ~~-~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~  333 (765)
                      .. ...++..+|.++...  +++++|+.+|++++..    .|....++..++.++.   ..++.++|+..+++++... |
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~----~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p  206 (472)
T 4g1t_A          132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK----KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P  206 (472)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred             chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence            11 123445555554443  4567777777777776    5556666666665533   3466677777777777665 6


Q ss_pred             ChHHHHHHHHHHHH----ccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHH
Q 004249          334 DHAESINEIADLFK----NRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDAR  409 (765)
Q Consensus       334 ~~~~~~~~la~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  409 (765)
                      .++.++..+|..+.    ..|++++|+.++++++..  .|.++.++..+|.++...|++++|+..|+++++.+|++..++
T Consensus       207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  284 (472)
T 4g1t_A          207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH  284 (472)
T ss_dssp             SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHH
Confidence            66777777765543    456788999999999998  899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhccccccc
Q 004249          410 LTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETF  489 (765)
Q Consensus       410 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~  489 (765)
                      ..+|.+|...+....+....                           ..+......+.+++|+..+.+++.         
T Consensus       285 ~~lg~~y~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~A~~~~~~a~~---------  328 (472)
T 4g1t_A          285 CQIGCCYRAKVFQVMNLREN---------------------------GMYGKRKLLELIGHAVAHLKKADE---------  328 (472)
T ss_dssp             HHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHHhhhHHHH---------------------------HHHHHHHHHhhHHHHHHHHHHHhh---------
Confidence            99999987654333322111                           112222334457888888888876         


Q ss_pred             ChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHH-HHHHHHhhcccccCChhhHHHHHHHHHHhCCCch
Q 004249          490 NHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKE-ELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRL  568 (765)
Q Consensus       490 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~  568 (765)
                      .+|.+..++..+|.++...|++++|+..|++++.+.+.  +.... ....++....+..|++++|+..|+++++..|++.
T Consensus       329 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~  406 (472)
T 4g1t_A          329 ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT--PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR  406 (472)
T ss_dssp             HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred             cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence            56788888999999999999999999999999998732  22222 2344444355688999999999999999999986


Q ss_pred             hhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHH
Q 004249          569 TTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVG  644 (765)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~  644 (765)
                      .....+           ....+.+.+.+..+|+++.++..+|.++...|++++|+.+|++|+++.|.+|.+...+|
T Consensus       407 ~~~~~~-----------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G  471 (472)
T 4g1t_A          407 EKEKMK-----------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG  471 (472)
T ss_dssp             HHHHHH-----------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred             HHHHHH-----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence            543322           24456667788899999999999999999999999999999999999999998776555

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.5e-31  Score=285.09  Aligned_cols=391  Identities=14%  Similarity=0.019  Sum_probs=196.8

Q ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHhcc---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Q 004249          125 PNSYHILGLVHDALGNTAKAMGCYWLAACY---------KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA-------  188 (765)
Q Consensus       125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------  188 (765)
                      ...+..+|.++..+|++++|+++|++++++         +|....+|.++|.+|..+|++++|+.++++++.+       
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            455666777777777777777777776654         4555566677777777777777777777776654       


Q ss_pred             -CCCCHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCCC
Q 004249          189 -DPNDFKLKFHLASLYVEL--GNFQRAADVYRQMVQLCPENIEALKMGAKLYQK---SGQIESSVDILEDYLKGHPTEAD  262 (765)
Q Consensus       189 -~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~p~~~~  262 (765)
                       .+..+.++..+|.++...  +++++|+.+|+++++++|+++.++..++.++..   .++.++|+..++++++.+|++..
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~  210 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY  210 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence             234456666666655544  356777777777777777777776666666443   45566677777777777776654


Q ss_pred             HHHHHHHHHHHH----HhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHH
Q 004249          263 FGVIDLLASMLV----QMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAES  338 (765)
Q Consensus       263 ~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  338 (765)
                        ++..+|..+.    ..|++++|+..+++++..    .|....++..+|.++...|++++|+..+++++... |+++.+
T Consensus       211 --~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~  283 (472)
T 4g1t_A          211 --LKVLLALKLHKMREEGEEEGEGEKLVEEALEK----APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL  283 (472)
T ss_dssp             --HHHHHHHHHHHCC------CHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred             --HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh----CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence              3444544433    334566666666666666    55566666666666666666666666666666555 556666


Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004249          339 INEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLE  418 (765)
Q Consensus       339 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  418 (765)
                      +..+|.+|...+....+..                 ....+......+.+++|+..|+++++.+|.+..++..+|.++..
T Consensus       284 ~~~lg~~y~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~  346 (472)
T 4g1t_A          284 HCQIGCCYRAKVFQVMNLR-----------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL  346 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHH-----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH
Confidence            6666665543221110000                 00111112222334455555555555555555555555555555


Q ss_pred             cCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHH-HHhcchhHHHHHhhHHHHhhhcccccccChhhHHHH
Q 004249          419 DAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRI-YKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLL  497 (765)
Q Consensus       419 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~  497 (765)
                      .|++++|+.+|+++++.++...         ....++..++.+ +...|++++|+..|.+++.         ..|++...
T Consensus       347 ~~~~~~A~~~~~kaL~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---------i~~~~~~~  408 (472)
T 4g1t_A          347 ADQYEEAEYYFQKEFSKELTPV---------AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---------INQKSREK  408 (472)
T ss_dssp             TTCHHHHHHHHHHHHHSCCCHH---------HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---------SCCCCHHH
T ss_pred             hccHHHHHHHHHHHHhcCCCCh---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---------cCcccHHH
Confidence            5555555555555544433320         001122233322 2344555555555555543         22222211


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhH
Q 004249          498 IIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWN  572 (765)
Q Consensus       498 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  572 (765)
                                .+....+..++++++...    |.++..+..+|. ++...|++++|+++|+++++..|.+|.++.
T Consensus       409 ----------~~~~~~l~~~~~~~l~~~----p~~~~~~~~LG~-~~~~~g~~~~A~~~y~kALe~~~~~p~a~~  468 (472)
T 4g1t_A          409 ----------EKMKDKLQKIAKMRLSKN----GADSEALHVLAF-LQELNEKMQQADEDSERGLESGSLIPSASS  468 (472)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHC----C-CTTHHHHHHH-HHHHHHHCC---------------------
T ss_pred             ----------HHHHHHHHHHHHHHHHhC----CCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence                      112223334444555544    444444444444 555555555555555555555555554443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.98  E-value=3.8e-30  Score=263.53  Aligned_cols=299  Identities=12%  Similarity=0.053  Sum_probs=251.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI  170 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  170 (765)
                      ...++..|..++..|++++|+..|++++..+|.+..++..++.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus        22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  101 (330)
T 3hym_B           22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL  101 (330)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            34557778888888999999999999988888888888888888888899999999999988888888888888998888


Q ss_pred             HcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004249          171 EQG-DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDI  249 (765)
Q Consensus       171 ~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  249 (765)
                      ..| ++++|+.+|++++..+|.++.++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..
T Consensus       102 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  181 (330)
T 3hym_B          102 MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF  181 (330)
T ss_dssp             HSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHH
Confidence            888 8888999999998888888888888999999999999999999999888888888888888888889999999999


Q ss_pred             HHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcc
Q 004249          250 LEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHW  329 (765)
Q Consensus       250 ~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  329 (765)
                      +++++...|.+..  ++..+|.++...|++++|+..+++++...+....                              .
T Consensus       182 ~~~al~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------------------~  229 (330)
T 3hym_B          182 FSQALSIAPEDPF--VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN------------------------------E  229 (330)
T ss_dssp             HHHHHTTCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC------------------------------S
T ss_pred             HHHHHHhCCCChH--HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc------------------------------c
Confidence            9988888888755  6778888888888888888888888877322110                              0


Q ss_pred             cCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHH
Q 004249          330 ENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDAR  409 (765)
Q Consensus       330 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  409 (765)
                      ...+..+.++..+|.++...|++++|+.+|++++..  .|+++.++..+|.++...|++++|+.+|+++++.+|++..++
T Consensus       230 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  307 (330)
T 3hym_B          230 VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV  307 (330)
T ss_dssp             CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence            112445678888888888899999999999998888  788888999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HHcCCHH
Q 004249          410 LTLASLL-LEDAKDE  423 (765)
Q Consensus       410 ~~l~~~~-~~~g~~~  423 (765)
                      ..++.++ ...|+.+
T Consensus       308 ~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          308 TMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHHhCchh
Confidence            9999888 4556543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.97  E-value=5.1e-30  Score=262.55  Aligned_cols=255  Identities=13%  Similarity=0.064  Sum_probs=223.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 004249           93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALG-NTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE  171 (765)
Q Consensus        93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  171 (765)
                      .+...+.+++..|++++|+..+++++..+|.++.++..+|.++...| ++++|+.+|++++..+|.++.++..+|.++..
T Consensus        58 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  137 (330)
T 3hym_B           58 CLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV  137 (330)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            34456788899999999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004249          172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILE  251 (765)
Q Consensus       172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  251 (765)
                      .|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++
T Consensus       138 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  217 (330)
T 3hym_B          138 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFL  217 (330)
T ss_dssp             HTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCC-------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHH
Q 004249          252 DYLKGHPTE-------ADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILL  324 (765)
Q Consensus       252 ~~~~~~p~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  324 (765)
                      +++...|..       ....++..+|.++...|++++|+..+++++..    .|....++..+|.++...|++++|+..+
T Consensus       218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~  293 (330)
T 3hym_B          218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL----IPQNASTYSAIGYIHSLMGNFENAVDYF  293 (330)
T ss_dssp             HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh----CccchHHHHHHHHHHHHhccHHHHHHHH
Confidence            999987431       11237788999999999999999999999888    5566677777777777777777777777


Q ss_pred             HhhcccCCCChHHHHHHHHHHH-HccccH
Q 004249          325 TAIHWENVSDHAESINEIADLF-KNRELY  352 (765)
Q Consensus       325 ~~~~~~~~~~~~~~~~~la~~~-~~~g~~  352 (765)
                      ++++... |+++.++..++.++ ...|+.
T Consensus       294 ~~al~~~-p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          294 HTALGLR-RDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             HTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred             HHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence            7776655 66677777777766 444443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.97  E-value=1.3e-29  Score=263.99  Aligned_cols=313  Identities=17%  Similarity=0.113  Sum_probs=242.4

Q ss_pred             cCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHH-HHHHHhccCCCCH----HHHHHHHHHHHHcCCHHHH
Q 004249          104 LGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMG-CYWLAACYKQKDS----SLWKLIFPWLIEQGDTTWA  178 (765)
Q Consensus       104 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~a~~~~p~~~----~~~~~la~~~~~~g~~~~A  178 (765)
                      .+.++.+...++.+....|.          ++...|++++|+. .|.+++...|.++    ..++.+|.++...|++++|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A   83 (368)
T 1fch_A           14 VDFWDKLQAELEEMAKRDAE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNA   83 (368)
T ss_dssp             ------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHH
T ss_pred             cccHHHHHHHHHHHHcCCch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHH
Confidence            34444444445444444332          4455677888887 8888877777654    4577788888888888888


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004249          179 MSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHP  258 (765)
Q Consensus       179 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  258 (765)
                      +..|++++..+|.++.++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..+++++...|
T Consensus        84 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  163 (368)
T 1fch_A           84 VLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP  163 (368)
T ss_dssp             HHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888877


Q ss_pred             CCCCHHHHH--------------HHHHHHHHhccHHHHHHHHHHHHHHhcCCCCc--cHHHHHHHHHHHHhcCChhHHHH
Q 004249          259 TEADFGVID--------------LLASMLVQMNAYDRVLKHIELVDLVYYSGKEL--LLALKIKAGICHIQLGNTDKAEI  322 (765)
Q Consensus       259 ~~~~~~~~~--------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~  322 (765)
                      .+.......              .++.++ ..|++++|+..+++++..    .|.  ...++..+|.++...|++++|+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~l~~~~~~~g~~~~A~~  238 (368)
T 1fch_A          164 AYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL----DPTSIDPDVQCGLGVLFNLSGEYDKAVD  238 (368)
T ss_dssp             TTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHH----STTSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh----CcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            765521111              466666 999999999999999998    555  68889999999999999999999


Q ss_pred             HHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc
Q 004249          323 LLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL  402 (765)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  402 (765)
                      .+++++... |.++.++..+|.++...|++++|+..|++++..  .|+++.++..+|.++...|++++|+..|+++++..
T Consensus       239 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  315 (368)
T 1fch_A          239 CFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ  315 (368)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            999998876 778999999999999999999999999999999  89999999999999999999999999999999999


Q ss_pred             CCC-----------HHHHHHHHHHHHHcCCHHHHHHhcCCCCC
Q 004249          403 EDN-----------IDARLTLASLLLEDAKDEEAISLLTPPMS  434 (765)
Q Consensus       403 p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  434 (765)
                      |++           ..++..++.++...|++++|..+++++++
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  358 (368)
T 1fch_A          316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS  358 (368)
T ss_dssp             HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred             CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence            988           89999999999999999999999987765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.97  E-value=1.2e-27  Score=261.46  Aligned_cols=427  Identities=9%  Similarity=-0.018  Sum_probs=327.7

Q ss_pred             HHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 004249          114 LHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF  193 (765)
Q Consensus       114 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  193 (765)
                      |+++++.+|.+..+|..++.. ...|++++|...|++++...|.+..+|..++..+...|++++|...|++++...| +.
T Consensus         2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~   79 (530)
T 2ooe_A            2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI   79 (530)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred             hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence            678899999999999999984 7889999999999999999999999999999999999999999999999999999 68


Q ss_pred             HHHHHHHHH-HHHhCCHHHHHH----HHHHHHHh---CCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhc
Q 004249          194 KLKFHLASL-YVELGNFQRAAD----VYRQMVQL---CPENIEALKMGAKLYQK---------SGQIESSVDILEDYLKG  256 (765)
Q Consensus       194 ~~~~~la~~-~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~~~~  256 (765)
                      ..|..++.. ....|+++.|.+    .|++++..   +|.+..+|...+.....         .|+++.|..+|++++. 
T Consensus        80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-  158 (530)
T 2ooe_A           80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-  158 (530)
T ss_dssp             HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-
Confidence            888888854 445677777665    78887764   45677888888887765         7899999999999999 


Q ss_pred             CCCCCCHHHHHHHHHHH-------------HHhccHHHHHHHHHHHHHH---hcC----CCCc-------cHHHHHHHHH
Q 004249          257 HPTEADFGVIDLLASML-------------VQMNAYDRVLKHIELVDLV---YYS----GKEL-------LLALKIKAGI  309 (765)
Q Consensus       257 ~p~~~~~~~~~~l~~~~-------------~~~~~~~~A~~~~~~~~~~---~~~----~~~~-------~~~~~~~l~~  309 (765)
                      .|.......|...+...             ...+++..|...+......   +..    -.|.       ....+.....
T Consensus       159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~  238 (530)
T 2ooe_A          159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ  238 (530)
T ss_dssp             SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence            57654322333333221             1346677787776653221   111    0111       1233333332


Q ss_pred             HHHh----cCCh----hHHHHHHHhhcccCCCChHHHHHHHHHHHHc-------cccHH-------HHHHHHHHHHh-cc
Q 004249          310 CHIQ----LGNT----DKAEILLTAIHWENVSDHAESINEIADLFKN-------RELYS-------TALKYYHMLEA-NA  366 (765)
Q Consensus       310 ~~~~----~~~~----~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~~~~-~~  366 (765)
                      ....    .++.    ..++..|++++... |.++.+|..+|..+..       .|+++       +|+..|++++. . 
T Consensus       239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~-  316 (530)
T 2ooe_A          239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-  316 (530)
T ss_dssp             HHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT-
T ss_pred             HHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh-
Confidence            2221    1232    37778899988776 7889999999998875       68876       89999999997 6 


Q ss_pred             CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccc
Q 004249          367 GVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNI-DARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKT  445 (765)
Q Consensus       367 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  445 (765)
                       .|+++.+|..+|.++...|++++|...|+++++..|.++ .+|..++.++.+.|++++|..+|+++++..|..      
T Consensus       317 -~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~------  389 (530)
T 2ooe_A          317 -LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR------  389 (530)
T ss_dssp             -CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC------
T ss_pred             -CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc------
Confidence             789999999999999999999999999999999999885 589999999999999999999999998876543      


Q ss_pred             hhhhhhhHHHHHHHHH-HHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHh
Q 004249          446 HAWWLNIRIKIKLCRI-YKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKL  524 (765)
Q Consensus       446 ~~~~~~~~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  524 (765)
                            ..++...+.+ +...|++++|...|.+++.         ..|+++.++..++..+...|++++|..+|++++..
T Consensus       390 ------~~~~~~~a~~~~~~~~~~~~A~~~~e~al~---------~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          390 ------HHVYVTAALMEYYCSKDKSVAFKIFELGLK---------KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             ------THHHHHHHHHHHHHTCCHHHHHHHHHHHHH---------HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred             ------hHHHHHHHHHHHHHcCChhHHHHHHHHHHH---------HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence                  2344444444 3458899999999999886         56888899999999999999999999999999987


Q ss_pred             ccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCch
Q 004249          525 GYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRL  568 (765)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~  568 (765)
                      .+. .|.....++..........|+.+.+..+++++++..|++.
T Consensus       455 ~~~-~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~  497 (530)
T 2ooe_A          455 GSL-PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  497 (530)
T ss_dssp             CCS-CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred             cCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence            632 1333344444434366678999999999999999988643

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.97  E-value=1.8e-26  Score=249.35  Aligned_cols=403  Identities=9%  Similarity=-0.022  Sum_probs=334.4

Q ss_pred             HHHHHHHHHHhhCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 004249          110 AISVLHEVIRLEEELPNSYHILGLVHDA----LGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE----QGDTTWAMSC  181 (765)
Q Consensus       110 A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~  181 (765)
                      ++..++++.  .+.++.+++.+|.+|..    .+++++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.+
T Consensus        26 ~~~~~~~~a--~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  101 (490)
T 2xm6_A           26 NLEQLKQKA--ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIW  101 (490)
T ss_dssp             CHHHHHHHH--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            345555543  46788999999999998    89999999999999875  678999999999999    9999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 004249          182 LSEAVKADPNDFKLKFHLASLYVE----LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK----SGQIESSVDILEDY  253 (765)
Q Consensus       182 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~  253 (765)
                      |+++.+.  .++.+++.+|.+|..    .+++++|+.+|+++...  .++.++..+|.+|..    .+++++|+.+|+++
T Consensus       102 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a  177 (490)
T 2xm6_A          102 YKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA  177 (490)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            9999874  588999999999998    88999999999999875  578999999999998    88999999999999


Q ss_pred             HhcCCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh----cCChhHHHHHHH
Q 004249          254 LKGHPTEADFGVIDLLASMLVQ----MNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQ----LGNTDKAEILLT  325 (765)
Q Consensus       254 ~~~~p~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~  325 (765)
                      ++..  +  ..++..+|.+|..    .+++++|+.+|+++...      ....+...+|.++..    .+++++|+.+|+
T Consensus       178 ~~~~--~--~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~  247 (490)
T 2xm6_A          178 AEQG--N--VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS------GDELGQLHLADMYYFGIGVTQDYTQSRVLFS  247 (490)
T ss_dssp             HHTT--C--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHCC--C--HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            8863  3  3478899999998    89999999999999875      356788899999987    889999999999


Q ss_pred             hhcccCCCChHHHHHHHHHHHHc----cccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHh-----ccHHHHHHHHH
Q 004249          326 AIHWENVSDHAESINEIADLFKN----RELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLAL-----KEREKSIIYFY  396 (765)
Q Consensus       326 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~  396 (765)
                      ++...   .++.+++.+|.++..    .+++++|+.+|+++.+.    .++.+++.+|.+|...     +++++|+.+|+
T Consensus       248 ~a~~~---~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~  320 (490)
T 2xm6_A          248 QSAEQ---GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ----GNSDGQYYLAHLYDKGAEGVAKNREQAISWYT  320 (490)
T ss_dssp             HHHTT---TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred             HHHHC---CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence            98754   457889999999988    89999999999998754    5788999999999998     89999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcC---CHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHh----cchhH
Q 004249          397 KALQILEDNIDARLTLASLLLEDA---KDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKA----KGMIE  469 (765)
Q Consensus       397 ~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~  469 (765)
                      ++++.  .++.+++.+|.++...|   ++++|+.+|+++.+..  .            +.+++.+|.+|..    .++++
T Consensus       321 ~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~--~------------~~a~~~Lg~~y~~g~g~~~~~~  384 (490)
T 2xm6_A          321 KSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG--E------------KAAQFNLGNALLQGKGVKKDEQ  384 (490)
T ss_dssp             HHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--C------------HHHHHHHHHHHHHTSSSCCCHH
T ss_pred             HHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--C------------HHHHHHHHHHHHcCCCCCCCHH
Confidence            99875  56789999999998876   7889999998887652  1            4678889999988    88999


Q ss_pred             HHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHh----hhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhccc
Q 004249          470 GFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLAS----LHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPC  545 (765)
Q Consensus       470 ~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  545 (765)
                      +|+..+.+++.           ..++.++..+|.+|..    .+++++|..+|++++...+. .|.++.....++. ++.
T Consensus       385 ~A~~~~~~A~~-----------~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~-~~~~~~a~~~l~~-~~~  451 (490)
T 2xm6_A          385 QAAIWMRKAAE-----------QGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN-LFGTENRNITEKK-LTA  451 (490)
T ss_dssp             HHHHHHHHHHH-----------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHTT-SCH
T ss_pred             HHHHHHHHHHh-----------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC-CcCCHHHHHHHHh-cCH
Confidence            99999988874           2357788999999988    78999999999999988732 0224555555544 433


Q ss_pred             ccCChhhHHHHHHHHHHhCCCch
Q 004249          546 NTTDPKLWFDGVRFMVKLHPHRL  568 (765)
Q Consensus       546 ~~g~~~~A~~~~~~~l~~~p~~~  568 (765)
                        .+...|....++.++..|++.
T Consensus       452 --~~~~~a~~~a~~~~~~~~~~~  472 (490)
T 2xm6_A          452 --KQLQQAELLSQQYIEKYAPEA  472 (490)
T ss_dssp             --HHHHHHHHHHHHHHHHHCHHH
T ss_pred             --hHHHHHHHHHHHHHHHHHHHH
Confidence              355666667777777666543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.97  E-value=1.4e-26  Score=250.21  Aligned_cols=386  Identities=13%  Similarity=0.046  Sum_probs=333.8

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCHHHH
Q 004249           91 IRRMLGDASLHYA----LGRYEEAISVLHEVIRLEEELPNSYHILGLVHDA----LGNTAKAMGCYWLAACYKQKDSSLW  162 (765)
Q Consensus        91 ~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~  162 (765)
                      ....+..|..+..    .+++++|+..|+++.+.  .++.+++.+|.+|..    .+++++|+.+|+++.+.  .++.++
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~  114 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQ  114 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence            3455666788888    89999999999999876  678999999999999    99999999999999875  588999


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004249          163 KLIFPWLIE----QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE----LGNFQRAADVYRQMVQLCPENIEALKMGA  234 (765)
Q Consensus       163 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la  234 (765)
                      +.+|.+|..    .+++++|+.+|+++...  .++.+++.+|.+|..    .+++++|+.+|+++.+.  .++.++..+|
T Consensus       115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg  190 (490)
T 2xm6_A          115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLG  190 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence            999999999    89999999999999874  689999999999998    88999999999999886  5789999999


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHhcCCCCccHHHHHH
Q 004249          235 KLYQK----SGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQ----MNAYDRVLKHIELVDLVYYSGKELLLALKIK  306 (765)
Q Consensus       235 ~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  306 (765)
                      .+|..    .+++++|+.+|+++.+..  +  ..++..+|.++..    .+++++|+.+|+++...      ....+.+.
T Consensus       191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~--~--~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~  260 (490)
T 2xm6_A          191 YMYSRGLGVERNDAISAQWYRKSATSG--D--ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ------GNSIAQFR  260 (490)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT--C--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT------TCHHHHHH
T ss_pred             HHHhcCCCCCcCHHHHHHHHHHHHHCC--C--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHH
Confidence            99998    899999999999999864  2  3378899999997    89999999999999865      45678899


Q ss_pred             HHHHHHh----cCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHcc-----ccHHHHHHHHHHHHhccCCCCCHHHHHH
Q 004249          307 AGICHIQ----LGNTDKAEILLTAIHWENVSDHAESINEIADLFKNR-----ELYSTALKYYHMLEANAGVHNDGCLHLK  377 (765)
Q Consensus       307 l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~  377 (765)
                      +|.++..    .+++++|+.+|+++...   .++.+++.+|.++...     +++++|+.+|+++.+.    .++.+++.
T Consensus       261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~  333 (490)
T 2xm6_A          261 LGYILEQGLAGAKEPLKALEWYRKSAEQ---GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQAN  333 (490)
T ss_dssp             HHHHHHHTTTSSCCHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHH
T ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHH
Confidence            9999998    89999999999998753   4678999999999887     9999999999999865    46789999


Q ss_pred             HHHHHHHhc---cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHhcCCCCCccccccCcccchhhhh
Q 004249          378 IAECSLALK---EREKSIIYFYKALQILEDNIDARLTLASLLLE----DAKDEEAISLLTPPMSLENKYVNSDKTHAWWL  450 (765)
Q Consensus       378 la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  450 (765)
                      +|.+|...|   ++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++.+...             
T Consensus       334 lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-------------  398 (490)
T 2xm6_A          334 LGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL-------------  398 (490)
T ss_dssp             HHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------------
T ss_pred             HHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC-------------
Confidence            999999866   899999999999986  679999999999999    8999999999999887432             


Q ss_pred             hhHHHHHHHHHHHh----cchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhc
Q 004249          451 NIRIKIKLCRIYKA----KGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLG  525 (765)
Q Consensus       451 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  525 (765)
                       +.+++.+|.+|..    .+++++|+..|.+++....      ..|.++.+...++.++..  +.+.|.+..++.++..
T Consensus       399 -~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~------~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~  468 (490)
T 2xm6_A          399 -SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM------NLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKY  468 (490)
T ss_dssp             -HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC------CHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC------CCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHH
Confidence             4678899999998    8999999999999986320      116688888888887654  4455555555555544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.97  E-value=6.4e-29  Score=258.70  Aligned_cols=294  Identities=15%  Similarity=0.088  Sum_probs=263.1

Q ss_pred             HHHHcCCHHHHHH-HHHHHHHhhCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Q 004249          100 LHYALGRYEEAIS-VLHEVIRLEEELP----NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGD  174 (765)
Q Consensus       100 ~~~~~g~~~~A~~-~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~  174 (765)
                      ++...|+|++|+. .|++++...|.++    ..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|+
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence            4566799999999 9999998888764    6799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHH
Q 004249          175 TTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK----------------MGAKLYQ  238 (765)
Q Consensus       175 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------------~la~~~~  238 (765)
                      +++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.+...+.                .++.++ 
T Consensus       114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  192 (368)
T 1fch_A          114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-  192 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence            999999999999999999999999999999999999999999999999999876654                466666 


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChh
Q 004249          239 KSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTD  318 (765)
Q Consensus       239 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  318 (765)
                      ..|++++|+..+++++...|......++..+|.++...|++++|+..+++++..    .|....++..+|.++...|+++
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~  268 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV----RPNDYLLWNKLGATLANGNQSE  268 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999655558889999999999999999999999999    6778889999999999999999


Q ss_pred             HHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCC-----------HHHHHHHHHHHHHhcc
Q 004249          319 KAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHND-----------GCLHLKIAECSLALKE  387 (765)
Q Consensus       319 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~la~~~~~~g~  387 (765)
                      +|+..|++++... |.++.++..+|.++...|++++|+.+|++++..  .|++           +.+|..+|.++...|+
T Consensus       269 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  345 (368)
T 1fch_A          269 EAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQ  345 (368)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence            9999999998876 788999999999999999999999999999998  6766           8999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 004249          388 REKSIIYFYKALQI  401 (765)
Q Consensus       388 ~~~A~~~~~~al~~  401 (765)
                      +++|..+++++++.
T Consensus       346 ~~~A~~~~~~~l~~  359 (368)
T 1fch_A          346 SDAYGAADARDLST  359 (368)
T ss_dssp             GGGHHHHHTTCHHH
T ss_pred             hHhHHHhHHHHHHH
Confidence            99999999887765

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.96  E-value=1.1e-27  Score=248.96  Aligned_cols=283  Identities=14%  Similarity=0.062  Sum_probs=240.7

Q ss_pred             HHHHHHhccCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004249          146 GCYWLAACYKQKDS----SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQ  221 (765)
Q Consensus       146 ~~~~~a~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  221 (765)
                      ..+.+.....+.++    ..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  127 (365)
T 4eqf_A           48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE  127 (365)
T ss_dssp             -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            44555555555444    44888999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHH--------HHHHHHHHHHHhccHHHHHHHHHHHHHHh
Q 004249          222 LCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFG--------VIDLLASMLVQMNAYDRVLKHIELVDLVY  293 (765)
Q Consensus       222 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  293 (765)
                      .+|+++.++..+|.+|...|++++|+..++++++..|.+....        .+..+|.++...|++++|+..+++++.. 
T Consensus       128 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-  206 (365)
T 4eqf_A          128 LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ-  206 (365)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH-
T ss_pred             cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-
Confidence            9999999999999999999999999999999999888755411        2234589999999999999999999999 


Q ss_pred             cCCCCc--cHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCC
Q 004249          294 YSGKEL--LLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHND  371 (765)
Q Consensus       294 ~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  371 (765)
                         .|.  ...++..+|.++...|++++|+..|++++... |.++.++..+|.++...|++++|+..|++++..  .|++
T Consensus       207 ---~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~  280 (365)
T 4eqf_A          207 ---NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGF  280 (365)
T ss_dssp             ---SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred             ---CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCc
Confidence               555  77889999999999999999999999998877 778999999999999999999999999999999  8999


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCC------------HHHHHHHHHHHHHcCCHHHHHHhcCCCCCc
Q 004249          372 GCLHLKIAECSLALKEREKSIIYFYKALQILEDN------------IDARLTLASLLLEDAKDEEAISLLTPPMSL  435 (765)
Q Consensus       372 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  435 (765)
                      +.++..+|.++...|++++|+..|++++++.|+.            ..+|..++.++...|+.+.+....++.++.
T Consensus       281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~  356 (365)
T 4eqf_A          281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDV  356 (365)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGG
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHH
Confidence            9999999999999999999999999999999873            578899999999999999999998876553

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.96  E-value=1.1e-25  Score=245.95  Aligned_cols=436  Identities=10%  Similarity=-0.006  Sum_probs=327.9

Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 004249          148 YWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI  227 (765)
Q Consensus       148 ~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  227 (765)
                      ++++++.+|.+..+|..++.. ...|++++|...|++++..+|.+..+|..++..+...|++++|...|++++...| +.
T Consensus         2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~   79 (530)
T 2ooe_A            2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI   79 (530)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred             hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence            678889999999999999984 7899999999999999999999999999999999999999999999999999999 67


Q ss_pred             HHHHHHHH-HHHHcCCHHHHHH----HHHHHHhcCCCCC-CHHHHHHHHHHHHH---------hccHHHHHHHHHHHHHH
Q 004249          228 EALKMGAK-LYQKSGQIESSVD----ILEDYLKGHPTEA-DFGVIDLLASMLVQ---------MNAYDRVLKHIELVDLV  292 (765)
Q Consensus       228 ~~~~~la~-~~~~~g~~~~A~~----~~~~~~~~~p~~~-~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~  292 (765)
                      ..|..++. +....|++++|.+    .|++++...+.++ ...+|..++.....         .|+++.|..+|++++..
T Consensus        80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~  159 (530)
T 2ooe_A           80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN  159 (530)
T ss_dssp             HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc
Confidence            78888875 4456788877765    7777776533222 24477788887765         78899999999999874


Q ss_pred             hcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHH------HHhcc
Q 004249          293 YYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHM------LEANA  366 (765)
Q Consensus       293 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------~~~~~  366 (765)
                       |.  ......+..........|. ..+..                     .+....+++..|...+..      .+...
T Consensus       160 -P~--~~~~~~~~~~~~~e~~~~~-~~~~~---------------------~l~~~~~~~~~A~~~~~~~~~~~~~l~~~  214 (530)
T 2ooe_A          160 -PM--INIEQLWRDYNKYEEGINI-HLAKK---------------------MIEDRSRDYMNARRVAKEYETVMKGLDRN  214 (530)
T ss_dssp             -CC--TTHHHHHHHHHHHHHHHCH-HHHHH---------------------HHHTTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred             -hh--hhHHHHHHHHHHHHHhhch-hHHHH---------------------HHHHhhHHHHHHHHHHHHHHHHHHHhccc
Confidence             21  1112222222221111110 00000                     011234567777766665      33211


Q ss_pred             ---CCCCC-------HHHHHHHHHHHHHh----cc----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-------cCC
Q 004249          367 ---GVHND-------GCLHLKIAECSLAL----KE----REKSIIYFYKALQILEDNIDARLTLASLLLE-------DAK  421 (765)
Q Consensus       367 ---~~~~~-------~~~~~~la~~~~~~----g~----~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-------~g~  421 (765)
                         ..|..       ...|..........    ++    ...++..|++++..+|.++++|+.++..+..       .|+
T Consensus       215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~  294 (530)
T 2ooe_A          215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGD  294 (530)
T ss_dssp             SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccc
Confidence               02221       23444433222221    12    2478899999999999999999999999986       799


Q ss_pred             HH-------HHHHhcCCCCC-ccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhh
Q 004249          422 DE-------EAISLLTPPMS-LENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEE  493 (765)
Q Consensus       422 ~~-------~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~  493 (765)
                      ++       +|+.++++++. ..|..            ..++..++.++...|++++|...|.+++.         ..|.
T Consensus       295 ~~~a~~~~~~A~~~~~~Al~~~~p~~------------~~l~~~~~~~~~~~g~~~~A~~~~~~al~---------~~p~  353 (530)
T 2ooe_A          295 MNNAKLFSDEAANIYERAISTLLKKN------------MLLYFAYADYEESRMKYEKVHSIYNRLLA---------IEDI  353 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTTTCSSC------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------SSSS
T ss_pred             hhhhhhhhHHHHHHHHHHHHHhCccc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhC---------cccc
Confidence            87       99999999997 67776            68899999999999999999999999996         5566


Q ss_pred             HH-HHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhH
Q 004249          494 HR-LLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWN  572 (765)
Q Consensus       494 ~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  572 (765)
                      ++ .++..++.++.+.|++++|+.+|+++++..    |.........+...+...|++++|...|+++++.+|+++.+|.
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~----~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~  429 (530)
T 2ooe_A          354 DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA----RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL  429 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT----TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc----CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHH
Confidence            54 589999999999999999999999999876    3333333343442344689999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCC----chhhhhhhhhhhhhHHHHHHHHHHHHhhCCCC
Q 004249          573 RYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVP----PIIISGHQFTMISHHQDAAREYLEAYKLLPEN  636 (765)
Q Consensus       573 ~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~  636 (765)
                      .++.+....|+. +.+...+.+.+...|.++.    ++...+......|+.+.+...+.++++..|++
T Consensus       430 ~~~~~~~~~g~~-~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~  496 (530)
T 2ooe_A          430 AYIDYLSHLNED-NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  496 (530)
T ss_dssp             HHHHHHTTTTCH-HHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHhCCCH-hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence            999998877765 6888999999988776554    34445666667899999999999999999953

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.95  E-value=9.2e-28  Score=249.52  Aligned_cols=266  Identities=14%  Similarity=0.076  Sum_probs=157.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 004249          127 SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL  206 (765)
Q Consensus       127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  206 (765)
                      .++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...
T Consensus        67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  146 (365)
T 4eqf_A           67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT  146 (365)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence            35555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHH----------HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q 004249          207 GNFQRAADVYRQMVQLCPENIEALKM----------GAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM  276 (765)
Q Consensus       207 g~~~~A~~~~~~al~~~p~~~~~~~~----------la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~  276 (765)
                      |++++|+..|+++++..|++..++..          +|.++...|++++|+..+++++...|......++..+|.++...
T Consensus       147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~  226 (365)
T 4eqf_A          147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS  226 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence            55555555555555555544333332          25566666666666666666666666533333555666666666


Q ss_pred             ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHH
Q 004249          277 NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTAL  356 (765)
Q Consensus       277 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  356 (765)
                      |++++|+..|++++..    .|....++..+|.++...|++++|+..|++++... |.++.++..+|.++...|++++|+
T Consensus       227 g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~  301 (365)
T 4eqf_A          227 GEFNRAIDAFNAALTV----RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV  301 (365)
T ss_dssp             TCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             CCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence            6666666666666665    44555566666666666666666666666665554 555666666777777777777777


Q ss_pred             HHHHHHHhccCCCC------------CHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004249          357 KYYHMLEANAGVHN------------DGCLHLKIAECSLALKEREKSIIYFYKAL  399 (765)
Q Consensus       357 ~~~~~~~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al  399 (765)
                      .+|++++.+  .|+            +..+|..++.++..+|+.+.+.....+.+
T Consensus       302 ~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l  354 (365)
T 4eqf_A          302 SNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL  354 (365)
T ss_dssp             HHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred             HHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence            777766665  333            35677888888888888887777665543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.95  E-value=5.3e-26  Score=232.26  Aligned_cols=284  Identities=14%  Similarity=0.037  Sum_probs=202.6

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE  205 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  205 (765)
                      ..++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  101 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN  101 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHH-HH-HHHHhccHHHHH
Q 004249          206 LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLL-AS-MLVQMNAYDRVL  283 (765)
Q Consensus       206 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l-~~-~~~~~~~~~~A~  283 (765)
                      .|++++|+..+++++...|.+...+..+...                    .|....   ...+ +. ++...|++++|+
T Consensus       102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~---~~~~~~~~~~~~~~~~~~A~  158 (327)
T 3cv0_A          102 EHNANAALASLRAWLLSQPQYEQLGSVNLQA--------------------DVDIDD---LNVQSEDFFFAAPNEYRECR  158 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTTTC-------------------------------------------CCTTSHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCccHHHHHHHhHH--------------------HHHHHH---HHHHHHhHHHHHcccHHHHH
Confidence            5555555555555555555444333222100                    000000   1122 44 577888999999


Q ss_pred             HHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 004249          284 KHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLE  363 (765)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  363 (765)
                      ..+++++..    .+....++..+|.++...|++++|+..+++++... |.++.++..+|.++...|++++|+..|++++
T Consensus       159 ~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  233 (327)
T 3cv0_A          159 TLLHAALEM----NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL  233 (327)
T ss_dssp             HHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhh----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999888    66678888889999999999999999999988776 7788999999999999999999999999999


Q ss_pred             hccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC------------CHHHHHHHHHHHHHcCCHHHHHHhcCC
Q 004249          364 ANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED------------NIDARLTLASLLLEDAKDEEAISLLTP  431 (765)
Q Consensus       364 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~  431 (765)
                      ..  .|.++.++..+|.++...|++++|+..|++++...|.            +..++..++.++...|++++|..++++
T Consensus       234 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  311 (327)
T 3cv0_A          234 DI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ  311 (327)
T ss_dssp             HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             Hc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            99  8999999999999999999999999999999999999            789999999999999999999999999


Q ss_pred             CCCccccc
Q 004249          432 PMSLENKY  439 (765)
Q Consensus       432 ~~~~~~~~  439 (765)
                      +++..+..
T Consensus       312 ~l~~~~~~  319 (327)
T 3cv0_A          312 NVEPFAKE  319 (327)
T ss_dssp             CSHHHHHH
T ss_pred             HHHhcchh
Confidence            98865543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.95  E-value=2.1e-26  Score=236.14  Aligned_cols=259  Identities=11%  Similarity=0.092  Sum_probs=203.4

Q ss_pred             HHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHH
Q 004249          117 VIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGD-TTWAMSCLSEAVKADPNDFKL  195 (765)
Q Consensus       117 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~  195 (765)
                      ++..+|++..++..+|.++...|++++|+..|++++.++|++..+|..+|.++..+|+ +++|+.+|++++.++|++..+
T Consensus        89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a  168 (382)
T 2h6f_A           89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV  168 (382)
T ss_dssp             EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence            5566777888888888888888899999999999998889888888889988888886 889999999988888888888


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 004249          196 KFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQ  275 (765)
Q Consensus       196 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~  275 (765)
                      |..+|.++...|++++|+..|+++++++|++..+|..+|.++...|++++|+..|+++++.+|.+..  +|+.+|.++..
T Consensus       169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~--a~~~lg~~l~~  246 (382)
T 2h6f_A          169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS--VWNQRYFVISN  246 (382)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHH
Confidence            8888988888888888888888888888888888888888888888888888888888888888766  77888888888


Q ss_pred             -hccHHHH-----HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHcc
Q 004249          276 -MNAYDRV-----LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNR  349 (765)
Q Consensus       276 -~~~~~~A-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~  349 (765)
                       .|.+++|     +..|++++.+                                      . |.+..+|..++.++...
T Consensus       247 l~~~~~eA~~~~el~~~~~Al~l--------------------------------------~-P~~~~a~~~l~~ll~~~  287 (382)
T 2h6f_A          247 TTGYNDRAVLEREVQYTLEMIKL--------------------------------------V-PHNESAWNYLKGILQDR  287 (382)
T ss_dssp             TTCSCSHHHHHHHHHHHHHHHHH--------------------------------------S-TTCHHHHHHHHHHHTTT
T ss_pred             hcCcchHHHHHHHHHHHHHHHHH--------------------------------------C-CCCHHHHHHHHHHHHcc
Confidence             4444666     3555555555                                      3 55556666666666655


Q ss_pred             c--cHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhc--------c-HHHHHHHHHHH-HHHcCCCHHHHHHHHHHHH
Q 004249          350 E--LYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALK--------E-REKSIIYFYKA-LQILEDNIDARLTLASLLL  417 (765)
Q Consensus       350 g--~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~  417 (765)
                      |  ++++|+..+.++ ..  .|+++.++..+|.+|..+|        + +++|+.+|+++ ++++|.....|..++..+.
T Consensus       288 g~~~~~~a~~~~~~~-~~--~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          288 GLSKYPNLLNQLLDL-QP--SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             CGGGCHHHHHHHHHH-TT--TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHh-cc--CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            5  566777777666 44  6777777777777777764        2 47777777777 7777777777777777665


Q ss_pred             Hc
Q 004249          418 ED  419 (765)
Q Consensus       418 ~~  419 (765)
                      ..
T Consensus       365 ~~  366 (382)
T 2h6f_A          365 SK  366 (382)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.95  E-value=1e-26  Score=238.51  Aligned_cols=223  Identities=11%  Similarity=0.052  Sum_probs=196.5

Q ss_pred             CCCcHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHhccCCCCHHHH
Q 004249           85 KKVCPE-IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGN-TAKAMGCYWLAACYKQKDSSLW  162 (765)
Q Consensus        85 ~~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~p~~~~~~  162 (765)
                      ...+|+ ...+...|.++...|++++|+..|++++..+|++..+|+.+|.++..+|+ +++|+.+|++++.++|++..+|
T Consensus        90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~  169 (382)
T 2h6f_A           90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  169 (382)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            344454 44566788999999999999999999999999999999999999999997 9999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC
Q 004249          163 KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK-SG  241 (765)
Q Consensus       163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g  241 (765)
                      ..+|.++..+|++++|+.+|++++.++|++..+|..+|.++...|++++|+.+|+++++++|.+..+|..+|.++.. .|
T Consensus       170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~  249 (382)
T 2h6f_A          170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  249 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 56


Q ss_pred             CHHHH-----HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc
Q 004249          242 QIESS-----VDILEDYLKGHPTEADFGVIDLLASMLVQMN--AYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQL  314 (765)
Q Consensus       242 ~~~~A-----~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  314 (765)
                      .+++|     +.+|++++.++|++..  +|+.++.++...|  ++++|+..+.++ ..    .+....++..+|.++...
T Consensus       250 ~~~eA~~~~el~~~~~Al~l~P~~~~--a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~----~p~~~~al~~La~~~~~~  322 (382)
T 2h6f_A          250 YNDRAVLEREVQYTLEMIKLVPHNES--AWNYLKGILQDRGLSKYPNLLNQLLDL-QP----SHSSPYLIAFLVDIYEDM  322 (382)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHTTTCGGGCHHHHHHHHHH-TT----TCCCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHccCccchHHHHHHHHHh-cc----CCCCHHHHHHHHHHHHHH
Confidence            65888     5999999999999877  8889999998877  577777777665 33    444445555555555444

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.95  E-value=2.4e-26  Score=234.84  Aligned_cols=234  Identities=13%  Similarity=0.126  Sum_probs=189.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL  169 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  169 (765)
                      ....++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   99 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   99 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence            44567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHH--------------HH-HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004249          170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHL--------------AS-LYVELGNFQRAADVYRQMVQLCPENIEALKMGA  234 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  234 (765)
                      ...|++++|+..+++++...|.+...+..+              +. ++...|++++|+..++++++..|.++.++..+|
T Consensus       100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  179 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG  179 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            999999999999999999999988777776              55 577778888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc
Q 004249          235 KLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQL  314 (765)
Q Consensus       235 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  314 (765)
                      .++...|++++|+..+++++...|++..  ++..+|.++...|++++|+..+++++..    .|....++..+|.++...
T Consensus       180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~  253 (327)
T 3cv0_A          180 VLYNLSNNYDSAAANLRRAVELRPDDAQ--LWNKLGATLANGNRPQEALDAYNRALDI----NPGYVRVMYNMAVSYSNM  253 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHh
Confidence            8888888888888888888888777654  6677888888888888888888777776    444444444455555455


Q ss_pred             CChhHHHHHHHhhcc
Q 004249          315 GNTDKAEILLTAIHW  329 (765)
Q Consensus       315 ~~~~~A~~~~~~~~~  329 (765)
                      |++++|+..+++++.
T Consensus       254 g~~~~A~~~~~~a~~  268 (327)
T 3cv0_A          254 SQYDLAAKQLVRAIY  268 (327)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHH
Confidence            544444444444443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.93  E-value=2.9e-25  Score=210.89  Aligned_cols=194  Identities=20%  Similarity=0.234  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 004249           93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQ  172 (765)
Q Consensus        93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  172 (765)
                      .++..|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus         7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~   86 (217)
T 2pl2_A            7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVAL   86 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            33444555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             -----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 004249          173 -----------GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSG  241 (765)
Q Consensus       173 -----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  241 (765)
                                 |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.++...|
T Consensus        87 ~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g  165 (217)
T 2pl2_A           87 YRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMG  165 (217)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHT
T ss_pred             hhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcC
Confidence                       555555555555555555555555555555555555555555555555555 55555555555555555


Q ss_pred             CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249          242 QIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELV  289 (765)
Q Consensus       242 ~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  289 (765)
                      ++++|+..|+++++.+|+++.  ++..+|.++...|++++|+..++++
T Consensus       166 ~~~~A~~~~~~al~~~P~~~~--~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          166 RLDEALAQYAKALEQAPKDLD--LRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHTC--------------
T ss_pred             CHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHccCHHHHHHHHHHH
Confidence            555555555555555555443  4445555555555555555555443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.93  E-value=1.5e-24  Score=205.90  Aligned_cols=199  Identities=17%  Similarity=0.137  Sum_probs=171.5

Q ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004249          122 EELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLAS  201 (765)
Q Consensus       122 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  201 (765)
                      |.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            78889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHh-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 004249          202 LYVEL-----------GNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLA  270 (765)
Q Consensus       202 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~  270 (765)
                      ++...           |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+ +++.  ++..+|
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~--~~~~la  158 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPE--IRSALA  158 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHH--HHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchH--HHHHHH
Confidence            99999           999999999999999999999999999999999999999999999999998 5544  788999


Q ss_pred             HHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhh
Q 004249          271 SMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAI  327 (765)
Q Consensus       271 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  327 (765)
                      .++...|++++|+..|++++..    .|....++..+|.++...|++++|+..++++
T Consensus       159 ~~~~~~g~~~~A~~~~~~al~~----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          159 ELYLSMGRLDEALAQYAKALEQ----APKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            9999999999999999999998    7777888888888888888888888888776

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.93  E-value=5.1e-24  Score=211.61  Aligned_cols=279  Identities=10%  Similarity=0.022  Sum_probs=183.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 004249           98 ASLHYALGRYEEAISVLHEVIRLEEEL-PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTT  176 (765)
Q Consensus        98 a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~  176 (765)
                      ....+..|+|..|+..++++...+|.+ .++...++.+|..+|+++.|+..++.   .+|....++..++..+...|+.+
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence            455677888888888887766666655 35667778888888888888876654   24445566777777888888888


Q ss_pred             HHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004249          177 WAMSCLSEAVKA--DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYL  254 (765)
Q Consensus       177 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  254 (765)
                      +|+..+++++..  +|+++.+++.+|.++...|++++|+..+++     |.++.++..+|.++..+|++++|+..+++++
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~  157 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ  157 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            888888887765  578888888888888888888888888777     7777788888888888888888888888888


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCC
Q 004249          255 KGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSD  334 (765)
Q Consensus       255 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  334 (765)
                      +.+|++........+..++...|++++|+..|++++..                                      . |.
T Consensus       158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------------------------------------~-p~  198 (291)
T 3mkr_A          158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------------------------------------C-SP  198 (291)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------------------------------------S-CC
T ss_pred             hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--------------------------------------C-CC
Confidence            87776532111011112222335666666666666555                                      3 44


Q ss_pred             hHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHcCCCHHHHHHHH
Q 004249          335 HAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREK-SIIYFYKALQILEDNIDARLTLA  413 (765)
Q Consensus       335 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~l~  413 (765)
                      ++.++..+|.++...|++++|+..|++++..  +|+++.++.++|.++...|+..+ +..+++++++.+|+++.+.    
T Consensus       199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----  272 (291)
T 3mkr_A          199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----  272 (291)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----
Confidence            5555666666666666666666666666666  56666666666666666666544 3455566666666665433    


Q ss_pred             HHHHHcCCHHHHHHhc
Q 004249          414 SLLLEDAKDEEAISLL  429 (765)
Q Consensus       414 ~~~~~~g~~~~A~~~~  429 (765)
                      .+..+.+.|+++..-|
T Consensus       273 d~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          273 EYRAKENDFDRLVLQY  288 (291)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            2344455555555444

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.93  E-value=2.9e-24  Score=227.94  Aligned_cols=342  Identities=15%  Similarity=0.048  Sum_probs=247.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCH---HHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 004249           95 LGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNT---AKAMGCYWLAACYKQKDSSLWKLIFPWLIE  171 (765)
Q Consensus        95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  171 (765)
                      ...|..+++.|++++|+..|+++.+.  .++.+++.+|.+|...|++   ++|+.+|+++++.   ++.+++.+|.++..
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~   81 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA   81 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence            34678899999999999999999765  6788999999999999999   9999999999965   77889999997777


Q ss_pred             cC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 004249          172 QG-----DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRA---ADVYRQMVQLCPENIEALKMGAKLYQKSGQI  243 (765)
Q Consensus       172 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  243 (765)
                      .+     ++++|+.+|++++..  .++.+++.+|.+|...+...++   ...+.++..  +.++.+++.+|.+|...+.+
T Consensus        82 ~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~  157 (452)
T 3e4b_A           82 KPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTY  157 (452)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCG
T ss_pred             CCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCc
Confidence            66     788999999999984  4556899999999987765444   444444443  34577899999999999966


Q ss_pred             HHHHHH----HHHHHhcCCCCCCHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc--
Q 004249          244 ESSVDI----LEDYLKGHPTEADFGVIDLLASMLVQMN---AYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQL--  314 (765)
Q Consensus       244 ~~A~~~----~~~~~~~~p~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  314 (765)
                      +++...    ++.+...+|   .  +++.+|.+|...|   ++++|+.+|+++...    .+.....++.+|.+|...  
T Consensus       158 ~~~~~~a~~~~~~a~~~~~---~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----g~~~a~~~~~Lg~~y~~g~~  228 (452)
T 3e4b_A          158 DQHLDDVERICKAALNTTD---I--CYVELATVYQKKQQPEQQAELLKQMEAGVSR----GTVTAQRVDSVARVLGDATL  228 (452)
T ss_dssp             GGGHHHHHHHHHHHTTTCT---T--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----TCSCHHHHHHHHHHHTCGGG
T ss_pred             ccCHHHHHHHHHHHHcCCH---H--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCCCC
Confidence            655555    444433333   3  6889999999999   999999999999988    666777778899988665  


Q ss_pred             --CChhHHHHHHHhhcccCCCChHHHHHHHHHH-H--HccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhc---
Q 004249          315 --GNTDKAEILLTAIHWENVSDHAESINEIADL-F--KNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALK---  386 (765)
Q Consensus       315 --~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---  386 (765)
                        +++++|+.+|+++.    +.++.+++.+|.+ +  ...+++++|+.+|+++...    .++.+++.+|.+|. .|   
T Consensus       229 ~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----g~~~A~~~Lg~~y~-~G~g~  299 (452)
T 3e4b_A          229 GTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----DQPRAELLLGKLYY-EGKWV  299 (452)
T ss_dssp             SSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHH-HCSSS
T ss_pred             CCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHH-cCCCC
Confidence              78999999999986    5678889999988 5  5788999999999998854    47889999999988 56   


Q ss_pred             --cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHH
Q 004249          387 --EREKSIIYFYKALQILEDNIDARLTLASLLLE----DAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCR  460 (765)
Q Consensus       387 --~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  460 (765)
                        ++++|+.+|+++.   |.++.+.+.+|.+|..    ..++++|+.+|+++.+...              +.+.+.+|.
T Consensus       300 ~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--------------~~A~~~Lg~  362 (452)
T 3e4b_A          300 PADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ--------------NSADFAIAQ  362 (452)
T ss_dssp             CCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC--------------TTHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh--------------HHHHHHHHH
Confidence              8999999999988   8889999999988876    3377888888777665322              245666777


Q ss_pred             HHHh----cchhHHHHHhhHHHHh
Q 004249          461 IYKA----KGMIEGFVDMLLPLVC  480 (765)
Q Consensus       461 ~~~~----~~~~~~A~~~~~~~~~  480 (765)
                      +|..    ..++.+|...|..+..
T Consensus       363 ~y~~G~g~~~d~~~A~~~~~~A~~  386 (452)
T 3e4b_A          363 LFSQGKGTKPDPLNAYVFSQLAKA  386 (452)
T ss_dssp             HHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred             HHHhCCCCCCCHHHHHHHHHHHHH
Confidence            6664    3466667766666653

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.93  E-value=2.2e-24  Score=213.82  Aligned_cols=256  Identities=14%  Similarity=0.026  Sum_probs=197.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC----HHHHHHHHHH
Q 004249           93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD----SSLWKLIFPW  168 (765)
Q Consensus        93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~la~~  168 (765)
                      .++..|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++. .|.+    ..++..+|.+
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHH
Confidence            4567788889999999999999999999999888999999999999999999999999988 3333    3458888999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004249          169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVD  248 (765)
Q Consensus       169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  248 (765)
                      +...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..|+++++..|.++.++..+|...+..+++++|+.
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~  163 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS  163 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998888888899999999999999999999999988888888888888845555568899999


Q ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHH
Q 004249          249 ILEDYLKGHPTEADFGVIDLLASMLVQMNA---YDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLT  325 (765)
Q Consensus       249 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  325 (765)
                      .|+++++.+|++..  ++..+|.++...|+   +++|+..++++++..... +...                        
T Consensus       164 ~~~~a~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~------------------------  216 (272)
T 3u4t_A          164 SFVKVLELKPNIYI--GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG-GAKY------------------------  216 (272)
T ss_dssp             HHHHHHHHSTTCHH--HHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG-GGGG------------------------
T ss_pred             HHHHHHHhCccchH--HHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc-cccc------------------------
Confidence            99999888888754  67788888888888   788888888888773211 1100                        


Q ss_pred             hhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Q 004249          326 AIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLA  384 (765)
Q Consensus       326 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~  384 (765)
                            ......++..+|.++...|++++|+.+|++++.+  +|+++.++-.++.+...
T Consensus       217 ------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~  267 (272)
T 3u4t_A          217 ------KDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKKAIDGLKMKLEH  267 (272)
T ss_dssp             ------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHC-----
T ss_pred             ------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHHHHHHhhhhhcc
Confidence                  0112345666666666667777777777777766  67676666666555443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.93  E-value=2.1e-21  Score=216.79  Aligned_cols=381  Identities=11%  Similarity=0.064  Sum_probs=288.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhCC----CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 004249           98 ASLHYALGRYEEAISVLHEVIRLEEE----LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG  173 (765)
Q Consensus        98 a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  173 (765)
                      +..++..|.+.+|+++|++++ ..|+    +......++.+..+. +..+...+..+.-..+      ...+|.++...|
T Consensus       992 vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eIA~Iai~lg 1063 (1630)
T 1xi4_A          992 VKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDIANIAISNE 1063 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHHHHHHHhCC
Confidence            355779999999999999998 4444    334444455544444 4444444444432211      233899999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249          174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDY  253 (765)
Q Consensus       174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  253 (765)
                      .+++|..+|+++-    ....+   +...+...|++++|.++++++     +.+.+|+.+|.++...|++++|+..|.++
T Consensus      1064 lyEEAf~IYkKa~----~~~~A---~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A         1064 LFEEAFAIFRKFD----VNTSA---VQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred             CHHHHHHHHHHcC----CHHHH---HHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence            9999999999973    11221   233344889999999999876     66899999999999999999999999886


Q ss_pred             HhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCC
Q 004249          254 LKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVS  333 (765)
Q Consensus       254 ~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  333 (765)
                           +++.  .+..++.++.+.|++++|+++|..+.+..+     ...+...+|.+|.+++++++ ++.|..     .+
T Consensus      1132 -----dD~s--ay~eVa~~~~~lGkyEEAIeyL~mArk~~~-----e~~Idt~LafaYAKl~rlee-le~fI~-----~~ 1193 (1630)
T 1xi4_A         1132 -----DDPS--SYMEVVQAANTSGNWEELVKYLQMARKKAR-----ESYVETELIFALAKTNRLAE-LEEFIN-----GP 1193 (1630)
T ss_pred             -----CChH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-----cccccHHHHHHHHhhcCHHH-HHHHHh-----CC
Confidence                 4443  688999999999999999999999988721     11222358999999999885 444422     13


Q ss_pred             ChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 004249          334 DHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLA  413 (765)
Q Consensus       334 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  413 (765)
                      . ...+..+|..+...|++++|..+|.++          ..|..+|.++.++|++++|++.++++     .+..+|...+
T Consensus      1194 n-~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~ 1257 (1630)
T 1xi4_A         1194 N-NAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVC 1257 (1630)
T ss_pred             C-HHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHH
Confidence            3 456668999999999999999999874          46889999999999999999999998     5678999999


Q ss_pred             HHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhh
Q 004249          414 SLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEE  493 (765)
Q Consensus       414 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~  493 (765)
                      .++...|++..|..+... +..+|+               .+..++..|...|.+++|+..+...+.         .++.
T Consensus      1258 ~acve~~Ef~LA~~cgl~-Iiv~~d---------------eLeeli~yYe~~G~feEAI~LlE~aL~---------Lera 1312 (1630)
T 1xi4_A         1258 FACVDGKEFRLAQMCGLH-IVVHAD---------------ELEELINYYQDRGYFEELITMLEAALG---------LERA 1312 (1630)
T ss_pred             HHHhhhhHHHHHHHHHHh-hhcCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHhc---------cChh
Confidence            999999999999998764 433333               355888999999999999999988886         6788


Q ss_pred             HHHHHHHHHHHHHh--hhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHH
Q 004249          494 HRLLIIDLCKTLAS--LHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGV  557 (765)
Q Consensus       494 ~~~~~~~l~~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  557 (765)
                      +...+..+|.++.+  .++..+++++|...+.+.+.-..-+...++.-+..+|.+-|+++.|+...
T Consensus      1313 H~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A         1313 HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred             HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            99999888888865  67888999999877765411000123344445555888999999998544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.93  E-value=3e-24  Score=212.79  Aligned_cols=254  Identities=11%  Similarity=-0.024  Sum_probs=196.5

Q ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHH
Q 004249          125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND----FKLKFHLA  200 (765)
Q Consensus       125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la  200 (765)
                      ++.++..|.+++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++. .|.+    ..++..+|
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence            456788899999999999999999999999998888899999999999999999999999988 4433    34588899


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHH
Q 004249          201 SLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYD  280 (765)
Q Consensus       201 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~  280 (765)
                      .++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.+..  ++..+|...+..++++
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~l~~~~~~~~~~~  159 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK--VFYELGQAYYYNKEYV  159 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHH--HHHHHHHHHHHTTCHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHH--HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988888999999999999999999999999888887765  6778884444455888


Q ss_pred             HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC---hhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHH
Q 004249          281 RVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGN---TDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALK  357 (765)
Q Consensus       281 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  357 (765)
                      +|+..|+++++.    .|....++..+|.++...|+   +++|+..++                                
T Consensus       160 ~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--------------------------------  203 (272)
T 3u4t_A          160 KADSSFVKVLEL----KPNIYIGYLWRARANAAQDPDTKQGLAKPYYE--------------------------------  203 (272)
T ss_dssp             HHHHHHHHHHHH----STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHH--------------------------------
T ss_pred             HHHHHHHHHHHh----CccchHHHHHHHHHHHHcCcchhhHHHHHHHH--------------------------------
Confidence            888888888877    44555555555655555555   444444444                                


Q ss_pred             HHHHHHhccC-CCC-----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 004249          358 YYHMLEANAG-VHN-----DGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDA  420 (765)
Q Consensus       358 ~~~~~~~~~~-~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  420 (765)
                         +++.... .|+     ...++..+|.++...|++++|+.+|+++++++|+++.++..++.+....+
T Consensus       204 ---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          204 ---KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             ---HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred             ---HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence               4443310 122     23678899999999999999999999999999999999999888776544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.93  E-value=9.9e-24  Score=209.51  Aligned_cols=256  Identities=11%  Similarity=0.047  Sum_probs=206.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHH
Q 004249          133 LVHDALGNTAKAMGCYWLAACYKQKDS-SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQR  211 (765)
Q Consensus       133 ~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  211 (765)
                      ...+..|+|.+|+..++++...+|++. ++...++++|...|++++|+..++.   .+|....++..++..+...|++++
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~   83 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA   83 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence            455667888888888888777777663 5667788888888888888877755   245566777788888888888888


Q ss_pred             HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249          212 AADVYRQMVQL--CPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELV  289 (765)
Q Consensus       212 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  289 (765)
                      |+..+++++..  +|+++.+++.+|.++...|++++|+..+++     |.+..  ++..+|.++..+|++++|+..++++
T Consensus        84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~--~~~~l~~~~~~~g~~~~A~~~l~~~  156 (291)
T 3mkr_A           84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLE--CMAMTVQILLKLDRLDLARKELKKM  156 (291)
T ss_dssp             HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHH--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHH--HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            88888888765  588888888888888888888888888876     54444  6677888888888888888888888


Q ss_pred             HHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHH--HHHHHHccccHHHHHHHHHHHHhccC
Q 004249          290 DLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINE--IADLFKNRELYSTALKYYHMLEANAG  367 (765)
Q Consensus       290 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~~~~~~~  367 (765)
                      +..    .|..                                   ......  ...++...|++++|+.+|++++..  
T Consensus       157 ~~~----~p~~-----------------------------------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--  195 (291)
T 3mkr_A          157 QDQ----DEDA-----------------------------------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--  195 (291)
T ss_dssp             HHH----CTTC-----------------------------------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--
T ss_pred             Hhh----CcCc-----------------------------------HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--
Confidence            776    2222                                   111111  123334669999999999999999  


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHH-HHHhcCCCCCccccc
Q 004249          368 VHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEE-AISLLTPPMSLENKY  439 (765)
Q Consensus       368 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~  439 (765)
                      .|+++.++..+|.++...|++++|+..|+++++.+|++++++..+|.++...|+.++ +..+++++++.+|+.
T Consensus       196 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~  268 (291)
T 3mkr_A          196 CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH  268 (291)
T ss_dssp             SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence            899999999999999999999999999999999999999999999999999999976 578999999988876

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1e-23  Score=207.13  Aligned_cols=239  Identities=14%  Similarity=0.064  Sum_probs=176.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 004249          159 SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN-------IEALK  231 (765)
Q Consensus       159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~  231 (765)
                      ...+..+|.++...|++++|+.+|++++..+ .++.++..+|.++...|++++|+..++++++..|.+       +.++.
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            3455556666666666666666666666665 556666666666666666666666666666655544       45666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004249          232 MGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICH  311 (765)
Q Consensus       232 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  311 (765)
                      .+|.++...|++++|+..+++++...|.          +.++...|++++|+..+++++..    .+....++..+|.++
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~  149 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT----------ADILTKLRNAEKELKKAEAEAYV----NPEKAEEARLEGKEY  149 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCch----------hHHHHHHhHHHHHHHHHHHHHHc----CcchHHHHHHHHHHH
Confidence            6666666666666666666666666554          24566667777777777777776    566667777777777


Q ss_pred             HhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHH
Q 004249          312 IQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKS  391 (765)
Q Consensus       312 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  391 (765)
                      ...|++++|+..+++++... |.++.++..+|.++...|++++|+.+|++++..  .|+++.++..+|.++...|++++|
T Consensus       150 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A  226 (258)
T 3uq3_A          150 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYASA  226 (258)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhHHHH
Confidence            77788888888777777666 667888899999999999999999999999988  898999999999999999999999


Q ss_pred             HHHHHHHHHHc------CCCHHHHHHHHHH
Q 004249          392 IIYFYKALQIL------EDNIDARLTLASL  415 (765)
Q Consensus       392 ~~~~~~al~~~------p~~~~~~~~l~~~  415 (765)
                      +..|+++++.+      |.+..++..++.+
T Consensus       227 ~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          227 LETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            99999999998      8888777776654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2e-23  Score=204.97  Aligned_cols=226  Identities=14%  Similarity=0.117  Sum_probs=181.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------HHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD-------SSLW  162 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~  162 (765)
                      .+..+...|..++..|++++|+..|++++..+ .++.++..+|.++...|++++|+..+.+++...|.+       +.++
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            45667778888888899999999999888888 888888888988888899999999998888887766       6788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004249          163 KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ  242 (765)
Q Consensus       163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  242 (765)
                      ..+|.++...|++++|+..|++++...|.        +.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence            88888888888888888888888888776        4567777788888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHH
Q 004249          243 IESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEI  322 (765)
Q Consensus       243 ~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  322 (765)
                      +++|+..+++++...|.+..  ++..+|.++...|++++|+..+++++..    .|....++..+|.++...|++++|+.
T Consensus       155 ~~~A~~~~~~a~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~~  228 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPEDAR--GYSNRAAALAKLMSFPEAIADCNKAIEK----DPNFVRAYIRKATAQIAVKEYASALE  228 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            88888888888888887654  6778888888888888888888888777    45555666666666666666666666


Q ss_pred             HHHhhccc
Q 004249          323 LLTAIHWE  330 (765)
Q Consensus       323 ~~~~~~~~  330 (765)
                      .+++++..
T Consensus       229 ~~~~a~~~  236 (258)
T 3uq3_A          229 TLDAARTK  236 (258)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66665543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.92  E-value=7.7e-24  Score=224.72  Aligned_cols=381  Identities=13%  Similarity=0.042  Sum_probs=261.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249          129 HILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDT---TWAMSCLSEAVKADPNDFKLKFHLASLYVE  205 (765)
Q Consensus       129 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~  205 (765)
                      ..+|..+...|++++|+..|+++.+.  .++.+++.+|.+|...|++   ++|+.+|+++++.   ++.+++.+|.++..
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~   81 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA   81 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence            45788899999999999999998765  5677888899999988888   8999999999865   77889999997766


Q ss_pred             hC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH---HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc
Q 004249          206 LG-----NFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESS---VDILEDYLKGHPTEADFGVIDLLASMLVQMN  277 (765)
Q Consensus       206 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~  277 (765)
                      .+     ++++|+.+|+++++.  .++.+++.+|.+|...+...++   ...+.++...  .++.  +++.+|.+|...+
T Consensus        82 ~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~--a~~~Lg~~y~~~~  155 (452)
T 3e4b_A           82 KPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPE--AGLAQVLLYRTQG  155 (452)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTT--HHHHHHHHHHHHT
T ss_pred             CCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHH--HHHHHHHHHHcCC
Confidence            65     788999999999884  4455888999999887765544   4444444432  2344  6779999999998


Q ss_pred             cHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC---ChhHHHHHHHhhcccCCCChHHHHHHHHHHHHcc----c
Q 004249          278 AYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLG---NTDKAEILLTAIHWENVSDHAESINEIADLFKNR----E  350 (765)
Q Consensus       278 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g  350 (765)
                      .++++........+.....+   ..+++.+|.++...|   ++++|+..|+++.... +.....++.+|.+|...    +
T Consensus       156 ~~~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~  231 (452)
T 3e4b_A          156 TYDQHLDDVERICKAALNTT---DICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP  231 (452)
T ss_dssp             CGGGGHHHHHHHHHHHTTTC---TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred             CcccCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence            66666665444444322222   338889999999999   8999999999987766 66677778899988665    7


Q ss_pred             cHHHHHHHHHHHHhccCCCCCHHHHHHHHHH-H--HHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC-----CH
Q 004249          351 LYSTALKYYHMLEANAGVHNDGCLHLKIAEC-S--LALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDA-----KD  422 (765)
Q Consensus       351 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-----~~  422 (765)
                      ++++|+.+|+++.     |+++.+++.+|.+ +  ...+++++|+.+|+++.+  +.++.+++.+|.+|. .|     ++
T Consensus       232 d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~-~G~g~~~d~  303 (452)
T 3e4b_A          232 DEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--ADQPRAELLLGKLYY-EGKWVPADA  303 (452)
T ss_dssp             CHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HCSSSCCCH
T ss_pred             CHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCCCCCH
Confidence            8999999999876     5677889999998 4  467889999999999885  458889999999987 55     89


Q ss_pred             HHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHh----cchhHHHHHhhHHHHhhhcccccccChhhHHHHH
Q 004249          423 EEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKA----KGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLI  498 (765)
Q Consensus       423 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~  498 (765)
                      ++|+.+|+++.   +..            +.+.+.+|.+|..    ..++++|+..|.++..           +.++.+.
T Consensus       304 ~~A~~~~~~Aa---~g~------------~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-----------~g~~~A~  357 (452)
T 3e4b_A          304 KAAEAHFEKAV---GRE------------VAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-----------NGQNSAD  357 (452)
T ss_dssp             HHHHHHHHTTT---TTC------------HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-----------TTCTTHH
T ss_pred             HHHHHHHHHHh---CCC------------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-----------hChHHHH
Confidence            99999999888   333            4678888888876    3478888888888764           2456677


Q ss_pred             HHHHHHHHh----hhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHh
Q 004249          499 IDLCKTLAS----LHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKL  563 (765)
Q Consensus       499 ~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~  563 (765)
                      +.+|.+|..    .+++.+|..+|+++....    +.........+. .....++..+|....++....
T Consensus       358 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g----~~~a~~~l~~l~-~~~~~~~~~~a~~~~~~~~~~  421 (452)
T 3e4b_A          358 FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD----TPEANDLATQLE-APLTPAQRAEGQRLVQQELAA  421 (452)
T ss_dssp             HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC----CHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHh
Confidence            888888875    457888888888888765    222222222222 233344555555555555443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.92  E-value=8.4e-24  Score=223.17  Aligned_cols=301  Identities=17%  Similarity=0.126  Sum_probs=188.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCCH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELP----NSYHILGLVHDALGNTAKAMGCYWLAACY------KQKDS  159 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------~p~~~  159 (765)
                      ....++..|..++..|++++|+..|++++...|.++    .++..+|.++...|++++|+.++++++..      .|...
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence            344556666677777777777777777777666653    45666666777777777777776666554      12234


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhCC--------------------HHHHH
Q 004249          160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND------FKLKFHLASLYVELGN--------------------FQRAA  213 (765)
Q Consensus       160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~  213 (765)
                      .++..+|.++...|++++|+.++++++...|..      ..++..+|.++...|+                    +++|+
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~  167 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV  167 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence            455566666666666666666666666553321      2345555555555555                    55555


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249          214 DVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRVLKHIELV  289 (765)
Q Consensus       214 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~  289 (765)
                      ..+.+++..                                  .+....    ..++..+|.++...|++++|+..++++
T Consensus       168 ~~~~~al~~----------------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  213 (406)
T 3sf4_A          168 DFYEENLSL----------------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR  213 (406)
T ss_dssp             HHHHHHHHH----------------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred             HHHHHHHHH----------------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            555444433                                  111111    123445566666666666666666665


Q ss_pred             HHHhcCCC--CccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC-----CCChHHHHHHHHHHHHccccHHHHHHHHHHH
Q 004249          290 DLVYYSGK--ELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN-----VSDHAESINEIADLFKNRELYSTALKYYHML  362 (765)
Q Consensus       290 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  362 (765)
                      +...+...  .....++..+|.++...|++++|+..+++++...     .+....++..+|.++...|++++|+.+|+++
T Consensus       214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  293 (406)
T 3sf4_A          214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH  293 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            55533211  1122345566666666666666666666654322     1122567888999999999999999999998


Q ss_pred             HhccCCCC----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHHcCCHHH
Q 004249          363 EANAGVHN----DGCLHLKIAECSLALKEREKSIIYFYKALQILED------NIDARLTLASLLLEDAKDEE  424 (765)
Q Consensus       363 ~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~  424 (765)
                      +.......    ...++..+|.++...|++++|+.+|++++++.+.      ...++..++.++...|+...
T Consensus       294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence            87621111    2668899999999999999999999999988433      35778889999999987754

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.91  E-value=7.4e-24  Score=223.62  Aligned_cols=267  Identities=13%  Similarity=0.046  Sum_probs=194.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRL------EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD------  158 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~------  158 (765)
                      ...+...|.+++..|++++|+..+++++..      .|....++..+|.++...|++++|+.++.+++...|..      
T Consensus        47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  126 (406)
T 3sf4_A           47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE  126 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccch
Confidence            345678899999999999999999999887      34456789999999999999999999999999876542      


Q ss_pred             HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhCCHHHH
Q 004249          159 SSLWKLIFPWLIEQGD--------------------TTWAMSCLSEAVKA------DPNDFKLKFHLASLYVELGNFQRA  212 (765)
Q Consensus       159 ~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A  212 (765)
                      ..++..+|.++...|+                    +++|+..+++++..      .|....++..+|.++...|++++|
T Consensus       127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  206 (406)
T 3sf4_A          127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA  206 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred             HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence            4588899999999999                    99999999998876      223345677788888888888888


Q ss_pred             HHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHH
Q 004249          213 ADVYRQMVQLCPENI------EALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRV  282 (765)
Q Consensus       213 ~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A  282 (765)
                      +..+++++...|...      .++..+|.++...|++++|+..+++++...|....    ..++..+|.++...|++++|
T Consensus       207 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  286 (406)
T 3sf4_A          207 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA  286 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH
Confidence            888888777654432      25666666666666666666666666666665543    22444555555555555555


Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHH
Q 004249          283 LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHML  362 (765)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  362 (765)
                      +..+++++...+..                                 ...+....++..+|.++...|++++|+.+++++
T Consensus       287 ~~~~~~a~~~~~~~---------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  333 (406)
T 3sf4_A          287 IDYHLKHLAIAQEL---------------------------------NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  333 (406)
T ss_dssp             HHHHHHHHHHHHHT---------------------------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc---------------------------------CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            55555555542110                                 011223567788888888889999999999888


Q ss_pred             HhccC----CCCCHHHHHHHHHHHHHhccHHH
Q 004249          363 EANAG----VHNDGCLHLKIAECSLALKEREK  390 (765)
Q Consensus       363 ~~~~~----~~~~~~~~~~la~~~~~~g~~~~  390 (765)
                      +.+..    .+....++..+|.++...|+...
T Consensus       334 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          334 LEISREVGDKSGELTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence            77621    12235678888999988887643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.91  E-value=2.6e-20  Score=208.00  Aligned_cols=433  Identities=11%  Similarity=0.054  Sum_probs=304.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHH
Q 004249          227 IEALKMGAKLYQKSGQIESSVDILEDYLKGHPT----EADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLA  302 (765)
Q Consensus       227 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  302 (765)
                      ++-....+..|...|.+.+|++.+++++ ..|.    +..  .-..++.+..+. +.....++..+.-..    .     
T Consensus       985 PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~--LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d----- 1051 (1630)
T 1xi4_A          985 PEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRN--LQNLLILTAIKA-DRTRVMEYINRLDNY----D----- 1051 (1630)
T ss_pred             HHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHH--HHHHHHHHHHHh-ChhhHHHHHHHhhhc----c-----
Confidence            4445566788889999999999999998 4444    222  222344434333 333333333333211    0     


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Q 004249          303 LKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECS  382 (765)
Q Consensus       303 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~  382 (765)
                       .-.+|.++...|.+++|..+|+++.     ....+   +..++...|++++|+++++++       +.+.+|+.+|.++
T Consensus      1052 -~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A---~~VLie~i~nldrAiE~Aerv-------n~p~vWsqLAKAq 1115 (1630)
T 1xi4_A         1052 -APDIANIAISNELFEEAFAIFRKFD-----VNTSA---VQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQ 1115 (1630)
T ss_pred             -HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHH---HHHHHHHHhhHHHHHHHHHhc-------CCHHHHHHHHHHH
Confidence             2248889999999999999999972     11221   223344788999999998854       4689999999999


Q ss_pred             HHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHH
Q 004249          383 LALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIY  462 (765)
Q Consensus       383 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  462 (765)
                      ...|++++|+..|.++     ++++.+..++.++.+.|++++|+++|..+.+..+.+             .+...+|.+|
T Consensus      1116 l~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-------------~Idt~LafaY 1177 (1630)
T 1xi4_A         1116 LQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-------------YVETELIFAL 1177 (1630)
T ss_pred             HhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-------------cccHHHHHHH
Confidence            9999999999999875     788999999999999999999999999988876554             3344588899


Q ss_pred             HhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhh
Q 004249          463 KAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQ  542 (765)
Q Consensus       463 ~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  542 (765)
                      .+.+++++ ++.|   +          ..++. ..+..+|..+...|++++|..+|.++-             .+..++.
T Consensus      1178 AKl~rlee-le~f---I----------~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA~-------------ny~rLA~ 1229 (1630)
T 1xi4_A         1178 AKTNRLAE-LEEF---I----------NGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVS-------------NFGRLAS 1229 (1630)
T ss_pred             HhhcCHHH-HHHH---H----------hCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhh-------------HHHHHHH
Confidence            99988885 4444   2          22333 456679999999999999999998752             2344445


Q ss_pred             cccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhhHHHH
Q 004249          543 IPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPIIISGHQFTMISHHQDA  622 (765)
Q Consensus       543 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A  622 (765)
                      ++.+.|++++|++.++++     .++.+|..........++. ..|...... +..+   +..+..++..|...|.|++|
T Consensus      1230 tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef-~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEA 1299 (1630)
T 1xi4_A         1230 TLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEF-RLAQMCGLH-IVVH---ADELEELINYYQDRGYFEEL 1299 (1630)
T ss_pred             HHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHH-HHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHH
Confidence            899999999999999998     5668888776666554443 233333322 2222   33345778889999999999


Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccC-----CCchHHHhHHHHHHHhchH
Q 004249          623 AREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAE-----NSQEALYNIARAYHHVGLV  697 (765)
Q Consensus       623 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~lg~~~~~~g~~  697 (765)
                      +..+++++.++|.+......+|+++....        ...+.+.+..+..-..+.+     +....+-.+.-+|++.|.+
T Consensus      1300 I~LlE~aL~LeraH~gmftELaiLyaKy~--------peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~ 1371 (1630)
T 1xi4_A         1300 ITMLEAALGLERAHMGMFTELAILYSKFK--------PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 1371 (1630)
T ss_pred             HHHHHHHhccChhHhHHHHHHHHHHHhCC--------HHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccH
Confidence            99999999999999888888888887543        3345677777776666655     5778899999999999999


Q ss_pred             HHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcC---------------CHHHHHHHHHh
Q 004249          698 SLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSG---------------AVDLARQVLRD  761 (765)
Q Consensus       698 ~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g---------------~~~~A~~~l~k  761 (765)
                      +.|+...-.-....=+.   ..|    .+.  ....-.+|.+|.....|.+.+               +...+..+++|
T Consensus      1372 dnA~~tm~~h~~~a~~~---~~F----k~~--i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~ 1441 (1630)
T 1xi4_A         1372 DNAIITMMNHPTDAWKE---GQF----KDI--ITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK 1441 (1630)
T ss_pred             HHHHHHHHhccHhhhhh---HHH----HHH--hcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHH
Confidence            99995443222110000   000    000  011123678888888887777               77777776664

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.90  E-value=1.7e-22  Score=200.59  Aligned_cols=248  Identities=12%  Similarity=0.030  Sum_probs=165.3

Q ss_pred             cCCHHHHHHHHHHHHHh----hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004249          104 LGRYEEAISVLHEVIRL----EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAM  179 (765)
Q Consensus       104 ~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~  179 (765)
                      .|++++|+..|++++..    .|.++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~   97 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY   97 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence            46677777777777775    34456677777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249          180 SCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPT  259 (765)
Q Consensus       180 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  259 (765)
                      .+|++++..+|.++.++..+|.++...|++++|+..|+++++..|++......++ ++...|++++|+..+++++...|.
T Consensus        98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~  176 (275)
T 1xnf_A           98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDK  176 (275)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCc
Confidence            7777777777777777777777777777777777777777777777765544444 335557777777777777776666


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHH
Q 004249          260 EADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESI  339 (765)
Q Consensus       260 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  339 (765)
                      +..   ...++.++...++.++|+..+++++...+..                                   .+.++.++
T Consensus       177 ~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------------------------~~~~~~~~  218 (275)
T 1xnf_A          177 EQW---GWNIVEFYLGNISEQTLMERLKADATDNTSL-----------------------------------AEHLSETN  218 (275)
T ss_dssp             CST---HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH-----------------------------------HHHHHHHH
T ss_pred             chH---HHHHHHHHHHhcCHHHHHHHHHHHhcccccc-----------------------------------cccccHHH
Confidence            544   2245555566666666666666554431100                                   02235666


Q ss_pred             HHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 004249          340 NEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYF  395 (765)
Q Consensus       340 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  395 (765)
                      ..+|.++...|++++|+.+|++++..  .|++..   ..+.++...|++++|+..+
T Consensus       219 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~---~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          219 FYLGKYYLSLGDLDSATALFKLAVAN--NVHNFV---EHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTCH---HHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhC--CchhHH---HHHHHHHHHHHHHhhHHHH
Confidence            77777777777777777777777776  565533   2356667777777777665

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.90  E-value=6.9e-23  Score=216.54  Aligned_cols=283  Identities=16%  Similarity=0.136  Sum_probs=176.2

Q ss_pred             cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCC
Q 004249           88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELP----NSYHILGLVHDALGNTAKAMGCYWLAACY------KQK  157 (765)
Q Consensus        88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------~p~  157 (765)
                      +.....++..|..++..|++++|+..|++++...|+++    .++..+|.++...|++++|+.+|++++..      .|.
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            34566667788888888888888888888888888776    47778888888888888888888888776      345


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhCC-----------------HHHHHH
Q 004249          158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA------DPNDFKLKFHLASLYVELGN-----------------FQRAAD  214 (765)
Q Consensus       158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~  214 (765)
                      ...++..+|.++...|++++|+.++++++..      .|....++..+|.++...|+                 +++|+.
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~  204 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE  204 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence            5567777777777777777777777777766      33444566666667666666                 666666


Q ss_pred             HHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 004249          215 VYRQMVQLCP------ENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIEL  288 (765)
Q Consensus       215 ~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  288 (765)
                      ++++++.+.+      ....++..+|.++...|++++|+.++++++...+.....                         
T Consensus       205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------  259 (411)
T 4a1s_A          205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR-------------------------  259 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc-------------------------
Confidence            6655554321      112234444444444444444444444444444433331                         


Q ss_pred             HHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCC-----CChHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 004249          289 VDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENV-----SDHAESINEIADLFKNRELYSTALKYYHMLE  363 (765)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  363 (765)
                               .....++..+|.++...|++++|+..+++++...+     .....++..+|.++...|++++|+.++++++
T Consensus       260 ---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  330 (411)
T 4a1s_A          260 ---------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL  330 (411)
T ss_dssp             ---------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                     01112334444444444444444444444432210     1224566777777777777777777777776


Q ss_pred             hccCC----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC
Q 004249          364 ANAGV----HNDGCLHLKIAECSLALKEREKSIIYFYKALQILED  404 (765)
Q Consensus       364 ~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  404 (765)
                      .....    +....++..+|.++...|++++|..+|++++++.+.
T Consensus       331 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          331 AIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence            65211    112457777888888888888888888888877654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.90  E-value=1.9e-22  Score=213.17  Aligned_cols=237  Identities=14%  Similarity=0.050  Sum_probs=185.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCCH
Q 004249           92 RRMLGDASLHYALGRYEEAISVLHEVIRL------EEELPNSYHILGLVHDALGNTAKAMGCYWLAACY------KQKDS  159 (765)
Q Consensus        92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------~p~~~  159 (765)
                      ..+...|.+++..|++++|+..|++++..      .|....++..+|.++...|++++|+.+|++++..      .|...
T Consensus        87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  166 (411)
T 4a1s_A           87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG  166 (411)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence            45678899999999999999999999988      5667789999999999999999999999999987      45566


Q ss_pred             HHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 004249          160 SLWKLIFPWLIEQGD-----------------TTWAMSCLSEAVKAD------PNDFKLKFHLASLYVELGNFQRAADVY  216 (765)
Q Consensus       160 ~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~  216 (765)
                      .++..+|.++...|+                 +++|+.++++++.+.      +....++..+|.++...|++++|+.++
T Consensus       167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  246 (411)
T 4a1s_A          167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH  246 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            789999999999999                 999999999998763      233568999999999999999999999


Q ss_pred             HHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHHHHHH
Q 004249          217 RQMVQLCPENI------EALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRVLKHI  286 (765)
Q Consensus       217 ~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A~~~~  286 (765)
                      +++++..|...      .++..+|.++...|++++|+..+++++...+....    ..++..+|.++...|++++|+.++
T Consensus       247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  326 (411)
T 4a1s_A          247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH  326 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999876543      37888889999999999999999998888887754    345667888888888888888888


Q ss_pred             HHHHHHhcCC--CCccHHHHHHHHHHHHhcCChhHHHHHHHhhc
Q 004249          287 ELVDLVYYSG--KELLLALKIKAGICHIQLGNTDKAEILLTAIH  328 (765)
Q Consensus       287 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  328 (765)
                      ++++...+..  ......++..+|.++...|++++|..++++++
T Consensus       327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  370 (411)
T 4a1s_A          327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL  370 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            8887763211  11112233344444444444444444444443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.89  E-value=3e-22  Score=205.12  Aligned_cols=283  Identities=16%  Similarity=0.124  Sum_probs=194.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCC
Q 004249           89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELP----NSYHILGLVHDALGNTAKAMGCYWLAACY------KQKD  158 (765)
Q Consensus        89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------~p~~  158 (765)
                      .....++..|..++..|++++|+..|++++...|.++    .++..+|.++...|++++|+.++++++..      .|..
T Consensus         3 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (338)
T 3ro2_A            3 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   82 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence            3456677888999999999999999999999988874    67888899999999999999999888776      3344


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhCC--------------------HHHH
Q 004249          159 SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND------FKLKFHLASLYVELGN--------------------FQRA  212 (765)
Q Consensus       159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A  212 (765)
                      ..++..+|.++...|++++|+..+++++...|..      ..++..+|.++...|+                    +++|
T Consensus        83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A  162 (338)
T 3ro2_A           83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA  162 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence            5677888888888888888888888888764432      3477888888888888                    8888


Q ss_pred             HHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHH
Q 004249          213 ADVYRQMVQLC------PENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRV  282 (765)
Q Consensus       213 ~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A  282 (765)
                      +..+++++...      +....++..+|.++...|++++|+..++++++..+....    ..++..+|.++...|++++|
T Consensus       163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  242 (338)
T 3ro2_A          163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  242 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence            88887776652      222446667777777777777777777777765444322    22455666677777777777


Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHH
Q 004249          283 LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHML  362 (765)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  362 (765)
                      +..+++++...+....                                 .+....++..+|.++...|++++|+.+++++
T Consensus       243 ~~~~~~al~~~~~~~~---------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  289 (338)
T 3ro2_A          243 SEYYKKTLLLARQLKD---------------------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH  289 (338)
T ss_dssp             HHHHHHHHHHHHHTTC---------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcc---------------------------------hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            7777666655221100                                 0112445556666666666666666666666


Q ss_pred             HhccCC----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC
Q 004249          363 EANAGV----HNDGCLHLKIAECSLALKEREKSIIYFYKALQILED  404 (765)
Q Consensus       363 ~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  404 (765)
                      +.....    +....++..+|.++...|++++|..++++++++.+.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            554111    111346667777777777777777777777766554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.89  E-value=3e-22  Score=194.59  Aligned_cols=217  Identities=12%  Similarity=0.070  Sum_probs=177.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 004249           89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPW  168 (765)
Q Consensus        89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~  168 (765)
                      .....++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.+
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  100 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV  100 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            34556678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004249          169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVD  248 (765)
Q Consensus       169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  248 (765)
                      +...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004249          249 ILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICH  311 (765)
Q Consensus       249 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  311 (765)
                      .+++++...|.+..  ++..+|.++...|++++|+..+++++..    .|....++..++.+.
T Consensus       181 ~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~~~l~  237 (243)
T 2q7f_A          181 QFAAVTEQDPGHAD--AFYNAGVTYAYKENREKALEMLDKAIDI----QPDHMLALHAKKLLG  237 (243)
T ss_dssp             HHHHHHHHCTTCHH--HHHHHHHHHHHTTCTTHHHHHHHHHHHH----CTTCHHHHHHHTC--
T ss_pred             HHHHHHHhCcccHH--HHHHHHHHHHHccCHHHHHHHHHHHHcc----CcchHHHHHHHHHHH
Confidence            99999999888755  7889999999999999999999999988    666666666655543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.89  E-value=1.4e-21  Score=193.97  Aligned_cols=248  Identities=13%  Similarity=0.003  Sum_probs=188.1

Q ss_pred             HHHHcCCHHHHHHHHHHHhccC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q 004249          134 VHDALGNTAKAMGCYWLAACYK----QKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNF  209 (765)
Q Consensus       134 ~~~~~g~~~~A~~~~~~a~~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  209 (765)
                      .....|++++|+..|+++++..    |.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence            3445678888888888888873    445678888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249          210 QRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELV  289 (765)
Q Consensus       210 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  289 (765)
                      ++|+..|+++++..|.++.++..+|.++...|++++|+..++++++..|++..  .. ....+....|++++|+..++++
T Consensus        94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~-~~~~~~~~~~~~~~A~~~~~~~  170 (275)
T 1xnf_A           94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF--RS-LWLYLAEQKLDEKQAKEVLKQH  170 (275)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HH-HHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH--HH-HHHHHHHHhcCHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888887754  22 2333445667778888877777


Q ss_pred             HHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCC
Q 004249          290 DLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVH  369 (765)
Q Consensus       290 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  369 (765)
                      +...    +....                                   . ..++.++...++.++|+..+++++..  .|
T Consensus       171 ~~~~----~~~~~-----------------------------------~-~~~~~~~~~~~~~~~a~~~~~~~~~~--~~  208 (275)
T 1xnf_A          171 FEKS----DKEQW-----------------------------------G-WNIVEFYLGNISEQTLMERLKADATD--NT  208 (275)
T ss_dssp             HHHS----CCCST-----------------------------------H-HHHHHHHTTSSCHHHHHHHHHHHCCS--HH
T ss_pred             HhcC----CcchH-----------------------------------H-HHHHHHHHHhcCHHHHHHHHHHHhcc--cc
Confidence            7662    21111                                   1 12444445555556666666666554  33


Q ss_pred             ----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhc
Q 004249          370 ----NDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLL  429 (765)
Q Consensus       370 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  429 (765)
                          .++.++..+|.++...|++++|+..|++++..+|.+...   .+.++...|++++|++.+
T Consensus       209 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          209 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred             cccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence                346889999999999999999999999999999977543   477888999999999887

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.89  E-value=5.8e-22  Score=203.03  Aligned_cols=275  Identities=14%  Similarity=0.084  Sum_probs=174.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHH
Q 004249          127 SYHILGLVHDALGNTAKAMGCYWLAACYKQKDS----SLWKLIFPWLIEQGDTTWAMSCLSEAVKA------DPNDFKLK  196 (765)
Q Consensus       127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~  196 (765)
                      .++..|.++...|++++|+..|++++...|.++    .++..+|.++...|++++|+.++++++..      .|....++
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            445556666666666666666666666665553    44555666666666666666666665544      22223445


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHH
Q 004249          197 FHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FGVIDLLASM  272 (765)
Q Consensus       197 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~  272 (765)
                      ..+|.++...|++++|+..+++++...|                                  ....    ..++..+|.+
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~----------------------------------~~~~~~~~~~~~~~l~~~  132 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISR----------------------------------ELNDKVGEARALYNLGNV  132 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------------------------HTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHH----------------------------------HhcCchHHHHHHHHHHHH
Confidence            5555555555555555555555554433                                  2211    1234445555


Q ss_pred             HHHhcc--------------------HHHHHHHHHHHHHHhc--CCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhccc
Q 004249          273 LVQMNA--------------------YDRVLKHIELVDLVYY--SGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWE  330 (765)
Q Consensus       273 ~~~~~~--------------------~~~A~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  330 (765)
                      +...|+                    +++|+..+++++....  .+.+....++..+|.++...|++++|+..+++++..
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  212 (338)
T 3ro2_A          133 YHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI  212 (338)
T ss_dssp             HHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            555555                    5555555555544322  112223345555666666666666666666655432


Q ss_pred             C-----CCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004249          331 N-----VSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHND------GCLHLKIAECSLALKEREKSIIYFYKAL  399 (765)
Q Consensus       331 ~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al  399 (765)
                      .     .+....++..+|.++...|++++|+.++++++..  .+..      ..++..+|.++...|++++|+.++++++
T Consensus       213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  290 (338)
T 3ro2_A          213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL--ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  290 (338)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            1     1222447888999999999999999999998876  3332      6788999999999999999999999999


Q ss_pred             HHcCCC------HHHHHHHHHHHHHcCCHHHHHHhcCCCCCccc
Q 004249          400 QILEDN------IDARLTLASLLLEDAKDEEAISLLTPPMSLEN  437 (765)
Q Consensus       400 ~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  437 (765)
                      ...+..      ..++..++.++...|++++|..+++++++..+
T Consensus       291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          291 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            886543      45788899999999999999999988876544

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.88  E-value=2.8e-21  Score=178.59  Aligned_cols=168  Identities=14%  Similarity=0.198  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 004249           93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQ  172 (765)
Q Consensus        93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  172 (765)
                      .++..|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.++...
T Consensus         7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (184)
T 3vtx_A            7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMI   86 (184)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHc
Confidence            44566777778888888888888888888888888888888888888888888888888777777777777788888888


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249          173 GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILED  252 (765)
Q Consensus       173 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  252 (765)
                      ++++.|...+.+++..+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.+|...|++++|+..|++
T Consensus        87 ~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  166 (184)
T 3vtx_A           87 DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKK  166 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            88888888888888778877778888888888888888888888888888888877788888888888888888888888


Q ss_pred             HHhcCCCC
Q 004249          253 YLKGHPTE  260 (765)
Q Consensus       253 ~~~~~p~~  260 (765)
                      +++.+|++
T Consensus       167 al~~~p~~  174 (184)
T 3vtx_A          167 ALEKEEKK  174 (184)
T ss_dssp             HHHTTHHH
T ss_pred             HHhCCccC
Confidence            87777754

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.88  E-value=1.4e-21  Score=189.97  Aligned_cols=215  Identities=15%  Similarity=0.080  Sum_probs=160.3

Q ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249          125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV  204 (765)
Q Consensus       125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  204 (765)
                      +..++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|.++.
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  102 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV  102 (243)
T ss_dssp             -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            46788889999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 004249          205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLK  284 (765)
Q Consensus       205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~  284 (765)
                      ..|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+..  ++..+|.++...|++++|+.
T Consensus       103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE--ARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHTCCHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH--HHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999988888889999999999999999999999888887655  67788888888888888888


Q ss_pred             HHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHH
Q 004249          285 HIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLF  346 (765)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~  346 (765)
                      .+++++..    .+....++..+|.++...|++++|+..+++++... |+++.++..++.+.
T Consensus       181 ~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l~  237 (243)
T 2q7f_A          181 QFAAVTEQ----DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAKKLLG  237 (243)
T ss_dssp             HHHHHHHH----CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHHTC--
T ss_pred             HHHHHHHh----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHHHHHH
Confidence            88888877    45556666666666666666666666666666555 55555555555443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.88  E-value=1.1e-20  Score=184.71  Aligned_cols=207  Identities=14%  Similarity=0.050  Sum_probs=194.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI  170 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  170 (765)
                      ...++..|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            66778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004249          171 EQGDTTWAMSCLSEAVK--ADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVD  248 (765)
Q Consensus       171 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  248 (765)
                      ..|++++|+.++++++.  ..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.
T Consensus       117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  196 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ  196 (252)
T ss_dssp             HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999  7888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHH
Q 004249          249 ILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLAL  303 (765)
Q Consensus       249 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  303 (765)
                      .++++++..|.+..  .+..++.++...|++++|...+++++..    .|.....
T Consensus       197 ~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~  245 (252)
T 2ho1_A          197 YYDLFAQGGGQNAR--SLLLGIRLAKVFEDRDTAASYGLQLKRL----YPGSLEY  245 (252)
T ss_dssp             HHHHHHTTSCCCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTSHHH
T ss_pred             HHHHHHHhCcCcHH--HHHHHHHHHHHccCHHHHHHHHHHHHHH----CCCCHHH
Confidence            99999999997765  6789999999999999999999999998    4444443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.88  E-value=3.4e-20  Score=183.53  Aligned_cols=229  Identities=14%  Similarity=0.100  Sum_probs=131.7

Q ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHH
Q 004249          122 EELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE----QGDTTWAMSCLSEAVKADPNDFKLKF  197 (765)
Q Consensus       122 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~  197 (765)
                      |.++.+++.+|.++...|++++|+.+|+++++  |.++.++..+|.++..    .+++++|+.+|+++++.+  ++.++.
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~   78 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH   78 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence            45555666666666666666666666666655  4555556666666666    666666666666665543  455555


Q ss_pred             HHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 004249          198 HLASLYVE----LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK----SGQIESSVDILEDYLKGHPTEADFGVIDLL  269 (765)
Q Consensus       198 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l  269 (765)
                      .+|.++..    .+++++|+.+|+++++.  +++.++..+|.+|..    .+++++|+.+|+++++..+    ..++..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND----GDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC----HHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc----HHHHHHH
Confidence            66666655    55666666666555554  245555555555555    5555555555555555431    1234455


Q ss_pred             HHHHHH----hccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHH
Q 004249          270 ASMLVQ----MNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADL  345 (765)
Q Consensus       270 ~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~  345 (765)
                      |.++..    .+++++|+.+|+++++.                                         .++.++..+|.+
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~-----------------------------------------~~~~a~~~lg~~  191 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDL-----------------------------------------KDSPGCFNAGNM  191 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHT-----------------------------------------TCHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHC-----------------------------------------CCHHHHHHHHHH
Confidence            555544    44555555544444433                                         224556666666


Q ss_pred             HHc----cccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHcCCC
Q 004249          346 FKN----RELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLA----LKEREKSIIYFYKALQILEDN  405 (765)
Q Consensus       346 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~  405 (765)
                      +..    .+++++|+.+|+++++.  .|  +.++..+|.+|..    .+++++|+.+|+++++..|.+
T Consensus       192 ~~~g~~~~~~~~~A~~~~~~a~~~--~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~  255 (273)
T 1ouv_A          192 YHHGEGATKNFKEALARYSKACEL--EN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  255 (273)
T ss_dssp             HHHTCSSCCCHHHHHHHHHHHHHT--TC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             HHcCCCCCccHHHHHHHHHHHHhC--CC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence            666    66666666666666655  33  5666667777766    667777777777777666543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.88  E-value=4.7e-21  Score=177.11  Aligned_cols=168  Identities=14%  Similarity=0.091  Sum_probs=161.6

Q ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004249          123 ELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL  202 (765)
Q Consensus       123 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  202 (765)
                      +++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|.++.++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHH
Q 004249          203 YVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRV  282 (765)
Q Consensus       203 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A  282 (765)
                      +...++++.|...+.+++...|.+..++..+|.++...|++++|+..|+++++.+|.++.  ++..+|.++...|++++|
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIR--AYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhh--HHHHHHHHHHHCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999876  788999999999999999


Q ss_pred             HHHHHHHHHH
Q 004249          283 LKHIELVDLV  292 (765)
Q Consensus       283 ~~~~~~~~~~  292 (765)
                      +..|+++++.
T Consensus       161 ~~~~~~al~~  170 (184)
T 3vtx_A          161 VKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhC
Confidence            9999999988

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.88  E-value=3.8e-20  Score=183.12  Aligned_cols=223  Identities=13%  Similarity=0.065  Sum_probs=202.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDA----LGNTAKAMGCYWLAACYKQKDSSLWKLIF  166 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~la  166 (765)
                      ...++..|..++..|++++|+..|++++.  |.++.+++.+|.++..    .|++++|+.+|+++++.+  ++.++..+|
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg   81 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   81 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence            45567788999999999999999999988  7889999999999999    999999999999999875  899999999


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 004249          167 PWLIE----QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE----LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQ  238 (765)
Q Consensus       167 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  238 (765)
                      .++..    .+++++|+.+|++++..  +++.++..+|.+|..    .+++++|+.+|+++++..  ++.++..+|.+|.
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~  157 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYD  157 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence            99999    99999999999999987  489999999999999    999999999999999975  6888999999999


Q ss_pred             H----cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004249          239 K----SGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQ----MNAYDRVLKHIELVDLVYYSGKELLLALKIKAGIC  310 (765)
Q Consensus       239 ~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~  310 (765)
                      .    .+++++|+.+|+++++..+    ..++..+|.++..    .+++++|+.+|+++++.    .  +..++..+|.+
T Consensus       158 ~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~--~~~a~~~l~~~  227 (273)
T 1ouv_A          158 AGRGTPKDLKKALASYDKACDLKD----SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL----E--NGGGCFNLGAM  227 (273)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT----T--CHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC----C--CHHHHHHHHHH
Confidence            9    9999999999999998743    3378899999999    99999999999999987    2  36778888888


Q ss_pred             HHh----cCChhHHHHHHHhhcccC
Q 004249          311 HIQ----LGNTDKAEILLTAIHWEN  331 (765)
Q Consensus       311 ~~~----~~~~~~A~~~~~~~~~~~  331 (765)
                      +..    .+++++|+.+|++++...
T Consensus       228 ~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          228 QYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHcCCCcccCHHHHHHHHHHHHHcC
Confidence            888    888899999888887665

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.88  E-value=2.8e-20  Score=178.19  Aligned_cols=203  Identities=12%  Similarity=0.064  Sum_probs=178.0

Q ss_pred             cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249           88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP  167 (765)
Q Consensus        88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  167 (765)
                      +.....++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~   84 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW   84 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            44556677888889999999999999999999999989999999999999999999999999999999999999999999


Q ss_pred             HHHHc-CCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004249          168 WLIEQ-GDTTWAMSCLSEAVK--ADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE  244 (765)
Q Consensus       168 ~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  244 (765)
                      ++... |++++|+..+++++.  ..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence            99999 999999999999988  566668888999999999999999999999999999998889999999999999999


Q ss_pred             HHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          245 SSVDILEDYLKGHP-TEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       245 ~A~~~~~~~~~~~p-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                      +|+..+++++...| .+..  .+..++.++...|++++|..+++.+...
T Consensus       165 ~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          165 DADYYFKKYQSRVEVLQAD--DLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HHHHHHHHHHHHHCSCCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            99999999998888 6654  5667888888889999888888888877

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.88  E-value=7.9e-21  Score=198.30  Aligned_cols=313  Identities=12%  Similarity=0.015  Sum_probs=242.9

Q ss_pred             cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC---CchHH--HHH--HHHHHHcCCHHHHH-----------HHHH
Q 004249           88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEE---LPNSY--HIL--GLVHDALGNTAKAM-----------GCYW  149 (765)
Q Consensus        88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~--~~l--~~~~~~~g~~~~A~-----------~~~~  149 (765)
                      +.++...+.....++..+++++|..+++++...-+.   +....  +.+  .......+.++.+.           ..++
T Consensus         9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~   88 (383)
T 3ulq_A            9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL   88 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence            457788899999999999999999999998775543   34333  222  22223334444444           5555


Q ss_pred             HHhccCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC---CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004249          150 LAACYKQKDSS------LWKLIFPWLIEQGDTTWAMSCLSEAVKA---DPN---DFKLKFHLASLYVELGNFQRAADVYR  217 (765)
Q Consensus       150 ~a~~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~  217 (765)
                      ++-. .|....      .++.+|.++...|++++|+..|++++..   .++   ...++..+|.++...|++++|+.+++
T Consensus        89 ~i~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~  167 (383)
T 3ulq_A           89 EIDK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYAR  167 (383)
T ss_dssp             HHHH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4322 333322      3445999999999999999999999987   232   45789999999999999999999999


Q ss_pred             HHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHHHHHH
Q 004249          218 QMVQLCPEN-------IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRVLKHI  286 (765)
Q Consensus       218 ~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A~~~~  286 (765)
                      +++++.+..       ..++..+|.+|...|++++|+..++++++..+....    ..++..+|.++...|++++|+.++
T Consensus       168 ~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~  247 (383)
T 3ulq_A          168 QAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF  247 (383)
T ss_dssp             HHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999875443       457899999999999999999999999988665543    236789999999999999999999


Q ss_pred             HHHHHHhcCC-C-CccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC----CCChHHHHHHHHHHHHcccc---HHHHHH
Q 004249          287 ELVDLVYYSG-K-ELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN----VSDHAESINEIADLFKNREL---YSTALK  357 (765)
Q Consensus       287 ~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~---~~~A~~  357 (765)
                      ++++...... . +....++..+|.++...|++++|+.++++++...    .+.....+..+|.++...|+   +++|+.
T Consensus       248 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~  327 (383)
T 3ulq_A          248 KRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFD  327 (383)
T ss_dssp             HHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHH
T ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            9999864321 3 5667889999999999999999999999987542    13333346779999999998   888888


Q ss_pred             HHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC
Q 004249          358 YYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED  404 (765)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  404 (765)
                      ++++. ..  .|....++..+|.+|...|++++|..+|+++++....
T Consensus       328 ~~~~~-~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~  371 (383)
T 3ulq_A          328 FLESK-ML--YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL  371 (383)
T ss_dssp             HHHHT-TC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHC-cC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            88776 22  4556678889999999999999999999999987543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.87  E-value=2.4e-20  Score=178.65  Aligned_cols=210  Identities=12%  Similarity=0.003  Sum_probs=140.7

Q ss_pred             hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004249          121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLA  200 (765)
Q Consensus       121 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  200 (765)
                      .|.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.++++++...|.+..++..+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~   83 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG   83 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            45556677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHh-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc
Q 004249          201 SLYVEL-GNFQRAADVYRQMVQ--LCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMN  277 (765)
Q Consensus       201 ~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~  277 (765)
                      .++... |++++|+..++++++  ..|.+..++..+|.++...|++++|+..++++++..|.+..  ++..+|.++...|
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~  161 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP--AFKELARTKMLAG  161 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHHT
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch--HHHHHHHHHHHcC
Confidence            777777 777777777777776  44555666777777777777777777777777777666544  5666777777777


Q ss_pred             cHHHHHHHHHHHHHHhcCCCC-ccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHH
Q 004249          278 AYDRVLKHIELVDLVYYSGKE-LLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAE  337 (765)
Q Consensus       278 ~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  337 (765)
                      ++++|+..+++++..    .| .....+..++.++...|+.++|..+++.+.... |+++.
T Consensus       162 ~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~  217 (225)
T 2vq2_A          162 QLGDADYYFKKYQSR----VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF-PYSEE  217 (225)
T ss_dssp             CHHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             CHHHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHH
Confidence            777777777776666    33 444444555555555555555555555554333 44343

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.87  E-value=1.2e-20  Score=189.96  Aligned_cols=222  Identities=9%  Similarity=-0.022  Sum_probs=184.7

Q ss_pred             HHHHHHHHHHHHhhCCCchHHHHHHHHHHH-------cCCH-------HHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHc
Q 004249          108 EEAISVLHEVIRLEEELPNSYHILGLVHDA-------LGNT-------AKAMGCYWLAAC-YKQKDSSLWKLIFPWLIEQ  172 (765)
Q Consensus       108 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~a~~-~~p~~~~~~~~la~~~~~~  172 (765)
                      ++|+..|++++..+|.++.+|+.+|..+..       .|++       ++|+..|++++. ++|++..+|..+|.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            789999999999999999999999998874       5886       899999999998 6899999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 004249          173 GDTTWAMSCLSEAVKADPNDFK-LKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK-SGQIESSVDIL  250 (765)
Q Consensus       173 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~  250 (765)
                      |++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.+..++...+.+... .|++++|+..|
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~  192 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  192 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999888876 889999999999999999999999999888888777766666443 68999999999


Q ss_pred             HHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhccc
Q 004249          251 EDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWE  330 (765)
Q Consensus       251 ~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  330 (765)
                      +++++.+|+++.  +|..++.++...|++++|+..|++++....-+......++..++......|+++.|..++++++..
T Consensus       193 ~~al~~~p~~~~--~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          193 ELGLKKYGDIPE--YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHTTCHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999988888755  778888888888999999999998887511011135667777777777888888888888887765


Q ss_pred             C
Q 004249          331 N  331 (765)
Q Consensus       331 ~  331 (765)
                      .
T Consensus       271 ~  271 (308)
T 2ond_A          271 F  271 (308)
T ss_dssp             T
T ss_pred             c
Confidence            5

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.87  E-value=2.3e-21  Score=207.00  Aligned_cols=211  Identities=12%  Similarity=0.040  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCH-HHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249          107 YEEAISVLHEVIRLEEELPNSYHILGLVHDALGNT-AKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEA  185 (765)
Q Consensus       107 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  185 (765)
                      +++++..+.++....|.++.+++.+|.++...|++ ++|+.+|+++++.+|+++.+|..+|.++...|++++|+.+|+++
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  163 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA  163 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34444444444444444455555555555555555 55555555555555555555555555555555555555555555


Q ss_pred             HhcCCCCHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHH
Q 004249          186 VKADPNDFKLKFHLASLYVEL---------GNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS--------GQIESSVD  248 (765)
Q Consensus       186 l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~  248 (765)
                      ++.+|+ ..++..+|.++...         |++++|+..|+++++.+|+++.++..+|.+|...        |++++|+.
T Consensus       164 l~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~  242 (474)
T 4abn_A          164 LTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS  242 (474)
T ss_dssp             HTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence            555544 44455555555554         5555555555555555555555555555555544        44555555


Q ss_pred             HHHHHHhcCC---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHH
Q 004249          249 ILEDYLKGHP---TEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILL  324 (765)
Q Consensus       249 ~~~~~~~~~p---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  324 (765)
                      .|+++++.+|   .++.  ++..+|.++...|++++|+..|++++..    .|....++..++.++...|++++|+..+
T Consensus       243 ~~~~al~~~p~~~~~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~l----~p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          243 AYAQAEKVDRKASSNPD--LHLNRATLHKYEESYGEALEGFSQAAAL----DPAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHCGGGGGCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCcccCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5555555444   3332  3444555555555555555555555444    3344444444444444444444444433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.87  E-value=1.5e-20  Score=183.76  Aligned_cols=201  Identities=13%  Similarity=0.047  Sum_probs=145.4

Q ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249          125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV  204 (765)
Q Consensus       125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  204 (765)
                      +.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|.++.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            56777778888888888888888888887777777777778888888888888888888887777777777777777777


Q ss_pred             HhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHH
Q 004249          205 ELGNFQRAADVYRQMVQ--LCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRV  282 (765)
Q Consensus       205 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A  282 (765)
                      ..|++++|+.++++++.  ..|.+..++..+|.++...|++++|+..+++++...|.+..  ++..+|.++...|++++|
T Consensus       117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS--VALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH--HHHHHHHHHHHTTCHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHcCCHHHH
Confidence            77777777777777777  66667777777777777777777777777777777776544  566777777777777777


Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC
Q 004249          283 LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN  331 (765)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  331 (765)
                      +..+++++..    .+.....+..++.++...|++++|...+++++...
T Consensus       195 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          195 RQYYDLFAQG----GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHHHHTT----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHh----CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            7777776665    44445555555555555555555555555554443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.87  E-value=2e-20  Score=188.34  Aligned_cols=252  Identities=13%  Similarity=0.053  Sum_probs=193.2

Q ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHh
Q 004249          142 AKAMGCYWLAACYKQKDSSLWKLIFPWLIE-------QGDT-------TWAMSCLSEAVK-ADPNDFKLKFHLASLYVEL  206 (765)
Q Consensus       142 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~  206 (765)
                      ++|+..|++++..+|.++.+|+.+|..+..       .|++       ++|+..|++++. ++|++..+|..+|.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            688899999999999999999999988764       5776       889999999998 6899999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH-hccHHHHHH
Q 004249          207 GNFQRAADVYRQMVQLCPENIE-ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQ-MNAYDRVLK  284 (765)
Q Consensus       207 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~-~~~~~~A~~  284 (765)
                      |++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|....  ++...+.+... .|++++|+.
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~--~~~~~a~~~~~~~~~~~~A~~  190 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH--VYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH--HHHHHHHHHHHTSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999998876 8899999999999999999999999998887644  54444444332 688888888


Q ss_pred             HHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC--CC-ChHHHHHHHHHHHHccccHHHHHHHHHH
Q 004249          285 HIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN--VS-DHAESINEIADLFKNRELYSTALKYYHM  361 (765)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~  361 (765)
                      .|+++++.    .|....++..++.++...|++++|+.+|++++...  +| ....+|..++..+...|++++|..++++
T Consensus       191 ~~~~al~~----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~  266 (308)
T 2ond_A          191 IFELGLKK----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             HHHHHHHH----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHh----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            88888888    45567777788888888888888888888877642  23 3566777777777778888888888888


Q ss_pred             HHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 004249          362 LEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLA  413 (765)
Q Consensus       362 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  413 (765)
                      ++..  .|+++.... ++.+           ..-.+++.++|.++++...||
T Consensus       267 a~~~--~p~~~~~~~-~~~~-----------~~r~~~l~~~P~~~~~ln~lg  304 (308)
T 2ond_A          267 RFTA--FREEYEGKE-TALL-----------VDRYKFMDLYPCSASELKALG  304 (308)
T ss_dssp             HHHH--TTTTTSSCH-HHHH-----------HTTTCBTTBCSSCHHHHHTTT
T ss_pred             HHHH--cccccccch-HHHH-----------HHHHHhcccCCCCHHHHHhcC
Confidence            8777  665432221 1111           111145556777777666554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.86  E-value=4e-18  Score=186.00  Aligned_cols=437  Identities=8%  Similarity=-0.024  Sum_probs=280.7

Q ss_pred             CHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q 004249          106 RYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGD---TTWAMSCL  182 (765)
Q Consensus       106 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~  182 (765)
                      ...+-+..|++.+..+|.+...|..+.......+.++.+...|++++...|.....|...+......|+   ++.+..+|
T Consensus        47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf  126 (679)
T 4e6h_A           47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL  126 (679)
T ss_dssp             CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence            345567788999999999999999999999999999999999999999999999999999999999999   99999999


Q ss_pred             HHHHhcCC--CCHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHh----CCCCHHHHHHHHHHHH---------H
Q 004249          183 SEAVKADP--NDFKLKFHLASLYVELGNF--------QRAADVYRQMVQL----CPENIEALKMGAKLYQ---------K  239 (765)
Q Consensus       183 ~~al~~~p--~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~----~p~~~~~~~~la~~~~---------~  239 (765)
                      ++++...|  .+++.|..........++.        +.....|++++..    ++....+|........         .
T Consensus       127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee  206 (679)
T 4e6h_A          127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE  206 (679)
T ss_dssp             HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence            99999984  6888888877766666553        3344788888764    5656677766665443         3


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-------------HhccHHHHHHHHHHHHHHhcC---CC------
Q 004249          240 SGQIESSVDILEDYLKGHPTEADFGVIDLLASMLV-------------QMNAYDRVLKHIELVDLVYYS---GK------  297 (765)
Q Consensus       240 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~-------------~~~~~~~A~~~~~~~~~~~~~---~~------  297 (765)
                      .++.+.+..+|++++.. |......+|......-.             ...+|+.|...+.........   ..      
T Consensus       207 q~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~  285 (679)
T 4e6h_A          207 QQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ  285 (679)
T ss_dssp             HHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred             HhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence            45678899999999964 54432223322211111             122344444444443222110   00      


Q ss_pred             ------C-------ccHHHHHHHHHHHHhcC-------ChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHH-
Q 004249          298 ------E-------LLLALKIKAGICHIQLG-------NTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTAL-  356 (765)
Q Consensus       298 ------~-------~~~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-  356 (765)
                            |       .....|..........+       ..+.....|++++... |..+.+|+..+..+...|+.++|. 
T Consensus       286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r  364 (679)
T 4e6h_A          286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVIT  364 (679)
T ss_dssp             CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred             chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHH
Confidence                  0       00122222222211111       0123345666666655 666777777777777777777775 


Q ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc-----------CC-----------CHHHHHHHHH
Q 004249          357 KYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL-----------ED-----------NIDARLTLAS  414 (765)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------p~-----------~~~~~~~l~~  414 (765)
                      .+|++++..  .|.+..+|..++.+....|+++.|...|++++...           |.           ...+|...+.
T Consensus       365 ~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~  442 (679)
T 4e6h_A          365 KYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN  442 (679)
T ss_dssp             HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence            777777766  67777777777777777777777777777777642           32           2345666666


Q ss_pred             HHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcch-hHHHHHhhHHHHhhhcccccccChhh
Q 004249          415 LLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGM-IEGFVDMLLPLVCESSHQEETFNHEE  493 (765)
Q Consensus       415 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~l~~~~~~~~  493 (765)
                      +..+.|..+.|..+|.++++..|..           ...++...+.+....+. ++.|..+|..+++         ..|+
T Consensus       443 ~erR~~~l~~AR~vf~~A~~~~~~~-----------~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk---------~~p~  502 (679)
T 4e6h_A          443 TMKRIQGLAASRKIFGKCRRLKKLV-----------TPDIYLENAYIEYHISKDTKTACKVLELGLK---------YFAT  502 (679)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHTGGGS-----------CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH---------HHTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCC-----------ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---------HCCC
Confidence            6666777777777777766541111           02444555555555443 6777777777765         3455


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCch
Q 004249          494 HRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRL  568 (765)
Q Consensus       494 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~  568 (765)
                      ++..+..++......|+.+.|..+|++++...+.  +.....++..........|+.+.+...+.++.+.+|+++
T Consensus       503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~--~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~  575 (679)
T 4e6h_A          503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISD--SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN  575 (679)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS--TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred             chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            5666666666666677777777777777766521  123444444444455566777777777777777777664

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.85  E-value=2.3e-19  Score=172.16  Aligned_cols=206  Identities=12%  Similarity=0.133  Sum_probs=174.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249           92 RRMLGDASLHYALGRYEEAISVLHEVIRLEE-ELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI  170 (765)
Q Consensus        92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  170 (765)
                      ..++..|..++..|++++|+..|++++..+| .+..+++.+|.++...|++++|+..|++++..+|++..++..+|.++.
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   87 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR   87 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            5677888999999999999999999999998 888899999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcC
Q 004249          171 EQGDTTWAMSCLSEAVKADPNDF-------KLKFHLASLYVELGNFQRAADVYRQMVQLCPE--NIEALKMGAKLYQKSG  241 (765)
Q Consensus       171 ~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g  241 (765)
                      ..|++++|+..+++++..+|+++       .++..+|.++...|++++|+..|+++++.+|+  ++.++..+|.+|...|
T Consensus        88 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~  167 (228)
T 4i17_A           88 DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG  167 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Confidence            99999999999999999999988       66899999999999999999999999999999  8899999999987655


Q ss_pred             CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004249          242 QIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGIC  310 (765)
Q Consensus       242 ~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~  310 (765)
                           ...++++....+....    ...+......+.+++|+.+++++++.    .|....+...++.+
T Consensus       168 -----~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~A~~~~~~a~~l----~p~~~~~~~~l~~i  223 (228)
T 4i17_A          168 -----ADVLRKATPLASSNKE----KYASEKAKADAAFKKAVDYLGEAVTL----SPNRTEIKQMQDQV  223 (228)
T ss_dssp             -----HHHHHHHGGGTTTCHH----HHHHHHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHH
T ss_pred             -----HHHHHHHHhcccCCHH----HHHHHHHHHHHHHHHHHHHHHHHhhc----CCCCHHHHHHHHHH
Confidence                 3456666666655422    24455566678888999999999888    66666666655554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.85  E-value=3e-20  Score=198.44  Aligned_cols=219  Identities=16%  Similarity=0.053  Sum_probs=173.3

Q ss_pred             CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004249          139 GNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDT-TWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR  217 (765)
Q Consensus       139 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  217 (765)
                      +.+++++..+.......|.+..+++.+|.++...|++ ++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|+
T Consensus        82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3466777777777777788888888888888888888 888888888888888888888888888888888888888888


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh--------ccHH
Q 004249          218 QMVQLCPENIEALKMGAKLYQKS---------GQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM--------NAYD  280 (765)
Q Consensus       218 ~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~--------~~~~  280 (765)
                      ++++.+|+ ..++..+|.++...         |++++|+..|+++++.+|++..  +|..+|.++...        |+++
T Consensus       162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR--SWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHhhccccchHH
Confidence            88888887 67788888888888         8888888888888888777655  677777777777        7777


Q ss_pred             HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHH
Q 004249          281 RVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYH  360 (765)
Q Consensus       281 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  360 (765)
                      +|+..|++++..    .|.                                .+.++.++..+|.++...|++++|+..|+
T Consensus       239 ~A~~~~~~al~~----~p~--------------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  282 (474)
T 4abn_A          239 QALSAYAQAEKV----DRK--------------------------------ASSNPDLHLNRATLHKYEESYGEALEGFS  282 (474)
T ss_dssp             HHHHHHHHHHHH----CGG--------------------------------GGGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHh----CCC--------------------------------cccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            777777777666    220                                02567788888888888888888888888


Q ss_pred             HHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249          361 MLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKA  398 (765)
Q Consensus       361 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  398 (765)
                      +++.+  .|+++.++..++.++...|++++|+..+.++
T Consensus       283 ~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          283 QAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            88888  7888888888888888888888888877665

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.84  E-value=3.2e-20  Score=205.31  Aligned_cols=170  Identities=19%  Similarity=0.163  Sum_probs=94.1

Q ss_pred             hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004249          121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLA  200 (765)
Q Consensus       121 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  200 (765)
                      .|++++++..+|.++..+|++++|+.+|+++++++|++..++..+|.++..+|++++|+..|+++++++|+++.++.++|
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg   84 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG   84 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHH
Q 004249          201 SLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYD  280 (765)
Q Consensus       201 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~  280 (765)
                      .++..+|++++|+..|+++++++|++..++.++|.+|...|++++|+..|+++++++|++..  ++..+|.++...|+++
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~--a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD--AYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH--HHHHHHHHHHHTTCCT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHhhhhhHHHhcccHH
Confidence            55555555555555555555555555555555555555555555555555555555555444  4455555555555555


Q ss_pred             HHHHHHHHHHHH
Q 004249          281 RVLKHIELVDLV  292 (765)
Q Consensus       281 ~A~~~~~~~~~~  292 (765)
                      +|++.++++++.
T Consensus       163 ~A~~~~~kal~l  174 (723)
T 4gyw_A          163 DYDERMKKLVSI  174 (723)
T ss_dssp             THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            555555555544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.84  E-value=5.6e-20  Score=203.33  Aligned_cols=173  Identities=18%  Similarity=0.160  Sum_probs=166.5

Q ss_pred             CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249           87 VCPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIF  166 (765)
Q Consensus        87 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la  166 (765)
                      .|..+..+...|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|++..++..+|
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg   84 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG   84 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45567778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249          167 PWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESS  246 (765)
Q Consensus       167 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  246 (765)
                      .++..+|++++|+..|+++++++|++..++..+|.++..+|++++|+..|+++++++|+++.++.++|.++...|++++|
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCC
Q 004249          247 VDILEDYLKGHPT  259 (765)
Q Consensus       247 ~~~~~~~~~~~p~  259 (765)
                      ++.++++++..|+
T Consensus       165 ~~~~~kal~l~~~  177 (723)
T 4gyw_A          165 DERMKKLVSIVAD  177 (723)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChh
Confidence            9999999886543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.84  E-value=3.6e-20  Score=186.52  Aligned_cols=289  Identities=12%  Similarity=0.109  Sum_probs=152.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004249          101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMS  180 (765)
Q Consensus       101 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~  180 (765)
                      .-..|+.++|.++++++     +.+.+|..+|.++...|++++|++.|.++     .++..+..++..+...|++++|+.
T Consensus        13 l~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~   82 (449)
T 1b89_A           13 IEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVK   82 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHH
Confidence            34678899999999988     34579999999999999999999999774     466789999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249          181 CLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTE  260 (765)
Q Consensus       181 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  260 (765)
                      +++.+.+..+ ++.+...++.+|.+.|++.++.++++.     | +..++..+|..+...|+|++|+.+|.++       
T Consensus        83 yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------  148 (449)
T 1b89_A           83 YLQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV-------  148 (449)
T ss_dssp             ---------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT-------
T ss_pred             HHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence            9999988544 477788999999999999999988852     4 3458999999999999999999999987       


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHH
Q 004249          261 ADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESIN  340 (765)
Q Consensus       261 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  340 (765)
                       .  .|..++.++.++|++++|++.++++         .....|...+.++...|+++.|..+...++     .+++-..
T Consensus       149 -~--n~~~LA~~L~~Lg~yq~AVea~~KA---------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~  211 (449)
T 1b89_A          149 -S--NFGRLASTLVHLGEYQAAVDGARKA---------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELE  211 (449)
T ss_dssp             -T--CHHHHHHHHHTTTCHHHHHHHHHHH---------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHH
T ss_pred             -h--hHHHHHHHHHHhccHHHHHHHHHHc---------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHH
Confidence             1  4779999999999999999999998         246778888999999999999988777643     3345556


Q ss_pred             HHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHcC-----CCHHHHHHHH
Q 004249          341 EIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLA--LKEREKSIIYFYKALQILE-----DNIDARLTLA  413 (765)
Q Consensus       341 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~  413 (765)
                      .++..|.+.|++++|+.+++.++.+  ++....++..+|.+|.+  .++..+.++.|...+.+.|     .+...|..+.
T Consensus       212 ~lv~~Yek~G~~eEai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~  289 (449)
T 1b89_A          212 ELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV  289 (449)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999999  89999999999998876  4678888999988888878     7888999999


Q ss_pred             HHHHHcCCHHHHHHhcCCC
Q 004249          414 SLLLEDAKDEEAISLLTPP  432 (765)
Q Consensus       414 ~~~~~~g~~~~A~~~~~~~  432 (765)
                      .+|...++++.|...+-+.
T Consensus       290 ~ly~~~~e~d~A~~tm~~h  308 (449)
T 1b89_A          290 FLYDKYEEYDNAIITMMNH  308 (449)
T ss_dssp             HHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHhhchHHHHHHHHHhC
Confidence            9999999999998866433

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.83  E-value=2.2e-18  Score=165.32  Aligned_cols=219  Identities=16%  Similarity=0.108  Sum_probs=153.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 004249          156 QKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADP-NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGA  234 (765)
Q Consensus       156 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  234 (765)
                      +.++..++.+|.++...|++++|+..|++++..+| .+..+++.+|.++...|++++|+..|+++++.+|+++.++..+|
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   83 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS   83 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            45667888888888888888888888888888887 77788888888888888888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc
Q 004249          235 KLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQL  314 (765)
Q Consensus       235 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  314 (765)
                      .++...|++++|+..++++++.+|+++..  +..++                               .++..+|.++...
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~~~-------------------------------~~~~~~g~~~~~~  130 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPGNATI--EKLYA-------------------------------IYYLKEGQKFQQA  130 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHH--HHHHH-------------------------------HHHHHHHHHHHHT
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCcHHH--HHHHH-------------------------------HHHHHHhHHHHHh
Confidence            88888888888888888888888876531  11111                               1334445555566


Q ss_pred             CChhHHHHHHHhhcccCCCC--hHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHH
Q 004249          315 GNTDKAEILLTAIHWENVSD--HAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSI  392 (765)
Q Consensus       315 ~~~~~A~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  392 (765)
                      |++++|+..|++++... |.  ++.++..+|.++...|+     ..++++..+  .+..+..+  .+......+.+++|+
T Consensus       131 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~--~~~~~~~~--~~~~~~~~~~~~~A~  200 (228)
T 4i17_A          131 GNIEKAEENYKHATDVT-SKKWKTDALYSLGVLFYNNGA-----DVLRKATPL--ASSNKEKY--ASEKAKADAAFKKAV  200 (228)
T ss_dssp             TCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGG--TTTCHHHH--HHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHHHHHHHH-----HHHHHHHhc--ccCCHHHH--HHHHHHHHHHHHHHH
Confidence            66666666666665554 55  56667777777654443     344555555  44443333  344455667788888


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHH
Q 004249          393 IYFYKALQILEDNIDARLTLASLLL  417 (765)
Q Consensus       393 ~~~~~al~~~p~~~~~~~~l~~~~~  417 (765)
                      .+|+++++++|++..+...++.+..
T Consensus       201 ~~~~~a~~l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          201 DYLGEAVTLSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            8888888888888887777776643

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.83  E-value=3.9e-17  Score=178.21  Aligned_cols=458  Identities=11%  Similarity=0.029  Sum_probs=306.0

Q ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC---HHHHHHHHH
Q 004249          141 TAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN---FQRAADVYR  217 (765)
Q Consensus       141 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~  217 (765)
                      ..+-+..|++.+..+|.+...|..++......+.+..+..+|++++...|.....|...+......|+   ++.+..+|+
T Consensus        48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe  127 (679)
T 4e6h_A           48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA  127 (679)
T ss_dssp             CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence            45667788888888999999999988888888889999999999999999998888888888888888   899999999


Q ss_pred             HHHHhCC--CCHHHHHHHHHHHHHcCCH----HH----HHHHHHHHHhcCCC-CCC-HHHHHHHHHHHH---------Hh
Q 004249          218 QMVQLCP--ENIEALKMGAKLYQKSGQI----ES----SVDILEDYLKGHPT-EAD-FGVIDLLASMLV---------QM  276 (765)
Q Consensus       218 ~al~~~p--~~~~~~~~la~~~~~~g~~----~~----A~~~~~~~~~~~p~-~~~-~~~~~~l~~~~~---------~~  276 (765)
                      +++...|  .++.+|..........++.    ++    ....|++++..-+. ++. ..+|........         ..
T Consensus       128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq  207 (679)
T 4e6h_A          128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ  207 (679)
T ss_dssp             HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence            9988884  5677777776666665554    23    34677777765433 222 336666666644         24


Q ss_pred             ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHH
Q 004249          277 NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTAL  356 (765)
Q Consensus       277 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  356 (765)
                      ++.+.+..+|++++.. |.  ......+..........+. ..+...+..                     ...+|..|.
T Consensus       208 ~~~~~~R~iy~raL~i-P~--~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar  262 (679)
T 4e6h_A          208 QRVQYIRKLYKTLLCQ-PM--DCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNAR  262 (679)
T ss_dssp             HHHHHHHHHHHHHTTS-CC--SSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhC-cc--HHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHH
Confidence            5667778888887754 11  1112222222111111111 011111110                     112334444


Q ss_pred             HHHHHHHhc----cC-CCC-------------------CHHHHHHHHHHHHHhc-------cHHHHHHHHHHHHHHcCCC
Q 004249          357 KYYHMLEAN----AG-VHN-------------------DGCLHLKIAECSLALK-------EREKSIIYFYKALQILEDN  405 (765)
Q Consensus       357 ~~~~~~~~~----~~-~~~-------------------~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~  405 (765)
                      ..+......    .. .|.                   ....|..........+       ........|++++...|.+
T Consensus       263 ~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~  342 (679)
T 4e6h_A          263 SLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFA  342 (679)
T ss_dssp             HHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCC
Confidence            444332111    00 011                   0134444433322211       1344567899999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHH-HhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcc
Q 004249          406 IDARLTLASLLLEDAKDEEAI-SLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSH  484 (765)
Q Consensus       406 ~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  484 (765)
                      ++.|+..+..+...|+.++|. .+|++++...|.+            ..+++.++.+....|+++.|.++|.+++.....
T Consensus       343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s------------~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~  410 (679)
T 4e6h_A          343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS------------AVLAFSLSEQYELNTKIPEIETTILSCIDRIHL  410 (679)
T ss_dssp             HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999988897 9999988877766            467788889999999999999999888853100


Q ss_pred             -ccccc-Chh-----------hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhccccc-CCh
Q 004249          485 -QEETF-NHE-----------EHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNT-TDP  550 (765)
Q Consensus       485 -l~~~~-~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-g~~  550 (765)
                       ...+- ..|           ....++..++....+.|..+.|..+|.+|++..+    .....++...+.+.+.. ++.
T Consensus       411 ~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~----~~~~~lyi~~A~lE~~~~~d~  486 (679)
T 4e6h_A          411 DLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK----LVTPDIYLENAYIEYHISKDT  486 (679)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG----GSCTHHHHHHHHHHHTTTSCC
T ss_pred             HhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHHhCCCH
Confidence             00000 002           2455788888888889999999999999998731    21122333333244444 559


Q ss_pred             hhHHHHHHHHHHhCCCchhhhHHHHHHHhhhhhhhhHHHHHHHHHHHhcCC---CCCchhhhhhhhhhhhhHHHHHHHHH
Q 004249          551 KLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRD---FVPPIIISGHQFTMISHHQDAAREYL  627 (765)
Q Consensus       551 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~~g~~~~~~~~~~~A~~~~~  627 (765)
                      +.|...|..+++.+|+++..|..++.+....++. +.+...+.+.+...|+   ...++......-...|+...+...+.
T Consensus       487 e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~-~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~  565 (679)
T 4e6h_A          487 KTACKVLELGLKYFATDGEYINKYLDFLIYVNEE-SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK  565 (679)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999887766654 6888899999988774   22233444444456799999999999


Q ss_pred             HHHhhCCCChHHH
Q 004249          628 EAYKLLPENPLIN  640 (765)
Q Consensus       628 ~a~~~~p~~~~~~  640 (765)
                      ++.+..|+++.+.
T Consensus       566 R~~~~~P~~~~~~  578 (679)
T 4e6h_A          566 RFFEKFPEVNKLE  578 (679)
T ss_dssp             HHHHHSTTCCHHH
T ss_pred             HHHHhCCCCcHHH
Confidence            9999999987554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.83  E-value=2.6e-20  Score=187.48  Aligned_cols=385  Identities=10%  Similarity=0.027  Sum_probs=192.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH
Q 004249          133 LVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRA  212 (765)
Q Consensus       133 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  212 (765)
                      ......|+.++|.+++++.     +.+.+|..+|.++...|++++|++.|.++     .++..+...+..+...|++++|
T Consensus        11 ~ll~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeA   80 (449)
T 1b89_A           11 VLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEEL   80 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHH
Confidence            3445778999999999988     34569999999999999999999999764     4677899999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          213 ADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       213 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                      +.+++.+.+..++ +.+...++.+|.+.|++.++.++++     .|+. .  .|..+|..+...|.|++|..+|.++   
T Consensus        81 i~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~-~--a~~~IGd~~~~~g~yeeA~~~Y~~a---  148 (449)
T 1b89_A           81 VKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPNN-A--HIQQVGDRCYDEKMYDAAKLLYNNV---  148 (449)
T ss_dssp             -----------------------------CHHHHTTTTT-----CC-------------------CTTTHHHHHHHT---
T ss_pred             HHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCcH-H--HHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence            9999999886444 6778899999999999999888774     2433 2  6889999999999999999999866   


Q ss_pred             hcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCH
Q 004249          293 YYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDG  372 (765)
Q Consensus       293 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  372 (765)
                               ..+..++.++.++|++++|++.+.++      .++.+|..++.++...|+++.|..+...++ .     ++
T Consensus       149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~-----~a  207 (449)
T 1b89_A          149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-V-----HA  207 (449)
T ss_dssp             ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-T-----CH
T ss_pred             ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-h-----CH
Confidence                     35679999999999999999999998      258899999999999999999977766422 2     44


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCHHHHHHhcCCCCCccccccCcccchhhhh
Q 004249          373 CLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLED--AKDEEAISLLTPPMSLENKYVNSDKTHAWWL  450 (765)
Q Consensus       373 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  450 (765)
                      +-...+..+|.+.|++++|+..+++++.+++.....+..++.+|.+-  |+..+.++.|...++..+--       ..-.
T Consensus       208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~-------~~~~  280 (449)
T 1b89_A          208 DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL-------RAAE  280 (449)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHH-------HHHH
T ss_pred             hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHH-------HHHH
Confidence            44557889999999999999999999999999999999999999764  68889999999888876611       1111


Q ss_pred             hhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcc---cccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccC
Q 004249          451 NIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSH---QEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYG  527 (765)
Q Consensus       451 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  527 (765)
                      +...|..+.-+|...++++.|+........+..+   ...++..+.+.++++.....|.  +....++..+..++.-.  
T Consensus       281 ~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~--  356 (449)
T 1b89_A          281 QAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPR--  356 (449)
T ss_dssp             TTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGG--
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhc--
Confidence            2567888999999999999998755433221111   1223345566777777776665  55556666666666311  


Q ss_pred             CCCchHHHHHHHHhhcccccCChhhHHHHHHHHHHhCCCchhhhHHHHHHHhh
Q 004249          528 KFPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSR  580 (765)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~  580 (765)
                         -++....    ....+.|+..-...+++.+...  ++..+-..+..++..
T Consensus       357 ---ld~~r~v----~~~~~~~~l~l~~~yl~~v~~~--n~~~vnealn~l~ie  400 (449)
T 1b89_A          357 ---LDHTRAV----NYFSKVKQLPLVKPYLRSVQNH--NNKSVNESLNNLFIT  400 (449)
T ss_dssp             ---CCHHHHH----HHHHHTTCTTTTHHHHHHHHTT--CCHHHHHHHHHHHHH
T ss_pred             ---cCcHHHH----HHHHHcCCcHHHHHHHHHHHHh--hHHHHHHHHHHHHHh
Confidence               1111111    1223456666666666544432  333343345555543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.83  E-value=1.3e-19  Score=188.95  Aligned_cols=306  Identities=10%  Similarity=-0.005  Sum_probs=234.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCC---CCHHHH--HHH--HHHHHHcCCHHHHH-----------HHHHHHHhcCC
Q 004249          129 HILGLVHDALGNTAKAMGCYWLAACYKQ---KDSSLW--KLI--FPWLIEQGDTTWAM-----------SCLSEAVKADP  190 (765)
Q Consensus       129 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~--~~l--a~~~~~~g~~~~A~-----------~~~~~al~~~p  190 (765)
                      ..-...+...+++++|...++.+...-+   .+....  +.+  .+.....+++..+.           ..++++-. .|
T Consensus        16 l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~-~~   94 (383)
T 3ulq_A           16 INEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK-KQ   94 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH-HT
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh-cC
Confidence            3334556788999999999998755321   344433  222  22233344444444           55555433 33


Q ss_pred             CCHH------HHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004249          191 NDFK------LKFHLASLYVELGNFQRAADVYRQMVQL---CPE---NIEALKMGAKLYQKSGQIESSVDILEDYLKGHP  258 (765)
Q Consensus       191 ~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  258 (765)
                      ....      .++.+|.++...|++++|+..|++++..   .++   .+.++..+|.+|...|++++|+.+++++++..+
T Consensus        95 ~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~  174 (383)
T 3ulq_A           95 ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK  174 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            3333      3445999999999999999999999987   233   357899999999999999999999999999866


Q ss_pred             CCCC-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHhcCChhHHHHHHHhhcc--
Q 004249          259 TEAD-----FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSG--KELLLALKIKAGICHIQLGNTDKAEILLTAIHW--  329 (765)
Q Consensus       259 ~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--  329 (765)
                      ....     ..++..+|.++...|++++|+..+++++...+..  .+....++..+|.++...|++++|+.++++++.  
T Consensus       175 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  254 (383)
T 3ulq_A          175 EHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF  254 (383)
T ss_dssp             TCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            6543     3467899999999999999999999999885432  223345788999999999999999999999886  


Q ss_pred             ---cCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccC---CCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH
Q 004249          330 ---ENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAG---VHNDGCLHLKIAECSLALKE---REKSIIYFYKALQ  400 (765)
Q Consensus       330 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~  400 (765)
                         ...+..+.++..+|.++...|++++|+.++++++.+..   +|.....+..+|.++...|+   +.+|+..+++. .
T Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~  333 (383)
T 3ulq_A          255 EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-M  333 (383)
T ss_dssp             HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-T
T ss_pred             HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-c
Confidence               33367788999999999999999999999999987731   12223345679999999999   88888888876 3


Q ss_pred             HcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCcc
Q 004249          401 ILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLE  436 (765)
Q Consensus       401 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  436 (765)
                      ..|....++..+|.+|...|++++|..+++++++..
T Consensus       334 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  369 (383)
T 3ulq_A          334 LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR  369 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            335556788899999999999999999998877643

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.82  E-value=2.2e-18  Score=179.28  Aligned_cols=312  Identities=13%  Similarity=0.003  Sum_probs=233.0

Q ss_pred             cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC---CCchHHHHHHHHHH----HcCCHHHHH---------HHHHHH
Q 004249           88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEE---ELPNSYHILGLVHD----ALGNTAKAM---------GCYWLA  151 (765)
Q Consensus        88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~----~~g~~~~A~---------~~~~~a  151 (765)
                      ++++...+..=..++..+++++|..+++++....+   .+.......+...+    ..+.+..+.         ..++++
T Consensus         9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i   88 (378)
T 3q15_A            9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI   88 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence            56777888877778999999999999999876443   23344322222221    222322222         444443


Q ss_pred             hccC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004249          152 ACYK-QKD----SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADP------NDFKLKFHLASLYVELGNFQRAADVYRQMV  220 (765)
Q Consensus       152 ~~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al  220 (765)
                      -... +.+    ...++.+|..+...|++++|+..|++++...+      ....++..+|.++...|+++.|+..+++++
T Consensus        89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al  168 (378)
T 3q15_A           89 ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL  168 (378)
T ss_dssp             HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            2221 111    12566789999999999999999999998632      235688999999999999999999999999


Q ss_pred             HhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 004249          221 QLCPEN-------IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRVLKHIELV  289 (765)
Q Consensus       221 ~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~  289 (765)
                      ...+..       ..++..+|.+|...|++++|+..++++++..+....    ..++..+|.++...|++++|+.+++++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a  248 (378)
T 3q15_A          169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA  248 (378)
T ss_dssp             HHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            875432       457889999999999999999999999986543222    346779999999999999999999999


Q ss_pred             HHHhcC-CCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC----CCChHHHHHHHHHHHHcccc---HHHHHHHHHH
Q 004249          290 DLVYYS-GKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN----VSDHAESINEIADLFKNREL---YSTALKYYHM  361 (765)
Q Consensus       290 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~  361 (765)
                      +..... ..+....++..+|.++...|++++|+.++++++...    .+.....+..++.++...|+   +.+|+.++++
T Consensus       249 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~  328 (378)
T 3q15_A          249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK  328 (378)
T ss_dssp             HHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            985331 245557888999999999999999999999987542    24445566778888888888   8888888876


Q ss_pred             HHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc
Q 004249          362 LEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQIL  402 (765)
Q Consensus       362 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  402 (765)
                      .. .  .+....++..+|.+|...|++++|..+|+++++..
T Consensus       329 ~~-~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          329 KN-L--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             TT-C--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CC-C--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            32 2  34556778889999999999999999999998764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.82  E-value=2.7e-19  Score=175.62  Aligned_cols=172  Identities=19%  Similarity=0.168  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEEL---PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWK  163 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~  163 (765)
                      ....++..|..++..|++++|+..|++++...|.+   +.+++.+|.++...|++++|+..|++++...|++   +.+++
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            34566777788888888888888888888888877   6788888888888888888888888888877644   46777


Q ss_pred             HHHHHHHH--------cCCHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHhCCHHHHHHHHHH
Q 004249          164 LIFPWLIE--------QGDTTWAMSCLSEAVKADPNDFKLK-----------------FHLASLYVELGNFQRAADVYRQ  218 (765)
Q Consensus       164 ~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~  218 (765)
                      .+|.++..        .|++++|+..|++++..+|+++.+.                 +.+|.++...|++++|+..|++
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  173 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA  173 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            88888888        8888888888888888888775544                 4445555555555555555555


Q ss_pred             HHHhCCCC---HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCC
Q 004249          219 MVQLCPEN---IEALKMGAKLYQKS----------GQIESSVDILEDYLKGHPTEA  261 (765)
Q Consensus       219 al~~~p~~---~~~~~~la~~~~~~----------g~~~~A~~~~~~~~~~~p~~~  261 (765)
                      +++..|++   +.+++.+|.+|...          |++++|+..|+++++.+|+++
T Consensus       174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  229 (261)
T 3qky_A          174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP  229 (261)
T ss_dssp             HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence            55555442   33455555555444          444555555555555555443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.82  E-value=2.4e-18  Score=168.63  Aligned_cols=192  Identities=11%  Similarity=0.066  Sum_probs=165.3

Q ss_pred             CcHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhCCCchHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCHHHHH
Q 004249           87 VCPEIRRMLGDASLHYALGRY-EEAISVLHEVIRLEEELPNSYHILGLVHDALG--NTAKAMGCYWLAACYKQKDSSLWK  163 (765)
Q Consensus        87 ~~~~~~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~  163 (765)
                      -+++....++........|.+ ++|+..+.+++.++|++..+|...+.++..+|  ++++++.++..++..+|++..+|.
T Consensus        28 y~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~  107 (306)
T 3dra_A           28 YDEDYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWN  107 (306)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHH
T ss_pred             eCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHH
Confidence            367777777777777888887 58999999999999999999999999999999  999999999999999999999999


Q ss_pred             HHHHHH----HHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHhCCCCHHHHHHHH
Q 004249          164 LIFPWL----IEQ---GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQ--RAADVYRQMVQLCPENIEALKMGA  234 (765)
Q Consensus       164 ~la~~~----~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la  234 (765)
                      ..+.++    ...   +++++++.++.+++..+|.+..+|...+.+....|.++  +++.++.++++.+|.+..+|...+
T Consensus       108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~  187 (306)
T 3dra_A          108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRF  187 (306)
T ss_dssp             HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            999888    666   78999999999999999999999999999999999888  999999999999999999999998


Q ss_pred             HHHHHcCC------HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHH
Q 004249          235 KLYQKSGQ------IESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYD  280 (765)
Q Consensus       235 ~~~~~~g~------~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~  280 (765)
                      .++...+.      ++++++++.+++..+|.+..  +|+.++.++...|+..
T Consensus       188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S--aW~y~~~ll~~~~~~~  237 (306)
T 3dra_A          188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS--TWNYLLGIHERFDRSI  237 (306)
T ss_dssp             HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH--HHHHHHHHHHHTTCCG
T ss_pred             HHHHhccccchhhhHHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHhcCCCh
Confidence            88888776      77777777777777777665  6667777766666533

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.82  E-value=9.9e-19  Score=171.57  Aligned_cols=200  Identities=13%  Similarity=0.114  Sum_probs=165.1

Q ss_pred             HhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---
Q 004249          119 RLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND---  192 (765)
Q Consensus       119 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---  192 (765)
                      ...|.++..++.+|..++..|++++|+..|++++...|.+   +.+++.+|.++...|++++|+..|++++...|++   
T Consensus         9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~   88 (261)
T 3qky_A            9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV   88 (261)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence            4578889999999999999999999999999999999998   8999999999999999999999999999998754   


Q ss_pred             HHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHH
Q 004249          193 FKLKFHLASLYVE--------LGNFQRAADVYRQMVQLCPENIEAL-----------------KMGAKLYQKSGQIESSV  247 (765)
Q Consensus       193 ~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~  247 (765)
                      +.+++.+|.++..        .|++++|+..|+++++..|+++.+.                 +.+|.+|...|++++|+
T Consensus        89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  168 (261)
T 3qky_A           89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA  168 (261)
T ss_dssp             HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence            6789999999999        9999999999999999999886555                 77788888888888888


Q ss_pred             HHHHHHHhcCCCCCC-HHHHHHHHHHHHHh----------ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC
Q 004249          248 DILEDYLKGHPTEAD-FGVIDLLASMLVQM----------NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGN  316 (765)
Q Consensus       248 ~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  316 (765)
                      ..|+++++..|++.. ..++..+|.++...          |++++|+..|++++..+| +.+....+...++.++...++
T Consensus       169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~l~~~~~~~~~  247 (261)
T 3qky_A          169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-DSPLLRTAEELYTRARQRLTE  247 (261)
T ss_dssp             HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHHHH
Confidence            888888888887654 34677888888876          888888888888888832 233334455555666555555


Q ss_pred             hhH
Q 004249          317 TDK  319 (765)
Q Consensus       317 ~~~  319 (765)
                      ++.
T Consensus       248 ~~~  250 (261)
T 3qky_A          248 LEG  250 (261)
T ss_dssp             HHT
T ss_pred             hhh
Confidence            443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.81  E-value=1.5e-17  Score=172.80  Aligned_cols=273  Identities=14%  Similarity=0.016  Sum_probs=175.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCch-----HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--H----HH
Q 004249           93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPN-----SYHILGLVHDALGNTAKAMGCYWLAACYKQKD--S----SL  161 (765)
Q Consensus        93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~--~----~~  161 (765)
                      ..+..|..++..|++++|+..+++++...|....     ++..+|.++...|++++|+..+++++...|..  .    .+
T Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   95 (373)
T 1hz4_A           16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   95 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            3456678888889999999999888887775532     56778888888888888888888888765432  1    33


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-----HH
Q 004249          162 WKLIFPWLIEQGDTTWAMSCLSEAVKAD--------PNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN-----IE  228 (765)
Q Consensus       162 ~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~  228 (765)
                      +..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|...+++++...+..     ..
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  175 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  175 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence            5667888888888888888888887753        2234556677888888888888888888887776642     34


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHH----HHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHH
Q 004249          229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-FGVI----DLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLAL  303 (765)
Q Consensus       229 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  303 (765)
                      ++..+|.++...|++++|...+++++...+.... ....    ...+.++...|++++|...+++++...+.........
T Consensus       176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  255 (373)
T 1hz4_A          176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  255 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence            5667777777777777777777777665332111 1011    1233446667777777777766654421111111223


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHhhcccCC-----CChHHHHHHHHHHHHccccHHHHHHHHHHHHhc
Q 004249          304 KIKAGICHIQLGNTDKAEILLTAIHWENV-----SDHAESINEIADLFKNRELYSTALKYYHMLEAN  365 (765)
Q Consensus       304 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  365 (765)
                      +..++.++...|++++|...+++++....     .....++..+|.++...|++++|...+++++..
T Consensus       256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~  322 (373)
T 1hz4_A          256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  322 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            45566666666666666666666543210     011235555666666666666666666666654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.81  E-value=1.8e-19  Score=182.16  Aligned_cols=256  Identities=15%  Similarity=0.091  Sum_probs=164.9

Q ss_pred             hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 004249          121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACY--------KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA----  188 (765)
Q Consensus       121 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----  188 (765)
                      +|....++..+|.++...|++++|+.+|++++.+        .|....++..+|.++...|++++|+.++++++..    
T Consensus        23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  102 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT  102 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            3444577888888888888888888888888774        4555677777888888888888888888888776    


Q ss_pred             ----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004249          189 ----DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLC--------PENIEALKMGAKLYQKSGQIESSVDILEDYLKG  256 (765)
Q Consensus       189 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  256 (765)
                          .|....++..+|.++...|++++|+.+++++++..        |....++..+|.++...|++++|+.++++++..
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                24445677788888888888888888888887763        444566777777888888888888888777776


Q ss_pred             --------CCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhc
Q 004249          257 --------HPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIH  328 (765)
Q Consensus       257 --------~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  328 (765)
                              .|..  ..++..+|.++...|++++|+..+++++...+..    .            .+......       
T Consensus       183 ~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~------------~~~~~~~~-------  237 (311)
T 3nf1_A          183 YQTKLGPDDPNV--AKTKNNLASCYLKQGKFKQAETLYKEILTRAHER----E------------FGSVDDEN-------  237 (311)
T ss_dssp             HHHTSCTTCHHH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH----H------------HC-------------
T ss_pred             HHHHhCCCCHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh----c------------CCCCCcch-------
Confidence                    2222  2356677777777777777777777777762210    0            00000000       


Q ss_pred             ccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC
Q 004249          329 WENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED  404 (765)
Q Consensus       329 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  404 (765)
                       .........+...+..+...+.+.+|...+..+...  .|..+.++..+|.++...|++++|+.+|++++++.|.
T Consensus       238 -~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          238 -KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             -CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             -HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence             000001223333444455566667777777777766  7778888888999999999999999999999888765

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.81  E-value=9.2e-20  Score=184.31  Aligned_cols=255  Identities=13%  Similarity=0.109  Sum_probs=193.5

Q ss_pred             CCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc--
Q 004249           85 KKVCPEIRRMLGDASLHYALGRYEEAISVLHEVIRL--------EEELPNSYHILGLVHDALGNTAKAMGCYWLAACY--  154 (765)
Q Consensus        85 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--  154 (765)
                      ...+.....+...|..++..|++++|+..|++++..        .|....++..+|.++...|++++|+.++++++..  
T Consensus        21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  100 (311)
T 3nf1_A           21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE  100 (311)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            344566777888999999999999999999999985        5566789999999999999999999999999987  


Q ss_pred             ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004249          155 ------KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKAD--------PNDFKLKFHLASLYVELGNFQRAADVYRQMV  220 (765)
Q Consensus       155 ------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  220 (765)
                            .|....++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.++++++
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  180 (311)
T 3nf1_A          101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL  180 (311)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                  35556888999999999999999999999999873        4556789999999999999999999999999


Q ss_pred             Hh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          221 QL--------CPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       221 ~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                      ..        .|....++..+|.++...|++++|+..+++++...|...       .+.........             
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~-------------  240 (311)
T 3nf1_A          181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE-------FGSVDDENKPI-------------  240 (311)
T ss_dssp             HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-------HC------CCH-------------
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-------CCCCCcchHHH-------------
Confidence            98        666678899999999999999999999999998765410       00000000000             


Q ss_pred             hcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhc
Q 004249          293 YYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEAN  365 (765)
Q Consensus       293 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  365 (765)
                           ......+...+..+...+.+.++...+..+.... +..+.++..+|.++...|++++|+.+|++++.+
T Consensus       241 -----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          241 -----WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             -----HHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                 0011112223333455667777777777776544 677888999999999999999999999999877

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.80  E-value=3.7e-17  Score=169.84  Aligned_cols=305  Identities=12%  Similarity=0.043  Sum_probs=234.1

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--H----H
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS-----SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND--F----K  194 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~----~  194 (765)
                      .++..+|.++...|++++|+..+++++...|...     .++..+|.++...|++++|...+++++...|..  +    .
T Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   94 (373)
T 1hz4_A           15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   94 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            5677889999999999999999999998876543     257789999999999999999999999875432  2    3


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC---H
Q 004249          195 LKFHLASLYVELGNFQRAADVYRQMVQLC--------PENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD---F  263 (765)
Q Consensus       195 ~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~  263 (765)
                      ++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|...+++++...+....   .
T Consensus        95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  174 (373)
T 1hz4_A           95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  174 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence            47889999999999999999999999865        334567788999999999999999999999998775432   3


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCc-cHHHH--HHHHHHHHhcCChhHHHHHHHhhcccCCCC---hHH
Q 004249          264 GVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKEL-LLALK--IKAGICHIQLGNTDKAEILLTAIHWENVSD---HAE  337 (765)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~  337 (765)
                      ..+..+|.++...|++++|...+++++......... .....  ...+.++...|++++|...+.+++...+..   ...
T Consensus       175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  254 (373)
T 1hz4_A          175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  254 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence            367789999999999999999999999874432111 11111  134455789999999999999987644211   134


Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHhccCCC----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 004249          338 SINEIADLFKNRELYSTALKYYHMLEANAGVH----NDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLA  413 (765)
Q Consensus       338 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  413 (765)
                      .+..++.++...|++++|...+++++......    ....++..+|.++...|++++|...+++++...+..     ...
T Consensus       255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~-----g~~  329 (373)
T 1hz4_A          255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT-----GFI  329 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----CCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc-----cHH
Confidence            67789999999999999999999988762111    123578889999999999999999999999875431     122


Q ss_pred             HHHHHcCCHHHHHHhcCCCCCccc
Q 004249          414 SLLLEDAKDEEAISLLTPPMSLEN  437 (765)
Q Consensus       414 ~~~~~~g~~~~A~~~~~~~~~~~~  437 (765)
                      ..+...|  +....+++......|
T Consensus       330 ~~~~~~g--~~~~~ll~~~~~~~~  351 (373)
T 1hz4_A          330 SHFVIEG--EAMAQQLRQLIQLNT  351 (373)
T ss_dssp             HHHHTTH--HHHHHHHHHHHHTTC
T ss_pred             HHHHHcc--HHHHHHHHHHHhCCC
Confidence            2333333  444555555444444

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.79  E-value=4.8e-18  Score=156.95  Aligned_cols=171  Identities=16%  Similarity=0.189  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI  170 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  170 (765)
                      ...++..|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            44455666777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004249          171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDIL  250 (765)
Q Consensus       171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  250 (765)
                      ..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHhcCCCCC
Q 004249          251 EDYLKGHPTEA  261 (765)
Q Consensus       251 ~~~~~~~p~~~  261 (765)
                      +++++..|++.
T Consensus       168 ~~~~~~~~~~~  178 (186)
T 3as5_A          168 KKANELDEGAS  178 (186)
T ss_dssp             HHHHHHHHCCC
T ss_pred             HHHHHcCCCch
Confidence            77777666654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.79  E-value=2.5e-18  Score=161.71  Aligned_cols=169  Identities=14%  Similarity=0.128  Sum_probs=148.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHH----------------HHHHHHHcCCHHHHHHHHHHHhcc
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHI----------------LGLVHDALGNTAKAMGCYWLAACY  154 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~a~~~  154 (765)
                      +..++.+|..++..|++++|+..|++++..+|+++.+++.                +|.++...|++++|+..|++++++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999999999999                999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhCCCCHHHHHH
Q 004249          155 KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN--FQRAADVYRQMVQLCPENIEALKM  232 (765)
Q Consensus       155 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~  232 (765)
                      +|+++.++..+|.++...|++++|+.+|+++++++|+++.+++.+|.++...|+  ...+...+.+++...| ...+++.
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~  162 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYR  162 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHH
Confidence            999999999999999999999999999999999999999999999999987664  4566777777764332 2346778


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249          233 GAKLYQKSGQIESSVDILEDYLKGHPTE  260 (765)
Q Consensus       233 la~~~~~~g~~~~A~~~~~~~~~~~p~~  260 (765)
                      +|.++...|++++|+..|+++++.+|+.
T Consensus       163 ~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          163 DGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence            8999999999999999999999999974

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.79  E-value=1.7e-19  Score=159.41  Aligned_cols=145  Identities=13%  Similarity=0.118  Sum_probs=97.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 004249           98 ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTW  177 (765)
Q Consensus        98 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~  177 (765)
                      |.++...|++++|+..+++++..+|.++.+++.+|.+|+..|++++|+.+|+++++++|+++.+|..+|.++...|++++
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence            34455566667777777777666666666666777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004249          178 AMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADV-YRQMVQLCPENIEALKMGAKLYQKSGQ  242 (765)
Q Consensus       178 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~  242 (765)
                      |+.+|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus        84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            77777777777777777777777777777766655544 466777777777666666666666554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.78  E-value=1e-16  Score=157.12  Aligned_cols=233  Identities=9%  Similarity=0.003  Sum_probs=194.2

Q ss_pred             CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHh---CCHH
Q 004249          140 NTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG--DTTWAMSCLSEAVKADPNDFKLKFHLASLY----VEL---GNFQ  210 (765)
Q Consensus       140 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---g~~~  210 (765)
                      ..++|+..+.+++.++|++..+|...+.++...|  ++++++.++..++..+|++..+|...+.++    ...   ++++
T Consensus        48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence            3468999999999999999999999999999999  999999999999999999999999999999    666   7899


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcc------HHHH
Q 004249          211 RAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE--SSVDILEDYLKGHPTEADFGVIDLLASMLVQMNA------YDRV  282 (765)
Q Consensus       211 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~------~~~A  282 (765)
                      +++.++.++++.+|.+..+|...+.++...|.++  +++.++.++++.+|.+..  +|+..+.++...+.      ++++
T Consensus       128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s--AW~~R~~ll~~l~~~~~~~~~~eE  205 (306)
T 3dra_A          128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS--AWSHRFFLLFSKKHLATDNTIDEE  205 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHhccccchhhhHHHH
Confidence            9999999999999999999999999999999999  999999999999999876  89999999998887      8999


Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhH-HHHHHHhhcccC--CCChHHHHHHHHHHHHccccHHHHHHHH
Q 004249          283 LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDK-AEILLTAIHWEN--VSDHAESINEIADLFKNRELYSTALKYY  359 (765)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~  359 (765)
                      ++++.+++..    +|.+..+|..++.++...|.... ...+..+++...  .+.++.++..++.++.+.|+.++|+++|
T Consensus       206 l~~~~~aI~~----~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~  281 (306)
T 3dra_A          206 LNYVKDKIVK----CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY  281 (306)
T ss_dssp             HHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHh----CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            9999999998    78888888888888888877554 344555554321  2445566666666666666666666666


Q ss_pred             HHHHh-ccCCCCCHHHHHHHHH
Q 004249          360 HMLEA-NAGVHNDGCLHLKIAE  380 (765)
Q Consensus       360 ~~~~~-~~~~~~~~~~~~~la~  380 (765)
                      +.+.. .  +|.....|...+.
T Consensus       282 ~~l~~~~--Dpir~~yW~~~~~  301 (306)
T 3dra_A          282 DLLKSKY--NPIRSNFWDYQIS  301 (306)
T ss_dssp             HHHHHTT--CGGGHHHHHHHHH
T ss_pred             HHHHhcc--ChHHHHHHHHHHh
Confidence            66664 4  5666666655443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.78  E-value=3.1e-19  Score=157.72  Aligned_cols=147  Identities=18%  Similarity=0.140  Sum_probs=133.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCH
Q 004249          130 ILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNF  209 (765)
Q Consensus       130 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  209 (765)
                      .||.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+.+|+++++++|+++.++..+|.++...|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            47888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCCCHHHHHHHHHHHHHhcc
Q 004249          210 QRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDI-LEDYLKGHPTEADFGVIDLLASMLVQMNA  278 (765)
Q Consensus       210 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~~~l~~~~~~~~~  278 (765)
                      ++|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.  ++..++.++...|+
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~--~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPA--VYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH--HHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH--HHHHHHHHHHHhCc
Confidence            9999999999999999999999999999999999887765 5999999999876  67788888877764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.78  E-value=1.3e-18  Score=194.33  Aligned_cols=186  Identities=17%  Similarity=-0.011  Sum_probs=132.6

Q ss_pred             HHcCCHHHHHHHHHHHH--------HhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 004249          102 YALGRYEEAISVLHEVI--------RLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG  173 (765)
Q Consensus       102 ~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  173 (765)
                      +..|++++|+..+++++        ..+|++..+++.+|.++...|++++|+..|+++++.+|++..+|+.+|.++...|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            56777777777777777        6777777777777777777777777777777777777777777777777777777


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249          174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDY  253 (765)
Q Consensus       174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  253 (765)
                      ++++|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++.+|++..+++.+|.++...|++++|+..|+++
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  560 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEV  560 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            77777777777777777777777777777777777777 77777777777777777777777777777777777777777


Q ss_pred             HhcCCCCCCHHHHHHHHHHHHHhccHHHH-HHHHHHHH
Q 004249          254 LKGHPTEADFGVIDLLASMLVQMNAYDRV-LKHIELVD  290 (765)
Q Consensus       254 ~~~~p~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~  290 (765)
                      ++.+|++..  ++..+|.++...++.+++ ...++++.
T Consensus       561 l~l~P~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~A~  596 (681)
T 2pzi_A          561 PPTSRHFTT--ARLTSAVTLLSGRSTSEVTEEQIRDAA  596 (681)
T ss_dssp             CTTSTTHHH--HHHHHHHHTC-------CCHHHHHHHH
T ss_pred             cccCcccHH--HHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence            777777655  566777777665543333 33333333

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.78  E-value=7.6e-17  Score=167.58  Aligned_cols=238  Identities=11%  Similarity=-0.029  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCC---ccHH
Q 004249          230 LKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKE---LLLA  302 (765)
Q Consensus       230 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~  302 (765)
                      ++.+|..+...|++++|+..|++++...+....    ..++..+|.++...|++++|+..+++++..++....   ....
T Consensus       104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  183 (378)
T 3q15_A          104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ  183 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence            445555555666666666666665554322211    234555666666666666666666666655443211   2234


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHhhccc-----CCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhcc---CCCCCHHH
Q 004249          303 LKIKAGICHIQLGNTDKAEILLTAIHWE-----NVSDHAESINEIADLFKNRELYSTALKYYHMLEANA---GVHNDGCL  374 (765)
Q Consensus       303 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~  374 (765)
                      ++..+|.++...|++++|+..+++++..     ..+....++..+|.++...|++++|+.+|++++.+.   ..|..+.+
T Consensus       184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  263 (378)
T 3q15_A          184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV  263 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence            4556666666666666666666665432     112234577778888888888888888888887720   15666778


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHcCC---HHHHHHhcCCCCCccccccCcccch
Q 004249          375 HLKIAECSLALKEREKSIIYFYKALQILE-----DNIDARLTLASLLLEDAK---DEEAISLLTPPMSLENKYVNSDKTH  446 (765)
Q Consensus       375 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~  446 (765)
                      +..+|.++...|++++|+.+++++++..+     ........++.++...|+   +.+|+.++++.... +.        
T Consensus       264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~-~~--------  334 (378)
T 3q15_A          264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLH-AY--------  334 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCH-HH--------
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCCh-hH--------
Confidence            88888888888888888888888888743     233445557777777777   77888877763321 11        


Q ss_pred             hhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHh
Q 004249          447 AWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVC  480 (765)
Q Consensus       447 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  480 (765)
                          ...++..+|.+|...|++++|+..+.+++.
T Consensus       335 ----~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          335 ----IEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             ----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                135667888888888888888888887764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.77  E-value=1.7e-17  Score=165.21  Aligned_cols=249  Identities=11%  Similarity=0.003  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHHhhCCCchHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249          109 EAISVLHEVIRLEEELPNSYHILGLVHDAL---GNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEA  185 (765)
Q Consensus       109 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  185 (765)
                      +|.+++.++-+.-+.....+     .++..   +++++|+..|.++              |.++...|++++|+.+|.++
T Consensus         3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a   63 (292)
T 1qqe_A            3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA   63 (292)
T ss_dssp             CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence            45566666666655433222     11222   1477777777776              45677778888888888888


Q ss_pred             HhcCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 004249          186 VKADPN------DFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN------IEALKMGAKLYQKS-GQIESSVDILED  252 (765)
Q Consensus       186 l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~  252 (765)
                      +.+.+.      ...++..+|.+|...|++++|+.+|++++.+.|..      ..++..+|.+|... |++++|+.+|++
T Consensus        64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~  143 (292)
T 1qqe_A           64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL  143 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            776321      14567788888888888888888888888776543      35677888888885 888888888888


Q ss_pred             HHhcCCCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCc---cHHHHHHHHHHHHhcCChhHHHHHHH
Q 004249          253 YLKGHPTEAD----FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKEL---LLALKIKAGICHIQLGNTDKAEILLT  325 (765)
Q Consensus       253 ~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~  325 (765)
                      +++..|....    ..++..+|.++..+|++++|+..|++++...+.....   ....+..+|.++...|++++|+..|+
T Consensus       144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  223 (292)
T 1qqe_A          144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ  223 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            8887765432    2356677888888888888888888888773322111   12256677777777777777777777


Q ss_pred             hhcccCCCChHH-----HHHHHHHHHH--ccccHHHHHHHHHHHHhccCCCCCHHHHHHHH
Q 004249          326 AIHWENVSDHAE-----SINEIADLFK--NRELYSTALKYYHMLEANAGVHNDGCLHLKIA  379 (765)
Q Consensus       326 ~~~~~~~~~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la  379 (765)
                      +++... |....     .+..++..+.  ..+++++|+..|++++.+  +|....++..+-
T Consensus       224 ~al~l~-p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l--~~~~~~~~~~~k  281 (292)
T 1qqe_A          224 EGQSED-PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL--DKWKITILNKIK  281 (292)
T ss_dssp             GGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC--CHHHHHHHHHHH
T ss_pred             HHHhhC-CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc--HHHHHHHHHHHH
Confidence            776554 33222     2334444443  456677777777766666  555544444333

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.77  E-value=2.6e-17  Score=157.04  Aligned_cols=184  Identities=14%  Similarity=0.033  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH---HHHHH
Q 004249           92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSS---LWKLI  165 (765)
Q Consensus        92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~~~l  165 (765)
                      ..++..|..++..|+|++|+..|++++...|.++   .+++.+|.++...|++++|+..|+++++.+|+++.   +++.+
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~   84 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR   84 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence            4567888999999999999999999999999875   68999999999999999999999999999998864   78889


Q ss_pred             HHHHHH------------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 004249          166 FPWLIE------------------QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI  227 (765)
Q Consensus       166 a~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  227 (765)
                      |.++..                  .|++++|+..|+++++..|+++.+...+..+....+.                 ..
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~-----------------~~  147 (225)
T 2yhc_A           85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR-----------------LA  147 (225)
T ss_dssp             HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-----------------HH
T ss_pred             HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-----------------HH
Confidence            998876                  4567777777777777777665443211110000000                 00


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          228 EALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-FGVIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       228 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                      .....+|.+|...|++++|+..|+++++..|+++. ..++..+|.++..+|++++|+..++++...
T Consensus       148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence            11234556666666666666666666666665432 124556666666666666666666655554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.77  E-value=1.2e-17  Score=166.35  Aligned_cols=224  Identities=12%  Similarity=0.058  Sum_probs=152.6

Q ss_pred             CHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------CHHHHHHHHHHHHHcCCHHHHH
Q 004249          106 RYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK------DSSLWKLIFPWLIEQGDTTWAM  179 (765)
Q Consensus       106 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~g~~~~A~  179 (765)
                      ++++|+..|.++              |.++...|++++|+.+|.+++.+.+.      ...++..+|.+|...|++++|+
T Consensus        32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~   97 (292)
T 1qqe_A           32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV   97 (292)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            477777777765              55677778888888888887776421      1456777888888888888888


Q ss_pred             HHHHHHHhcCCCC------HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHH
Q 004249          180 SCLSEAVKADPND------FKLKFHLASLYVEL-GNFQRAADVYRQMVQLCPEN------IEALKMGAKLYQKSGQIESS  246 (765)
Q Consensus       180 ~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A  246 (765)
                      .+|++++.+.|..      ..++..+|.+|... |++++|+.+|++++++.|..      ..++..+|.++...|++++|
T Consensus        98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  177 (292)
T 1qqe_A           98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA  177 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence            8888888775532      35677888888885 88888888888888877644      45677888888888888888


Q ss_pred             HHHHHHHHhcCCCCCCH-----HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCC-ccHHHHHHHHHHHH--hcCChh
Q 004249          247 VDILEDYLKGHPTEADF-----GVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKE-LLLALKIKAGICHI--QLGNTD  318 (765)
Q Consensus       247 ~~~~~~~~~~~p~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~--~~~~~~  318 (765)
                      +..|++++...|++...     ..+..+|.++...|++++|+..|++++.+.+.... ........++..+.  ..++++
T Consensus       178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~  257 (292)
T 1qqe_A          178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS  257 (292)
T ss_dssp             HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred             HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence            88888888887776542     14567888888888888888888888776322111 01112333444443  456788


Q ss_pred             HHHHHHHhhcccCCCChHHHHHHHHH
Q 004249          319 KAEILLTAIHWENVSDHAESINEIAD  344 (765)
Q Consensus       319 ~A~~~~~~~~~~~~~~~~~~~~~la~  344 (765)
                      +|+..|++++..+ |....++..+-.
T Consensus       258 ~A~~~~~~~~~l~-~~~~~~~~~~k~  282 (292)
T 1qqe_A          258 EHCKEFDNFMRLD-KWKITILNKIKE  282 (292)
T ss_dssp             HHHHHHTTSSCCC-HHHHHHHHHHHH
T ss_pred             HHHHHhccCCccH-HHHHHHHHHHHH
Confidence            8888888876554 444444444433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.77  E-value=4.6e-17  Score=150.24  Aligned_cols=168  Identities=16%  Similarity=0.153  Sum_probs=160.4

Q ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249          125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV  204 (765)
Q Consensus       125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  204 (765)
                      ...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHH
Q 004249          205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLK  284 (765)
Q Consensus       205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~  284 (765)
                      ..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..  ++..+|.++...|++++|+.
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK--VHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchH--HHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998755  78899999999999999999


Q ss_pred             HHHHHHHHhc
Q 004249          285 HIELVDLVYY  294 (765)
Q Consensus       285 ~~~~~~~~~~  294 (765)
                      .+++++...+
T Consensus       166 ~~~~~~~~~~  175 (186)
T 3as5_A          166 HFKKANELDE  175 (186)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHcCC
Confidence            9999998844

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.76  E-value=4.9e-17  Score=181.50  Aligned_cols=188  Identities=12%  Similarity=0.024  Sum_probs=147.5

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 004249          153 CYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAV--------KADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCP  224 (765)
Q Consensus       153 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  224 (765)
                      ..+|+++.+++..+   ...|++++|+..+++++        ..+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  464 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG  464 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence            44677776666655   67788888888888888        77788888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHH
Q 004249          225 ENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALK  304 (765)
Q Consensus       225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  304 (765)
                      ++..+++.+|.++...|++++|+..|+++++.+|++..  ++..+|.++...|++++ +..|+++++.    +|....++
T Consensus       465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~--~~~~lg~~~~~~g~~~~-~~~~~~al~~----~P~~~~a~  537 (681)
T 2pzi_A          465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA--PKLALAATAELAGNTDE-HKFYQTVWST----NDGVISAA  537 (681)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH--HHHHHHHHHHHHTCCCT-TCHHHHHHHH----CTTCHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHcCChHH-HHHHHHHHHh----CCchHHHH
Confidence            88888888888888888888888888888888888766  67788888888888888 8888888888    67777788


Q ss_pred             HHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHcccc
Q 004249          305 IKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNREL  351 (765)
Q Consensus       305 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  351 (765)
                      +.+|.++...|++++|+..|++++... |.+..++..+|.++...++
T Consensus       538 ~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          538 FGLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence            888888888888888888888887666 7778888888888766444

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.76  E-value=9.1e-18  Score=157.83  Aligned_cols=166  Identities=11%  Similarity=0.043  Sum_probs=127.5

Q ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHh
Q 004249          124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKL----------------IFPWLIEQGDTTWAMSCLSEAVK  187 (765)
Q Consensus       124 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~  187 (765)
                      +++.++..|..+...|++++|+..|++++..+|+++.+++.                +|.++...|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45677888999999999999999999999999999988888                88888888888888888888888


Q ss_pred             cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCCCHHH
Q 004249          188 ADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ--IESSVDILEDYLKGHPTEADFGV  265 (765)
Q Consensus       188 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~  265 (765)
                      .+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.+|...|+  ...+...+.+++...|.   ...
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~a  159 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM---QYA  159 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH---HHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch---hHH
Confidence            8888888888888888888888888888888888888888888888888766554  34455666665432221   124


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          266 IDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       266 ~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                      ++.+|.++...|++++|+..|+++++.
T Consensus       160 ~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          160 RYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            566777777778888888888888777

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.75  E-value=1.9e-17  Score=151.19  Aligned_cols=162  Identities=17%  Similarity=0.113  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH-H
Q 004249           93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI-E  171 (765)
Q Consensus        93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~-~  171 (765)
                      ..+..|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+| ++..+..++.+.. .
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ   86 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence            3456666666677777777777777666777667777777777777777777777776666666 5555444443322 2


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 004249          172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN--IEALKMGAKLYQKSGQIESSVDI  249 (765)
Q Consensus       172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~  249 (765)
                      .+...+|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+.  +.++..++.++...|+.++|+..
T Consensus        87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~  166 (176)
T 2r5s_A           87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK  166 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence            2233345666666666666666666666666666666666666666666666654  34666666666666666666666


Q ss_pred             HHHHHh
Q 004249          250 LEDYLK  255 (765)
Q Consensus       250 ~~~~~~  255 (765)
                      |++++.
T Consensus       167 y~~al~  172 (176)
T 2r5s_A          167 YRRQLY  172 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.74  E-value=2.4e-17  Score=150.53  Aligned_cols=171  Identities=15%  Similarity=0.033  Sum_probs=152.1

Q ss_pred             hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004249          121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLA  200 (765)
Q Consensus       121 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  200 (765)
                      +|...+.++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...| ++..+..++
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~   80 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA   80 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence            4556678899999999999999999999999999999999999999999999999999999999999999 887776666


Q ss_pred             HHHH-HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccH
Q 004249          201 SLYV-ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAY  279 (765)
Q Consensus       201 ~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~  279 (765)
                      .+.. ..+....|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+.....++..++.++...|+.
T Consensus        81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  160 (176)
T 2r5s_A           81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG  160 (176)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred             HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence            5533 333445689999999999999999999999999999999999999999999999875545788999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 004249          280 DRVLKHIELVDLV  292 (765)
Q Consensus       280 ~~A~~~~~~~~~~  292 (765)
                      ++|+..|++++..
T Consensus       161 ~~A~~~y~~al~~  173 (176)
T 2r5s_A          161 NAIASKYRRQLYS  173 (176)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHH
Confidence            9999999998865

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.74  E-value=1.6e-15  Score=149.07  Aligned_cols=195  Identities=8%  Similarity=0.044  Sum_probs=166.6

Q ss_pred             HHHHHHHHcCCHH-HHHHHHHHHHHhhCCCchHHHHHHHHHHHcCC----------HHHHHHHHHHHhccCCCCHHHHHH
Q 004249           96 GDASLHYALGRYE-EAISVLHEVIRLEEELPNSYHILGLVHDALGN----------TAKAMGCYWLAACYKQKDSSLWKL  164 (765)
Q Consensus        96 ~~a~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~a~~~~p~~~~~~~~  164 (765)
                      .........|.++ +|+..+.+++..+|++..+|...+.++...|.          +++++.++..++..+|.+..+|..
T Consensus        34 ~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~h  113 (331)
T 3dss_A           34 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHH  113 (331)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            3344455677777 79999999999999999999999999988776          689999999999999999999999


Q ss_pred             HHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-
Q 004249          165 IFPWLIEQGD--TTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN-FQRAADVYRQMVQLCPENIEALKMGAKLYQKS-  240 (765)
Q Consensus       165 la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-  240 (765)
                      .+.++...|+  +++++.++.++++.+|.+..+|...+.+....|. +++++.++.++++.+|.+..+|..++.++... 
T Consensus       114 R~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~  193 (331)
T 3dss_A          114 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  193 (331)
T ss_dssp             HHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHS
T ss_pred             HHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhh
Confidence            9999999984  8999999999999999999999999999999998 69999999999999999999999999998887 


Q ss_pred             -------------CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHH
Q 004249          241 -------------GQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM-----------NAYDRVLKHIELVDLV  292 (765)
Q Consensus       241 -------------g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~  292 (765)
                                   +.++++++++.+++..+|++..  +|+.+..++...           +.++++++.++++++.
T Consensus       194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~S--aW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~  267 (331)
T 3dss_A          194 PQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS--AWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL  267 (331)
T ss_dssp             CCC------CCCHHHHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccccccccchHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence                         4578899999999999998877  666555555444           4566666666666666

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.73  E-value=1.7e-17  Score=164.89  Aligned_cols=229  Identities=13%  Similarity=0.087  Sum_probs=160.3

Q ss_pred             HHcCCHHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------CCCHHHHHHH
Q 004249          102 YALGRYEEAISVLHEVIRLE--------EELPNSYHILGLVHDALGNTAKAMGCYWLAACYK--------QKDSSLWKLI  165 (765)
Q Consensus       102 ~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~l  165 (765)
                      ...|++++|+..|++++...        |..+.++..+|.++...|++++|+.+|++++...        |....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            35677778888888777642        4556788999999999999999999999998763        4556788889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHH
Q 004249          166 FPWLIEQGDTTWAMSCLSEAVKA--------DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL--------CPENIEA  229 (765)
Q Consensus       166 a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~  229 (765)
                      |.++...|++++|+.++++++..        +|....++..+|.++...|++++|+.++++++..        .|....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999999887        3556678888999999999999999999998887        5666778


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC---------CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCcc
Q 004249          230 LKMGAKLYQKSGQIESSVDILEDYLKGH---------PTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELL  300 (765)
Q Consensus       230 ~~~la~~~~~~g~~~~A~~~~~~~~~~~---------p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  300 (765)
                      +..+|.++...|++++|+.++++++...         +....  .+..++..+...+....+.                 
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----------------  232 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKP--IWMHAEEREESKDKRRDSA-----------------  232 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCC--HHHHHHHHHHTTCCCCC-------------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHH--HHHHHHHHHhcCCchhHHH-----------------
Confidence            8888888888888888888888888752         22222  3334444433332222111                 


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhc
Q 004249          301 LALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEAN  365 (765)
Q Consensus       301 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  365 (765)
                                     .+..+...+..+.... +....++..+|.++...|++++|+.+|+++++.
T Consensus       233 ---------------~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          233 ---------------PYGEYGSWYKACKVDS-PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             -------------------------CCCCCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             ---------------HHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                           1223333333333222 556667777777777777777777777777654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.73  E-value=3.1e-17  Score=139.61  Aligned_cols=117  Identities=19%  Similarity=0.141  Sum_probs=66.8

Q ss_pred             hhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004249          120 LEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHL  199 (765)
Q Consensus       120 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  199 (765)
                      ++|+.+.++..+|..++..|++++|+..|+++++++|.++.+|..+|.++..+|++++|+..|+++++++|+++.+++.+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004249          200 ASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKL  236 (765)
Q Consensus       200 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  236 (765)
                      |.++..+|++++|+..|+++++++|++..++..++.+
T Consensus        88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            5555555555555555555555555555555555443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.72  E-value=4.9e-17  Score=161.56  Aligned_cols=233  Identities=14%  Similarity=0.047  Sum_probs=171.9

Q ss_pred             HHcCCHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHH
Q 004249          136 DALGNTAKAMGCYWLAACY--------KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA--------DPNDFKLKFHL  199 (765)
Q Consensus       136 ~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l  199 (765)
                      ...|++++|+.+|+++++.        .|....++..+|.++...|++++|+.++++++..        .|....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3467778888888877763        2556788999999999999999999999999977        35556789999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCCCH
Q 004249          200 ASLYVELGNFQRAADVYRQMVQL--------CPENIEALKMGAKLYQKSGQIESSVDILEDYLKG--------HPTEADF  263 (765)
Q Consensus       200 a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~  263 (765)
                      |.++...|++++|+..|++++..        .|....++..+|.++...|++++|+.++++++..        .|..  .
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~  169 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV--A  169 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH--H
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH--H
Confidence            99999999999999999999987        4666788999999999999999999999999987        3322  3


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-----CCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHH
Q 004249          264 GVIDLLASMLVQMNAYDRVLKHIELVDLVYYS-----GKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAES  338 (765)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  338 (765)
                      .++..+|.++...|++++|+..+++++...+.     ..+.....+..++......+...                    
T Consensus       170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  229 (283)
T 3edt_B          170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR--------------------  229 (283)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCC--------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchh--------------------
Confidence            36789999999999999999999999887321     11222222333333222221111                    


Q ss_pred             HHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          339 INEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQI  401 (765)
Q Consensus       339 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  401 (765)
                               ....+..+...++.....  .|..+.++..+|.++...|++++|+.+|+++++.
T Consensus       230 ---------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          230 ---------DSAPYGEYGSWYKACKVD--SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             ---------C------------CCCCC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             ---------HHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                     122344455555444434  5777889999999999999999999999999875

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.72  E-value=1.4e-15  Score=149.99  Aligned_cols=194  Identities=12%  Similarity=0.095  Sum_probs=174.0

Q ss_pred             CCCCcHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhCCCchHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCHHH
Q 004249           84 KKKVCPEIRRMLGDASLHYALGRY-EEAISVLHEVIRLEEELPNSYHILGLVHDALG-NTAKAMGCYWLAACYKQKDSSL  161 (765)
Q Consensus        84 ~~~~~~~~~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~  161 (765)
                      ....+++....+..-...+..+.+ ++|+.++.+++..+|++..+|...+.++...| .+++++.++..++..+|++..+
T Consensus        46 ~i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~a  125 (349)
T 3q7a_A           46 PIMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQV  125 (349)
T ss_dssp             CBCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHH
T ss_pred             eeeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH
Confidence            445567777777665556665555 68999999999999999999999999999999 5999999999999999999999


Q ss_pred             HHHHHHHHHHc-C-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHhCCCCHHHHH
Q 004249          162 WKLIFPWLIEQ-G-DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQ--------RAADVYRQMVQLCPENIEALK  231 (765)
Q Consensus       162 ~~~la~~~~~~-g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~  231 (765)
                      |...+.++... + ++++++.++.+++..+|.+..+|...+.+....|.++        ++++++.++++.+|.+..+|.
T Consensus       126 W~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~  205 (349)
T 3q7a_A          126 WHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWG  205 (349)
T ss_dssp             HHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            99999999988 8 8999999999999999999999999999999988887        999999999999999999999


Q ss_pred             HHHHHHHHcCC-------HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccH
Q 004249          232 MGAKLYQKSGQ-------IESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAY  279 (765)
Q Consensus       232 ~la~~~~~~g~-------~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~  279 (765)
                      ..+.++...+.       ++++++++.+++..+|++..  +|+.+..++...|+.
T Consensus       206 ~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S--aW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          206 WRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS--AWNYLRGFLKHFSLP  258 (349)
T ss_dssp             HHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHhcCCC
Confidence            99999999887       78999999999999999877  787877777776653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.72  E-value=2.1e-16  Score=150.70  Aligned_cols=191  Identities=11%  Similarity=0.015  Sum_probs=143.7

Q ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHH
Q 004249          124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS---SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFK---LKF  197 (765)
Q Consensus       124 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~  197 (765)
                      ++..++.+|..++..|++++|+..|++++...|.++   .+++.+|.++...|++++|+..|+++++.+|+++.   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            457788999999999999999999999999888764   78899999999999999999999999999998764   788


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHH-------------
Q 004249          198 HLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFG-------------  264 (765)
Q Consensus       198 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-------------  264 (765)
                      .+|.++...|..                ....+..++..+...|++++|+..|+++++.+|++....             
T Consensus        83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~  146 (225)
T 2yhc_A           83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL  146 (225)
T ss_dssp             HHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence            889888775421                111123344444455556666666666666666555421             


Q ss_pred             --HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccC
Q 004249          265 --VIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWEN  331 (765)
Q Consensus       265 --~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  331 (765)
                        ....+|.++...|++++|+..|+++++.+|. .+....++..+|.++..+|++++|+..++.+....
T Consensus       147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence              1257899999999999999999999999432 33345789999999999999999999999887655

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.71  E-value=2.7e-16  Score=155.88  Aligned_cols=171  Identities=13%  Similarity=0.012  Sum_probs=117.6

Q ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004249          122 EELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLAS  201 (765)
Q Consensus       122 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  201 (765)
                      |.+...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+........+.
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            55666666777777777777777777777777777777777777777777777777777777777766655555555555


Q ss_pred             HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHH
Q 004249          202 LYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDR  281 (765)
Q Consensus       202 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~  281 (765)
                      .+...++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++....++..++.++...|+.++
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  273 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA  273 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence            56666666667777777777777777777777777777777777777777777777766433356677777777777777


Q ss_pred             HHHHHHHHHHH
Q 004249          282 VLKHIELVDLV  292 (765)
Q Consensus       282 A~~~~~~~~~~  292 (765)
                      |+..|++++..
T Consensus       274 a~~~~r~al~~  284 (287)
T 3qou_A          274 LASXYRRQLYA  284 (287)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777766654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.70  E-value=3.4e-16  Score=155.16  Aligned_cols=167  Identities=15%  Similarity=0.059  Sum_probs=155.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 004249           89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPW  168 (765)
Q Consensus        89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~  168 (765)
                      .....++..|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+....+...+..
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~  194 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE  194 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence            34456678899999999999999999999999999999999999999999999999999999999999777777777777


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHH
Q 004249          169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN--IEALKMGAKLYQKSGQIESS  246 (765)
Q Consensus       169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A  246 (765)
                      +...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++  ..++..++.++...|+.++|
T Consensus       195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a  274 (287)
T 3qou_A          195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL  274 (287)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred             HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence            8899999999999999999999999999999999999999999999999999999998  88999999999999999999


Q ss_pred             HHHHHHHHh
Q 004249          247 VDILEDYLK  255 (765)
Q Consensus       247 ~~~~~~~~~  255 (765)
                      +..|++++.
T Consensus       275 ~~~~r~al~  283 (287)
T 3qou_A          275 ASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.70  E-value=1.6e-16  Score=135.21  Aligned_cols=121  Identities=22%  Similarity=0.148  Sum_probs=110.2

Q ss_pred             HHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 004249          150 LAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA  229 (765)
Q Consensus       150 ~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  229 (765)
                      ++..++|+...++..+|..++..|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|+++.+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            45568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 004249          230 LKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASM  272 (765)
Q Consensus       230 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~  272 (765)
                      ++.+|.++..+|++++|+..|+++++++|++..  ++..++.+
T Consensus        84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~--a~~~l~~~  124 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEE--AREGVRNC  124 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHH--HHHHHHHh
Confidence            999999999999999999999999999999876  56666654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.69  E-value=7.1e-16  Score=169.60  Aligned_cols=165  Identities=13%  Similarity=0.057  Sum_probs=141.1

Q ss_pred             cCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004249          104 LGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLS  183 (765)
Q Consensus       104 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  183 (765)
                      .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCC
Q 004249          184 EAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS---GQIESSVDILEDYLKGHPTE  260 (765)
Q Consensus       184 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~p~~  260 (765)
                      ++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...   |++++|+..++++++.+|.+
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            999999999999999999999999999999999999999999999999999999999   99999999999999999998


Q ss_pred             CCHHHHHHHH
Q 004249          261 ADFGVIDLLA  270 (765)
Q Consensus       261 ~~~~~~~~l~  270 (765)
                      ..  .+..++
T Consensus       162 ~~--~~~~l~  169 (568)
T 2vsy_A          162 VE--PFAFLS  169 (568)
T ss_dssp             SC--HHHHTT
T ss_pred             cC--hHHHhC
Confidence            87  444554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.68  E-value=3e-14  Score=140.11  Aligned_cols=247  Identities=11%  Similarity=0.055  Sum_probs=199.5

Q ss_pred             HcCCHH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249          137 ALGNTA-KAMGCYWLAACYKQKDSSLWKLIFPWLIEQGD----------TTWAMSCLSEAVKADPNDFKLKFHLASLYVE  205 (765)
Q Consensus       137 ~~g~~~-~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  205 (765)
                      ..|.++ +|+..+.+++.++|++..+|...+.++...+.          +++++.++..++..+|.+..+|...+.++..
T Consensus        41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~  120 (331)
T 3dss_A           41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  120 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence            456665 79999999999999999999999999888776          6899999999999999999999999999999


Q ss_pred             hC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh------
Q 004249          206 LG--NFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ-IESSVDILEDYLKGHPTEADFGVIDLLASMLVQM------  276 (765)
Q Consensus       206 ~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~------  276 (765)
                      .|  .+++++.++.++++.+|.+..+|...+.+....|. +++++.++.++++.+|.+..  +|+.++.++...      
T Consensus       121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S--AW~~R~~ll~~l~~~~~~  198 (331)
T 3dss_A          121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS--SWHYRSCLLPQLHPQPDS  198 (331)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH--HHHHHHHHHHHHSCCC--
T ss_pred             cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHhhhcccc
Confidence            99  49999999999999999999999999999999999 59999999999999999877  888999988877      


Q ss_pred             --------ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc-CChhHHHHHHHhhcccCCCChHHHHHHHHHHHH
Q 004249          277 --------NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQL-GNTDKAEILLTAIHWENVSDHAESINEIADLFK  347 (765)
Q Consensus       277 --------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~  347 (765)
                              +.++++++++.+++..    .|.+..+|+.+..++... |.             .. ..           -.
T Consensus       199 ~~~~~~~~~~~~eEle~~~~ai~~----~P~d~SaW~Y~r~ll~~~~~~-------------~~-~~-----------~~  249 (331)
T 3dss_A          199 GPQGRLPENVLLKELELVQNAFFT----DPNDQSAWFYHRWLLGAGSGR-------------CE-LS-----------VE  249 (331)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHSSSCG-------------GG-CC-----------HH
T ss_pred             ccccccchHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhccCc-------------cc-cc-----------hH
Confidence                    5678888888888888    677777775444333322 20             00 00           01


Q ss_pred             ccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004249          348 NRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSL---ALKEREKSIIYFYKALQILEDNIDARLTLASLL  416 (765)
Q Consensus       348 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  416 (765)
                      ..+.++++++.++++++.  .|++.-.+..++.+..   ..|..++...++.+++++||....-|..+...+
T Consensus       250 ~~~~l~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~  319 (331)
T 3dss_A          250 KSTVLQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  319 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence            135678999999999998  8888555444443332   246688999999999999998877666665544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.68  E-value=7.5e-17  Score=141.13  Aligned_cols=114  Identities=11%  Similarity=0.119  Sum_probs=70.1

Q ss_pred             HHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249          113 VLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND  192 (765)
Q Consensus       113 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  192 (765)
                      .+++++..+|+++.+++.+|.++...|++++|+..|++++.++|.++.+|..+|.++...|++++|+.+|++++.++|++
T Consensus        24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~  103 (151)
T 3gyz_A           24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND  103 (151)
T ss_dssp             CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred             CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence            34455555566666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 004249          193 FKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN  226 (765)
Q Consensus       193 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  226 (765)
                      +.+++.+|.++...|++++|+..|++++++.|+.
T Consensus       104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence            6666666666666666666666666666666554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.67  E-value=1.4e-16  Score=139.35  Aligned_cols=118  Identities=13%  Similarity=-0.004  Sum_probs=107.6

Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 004249          144 AMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLC  223 (765)
Q Consensus       144 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  223 (765)
                      +-..+++++.++|+++.+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|+++++++
T Consensus        21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~  100 (151)
T 3gyz_A           21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG  100 (151)
T ss_dssp             TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            33556778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 004249          224 PENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA  261 (765)
Q Consensus       224 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  261 (765)
                      |+++.+++.+|.+|...|++++|+..|+++++..|+..
T Consensus       101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999988753

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.67  E-value=1.5e-14  Score=142.65  Aligned_cols=179  Identities=9%  Similarity=0.015  Sum_probs=161.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-C-CH
Q 004249          133 LVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG-DTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL-G-NF  209 (765)
Q Consensus       133 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~  209 (765)
                      .+....+..++|+..+.+++.++|++..+|...+.++...| .+++++.++++++..+|++..+|...+.++... + ++
T Consensus        62 ~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~  141 (349)
T 3q7a_A           62 AIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP  141 (349)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh
Confidence            33344456678999999999999999999999999999999 599999999999999999999999999999998 8 89


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcc---
Q 004249          210 QRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE--------SSVDILEDYLKGHPTEADFGVIDLLASMLVQMNA---  278 (765)
Q Consensus       210 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~---  278 (765)
                      ++++.++.++++.+|.+..+|...+.+....|.++        +++++++++++.+|.+..  +|+..+.++...+.   
T Consensus       142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~S--AW~~R~~lL~~l~~~~~  219 (349)
T 3q7a_A          142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNS--AWGWRWYLRVSRPGAET  219 (349)
T ss_dssp             HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHTTSTTCCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHhcccccc
Confidence            99999999999999999999999999999998888        999999999999999876  89999999988886   


Q ss_pred             ----HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCh
Q 004249          279 ----YDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNT  317 (765)
Q Consensus       279 ----~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  317 (765)
                          ++++++++.+++..    .|.+..++..+..++...|..
T Consensus       220 ~~~~~~eELe~~~~aI~~----~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          220 SSRSLQDELIYILKSIHL----IPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCC
T ss_pred             chHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCCC
Confidence                78999999999999    788888888877777766654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.65  E-value=5.6e-16  Score=147.61  Aligned_cols=212  Identities=9%  Similarity=-0.030  Sum_probs=172.7

Q ss_pred             cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHH-------HHHHHHcCCHHHHHHHHHHHhccCCCCH-
Q 004249           88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHIL-------GLVHDALGNTAKAMGCYWLAACYKQKDS-  159 (765)
Q Consensus        88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~a~~~~p~~~-  159 (765)
                      .+....+|..|.-+ ..+++..|...|.+++..+|..+++|..+       +.++...++..+++..+++.+.+.|... 
T Consensus         4 ~~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~   82 (282)
T 4f3v_A            4 TDRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLN   82 (282)
T ss_dssp             HHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGC
T ss_pred             hHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhh
Confidence            34567778888776 68999999999999999999999999999       8999999999999999999998766533 


Q ss_pred             --------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004249          160 --------------------SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQM  219 (765)
Q Consensus       160 --------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  219 (765)
                                          .+...++.++...|++++|...|..++...|.+. +.+.+|.++.+.+++++|+..|+.+
T Consensus        83 a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a  161 (282)
T 4f3v_A           83 ARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSA  161 (282)
T ss_dssp             CEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTG
T ss_pred             hhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHh
Confidence                                3445588889999999999999999988888888 8899999999999999999999877


Q ss_pred             HHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Q 004249          220 VQLCPEN--IEALKMGAKLYQKSGQIESSVDILEDYLKGH--PTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYS  295 (765)
Q Consensus       220 l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  295 (765)
                      ....+..  ..+++.+|.++..+|++++|+..|++++...  |.. ...+++.+|.++..+|+.++|...|++++..   
T Consensus       162 ~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~-~~da~~~~glaL~~lGr~deA~~~l~~a~a~---  237 (282)
T 4f3v_A          162 GKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC-ARAIAWYLAMARRSQGNESAAVALLEWLQTT---  237 (282)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred             hccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence            6643221  3578899999999999999999999988543  221 2236778999999999999999999999988   


Q ss_pred             CCCccHHHHHHH
Q 004249          296 GKELLLALKIKA  307 (765)
Q Consensus       296 ~~~~~~~~~~~l  307 (765)
                       .|. ..+...+
T Consensus       238 -~P~-~~~~~aL  247 (282)
T 4f3v_A          238 -HPE-PKVAAAL  247 (282)
T ss_dssp             -SCC-HHHHHHH
T ss_pred             -CCc-HHHHHHH
Confidence             555 4444433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.62  E-value=2.6e-14  Score=134.43  Aligned_cols=175  Identities=14%  Similarity=0.041  Sum_probs=152.3

Q ss_pred             HHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 004249          108 EEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG----DTTWAMSCLS  183 (765)
Q Consensus       108 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~  183 (765)
                      .+|+..|+++.+.  .++.+++.+|.+|...+++++|+.+|+++++.  .++.+++.+|.+|.. +    ++++|+.+|+
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            3577888888765  78999999999999999999999999999875  688999999999988 7    8999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 004249          184 EAVKADPNDFKLKFHLASLYVE----LGNFQRAADVYRQMVQLCPE--NIEALKMGAKLYQK----SGQIESSVDILEDY  253 (765)
Q Consensus       184 ~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~----~g~~~~A~~~~~~~  253 (765)
                      ++.+  +.++.+++.+|.+|..    .+++++|+.+|+++.+..|.  ++.+++.+|.+|..    .+++++|+.+|+++
T Consensus        78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  155 (212)
T 3rjv_A           78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS  155 (212)
T ss_dssp             HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred             HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            9965  6789999999999987    88999999999999988873  48899999999999    88999999999999


Q ss_pred             HhcCCCCCCHHHHHHHHHHHHHh-c-----cHHHHHHHHHHHHHH
Q 004249          254 LKGHPTEADFGVIDLLASMLVQM-N-----AYDRVLKHIELVDLV  292 (765)
Q Consensus       254 ~~~~p~~~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~  292 (765)
                      ++. |.++.  +++.+|.+|... |     ++++|+.+|+++.+.
T Consensus       156 ~~~-~~~~~--a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          156 SSL-SRTGY--AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             HHT-SCTTH--HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHc-CCCHH--HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            988 55554  678999998765 3     899999999999887

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.62  E-value=2.8e-15  Score=131.67  Aligned_cols=117  Identities=10%  Similarity=-0.012  Sum_probs=80.6

Q ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 004249          146 GCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE  225 (765)
Q Consensus       146 ~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  225 (765)
                      ..|++++.++|++..+++.+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++.++|+
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            34566666666666666667777777777777777777777667766767777777777777777777777777777777


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249          226 NIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD  262 (765)
Q Consensus       226 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  262 (765)
                      ++.+++.+|.++...|++++|+..|+++++..|+++.
T Consensus        88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  124 (148)
T 2vgx_A           88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE  124 (148)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence            6666777777777777777777777777766666554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.62  E-value=7.5e-16  Score=135.34  Aligned_cols=120  Identities=13%  Similarity=0.092  Sum_probs=108.5

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 004249          111 ISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADP  190 (765)
Q Consensus       111 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  190 (765)
                      -..|++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.+|++++.++|
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            34577888888988999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 004249          191 NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEAL  230 (765)
Q Consensus       191 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  230 (765)
                      +++.+++.+|.++...|++++|+..|++++++.|+++...
T Consensus        87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  126 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX  126 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence            9999999999999999999999999999999988876543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.62  E-value=8.6e-15  Score=146.83  Aligned_cols=227  Identities=12%  Similarity=0.092  Sum_probs=159.7

Q ss_pred             HcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH-cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004249          103 ALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDA-LGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSC  181 (765)
Q Consensus       103 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  181 (765)
                      ..|++++|..+++++.+..+..          ++. .+++++|...|.++              |.++...|++++|+.+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~   58 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA   58 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence            4678889999999888877642          111 47788888887765              5567778888888888


Q ss_pred             HHHHHhcCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHH
Q 004249          182 LSEAVKADPND------FKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN------IEALKMGAKLYQKSGQIESSVDI  249 (765)
Q Consensus       182 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~  249 (765)
                      |.+++.+.+..      ..++..+|.+|...|++++|+.+|++++.+.+..      ..++..+|.+|.. |++++|+.+
T Consensus        59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~  137 (307)
T 2ifu_A           59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL  137 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence            88888764321      3567788888888888888888888887764322      3567788888877 888888888


Q ss_pred             HHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCC--ccHHHHHHHHHHHHhcCChhHHHHH
Q 004249          250 LEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKE--LLLALKIKAGICHIQLGNTDKAEIL  323 (765)
Q Consensus       250 ~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~  323 (765)
                      |++++...|....    ..++..+|.++..+|++++|+.+|++++...+....  .....+..++.++...|++++|+..
T Consensus       138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~  217 (307)
T 2ifu_A          138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC  217 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8888877665432    336778888888888888888888888887543222  1234677778888888888888888


Q ss_pred             HHhhcccCCCCh-----HHHHHHHHHHHHccccHHHHHH
Q 004249          324 LTAIHWENVSDH-----AESINEIADLFKNRELYSTALK  357 (765)
Q Consensus       324 ~~~~~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~  357 (765)
                      |++++ .. |..     ......++..+ ..|+.+.+..
T Consensus       218 ~~~al-~~-p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          218 VRESY-SI-PGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHT-TS-TTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHh-CC-CCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            88887 54 322     22344455544 4566554444

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.62  E-value=4.7e-15  Score=141.28  Aligned_cols=211  Identities=7%  Similarity=-0.057  Sum_probs=171.6

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhcCCCCCCH------
Q 004249          197 FHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMG-------AKLYQKSGQIESSVDILEDYLKGHPTEADF------  263 (765)
Q Consensus       197 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------  263 (765)
                      +..|..+ ..+++..|...|.+++..+|+.+++|..+       +.++...++..+++..+.+.+.+.|.....      
T Consensus        11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g   89 (282)
T 4f3v_A           11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG   89 (282)
T ss_dssp             HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred             HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence            3444444 57888888888888888888888888888       788888888888888888888877654331      


Q ss_pred             -------------HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhccc
Q 004249          264 -------------GVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWE  330 (765)
Q Consensus       264 -------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  330 (765)
                                   .+...++.++...|++++|.+.|..++..    .|... ..+.+|.++...+++++|+..|+.+...
T Consensus        90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~----~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~  164 (282)
T 4f3v_A           90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA----GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW  164 (282)
T ss_dssp             TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT----TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred             cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence                         13345888999999999999999888765    56666 8899999999999999999999987643


Q ss_pred             CCCCh-HHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHH
Q 004249          331 NVSDH-AESINEIADLFKNRELYSTALKYYHMLEANAGVHN-DGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDA  408 (765)
Q Consensus       331 ~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  408 (765)
                      ..+.. ..+++.+|.++...|++++|+.+|++++.....|. .+.+++.+|.++..+|+.++|...|++++..+|+ ..+
T Consensus       165 ~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~  243 (282)
T 4f3v_A          165 PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKV  243 (282)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred             CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence            21221 45899999999999999999999999986531265 6679999999999999999999999999999999 777


Q ss_pred             HHHHHH
Q 004249          409 RLTLAS  414 (765)
Q Consensus       409 ~~~l~~  414 (765)
                      +..|..
T Consensus       244 ~~aL~~  249 (282)
T 4f3v_A          244 AAALKD  249 (282)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            666643

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.62  E-value=6.7e-15  Score=161.79  Aligned_cols=153  Identities=14%  Similarity=0.111  Sum_probs=131.1

Q ss_pred             cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004249          138 LGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR  217 (765)
Q Consensus       138 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  217 (765)
                      .|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHH
Q 004249          218 QMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM---NAYDRVLKHIELVDLV  292 (765)
Q Consensus       218 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~  292 (765)
                      ++++.+|++..++..+|.++...|++++|+..|+++++.+|++..  ++..++.++...   |++++|+..+++++..
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY--ITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999998866  788999999999   9999999999999999

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.62  E-value=8.6e-15  Score=146.83  Aligned_cols=228  Identities=12%  Similarity=0.093  Sum_probs=132.4

Q ss_pred             cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 004249          138 LGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE-QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVY  216 (765)
Q Consensus       138 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  216 (765)
                      .|++++|..+++++.+..+..          ++. .+++++|+.+|.++              |.+|...|++++|+..|
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~   59 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY   59 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence            355666666666665544421          122 35566666665554              44555666666666666


Q ss_pred             HHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHHHHHH
Q 004249          217 RQMVQLCPEN------IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRVLKHI  286 (765)
Q Consensus       217 ~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A~~~~  286 (765)
                      .+++.+.+..      ..++..+|.+|...|++++|+.+|++++.+.+....    ..++..+|.+|.. |++++|+.+|
T Consensus        60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~  138 (307)
T 2ifu_A           60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY  138 (307)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence            6666554321      234555555555555555555555555554333221    1234444555544 5555555555


Q ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhcc
Q 004249          287 ELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANA  366 (765)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  366 (765)
                      ++++...+..                  |               .......++..+|.++...|++++|+.+|++++.+ 
T Consensus       139 ~~Al~~~~~~------------------~---------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-  184 (307)
T 2ifu_A          139 QQAAAVFENE------------------E---------------RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM-  184 (307)
T ss_dssp             HHHHHHHHHT------------------T---------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhC------------------C---------------ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-
Confidence            5554442110                  0               00112457778888888888888888888888876 


Q ss_pred             CCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHH-----HHHHHHHHHHHcCCHHHHHH
Q 004249          367 GVHND------GCLHLKIAECSLALKEREKSIIYFYKALQILEDNID-----ARLTLASLLLEDAKDEEAIS  427 (765)
Q Consensus       367 ~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~  427 (765)
                       .|.+      ..++..+|.++...|++++|+..|++++ .+|....     ....++..+ ..|+.+.+..
T Consensus       185 -~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          185 -YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             -HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             -HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence             3322      3477788888888899999999999999 8886542     233344444 5677766665

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.61  E-value=3.6e-14  Score=122.82  Aligned_cols=133  Identities=21%  Similarity=0.336  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 004249          127 SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL  206 (765)
Q Consensus       127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  206 (765)
                      +++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            45555555555666666666666665555555555555666666666666666666666655555555566666666666


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249          207 GNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPT  259 (765)
Q Consensus       207 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  259 (765)
                      |++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|.
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            66666666666666666655555666666666666666666666666555553

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.61  E-value=9.9e-17  Score=162.68  Aligned_cols=186  Identities=15%  Similarity=0.070  Sum_probs=161.0

Q ss_pred             HcCCHHHHHHHHHH----HHHhhCCCchHHHHHHHHHH------------HcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249          103 ALGRYEEAISVLHE----VIRLEEELPNSYHILGLVHD------------ALGNTAKAMGCYWLAACYKQKDSSLWKLIF  166 (765)
Q Consensus       103 ~~g~~~~A~~~~~~----~l~~~p~~~~~~~~l~~~~~------------~~g~~~~A~~~~~~a~~~~p~~~~~~~~la  166 (765)
                      ..+.+++|+..+..    ++.+.|..  +|...|....            .++++++|+..|++++..+|....++..+|
T Consensus        77 ~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g  154 (336)
T 1p5q_A           77 LPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG  154 (336)
T ss_dssp             CCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH
Confidence            34567888888877    77777765  4444444332            567788888888888888888999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004249          167 PWLIEQGDTTWAMSCLSEAVKADPND---------------FKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK  231 (765)
Q Consensus       167 ~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  231 (765)
                      .++...|++++|+..|++++...|.+               ..++..+|.++...|++++|+..|+++++++|+++.+++
T Consensus       155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  234 (336)
T 1p5q_A          155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLS  234 (336)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            99999999999999999999999988               689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHH-HHHHHHHHHH
Q 004249          232 MGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRV-LKHIELVDLV  292 (765)
Q Consensus       232 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~  292 (765)
                      .+|.+|...|++++|+..|+++++.+|++..  ++..++.++...|++++| ...|++++..
T Consensus       235 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~--a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          235 RRGEAHLAVNDFELARADFQKVLQLYPNNKA--AKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999876  788999999999999998 5567776655

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.60  E-value=3.4e-15  Score=147.33  Aligned_cols=195  Identities=10%  Similarity=0.004  Sum_probs=143.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI  170 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  170 (765)
                      ...+...|..++..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..++++++++|++..+++.+|.++.
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            44567778888889999999999999998888888888899999999999999999999999888888888888999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004249          171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDIL  250 (765)
Q Consensus       171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  250 (765)
                      ..|++++|+..|++++..+|+++..+...+....   ...++...........|.+..+...++.++  .|++++|+..+
T Consensus        84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~  158 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEEC  158 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTT
T ss_pred             HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHH
Confidence            9999999999999888887765322221222211   122223333344456677777766666654  68888888888


Q ss_pred             HHHHhcCCCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHH
Q 004249          251 EDYLKGHPTEADFGVIDLLASMLVQM-NAYDRVLKHIELVDLV  292 (765)
Q Consensus       251 ~~~~~~~p~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~  292 (765)
                      +++++.+|++..  ....++.++... +.+++|...|.++...
T Consensus       159 ~~al~~~p~~~~--~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          159 QRNHEGHEDDGH--IRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             SGGGTTTSCHHH--HTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             Hhhhccccchhh--hhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            888888887654  334555555555 6677888888777543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.59  E-value=1.8e-15  Score=153.34  Aligned_cols=153  Identities=15%  Similarity=0.079  Sum_probs=142.6

Q ss_pred             HcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---------------HHHHHHHHH
Q 004249          103 ALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---------------SSLWKLIFP  167 (765)
Q Consensus       103 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---------------~~~~~~la~  167 (765)
                      ..+++++|+..+++++...|..+.++..+|.+++..|++++|+..|++++.+.|.+               ..++..+|.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            45677888889999999999999999999999999999999999999999999998               689999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-
Q 004249          168 WLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESS-  246 (765)
Q Consensus       168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-  246 (765)
                      ++...|++++|+.+|++++.++|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...|++++| 
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  284 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  284 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHHHh
Q 004249          247 VDILEDYLK  255 (765)
Q Consensus       247 ~~~~~~~~~  255 (765)
                      ...|++++.
T Consensus       285 ~~~~~~~~~  293 (336)
T 1p5q_A          285 KKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            456666654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.59  E-value=3.1e-15  Score=130.82  Aligned_cols=114  Identities=10%  Similarity=-0.035  Sum_probs=54.3

Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 004249          148 YWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI  227 (765)
Q Consensus       148 ~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  227 (765)
                      |++++..+|++...++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|+++
T Consensus         7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~   86 (142)
T 2xcb_A            7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP   86 (142)
T ss_dssp             --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 004249          228 EALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA  261 (765)
Q Consensus       228 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  261 (765)
                      .+++.+|.++...|++++|+..|++++...|+++
T Consensus        87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  120 (142)
T 2xcb_A           87 RFPFHAAECHLQLGDLDGAESGFYSARALAAAQP  120 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            4444444444444444444444444444444443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.58  E-value=1.1e-14  Score=143.54  Aligned_cols=103  Identities=13%  Similarity=0.056  Sum_probs=51.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004249          158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLY  237 (765)
Q Consensus       158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  237 (765)
                      +...+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++++|++..+++.+|.++
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34444444444444455555555555544444444444555555555555555555555555555555544555555555


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCC
Q 004249          238 QKSGQIESSVDILEDYLKGHPTE  260 (765)
Q Consensus       238 ~~~g~~~~A~~~~~~~~~~~p~~  260 (765)
                      ...|++++|+..|+++++.+|++
T Consensus        83 ~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHHhCccc
Confidence            55555555555555554444433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.58  E-value=9.7e-14  Score=120.03  Aligned_cols=134  Identities=21%  Similarity=0.348  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 004249           93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQ  172 (765)
Q Consensus        93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  172 (765)
                      .++..|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            35667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 004249          173 GDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN  226 (765)
Q Consensus       173 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  226 (765)
                      |++++|+..+++++...|.+..++..+|.++...|++++|...+++++...|.+
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            999999999999999999999999999999999999999999999999998863

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.58  E-value=1.6e-14  Score=126.28  Aligned_cols=125  Identities=17%  Similarity=0.145  Sum_probs=106.6

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249          112 SVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPN  191 (765)
Q Consensus       112 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  191 (765)
                      ..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.+|++++..+|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            46777888888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004249          192 DFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKL  236 (765)
Q Consensus       192 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  236 (765)
                      ++.+++.+|.++...|++++|+..|+++++..|+++........+
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence            999999999999999999999999999999988887655444443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.55  E-value=2.2e-14  Score=131.02  Aligned_cols=130  Identities=15%  Similarity=0.206  Sum_probs=106.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH-HHHcCCH--HH
Q 004249          101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPW-LIEQGDT--TW  177 (765)
Q Consensus       101 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~g~~--~~  177 (765)
                      +...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++..+|.++.++..+|.+ +...|++  ++
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            45678888888888888888888888888888888888888888888888888888888888888888 7788888  88


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 004249          178 AMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEAL  230 (765)
Q Consensus       178 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  230 (765)
                      |+..+++++..+|.++.++..+|.++...|++++|+..|++++...|.+....
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            88888888888888888888888888888888888888888888888775443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.55  E-value=7.1e-14  Score=119.33  Aligned_cols=98  Identities=12%  Similarity=0.028  Sum_probs=46.8

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE  205 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  205 (765)
                      ..+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++..
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             hCCHHHHHHHHHHHHHhC
Q 004249          206 LGNFQRAADVYRQMVQLC  223 (765)
Q Consensus       206 ~g~~~~A~~~~~~al~~~  223 (765)
                      .|++++|+..|+++++++
T Consensus        85 ~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           85 VKEYASALETLDAARTKD  102 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHhC
Confidence            444444444444444444

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.55  E-value=2e-13  Score=128.97  Aligned_cols=134  Identities=12%  Similarity=0.111  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL  169 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  169 (765)
                      +...++..|..++..|++++|+..|++++  + .++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--D-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            44566778888888999999999988885  3 36788888999999999999999999999888888888888899999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 004249          170 IEQGDTTWAMSCLSEAVKADPNDF----------------KLKFHLASLYVELGNFQRAADVYRQMVQLCPEN  226 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  226 (765)
                      ...|++++|+..|++++...|.+.                .+++.+|.++...|++++|+..|+++++..|++
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            999999999999999888777665                888888888888888888888888888888876

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.54  E-value=1.3e-13  Score=117.61  Aligned_cols=117  Identities=11%  Similarity=-0.007  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 004249           89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPW  168 (765)
Q Consensus        89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~  168 (765)
                      .....++..|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+++.+++.+|.+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            35567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHH
Q 004249          169 LIEQGDTTWAMSCLSEAVKAD------PNDFKLKFHLASLYVE  205 (765)
Q Consensus       169 ~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~  205 (765)
                      +...|++++|+..|++++..+      |.+..++..++.+...
T Consensus        82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            999999999999999999999      8888888888877654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.53  E-value=3.9e-13  Score=126.92  Aligned_cols=132  Identities=14%  Similarity=0.047  Sum_probs=118.1

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE  205 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  205 (765)
                      ..++.+|.++...|++++|+..|++++  +| ++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++..
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            356788999999999999999999886  33 778999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249          206 LGNFQRAADVYRQMVQLCPENI----------------EALKMGAKLYQKSGQIESSVDILEDYLKGHPTE  260 (765)
Q Consensus       206 ~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  260 (765)
                      .|++++|+..|+++++..|.+.                .++..+|.++...|++++|+..|+++++..|++
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            9999999999999999888766                888999999999999999999999999988875

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.53  E-value=5.9e-13  Score=132.59  Aligned_cols=164  Identities=9%  Similarity=-0.006  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------H
Q 004249           92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELP------NSYHILGLVHDALGNTAKAMGCYWLAACYKQKD------S  159 (765)
Q Consensus        92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~------~  159 (765)
                      ..++..+..++..|+|++|+..+.+++...|...      ..++.+|.++...|++++|+..+++++...+..      .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            3444555666666666666666666665554432      223445555555555666666655555443221      2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC------C
Q 004249          160 SLWKLIFPWLIEQGDTTWAMSCLSEAV---KADPNDF----KLKFHLASLYVELGNFQRAADVYRQMVQLCPE------N  226 (765)
Q Consensus       160 ~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~  226 (765)
                      .++..+|.+|...|++++|+.+|++++   ...|++.    .++.++|.+|..+|++++|+.++++++...+.      .
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            345555555555555555555555555   2233322    34555555555555555555555555544321      1


Q ss_pred             HHHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 004249          227 IEALKMGAKLYQKSGQIESS-VDILEDYLK  255 (765)
Q Consensus       227 ~~~~~~la~~~~~~g~~~~A-~~~~~~~~~  255 (765)
                      ..++..+|.+|...|++++| ..++++++.
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            34445555555555555555 444554443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.52  E-value=1.4e-12  Score=125.90  Aligned_cols=246  Identities=13%  Similarity=0.111  Sum_probs=134.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 004249           98 ASLHYALGRYEEAISVLHEVIRLEEELP-NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTT  176 (765)
Q Consensus        98 a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~  176 (765)
                      .+..+-.|+|..++.-..   +..|.+. ...+.+.++|..+|++...       .. .+....+...++..+ . ++  
T Consensus        20 ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~-~~~~~~a~~~la~~~-~-~~--   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ-------DP-TSKLGKVLDLYVQFL-D-TK--   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC-------CS-SSTTHHHHHHHHHHH-T-TT--
T ss_pred             HHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC-------CC-CCHHHHHHHHHHHHh-c-cc--
Confidence            355666777777777332   2334333 3455566777777776631       11 111223333344333 2 22  


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004249          177 WAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCP--ENIEALKMGAKLYQKSGQIESSVDILEDYL  254 (765)
Q Consensus       177 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  254 (765)
                       |+..+++.+...+.+..++..+|.++...|++++|+.++.+.+..+|  .+.+++..++.++..+|+.+.|.+.++++.
T Consensus        85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence             66677766665545555566777777777777777777777766665  566667777777777777777777777776


Q ss_pred             hcCCC-----CCCHHHHHHHHHH--HHHhc--cHHHHHHHHHHHHHHhcCCCCc--cHHHHHHHHHHHHhcCChhHHHHH
Q 004249          255 KGHPT-----EADFGVIDLLASM--LVQMN--AYDRVLKHIELVDLVYYSGKEL--LLALKIKAGICHIQLGNTDKAEIL  323 (765)
Q Consensus       255 ~~~p~-----~~~~~~~~~l~~~--~~~~~--~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~  323 (765)
                      +.+|+     +.   ++..++..  ....|  ++.+|..+|+++...    .|.  ....+++   ++..+|++++|...
T Consensus       164 ~~~~d~~~~~d~---~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln---~~~~~g~~~eAe~~  233 (310)
T 3mv2_B          164 NAIEDTVSGDNE---MILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLN---LHLQQRNIAEAQGI  233 (310)
T ss_dssp             HHSCHHHHHHHH---HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHH---HHHHHTCHHHHHHH
T ss_pred             hcCccccccchH---HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHH---HHHHcCCHHHHHHH
Confidence            66662     21   22333333  44444  666666666665444    222  1112222   55555566665555


Q ss_pred             HHhhcccC---------CCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHH
Q 004249          324 LTAIHWEN---------VSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGC  373 (765)
Q Consensus       324 ~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  373 (765)
                      ++.++...         .|.++.++.+++.+....|+  +|.++++++...  .|+++.
T Consensus       234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~  288 (310)
T 3mv2_B          234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAF  288 (310)
T ss_dssp             HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHH
T ss_pred             HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChH
Confidence            55443321         14455555555555444454  555555555555  555543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.52  E-value=5e-13  Score=120.40  Aligned_cols=128  Identities=19%  Similarity=0.091  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 004249           92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE  171 (765)
Q Consensus        92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  171 (765)
                      ..++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+.+++..+|.++.++..+|.++..
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHH--HHHHHHhCCHHHHHHHHHHH
Q 004249          172 QGDTTWAMSCLSEAVKADPNDFKLKFHL--ASLYVELGNFQRAADVYRQM  219 (765)
Q Consensus       172 ~g~~~~A~~~~~~al~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~a  219 (765)
                      .|++++|+.+|++++..+|.+..++..+  +..+...|++++|+..+.++
T Consensus        94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            5555555555555555555555544222  22244455555555555444

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.52  E-value=4.1e-13  Score=120.95  Aligned_cols=129  Identities=15%  Similarity=0.086  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE  205 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  205 (765)
                      ..+..+|.++...|++++|+..|.+++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            44555666666666666666666666666666666666666666666666666666666666666556566666666666


Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHH
Q 004249          206 LGNFQRAADVYRQMVQLCPENIEALKM--GAKLYQKSGQIESSVDILEDYL  254 (765)
Q Consensus       206 ~g~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~~~  254 (765)
                      .|++++|+.+|++++...|.+..++..  ++..+...|++++|+..+.+..
T Consensus        94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            666666666666666655555554422  2223445555555555555443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.52  E-value=1.9e-13  Score=124.66  Aligned_cols=128  Identities=13%  Similarity=0.166  Sum_probs=118.9

Q ss_pred             HHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhCCH--HH
Q 004249          135 HDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL-YVELGNF--QR  211 (765)
Q Consensus       135 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~  211 (765)
                      +...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++..+|.++.++..+|.+ +...|++  ++
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999 8899999  99


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249          212 AADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD  262 (765)
Q Consensus       212 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  262 (765)
                      |+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|++..
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  150 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN  150 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence            999999999999999999999999999999999999999999999999876

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.52  E-value=9.1e-13  Score=127.26  Aligned_cols=275  Identities=9%  Similarity=-0.010  Sum_probs=200.8

Q ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004249          124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD-SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL  202 (765)
Q Consensus       124 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  202 (765)
                      +|+.++.+ .-.+-.|+|..++....   ++.|.+ ......+.++++.+|++...       . ..+....+...++..
T Consensus        13 ~~~~lf~i-kn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~-~~~~~~~a~~~la~~   80 (310)
T 3mv2_B           13 DPMDYFNI-KQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ-------D-PTSKLGKVLDLYVQF   80 (310)
T ss_dssp             --CCTHHH-HHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC-------C-SSSTTHHHHHHHHHH
T ss_pred             CcHHHHHH-HHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC-------C-CCCHHHHHHHHHHHH
Confidence            34444443 45566799999998544   334443 35666688899999998742       1 122233344555554


Q ss_pred             HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHH
Q 004249          203 YVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRV  282 (765)
Q Consensus       203 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A  282 (765)
                      +.  +.   |+..+++.+...+....++..+|.++...|++++|+.++.+.+..+|......++..++.++..+|+.+.|
T Consensus        81 ~~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A  155 (310)
T 3mv2_B           81 LD--TK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTA  155 (310)
T ss_dssp             HT--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hc--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHH
Confidence            42  32   88999998887666677778999999999999999999999999887333344677999999999999999


Q ss_pred             HHHHHHHHHHhcCCCC------ccHHHHHHHHHHHHhcC--ChhHHHHHHHhhcccCCCC--hHHHHHHHHHHHHccccH
Q 004249          283 LKHIELVDLVYYSGKE------LLLALKIKAGICHIQLG--NTDKAEILLTAIHWENVSD--HAESINEIADLFKNRELY  352 (765)
Q Consensus       283 ~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~  352 (765)
                      .+.++++.+.    .+      ........-+.+.+..|  ++.+|..+|+++.... |+  .+..+++   +++..|++
T Consensus       156 ~k~l~~~~~~----~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-p~~~~~~lLln---~~~~~g~~  227 (310)
T 3mv2_B          156 STIFDNYTNA----IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-PTWKTQLGLLN---LHLQQRNI  227 (310)
T ss_dssp             HHHHHHHHHH----SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-CSHHHHHHHHH---HHHHHTCH
T ss_pred             HHHHHHHHhc----CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-CCcccHHHHHH---HHHHcCCH
Confidence            9999999888    55      44444444455566666  9999999999987665 54  3334444   89999999


Q ss_pred             HHHHHHHHHHHhcc-----C---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHH
Q 004249          353 STALKYYHMLEANA-----G---VHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEE  424 (765)
Q Consensus       353 ~~A~~~~~~~~~~~-----~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  424 (765)
                      ++|...++.+++..     .   +|+++.++.+++.+....|+  +|.++++++.+.+|+++-+.-    ...+...|++
T Consensus       228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d----~~~k~~~Fd~  301 (310)
T 3mv2_B          228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH----HQEIDAKFDE  301 (310)
T ss_dssp             HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH----HHHHHHHHHH
Confidence            99999999877651     0   28899999999999999998  899999999999999985433    2223344565


Q ss_pred             HHHhc
Q 004249          425 AISLL  429 (765)
Q Consensus       425 A~~~~  429 (765)
                      +..-|
T Consensus       302 ~~~ky  306 (310)
T 3mv2_B          302 LVRKY  306 (310)
T ss_dssp             HHHTC
T ss_pred             HHHHh
Confidence            55444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.51  E-value=3.2e-13  Score=145.79  Aligned_cols=185  Identities=9%  Similarity=0.054  Sum_probs=158.7

Q ss_pred             HHHHHHHHHcCCH-HHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCC----------HHHHHHHHHHHhccCCCCHHHHH
Q 004249           95 LGDASLHYALGRY-EEAISVLHEVIRLEEELPNSYHILGLVHDALGN----------TAKAMGCYWLAACYKQKDSSLWK  163 (765)
Q Consensus        95 ~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~a~~~~p~~~~~~~  163 (765)
                      ..........|.+ ++|+..+.+++..+|++..+|...+.++...|+          +++++.++.+++..+|++..+|.
T Consensus        32 ~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~  111 (567)
T 1dce_A           32 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH  111 (567)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3333444556655 577999999999999999999999999999998          99999999999999999999999


Q ss_pred             HHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004249          164 LIFPWLIEQG--DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG-NFQRAADVYRQMVQLCPENIEALKMGAKLYQKS  240 (765)
Q Consensus       164 ~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  240 (765)
                      ..+.++...|  ++++++.+++++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..+|..++.++...
T Consensus       112 hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence            9999999999  7799999999999999999999999999999999 899999999999999999999999999998875


Q ss_pred             --------------CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHH
Q 004249          241 --------------GQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDR  281 (765)
Q Consensus       241 --------------g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~  281 (765)
                                    +.++++++++.+++..+|++..  +|+.++.++...+++++
T Consensus       192 ~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s--aW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          192 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS--AWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH--HHHHHHHHHSCCCCCSC
T ss_pred             cccccccccccccHHHHHHHHHHHHHHHhhCCCCcc--HHHHHHHHHhcCCCccc
Confidence                          4467777777777777777766  66677777666665433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.51  E-value=2.8e-13  Score=116.84  Aligned_cols=120  Identities=13%  Similarity=-0.045  Sum_probs=65.9

Q ss_pred             cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249           88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP  167 (765)
Q Consensus        88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  167 (765)
                      +.....++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++..+|.+..++..+|.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   92 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA   92 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            33444455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 004249          168 WLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG  207 (765)
Q Consensus       168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  207 (765)
                      ++...|++++|+.+|++++..+|.+..++..++.++...|
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            5555555555555555555555555555555555555443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.51  E-value=7.2e-13  Score=124.52  Aligned_cols=162  Identities=13%  Similarity=0.059  Sum_probs=145.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcC----CHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALG----NTAKAMGCYWLAACYKQKDSSLWKLIF  166 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~a~~~~p~~~~~~~~la  166 (765)
                      ...++..|..+...+++++|+..|++++..  .++.+++.+|.+|.. +    ++++|+.+|+++.+  +.++.+++.+|
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg   92 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLA   92 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHH
Confidence            345667778899999999999999999764  689999999999998 7    99999999999965  67999999999


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004249          167 PWLIE----QGDTTWAMSCLSEAVKADP--NDFKLKFHLASLYVE----LGNFQRAADVYRQMVQLCPENIEALKMGAKL  236 (765)
Q Consensus       167 ~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  236 (765)
                      .+|..    .+++++|+.+|+++++..|  .++.+++.+|.+|..    .+++++|+.+|+++++. |.++.+++.+|.+
T Consensus        93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~  171 (212)
T 3rjv_A           93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMM  171 (212)
T ss_dssp             HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHH
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence            99998    8999999999999999887  358999999999999    88999999999999998 7778899999999


Q ss_pred             HHHc-C-----CHHHHHHHHHHHHhcCC
Q 004249          237 YQKS-G-----QIESSVDILEDYLKGHP  258 (765)
Q Consensus       237 ~~~~-g-----~~~~A~~~~~~~~~~~p  258 (765)
                      |... |     ++++|+.+|+++.+...
T Consensus       172 y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          172 FQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            9864 3     89999999999998754

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.51  E-value=2.6e-13  Score=116.53  Aligned_cols=118  Identities=18%  Similarity=0.158  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI  170 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  170 (765)
                      ...++..|..++..|++++|+..|++++...|.++.++..+|.++...|++++|+..+.+++..+|.++.++..+|.++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence            33444445555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q 004249          171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN  208 (765)
Q Consensus       171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  208 (765)
                      ..|++++|+.++++++..+|.++.++..++.++...|+
T Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            55555555555555555555555555555555444443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.51  E-value=3.6e-14  Score=132.16  Aligned_cols=146  Identities=14%  Similarity=0.015  Sum_probs=93.6

Q ss_pred             HHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH----------------HHHHHH
Q 004249          102 YALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS----------------SLWKLI  165 (765)
Q Consensus       102 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~----------------~~~~~l  165 (765)
                      ...|++++|.+.+.......+.....+..+|.+++..|++++|+..|.+++...|.++                .++..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   94 (198)
T 2fbn_A           15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL   94 (198)
T ss_dssp             -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555556666666666666666666666666666666554                666677


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004249          166 FPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIES  245 (765)
Q Consensus       166 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  245 (765)
                      |.++...|++++|+.++++++..+|.++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...++..+
T Consensus        95 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  174 (198)
T 2fbn_A           95 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK  174 (198)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777766666555


Q ss_pred             HH
Q 004249          246 SV  247 (765)
Q Consensus       246 A~  247 (765)
                      +.
T Consensus       175 ~~  176 (198)
T 2fbn_A          175 KD  176 (198)
T ss_dssp             --
T ss_pred             HH
Confidence            54

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.49  E-value=4.5e-13  Score=115.49  Aligned_cols=122  Identities=18%  Similarity=0.116  Sum_probs=117.2

Q ss_pred             hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004249          121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLA  200 (765)
Q Consensus       121 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  200 (765)
                      .|.++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.++++++..+|.++.++..+|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            35667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004249          201 SLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ  242 (765)
Q Consensus       201 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  242 (765)
                      .++...|++++|+..|++++..+|.+..++..++.++...|+
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999988774

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.49  E-value=3.6e-14  Score=132.17  Aligned_cols=164  Identities=13%  Similarity=0.019  Sum_probs=125.8

Q ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----------
Q 004249          125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF-----------  193 (765)
Q Consensus       125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------  193 (765)
                      +......+.+....|++++|.+.+.......+.....+..+|..+...|++++|+..|++++...|.++           
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   83 (198)
T 2fbn_A            4 SHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK   83 (198)
T ss_dssp             ------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH
T ss_pred             cccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence            334445666777788888888888776666666778899999999999999999999999999988887           


Q ss_pred             -----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 004249          194 -----KLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDL  268 (765)
Q Consensus       194 -----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~  268 (765)
                           .++..+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+..|++++..+|++..  ++..
T Consensus        84 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~  161 (198)
T 2fbn_A           84 KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD--IRNS  161 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH--HHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH--HHHH
Confidence                 899999999999999999999999999999999999999999999999999999999999999998866  7789


Q ss_pred             HHHHHHHhccHHHHH-HHHHHHH
Q 004249          269 LASMLVQMNAYDRVL-KHIELVD  290 (765)
Q Consensus       269 l~~~~~~~~~~~~A~-~~~~~~~  290 (765)
                      ++.++...++..++. ..+.++.
T Consensus       162 l~~~~~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          162 YELCVNKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999988888777 4444443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.49  E-value=4.8e-13  Score=120.16  Aligned_cols=113  Identities=18%  Similarity=0.149  Sum_probs=72.1

Q ss_pred             cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249           88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFP  167 (765)
Q Consensus        88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  167 (765)
                      +.....++..|..++..|+|++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++.++|++..+|+.+|.
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34455556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004249          168 WLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLA  200 (765)
Q Consensus       168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  200 (765)
                      ++...|++++|+.+|++++.++|++..++...+
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  120 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG  120 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            666666666666666666666666655444444

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.49  E-value=6.4e-13  Score=114.06  Aligned_cols=124  Identities=15%  Similarity=0.029  Sum_probs=119.3

Q ss_pred             hhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004249          120 LEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHL  199 (765)
Q Consensus       120 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  199 (765)
                      .+|.++..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++...|.++.++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   86 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM   86 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence            45667789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 004249          200 ASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQI  243 (765)
Q Consensus       200 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  243 (765)
                      |.++...|++++|+..|++++...|++..++..++.++...|++
T Consensus        87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999876

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.49  E-value=2e-12  Score=128.70  Aligned_cols=172  Identities=9%  Similarity=0.075  Sum_probs=135.5

Q ss_pred             hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 004249          121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS------SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND--  192 (765)
Q Consensus       121 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--  192 (765)
                      +|.....+...+..+...|++++|+..+.+++...|...      ..++.+|.++...|++++|+..+++++...+..  
T Consensus        71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  150 (293)
T 2qfc_A           71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence            344455667788888999999999999999988877654      335568888888999999999999998764433  


Q ss_pred             ----HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 004249          193 ----FKLKFHLASLYVELGNFQRAADVYRQMV---QLCPENI----EALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA  261 (765)
Q Consensus       193 ----~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  261 (765)
                          ..++..+|.+|...|++++|+.+|++++   +..|++.    .++.++|.+|...|++++|+.++++++...+...
T Consensus       151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~  230 (293)
T 2qfc_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN  230 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence                4678889999999999999999999998   4556542    5788899999999999999999998887643211


Q ss_pred             ----CHHHHHHHHHHHHHhccHHHH-HHHHHHHHHH
Q 004249          262 ----DFGVIDLLASMLVQMNAYDRV-LKHIELVDLV  292 (765)
Q Consensus       262 ----~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~  292 (765)
                          ...+++.+|.++...|++++| ..++++++..
T Consensus       231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence                144677888889999998888 7778888776

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.49  E-value=6.5e-13  Score=132.26  Aligned_cols=163  Identities=9%  Similarity=-0.022  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCch------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------HH
Q 004249           93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPN------SYHILGLVHDALGNTAKAMGCYWLAACYKQKD------SS  160 (765)
Q Consensus        93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~------~~  160 (765)
                      .+...+..++..|++++|+..+++++...+..+.      .+..+|.++...|++++|+.+|++++...+..      ..
T Consensus        77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  156 (293)
T 3u3w_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            3334455566666666666666666655444432      12235555555555555555555555532211      12


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc---C----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------H
Q 004249          161 LWKLIFPWLIEQGDTTWAMSCLSEAVKA---D----PNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN------I  227 (765)
Q Consensus       161 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~  227 (765)
                      ++..+|.+|...|++++|+.+|++++..   .    +....++.++|.+|..+|++++|+.++++++++.+..      +
T Consensus       157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~  236 (293)
T 3u3w_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            3455555555555555555555555531   1    1112344455555555555555555555554433221      3


Q ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q 004249          228 EALKMGAKLYQKSGQ-IESSVDILEDYLK  255 (765)
Q Consensus       228 ~~~~~la~~~~~~g~-~~~A~~~~~~~~~  255 (765)
                      .++..+|.++...|+ +++|+..|++++.
T Consensus       237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            344444444444442 3444444444443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.48  E-value=8.5e-13  Score=118.56  Aligned_cols=106  Identities=12%  Similarity=0.057  Sum_probs=68.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004249          157 KDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKL  236 (765)
Q Consensus       157 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  236 (765)
                      .+...+..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34455666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249          237 YQKSGQIESSVDILEDYLKGHPTEAD  262 (765)
Q Consensus       237 ~~~~g~~~~A~~~~~~~~~~~p~~~~  262 (765)
                      +...|++++|+..|+++++.+|++..
T Consensus        89 ~~~~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCchH
Confidence            66666666666666666666666655

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.46  E-value=2.5e-12  Score=109.28  Aligned_cols=116  Identities=23%  Similarity=0.333  Sum_probs=72.7

Q ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249          125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV  204 (765)
Q Consensus       125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  204 (765)
                      ..+++.+|.++...|++++|+..|.+++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            45556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004249          205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS  240 (765)
Q Consensus       205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  240 (765)
                      ..|++++|+..+++++...|.++.++..++.++...
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            666666666666666666666666666666655543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.46  E-value=4.5e-13  Score=114.87  Aligned_cols=116  Identities=18%  Similarity=0.144  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL  169 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  169 (765)
                      ....++..|..++..|+|++|+..|+++++.+|+++..                      .++...|.+..+|.++|.++
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~----------------------~a~~~~~~~a~a~~n~g~al   67 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE----------------------EAFDHAGFDAFCHAGLAEAL   67 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT----------------------SCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch----------------------hhhhhccchHHHHHHHHHHH
Confidence            45667888899999999999999999999999985431                      01111122223555555555


Q ss_pred             HHcCCHHHHHHHHHHHHhc-------CCCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 004249          170 IEQGDTTWAMSCLSEAVKA-------DPNDFKLK----FHLASLYVELGNFQRAADVYRQMVQLCPENI  227 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~-------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  227 (765)
                      ..+|++++|+.++++++++       +|++..+|    +++|.++..+|++++|+..|++++++.|++.
T Consensus        68 ~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~  136 (159)
T 2hr2_A           68 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  136 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence            5555555555555555555       66666666    6666666666666666666666666665553

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.46  E-value=5.6e-13  Score=113.44  Aligned_cols=99  Identities=11%  Similarity=0.017  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-------HHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF-------KLKFH  198 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~  198 (765)
                      .++..+|.+++..|++++|+.+|+++++++|+++.+|..+|.++..+|++++|+..++++++++|++.       .++..
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555555544321       24445


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCC
Q 004249          199 LASLYVELGNFQRAADVYRQMVQLCP  224 (765)
Q Consensus       199 la~~~~~~g~~~~A~~~~~~al~~~p  224 (765)
                      +|.++...|++++|+..|++++...|
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            55555555555555555555555544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.46  E-value=4.3e-13  Score=112.96  Aligned_cols=101  Identities=16%  Similarity=0.121  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 004249           93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQ  172 (765)
Q Consensus        93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  172 (765)
                      .++..|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            45677788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHhcCCCCH
Q 004249          173 GDTTWAMSCLSEAVKADPNDF  193 (765)
Q Consensus       173 g~~~~A~~~~~~al~~~p~~~  193 (765)
                      |++++|+..|+++++.+|.+.
T Consensus        99 g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHhCcCCC
Confidence            888888888888888877654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.45  E-value=6.6e-14  Score=148.31  Aligned_cols=159  Identities=14%  Similarity=0.072  Sum_probs=83.3

Q ss_pred             cCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004249          104 LGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLS  183 (765)
Q Consensus       104 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  183 (765)
                      .+++++|+..|+.++...|..+.++..+|.+++..|++++|+..|.+++.++|.+....            .+.      
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~------------~~~------  308 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS------------EKE------  308 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC------------HHH------
T ss_pred             hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC------------hHH------
Confidence            34555666666666666666677777777777777777777777777777766652100            000      


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH
Q 004249          184 EAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADF  263 (765)
Q Consensus       184 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  263 (765)
                       .....+....++.++|.++..+|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++.. 
T Consensus       309 -~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~-  386 (457)
T 1kt0_A          309 -SKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA-  386 (457)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C-
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-
Confidence             000001113444555555555555555555555555555555555555555555555555555555555555555444 


Q ss_pred             HHHHHHHHHHHHhccHHHHH
Q 004249          264 GVIDLLASMLVQMNAYDRVL  283 (765)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~A~  283 (765)
                       ++..++.++...++++++.
T Consensus       387 -a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          387 -ARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             -HHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHH
Confidence             4445555555555554444

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.45  E-value=1.7e-10  Score=122.64  Aligned_cols=61  Identities=10%  Similarity=0.046  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004249          352 YSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASL  415 (765)
Q Consensus       352 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  415 (765)
                      .+.....|++++..  .|..+.+|+..+..+...|+.+.|...|++++.. |.+...++..+..
T Consensus       195 ~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~  255 (493)
T 2uy1_A          195 ESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLV  255 (493)
T ss_dssp             HHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhh
Confidence            34567889999887  7899999999999999999999999999999999 9887766654443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.45  E-value=6.3e-13  Score=111.91  Aligned_cols=100  Identities=20%  Similarity=0.126  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 004249          127 SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL  206 (765)
Q Consensus       127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  206 (765)
                      .++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            35556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHHhCCCC
Q 004249          207 GNFQRAADVYRQMVQLCPEN  226 (765)
Q Consensus       207 g~~~~A~~~~~~al~~~p~~  226 (765)
                      |++++|+..|+++++.+|.+
T Consensus        99 g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHC-----
T ss_pred             CCHHHHHHHHHHHHHhCcCC
Confidence            66666666666666666554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.45  E-value=1.1e-12  Score=113.74  Aligned_cols=104  Identities=14%  Similarity=0.108  Sum_probs=51.2

Q ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 004249          122 EELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLAS  201 (765)
Q Consensus       122 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  201 (765)
                      |.++..++.+|.+++..|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   85 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   85 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            34444444455555555555555555555544444444444444555444555555555555444444444444444444


Q ss_pred             HHHHhCCHHHHHHHHHHHHHhCCC
Q 004249          202 LYVELGNFQRAADVYRQMVQLCPE  225 (765)
Q Consensus       202 ~~~~~g~~~~A~~~~~~al~~~p~  225 (765)
                      ++...|++++|+..|++++...|+
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHChh
Confidence            444444444444444444444443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.44  E-value=4.1e-10  Score=119.69  Aligned_cols=360  Identities=12%  Similarity=0.002  Sum_probs=248.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHhcc---CCCCHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGN-TAKAMGCYWLAACY---KQKDSSLWKLI  165 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~---~p~~~~~~~~l  165 (765)
                      .+...+..+...+-.|+++.+..+|++++...| +.+.|..........+. .+.....|+.++..   +|.+...|...
T Consensus        13 ~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y   91 (493)
T 2uy1_A           13 SPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY   91 (493)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence            355667777777777999999999999999888 77788887777766663 45567788888764   67888999888


Q ss_pred             HHHHH----HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--------------HhCCHHHHHHHHHHHHHhCCC-C
Q 004249          166 FPWLI----EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV--------------ELGNFQRAADVYRQMVQLCPE-N  226 (765)
Q Consensus       166 a~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--------------~~g~~~~A~~~~~~al~~~p~-~  226 (765)
                      +..+.    ..|+.+.+..+|++++...+.+..-++..-..+.              ..+.+..|...|+.+....+. +
T Consensus        92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s  171 (493)
T 2uy1_A           92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS  171 (493)
T ss_dssp             HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence            77654    3467888999999999964343332222111111              123344555556655544333 3


Q ss_pred             HHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCc
Q 004249          227 IEALKMGAKLYQKS--GQ-----IESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKEL  299 (765)
Q Consensus       227 ~~~~~~la~~~~~~--g~-----~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  299 (765)
                      ...|......-...  |-     .+.....|++++...|..+.  +|...+..+...|+.+.|..+|++++.. |.    
T Consensus       172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~--lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~----  244 (493)
T 2uy1_A          172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEE--VYFFYSEYLIGIGQKEKAKKVVERGIEM-SD----  244 (493)
T ss_dssp             HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC----
T ss_pred             HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC----
Confidence            44554444432221  11     34567899999999998755  7889999999999999999999999998 43    


Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHHhhcc-c--------CCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCC
Q 004249          300 LLALKIKAGICHIQLGNTDKAEILLTAIHW-E--------NVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHN  370 (765)
Q Consensus       300 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  370 (765)
                      ....+...+..    .+.++....+..... .        ..+....+|...+......+..+.|..+|+++ ..  .+.
T Consensus       245 ~~~l~~~y~~~----~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~--~~~  317 (493)
T 2uy1_A          245 GMFLSLYYGLV----MDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN--EGV  317 (493)
T ss_dssp             SSHHHHHHHHH----TTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--SCC
T ss_pred             cHHHHHHHHhh----cchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--CCC
Confidence            22333333322    111222111111110 0        01222457788888887888999999999999 44  334


Q ss_pred             CHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhh
Q 004249          371 DGCLHLKIAECSLALK-EREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWW  449 (765)
Q Consensus       371 ~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  449 (765)
                      ...+|...|.+....+ +.+.|...|+.+++..|++++.+...+......|+.+.|..+|+++..    .          
T Consensus       318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k----~----------  383 (493)
T 2uy1_A          318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK----T----------  383 (493)
T ss_dssp             CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC----B----------
T ss_pred             ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----H----------
Confidence            6678887788877777 599999999999999999999888888888999999999999999843    1          


Q ss_pred             hhhHHHHHHHHHHHhcchhHHHHHhhHHHHh
Q 004249          450 LNIRIKIKLCRIYKAKGMIEGFVDMLLPLVC  480 (765)
Q Consensus       450 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  480 (765)
                        ..++......-...|+.+.+..++.+.+.
T Consensus       384 --~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          384 --SRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             --HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence              35666677777778988888777877764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.43  E-value=2.1e-12  Score=109.84  Aligned_cols=110  Identities=13%  Similarity=-0.013  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH-------HH
Q 004249           89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS-------SL  161 (765)
Q Consensus        89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-------~~  161 (765)
                      .........|..++..|+|++|+..|++++..+|+++.++..+|.+|..+|++++|+..|+++++++|++.       .+
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            34455667899999999999999999999999999999999999999999999999999999999987653       57


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004249          162 WKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHL  199 (765)
Q Consensus       162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  199 (765)
                      +..+|.++...|++++|+.+|++++...| +++....+
T Consensus        86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l  122 (127)
T 4gcn_A           86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKKV  122 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHHH
Confidence            88899999999999999999999999887 45554443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.43  E-value=1.1e-12  Score=117.48  Aligned_cols=117  Identities=9%  Similarity=0.004  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------hCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249           89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRL------------------EEELPNSYHILGLVHDALGNTAKAMGCYWL  150 (765)
Q Consensus        89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  150 (765)
                      ..+..+...|..++..|+|++|+..|.+++..                  +|.+..++..+|.++..+|++++|+..+.+
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            35667788899999999999999999999988                  555556666666666666666666666666


Q ss_pred             HhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHH
Q 004249          151 AACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDF-KLKFHLASLYVE  205 (765)
Q Consensus       151 a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~  205 (765)
                      ++.++|.++.+++.+|.++..+|++++|+..|++++.++|+++ .+...++.+...
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER  144 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            6666666666666666666666666666666666666666665 444455544443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.43  E-value=2.3e-13  Score=144.13  Aligned_cols=149  Identities=13%  Similarity=0.138  Sum_probs=106.8

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHH
Q 004249          174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN---------------IEALKMGAKLYQ  238 (765)
Q Consensus       174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~  238 (765)
                      ++++|+..++.++...|....++..+|.++...|++++|+..|++++++.|.+               ..++.++|.+|.
T Consensus       249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~  328 (457)
T 1kt0_A          249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL  328 (457)
T ss_dssp             EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444443334444444444444444444444444444444444443               688999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChh
Q 004249          239 KSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTD  318 (765)
Q Consensus       239 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  318 (765)
                      .+|++++|+..|++++..+|++..  +++.+|.++..+|++++|+..|++++++    .|....++..++.++...++++
T Consensus       329 ~~g~~~~A~~~~~~al~~~p~~~~--a~~~~g~a~~~~g~~~~A~~~~~~al~l----~P~~~~a~~~l~~~~~~~~~~~  402 (457)
T 1kt0_A          329 KLREYTKAVECCDKALGLDSANEK--GLYRRGEAQLLMNEFESAKGDFEKVLEV----NPQNKAARLQISMCQKKAKEHN  402 (457)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHTT----C----CHHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCCccHH--HHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999866  8899999999999999999999999999    7788899999999999999999


Q ss_pred             HHHH-HHHhhc
Q 004249          319 KAEI-LLTAIH  328 (765)
Q Consensus       319 ~A~~-~~~~~~  328 (765)
                      ++.. .+.+++
T Consensus       403 ~a~~~~~~~~f  413 (457)
T 1kt0_A          403 ERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHH
Confidence            8875 455554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.42  E-value=8.1e-13  Score=113.31  Aligned_cols=115  Identities=11%  Similarity=-0.050  Sum_probs=93.6

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE  205 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  205 (765)
                      ..+...|..++..|++++|+..|+++++++|+++..                      .++...|.+..+|.++|.++..
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~----------------------~a~~~~~~~a~a~~n~g~al~~   69 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE----------------------EAFDHAGFDAFCHAGLAEALAG   69 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT----------------------SCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch----------------------hhhhhccchHHHHHHHHHHHHH
Confidence            455666777777777777777777777777665432                      0111223344599999999999


Q ss_pred             hCCHHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249          206 LGNFQRAADVYRQMVQL-------CPENIEAL----KMGAKLYQKSGQIESSVDILEDYLKGHPTEAD  262 (765)
Q Consensus       206 ~g~~~~A~~~~~~al~~-------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  262 (765)
                      +|++++|+..|++++++       +|++..+|    +++|.++..+|++++|+..|++++++.|++..
T Consensus        70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence            99999999999999999       99999999    99999999999999999999999999999876

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.42  E-value=3.8e-12  Score=110.31  Aligned_cols=106  Identities=13%  Similarity=0.057  Sum_probs=99.9

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004249          154 YKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMG  233 (765)
Q Consensus       154 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  233 (765)
                      .+|.++..+..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.+++.+
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249          234 AKLYQKSGQIESSVDILEDYLKGHPT  259 (765)
Q Consensus       234 a~~~~~~g~~~~A~~~~~~~~~~~p~  259 (765)
                      |.++...|++++|+..|++++...|+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            99999999999999999999998887

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.42  E-value=1.8e-12  Score=121.25  Aligned_cols=158  Identities=12%  Similarity=0.097  Sum_probs=91.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHHcCC
Q 004249          101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACY------KQKDSSLWKLIFPWLIEQGD  174 (765)
Q Consensus       101 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~la~~~~~~g~  174 (765)
                      ++..|++++|...++.+....+..+.++..+|.++...|++++|+..+++++..      .|....++..+|.++...|+
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            345677777777544433322244566777777777777777777777777662      23334556666777777777


Q ss_pred             HHHHHHHHHHHHhc---CCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcC
Q 004249          175 TTWAMSCLSEAVKA---DPND----FKLKFHLASLYVELGNFQRAADVYRQMVQLCPE--N----IEALKMGAKLYQKSG  241 (765)
Q Consensus       175 ~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g  241 (765)
                      +++|+..+++++..   .+++    ..++..+|.++...|++++|+..+++++...+.  +    ..++..+|.++...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            77777777666665   2322    344566666666666666666666666654221  1    123455666666666


Q ss_pred             CHHHHHHHHHHHHhcCC
Q 004249          242 QIESSVDILEDYLKGHP  258 (765)
Q Consensus       242 ~~~~A~~~~~~~~~~~p  258 (765)
                      ++++|+..++++++...
T Consensus       162 ~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          162 NLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            66666666666555433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.41  E-value=6.6e-12  Score=105.34  Aligned_cols=111  Identities=16%  Similarity=0.081  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 004249           92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE  171 (765)
Q Consensus        92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  171 (765)
                      ..++..|..++..|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004249          172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASL  202 (765)
Q Consensus       172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  202 (765)
                      .|++++|+..+++++..+|.++.++..++.+
T Consensus        85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            5555555555555555555555555554443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.41  E-value=4.9e-12  Score=106.14  Aligned_cols=113  Identities=19%  Similarity=0.102  Sum_probs=84.1

Q ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249          125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV  204 (765)
Q Consensus       125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  204 (765)
                      +..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            45667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004249          205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLY  237 (765)
Q Consensus       205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  237 (765)
                      ..|++++|+..++++++..|+++.++..++.+.
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            777777777777777777777777766666553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.41  E-value=7.5e-12  Score=135.08  Aligned_cols=174  Identities=9%  Similarity=0.053  Sum_probs=160.4

Q ss_pred             CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC--
Q 004249          140 NTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGD----------TTWAMSCLSEAVKADPNDFKLKFHLASLYVELG--  207 (765)
Q Consensus       140 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--  207 (765)
                      ..++|+..+.+++..+|++..+|...+.++...|+          +++++.++++++..+|++..+|...+.++...|  
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~  123 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence            34678999999999999999999999999999998          999999999999999999999999999999999  


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh----------
Q 004249          208 NFQRAADVYRQMVQLCPENIEALKMGAKLYQKSG-QIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM----------  276 (765)
Q Consensus       208 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~----------  276 (765)
                      ++++++..+.++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..  +|+..+.++...          
T Consensus       124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~s--aW~~r~~ll~~l~~~~~~~~~~  201 (567)
T 1dce_A          124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS--SWHYRSCLLPQLHPQPDSGPQG  201 (567)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH--HHHHHHHHHHHHSCCCCSSSCC
T ss_pred             cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCcc--HHHHHHHHHHhhcccccccccc
Confidence            7799999999999999999999999999999999 999999999999999999877  899999998875          


Q ss_pred             ----ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhH
Q 004249          277 ----NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDK  319 (765)
Q Consensus       277 ----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  319 (765)
                          +.++++++++.+++..    .|....+|+.++.++...+.+++
T Consensus       202 ~~~~~~~~eel~~~~~ai~~----~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          202 RLPENVLLKELELVQNAFFT----DPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SSCHHHHHHHHHHHHHHHHH----CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccHHHHHHHHHHHHHHHhh----CCCCccHHHHHHHHHhcCCCccc
Confidence                6789999999999988    77788888888888877777554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.40  E-value=5.7e-12  Score=125.37  Aligned_cols=166  Identities=8%  Similarity=0.110  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHH
Q 004249          128 YHILGLVHDALGNTAKAMGCYWLAACYKQKDSS------LWKLIFPWLIEQGDTTWAMSCLSEAVKADPND------FKL  195 (765)
Q Consensus       128 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~  195 (765)
                      +...+..+...|++++|+..+++++...+..+.      .+..+|.++...|++++|+.+|++++...+..      ..+
T Consensus        78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 3u3w_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            344577888999999999999999998776654      23358888888999999999999999864332      347


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HH
Q 004249          196 KFHLASLYVELGNFQRAADVYRQMVQLC---PE----NIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FG  264 (765)
Q Consensus       196 ~~~la~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~  264 (765)
                      +..+|.+|...|++++|+.+|+++++..   |.    ...++.++|.+|...|++++|+.+++++++..+....    ..
T Consensus       158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~  237 (293)
T 3u3w_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            8999999999999999999999998532   12    2457889999999999999999999999887543321    45


Q ss_pred             HHHHHHHHHHHhc-cHHHHHHHHHHHHHHh
Q 004249          265 VIDLLASMLVQMN-AYDRVLKHIELVDLVY  293 (765)
Q Consensus       265 ~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~  293 (765)
                      ++..+|.++...| .+++|+..+++++...
T Consensus       238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          238 LYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            7889999999999 4699999999998873

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.40  E-value=1.2e-11  Score=104.98  Aligned_cols=117  Identities=21%  Similarity=0.279  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI  170 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  170 (765)
                      ...++..|..+...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 004249          171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG  207 (765)
Q Consensus       171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  207 (765)
                      ..|++++|+..+++++..+|.++.++..++.++...|
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999987765

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.40  E-value=2.1e-11  Score=129.20  Aligned_cols=202  Identities=13%  Similarity=0.073  Sum_probs=165.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc-----------------hHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 004249           93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELP-----------------NSYHILGLVHDALGNTAKAMGCYWLAACYK  155 (765)
Q Consensus        93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  155 (765)
                      ..+.+|..+...|+|++|++.|.++++..|...                 .++..+|.+|...|++++|++++.+++...
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            357788999999999999999999999888653                 358899999999999999999999998765


Q ss_pred             CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 004249          156 QKDS------SLWKLIFPWLIEQGDTTWAMSCLSEAVKAD------PNDFKLKFHLASLYVELGNFQRAADVYRQMVQLC  223 (765)
Q Consensus       156 p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  223 (765)
                      +...      .+...++.++...|++++|+.++++++...      +....++..+|.++...|++++|+..+++++...
T Consensus        86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~  165 (434)
T 4b4t_Q           86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF  165 (434)
T ss_dssp             HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence            4432      344567888888999999999999988752      2336788999999999999999999999987752


Q ss_pred             ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          224 ------PENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-----FGVIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       224 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                            +....++..++.+|...|++++|...+++++...+....     ...+..+|.++...|++++|...|.+++..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence                  223678899999999999999999999999876543322     335667888888899999999999999877


Q ss_pred             hc
Q 004249          293 YY  294 (765)
Q Consensus       293 ~~  294 (765)
                      +.
T Consensus       246 ~~  247 (434)
T 4b4t_Q          246 YH  247 (434)
T ss_dssp             HH
T ss_pred             hh
Confidence            44

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.39  E-value=1.8e-12  Score=116.17  Aligned_cols=116  Identities=15%  Similarity=0.109  Sum_probs=92.4

Q ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHhcc------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004249          125 PNSYHILGLVHDALGNTAKAMGCYWLAACY------------------KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAV  186 (765)
Q Consensus       125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  186 (765)
                      +..+...|..++..|++++|+..|.+++..                  +|.+..++..+|.++..+|++++|+..+++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            467888999999999999999999999988                  55566777888888888888888888888888


Q ss_pred             hcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHc
Q 004249          187 KADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI-EALKMGAKLYQKS  240 (765)
Q Consensus       187 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~  240 (765)
                      .++|.++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+....
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  145 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR  145 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888777 5555555554433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=8e-12  Score=109.88  Aligned_cols=113  Identities=15%  Similarity=0.080  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEEL---PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIF  166 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la  166 (765)
                      ....++..|..++..|++++|+..|++++..+|++   ..++..+|.++...|++++|+..+++++..+|+++.+++.+|
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  106 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS  106 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence            34445555566666666666666666666665554   455555555555555555555555555555555555555555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004249          167 PWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL  202 (765)
Q Consensus       167 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  202 (765)
                      .++...|++++|+.+|++++..+|++..++..++.+
T Consensus       107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A          107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            555555555555555555555555555555544444

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.38  E-value=1.2e-11  Score=105.73  Aligned_cols=108  Identities=16%  Similarity=0.027  Sum_probs=63.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHH
Q 004249           95 LGDASLHYALGRYEEAISVLHEVIRLEEELP---NSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPW  168 (765)
Q Consensus        95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~  168 (765)
                      +..|..++..|++++|+..|++++...|+++   .+++.+|.++...|++++|+..|++++..+|++   +.+++.+|.+
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~   85 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence            4455556666666666666666666666555   456666666666666666666666666666655   5555666666


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004249          169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL  202 (765)
Q Consensus       169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  202 (765)
                      +...|++++|+..|++++...|+++.+...+..+
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l  119 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL  119 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            6666666666666666666556555544444333

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.38  E-value=9.2e-12  Score=116.34  Aligned_cols=159  Identities=11%  Similarity=-0.019  Sum_probs=123.0

Q ss_pred             HHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhCC
Q 004249          135 HDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA------DPNDFKLKFHLASLYVELGN  208 (765)
Q Consensus       135 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~  208 (765)
                      .+..|++++|...++......+....++..+|.++...|++++|+..+++++..      .|....++..+|.++...|+
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            356789999999665554433356788889999999999999999999999883      34456778899999999999


Q ss_pred             HHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhc
Q 004249          209 FQRAADVYRQMVQL---CPEN----IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMN  277 (765)
Q Consensus       209 ~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~  277 (765)
                      +++|+..+++++..   .+++    ..++..+|.++...|++++|+..+++++...+....    ..++..+|.++...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            99999999999887   4433    456888999999999999999999998876443322    224568899999999


Q ss_pred             cHHHHHHHHHHHHHHh
Q 004249          278 AYDRVLKHIELVDLVY  293 (765)
Q Consensus       278 ~~~~A~~~~~~~~~~~  293 (765)
                      ++++|+..+++++...
T Consensus       162 ~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          162 NLLEAQQHWLRARDIF  177 (203)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999988874

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.38  E-value=9.6e-12  Score=106.44  Aligned_cols=114  Identities=11%  Similarity=-0.038  Sum_probs=88.9

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS---SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND---FKLKFHL  199 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l  199 (765)
                      .+++.+|.++...|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..|++++..+|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3567778888888888888888888888877777   678888888888888888888888888888877   7778888


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004249          200 ASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK  239 (765)
Q Consensus       200 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  239 (765)
                      |.++...|++++|+..|++++...|+++.+......+-..
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            8888888888888888888888888877666555544433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.36  E-value=5.6e-12  Score=104.64  Aligned_cols=106  Identities=14%  Similarity=0.161  Sum_probs=64.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 004249          155 KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE--NIEALKM  232 (765)
Q Consensus       155 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~  232 (765)
                      +|++..++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++..|.  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            34555555556666666666666666666666666666666666666666666666666666666666666  5666666


Q ss_pred             HHHHHHHc-CCHHHHHHHHHHHHhcCCCC
Q 004249          233 GAKLYQKS-GQIESSVDILEDYLKGHPTE  260 (765)
Q Consensus       233 la~~~~~~-g~~~~A~~~~~~~~~~~p~~  260 (765)
                      +|.++... |++++|+..+++++...|.+
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            66666666 66666666666666655554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.34  E-value=3.9e-12  Score=105.66  Aligned_cols=106  Identities=13%  Similarity=0.117  Sum_probs=88.5

Q ss_pred             hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHH
Q 004249          121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPN--DFKLKFH  198 (765)
Q Consensus       121 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~  198 (765)
                      +|+++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.++++++...|.  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            57777788888888888888888888888888888888888888888888888888888888888888888  8888888


Q ss_pred             HHHHHHHh-CCHHHHHHHHHHHHHhCCCC
Q 004249          199 LASLYVEL-GNFQRAADVYRQMVQLCPEN  226 (765)
Q Consensus       199 la~~~~~~-g~~~~A~~~~~~al~~~p~~  226 (765)
                      +|.++... |++++|+.++++++...|.+
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            88888888 88888888888888887765

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.34  E-value=2.2e-12  Score=110.32  Aligned_cols=71  Identities=11%  Similarity=-0.080  Sum_probs=52.9

Q ss_pred             HcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHH----------HHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 004249          103 ALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTA----------KAMGCYWLAACYKQKDSSLWKLIFPWLIEQ  172 (765)
Q Consensus       103 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  172 (765)
                      +.+.|++|+..++++++.+|+++++|+.+|.++...++++          +|+..|+++++++|++..+|+.+|.+|..+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            4566888888888888888888888888888888887764          666666666666666666666666666655


Q ss_pred             C
Q 004249          173 G  173 (765)
Q Consensus       173 g  173 (765)
                      |
T Consensus        94 g   94 (158)
T 1zu2_A           94 A   94 (158)
T ss_dssp             H
T ss_pred             c
Confidence            4

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.33  E-value=4.5e-13  Score=142.38  Aligned_cols=138  Identities=14%  Similarity=0.077  Sum_probs=111.8

Q ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249          125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV  204 (765)
Q Consensus       125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  204 (765)
                      +.++..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++.+|+++.++..+|.++.
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   85 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   85 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34556677788888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhcCCCCCC
Q 004249          205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKL--YQKSGQIESSVDILE-----------DYLKGHPTEAD  262 (765)
Q Consensus       205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~~~~~~p~~~~  262 (765)
                      .+|++++|+..|+++++..|++..++..++.+  +...|++++|+..++           +++...|....
T Consensus        86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~  156 (477)
T 1wao_1           86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG  156 (477)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence            88999999999999888888888888888877  788888999998888           67776666543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.33  E-value=1.1e-12  Score=132.87  Aligned_cols=153  Identities=16%  Similarity=0.130  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 004249           92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE  171 (765)
Q Consensus        92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  171 (765)
                      ..+...|..++..|+|++|+..|++++...|.+..        +...|++.++...+.         ..++..+|.++..
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~~~~~  242 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAACLIK  242 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHHHHHH
Confidence            34445555556666666666666666655554331        111222222222211         1256666666666


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHH
Q 004249          172 QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLY-QKSGQIESSVDIL  250 (765)
Q Consensus       172 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~  250 (765)
                      +|++++|+..|++++..+|++..+++.+|.++...|++++|+..|+++++++|++..++..++.+. ...+..+++...|
T Consensus       243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~  322 (338)
T 2if4_A          243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY  322 (338)
T ss_dssp             TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777777776666666666666666676666667777777777666666666666666666663 3345556666666


Q ss_pred             HHHHhcCCCCC
Q 004249          251 EDYLKGHPTEA  261 (765)
Q Consensus       251 ~~~~~~~p~~~  261 (765)
                      .+++...|.++
T Consensus       323 ~~~l~~~p~~~  333 (338)
T 2if4_A          323 KGIFKGKDEGG  333 (338)
T ss_dssp             -----------
T ss_pred             HHhhCCCCCCC
Confidence            66666666544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=1.6e-11  Score=107.93  Aligned_cols=120  Identities=17%  Similarity=0.087  Sum_probs=113.5

Q ss_pred             hhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 004249          120 LEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD---SSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLK  196 (765)
Q Consensus       120 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  196 (765)
                      ..|.+...++.+|.++...|++++|+..|++++..+|++   ..++..+|.++...|++++|+..+++++..+|.++.++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            457788999999999999999999999999999999987   89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004249          197 FHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK  239 (765)
Q Consensus       197 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  239 (765)
                      +.+|.++...|++++|+.+|++++..+|++..++..++.+...
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999888877543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.32  E-value=9.8e-12  Score=106.55  Aligned_cols=98  Identities=13%  Similarity=0.080  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHH
Q 004249          127 SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND-------FKLKFHL  199 (765)
Q Consensus       127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l  199 (765)
                      .++.+|.++...|++++|+..|.+++..+|.++.++..+|.++...|++++|+.++++++...|.+       +.++..+
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444444444444444444444443333       3444444


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCC
Q 004249          200 ASLYVELGNFQRAADVYRQMVQLCP  224 (765)
Q Consensus       200 a~~~~~~g~~~~A~~~~~~al~~~p  224 (765)
                      |.++...|++++|+..|++++...|
T Consensus        86 a~~~~~~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           86 GNSYFKEEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCC
Confidence            4444444444444444444444444

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.32  E-value=1.4e-12  Score=138.48  Aligned_cols=134  Identities=19%  Similarity=0.093  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 004249           93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQ  172 (765)
Q Consensus        93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  172 (765)
                      .+...|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|+++.++..+|.++..+
T Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   87 (477)
T 1wao_1            8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   87 (477)
T ss_dssp             TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            34455677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHhCCHHHHHHHHH-----------HHHHhCCCC
Q 004249          173 GDTTWAMSCLSEAVKADPNDFKLKFHLASL--YVELGNFQRAADVYR-----------QMVQLCPEN  226 (765)
Q Consensus       173 g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~  226 (765)
                      |++++|+..|+++++.+|++..++..++.+  +...|++++|+..++           +++...|..
T Consensus        88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            999999999999999999999999999988  889999999999999           777777665

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.32  E-value=2.2e-12  Score=130.60  Aligned_cols=103  Identities=17%  Similarity=0.087  Sum_probs=60.7

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL-YV  204 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~  204 (765)
                      .+++.+|.++..+|++++|+..|++++.++|++..+++.+|.++..+|++++|+..|++++.++|++..++..++.+ ..
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999988 45


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHH
Q 004249          205 ELGNFQRAADVYRQMVQLCPENIE  228 (765)
Q Consensus       205 ~~g~~~~A~~~~~~al~~~p~~~~  228 (765)
                      ..+..+.+...|.+++...|.++.
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCCC
Confidence            567788999999999999987753

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.30  E-value=4.8e-12  Score=106.02  Aligned_cols=93  Identities=18%  Similarity=0.214  Sum_probs=59.5

Q ss_pred             cCCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 004249          138 LGNTAKAMGCYWLAACY---KQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAAD  214 (765)
Q Consensus       138 ~g~~~~A~~~~~~a~~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  214 (765)
                      +|++++|+..|+++++.   +|+++.++..+|.++...|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            46666666666666666   455666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhCCCCHHHH
Q 004249          215 VYRQMVQLCPENIEAL  230 (765)
Q Consensus       215 ~~~~al~~~p~~~~~~  230 (765)
                      .+++++...|+++.+.
T Consensus        83 ~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           83 LLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHhCCCcHHHH
Confidence            6666666666665544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.29  E-value=2.9e-11  Score=103.53  Aligned_cols=117  Identities=9%  Similarity=-0.054  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------HHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKD-------SSLW  162 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~  162 (765)
                      ....++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++...|.+       ..++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            455678889999999999999999999999999999999999999999999999999999999998876       8899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 004249          163 KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG  207 (765)
Q Consensus       163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  207 (765)
                      ..+|.++...|++++|+.+|++++...| ++.....++.+....+
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998 6888888887766543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.29  E-value=3.5e-11  Score=123.00  Aligned_cols=139  Identities=18%  Similarity=0.098  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI  170 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  170 (765)
                      ...+...|..++..|+|++|+..|++++...|..+                  +..........+|.+..++..+|.++.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466778888888888888888888887433211                  001122223344555556666666666


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004249          171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSV  247 (765)
Q Consensus       171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  247 (765)
                      .+|++++|+.+++++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...++.+++.
T Consensus       285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666665555554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.28  E-value=3.4e-12  Score=106.98  Aligned_cols=101  Identities=17%  Similarity=0.149  Sum_probs=89.3

Q ss_pred             HcCCHHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 004249          103 ALGRYEEAISVLHEVIRL---EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAM  179 (765)
Q Consensus       103 ~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~  179 (765)
                      ..|++++|+..|++++..   +|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   79999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHH
Q 004249          180 SCLSEAVKADPNDFKLKFHLASLY  203 (765)
Q Consensus       180 ~~~~~al~~~p~~~~~~~~la~~~  203 (765)
                      ..+++++...|+++.+......+.
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~ai~  105 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQAIL  105 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHH
Confidence            999999999999987754443333

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.27  E-value=1.2e-11  Score=105.66  Aligned_cols=91  Identities=18%  Similarity=0.117  Sum_probs=70.8

Q ss_pred             HcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 004249          137 ALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTT----------WAMSCLSEAVKADPNDFKLKFHLASLYVEL  206 (765)
Q Consensus       137 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~  206 (765)
                      +.+.+++|++.++++++++|+++.+|..+|.++...++++          +|+..|+++++++|++..+++.+|.+|..+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            4567888888888888888888888888888888887654          788888888888888888888888888776


Q ss_pred             C-----------CHHHHHHHHHHHHHhCCCCH
Q 004249          207 G-----------NFQRAADVYRQMVQLCPENI  227 (765)
Q Consensus       207 g-----------~~~~A~~~~~~al~~~p~~~  227 (765)
                      |           ++++|+.+|+++++++|++.
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            4           67777777777777777664

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.26  E-value=3.7e-11  Score=122.85  Aligned_cols=140  Identities=16%  Similarity=0.155  Sum_probs=120.7

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE  205 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  205 (765)
                      ..+..+|..++..|++++|+..|+++++..|..+                  +....+.....+|.+..++..+|.++..
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~~  285 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKLK  285 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4577888999999999999999999887644321                  1112444555778889999999999999


Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 004249          206 LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKH  285 (765)
Q Consensus       206 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~  285 (765)
                      +|++++|+.+++++++.+|+++.+++.+|.+|...|++++|+..|+++++.+|++..  ++..++.++...++++++...
T Consensus       286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~--~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA--IQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999866  778999999999999988754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.23  E-value=5.3e-10  Score=118.37  Aligned_cols=214  Identities=11%  Similarity=0.009  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH---------------HHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Q 004249          229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADF---------------GVIDLLASMLVQMNAYDRVLKHIELVDLVY  293 (765)
Q Consensus       229 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  293 (765)
                      .....|..+...|++++|++.|.++++..|.....               .++..+|.+|...|++++|++++.+++...
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            34455566666666666666666666665554331               124456666666666666666666665552


Q ss_pred             cCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhcc----CCC
Q 004249          294 YSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANA----GVH  369 (765)
Q Consensus       294 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~  369 (765)
                      +.....                                 .....+...++.++...|++++|+.++++++...    ..+
T Consensus        86 ~~~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  132 (434)
T 4b4t_Q           86 MQFAKS---------------------------------KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF  132 (434)
T ss_dssp             HTSCHH---------------------------------HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred             HHccch---------------------------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence            211000                                 0011234445555566666666666666665431    123


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcc
Q 004249          370 NDGCLHLKIAECSLALKEREKSIIYFYKALQIL------EDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSD  443 (765)
Q Consensus       370 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  443 (765)
                      ....++..+|.++...|++.+|...+++++...      |...+++..++.+|...|++++|..++++++...+...   
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---  209 (434)
T 4b4t_Q          133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY---  209 (434)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC---
T ss_pred             HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC---
Confidence            335566777777777777777777777776542      22345666777777777777777777777665433321   


Q ss_pred             cchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHh
Q 004249          444 KTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVC  480 (765)
Q Consensus       444 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  480 (765)
                        .+......++...|.++...|++++|...+..++.
T Consensus       210 --~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          210 --CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             --CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             --CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence              11122346677888999999999999999988875

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.18  E-value=1.6e-10  Score=103.28  Aligned_cols=131  Identities=17%  Similarity=0.174  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------H
Q 004249           92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELP------NSYHILGLVHDALGNTAKAMGCYWLAACYKQKD------S  159 (765)
Q Consensus        92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~------~  159 (765)
                      ..+...|..++..|++++|+..+++++...+...      .++..+|.++...|++++|+.++++++...+..      .
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            3445666777777777777777777776654322      356666666666666666666666666543221      2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004249          160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADP------NDFKLKFHLASLYVELGNFQRAADVYRQMVQL  222 (765)
Q Consensus       160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  222 (765)
                      .++..+|.++...|++++|+.++++++...+      ....++..+|.++...|++++|+..+++++++
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3455555555566666666665555554421      11233444555555555555555555555443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.18  E-value=1.1e-10  Score=104.22  Aligned_cols=131  Identities=16%  Similarity=0.093  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------H
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS------SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND------F  193 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~  193 (765)
                      .++..+|.++...|++++|+.++++++...+...      .++..+|.++...|++++|+.++++++...+..      .
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            4666777777777777777777777776543211      355666677777777777777776666553221      3


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004249          194 KLKFHLASLYVELGNFQRAADVYRQMVQLCPEN------IEALKMGAKLYQKSGQIESSVDILEDYLKG  256 (765)
Q Consensus       194 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  256 (765)
                      .++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|++++|+..++++++.
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            455566666666666666666666665542211      234445555555555555555555555443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.09  E-value=5.9e-10  Score=92.82  Aligned_cols=86  Identities=21%  Similarity=0.232  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004249          177 WAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKG  256 (765)
Q Consensus       177 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  256 (765)
                      +|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            35555566666666666666666666666666666666666666666666666666666666666666666666666655


Q ss_pred             CCCCCC
Q 004249          257 HPTEAD  262 (765)
Q Consensus       257 ~p~~~~  262 (765)
                      .|....
T Consensus        83 ~~~~~~   88 (115)
T 2kat_A           83 AQSRGD   88 (115)
T ss_dssp             HHHHTC
T ss_pred             cccccc
Confidence            554433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.04  E-value=6.5e-10  Score=91.85  Aligned_cols=98  Identities=13%  Similarity=0.051  Sum_probs=91.3

Q ss_pred             hHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCC------HHH
Q 004249          335 HAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDN------IDA  408 (765)
Q Consensus       335 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~  408 (765)
                      ++..+..+|.++...|++++|+..|++++..  .|.++.++..+|.++...|++++|+..|+++++++|++      ..+
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~   80 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence            4678899999999999999999999999999  89999999999999999999999999999999999999      889


Q ss_pred             HHHHHHHHHHcCCHHHHHHhcCCCCC
Q 004249          409 RLTLASLLLEDAKDEEAISLLTPPMS  434 (765)
Q Consensus       409 ~~~l~~~~~~~g~~~~A~~~~~~~~~  434 (765)
                      ++.++.++...|++++|+..+++...
T Consensus        81 ~~~~~~~~~~~~~~~~a~~~~~~~~~  106 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIPVVEVDELPE  106 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCSSSSSSCSS
T ss_pred             HHHHHHHHHHHHhHhhhHhHHHHhHH
Confidence            99999999999999988888876544

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.04  E-value=1.4e-09  Score=90.51  Aligned_cols=82  Identities=12%  Similarity=-0.038  Sum_probs=53.3

Q ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 004249          143 KAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQL  222 (765)
Q Consensus       143 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  222 (765)
                      +|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            35566666666666666666666666666666666666666666666666666666666666666666666666666665


Q ss_pred             CC
Q 004249          223 CP  224 (765)
Q Consensus       223 ~p  224 (765)
                      .|
T Consensus        83 ~~   84 (115)
T 2kat_A           83 AQ   84 (115)
T ss_dssp             HH
T ss_pred             cc
Confidence            55

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.03  E-value=2.1e-10  Score=94.86  Aligned_cols=91  Identities=16%  Similarity=0.102  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 004249          160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN------IEALKMG  233 (765)
Q Consensus       160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l  233 (765)
                      .++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|++      ..++..+
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~   84 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL   84 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence            4455555555555555555555555555555555555555555555555555555555555555555      5555555


Q ss_pred             HHHHHHcCCHHHHHHHH
Q 004249          234 AKLYQKSGQIESSVDIL  250 (765)
Q Consensus       234 a~~~~~~g~~~~A~~~~  250 (765)
                      |.++...|+++.|+..+
T Consensus        85 ~~~~~~~~~~~~a~~~~  101 (111)
T 2l6j_A           85 ELAQGAVGSVQIPVVEV  101 (111)
T ss_dssp             HHHHHHHHCCCCCSSSS
T ss_pred             HHHHHHHHhHhhhHhHH
Confidence            55555555555544433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.00  E-value=2.4e-09  Score=84.63  Aligned_cols=77  Identities=22%  Similarity=0.251  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 004249          127 SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLY  203 (765)
Q Consensus       127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  203 (765)
                      +++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444444444444444444444444444444444443333333

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.99  E-value=4.2e-09  Score=83.16  Aligned_cols=85  Identities=26%  Similarity=0.414  Sum_probs=70.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004249          157 KDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKL  236 (765)
Q Consensus       157 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  236 (765)
                      .+..++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            34567788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcC
Q 004249          237 YQKSG  241 (765)
Q Consensus       237 ~~~~g  241 (765)
                      +...|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            77654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.93  E-value=3.9e-09  Score=85.03  Aligned_cols=74  Identities=20%  Similarity=0.331  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249          189 DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD  262 (765)
Q Consensus       189 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  262 (765)
                      +|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..|+++++..|....
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~   76 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT   76 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence            35555555555555555555555555555555555555555555555555555555555555555555444333

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.90  E-value=3.9e-08  Score=96.54  Aligned_cols=74  Identities=12%  Similarity=-0.008  Sum_probs=49.9

Q ss_pred             hcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 004249          187 KADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA  261 (765)
Q Consensus       187 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  261 (765)
                      ..+|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++++.++|...
T Consensus       271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            445666677766766666667777777777777777653 45566667777777777777777777777766653

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.89  E-value=6.1e-09  Score=83.86  Aligned_cols=69  Identities=12%  Similarity=0.032  Sum_probs=40.1

Q ss_pred             hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004249          121 EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKAD  189 (765)
Q Consensus       121 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  189 (765)
                      +|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++.+.
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            455555666666666666666666666666666666655566666666666666666666666655543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.88  E-value=2.6e-09  Score=86.08  Aligned_cols=90  Identities=18%  Similarity=0.171  Sum_probs=66.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCch-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 004249           95 LGDASLHYALGRYEEAISVLHEVIRLEEELPN-SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG  173 (765)
Q Consensus        95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  173 (765)
                      +.+|..++..|++++|+..|++++..+|.++. +++.+|.++...|++++|+..|++++.++|++..++..        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            45677777888888888888888888888777 88888888888888888888888888888877776633        4


Q ss_pred             CHHHHHHHHHHHHhcCCCC
Q 004249          174 DTTWAMSCLSEAVKADPND  192 (765)
Q Consensus       174 ~~~~A~~~~~~al~~~p~~  192 (765)
                      .+.+++..|++++..+|++
T Consensus        76 ~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHHhccCccc
Confidence            5566666766666655543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.85  E-value=4.5e-08  Score=84.03  Aligned_cols=119  Identities=17%  Similarity=0.085  Sum_probs=84.7

Q ss_pred             CCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 004249          105 GRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE----QGDTTWAMS  180 (765)
Q Consensus       105 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~  180 (765)
                      +++++|+..|+++.+..  ++.+.  +|.+|...+.+++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.
T Consensus         9 ~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            45777777887777665  34444  777777777777788888877765  567777777777777    777777887


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004249          181 CLSEAVKADPNDFKLKFHLASLYVE----LGNFQRAADVYRQMVQLCPENIEALKMG  233 (765)
Q Consensus       181 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l  233 (765)
                      +|+++.+.  .++.+++.+|.+|..    .+++++|+.+|+++.+.  .++.+...+
T Consensus        83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l  135 (138)
T 1klx_A           83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGIL  135 (138)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence            77777764  567777777777777    77777777777777765  334444443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.83  E-value=7.5e-09  Score=83.29  Aligned_cols=89  Identities=19%  Similarity=0.326  Sum_probs=48.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004249          164 LIFPWLIEQGDTTWAMSCLSEAVKADPNDFK-LKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ  242 (765)
Q Consensus       164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  242 (765)
                      ..|.++...|++++|+..|+++++.+|.++. +++.+|.++...|++++|+..|+++++.+|++..++..        +.
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~   76 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM   76 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence            3455555555555555555555555555555 55555555555555555555555555555555544422        34


Q ss_pred             HHHHHHHHHHHHhcCCCC
Q 004249          243 IESSVDILEDYLKGHPTE  260 (765)
Q Consensus       243 ~~~A~~~~~~~~~~~p~~  260 (765)
                      +.+++..|+++...+|++
T Consensus        77 ~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           77 VMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHhccCccc
Confidence            445555555555544443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.78  E-value=2.2e-08  Score=105.16  Aligned_cols=125  Identities=14%  Similarity=0.044  Sum_probs=65.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhh-----CCCc---hHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CCCCH---
Q 004249           96 GDASLHYALGRYEEAISVLHEVIRLE-----EELP---NSYHILGLVHDALGNTAKAMGCYWLAACY-----KQKDS---  159 (765)
Q Consensus        96 ~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~p~~~---  159 (765)
                      ..+..+..+|+|++|+.++++++...     |+++   .++..+|.+|..+|+|++|+.++++++.+     .|+++   
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a  393 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG  393 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            34444555666666666666666542     2222   44555566666666666666666555543     23333   


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004249          160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKA-----DPNDF---KLKFHLASLYVELGNFQRAADVYRQMV  220 (765)
Q Consensus       160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al  220 (765)
                      ..+.+||.+|..+|++++|+.+|++++.+     .|+++   +....++.++..++.+++|...|.++.
T Consensus       394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~  462 (490)
T 3n71_A          394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR  462 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555555543     33333   223445555555555555555555543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.75  E-value=1.9e-07  Score=91.69  Aligned_cols=70  Identities=7%  Similarity=-0.089  Sum_probs=49.0

Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          220 VQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       220 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                      +...|.++.++..++..+...|++++|+..+++++.++|+   +..+..+|.++...|++++|++.|.+++.+
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS---WLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            3456677777777777777677777777777777777653   335567777777777777777777777777

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.74  E-value=1.7e-07  Score=80.42  Aligned_cols=111  Identities=15%  Similarity=0.045  Sum_probs=93.7

Q ss_pred             CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHH
Q 004249          139 GNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE----LGNFQRAAD  214 (765)
Q Consensus       139 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~  214 (765)
                      +++++|+.+|+++.+.....  +.  +|.+|...+..++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            46788999999998876333  33  888888888888899999999875  678899999999988    889999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Q 004249          215 VYRQMVQLCPENIEALKMGAKLYQK----SGQIESSVDILEDYLKGH  257 (765)
Q Consensus       215 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~  257 (765)
                      +|+++.+.  .++.+.+.+|.+|..    .+++++|+.+|+++.+..
T Consensus        83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            99999876  678889999999988    889999999999988764

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.72  E-value=2.5e-07  Score=86.75  Aligned_cols=174  Identities=14%  Similarity=0.084  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHhhCCCchHHHHHHHHHHHc---------------------CCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249          108 EEAISVLHEVIRLEEELPNSYHILGLVHDAL---------------------GNTAKAMGCYWLAACYKQKDSSLWKLIF  166 (765)
Q Consensus       108 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---------------------g~~~~A~~~~~~a~~~~p~~~~~~~~la  166 (765)
                      .-.+.+++-++..+|++.......|..|..-                     .++..|.+.|.++...        -..+
T Consensus        49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y--------~~ra  120 (301)
T 3u64_A           49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY--------ALSS  120 (301)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred             cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH--------HHHH
Confidence            3456677888889999987666555544321                     1233455555554321        1111


Q ss_pred             HHHHHcCCHHHHHH-----HHHHH-HhcCCCCHHHHHHHHHHHHH---h--C------CHHHHHHHHHHHHHhCCC--CH
Q 004249          167 PWLIEQGDTTWAMS-----CLSEA-VKADPNDFKLKFHLASLYVE---L--G------NFQRAADVYRQMVQLCPE--NI  227 (765)
Q Consensus       167 ~~~~~~g~~~~A~~-----~~~~a-l~~~p~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~p~--~~  227 (765)
                       +......+.+++.     -+..+ ...+|+++++++..|.+...   .  |      ....|...++++++++|+  +.
T Consensus       121 -L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~G  199 (301)
T 3u64_A          121 -LETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEG  199 (301)
T ss_dssp             -HHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             -HHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccC
Confidence             1111122222221     12222 33467778777777766543   1  2      256788888888888888  56


Q ss_pred             HHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHH
Q 004249          228 EALKMGAKLYQKS-----GQIESSVDILEDYLKGHPTE-ADFGVIDLLASMLVQM-NAYDRVLKHIELVDLV  292 (765)
Q Consensus       228 ~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~p~~-~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~  292 (765)
                      .++..+|.+|...     |+.++|..+|+++++++|+. ..  .++.+|..++.. |++++|...+++++..
T Consensus       200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id--~~v~YA~~l~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPD--HHITYADALCIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSH--HHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCch--HHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence            6888888888884     88888888888888888864 55  566888888774 8888888888888887

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.70  E-value=7.4e-07  Score=83.55  Aligned_cols=109  Identities=10%  Similarity=-0.008  Sum_probs=92.2

Q ss_pred             cccCCCChHHHHHHHHHHHH---c--cc------cHHHHHHHHHHHHhccCCCC--CHHHHHHHHHHHHHh-----ccHH
Q 004249          328 HWENVSDHAESINEIADLFK---N--RE------LYSTALKYYHMLEANAGVHN--DGCLHLKIAECSLAL-----KERE  389 (765)
Q Consensus       328 ~~~~~~~~~~~~~~la~~~~---~--~g------~~~~A~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~~~  389 (765)
                      +....+.+++.++..|.+..   .  .|      ....|...+++++++  +|+  +..+|..+|.+|...     |+.+
T Consensus       144 l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~e  221 (301)
T 3u64_A          144 LSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGME  221 (301)
T ss_dssp             HTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHH
T ss_pred             HHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHH
Confidence            33334777887777775542   1  22      468899999999999  898  677999999999995     9999


Q ss_pred             HHHHHHHHHHHHcCCC-HHHHHHHHHHHHH-cCCHHHHHHhcCCCCCcccc
Q 004249          390 KSIIYFYKALQILEDN-IDARLTLASLLLE-DAKDEEAISLLTPPMSLENK  438 (765)
Q Consensus       390 ~A~~~~~~al~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~  438 (765)
                      +|.++|+++++++|+. ..+++..|..+.. .|++++|..++++++..+|.
T Consensus       222 kA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          222 KAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            9999999999999975 9999999999988 49999999999999998777

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.63  E-value=9.8e-08  Score=100.25  Aligned_cols=124  Identities=11%  Similarity=0.052  Sum_probs=69.8

Q ss_pred             HHHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCC---HHHHHH
Q 004249          169 LIEQGDTTWAMSCLSEAVKA-----DPNDF---KLKFHLASLYVELGNFQRAADVYRQMVQL-----CPEN---IEALKM  232 (765)
Q Consensus       169 ~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~  232 (765)
                      +..+|++++|+..+++++.+     .|+++   .++.++|.+|..+|+|++|+.++++++.+     .|++   ...+.+
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            34555666666666555543     23333   34555666666666666666666665543     2333   234556


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          233 GAKLYQKSGQIESSVDILEDYLKG-----HPTEAD-FGVIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       233 la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                      +|.+|..+|++++|+.++++++.+     .|+++. ......++.++..++.+++|...|.++.+.
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666543     344433 223446666666777777777777766655

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.58  E-value=1.5e-06  Score=92.15  Aligned_cols=167  Identities=10%  Similarity=0.002  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcc---------HHHHHHHHHHHHHHhcCCCCcc
Q 004249          230 LKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNA---------YDRVLKHIELVDLVYYSGKELL  300 (765)
Q Consensus       230 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~~~  300 (765)
                      +..+...+.+.|++++|+.+|+++.+..- .++...|+.+..++...+.         .++|..+|+++...   +-..+
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv-~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~---G~~Pd  104 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGV-QLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD---KVVPN  104 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh---CCCCC
Confidence            44555666777777777777777765431 1223345555555555443         45666666666544   12234


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 004249          301 LALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAE  380 (765)
Q Consensus       301 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~  380 (765)
                      ...+..+...+.+.|++++|..+|+++.......+...|..+...+.+.|+.++|..+|+++...+..| +...|..+-.
T Consensus       105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~  183 (501)
T 4g26_A          105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLK  183 (501)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHH
Confidence            445555566666666666666666666544444455666666666666666666666666666554333 4455666666


Q ss_pred             HHHHhccHHHHHHHHHHHHHH
Q 004249          381 CSLALKEREKSIIYFYKALQI  401 (765)
Q Consensus       381 ~~~~~g~~~~A~~~~~~al~~  401 (765)
                      ++.+.|+.++|.+.++++.+.
T Consensus       184 ~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          184 VSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhhCCCHHHHHHHHHHHHHh
Confidence            666666666666666666554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.57  E-value=2.4e-06  Score=90.61  Aligned_cols=159  Identities=9%  Similarity=-0.045  Sum_probs=75.4

Q ss_pred             HHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHcc---------ccHHHHHHHHHHHHhccCCCCCHHHHHHHH
Q 004249          309 ICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNR---------ELYSTALKYYHMLEANAGVHNDGCLHLKIA  379 (765)
Q Consensus       309 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~la  379 (765)
                      ..+.+.|+.++|+.+|+++.......+...|..+..++...         +..++|..+|+++...+..| +..+|..+.
T Consensus        34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d~~tyn~lI  112 (501)
T 4g26_A           34 DMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-NEATFTNGA  112 (501)
T ss_dssp             HHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-CHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-CHHHHHHHH
Confidence            33444445555555444444333333344444444433322         23455555555555443222 344555555


Q ss_pred             HHHHHhccHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHH
Q 004249          380 ECSLALKEREKSIIYFYKALQIL-EDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKL  458 (765)
Q Consensus       380 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (765)
                      ..+.+.|++++|...|+++.+.. +.+..++..+...|.+.|+.++|.++++++.+....+           +...+..+
T Consensus       113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-----------d~~ty~~L  181 (501)
T 4g26_A          113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-----------EEPELAAL  181 (501)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-----------CHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----------CHHHHHHH
Confidence            55555555555555555554432 2234455555555555555555555555443322111           12444555


Q ss_pred             HHHHHhcchhHHHHHhhHHHH
Q 004249          459 CRIYKAKGMIEGFVDMLLPLV  479 (765)
Q Consensus       459 a~~~~~~~~~~~A~~~~~~~~  479 (765)
                      ...+.+.|+.++|.+.+.++-
T Consensus       182 i~~~~~~g~~d~A~~ll~~Mr  202 (501)
T 4g26_A          182 LKVSMDTKNADKVYKTLQRLR  202 (501)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhCCCHHHHHHHHHHHH
Confidence            555555555555555555544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.55  E-value=8.4e-07  Score=69.28  Aligned_cols=74  Identities=19%  Similarity=0.063  Sum_probs=51.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 004249          189 DPNDFKLKFHLASLYVELGN---FQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD  262 (765)
Q Consensus       189 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  262 (765)
                      +|+++..+..+|.+++..++   .++|...++++++.+|+++.+++.+|..++..|+|++|+..++++++.+|.++.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            46667777777777765554   577777777777777777777777777777777777777777777777776443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.54  E-value=6.4e-07  Score=69.95  Aligned_cols=70  Identities=14%  Similarity=-0.011  Sum_probs=36.5

Q ss_pred             CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 004249          156 QKDSSLWKLIFPWLIEQGD---TTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPE  225 (765)
Q Consensus       156 p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  225 (765)
                      |+++..+..+|.+++..++   .++|...+++++..+|+++.+++.+|..++..|+|++|+.+++++++.+|.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4455555555555543333   355555555555555555555555555555555555555555555555554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.44  E-value=1.3e-06  Score=73.67  Aligned_cols=88  Identities=5%  Similarity=-0.136  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHhhCCCchHHHHHHHHHHHcC---CHHHHHHHHHHHhccC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249          110 AISVLHEVIRLEEELPNSYHILGLVHDALG---NTAKAMGCYWLAACYK-Q-KDSSLWKLIFPWLIEQGDTTWAMSCLSE  184 (765)
Q Consensus       110 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~  184 (765)
                      +.+.|.+.+..+|.+.++.+.+|+++.+.+   +.++++..++.+++.+ | .+.++++.+|..+++.|+|++|..++++
T Consensus        17 ~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~   96 (152)
T 1pc2_A           17 FEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG   96 (152)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            334444444555555566666666666655   4446666666666555 4 3455566666666666666666666666


Q ss_pred             HHhcCCCCHHHHH
Q 004249          185 AVKADPNDFKLKF  197 (765)
Q Consensus       185 al~~~p~~~~~~~  197 (765)
                      +++.+|++..+..
T Consensus        97 lL~ieP~n~QA~~  109 (152)
T 1pc2_A           97 LLQTEPQNNQAKE  109 (152)
T ss_dssp             HHHHCTTCHHHHH
T ss_pred             HHhcCCCCHHHHH
Confidence            6666665555443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.42  E-value=2.1e-06  Score=72.43  Aligned_cols=93  Identities=17%  Similarity=0.082  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHhCCHHHHHHH
Q 004249          141 TAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG---DTTWAMSCLSEAVKAD-P-NDFKLKFHLASLYVELGNFQRAADV  215 (765)
Q Consensus       141 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~  215 (765)
                      ...+.+.|.+.+..+|.+.++.+.+|.++.+.+   +.++++..++.+++.+ | ...++++.+|..+.+.|+|++|..+
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            345666677777777777888888888888877   5568888888888877 5 4577888888888888888888888


Q ss_pred             HHHHHHhCCCCHHHHHHH
Q 004249          216 YRQMVQLCPENIEALKMG  233 (765)
Q Consensus       216 ~~~al~~~p~~~~~~~~l  233 (765)
                      ++++++..|++..+....
T Consensus        94 ~~~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           94 VRGLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHH
Confidence            888888888877665443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.26  E-value=2.4e-06  Score=88.11  Aligned_cols=97  Identities=12%  Similarity=0.049  Sum_probs=78.1

Q ss_pred             hhhhHHHHHHHHHHHHhh-----CCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHH
Q 004249          615 MISHHQDAAREYLEAYKL-----LPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIAR  689 (765)
Q Consensus       615 ~~~~~~~A~~~~~~a~~~-----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~  689 (765)
                      ..|+|++|+..|++++.+     .|++|.+                                         ..++.|+|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~-----------------------------------------a~~~~nLa~  348 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYM-----------------------------------------LHMMYQAMG  348 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHH-----------------------------------------HHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHH-----------------------------------------HHHHHHHHH
Confidence            357899999999998874     3554443                                         256899999


Q ss_pred             HHHHhchHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC
Q 004249          690 AYHHVGLVSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKSGAVDLARQVLRDHCTF  765 (765)
Q Consensus       690 ~~~~~g~~~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~g~~~~A~~~l~k~l~~  765 (765)
                      +|..+|++++|+.+|+++|++..+.     +|        ..-......++|||.+|..+|++++|+.+++|++.|
T Consensus       349 ~y~~~g~~~eA~~~~~~aL~i~~~~-----lG--------~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          349 VCLYMQDWEGALKYGQKIIKPYSKH-----YP--------VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHH-----SC--------SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHHH-----cC--------CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            9999999999999999999997642     11        122244778999999999999999999999998754

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.23  E-value=8.4e-06  Score=65.57  Aligned_cols=67  Identities=10%  Similarity=0.042  Sum_probs=28.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhC-------CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 004249           95 LGDASLHYALGRYEEAISVLHEVIRLEE-------ELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSL  161 (765)
Q Consensus        95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~  161 (765)
                      +..|..++..|+|..|+..|+++++..+       ..+.++..+|.+++++|+++.|+..+++++.++|++..+
T Consensus         9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            3444444444444444444444444321       112333444444444444444444444444444444333

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.22  E-value=1.3e-05  Score=64.39  Aligned_cols=72  Identities=13%  Similarity=0.044  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 004249          162 WKLIFPWLIEQGDTTWAMSCLSEAVKAD-------PNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMG  233 (765)
Q Consensus       162 ~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  233 (765)
                      ++.+|..++..|+|..|+..|+.++...       +..+.++..+|.++.++|+++.|+..+++++++.|++..+..++
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~   86 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence            3444444444444444444444444431       12344455555555555555555555555555555555444443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.19  E-value=6.2e-06  Score=85.06  Aligned_cols=92  Identities=10%  Similarity=0.082  Sum_probs=54.7

Q ss_pred             cCCHHHHHHHHHHHhcc-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHH
Q 004249          138 LGNTAKAMGCYWLAACY-----KQKDS---SLWKLIFPWLIEQGDTTWAMSCLSEAVKA-----DPNDF---KLKFHLAS  201 (765)
Q Consensus       138 ~g~~~~A~~~~~~a~~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~  201 (765)
                      .|+|++|+..+++++++     .|+++   ..+..+|.+|..+|+|++|+.++++++.+     .|+++   ..+.++|.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            45666666666666543     34444   34555666666666666666666666654     33333   34566666


Q ss_pred             HHHHhCCHHHHHHHHHHHHHh-----CCCCHHH
Q 004249          202 LYVELGNFQRAADVYRQMVQL-----CPENIEA  229 (765)
Q Consensus       202 ~~~~~g~~~~A~~~~~~al~~-----~p~~~~~  229 (765)
                      +|..+|++++|+..|++++++     .|+++.+
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            666777777776666666653     4555443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.14  E-value=5.3e-06  Score=85.84  Aligned_cols=107  Identities=9%  Similarity=-0.026  Sum_probs=81.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHhcc-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH---HHH
Q 004249          133 LVHDALGNTAKAMGCYWLAACY-----KQKDS---SLWKLIFPWLIEQGDTTWAMSCLSEAVKA-----DPNDF---KLK  196 (765)
Q Consensus       133 ~~~~~~g~~~~A~~~~~~a~~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~  196 (765)
                      .-+..+|++++|+..+++++.+     .|+++   ..+..+|.+|..+|+|++|+.++++++.+     .|+++   ..+
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            3455778999999999998865     35555   56777899999999999999999998875     34554   457


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHH
Q 004249          197 FHLASLYVELGNFQRAADVYRQMVQL-----CPENIEA---LKMGAKLYQK  239 (765)
Q Consensus       197 ~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~---~~~la~~~~~  239 (765)
                      .++|.+|..+|++++|+..|++++++     .|+++.+   +..++.+...
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            88999999999999999999998864     5666543   4556655543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.96  E-value=2.3e-05  Score=81.04  Aligned_cols=108  Identities=11%  Similarity=-0.000  Sum_probs=86.0

Q ss_pred             HHHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCC---HHHHHH
Q 004249          169 LIEQGDTTWAMSCLSEAVKA-----DPNDF---KLKFHLASLYVELGNFQRAADVYRQMVQL-----CPEN---IEALKM  232 (765)
Q Consensus       169 ~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~  232 (765)
                      +..+|++++|+..+++++.+     .|+++   .++.++|.+|..+|+|++|+.++++++..     .|++   ...+.+
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            55789999999999999975     45554   56889999999999999999999999874     3455   456889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc-----CCCCCCH-HHHHHHHHHHHHh
Q 004249          233 GAKLYQKSGQIESSVDILEDYLKG-----HPTEADF-GVIDLLASMLVQM  276 (765)
Q Consensus       233 la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~-~~~~~l~~~~~~~  276 (765)
                      +|.+|..+|++++|+.++++++++     .|+++.. .++..++.+...+
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            999999999999999999999874     5666552 2445677666554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.90  E-value=0.00013  Score=59.04  Aligned_cols=91  Identities=3%  Similarity=-0.158  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHH---HHHHHHHHhccC-C-CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 004249          108 EEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAK---AMGCYWLAACYK-Q-KDSSLWKLIFPWLIEQGDTTWAMSCL  182 (765)
Q Consensus       108 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~a~~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~  182 (765)
                      ..+...|.+.+..++.+..+.+.+|+++.+..+...   ++..++..+..+ | ...+.++.+|..+++.|+|.+|..++
T Consensus        18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~   97 (126)
T 1nzn_A           18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV   97 (126)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            344444555555555556666666666666655544   666666666554 3 23455566666666666666666666


Q ss_pred             HHHHhcCCCCHHHHHH
Q 004249          183 SEAVKADPNDFKLKFH  198 (765)
Q Consensus       183 ~~al~~~p~~~~~~~~  198 (765)
                      +.+++..|++..+...
T Consensus        98 ~~lL~~eP~n~QA~~L  113 (126)
T 1nzn_A           98 RGLLQTEPQNNQAKEL  113 (126)
T ss_dssp             HHHHHHCTTCHHHHHH
T ss_pred             HHHHHhCCCCHHHHHH
Confidence            6666666666555433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.86  E-value=0.00017  Score=58.40  Aligned_cols=94  Identities=16%  Similarity=0.051  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHhCCHHHHHHH
Q 004249          141 TAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTW---AMSCLSEAVKAD-P-NDFKLKFHLASLYVELGNFQRAADV  215 (765)
Q Consensus       141 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~  215 (765)
                      ...+...|.+....++....+.+.+|.++....+...   ++.+++..+..+ | ...++++.+|..+++.|+|++|..+
T Consensus        17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~   96 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   96 (126)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            4455666666666677788888888888888777665   888888888766 4 4567888888888888888888888


Q ss_pred             HHHHHHhCCCCHHHHHHHH
Q 004249          216 YRQMVQLCPENIEALKMGA  234 (765)
Q Consensus       216 ~~~al~~~p~~~~~~~~la  234 (765)
                      ++.+++..|++..+.....
T Consensus        97 ~~~lL~~eP~n~QA~~Lk~  115 (126)
T 1nzn_A           97 VRGLLQTEPQNNQAKELER  115 (126)
T ss_dssp             HHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHH
Confidence            8888888888877655443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.79  E-value=0.00022  Score=60.38  Aligned_cols=133  Identities=16%  Similarity=0.073  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc---------hHHHHHHHHHHHcCCHHHHHHHHHHHhccC---CCCH
Q 004249           92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELP---------NSYHILGLVHDALGNTAKAMGCYWLAACYK---QKDS  159 (765)
Q Consensus        92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---p~~~  159 (765)
                      ..++.....++..|.|+.|+-+...++....+++         .++..+|.+++..|+|..|...|+++++..   +...
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4567888899999999999999999877654433         378999999999999999999999997653   2222


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004249          160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLY  237 (765)
Q Consensus       160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  237 (765)
                      .....++.    ......       ... .+.+.++.+.++.|+...|++.+|+..++.+-.. ...+.+...||.+|
T Consensus       101 s~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          101 KVRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY  165 (167)
T ss_dssp             ---------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred             Cccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence            22111110    000000       011 1345677888888888888888888887664221 23466677777665

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.64  E-value=0.0011  Score=54.76  Aligned_cols=109  Identities=14%  Similarity=0.070  Sum_probs=77.0

Q ss_pred             hhCCCchHHHHHHHHHHHcCCH------HHHHHHHHHHhccCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249          120 LEEELPNSYHILGLVHDALGNT------AKAMGCYWLAACYKQKD--------SSLWKLIFPWLIEQGDTTWAMSCLSEA  185 (765)
Q Consensus       120 ~~p~~~~~~~~l~~~~~~~g~~------~~A~~~~~~a~~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a  185 (765)
                      ..|++++.|..........|+.      ++-+..|++++..-|..        ...|...|.. ...++.++|...|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            4677888888887777777887      77778888887655432        1334444533 4557788888888888


Q ss_pred             HhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 004249          186 VKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEA  229 (765)
Q Consensus       186 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  229 (765)
                      +......+.+|...|..-.++|+...|...+.+++...|.....
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence            77766667777777887788888888888888888877776553

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.63  E-value=0.00022  Score=60.45  Aligned_cols=45  Identities=24%  Similarity=0.361  Sum_probs=35.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHH
Q 004249          405 NIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIY  462 (765)
Q Consensus       405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  462 (765)
                      +.+..+.++.|+.+.|++++|+..++..-.....             +++.+.+|++|
T Consensus       121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt-------------~kvnm~LakLy  165 (167)
T 3ffl_A          121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRT-------------PKINMLLANLY  165 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCC-------------HHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcC-------------HHHHHHHHHHh
Confidence            3478899999999999999999999876554433             36777777765

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.50  E-value=0.0013  Score=54.25  Aligned_cols=104  Identities=15%  Similarity=0.188  Sum_probs=53.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004249          155 KQKDSSLWKLIFPWLIEQGDT------TWAMSCLSEAVKADPND--------FKLKFHLASLYVELGNFQRAADVYRQMV  220 (765)
Q Consensus       155 ~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al  220 (765)
                      .|.+++.|..........|+.      +.-++.|++++..-|..        ...|...|.. ...++.++|...|+.++
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence            455666666555555555555      55555666665544422        1222333322 33355555555555555


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249          221 QLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPT  259 (765)
Q Consensus       221 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  259 (765)
                      ..+...+.+|...|..-.++|+...|...+.+++...|.
T Consensus        88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            554444555555555555555555555555555555544

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=97.26  E-value=0.3  Score=52.49  Aligned_cols=365  Identities=9%  Similarity=-0.032  Sum_probs=183.9

Q ss_pred             HHHHHHHhhCCCchHHHHHHHH---HHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004249          113 VLHEVIRLEEELPNSYHILGLV---HDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKAD  189 (765)
Q Consensus       113 ~~~~~l~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  189 (765)
                      -+...+...|+.+..-......   +.+.+++..-+.++..    .|.+....+..+......|+..+|.....++....
T Consensus        57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~  132 (618)
T 1qsa_A           57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG  132 (618)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence            3444556677777544333332   3345566655554432    37777777777888888888877777777766554


Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH-----------HHHHH-cCCHHHHHHHHHHHHhcC
Q 004249          190 PNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGA-----------KLYQK-SGQIESSVDILEDYLKGH  257 (765)
Q Consensus       190 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-----------~~~~~-~g~~~~A~~~~~~~~~~~  257 (765)
                      ...+.....+...+...|........-+--+.+..++......++           ..... ..+..........   ..
T Consensus       133 ~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~---~~  209 (618)
T 1qsa_A          133 KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART---TG  209 (618)
T ss_dssp             SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH---SC
T ss_pred             CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc---cC
Confidence            444444444444444333322221111111111111111111111           11110 1111111111110   11


Q ss_pred             CCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHH
Q 004249          258 PTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAE  337 (765)
Q Consensus       258 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  337 (765)
                      +... ......++.......+.+.|...+........-+..........++......+...++...+....... .+ ..
T Consensus       210 ~~~~-~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~-~~-~~  286 (618)
T 1qsa_A          210 ATDF-TRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-QS-TS  286 (618)
T ss_dssp             CCHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-CC-HH
T ss_pred             CChh-hHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC-CC-hH
Confidence            1111 111223444445556888899888877654211111112222233333334443556677776654332 22 22


Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004249          338 SINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLL  417 (765)
Q Consensus       338 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  417 (765)
                      .....+...+..|+++.|..+|..+...  ....+...+.+|.++...|+.++|...|+++..  +.+.  +-.++.  .
T Consensus       287 ~~e~~~r~Alr~~d~~~a~~~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~~f--Yg~lAa--~  358 (618)
T 1qsa_A          287 LIERRVRMALGTGDRRGLNTWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QRGF--YPMVAA--Q  358 (618)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSH--HHHHHH--H
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCCh--HHHHHH--H
Confidence            3334444455679999999999876554  345678889999999999999999999999875  3322  222222  2


Q ss_pred             HcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHH
Q 004249          418 EDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLL  497 (765)
Q Consensus       418 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~  497 (765)
                      ++|..          ....+....+... ... ........+..+...|....|...+...+..        .+   ...
T Consensus       359 ~Lg~~----------~~~~~~~~~~~~~-~~~-~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~--------~~---~~~  415 (618)
T 1qsa_A          359 RIGEE----------YELKIDKAPQNVD-SAL-TQGPEMARVRELMYWNLDNTARSEWANLVKS--------KS---KTE  415 (618)
T ss_dssp             HTTCC----------CCCCCCCCCSCCC-CHH-HHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CC---HHH
T ss_pred             HcCCC----------CCCCCCCCChhHH-hhh-ccChHHHHHHHHHHCCChhhHHHHHHHHHhc--------CC---HHH
Confidence            33421          1111100000000 000 1112346677788899999988777666532        11   233


Q ss_pred             HHHHHHHHHhhhcHHHHHHHH
Q 004249          498 IIDLCKTLASLHRYEDAIKII  518 (765)
Q Consensus       498 ~~~l~~~~~~~~~~~~A~~~~  518 (765)
                      ...++.+....|.++.++...
T Consensus       416 ~~~la~~a~~~~~~~~~v~~~  436 (618)
T 1qsa_A          416 QAQLARYAFNNQWWDLSVQAT  436 (618)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCChHHHHHHH
Confidence            345666677788887776544

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.12  E-value=0.52  Score=52.57  Aligned_cols=189  Identities=11%  Similarity=0.046  Sum_probs=103.8

Q ss_pred             HHhcCChhHHHHHHHhhcccC--CCC--hHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCC--C---CH----HHHHH
Q 004249          311 HIQLGNTDKAEILLTAIHWEN--VSD--HAESINEIADLFKNRELYSTALKYYHMLEANAGVH--N---DG----CLHLK  377 (765)
Q Consensus       311 ~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~---~~----~~~~~  377 (765)
                      .+..|+.++++..+...+...  ...  ...+.+.+|.++...++  +++.++...+... ..  .   ..    .+-..
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~-~~~~~~~~~~~ir~gAaLG  460 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVEN-SGTSGDEDVDVLLHGASLG  460 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHH-SSCCSCHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCc-cccccccccHHHHHHHHHH
Confidence            456788889999999877521  011  23466777777766654  6888887777542 10  0   11    24456


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHH
Q 004249          378 IAECSLALKEREKSIIYFYKALQILEDNI--DARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIK  455 (765)
Q Consensus       378 la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (765)
                      +|.++...++ +++...+..++..+....  .+-+.+|.++.-.|+.+-...++..+.+...+.            ..-.
T Consensus       461 LGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~------------vrR~  527 (963)
T 4ady_A          461 IGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGN------------ITRG  527 (963)
T ss_dssp             HHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHH------------HHHH
T ss_pred             HHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHH------------HHHH
Confidence            6666665554 466777777776432211  344567788888888766666665444322111            1112


Q ss_pred             HHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhh-HHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 004249          456 IKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEE-HRLLIIDLCKTLASLHRYEDAIKIINLILK  523 (765)
Q Consensus       456 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  523 (765)
                      ..+|..+...|+.+.+-..+ +.+...       .+|. ...+.+.+|..|...|+...-..++..+..
T Consensus       528 aalgLGll~~g~~e~~~~li-~~L~~~-------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~  588 (963)
T 4ady_A          528 LAVGLALINYGRQELADDLI-TKMLAS-------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS  588 (963)
T ss_dssp             HHHHHHHHTTTCGGGGHHHH-HHHHHC-------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhCCChHHHHHHH-HHHHhC-------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence            23333333455554433333 333221       2222 233445667777788887555556666654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.98  E-value=0.012  Score=59.08  Aligned_cols=116  Identities=12%  Similarity=0.039  Sum_probs=89.6

Q ss_pred             hhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhcc
Q 004249          447 AWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGY  526 (765)
Q Consensus       447 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  526 (765)
                      .+|....+-..+|.+|...|++.+|...+.++..+...++   ....-.+++..-..++...+++.++...+.++.....
T Consensus        94 r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d---d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~  170 (394)
T 3txn_A           94 RTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLD---DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN  170 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS---CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc---cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence            3455555666999999999999999999998887653311   1234466777777889999999999999999987664


Q ss_pred             C--CCCchHHHHHHHHhhccc-ccCChhhHHHHHHHHHHhCC
Q 004249          527 G--KFPVEKEELYFLGAQIPC-NTTDPKLWFDGVRFMVKLHP  565 (765)
Q Consensus       527 ~--~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~l~~~p  565 (765)
                      .  ..|.....+...+|.++. ..++|..|...|-.++..+.
T Consensus       171 ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~  212 (394)
T 3txn_A          171 AIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD  212 (394)
T ss_dssp             HSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             cCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence            3  224446778888887888 89999999999999986554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.92  E-value=0.021  Score=46.89  Aligned_cols=76  Identities=5%  Similarity=-0.148  Sum_probs=50.4

Q ss_pred             CCchHHHHHHHHHHHcCCHH---HHHHHHHHHhccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 004249          123 ELPNSYHILGLVHDALGNTA---KAMGCYWLAACYKQK-DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFH  198 (765)
Q Consensus       123 ~~~~~~~~l~~~~~~~g~~~---~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  198 (765)
                      .++.+.+.+|+++....+..   +++..++..+...|. ..+.++.+|..++++|+|.+|..+.+.+++..|++..+...
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L  116 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  116 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            44567777777777666443   566777777666664 34666667777777777777777777777777777655443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.92  E-value=0.0061  Score=49.38  Aligned_cols=69  Identities=10%  Similarity=-0.040  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHcCCH---HHHHHHHHHHHHhhCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHH
Q 004249           94 MLGDASLHYALGRY---EEAISVLHEVIRLEEE-LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLW  162 (765)
Q Consensus        94 ~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~  162 (765)
                      .|..|.++....+.   .+++.+++.+++.+|. .-+.++.+|..++++|+|++|..+.+.+++..|++..+.
T Consensus        43 ~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~  115 (134)
T 3o48_A           43 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  115 (134)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence            34444444444332   2455555555554442 234555555555555555555555555555555555443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=96.82  E-value=0.74  Score=49.45  Aligned_cols=409  Identities=11%  Similarity=0.038  Sum_probs=213.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCHHHHHHHH--
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALG--NTAKAMGCYWLAACYKQKDSSLWKLIF--  166 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~la--  166 (765)
                      -...+..|...+..|++..+..+...+ ...|-  ..+......-...+  ...    .+...+...|+.+..-....  
T Consensus         6 ~~~~~~~a~~a~~~~~~~~~~~l~~~l-~~~pL--~~yl~y~~l~~~l~~~~~~----ev~~Fl~~~~~~p~~~~Lr~~~   78 (618)
T 1qsa_A            6 QRSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPL--YPYLEYRQITDDLMNQPAV----TVTNFVRANPTLPPARTLQSRF   78 (618)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTT--HHHHHHHHHHHTGGGCCHH----HHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhh-cCCCc--HHHHHHHHHHhCcccCCHH----HHHHHHHHCCCChhHHHHHHHH
Confidence            345677888899999998777765432 22332  23322222222222  333    33444555777775543322  


Q ss_pred             -HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004249          167 -PWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIES  245 (765)
Q Consensus       167 -~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  245 (765)
                       ..+.+.+++..-+.++..    .|.+..............|+..+|......+.......+.....+...+...|....
T Consensus        79 l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~  154 (618)
T 1qsa_A           79 VNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDP  154 (618)
T ss_dssp             HHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCH
T ss_pred             HHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCH
Confidence             234456777766665543    378888888888899999999888888887776554444444444444444444332


Q ss_pred             HH--HHHHHHHhcC------------CCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004249          246 SV--DILEDYLKGH------------PTEADFGVIDLLASMLVQM-NAYDRVLKHIELVDLVYYSGKELLLALKIKAGIC  310 (765)
Q Consensus       246 A~--~~~~~~~~~~------------p~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~  310 (765)
                      ..  .-+..++...            |...     ..++..+... .+...+....    ...+  ...........+..
T Consensus       155 ~~~~~R~~~al~~~~~~~a~~l~~~l~~~~-----~~~a~~~~al~~~p~~~~~~~----~~~~--~~~~~~~~~~~~~~  223 (618)
T 1qsa_A          155 LAYLERIRLAMKAGNTGLVTVLAGQMPADY-----QTIASAIISLANNPNTVLTFA----RTTG--ATDFTRQMAAVAFA  223 (618)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTCCGGG-----HHHHHHHHHHHHCGGGHHHHH----HHSC--CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhCCHHH-----HHHHHHHHHHHhChHhHHHHH----hccC--CChhhHHHHHHHHH
Confidence            21  1122222111            1110     0111111111 1111111111    1000  01111122333444


Q ss_pred             HHhcCChhHHHHHHHhhcccCCCChHH---HHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhcc
Q 004249          311 HIQLGNTDKAEILLTAIHWENVSDHAE---SINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKE  387 (765)
Q Consensus       311 ~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  387 (765)
                      .....+.+.|...+........-+...   ....++..+...+...++...+.+....  .. +......++......|+
T Consensus       224 rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~e~~~r~Alr~~d  300 (618)
T 1qsa_A          224 SVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQ-STSLIERRVRMALGTGD  300 (618)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CC-CHHHHHHHHHHHHHHTC
T ss_pred             HHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CC-ChHHHHHHHHHHHHCCC
Confidence            455568888888887764322122222   3333444445555456777777765543  33 33334444445567799


Q ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcch
Q 004249          388 REKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGM  467 (765)
Q Consensus       388 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  467 (765)
                      +..|..+|..+-...+......+.+|+.+...|+.++|..+|+++...  .+              .|-.++.  ...|.
T Consensus       301 ~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~--~~--------------fYg~lAa--~~Lg~  362 (618)
T 1qsa_A          301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ--RG--------------FYPMVAA--QRIGE  362 (618)
T ss_dssp             HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CS--------------HHHHHHH--HHTTC
T ss_pred             HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CC--------------hHHHHHH--HHcCC
Confidence            999999988766544456778889999999999999999988877652  22              0111111  11121


Q ss_pred             hHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhccccc
Q 004249          468 IEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNT  547 (765)
Q Consensus       468 ~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  547 (765)
                      .-.    +     ....+.......-........+..+...|....|...+..+....    +  +.....++. +....
T Consensus       363 ~~~----~-----~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~----~--~~~~~~la~-~a~~~  426 (618)
T 1qsa_A          363 EYE----L-----KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK----S--KTEQAQLAR-YAFNN  426 (618)
T ss_dssp             CCC----C-----CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C--HHHHHHHHH-HHHHT
T ss_pred             CCC----C-----CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC----C--HHHHHHHHH-HHHHC
Confidence            000    0     000000000000011123455677888999999999888777533    2  222333333 56677


Q ss_pred             CChhhHHHHHH
Q 004249          548 TDPKLWFDGVR  558 (765)
Q Consensus       548 g~~~~A~~~~~  558 (765)
                      |.+..++....
T Consensus       427 ~~~~~~v~~~~  437 (618)
T 1qsa_A          427 QWWDLSVQATI  437 (618)
T ss_dssp             TCHHHHHHHHH
T ss_pred             CChHHHHHHHH
Confidence            88887775554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.81  E-value=0.029  Score=46.12  Aligned_cols=77  Identities=13%  Similarity=0.040  Sum_probs=53.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 004249          156 QKDSSLWKLIFPWLIEQGDT---TWAMSCLSEAVKADP-NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALK  231 (765)
Q Consensus       156 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  231 (765)
                      .-.+.+.+.+|.++....+.   .+++.+++..+...| ...+.++.+|..+++.|+|++|..+.+.+++..|++..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            34667777777777776654   357777777777666 34567777777777777777777777777777777766544


Q ss_pred             H
Q 004249          232 M  232 (765)
Q Consensus       232 ~  232 (765)
                      .
T Consensus       116 L  116 (144)
T 1y8m_A          116 L  116 (144)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.79  E-value=0.02  Score=46.41  Aligned_cols=73  Identities=14%  Similarity=0.033  Sum_probs=36.1

Q ss_pred             CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 004249          158 DSSLWKLIFPWLIEQGDT---TWAMSCLSEAVKADP-NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEAL  230 (765)
Q Consensus       158 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  230 (765)
                      .+.+.+.+|.++.+..+.   .+++.+++..+..+| ...+.++.+|..+.+.|+|++|..+.+.+++..|++..+.
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~  115 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  115 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence            334445555555444432   234555555554444 2244555555555555555555555555555555554443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.75  E-value=0.24  Score=51.18  Aligned_cols=204  Identities=10%  Similarity=0.056  Sum_probs=123.6

Q ss_pred             cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHH
Q 004249           88 CPEIRRMLGDASLHYALGRYEEAISVLHEVIRLE------EELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSL  161 (765)
Q Consensus        88 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~  161 (765)
                      ++++...+..+..+. .|++++|++.+...-+..      +....+...+..++...|+++...+.+.-..........+
T Consensus        14 s~~~~~~~~~~~~l~-~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a   92 (445)
T 4b4t_P           14 SQILKEEFPKIDSLA-QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS   92 (445)
T ss_dssp             --------------C-HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH
T ss_pred             HHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH
Confidence            445555666665553 478999999886655442      2345678888889999999999888877666555444443


Q ss_pred             HHHHHHHH---H-HcCCHHH--HHHHHHHHHhcCCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CC-C
Q 004249          162 WKLIFPWL---I-EQGDTTW--AMSCLSEAVKADPN-------DFKLKFHLASLYVELGNFQRAADVYRQMVQLC-PE-N  226 (765)
Q Consensus       162 ~~~la~~~---~-~~g~~~~--A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~-~  226 (765)
                      -..+....   . .....+.  -+...+.......+       .......|+.++...|++.+|...+.....-. .. +
T Consensus        93 i~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~  172 (445)
T 4b4t_P           93 IQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSME  172 (445)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC
T ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc
Confidence            33332221   1 1222221  11111111111111       23456788999999999999999998875422 11 1


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          227 ----IEALKMGAKLYQKSGQIESSVDILEDYLK---GHPTEAD--FGVIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       227 ----~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                          .+.+.....+|...+++.+|...+.++..   ..+..+.  ...+...|.++...++|.+|-.+|..+...
T Consensus       173 ~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          173 MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence                46777888999999999999999988642   1222222  334567888888999999999999888776

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.55  E-value=0.27  Score=55.93  Aligned_cols=122  Identities=19%  Similarity=0.086  Sum_probs=77.9

Q ss_pred             HHHHHcCCHHHHHH-HHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 004249           99 SLHYALGRYEEAIS-VLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTW  177 (765)
Q Consensus        99 ~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~  177 (765)
                      ......+++++|.. ++..    -| +......+...+...|.+++|++..+        ++...+   ......|++++
T Consensus       607 ~~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~  670 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTL  670 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHH
T ss_pred             hHHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHH
Confidence            34567899999877 4411    01 01222566677788888888886552        232222   34567889999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004249          178 AMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDI  249 (765)
Q Consensus       178 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  249 (765)
                      |.+..+.     .++...|..+|..+...|+++.|+.+|.++-     +   +..+..++...|+.+.....
T Consensus       671 A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~-----d---~~~l~~l~~~~~~~~~~~~~  729 (814)
T 3mkq_A          671 ARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAH-----D---LESLFLLHSSFNNKEGLVTL  729 (814)
T ss_dssp             HHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-----C---HHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc-----C---hhhhHHHHHHcCCHHHHHHH
Confidence            8887543     3567888999999999999999999988762     2   22334444445555544333

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.37  E-value=0.26  Score=49.33  Aligned_cols=98  Identities=12%  Similarity=-0.001  Sum_probs=59.3

Q ss_pred             HHHHHHHHhcCChhHHHHHHHhhcccCC-----CChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCC-CCCH----HH
Q 004249          305 IKAGICHIQLGNTDKAEILLTAIHWENV-----SDHAESINEIADLFKNRELYSTALKYYHMLEANAGV-HNDG----CL  374 (765)
Q Consensus       305 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~----~~  374 (765)
                      ..+|..|+..|++.+|.+.+.++.....     ..-.+++.....+|...+++.++...+.++...... +.+|    ..
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i  182 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL  182 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            3667777777777777777666553221     122345556667777777777777777776544211 1222    23


Q ss_pred             HHHHHHHHH-HhccHHHHHHHHHHHHHHc
Q 004249          375 HLKIAECSL-ALKEREKSIIYFYKALQIL  402 (765)
Q Consensus       375 ~~~la~~~~-~~g~~~~A~~~~~~al~~~  402 (765)
                      ...-|..+. ..++|..|...|-++++..
T Consensus       183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          183 DLQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence            344566667 6777777777777766443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.29  E-value=0.12  Score=58.79  Aligned_cols=76  Identities=16%  Similarity=-0.009  Sum_probs=42.5

Q ss_pred             HccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--------HcCCCHHHHHHHHHHHHH
Q 004249          347 KNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQ--------ILEDNIDARLTLASLLLE  418 (765)
Q Consensus       347 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~~~~  418 (765)
                      ...|++++|.++.+       ..+++..|..+|..+...|+++.|..+|.++-.        ....+.+....++.+...
T Consensus       663 l~~~~~~~A~~~~~-------~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~  735 (814)
T 3mkq_A          663 LKVGQLTLARDLLT-------DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAET  735 (814)
T ss_dssp             HHHTCHHHHHHHHT-------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHH-------hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence            45566666666542       234556666677777777777777666666421        113344444455555555


Q ss_pred             cCCHHHHHHhc
Q 004249          419 DAKDEEAISLL  429 (765)
Q Consensus       419 ~g~~~~A~~~~  429 (765)
                      .|++..|...+
T Consensus       736 ~~~~~~A~~~~  746 (814)
T 3mkq_A          736 TGKFNLAFNAY  746 (814)
T ss_dssp             TTCHHHHHHHH
T ss_pred             cCchHHHHHHH
Confidence            55555555444

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.44  Score=49.18  Aligned_cols=110  Identities=21%  Similarity=0.190  Sum_probs=86.2

Q ss_pred             hhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhc-cC-C
Q 004249          451 NIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLG-YG-K  528 (765)
Q Consensus       451 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~-~  528 (765)
                      ..++...++.++...|++.+|.+.+..+..+..+   ......-.+.+.....++...+++..|..+++++.... .. .
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~---~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~  212 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYG---SMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK  212 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS---SSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC
Confidence            3567789999999999999999999998876543   22344567788888999999999999999999986422 11 2


Q ss_pred             CCchHHHHHHHHhhcccccCChhhHHHHHHHHHHh
Q 004249          529 FPVEKEELYFLGAQIPCNTTDPKLWFDGVRFMVKL  563 (765)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~  563 (765)
                      .|.-...++..++.++...++|.+|..+|..++..
T Consensus       213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            23335567777887888999999999999999864

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.12  E-value=0.023  Score=63.25  Aligned_cols=111  Identities=13%  Similarity=-0.013  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHH
Q 004249          227 IEALKMGAKLYQKSGQIESSVDILEDYLKG--HPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALK  304 (765)
Q Consensus       227 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  304 (765)
                      ...+..+...|++.|+.++|..+|..+.+.  ..-.++...|+.+...|++.|+.++|.++|+++...   +-..+...+
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~---G~~PDvvTY  203 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA---GLTPDLLSY  203 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TCCCCHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCcHHHH
Confidence            456788889999999999999999876543  123455558899999999999999999999999776   234456667


Q ss_pred             HHHHHHHHhcCCh-hHHHHHHHhhcccCCCChHHHHH
Q 004249          305 IKAGICHIQLGNT-DKAEILLTAIHWENVSDHAESIN  340 (765)
Q Consensus       305 ~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~  340 (765)
                      ..+..++.+.|+. ++|.++|+++.......+...+.
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~  240 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA  240 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcc
Confidence            7777788888875 67889999987766555554443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.02  E-value=0.55  Score=52.36  Aligned_cols=254  Identities=11%  Similarity=0.002  Sum_probs=131.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHhh-CCC----chHHHHHHHHHHHcCCHHHHHHHHHHHhccCC---C---CH----HHHHHH
Q 004249          101 HYALGRYEEAISVLHEVIRLE-EEL----PNSYHILGLVHDALGNTAKAMGCYWLAACYKQ---K---DS----SLWKLI  165 (765)
Q Consensus       101 ~~~~g~~~~A~~~~~~~l~~~-p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p---~---~~----~~~~~l  165 (765)
                      ....|+.++++..+.+.+... .++    ..+.+.+|.++...+  .+++..+...+..+.   .   ..    .+-..|
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL  461 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI  461 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence            445677777777777665421 112    245555666555444  467777776665332   0   11    234456


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 004249          166 FPWLIEQGDTTWAMSCLSEAVKADPND--FKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQI  243 (765)
Q Consensus       166 a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  243 (765)
                      |.++...++ +++...+..++..+...  ..+-+.+|.++...|+-+.....+..+.+...+...-...+|..+...|+.
T Consensus       462 Gla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~  540 (963)
T 4ady_A          462 GLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ  540 (963)
T ss_dssp             HHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred             HHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence            666665554 45666666666533211  134456777777778776666666655543322222223344444566777


Q ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHH
Q 004249          244 ESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEIL  323 (765)
Q Consensus       244 ~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  323 (765)
                      +.+-.+.+.+...........+...+|..|...|+......++..+...    ..........++......|+.+.+...
T Consensus       541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d----~~d~VRraAViaLGlI~~g~~e~v~rl  616 (963)
T 4ady_A          541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD----SNDDVRRAAVIALGFVLLRDYTTVPRI  616 (963)
T ss_dssp             GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC----CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence            7666666655443221122223345666777788865444466665543    222222233344445556776655665


Q ss_pred             HHhhcccCCCChHHHHHHHHHHH--Hcccc-HHHHHHHHHHHHh
Q 004249          324 LTAIHWENVSDHAESINEIADLF--KNREL-YSTALKYYHMLEA  364 (765)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~la~~~--~~~g~-~~~A~~~~~~~~~  364 (765)
                      +..+...   .++.+....+.++  ...|+ ..+++..+.++..
T Consensus       617 v~~L~~~---~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          617 VQLLSKS---HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             TTTGGGC---SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHHHHhc---CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            5544332   2244333333222  22222 2677777777753

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.93  E-value=0.63  Score=39.11  Aligned_cols=161  Identities=14%  Similarity=0.023  Sum_probs=106.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhc--c---------------CCC
Q 004249           95 LGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAAC--Y---------------KQK  157 (765)
Q Consensus        95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~---------------~p~  157 (765)
                      +..+..++-.|.|..++-.+..     -+...+.+.-+.||...+++..|+..++..+.  .               +|.
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~  111 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG  111 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred             hhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence            3345778889999998877643     24567788889999999999999999999883  2               344


Q ss_pred             CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH-----------HHHH------HhCCHHHHH------
Q 004249          158 DSSL-WKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLA-----------SLYV------ELGNFQRAA------  213 (765)
Q Consensus       158 ~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-----------~~~~------~~g~~~~A~------  213 (765)
                      +.+. +..+|.++...|+.++|+.++.......|-.+.+-..+-           .+..      +...+....      
T Consensus       112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~  191 (242)
T 3kae_A          112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESL  191 (242)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhc
Confidence            4444 445899999999999999999988877664332211100           0000      000011111      


Q ss_pred             --HHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249          214 --DVYRQMVQLCPENIE-ALKMGAKLYQKSGQIESSVDILEDYLKGHPTE  260 (765)
Q Consensus       214 --~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  260 (765)
                        ...++-...-|.-.. .....+..|+..|-.++...+|...-+.+|..
T Consensus       192 s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F  241 (242)
T 3kae_A          192 SPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF  241 (242)
T ss_dssp             CHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred             cHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence              222333334455433 23456788899999999999999999988863

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.75  E-value=0.46  Score=41.08  Aligned_cols=45  Identities=18%  Similarity=0.116  Sum_probs=24.1

Q ss_pred             HHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249          102 YALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLA  151 (765)
Q Consensus       102 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  151 (765)
                      +..|+++.|.++.++.     ++...|..+|......|+++-|..+|.++
T Consensus        16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            4555555555554433     34455555555555555555555555544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.71  E-value=0.45  Score=41.15  Aligned_cols=109  Identities=16%  Similarity=0.111  Sum_probs=80.0

Q ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 004249          124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLY  203 (765)
Q Consensus       124 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  203 (765)
                      +++..+.++   ...|+++.|.+..+..     ++...|..||......|+++-|..+|.++-     +.   -.+..+|
T Consensus         7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D~---~~L~~Ly   70 (177)
T 3mkq_B            7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH-----SF---DKLSFLY   70 (177)
T ss_dssp             CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----CH---HHHHHHH
T ss_pred             ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----CH---HHHHHHH
Confidence            445555544   5789999999998765     678899999999999999999999999863     33   2455566


Q ss_pred             HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249          204 VELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDY  253 (765)
Q Consensus       204 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  253 (765)
                      ...|+.+.-...-+.+.....     +.....+++..|+++++++.|.+.
T Consensus        71 ~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           71 LVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            677887776665555544332     223345677889999999998765

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.54  E-value=0.92  Score=38.14  Aligned_cols=187  Identities=16%  Similarity=0.103  Sum_probs=122.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 004249           97 DASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTT  176 (765)
Q Consensus        97 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~  176 (765)
                      .....++-.+|+.++-+-.-   +.|..++....++..++-.|.+..++-.+..     -+...+.+.-+.||....++.
T Consensus         8 kI~Ks~kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYk   79 (242)
T 3kae_A            8 KICKSIRYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYK   79 (242)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHH
Confidence            33445677888887654332   3455557777889999999999999887754     255677778889999999999


Q ss_pred             HHHHHHHHHHhc-----------------CCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH---
Q 004249          177 WAMSCLSEAVKA-----------------DPNDFK-LKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAK---  235 (765)
Q Consensus       177 ~A~~~~~~al~~-----------------~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~---  235 (765)
                      .|+.+++..+.-                 +|.+.+ .+..+|.++.+.|+-++|+.++.......|-.+.+-..+-.   
T Consensus        80 kA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~v  159 (242)
T 3kae_A           80 KAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKV  159 (242)
T ss_dssp             HHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCC
Confidence            999999999832                 334444 45678999999999999999999998887654332211100   


Q ss_pred             --------HHHH------cCCHHHHHH--------HHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          236 --------LYQK------SGQIESSVD--------ILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       236 --------~~~~------~g~~~~A~~--------~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                              +...      ...+.....        ..++....-|.-.. ......+..++..|-.++...+|......
T Consensus       160 p~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGS-Y~va~aa~~yf~lg~~d~s~~lf~~lR~k  237 (242)
T 3kae_A          160 PQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGS-YFISNAARRYFNLGMNDKSKACFELVRRK  237 (242)
T ss_dssp             CCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchh-HHHHHHHHHHHhcccchhHHHHHHHHHhc
Confidence                    0000      000111111        22222223343222 23347788899999999999999988877

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.49  E-value=0.068  Score=58.43  Aligned_cols=111  Identities=12%  Similarity=0.161  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHhhCCCchHHHHHHHHHH--Hc-CCHHHHHHHHHHHhc--------cCCCCH----------HHHHHH
Q 004249          107 YEEAISVLHEVIRLEEELPNSYHILGLVHD--AL-GNTAKAMGCYWLAAC--------YKQKDS----------SLWKLI  165 (765)
Q Consensus       107 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~--~~-g~~~~A~~~~~~a~~--------~~p~~~----------~~~~~l  165 (765)
                      ++.|+.++++....+|.... ++..+.+..  .. .+--+|+..+.+.++        ..+.+.          ..+..-
T Consensus       265 ~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q  343 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ  343 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence            57788888887777765432 222222221  11 123345555555442        122221          123333


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004249          166 FPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQ  218 (765)
Q Consensus       166 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  218 (765)
                      +..+...|+++-|+.+.++++...|.....|..|+.+|..+|+|+.|+-.+..
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS  396 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS  396 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence            45555666666666666666666666666666666666666666666655443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.055  Score=59.12  Aligned_cols=115  Identities=12%  Similarity=0.052  Sum_probs=81.3

Q ss_pred             cCC-HHHHHHHHHHHhccCCCCHHHHHHHHHHH--HHc-CCHHHHHHHHHHHHhc--------CCCC----------HHH
Q 004249          138 LGN-TAKAMGCYWLAACYKQKDSSLWKLIFPWL--IEQ-GDTTWAMSCLSEAVKA--------DPND----------FKL  195 (765)
Q Consensus       138 ~g~-~~~A~~~~~~a~~~~p~~~~~~~~la~~~--~~~-g~~~~A~~~~~~al~~--------~p~~----------~~~  195 (765)
                      .|+ ++.|+..+++....+|.....+. .+.+.  ... .+--+|+..+.+.++.        .+.+          ...
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~~~~-~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDIYYK-TAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            445 57899999999888886654332 22221  122 2334577777776632        2222          234


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004249          196 KFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDY  253 (765)
Q Consensus       196 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  253 (765)
                      +...+..+...|+++-|+.+.++++...|.....|+.|+.+|..+|+|+.|+-.+..+
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            5566777788899999999999999999999999999999999999999998877665

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.16  E-value=0.28  Score=45.46  Aligned_cols=121  Identities=10%  Similarity=0.003  Sum_probs=70.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249           99 SLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWA  178 (765)
Q Consensus        99 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A  178 (765)
                      ..+++.|+.++|+......++.+|.+......+...++-.|+++.|.+.++.+.+++|.....-..+-.+       -.|
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~a   77 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKA   77 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHH
Confidence            3456677777888888777777887777777777777777888888887777777777654322111100       011


Q ss_pred             HHHHHHHHhc-----CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 004249          179 MSCLSEAVKA-----DPND---FKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN  226 (765)
Q Consensus       179 ~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  226 (765)
                      ...=.+++.-     .+..   ......-+......|+.++|...-.++++..|..
T Consensus        78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~  133 (273)
T 1zbp_A           78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  133 (273)
T ss_dssp             HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence            1111111211     1111   1223334444555677777777777777665543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.02  E-value=0.27  Score=49.77  Aligned_cols=118  Identities=15%  Similarity=-0.001  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHH-HHHHHHHhccCCCCHHHHHHHHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKA-MGCYWLAACYKQKDSSLWKLIFPWL  169 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~a~~~~p~~~~~~~~la~~~  169 (765)
                      +..+...|......|+.+.|...+.+++......+-.  ...     ...+-.+ ...++..      ...+...++..+
T Consensus       115 f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~------~~~a~~~~~~~~  181 (388)
T 2ff4_A          115 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVED------KVLAHTAKAEAE  181 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence            3445666766777899999999999999875332110  000     0111111 1111111      123455677788


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 004249          170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQ  221 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  221 (765)
                      ...|++.+|+..+..++..+|-+..++..+..++...|+..+|+..|+++.+
T Consensus       182 l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          182 IACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8899999999999999999999888999999999999999999988888754

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=94.90  E-value=0.18  Score=56.38  Aligned_cols=105  Identities=7%  Similarity=-0.064  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHH
Q 004249          265 VIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIAD  344 (765)
Q Consensus       265 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~  344 (765)
                      .++.+...|++.|+.++|..+|..+..........+...+..+...+++.|+.++|.++|+++.......+...|..+..
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~  208 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ  208 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            46677778888888888888877654331111234556677777777777777777777777766665666777777777


Q ss_pred             HHHcccc-HHHHHHHHHHHHhccCCC
Q 004249          345 LFKNREL-YSTALKYYHMLEANAGVH  369 (765)
Q Consensus       345 ~~~~~g~-~~~A~~~~~~~~~~~~~~  369 (765)
                      .+.+.|+ .++|..+|+++...+..|
T Consensus       209 glcK~G~~~e~A~~Ll~EM~~kG~~P  234 (1134)
T 3spa_A          209 CMGRQDQDAGTIERCLEQMSQEGLKL  234 (1134)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHTCCS
T ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCCC
Confidence            7777776 466777777777665444

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.72  E-value=0.27  Score=45.57  Aligned_cols=127  Identities=13%  Similarity=0.073  Sum_probs=84.2

Q ss_pred             HHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHH
Q 004249          381 CSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCR  460 (765)
Q Consensus       381 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  460 (765)
                      -..+.|+.++|+......++.+|.+.+.+..+..+++-.|+++.|.+.++.+.+.+|..            .    ..+.
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~------------~----~~a~   69 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY------------L----PGAS   69 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG------------H----HHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh------------h----HHHH
Confidence            34567888888888888888889988888888888888899999988888888877775            0    1111


Q ss_pred             HHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccC
Q 004249          461 IYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYG  527 (765)
Q Consensus       461 ~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  527 (765)
                      .|...=+-+    ..+..+-.......++..|..+.....-+......|+.++|...-..+++..|.
T Consensus        70 ~yr~lI~aE----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~  132 (273)
T 1zbp_A           70 QLRHLVKAA----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  132 (273)
T ss_dssp             HHHHHHHHH----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHH----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence            111000000    111111111122344455555666666667777789999999999999887643

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.67  E-value=0.9  Score=45.92  Aligned_cols=111  Identities=16%  Similarity=0.044  Sum_probs=62.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 004249          167 PWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRA-ADVYRQMVQLCPENIEALKMGAKLYQKSGQIES  245 (765)
Q Consensus       167 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  245 (765)
                      ......|+...|...+.+++.+....+-.  ...     ...+-.+ ...++...      ..+...++..+...|++.+
T Consensus       123 ~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~g~~~~  189 (388)
T 2ff4_A          123 VHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVEDK------VLAHTAKAEAEIACGRASA  189 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCHHH
Confidence            33445688888888888888874322100  000     0111111 11111110      1234455666667777777


Q ss_pred             HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          246 SVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       246 A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                      ++..+..++..+|-+..  ++..+..++...|+..+|+..|+++...
T Consensus       190 a~~~l~~~~~~~P~~E~--~~~~lm~al~~~Gr~~~Al~~y~~~r~~  234 (388)
T 2ff4_A          190 VIAELEALTFEHPYREP--LWTQLITAYYLSDRQSDALGAYRRVKTT  234 (388)
T ss_dssp             HHHHHHHHHHHSTTCHH--HHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            77777777777776655  5567777777777777777777776655

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.28  E-value=2.8  Score=49.26  Aligned_cols=59  Identities=12%  Similarity=-0.008  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249          194 KLKFHLASLYVELGNFQRAADVYRQMVQLCPEN-I----EALKMGAKLYQKSGQIESSVDILED  252 (765)
Q Consensus       194 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~----~~~~~la~~~~~~g~~~~A~~~~~~  252 (765)
                      ..|..+..++.+.|.++.+++..+.+++..+.+ .    ..|..+-..+...|+|++|...+..
T Consensus       900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            344555555556666666666666665544322 1    1344455555566666666555533

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.02  E-value=1  Score=46.42  Aligned_cols=138  Identities=15%  Similarity=0.189  Sum_probs=56.8

Q ss_pred             CcHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHH-----------hhCCCchHHHHHHHHHHHcCCHHHHH--------
Q 004249           87 VCPEIRRML--GDASLHYALGRYEEAISVLHEVIR-----------LEEELPNSYHILGLVHDALGNTAKAM--------  145 (765)
Q Consensus        87 ~~~~~~~~~--~~a~~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~~~l~~~~~~~g~~~~A~--------  145 (765)
                      ..|++..++  ..-..++..+++++|..+-...+.           .++-.+.+|+..+.++...|+.....        
T Consensus       130 ~~pE~~~y~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~  209 (523)
T 4b4t_S          130 VTAEINCFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNII  209 (523)
T ss_dssp             -------------------------------------------------------------------------CHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhh
Confidence            345555443  223446678899999888776541           13344577888888888888765532        


Q ss_pred             --HHHHHHh-----ccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhCCHH
Q 004249          146 --GCYWLAA-----CYKQK-DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND-------FKLKFHLASLYVELGNFQ  210 (765)
Q Consensus       146 --~~~~~a~-----~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~  210 (765)
                        ..+..++     ..++. ....+..+-+.|...+.+++|..+..++.  .|..       ...++.+|.++.-+++|.
T Consensus       210 ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~  287 (523)
T 4b4t_S          210 LRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYS  287 (523)
T ss_dssp             HHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHH
Confidence              1222221     22332 23566778889999999999999999885  3432       345677899999999999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 004249          211 RAADVYRQMVQLCPEN  226 (765)
Q Consensus       211 ~A~~~~~~al~~~p~~  226 (765)
                      +|.+++..++...|.+
T Consensus       288 eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          288 TANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHTSSCSCS
T ss_pred             HHHHHHHHHHHhCCcc
Confidence            9999999999888765

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.42  E-value=0.79  Score=47.10  Aligned_cols=64  Identities=17%  Similarity=0.132  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-FGVIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       229 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                      ++..+|..|...|++++|.+.|.++......... ...+.....++...+++..+...+.++...
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~  197 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM  197 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            4555666666666666666666655544332221 334445555666666666666666666554

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.00  E-value=0.83  Score=46.92  Aligned_cols=101  Identities=11%  Similarity=0.039  Sum_probs=71.8

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH----H
Q 004249          192 DFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN---IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADF----G  264 (765)
Q Consensus       192 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----~  264 (765)
                      -..++..+|..|...|+++.|.+.|.++.......   .+.+.....++...+++..+...+.++.........+    .
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~  209 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR  209 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence            34567888888888899988888888887654332   5677888888888899999888888876553333221    1


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 004249          265 VIDLLASMLVQMNAYDRVLKHIELVDLV  292 (765)
Q Consensus       265 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~  292 (765)
                      .....|.++...++|.+|...|-.+...
T Consensus       210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          210 YKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            2224455666778888888888777655

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.91  E-value=15  Score=43.21  Aligned_cols=199  Identities=12%  Similarity=0.055  Sum_probs=123.7

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C-----------------
Q 004249          197 FHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGH-P-----------------  258 (765)
Q Consensus       197 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p-----------------  258 (765)
                      ..+...+...+.++-+..    .+...|.++...+.+|.++...|++++|..+|+++...- .                 
T Consensus       816 ~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~  891 (1139)
T 4fhn_B          816 TELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK  891 (1139)
T ss_dssp             HHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence            345556677777766654    445677888888999999999999999999998863211 1                 


Q ss_pred             ---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCC
Q 004249          259 ---TEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKEL-LLALKIKAGICHIQLGNTDKAEILLTAIHWENVSD  334 (765)
Q Consensus       259 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  334 (765)
                         .......|..+..++.+.+.++.+++..+.+++....+++. ....+..+-..++..|+|++|...+...-..  ..
T Consensus       892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~--~~  969 (1139)
T 4fhn_B          892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT--PL  969 (1139)
T ss_dssp             TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS--SS
T ss_pred             ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH--HH
Confidence               11112345677888899999999999999999874433322 2336777788899999999998888665321  22


Q ss_pred             hHHHHHHHHHHHHcccc------------HHHHHHHHHH-HHhccCCCCCHHHHHHHHHHHHHhccHHHHH-HHHHHHHH
Q 004249          335 HAESINEIADLFKNREL------------YSTALKYYHM-LEANAGVHNDGCLHLKIAECSLALKEREKSI-IYFYKALQ  400 (765)
Q Consensus       335 ~~~~~~~la~~~~~~g~------------~~~A~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~  400 (765)
                      ..+.+..+...++..|.            .++...++.. +.........+..|..|-..+...|++..|. ..|+.+.+
T Consensus       970 r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B          970 KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence            23444444444444433            3333333321 1111001112334444555566677765544 56677665


Q ss_pred             H
Q 004249          401 I  401 (765)
Q Consensus       401 ~  401 (765)
                      +
T Consensus      1050 L 1050 (1139)
T 4fhn_B         1050 Y 1050 (1139)
T ss_dssp             H
T ss_pred             h
Confidence            5

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.56  E-value=0.87  Score=47.33  Aligned_cols=80  Identities=16%  Similarity=-0.029  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004249          161 LWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS  240 (765)
Q Consensus       161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  240 (765)
                      .+..||.+......+..|..+|.+|..+.|.+...+..+|.+....|+.-+|+-+|.+++......+.+..++..++.+.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~  233 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence            56778999888889999999999999999999999999999999999999999999999887777788888888877654

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.76  E-value=1.2  Score=45.80  Aligned_cols=148  Identities=11%  Similarity=0.054  Sum_probs=64.2

Q ss_pred             HHHcCCHHHHHHHHHHHHh---c--------CCCCHHHHHHHHHHHHHhCCHHHHH----------HHHHHHHHh-----
Q 004249          169 LIEQGDTTWAMSCLSEAVK---A--------DPNDFKLKFHLASLYVELGNFQRAA----------DVYRQMVQL-----  222 (765)
Q Consensus       169 ~~~~g~~~~A~~~~~~al~---~--------~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~-----  222 (765)
                      ++..+++++|..+-...+.   +        ++-...+|+..+.++...|+.....          ..+-.+++.     
T Consensus       146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~  225 (523)
T 4b4t_S          146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH  225 (523)
T ss_dssp             ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence            5567788888877765541   1        3334566777777777777665432          222222221     


Q ss_pred             CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Q 004249          223 CPEN-IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTE-AD----FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSG  296 (765)
Q Consensus       223 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  296 (765)
                      ++.. ...+..+-+.|...+.+++|..+..+..  .|.. ..    .+.++.+|.++.-.++|.+|.+.+..++...+++
T Consensus       226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            2211 4567788889999999999999998874  4543 11    4456678999999999999999999988774432


Q ss_pred             CCcc---HHHHHHHHHHHHhcCChh
Q 004249          297 KELL---LALKIKAGICHIQLGNTD  318 (765)
Q Consensus       297 ~~~~---~~~~~~l~~~~~~~~~~~  318 (765)
                      ....   ..++-.+..+-+-+|+..
T Consensus       304 ~~a~gfr~~a~K~lI~V~LLlG~iP  328 (523)
T 4b4t_S          304 SKSLGFLQQSNKLHCCIQLLMGDIP  328 (523)
T ss_dssp             SSCSHHHHHHHHHHHHHHHHHTCCC
T ss_pred             hhhhhHHHHHHHHHHhHHhhcCCCC
Confidence            2221   223323344444456654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=90.68  E-value=1.3  Score=46.05  Aligned_cols=81  Identities=17%  Similarity=0.099  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 004249          194 KLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASML  273 (765)
Q Consensus       194 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~  273 (765)
                      ..+..+|++......+..|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|-+++......+.  +..++..++
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~--a~~nL~~~f  230 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA--ASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH--HHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChh--HHHHHHHHH
Confidence            367889999999999999999999999999999999999999999999999999999999876544433  566777777


Q ss_pred             HHh
Q 004249          274 VQM  276 (765)
Q Consensus       274 ~~~  276 (765)
                      ...
T Consensus       231 ~~~  233 (497)
T 1ya0_A          231 SKA  233 (497)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=90.09  E-value=1.2e-05  Score=80.20  Aligned_cols=234  Identities=12%  Similarity=0.066  Sum_probs=119.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004249          157 KDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKL  236 (765)
Q Consensus       157 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  236 (765)
                      +.+.+|..+|.++...++..+|++.|-++     +++..+.....+..+.|.+++-+.+++.+-+. -..+.+-..|..+
T Consensus        52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a  125 (624)
T 3lvg_A           52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA  125 (624)
T ss_dssp             CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred             CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence            34556777777777777777776666432     33334444555555666666666666655443 2233334455556


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC
Q 004249          237 YQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGN  316 (765)
Q Consensus       237 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  316 (765)
                      |.+.++..+-.+.    + ..|+...   ....|.-++..|.|+.|.-+|..+-            -+..++.++..+|+
T Consensus       126 yAk~~rL~elEef----l-~~~N~A~---iq~VGDrcf~e~lYeAAKilys~is------------N~akLAstLV~L~~  185 (624)
T 3lvg_A          126 LAKTNRLAELEEF----I-NGPNNAH---IQQVGDRCYDEKMYDAAKLLYNNVS------------NFGRLASTLVHLGE  185 (624)
T ss_dssp             HHTSCSSSTTTST----T-SCCSSSC---THHHHHHHHHSCCSTTSSTTGGGSC------------CCTTTSSSSSSCSG
T ss_pred             HHhhCcHHHHHHH----H-cCCCccc---HHHHHHHHHHccCHHHHHHHHHhCc------------cHHHHHHHHHHHHH
Confidence            6666664432211    1 1344433   2356666666666665555443221            11244555566666


Q ss_pred             hhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 004249          317 TDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFY  396 (765)
Q Consensus       317 ~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  396 (765)
                      +..|++.-+++      +++.+|......+...+.+.-|..+--.++-.   ++.   +-.+...|...|-+++-+..++
T Consensus       186 yq~AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ade---L~elv~~YE~~G~f~ELIsLlE  253 (624)
T 3lvg_A          186 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---ADE---LEELINYYQDRGYFEELITMLE  253 (624)
T ss_dssp             GGSSTTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SSC---CSGGGSSSSTTCCCTTSTTTHH
T ss_pred             HHHHHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HHH---HHHHHHHHHhCCCHHHHHHHHH
Confidence            66665554443      22344555555555556555554443333321   221   1123344555666666666666


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhc
Q 004249          397 KALQILEDNIDARLTLASLLLEDAKDEEAISLL  429 (765)
Q Consensus       397 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  429 (765)
                      .++.+..........||.+|.+- ++++-.+.+
T Consensus       254 aglglErAHmGmFTELaILYsKY-~PeKlmEHl  285 (624)
T 3lvg_A          254 AALGLERAHMGMFTELAILYSKF-KPQKMREHL  285 (624)
T ss_dssp             HHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred             HHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHH
Confidence            66655555555555566555443 233444333

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=89.02  E-value=8.3e-05  Score=74.24  Aligned_cols=225  Identities=12%  Similarity=0.098  Sum_probs=166.4

Q ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004249          123 ELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL  202 (765)
Q Consensus       123 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  202 (765)
                      +.+.+|..+|.++...|+..+|+..|-++     +++..+.....+..+.|.+++=+.++..+-+. ...+.+-..|..+
T Consensus        52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a  125 (624)
T 3lvg_A           52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA  125 (624)
T ss_dssp             CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred             CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence            56789999999999999999999988765     34444556667778899999999998877654 3445555678888


Q ss_pred             HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHH
Q 004249          203 YVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRV  282 (765)
Q Consensus       203 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A  282 (765)
                      |.+.++..+-.+++     ..|+.+. ....|.-++..|.|+.|.-+|..+    ++      |..|+.++..+|+|..|
T Consensus       126 yAk~~rL~elEefl-----~~~N~A~-iq~VGDrcf~e~lYeAAKilys~i----sN------~akLAstLV~L~~yq~A  189 (624)
T 3lvg_A          126 LAKTNRLAELEEFI-----NGPNNAH-IQQVGDRCYDEKMYDAAKLLYNNV----SN------FGRLASTLVHLGEYQAA  189 (624)
T ss_dssp             HHTSCSSSTTTSTT-----SCCSSSC-THHHHHHHHHSCCSTTSSTTGGGS----CC------CTTTSSSSSSCSGGGSS
T ss_pred             HHhhCcHHHHHHHH-----cCCCccc-HHHHHHHHHHccCHHHHHHHHHhC----cc------HHHHHHHHHHHHHHHHH
Confidence            88888865543332     2354443 457899999999999987766432    22      23788889999999999


Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHH
Q 004249          283 LKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHML  362 (765)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  362 (765)
                      ++.-+++         .+...|-....++...+++.-|..+--.++-.     ++-+-.+...|...|.+++-+.+++..
T Consensus       190 VdaArKA---------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEag  255 (624)
T 3lvg_A          190 VDGARKA---------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAA  255 (624)
T ss_dssp             TTTTTTC---------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred             HHHHHhc---------CChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            8876554         34455666777888999998887776665422     111233556788999999999999999


Q ss_pred             HhccCCCCCHHHHHHHHHHHHHh
Q 004249          363 EANAGVHNDGCLHLKIAECSLAL  385 (765)
Q Consensus       363 ~~~~~~~~~~~~~~~la~~~~~~  385 (765)
                      +.+  ..-+...+..||.+|.+-
T Consensus       256 lgl--ErAHmGmFTELaILYsKY  276 (624)
T 3lvg_A          256 LGL--ERAHMGMFTELAILYSKF  276 (624)
T ss_dssp             TTS--TTCCHHHHHHHHHHHHSS
T ss_pred             hCC--CchhHHHHHHHHHHHHhc
Confidence            987  677888888888888664

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=86.88  E-value=23  Score=34.20  Aligned_cols=42  Identities=17%  Similarity=0.108  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcC
Q 004249          389 EKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLT  430 (765)
Q Consensus       389 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  430 (765)
                      .+|+.+-.+.=...-.+++.+..+|..|.+.|++.+|..+|-
T Consensus       119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i  160 (336)
T 3lpz_A          119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV  160 (336)
T ss_dssp             HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            444444443212234678999999999999999999999884

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=81.78  E-value=39  Score=32.65  Aligned_cols=138  Identities=16%  Similarity=0.096  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCCH----
Q 004249           89 PEIRRMLGDASLHYALGRY---EEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACY--KQKDS----  159 (765)
Q Consensus        89 ~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~----  159 (765)
                      ..+...+.+-...+..|+|   =+|-+.++.+              +.=|.+.++|++|++.+......  .-...    
T Consensus        10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi--------------~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~   75 (336)
T 3lpz_A           10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLV--------------AARYSKQGNWAAAVDILASVSQTLLRSGQGGSGG   75 (336)
T ss_dssp             CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCccccHHHHHHHHH--------------HHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence            3455666677778888998   6777766644              33456678888887766543221  00111    


Q ss_pred             HHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 004249          160 SLWKLIFPWLIEQGD--TTWAMSCLSEAVKADPN-DFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKL  236 (765)
Q Consensus       160 ~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  236 (765)
                      +.-..+..+|...+-  -++...-+.+++...|. .+. ..         .=..+|+.+-.+.-...-.++..+..+|..
T Consensus        76 DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~-r~---------~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~  145 (336)
T 3lpz_A           76 DLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPV-RK---------RFVKEMIDWSKKFGDYPAGDPELHHVVGTL  145 (336)
T ss_dssp             HHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHH-HH---------HHHHHHHHHHHHHSSCTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcH-HH---------HHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Confidence            112222234433321  12233333333333332 221 00         012233333333111123567888888888


Q ss_pred             HHHcCCHHHHHHHH
Q 004249          237 YQKSGQIESSVDIL  250 (765)
Q Consensus       237 ~~~~g~~~~A~~~~  250 (765)
                      |.+.+++.+|..+|
T Consensus       146 ~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          146 YVEEGEFEAAEKHL  159 (336)
T ss_dssp             HHHTTCHHHHHHHH
T ss_pred             HHccCCHHHHHHHH
Confidence            88888888888777

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	765
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-17
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-16
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-06
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-09
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	4e-08
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	2e-05
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	5e-05
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	5e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	5e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	6e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	3e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-04
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	1e-04
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-04
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	6e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	7e-04
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.001
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.004

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.2 bits (204), Expect = 1e-17
 Identities = 59/345 (17%), Positives = 125/345 (36%), Gaps = 9/345 (2%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           +S+H+   R + +       I+    L  +Y  LG V+   G   +A+  Y  A   K  
Sbjct: 40  SSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
               +  +   L+  GD   A+     A++ +P+ + ++  L +L   LG  + A   Y 
Sbjct: 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159

Query: 218 QMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMN 277
           + ++  P    A      ++   G+I  ++   E  +   P   D      L ++L +  
Sbjct: 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD--AYINLGNVLKEAR 217

Query: 278 AYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAE 337
            +DR +        +  +   +   L       + + G  D A                +
Sbjct: 218 IFDRAVAAYLRALSLSPNHAVVHGNL----ACVYYEQGLIDLAIDTYRRAIELQ-PHFPD 272

Query: 338 SINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYK 397
           +   +A+  K +   + A   Y+   A             +A         E+++  + K
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYN--TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330

Query: 398 ALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNS 442
           AL++  +   A   LAS+L +  K +EA+      + +   + ++
Sbjct: 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.8 bits (190), Expect = 8e-16
 Identities = 31/144 (21%), Positives = 57/144 (39%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           A ++Y  G  + AI      I L+   P++Y  L       G+ A+A  CY  A      
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
            +     +     EQG+   A+    +A++  P       +LAS+  + G  Q A   Y+
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363

Query: 218 QMVQLCPENIEALKMGAKLYQKSG 241
           + +++ P   +A        ++  
Sbjct: 364 EAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (149), Expect = 9e-11
 Identities = 48/384 (12%), Positives = 113/384 (29%), Gaps = 52/384 (13%)

Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228
             + GD   A     +  + +P++  +   L+S++ +     R+A      ++  P   E
Sbjct: 9   EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE 68

Query: 229 ALKMGAKLYQKSGQIESSVDILEDYLKGHP----------------------------TE 260
           A      +Y++ GQ++ +++     L+  P                              
Sbjct: 69  AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128

Query: 261 ADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKA 320
                +  + S L  +      L+  +   L     +          G      G    A
Sbjct: 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188

Query: 321 EILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAE 380
                        +  ++   + ++ K   ++  A+  Y    + +  H    +H  +A 
Sbjct: 189 IHHFEKA-VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV--VHGNLAC 245

Query: 381 CSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYV 440
                   + +I  + +A+++     DA   LA+ L E     EA       +       
Sbjct: 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL------- 298

Query: 441 NSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIID 500
                     +      L  I + +G IE              +++      E      +
Sbjct: 299 -----RLCPTHADSLNNLANIKREQGNIEE---------AVRLYRKALEVFPEFAAAHSN 344

Query: 501 LCKTLASLHRYEDAIKIINLILKL 524
           L   L    + ++A+      +++
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRI 368

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 1e-09
 Identities = 43/234 (18%), Positives = 84/234 (35%), Gaps = 7/234 (2%)

Query: 115 HEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGD 174
            + I  +     ++  LG V +A G    A+  +  A          +  +   L E   
Sbjct: 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 218

Query: 175 TTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGA 234
              A++    A+   PN   +  +LA +Y E G    A D YR+ ++L P   +A    A
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278

Query: 235 KLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYY 294
              ++ G +  + D     L+  PT AD   ++ LA++  +    +  ++       V+ 
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADS--LNNLANIKREQGNIEEAVRLYRKALEVFP 336

Query: 295 SGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKN 348
                   L         Q G   +A +        +    A++ + + +  K 
Sbjct: 337 EFAAAHSNL----ASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKE 385

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 3e-08
 Identities = 49/341 (14%), Positives = 103/341 (30%), Gaps = 22/341 (6%)

Query: 197 FHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKG 256
             LA    + G+F+ A     Q+ +  P+N   L + + ++ +  +++ S       +K 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 257 HPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGN 316
           +P  A+      L ++  +       ++H      +                     L  
Sbjct: 63  NPLLAE--AYSNLGNVYKERGQLQEAIEHYRHALRLKPDF-------IDGYINLAAALVA 113

Query: 317 TDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHL 376
               E  + A       +              + L          L+A     N      
Sbjct: 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 173

Query: 377 KIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLE 436
            +     A  E   +I +F KA+ +  + +DA + L ++L E    + A++     +SL 
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233

Query: 437 NKYVNSDKTHAWWLNIRIKIKLCRIY--KAKGMIEGFVDMLLPLVC-----------ESS 483
             +       A     +  I L      +A  +   F D    L             E  
Sbjct: 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDC 293

Query: 484 HQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKL 524
           +         H   + +L          E+A+++    L++
Sbjct: 294 YNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 4e-07
 Identities = 39/372 (10%), Positives = 90/372 (24%), Gaps = 35/372 (9%)

Query: 376 LKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSL 435
           +++A       + E +  +  +  +   DN    L L+S+  +  + + +    T  +  
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 436 ENKYVNS---------DKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQE 486
                 +         ++          +  L                L+         +
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 487 ETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCN 546
              +  ++   +  +   L +L +    ++             P        LG      
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182

Query: 547 TTDPKLWFDGVRFMVKLHPHRLTTWNRYYKLVSRFEKIFSKHAKLLRNVRAKYRDFVPPI 606
                      +  V L P+ L  +      V +  +IF +         +   +     
Sbjct: 183 GEIWLAIHHFEK-AVTLDPNFLDAYINLG-NVLKEARIFDRAVAAYLRALSLSPNHAVVH 240

Query: 607 IISGHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINL------------ALGV 654
                 +        A   Y  A +L P  P     +  AL               AL +
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300

Query: 655 RLQNKHQCVAQGLAFLYNN------------LRLAENSQEALYNIARAYHHVGLVSLAAS 702
              +                           L +      A  N+A      G +  A  
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360

Query: 703 YYEKVLAMYQKD 714
           +Y++ + +    
Sbjct: 361 HYKEAIRISPTF 372

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 3e-06
 Identities = 21/111 (18%), Positives = 42/111 (37%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           A+     G   EA    +  +RL     +S + L  +    GN  +A+  Y  A     +
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN 208
            ++    +   L +QG    A+    EA++  P       ++ +   E+ +
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 3/120 (2%)

Query: 169 LIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE 228
            + +G    A+  L EA+KA P D  L+     L    G+F+RA +   Q ++L PE + 
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 229 ALKMGAKLYQKSGQIESSVDILEDYLK-GHPTEADFGVIDLLASMLVQMNAYDRVLKHIE 287
                  L + +   +            G   E       +  ++ +    Y++V +   
Sbjct: 66  GASQLRHLVKAAQARKDFAQGAATAKVLGENEELT--KSLVSFNLSMVSQDYEQVSELAL 123

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 12/134 (8%), Positives = 43/134 (32%), Gaps = 1/134 (0%)

Query: 102 YALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSL 161
            + G+ ++A+ +L E I+   +  +       +    G+  +A      +     +    
Sbjct: 7   LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 66

Query: 162 WKLIFPWLIEQGDTTWAMSCLSE-AVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMV 220
              +   +             +   V  +  +        +L +   ++++ +++  Q+ 
Sbjct: 67  ASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126

Query: 221 QLCPENIEALKMGA 234
           +L  E        +
Sbjct: 127 ELRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 14/105 (13%), Positives = 28/105 (26%), Gaps = 3/105 (2%)

Query: 89  PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCY 148
             +R    +  L    G +E A   L + I+L  E       L  +  A           
Sbjct: 30  ASLRSSFIE--LLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGA 87

Query: 149 WLAACYKQ-KDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND 192
             A    + ++ +   + F   +   D         +  +     
Sbjct: 88  ATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 132

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 4e-08
 Identities = 23/148 (15%), Positives = 47/148 (31%), Gaps = 2/148 (1%)

Query: 100 LHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS 159
           L  A G Y + +  L  V  ++         LG++ +   +T+  +     +        
Sbjct: 95  LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC--SYICQ 152

Query: 160 SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQM 219
                +      +  T+ A S    A +  P++ +    LA L    G+       Y + 
Sbjct: 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212

Query: 220 VQLCPENIEALKMGAKLYQKSGQIESSV 247
           + +      A     K   K+ +    V
Sbjct: 213 IAVKFPFPAASTNLQKALSKALESRDEV 240

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 16/146 (10%), Positives = 45/146 (30%), Gaps = 1/146 (0%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALG-NTAKAMGCYWLAACYKQ 156
            ++     R E A  +  + I L       +H   ++  +L  +  + M         + 
Sbjct: 50  RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 109

Query: 157 KDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVY 216
           K+  +W      +    D +  +  +++ +  D  ++    H   +  E   +       
Sbjct: 110 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV 169

Query: 217 RQMVQLCPENIEALKMGAKLYQKSGQ 242
            Q+++    N         +   +  
Sbjct: 170 DQLLKEDVRNNSVWNQRYFVISNTTG 195

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 3/138 (2%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           A+ ++    YE AI    + I L       Y    L +        A+G    A    +K
Sbjct: 17  ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK 76

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASL--YVELGNFQRAADV 215
               +       +  G    A+      VK  P+D   K         V+   F+RA   
Sbjct: 77  YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136

Query: 216 YRQMVQLCPE-NIEALKM 232
                 +    +IE++ +
Sbjct: 137 DEHKRSVVDSLDIESMTI 154

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 17/119 (14%), Positives = 40/119 (33%)

Query: 126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEA 185
                    +    +   A+  Y  A      ++  +       +      +A+   + A
Sbjct: 11  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70

Query: 186 VKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE 244
           ++ D    K  +  A+  + LG F+ A   Y  +V++ P + +A     +  +   Q  
Sbjct: 71  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 5e-05
 Identities = 38/266 (14%), Positives = 81/266 (30%), Gaps = 12/266 (4%)

Query: 192 DFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILE 251
           D    F      ++ G+   A  ++   VQ  P+++EA +       ++ Q   ++  L 
Sbjct: 18  DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 77

Query: 252 DYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLAL-------- 303
             L+  P      +   ++     +      +    L     Y+                
Sbjct: 78  RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 137

Query: 304 --KIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHM 361
             K   G         +  E+ L A+  +  S   +    +  LF     Y         
Sbjct: 138 PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK--AVDCF 195

Query: 362 LEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAK 421
             A +   ND  L  K+        + E+++  + +AL++    I +R  L    +    
Sbjct: 196 TAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 255

Query: 422 DEEAISLLTPPMSLENKYVNSDKTHA 447
             EA+      ++++ K         
Sbjct: 256 HREAVEHFLEALNMQRKSRGPRGEGG 281

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 5e-05
 Identities = 32/313 (10%), Positives = 73/313 (23%), Gaps = 33/313 (10%)

Query: 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSS 160
               G    A+ +    ++ + +   ++  LG           A+         K  + +
Sbjct: 29  RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT 88

Query: 161 LWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMV 220
               +      +     A   L + ++  P    L           G             
Sbjct: 89  ALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP---------- 138

Query: 221 QLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYD 280
                     K                ++    ++  PT  D  V   L  +      YD
Sbjct: 139 ---------SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD 189

Query: 281 RVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESIN 340
           + +        V  +                +  GN  +  +       E    +  S  
Sbjct: 190 KAVDCFTAALSVRPNDYL-----LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 244

Query: 341 EIADLFKNRELYSTALKYYH----MLEANAGVHNDGC-----LHLKIAECSLALKEREKS 391
            +     N   +  A++++     M   + G   +G      +   +      L + +  
Sbjct: 245 NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304

Query: 392 IIYFYKALQILED 404
                + L  L  
Sbjct: 305 GAADARDLSTLLT 317

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 43.3 bits (100), Expect = 6e-05
 Identities = 22/145 (15%), Positives = 47/145 (32%), Gaps = 2/145 (1%)

Query: 100 LHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGN--TAKAMGCYWLAACYKQK 157
             Y  GR + A   L    + +   P     L L    L      + +  ++  +  +Q 
Sbjct: 114 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW 173

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
             ++ +     + EQ       +  ++      +  +  F+L   Y+ LG+   A  +++
Sbjct: 174 GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK 233

Query: 218 QMVQLCPENIEALKMGAKLYQKSGQ 242
             V     N    +         GQ
Sbjct: 234 LAVANNVHNFVEHRYALLELSLLGQ 258

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 31/238 (13%), Positives = 67/238 (28%), Gaps = 11/238 (4%)

Query: 182 LSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSG 241
           L+     D    +L +    LY  LG    A + + Q + + P+  E          ++G
Sbjct: 26  LASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 85

Query: 242 QIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLL 301
             +++ +  +  L+  PT             L            +      +Y       
Sbjct: 86  NFDAAYEAFDSVLELDPTYNYA--HLNRGIALYYGGRDKLAQDDLLA----FYQDDPNDP 139

Query: 302 ALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHM 361
              +   +   +L      E+L       +  +          L    E           
Sbjct: 140 FRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGWNIVEFYLGNISEQTLMERLKADA 198

Query: 362 LEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNID----ARLTLASL 415
            +  +   +    +  + +  L+L + + +   F  A+     N      A L L+ L
Sbjct: 199 TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLL 256

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 17/163 (10%), Positives = 44/163 (26%), Gaps = 5/163 (3%)

Query: 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSS 160
            +   +Y EA +     I     +   Y    L +  +    +A+     A     +   
Sbjct: 14  LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 73

Query: 161 LWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMV 220
               +    +E      A++ L  A                  + +   +R   +  +  
Sbjct: 74  AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEER-- 131

Query: 221 QLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADF 263
                + E+          + + E  ++  +   +GH  +   
Sbjct: 132 ---RIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHI 171

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 20/170 (11%), Positives = 46/170 (27%)

Query: 131 LGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADP 190
            G          +A  CY  A       +  +       ++      A++    A++ D 
Sbjct: 10  QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69

Query: 191 NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDIL 250
              K  F L    +E+ ++  A    ++   L  E             +  + +    I 
Sbjct: 70  QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 129

Query: 251 EDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELL 300
           E  +        +    + A    ++    R  +  E    +      + 
Sbjct: 130 ERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIE 179

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 25/209 (11%), Positives = 59/209 (28%), Gaps = 26/209 (12%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELP------NSYHILGLVHDALGNTAKAMGCYWLA 151
           A+++        A     +    +++        N+Y        + GN+  A+     A
Sbjct: 44  ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA 103

Query: 152 ACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVK-------------ADPNDFKLKFH 198
                      +               +   ++A+              +     K    
Sbjct: 104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK 163

Query: 199 LASLYVELGNFQRAADVYRQMVQLCPEN-------IEALKMGAKLYQKSGQIESSVDILE 251
            A L    G +  A+D+Y ++++    N        +           +    ++   L+
Sbjct: 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223

Query: 252 DYLKGHPTEADFGVIDLLASMLVQMNAYD 280
           +     P  AD    + L S++  +N  D
Sbjct: 224 EGQSEDPNFADSRESNFLKSLIDAVNEGD 252

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 18/103 (17%), Positives = 34/103 (33%)

Query: 101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSS 160
             ++G  ++A+    E I+L+      Y      +   G+  KA          K     
Sbjct: 13  ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK 72

Query: 161 LWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLY 203
            +      L        A     E +K + N+ +LK  L ++ 
Sbjct: 73  GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 6e-04
 Identities = 20/109 (18%), Positives = 38/109 (34%)

Query: 131 LGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADP 190
            G    ++GN   A+ CY  A      +  L+        ++GD   A     + V   P
Sbjct: 9   KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 68

Query: 191 NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK 239
           +  K     A+    L  F+ A   Y + ++    N +  +    +  +
Sbjct: 69  DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 117

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 15/145 (10%), Positives = 44/145 (30%), Gaps = 19/145 (13%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
             L      ++ A+     V    +        +G ++  L N  +A   +  +    + 
Sbjct: 12  GVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH 68

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND----------------FKLKFHLAS 201
            +  +        +      A+  L EA+     +                 ++ +++A 
Sbjct: 69  LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 128

Query: 202 LYVELGNFQRAADVYRQMVQLCPEN 226
           +Y +   +++A +       +  E 
Sbjct: 129 MYAKKEEWKKAEEQLALATSMKSEP 153

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 28/321 (8%), Positives = 64/321 (19%), Gaps = 10/321 (3%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           A +    G  +EA  +    +           I+      LG      G    +    Q+
Sbjct: 19  AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATS--VLGEVLHCKGELTRSLALMQQ 76

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
              + +    W             L             +     +  +        +   
Sbjct: 77  TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 136

Query: 218 QMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMN 277
           ++          L       +   ++ SS        +     A      L    L    
Sbjct: 137 RIRAQLLWAWARLDEAEASARSGIEVLSSY----QPQQQLQCLAMLIQCSLARGDLDNAR 192

Query: 278 AYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAE 337
           +    L+++      +         +++                       + N      
Sbjct: 193 SQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 252

Query: 338 SINEIADLFKNRELYSTALKYYHMLEANAGVHND----GCLHLKIAECSLALKEREKSII 393
               IA        +  A      L  NA             L + +       +  +  
Sbjct: 253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 312

Query: 394 YFYKALQILEDNIDARLTLAS 414
               AL++          +  
Sbjct: 313 VLLDALKLANRTGFISHFVIE 333

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 10/147 (6%), Positives = 28/147 (19%), Gaps = 4/147 (2%)

Query: 98  ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK 157
           + L   L    ++         +  +                   ++   Y      + +
Sbjct: 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF----TDPNDQSAWFYHRWLLGRAE 240

Query: 158 DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYR 217
                +L             +   L E    +         L      L   +     + 
Sbjct: 241 PLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 300

Query: 218 QMVQLCPENIEALKMGAKLYQKSGQIE 244
            +  + P     L      +     + 
Sbjct: 301 TLKAVDPMRAAYLDDLRSKFLLENSVL 327

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	765
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.94
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.94
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.88
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.87
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.87
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.86
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.84
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.81
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.8
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.8
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.64
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.61
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.61
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.59
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.57
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.57
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.57
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.56
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.56
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.54
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.52
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.47
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.47
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.42
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.41
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.41
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.41
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.4
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.38
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.37
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.36
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.34
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.34
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.34
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.33
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.33
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.32
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.29
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.25
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.99
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.95
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.95
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.92
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.89
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.82
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.63
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.61
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	98.33
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.98
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.98
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.97
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.96
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	97.35
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.3
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.04

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-37  Score=319.47  Aligned_cols=386  Identities=15%  Similarity=0.110  Sum_probs=369.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Q 004249           95 LGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGD  174 (765)
Q Consensus        95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~  174 (765)
                      +..|..+++.|+|++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004249          175 TTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYL  254 (765)
Q Consensus       175 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  254 (765)
                      +++|+..+..+....|.........+......+....+...........+.........+......+....+...+.+.+
T Consensus        83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCC
Q 004249          255 KGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSD  334 (765)
Q Consensus       255 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  334 (765)
                      ...|+...  ++..+|..+...|++++|...+++++..    .|....++..+|.++...|++++|+..+.+..... +.
T Consensus       163 ~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~  235 (388)
T d1w3ba_         163 ETQPNFAV--AWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN  235 (388)
T ss_dssp             HHCTTCHH--HHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT
T ss_pred             ccCcchhH--HHHhhcccccccCcHHHHHHHHHHHHHh----CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hh
Confidence            99998876  7789999999999999999999999999    78889999999999999999999999999987766 77


Q ss_pred             hHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 004249          335 HAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLAS  414 (765)
Q Consensus       335 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  414 (765)
                      ....+..+|.++...|++++|+..|+++++.  .|+++.++..+|.++...|++++|+..++.++...|.+...+..++.
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  313 (388)
T d1w3ba_         236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN  313 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHH
Confidence            7899999999999999999999999999999  99999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhH
Q 004249          415 LLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEH  494 (765)
Q Consensus       415 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~  494 (765)
                      ++...|++++|+..++++++.+|+.            +.+++.+|.++...|++++|+..+.++++         .+|++
T Consensus       314 ~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~---------l~P~~  372 (388)
T d1w3ba_         314 IKREQGNIEEAVRLYRKALEVFPEF------------AAAHSNLASVLQQQGKLQEALMHYKEAIR---------ISPTF  372 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHTTSCTTC------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHT---------TCTTC
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCCCC
Confidence            9999999999999999999998887            67899999999999999999999999997         78999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 004249          495 RLLIIDLCKTLASLHR  510 (765)
Q Consensus       495 ~~~~~~l~~~~~~~~~  510 (765)
                      +.++..+|.+|.++|+
T Consensus       373 ~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         373 ADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            9999999999998875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=308.44  Aligned_cols=385  Identities=15%  Similarity=0.107  Sum_probs=284.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q 004249          129 HILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN  208 (765)
Q Consensus       129 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  208 (765)
                      +.+|..+++.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence            35788888889999999999999888898888888899999999999999999999998889888888899999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 004249          209 FQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIEL  288 (765)
Q Consensus       209 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  288 (765)
                      +++|+..+..+....|.........+......+....+...........+....  .....+......+....+...+.+
T Consensus        83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC--VRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH--HHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccchhhhhHHHHHH
Confidence            999999999998888888888888888888888888888888777777766655  455777777778888888888888


Q ss_pred             HHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCC
Q 004249          289 VDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGV  368 (765)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  368 (765)
                      .+..    .|....++..+|.++...|++++|...+++++... |.++.++..+|.++...|++++|+..++++...  .
T Consensus       161 ~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~  233 (388)
T d1w3ba_         161 AIET----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--S  233 (388)
T ss_dssp             HHHH----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--C
T ss_pred             hhcc----CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHH--h
Confidence            8777    56667777777777777788888877777777665 667777777777777777777777777777777  6


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCcccchhh
Q 004249          369 HNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDKTHAW  448 (765)
Q Consensus       369 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  448 (765)
                      |..+..+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++.+....|..         
T Consensus       234 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------  304 (388)
T d1w3ba_         234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH---------  304 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC---------
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCcc---------
Confidence            77777777777777777777777777777777777777777777777777777777777776665554444         


Q ss_pred             hhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCC
Q 004249          449 WLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGK  528 (765)
Q Consensus       449 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  528 (765)
                         ..++..++.++...|++++|+..+.+++.         .+|+++.++..+|.++...|++++|+..|++++++.   
T Consensus       305 ---~~~~~~l~~~~~~~~~~~~A~~~~~~al~---------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~---  369 (388)
T d1w3ba_         305 ---ADSLNNLANIKREQGNIEEAVRLYRKALE---------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---  369 (388)
T ss_dssp             ---HHHHHHHHHHHHTTTCHHHHHHHHHHHTT---------SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC---
T ss_pred             ---chhhhHHHHHHHHCCCHHHHHHHHHHHHH---------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence               34445555555555555555555555543         445555555555555555555555555555555544   


Q ss_pred             CCchHHHHHHHHhhcccccC
Q 004249          529 FPVEKEELYFLGAQIPCNTT  548 (765)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~g  548 (765)
                       |+++..+..++. ++.++|
T Consensus       370 -P~~~~a~~~lg~-~~~~~~  387 (388)
T d1w3ba_         370 -PTFADAYSNMGN-TLKEMQ  387 (388)
T ss_dssp             -TTCHHHHHHHHH-HHHHTC
T ss_pred             -CCCHHHHHHHHH-HHHHcC
Confidence             444444444444 444433

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-25  Score=224.41  Aligned_cols=278  Identities=14%  Similarity=0.064  Sum_probs=195.8

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE  205 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  205 (765)
                      ...+..|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|.++++++|+++.++..+|.++..
T Consensus        20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN   99 (323)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccc
Confidence            34456677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 004249          206 LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKH  285 (765)
Q Consensus       206 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~  285 (765)
                      .|++++|+..+++++...|...............                   ....  ........+...+.+.+|+..
T Consensus       100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~--~~~~~~~~~~~~~~~~~a~~~  158 (323)
T d1fcha_         100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG-------------------AGLG--PSKRILGSLLSDSLFLEVKEL  158 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTGGGCC------------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHhccchHHHHHhhhhhhhh-------------------cccc--cchhhHHHHHHhhHHHHHHHH
Confidence            7777777777777766666553321111000000                   0000  111222334556778888888


Q ss_pred             HHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhc
Q 004249          286 IELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEAN  365 (765)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  365 (765)
                      +.+++...+  ......++..+|.++...|++++|+..+++++... |.++.++..+|.++...|++++|+..|+++++.
T Consensus       159 ~~~al~~~p--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  235 (323)
T d1fcha_         159 FLAAVRLDP--TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL  235 (323)
T ss_dssp             HHHHHHHST--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhh--cccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHH
Confidence            888888732  22345677888888899999999999999888776 788999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHH-----------HHHHHHHHHcCCHHHHHHhc
Q 004249          366 AGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDAR-----------LTLASLLLEDAKDEEAISLL  429 (765)
Q Consensus       366 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----------~~l~~~~~~~g~~~~A~~~~  429 (765)
                        +|+++.+++.+|.++...|++++|+..|+++++++|++..++           ..++.++...|+.+.+...-
T Consensus       236 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~  308 (323)
T d1fcha_         236 --QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD  308 (323)
T ss_dssp             --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred             --hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence              899999999999999999999999999999999999877544           44555666666665554443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-25  Score=226.05  Aligned_cols=275  Identities=10%  Similarity=-0.007  Sum_probs=208.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL  169 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  169 (765)
                      +....+.+|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|.++++++|++...+..+|.++
T Consensus        18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   97 (323)
T d1fcha_          18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF   97 (323)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccc
Confidence            34446789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004249          170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDI  249 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  249 (765)
                      ...|++++|+..+++++...|...............                   ............+...+.+.+|+..
T Consensus        98 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~  158 (323)
T d1fcha_          98 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEVKEL  158 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhhHHHhccchHHHHHhhhhhhhh-------------------cccccchhhHHHHHHhhHHHHHHHH
Confidence            999999999999999999998765432211111000                   0000011111223344566777777


Q ss_pred             HHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcc
Q 004249          250 LEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHW  329 (765)
Q Consensus       250 ~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  329 (765)
                      |.+++..+|+.....++..+|.++...|++++|+..+++++..    .|....++..+|.++...|++++|+..|++++.
T Consensus       159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  234 (323)
T d1fcha_         159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV----RPNDYLLWNKLGATLANGNQSEEAVAAYRRALE  234 (323)
T ss_dssp             HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc----ccccccchhhhhhcccccccchhHHHHHHHHHH
Confidence            7777777777766666777788888888888888888888777    666777777888888888888888888888776


Q ss_pred             cCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHH-----------HHHHHHHHHHhccHHH
Q 004249          330 ENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCL-----------HLKIAECSLALKEREK  390 (765)
Q Consensus       330 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----------~~~la~~~~~~g~~~~  390 (765)
                      .. |.++.++..+|.++...|++++|+..|++++++  .|++..+           |..++.++...|+.+.
T Consensus       235 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~  303 (323)
T d1fcha_         235 LQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA  303 (323)
T ss_dssp             HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             Hh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHH
Confidence            65 777888888888888888888888888888887  6665543           3444555555554443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3e-21  Score=191.37  Aligned_cols=222  Identities=11%  Similarity=0.047  Sum_probs=194.2

Q ss_pred             CCCcHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHhccCCCCHHHH
Q 004249           85 KKVCPEIRRML-GDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGN-TAKAMGCYWLAACYKQKDSSLW  162 (765)
Q Consensus        85 ~~~~~~~~~~~-~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~p~~~~~~  162 (765)
                      ...+|+....+ ..|.++...+.+++|+..+++++.++|.+..+|..+|.++...|. +++|+.+++++++.+|++..+|
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~  115 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  115 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence            34466655544 457888899999999999999999999999999999999999874 9999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 004249          163 KLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQ  242 (765)
Q Consensus       163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  242 (765)
                      ..+|.++..+|++++|+..+.++++.+|++..+|..+|.++...|++++|+..++++++++|.+..+|..+|.++...+.
T Consensus       116 ~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~  195 (315)
T d2h6fa1         116 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  195 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             ------HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004249          243 ------IESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICH  311 (765)
Q Consensus       243 ------~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  311 (765)
                            +++|+..+.++++.+|++..  +|+.++.++...| .+++...++.++...+  ......+...++.++
T Consensus       196 ~~~~~~~~~ai~~~~~al~~~P~~~~--~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~--~~~~~~~~~~l~~~y  265 (315)
T d2h6fa1         196 YNDRAVLEREVQYTLEMIKLVPHNES--AWNYLKGILQDRG-LSKYPNLLNQLLDLQP--SHSSPYLIAFLVDIY  265 (315)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHTTTC-GGGCHHHHHHHHHHTT--TCCCHHHHHHHHHHH
T ss_pred             cchhhhhHHhHHHHHHHHHhCCCchH--HHHHHHHHHHhcC-hHHHHHHHHHHHHhCC--CcCCHHHHHHHHHHH
Confidence                  57999999999999999876  7888888765544 5788899999888733  223344444555544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.2e-21  Score=190.28  Aligned_cols=187  Identities=10%  Similarity=0.067  Sum_probs=153.7

Q ss_pred             HHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHH
Q 004249          118 IRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGD-TTWAMSCLSEAVKADPNDFKLK  196 (765)
Q Consensus       118 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~  196 (765)
                      +..+|+..+++..+|.++...+.+++|+..++++++++|.+..+|..+|.++...|. +++|+..+++++..+|++..+|
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~  115 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  115 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence            344566678888889999999999999999999999999999999999998888764 8899999999999999999999


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q 004249          197 FHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM  276 (765)
Q Consensus       197 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~  276 (765)
                      ..+|.++..+|++++|+..+.++++++|++..+|..+|.++...|++++|+..++++++.+|.+..  +|+.+|.++...
T Consensus       116 ~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~--a~~~r~~~l~~~  193 (315)
T d2h6fa1         116 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS--VWNQRYFVISNT  193 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH--HHHHHHHHHHHT
T ss_pred             HHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHH--HHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999999999999999999888876  788888887766


Q ss_pred             cc------HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 004249          277 NA------YDRVLKHIELVDLVYYSGKELLLALKIKAGIC  310 (765)
Q Consensus       277 ~~------~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~  310 (765)
                      +.      +++|+..+.+++..    .|....++..++.+
T Consensus       194 ~~~~~~~~~~~ai~~~~~al~~----~P~~~~~~~~l~~l  229 (315)
T d2h6fa1         194 TGYNDRAVLEREVQYTLEMIKL----VPHNESAWNYLKGI  229 (315)
T ss_dssp             TCSCSHHHHHHHHHHHHHHHHH----STTCHHHHHHHHHH
T ss_pred             cccchhhhhHHhHHHHHHHHHh----CCCchHHHHHHHHH
Confidence            54      45666666666666    44445555555444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=7e-22  Score=199.35  Aligned_cols=270  Identities=10%  Similarity=-0.046  Sum_probs=168.4

Q ss_pred             HHHcCC-HHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcC----------CHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249          101 HYALGR-YEEAISVLHEVIRLEEELPNSYHILGLVHDALG----------NTAKAMGCYWLAACYKQKDSSLWKLIFPWL  169 (765)
Q Consensus       101 ~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  169 (765)
                      ....+. .++|+.++++++..+|++..+|...+.++...+          ++++|+.++++++..+|++..+|..+|.++
T Consensus        38 ~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~  117 (334)
T d1dcea1          38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  117 (334)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHH
Confidence            334444 478999999999999999888877776655443          366777777777777777777777777776


Q ss_pred             HHcCC--HHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249          170 IEQGD--TTWAMSCLSEAVKADPNDFKLK-FHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESS  246 (765)
Q Consensus       170 ~~~g~--~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  246 (765)
                      ...++  +++|+..+++++..+|.+..++ ...|.++...+.+++|+..+++++..+|.+..++..+|.++...|++++|
T Consensus       118 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A  197 (334)
T d1dcea1         118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  197 (334)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             HHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHH
Confidence            66654  6777777777777777777665 35566666777777777777777777777777777777777777777776


Q ss_pred             HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHh
Q 004249          247 VDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTA  326 (765)
Q Consensus       247 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  326 (765)
                      +..+++++...|...      .....+...+..+++...+.+++..                                  
T Consensus       198 ~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~a~~~~~~~l~~----------------------------------  237 (334)
T d1dcea1         198 GPQGRLPENVLLKEL------ELVQNAFFTDPNDQSAWFYHRWLLG----------------------------------  237 (334)
T ss_dssp             SSCCSSCHHHHHHHH------HHHHHHHHHCSSCSHHHHHHHHHHS----------------------------------
T ss_pred             HHHHHHhHHhHHHHH------HHHHHHHHhcchhHHHHHHHHHHHh----------------------------------
Confidence            666655555544321      2222233344444444444444444                                  


Q ss_pred             hcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH
Q 004249          327 IHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNI  406 (765)
Q Consensus       327 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  406 (765)
                          . |.....+..++.++...|++.+|+..+.+++..  +|.+..++..+|.++...|++++|+.+|+++++++|.+.
T Consensus       238 ----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~  310 (334)
T d1dcea1         238 ----R-AEPLFRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA  310 (334)
T ss_dssp             ----C-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH
T ss_pred             ----C-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccH
Confidence                2 333334444445555555555555555555555  555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHH
Q 004249          407 DARLTLASLLL  417 (765)
Q Consensus       407 ~~~~~l~~~~~  417 (765)
                      ..|..++..+.
T Consensus       311 ~y~~~L~~~~~  321 (334)
T d1dcea1         311 AYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            55555544443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=9.9e-22  Score=198.23  Aligned_cols=254  Identities=10%  Similarity=0.000  Sum_probs=195.1

Q ss_pred             CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q 004249          139 GNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG----------DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGN  208 (765)
Q Consensus       139 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  208 (765)
                      +..++|+.++.+++..+|++..+|...+.++...+          ++.+|+.++++++..+|+++.++..+|.++...++
T Consensus        43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~  122 (334)
T d1dcea1          43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE  122 (334)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred             cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcc
Confidence            34579999999999999999998877776655433          36677777777777777777777777777766554


Q ss_pred             --HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 004249          209 --FQRAADVYRQMVQLCPENIEAL-KMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKH  285 (765)
Q Consensus       209 --~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~  285 (765)
                        +++|+..+.+++..+|.+..++ ...|.++...+.+++|+..+++++..+|.+..  +|+.+|.++...|++++|+..
T Consensus       123 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~--a~~~l~~~~~~~~~~~~A~~~  200 (334)
T d1dcea1         123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS--SWHYRSCLLPQLHPQPDSGPQ  200 (334)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH--HHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHhcCHHHHHHH
Confidence              6777777777777777776664 35566777777777777777777777777655  666777777777777666655


Q ss_pred             HHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhc
Q 004249          286 IELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEAN  365 (765)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  365 (765)
                      +.+++..                                      . +....    ....+...+..+++...+.+++..
T Consensus       201 ~~~~~~~--------------------------------------~-~~~~~----~~~~~~~l~~~~~a~~~~~~~l~~  237 (334)
T d1dcea1         201 GRLPENV--------------------------------------L-LKELE----LVQNAFFTDPNDQSAWFYHRWLLG  237 (334)
T ss_dssp             CSSCHHH--------------------------------------H-HHHHH----HHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred             HHHhHHh--------------------------------------H-HHHHH----HHHHHHHhcchhHHHHHHHHHHHh
Confidence            5554444                                      1 11111    112233345566788888888888


Q ss_pred             cCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccc
Q 004249          366 AGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKY  439 (765)
Q Consensus       366 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  439 (765)
                        .|.....+..++.++...|++.+|+..+.+++..+|.+..++..+|.++...|++++|+++++++++.+|..
T Consensus       238 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~  309 (334)
T d1dcea1         238 --RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR  309 (334)
T ss_dssp             --CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred             --CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc
Confidence              888888899999999999999999999999999999999999999999999999999999999999999865

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=4.2e-20  Score=178.93  Aligned_cols=155  Identities=14%  Similarity=0.094  Sum_probs=125.1

Q ss_pred             CHHHHHHHHHHHHHh----hCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004249          106 RYEEAISVLHEVIRL----EEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSC  181 (765)
Q Consensus       106 ~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  181 (765)
                      +.+.|+..+++++..    +|..+.+++.+|.+|...|++++|+..|++++.++|+++.+|..+|.++...|++++|+..
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            344556666666654    3334568888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249          182 LSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTE  260 (765)
Q Consensus       182 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  260 (765)
                      |++++..+|+++.++..+|.++...|++++|+..|+++++.+|.+......++..+...+..+.+...........+..
T Consensus        94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (259)
T d1xnfa_          94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ  172 (259)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred             hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence            9999999999999999999999999999999999999999999888888788877777777666665555555544443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=8.2e-18  Score=171.42  Aligned_cols=301  Identities=12%  Similarity=0.011  Sum_probs=186.2

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDS-----SLWKLIFPWLIEQGDTTWAMSCLSEAVKADPN------DFK  194 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~  194 (765)
                      +.....|.++...|++++|+..+++++...|.+.     .++..+|.++...|++++|+..|++++...+.      ...
T Consensus        13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   92 (366)
T d1hz4a_          13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   92 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence            3444445555555555555555555555444431     23444555555555555555555555544221      123


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC---H
Q 004249          195 LKFHLASLYVELGNFQRAADVYRQMVQLCPE--------NIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD---F  263 (765)
Q Consensus       195 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~  263 (765)
                      ++..++.++...|++..|...+.+++...+.        ....+..+|.++...|+++.+...+.+++...+....   .
T Consensus        93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  172 (366)
T d1hz4a_          93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  172 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence            4455566666666666666666666543211        1234556677777777777777777777766554332   2


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCC---ccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCC---CChHH
Q 004249          264 GVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKE---LLLALKIKAGICHIQLGNTDKAEILLTAIHWENV---SDHAE  337 (765)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~  337 (765)
                      ..+...+..+...+.+.++...+.++.........   ....++...+.++...|++++|...+.+++...+   +....
T Consensus       173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  252 (366)
T d1hz4a_         173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  252 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence            24456677777777777777777777766443222   2233456667778888888888888888765432   23345


Q ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCC---------
Q 004249          338 SINEIADLFKNRELYSTALKYYHMLEAN----AGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILED---------  404 (765)
Q Consensus       338 ~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------  404 (765)
                      .+..+|.++...|++++|+..+++++..    ...|....++..+|.+|...|++++|+..+++++++.+.         
T Consensus       253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~  332 (366)
T d1hz4a_         253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI  332 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHH
Confidence            6777888999999999999999888743    113555678889999999999999999999999887542         


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHH
Q 004249          405 NIDARLTLASLLLEDAKDEEAI  426 (765)
Q Consensus       405 ~~~~~~~l~~~~~~~g~~~~A~  426 (765)
                      .......+...+...++.+++.
T Consensus       333 ~~~~~~~~~~~l~~~~~l~e~e  354 (366)
T d1hz4a_         333 EGEAMAQQLRQLIQLNTLPELE  354 (366)
T ss_dssp             THHHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHHHHHHHhcCCChHHH
Confidence            1223333444455556555554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2e-17  Score=168.52  Aligned_cols=273  Identities=13%  Similarity=0.004  Sum_probs=229.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc-----hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------HHH
Q 004249           93 RMLGDASLHYALGRYEEAISVLHEVIRLEEELP-----NSYHILGLVHDALGNTAKAMGCYWLAACYKQKD------SSL  161 (765)
Q Consensus        93 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~  161 (765)
                      ....+|.+++..|++++|+..+++++...|.+.     .++..+|.++...|++++|+..|++++...+..      ..+
T Consensus        14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   93 (366)
T d1hz4a_          14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   93 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            344578999999999999999999999999874     478889999999999999999999998865332      356


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-----HH
Q 004249          162 WKLIFPWLIEQGDTTWAMSCLSEAVKADP--------NDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN-----IE  228 (765)
Q Consensus       162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~  228 (765)
                      +..++.++...|++..|...+.+++...+        .....+..+|.++...|+++.|...+.+++...+..     ..
T Consensus        94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  173 (366)
T d1hz4a_          94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  173 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence            77899999999999999999999987522        123567789999999999999999999999877654     45


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHH
Q 004249          229 ALKMGAKLYQKSGQIESSVDILEDYLKGHPTEAD-----FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLAL  303 (765)
Q Consensus       229 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  303 (765)
                      ++...+..+...+++.++...+.++....+....     ..++..++.++...|++++|...+++++...+...+.....
T Consensus       174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  253 (366)
T d1hz4a_         174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  253 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence            6788899999999999999999998876554332     23466788899999999999999999887755555566677


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHhhcc-----cCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhc
Q 004249          304 KIKAGICHIQLGNTDKAEILLTAIHW-----ENVSDHAESINEIADLFKNRELYSTALKYYHMLEAN  365 (765)
Q Consensus       304 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  365 (765)
                      +..+|.++...|++++|...+++++.     ...+....++..+|.++...|++++|+..+++++.+
T Consensus       254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            88899999999999999999999763     223556778999999999999999999999999887

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.4e-18  Score=168.13  Aligned_cols=150  Identities=13%  Similarity=0.016  Sum_probs=121.8

Q ss_pred             CCHHHHHHHHHHHhccCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 004249          139 GNTAKAMGCYWLAACYKQ----KDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAAD  214 (765)
Q Consensus       139 g~~~~A~~~~~~a~~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  214 (765)
                      ++.+.|+..+.+++...+    ....+++.+|.+|...|++++|+..|++++.++|+++.++..+|.++...|++++|+.
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            345667777777776533    3446888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 004249          215 VYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVD  290 (765)
Q Consensus       215 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  290 (765)
                      .|+++++++|+++.++..+|.++...|++++|+..|+++++.+|.+..  ....++..+...+..+.+........
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF--RSLWLYLAEQKLDEKQAKEVLKQHFE  166 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHH--HHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999988765  34456666666665555444444433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1e-15  Score=125.86  Aligned_cols=113  Identities=16%  Similarity=0.081  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI  170 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  170 (765)
                      +..+..+|..++..|+|++|+..|+++++.+|+++.+|..+|.++..+|++++|+..+.+++.++|+++.+|+.+|.++.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            45667788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 004249          171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLY  203 (765)
Q Consensus       171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  203 (765)
                      .+|++++|+..|+++++.+|+++.++..++.+.
T Consensus        83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          83 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            999999999999999999999888888887764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=6e-15  Score=133.27  Aligned_cols=134  Identities=12%  Similarity=0.124  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL  169 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  169 (765)
                      ++..++.+|..++..|+|++|++.|.++   .|.++.+|+.+|.+|..+|++++|+..|+++++++|+++.+|..+|.++
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~   80 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            4456677888888888888888888763   5566788888888888888888888888888888888888888888888


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCC----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 004249          170 IEQGDTTWAMSCLSEAVKADPND----------------FKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN  226 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  226 (765)
                      ..+|++++|+..|++++...+.+                ..+++.+|.++...|++++|++.+.+++...|+.
T Consensus        81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            88888888888888888764432                3556677777777777777777777777776653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.2e-14  Score=127.30  Aligned_cols=124  Identities=19%  Similarity=0.090  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI  170 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  170 (765)
                      +..+..+|..+++.|+|++|+..|+++++.+|+++.+|..+|.++..+|++++|+..|+++++++|++..+|..+|.++.
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            35566778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HhCCHHHHHH
Q 004249          171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV--ELGNFQRAAD  214 (765)
Q Consensus       171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~g~~~~A~~  214 (765)
                      .+|++++|+.++++++.++|+++.++..++.+..  ..+.+++|+.
T Consensus        90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888888888888888888887777666543  3333444443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=8.8e-15  Score=120.11  Aligned_cols=110  Identities=18%  Similarity=0.098  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 004249          128 YHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG  207 (765)
Q Consensus       128 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  207 (765)
                      +...|..++..|++++|+..|.+++..+|.++.+|..+|.++..+|++++|+..+.+++.++|+++.+++.+|.++..+|
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            44567778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004249          208 NFQRAADVYRQMVQLCPENIEALKMGAKLY  237 (765)
Q Consensus       208 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~  237 (765)
                      ++++|+..|+++++.+|+++.++..++.+.
T Consensus        86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          86 RFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            888888888888888888887777776653

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.4e-13  Score=135.48  Aligned_cols=223  Identities=9%  Similarity=-0.053  Sum_probs=176.5

Q ss_pred             HHHHHHHHHHHHHhhCCCchHHHHHHHHHHHc--------------CCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHH
Q 004249          107 YEEAISVLHEVIRLEEELPNSYHILGLVHDAL--------------GNTAKAMGCYWLAACY-KQKDSSLWKLIFPWLIE  171 (765)
Q Consensus       107 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~a~~~-~p~~~~~~~~la~~~~~  171 (765)
                      .+.+..+|++++...|.++.+|+..+..+...              +..++|...|++++.. .|.+...|..++.....
T Consensus        32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~  111 (308)
T d2onda1          32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            45677789999999999999998887765433              3457888889998874 67888888888899999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHH
Q 004249          172 QGDTTWAMSCLSEAVKADPNDF-KLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQ-KSGQIESSVDI  249 (765)
Q Consensus       172 ~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~  249 (765)
                      .|+++.|...|++++...|.+. .+|...+......|+++.|..+|.++++..|.+...+...+.... ..|+.+.|..+
T Consensus       112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i  191 (308)
T d2onda1         112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  191 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHH
Confidence            9999999999999998888664 468888888888899999999999999998888888888887654 45788889999


Q ss_pred             HHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcc
Q 004249          250 LEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHW  329 (765)
Q Consensus       250 ~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  329 (765)
                      |++++...|.++.  .|..++..+...|+++.|..+|++++...+.+......++..........|+.+.+..+++++..
T Consensus       192 ~e~~l~~~p~~~~--~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         192 FELGLKKYGDIPE--YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHHTTCHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhHH--HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999988888765  67788888888899999999999988873332233445566666666677888888877777654


Q ss_pred             cC
Q 004249          330 EN  331 (765)
Q Consensus       330 ~~  331 (765)
                      ..
T Consensus       270 ~~  271 (308)
T d2onda1         270 AF  271 (308)
T ss_dssp             HT
T ss_pred             HC
Confidence            43

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=4.5e-14  Score=137.77  Aligned_cols=199  Identities=11%  Similarity=0.024  Sum_probs=109.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 004249          166 FPWLIEQGDTTWAMSCLSEAVKAD------PNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPEN------IEALKMG  233 (765)
Q Consensus       166 a~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l  233 (765)
                      |.+|...|++++|+.+|.+++.+.      +....++..+|.+|...|++++|+..|++++.+.+..      ..++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            445555555555555555555441      1112445556666666666666666666665554333      3445566


Q ss_pred             HHHHHH-cCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCC---ccHHHHH
Q 004249          234 AKLYQK-SGQIESSVDILEDYLKGHPTEAD----FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKE---LLLALKI  305 (765)
Q Consensus       234 a~~~~~-~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~  305 (765)
                      |.++.. .|++++|+..|++++++.+....    ..++..+|.++...|++++|+..|++++...+....   .....+.
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence            666544 46666666666666655433222    224556677777777777777777776665332211   1123345


Q ss_pred             HHHHHHHhcCChhHHHHHHHhhcccCCCCh-----HHHHHHHHHHHHc--cccHHHHHHHHHHHHhc
Q 004249          306 KAGICHIQLGNTDKAEILLTAIHWENVSDH-----AESINEIADLFKN--RELYSTALKYYHMLEAN  365 (765)
Q Consensus       306 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~  365 (765)
                      ..+.++...|++..|...++++.... |..     ......+...+..  .+.+++|+..|+++..+
T Consensus       204 ~~~~~~l~~~d~~~A~~~~~~~~~~~-~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l  269 (290)
T d1qqea_         204 KKGLCQLAATDAVAAARTLQEGQSED-PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL  269 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhC-CCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            66667777777777777777776554 221     1233344444432  34577777777665554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=4.5e-14  Score=137.75  Aligned_cols=199  Identities=11%  Similarity=0.032  Sum_probs=112.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhccC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHH
Q 004249          132 GLVHDALGNTAKAMGCYWLAACYK------QKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPND------FKLKFHL  199 (765)
Q Consensus       132 ~~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l  199 (765)
                      |.+|...|++++|+.+|.+++.+.      +....++..+|.+|...|++++|+.++++++.+.+..      ..++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            566666666666666666666542      1122456666777777777777777777666653322      3455666


Q ss_pred             HHHHHH-hCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH-----HHHH
Q 004249          200 ASLYVE-LGNFQRAADVYRQMVQLCPEN------IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADF-----GVID  267 (765)
Q Consensus       200 a~~~~~-~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~~  267 (765)
                      |.++.. .|++++|+..|++++.+.+..      ..++..+|.++...|++++|+..|++++...|.....     ..+.
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence            666644 467777777777766553221      3346666777777777777777777777666555431     1234


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHhcCCCC-ccHHHHHHHHHHHHh--cCChhHHHHHHHhhccc
Q 004249          268 LLASMLVQMNAYDRVLKHIELVDLVYYSGKE-LLLALKIKAGICHIQ--LGNTDKAEILLTAIHWE  330 (765)
Q Consensus       268 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~  330 (765)
                      ..+.++...|++..|...++++.+..+.... ........++.++..  .+.+++|+..|.++.+.
T Consensus       204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l  269 (290)
T d1qqea_         204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL  269 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            5566666667777777777766655221100 011222333333332  23467777777766443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.7e-14  Score=124.16  Aligned_cols=123  Identities=15%  Similarity=0.097  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 004249          127 SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL  206 (765)
Q Consensus       127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  206 (765)
                      .+...|..++..|+|++|+.+|+++++++|+++.+|..+|.++..+|++++|+..|+++++.+|+++.++..+|.++...
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence            34556778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCCHHHHHHH
Q 004249          207 GNFQRAADVYRQMVQLCPENIEALKMGAKLYQ--KSGQIESSVDI  249 (765)
Q Consensus       207 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~g~~~~A~~~  249 (765)
                      |++++|+..+++++.+.|+++.++..++.+..  ..+.+++|+..
T Consensus        92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            88888888888888888888777766665533  33344555443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=4.7e-13  Score=131.72  Aligned_cols=221  Identities=8%  Similarity=-0.026  Sum_probs=159.9

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHH--------------HhCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC
Q 004249          178 AMSCLSEAVKADPNDFKLKFHLASLYV--------------ELGNFQRAADVYRQMVQL-CPENIEALKMGAKLYQKSGQ  242 (765)
Q Consensus       178 A~~~~~~al~~~p~~~~~~~~la~~~~--------------~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~  242 (765)
                      +..+|++|+...|.++.+|+..+..+.              ..+..++|...|+++++. .|.+...+..++.++...|+
T Consensus        35 v~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~  114 (308)
T d2onda1          35 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK  114 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccc
Confidence            344455555555555555544444332              223456777778887764 56777777777888888888


Q ss_pred             HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH-HhcCChhHHH
Q 004249          243 IESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICH-IQLGNTDKAE  321 (765)
Q Consensus       243 ~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~  321 (765)
                      ++.|...|++++...|.+.. .+|..++....+.|+++.|..+|+++++.    .+.....+...+... ...|+.+.|.
T Consensus       115 ~~~a~~i~~~~l~~~~~~~~-~~w~~~~~~~~~~~~~~~ar~i~~~al~~----~~~~~~~~~~~a~~e~~~~~~~~~a~  189 (308)
T d2onda1         115 YEKVHSIYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMIFKKARED----ARTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HHHHHHHHHHHHTSSSSCTH-HHHHHHHHHHHHHHCHHHHHHHHHHHHTS----TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhccCHHHHH
Confidence            88888888888877776543 25667777777888888888888887776    555566666666543 3457788888


Q ss_pred             HHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCC----HHHHHHHHHHHHHhccHHHHHHHHHH
Q 004249          322 ILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEANAGVHND----GCLHLKIAECSLALKEREKSIIYFYK  397 (765)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~  397 (765)
                      .+|+.++... |.++..+...+..+...|+++.|..+|++++..  .|.+    ..+|..........|+.+.+..++++
T Consensus       190 ~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~--~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r  266 (308)
T d2onda1         190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS--GSLPPEKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS--SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            8888887766 777888999999999999999999999999887  4433    35777778888888999999999999


Q ss_pred             HHHHcCCCH
Q 004249          398 ALQILEDNI  406 (765)
Q Consensus       398 al~~~p~~~  406 (765)
                      +.+..|...
T Consensus       267 ~~~~~~~~~  275 (308)
T d2onda1         267 RFTAFREEY  275 (308)
T ss_dssp             HHHHTTTTT
T ss_pred             HHHHCcccc
Confidence            999888764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.3e-13  Score=124.23  Aligned_cols=130  Identities=14%  Similarity=0.055  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 004249          128 YHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG  207 (765)
Q Consensus       128 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  207 (765)
                      ++..|..+...|++++|+..|.++   .|.++.+|+.+|.++..+|++++|+..|+++++++|+++.++..+|.++..+|
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g   84 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE   84 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence            346688999999999999999864   55678899999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 004249          208 NFQRAADVYRQMVQLCPEN----------------IEALKMGAKLYQKSGQIESSVDILEDYLKGHPTE  260 (765)
Q Consensus       208 ~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  260 (765)
                      ++++|+..|++++...|.+                ..+++.+|.++...|++++|++.+.+++...|+.
T Consensus        85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            9999999999998876543                3667888888888888888888888888887764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=6.2e-15  Score=135.65  Aligned_cols=107  Identities=12%  Similarity=0.043  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 004249           89 PEIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPW  168 (765)
Q Consensus        89 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~  168 (765)
                      |++..+...|..++..|+|++|+..|++++..+|.++.+|..+|.+|...|++++|+..|.++++++|+++.+|+.+|.+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence            55667778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 004249          169 LIEQGDTTWAMSCLSEAVKADPNDFKL  195 (765)
Q Consensus       169 ~~~~g~~~~A~~~~~~al~~~p~~~~~  195 (765)
                      +..+|++++|+..|++++.++|.+...
T Consensus        82 ~~~l~~~~~A~~~~~~al~l~p~~~~~  108 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAYSLAKEQRLN  108 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence            888888888888888888877654433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1e-14  Score=153.65  Aligned_cols=230  Identities=15%  Similarity=0.096  Sum_probs=149.2

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004249          177 WAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKG  256 (765)
Q Consensus       177 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  256 (765)
                      +|+++|++|+.+.|+.++++..+|.++..+|++++|   |++++..+|+....+...+.+.  ...+..+++.+++..+.
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence            577777777777777777777777777777777765   6777777776554433222222  12355677777776654


Q ss_pred             CCCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCCh
Q 004249          257 HPTEAD-FGVIDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDH  335 (765)
Q Consensus       257 ~p~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  335 (765)
                      ...... ......++.+....+.|+.|+..+.+....    .+.....+..+|..+...|+.++|...+.+++...   .
T Consensus        79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~  151 (497)
T d1ya0a1          79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV----DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C  151 (497)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------------CCHHHHHH---H
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H
Confidence            432222 111223455556677777777777777766    55666777888888888888888888888776433   2


Q ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004249          336 AESINEIADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASL  415 (765)
Q Consensus       336 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  415 (765)
                      ..++..+|.++...|++++|+.+|++++.+  .|+++..+..+|.++...|+..+|+.+|.+++...|..+.++..|+.+
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~  229 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            467889999999999999999999999999  999999999999999999999999999999999999999999999999


Q ss_pred             HHHcC
Q 004249          416 LLEDA  420 (765)
Q Consensus       416 ~~~~g  420 (765)
                      +.+..
T Consensus       230 ~~~~~  234 (497)
T d1ya0a1         230 LSKAL  234 (497)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            87654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=6.5e-14  Score=128.65  Aligned_cols=103  Identities=15%  Similarity=0.112  Sum_probs=75.2

Q ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249          125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYV  204 (765)
Q Consensus       125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  204 (765)
                      +..+...|..++..|+|++|+..|.+++.++|.++.+|..+|.+|...|++++|+..|+++++++|+++.+|+.+|.++.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            44566677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCH
Q 004249          205 ELGNFQRAADVYRQMVQLCPENI  227 (765)
Q Consensus       205 ~~g~~~~A~~~~~~al~~~p~~~  227 (765)
                      .+|++++|+..|++++.+.|++.
T Consensus        84 ~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHhCcccH
Confidence            77777777777777777666443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.9e-14  Score=151.48  Aligned_cols=226  Identities=8%  Similarity=-0.092  Sum_probs=151.4

Q ss_pred             HHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 004249          109 EAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKA  188 (765)
Q Consensus       109 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  188 (765)
                      +|+++|++++...|+.++++..+|.++..+|++++|   |++++..+|+....+...+.+.  ...+..++..+++..+.
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence            788999999999999999999999999999999876   8899988887666554333332  22356778888877765


Q ss_pred             C--CCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHH
Q 004249          189 D--PNDFK-LKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGV  265 (765)
Q Consensus       189 ~--p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  265 (765)
                      .  ++... ....++.+....+.|+.|+..+.+++...|.+...+..+|.++...|++++|+..+.+++..+|.    .+
T Consensus        79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~----~~  154 (497)
T d1ya0a1          79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ----HC  154 (497)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHH----HH
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH----HH
Confidence            3  22222 22334566667788888998888888888888888899999999999999999988888877653    26


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHH
Q 004249          266 IDLLASMLVQMNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADL  345 (765)
Q Consensus       266 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~  345 (765)
                      +..+|.++...|++++|+.+|++++..    .|.....+..+|.++...|+..+|+.+|.+++... +..+.++.+++.+
T Consensus       155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l----~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~  229 (497)
T d1ya0a1         155 LVHLGDIARYRNQTSQAESYYRHAAQL----VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHH----CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence            778899999999999999999999998    77888888888888888888888888888887766 5678888888877


Q ss_pred             HHc
Q 004249          346 FKN  348 (765)
Q Consensus       346 ~~~  348 (765)
                      +.+
T Consensus       230 ~~~  232 (497)
T d1ya0a1         230 LSK  232 (497)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.2e-12  Score=115.33  Aligned_cols=135  Identities=13%  Similarity=0.088  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI  170 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  170 (765)
                      +..+...|..++..|+|++|+..|++++...|..........          .....+         ...++..+|.+|.
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~----------~~~~~~---------~~~~~~nla~~y~   73 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA----------QKAQAL---------RLASHLNLAMCHL   73 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHH----------HHHHHH---------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHH----------hhhchh---------HHHHHHHHHHHHH
Confidence            445567899999999999999999999998775442110000          000000         0123455666666


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 004249          171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIE  244 (765)
Q Consensus       171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  244 (765)
                      .+|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+....+...
T Consensus        74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  147 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL  147 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666555444443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.42  E-value=5.3e-13  Score=108.16  Aligned_cols=93  Identities=16%  Similarity=0.125  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 004249           94 MLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG  173 (765)
Q Consensus        94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  173 (765)
                      .+..|..+++.|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.+|..+|.+|...|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            35566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CHHHHHHHHHHHH
Q 004249          174 DTTWAMSCLSEAV  186 (765)
Q Consensus       174 ~~~~A~~~~~~al  186 (765)
                      ++++|++++++.+
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            7777777777654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.41  E-value=8.3e-13  Score=106.97  Aligned_cols=94  Identities=20%  Similarity=0.128  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 004249          127 SYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVEL  206 (765)
Q Consensus       127 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  206 (765)
                      .++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.++..+|.+|...
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            34566666667777777777777777767766777777777777777777777777777777776667777777777777


Q ss_pred             CCHHHHHHHHHHHH
Q 004249          207 GNFQRAADVYRQMV  220 (765)
Q Consensus       207 g~~~~A~~~~~~al  220 (765)
                      |++++|++.+++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            77777766666654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.7e-12  Score=113.02  Aligned_cols=146  Identities=15%  Similarity=0.043  Sum_probs=109.3

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE  205 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  205 (765)
                      ..+...|..++..|++++|+..|.+++...|.........          ......+         ...++.++|.+|..
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~----------~~~~~~~---------~~~~~~nla~~y~k   74 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE----------AQKAQAL---------RLASHLNLAMCHLK   74 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH----------HHHHHHH---------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHH----------Hhhhchh---------HHHHHHHHHHHHHh
Confidence            4455678888888888888888888887665432211000          0000000         12467789999999


Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHH-
Q 004249          206 LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLK-  284 (765)
Q Consensus       206 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~-  284 (765)
                      +|++++|+..+++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|+++.  +...++.+....+...+... 
T Consensus        75 ~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~--~~~~l~~~~~~~~~~~~~e~~  152 (170)
T d1p5qa1          75 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA--AKTQLAVCQQRIRRQLAREKK  152 (170)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999876  66688888777766655432 


Q ss_pred             HHHHHHHH
Q 004249          285 HIELVDLV  292 (765)
Q Consensus       285 ~~~~~~~~  292 (765)
                      .+.++...
T Consensus       153 ~~~~~f~~  160 (170)
T d1p5qa1         153 LYANMFER  160 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            34444433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.41  E-value=2.1e-12  Score=111.49  Aligned_cols=133  Identities=14%  Similarity=0.070  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL  169 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  169 (765)
                      .+..+...|..++..|+|.+|+..|++++...|......             +.........+     ...++.++|.+|
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~-------------~~~~~~~~~~~-----~~~~~~Nla~~~   77 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD-------------DQILLDKKKNI-----EISCNLNLATCY   77 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC-------------CHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh-------------hHHHHHhhhhH-----HHHHHhhHHHHH
Confidence            345566789999999999999999999998766433100             00000001111     113556677777


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 004249          170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKS  240 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  240 (765)
                      ..+|++++|+..+++++.++|.++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+..+.
T Consensus        78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777776665544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.40  E-value=7e-12  Score=110.19  Aligned_cols=135  Identities=13%  Similarity=0.114  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWL  169 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  169 (765)
                      .+..+...|..++..|+|.+|+..|++++...|........          ......         +....++.++|.||
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~----------~~~~~~---------~~~~~~~~Nla~~~   74 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK----------ESKASE---------SFLLAAFLNLAMCY   74 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH----------HHHHHH---------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh----------hhhhcc---------hhHHHHHHhHHHHH
Confidence            34556678999999999999999999999876543311000          000000         00123444566666


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 004249          170 IEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQI  243 (765)
Q Consensus       170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  243 (765)
                      ..+|++.+|+..+++++.++|.++.+++.+|.++..+|++++|+..|.+++.++|++..+...++.+....+..
T Consensus        75 ~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          75 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            66666666666666666666666666666666666666666666666666666666666666666555554443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.38  E-value=4e-12  Score=112.12  Aligned_cols=135  Identities=19%  Similarity=0.119  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 004249           94 MLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQG  173 (765)
Q Consensus        94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  173 (765)
                      ....|..++..|+|.+|+..|++++...+..                  .+..........+|....++..+|.++..+|
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~   91 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS------------------RAAAEDADGAKLQPVALSCVLNIGACKLKMS   91 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------HHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh------------------hhhhhhHHHHHhChhhHHHHHHHHHHHHhhc
Confidence            4467889999999999999999998754321                  1111122334455666777788888888888


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 004249          174 DTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESS  246 (765)
Q Consensus       174 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  246 (765)
                      ++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...++.+........++
T Consensus        92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1          92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888888888888888777666555544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.37  E-value=2.2e-10  Score=109.70  Aligned_cols=228  Identities=13%  Similarity=0.034  Sum_probs=124.0

Q ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 004249          125 PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE----QGDTTWAMSCLSEAVKADPNDFKLKFHLA  200 (765)
Q Consensus       125 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la  200 (765)
                      |.+++.+|..++..|++++|+++|+++.+.  .+..+++.||.+|..    ..++..|...++.+..  +.++.+...+|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~--~~~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--LNYSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc--ccccchhhccc
Confidence            455666666666666666666666666543  355556666666554    4455556666555544  33455555555


Q ss_pred             HHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q 004249          201 SLYVE----LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM  276 (765)
Q Consensus       201 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~  276 (765)
                      .++..    ..+.+.|...++.+....+  ..+...++..+.....                                ..
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~--------------------------------~~  123 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKV--------------------------------VT  123 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSS--------------------------------SC
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCc--------------------------------cc
Confidence            55543    2345555555555554322  3333344443332110                                01


Q ss_pred             ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh----cCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHc----
Q 004249          277 NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQ----LGNTDKAEILLTAIHWENVSDHAESINEIADLFKN----  348 (765)
Q Consensus       277 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~----  348 (765)
                      .....+...+.+....      .....+..+|.++..    ..+...+...++.+..   ..++.+.+.+|.++..    
T Consensus       124 ~~~~~a~~~~~~~~~~------~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~---~g~~~A~~~lg~~y~~g~~~  194 (265)
T d1ouva_         124 RDFKKAVEYFTKACDL------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD---LKDSPGCFNAGNMYHHGEGA  194 (265)
T ss_dssp             CCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTCSS
T ss_pred             chhHHHHHHhhhhhcc------cccchhhhhhhhhccCCCcccccccchhhhhcccc---ccccccccchhhhcccCccc
Confidence            2233333333333322      233344444554443    2344455555555432   3356677777777654    


Q ss_pred             cccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHcC
Q 004249          349 RELYSTALKYYHMLEANAGVHNDGCLHLKIAECSLA----LKEREKSIIYFYKALQILE  403 (765)
Q Consensus       349 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p  403 (765)
                      ..++++|+.+|+++.+.    +++.+++.||.+|..    .+++.+|..+|+++....+
T Consensus       195 ~~d~~~A~~~~~~aa~~----g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         195 TKNFKEALARYSKACEL----ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             ccchhhhhhhHhhhhcc----cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            55788888888877654    366777888888775    3367788888888877643

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.2e-12  Score=104.45  Aligned_cols=107  Identities=5%  Similarity=-0.147  Sum_probs=71.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHc
Q 004249           98 ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALG---NTAKAMGCYWLAACYKQKD--SSLWKLIFPWLIEQ  172 (765)
Q Consensus        98 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~  172 (765)
                      +..++..+++++|.+.|++++..+|.++.+++.+|.++...+   ++++|+..|++++..+|.+  ..+++.+|.+|...
T Consensus         6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~   85 (122)
T d1nzna_           6 LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL   85 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Confidence            445666677777777777777777777777777777776533   3445777777777666543  34666777777777


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004249          173 GDTTWAMSCLSEAVKADPNDFKLKFHLASLYV  204 (765)
Q Consensus       173 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  204 (765)
                      |++++|+.+|+++++++|++..+...++.+..
T Consensus        86 g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~  117 (122)
T d1nzna_          86 KEYEKALKYVRGLLQTEPQNNQAKELERLIDK  117 (122)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            77777777777777777777766666655543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.6e-12  Score=104.93  Aligned_cols=110  Identities=14%  Similarity=0.024  Sum_probs=89.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCC--HHHHHHHHHHHH
Q 004249          130 ILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGD---TTWAMSCLSEAVKADPND--FKLKFHLASLYV  204 (765)
Q Consensus       130 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~--~~~~~~la~~~~  204 (765)
                      .++..+...+++++|.+.|++++..+|.++.+++++|.++...++   +.+|+..|++++..+|.+  ..+++.+|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            456677788888889999999998888888888888888876544   456888888888877654  457888898888


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004249          205 ELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK  239 (765)
Q Consensus       205 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  239 (765)
                      ..|++++|+.+|+++++++|++..+...++.+..+
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            89999999999999988888888888777766544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.34  E-value=8.5e-12  Score=107.52  Aligned_cols=133  Identities=13%  Similarity=0.085  Sum_probs=102.6

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE  205 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  205 (765)
                      ..+...|..++..|+|.+|+..|.+++...|.....             .+.........+     ...++.++|.+|..
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~-------------~~~~~~~~~~~~-----~~~~~~Nla~~~~~   79 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW-------------DDQILLDKKKNI-----EISCNLNLATCYNK   79 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC-------------CCHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh-------------hhHHHHHhhhhH-----HHHHHhhHHHHHHH
Confidence            345567888888888888888888888765432210             000111111111     12467899999999


Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcc
Q 004249          206 LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNA  278 (765)
Q Consensus       206 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~  278 (765)
                      +|++++|+..++++++++|.++.+++.+|.++..+|++++|+..|+++++++|++..  +...+..+..+.++
T Consensus        80 l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~--~~~~l~~~~~kl~~  150 (153)
T d2fbna1          80 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD--IRNSYELCVNKLKE  150 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999877  56677777665544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.34  E-value=7.2e-12  Score=110.45  Aligned_cols=136  Identities=15%  Similarity=0.149  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 004249          128 YHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG  207 (765)
Q Consensus       128 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  207 (765)
                      +...|..++..|++.+|+..|.+++...+.                  ..+...........|....++.++|.++...|
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~   91 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEG------------------SRAAAEDADGAKLQPVALSCVLNIGACKLKMS   91 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhh------------------hhhhhhhHHHHHhChhhHHHHHHHHHHHHhhc
Confidence            456788899999999999999998864221                  11112223344556778889999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHH
Q 004249          208 NFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVL  283 (765)
Q Consensus       208 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~  283 (765)
                      ++++|+..+.++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..  +...++.+........++.
T Consensus        92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~--~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1          92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA--IQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999876  6778888887777666654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.33  E-value=3.9e-12  Score=108.21  Aligned_cols=119  Identities=16%  Similarity=0.238  Sum_probs=101.7

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHhhcccCCCchHHHhHHH
Q 004249          610 GHQFTMISHHQDAAREYLEAYKLLPENPLINLCVGTALINLALGVRLQNKHQCVAQGLAFLYNNLRLAENSQEALYNIAR  689 (765)
Q Consensus       610 g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~  689 (765)
                      +..+...+.|++|+..|+++++++|+++.++..+|.++...+...........+.+|+..+++..++.|++.++++++|.
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~   83 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN   83 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHH
Confidence            44567788999999999999999999999999999999987654444455566789999999999999999999999999


Q ss_pred             HHHHhch-----------HHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHhc
Q 004249          690 AYHHVGL-----------VSLAASYYEKVLAMYQKDCIIPGFPDHMEDWKPGHSDLRREAAYNLHLIYKKS  749 (765)
Q Consensus       690 ~~~~~g~-----------~~~A~~~y~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~nl~~iy~~~  749 (765)
                      +|..+|.           +++|+.+|+++++++|++                     ..+..+|+.....-
T Consensus        84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~---------------------~~~~~~L~~~~ka~  133 (145)
T d1zu2a1          84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN---------------------THYLKSLEMTAKAP  133 (145)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC---------------------HHHHHHHHHHHTHH
T ss_pred             HHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCH---------------------HHHHHHHHHHHHHH
Confidence            9998875           689999999999999965                     56777777776543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.33  E-value=1.3e-11  Score=108.36  Aligned_cols=146  Identities=13%  Similarity=0.042  Sum_probs=108.9

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE  205 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  205 (765)
                      ..+...|..++..|+|.+|+..|.+++...|.....            .... ....      .+....++.++|.+|..
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~------------~~~~-~~~~------~~~~~~~~~Nla~~~~~   76 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL------------SEKE-SKAS------ESFLLAAFLNLAMCYLK   76 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC------------CHHH-HHHH------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcc------------chhh-hhhc------chhHHHHHHhHHHHHHH
Confidence            445567777778888888888887777543321100            0000 0000      01123467789999999


Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHH-HHH
Q 004249          206 LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDR-VLK  284 (765)
Q Consensus       206 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~-A~~  284 (765)
                      +|++++|+..+++++.++|.++.+++.+|.++..+|++++|+..|++++.++|++..  +...++.+....+.+.+ ...
T Consensus        77 l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~--~~~~l~~~~~~~~~~~e~~kk  154 (168)
T d1kt1a1          77 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA--ARLQIFMCQKKAKEHNERDRR  154 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999876  66788888877776643 555


Q ss_pred             HHHHHHHH
Q 004249          285 HIELVDLV  292 (765)
Q Consensus       285 ~~~~~~~~  292 (765)
                      .+.++.+.
T Consensus       155 ~~~~~f~~  162 (168)
T d1kt1a1         155 TYANMFKK  162 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            66665554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.32  E-value=2.3e-10  Score=109.50  Aligned_cols=221  Identities=13%  Similarity=0.079  Sum_probs=166.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004249           92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDA----LGNTAKAMGCYWLAACYKQKDSSLWKLIFP  167 (765)
Q Consensus        92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  167 (765)
                      ..++..|..++..+++++|+.+|+++.+.  .++.+++.||.+|..    ..++..|..++..+...  .++.+...+|.
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~~   78 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLGN   78 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcccc
Confidence            46678889999999999999999999764  688999999999997    67999999999998764  57888888998


Q ss_pred             HHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 004249          168 WLIE----QGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE----LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQK  239 (765)
Q Consensus       168 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  239 (765)
                      ++..    ..+...|...++.+....  ...+...++..+..    ......|...+.+...  +.+...+..+|.++..
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~  154 (265)
T d1ouva_          79 LYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYDA  154 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred             ccccccccchhhHHHHHHHhhhhhhh--hhhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhcc
Confidence            8775    567899999999998754  46677777777775    4567778888877655  4667788889998886


Q ss_pred             ----cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 004249          240 ----SGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQ----MNAYDRVLKHIELVDLVYYSGKELLLALKIKAGICH  311 (765)
Q Consensus       240 ----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  311 (765)
                          ..+...+..+++.+.+.  .++.  +.+.+|.++..    ..++++|+.+|+++.+.      ....+.+.+|.+|
T Consensus       155 ~~~~~~~~~~~~~~~~~a~~~--g~~~--A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~------g~~~a~~~LG~~y  224 (265)
T d1ouva_         155 GRGTPKDLKKALASYDKACDL--KDSP--GCFNAGNMYHHGEGATKNFKEALARYSKACEL------ENGGGCFNLGAMQ  224 (265)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHT--TCHH--HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHH
T ss_pred             CCCcccccccchhhhhccccc--cccc--cccchhhhcccCcccccchhhhhhhHhhhhcc------cCHHHHHHHHHHH
Confidence                45566777777776653  2322  66778877776    45777777777777665      2455666777766


Q ss_pred             Hh----cCChhHHHHHHHhhccc
Q 004249          312 IQ----LGNTDKAEILLTAIHWE  330 (765)
Q Consensus       312 ~~----~~~~~~A~~~~~~~~~~  330 (765)
                      ..    ..++++|..+|+++...
T Consensus       225 ~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         225 YNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             HTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HcCCCCccCHHHHHHHHHHHHHC
Confidence            64    33666677777766543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.2e-11  Score=102.76  Aligned_cols=96  Identities=9%  Similarity=-0.027  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHH-------HHHHHH
Q 004249           94 MLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSS-------LWKLIF  166 (765)
Q Consensus        94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~-------~~~~la  166 (765)
                      .-..|..++..|+|++|+.+|++++..+|+++.++..+|.+|..+|++++|+..+.+++.++|.++.       ++..+|
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            3345555566666666666666666666655555555666666666666666666665555544432       233333


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcC
Q 004249          167 PWLIEQGDTTWAMSCLSEAVKAD  189 (765)
Q Consensus       167 ~~~~~~g~~~~A~~~~~~al~~~  189 (765)
                      .++...+++++|+.+|++++..+
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~~~  109 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLAEH  109 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcC
Confidence            44444444444444444444433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.29  E-value=3.9e-12  Score=108.22  Aligned_cols=113  Identities=17%  Similarity=0.139  Sum_probs=65.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004249          101 HYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMS  180 (765)
Q Consensus       101 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~  180 (765)
                      +-+.+.|++|+..|+++++.+|+++.+++.+|.++...+++..+.+                        ..+.+++|+.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e------------------------~~~~~~~Ai~   62 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD------------------------AKQMIQEAIT   62 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH------------------------HHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhH------------------------HHHHHHHHHH
Confidence            3455667777777777777777777777777777665444332221                        1122345555


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 004249          181 CLSEAVKADPNDFKLKFHLASLYVELG-----------NFQRAADVYRQMVQLCPENIEALKMGAKLY  237 (765)
Q Consensus       181 ~~~~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~  237 (765)
                      .|+++++++|+++.+++.+|.+|..+|           .+++|+.+|+++++++|++..++..++.+.
T Consensus        63 ~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          63 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence            555555555555555555555554443           256666666666666666666665555553

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.7e-11  Score=99.78  Aligned_cols=95  Identities=17%  Similarity=0.251  Sum_probs=45.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHH
Q 004249          164 LIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI-------EALKMGAKL  236 (765)
Q Consensus       164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~  236 (765)
                      .+|..++..|+|++|+.+|+++++++|+++.++..+|.+|..+|++++|+..++++++++|.+.       .++..+|.+
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~   88 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS   88 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444444444444444444444332       233344445


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCC
Q 004249          237 YQKSGQIESSVDILEDYLKGHP  258 (765)
Q Consensus       237 ~~~~g~~~~A~~~~~~~~~~~p  258 (765)
                      +...+++++|+.+|++++..+|
T Consensus        89 ~~~~~~~~~A~~~~~kal~~~~  110 (128)
T d1elra_          89 YFKEEKYKDAIHFYNKSLAEHR  110 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHhCCHHHHHHHHHHHHhcCC
Confidence            5555555555555555555443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.99  E-value=1.2e-09  Score=94.19  Aligned_cols=100  Identities=19%  Similarity=0.066  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCc------------hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 004249           90 EIRRMLGDASLHYALGRYEEAISVLHEVIRLEEELP------------NSYHILGLVHDALGNTAKAMGCYWLAACYKQK  157 (765)
Q Consensus        90 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~  157 (765)
                      .....++.|..++..|+|++|+..|++++.+.|+.+            .+|..+|.+|..+|++++|+..+++++.+.|.
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            445567789999999999999999999999888754            35666777777777777777777777654321


Q ss_pred             -----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 004249          158 -----------DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKAD  189 (765)
Q Consensus       158 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  189 (765)
                                 ...+++.+|.+|..+|++++|+..|++++++.
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~  130 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI  130 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                       12245556666666666666666666666553

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.8e-09  Score=83.58  Aligned_cols=74  Identities=11%  Similarity=-0.025  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC-------chHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004249           94 MLGDASLHYALGRYEEAISVLHEVIRLEEEL-------PNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIF  166 (765)
Q Consensus        94 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la  166 (765)
                      .+..|..++..|+|++|+..|+++++..|.+       ..++..+|.++...|++++|+..|+++++++|+++.++.+++
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~   87 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            3444555555555555555555555544432       234444444444445555555555544444444444444443


Q ss_pred             H
Q 004249          167 P  167 (765)
Q Consensus       167 ~  167 (765)
                      .
T Consensus        88 ~   88 (95)
T d1tjca_          88 Y   88 (95)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.4e-09  Score=82.89  Aligned_cols=83  Identities=14%  Similarity=0.025  Sum_probs=74.4

Q ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 004249          124 LPNSYHILGLVHDALGNTAKAMGCYWLAACYKQK-------DSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLK  196 (765)
Q Consensus       124 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  196 (765)
                      +++-++.+|.+++..|+|++|+.+|++++++.|.       ...++..+|.++...|++++|+..|+++++++|+++.++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            3567889999999999999999999999987543       357899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 004249          197 FHLASLYVEL  206 (765)
Q Consensus       197 ~~la~~~~~~  206 (765)
                      .+++.+...+
T Consensus        84 ~Nl~~~~~~l   93 (95)
T d1tjca_          84 GNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9998876544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.92  E-value=5.5e-10  Score=104.72  Aligned_cols=131  Identities=9%  Similarity=-0.043  Sum_probs=94.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 004249           98 ASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTW  177 (765)
Q Consensus        98 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~  177 (765)
                      +..++..|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++...+...+
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            45567778888888888888888888888888888888888888888888888888888888877777777766665555


Q ss_pred             HHHHHHHHHhc-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 004249          178 AMSCLSEAVKA-DPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIE  228 (765)
Q Consensus       178 A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  228 (765)
                      +...+.+.... .|.....+...+.++...|++++|...+.++.+..|..+.
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~  134 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  134 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence            54443332222 3444555666777777778888888888888777776543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.89  E-value=2.4e-09  Score=92.24  Aligned_cols=66  Identities=14%  Similarity=0.048  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 004249          194 KLKFHLASLYVELGNFQRAADVYRQMVQLCPE-----------NIEALKMGAKLYQKSGQIESSVDILEDYLKGHPT  259 (765)
Q Consensus       194 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  259 (765)
                      .++.++|.+|..+|++++|+..+++++.+.|.           ...+++++|.+|..+|++++|+..|++++++.|.
T Consensus        56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            34555666666666666666666666554321           1234566666666666666666666666665443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.82  E-value=2.8e-09  Score=99.81  Aligned_cols=127  Identities=17%  Similarity=0.019  Sum_probs=68.5

Q ss_pred             HHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 004249          135 HDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAAD  214 (765)
Q Consensus       135 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  214 (765)
                      .+..|++++|+..++++++.+|++..++..++.+++..|++++|+..|+++++.+|++..++..++.++...+...++..
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~   85 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ   85 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence            34456666666666666666666666666666666666666666666666666666665555555555554444444333


Q ss_pred             HHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 004249          215 VYRQMVQ-LCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEA  261 (765)
Q Consensus       215 ~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  261 (765)
                      .+.+... ..|.....+...+.++...|++++|...++++.+..|..+
T Consensus        86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            3222111 1233333444455555555666666666666555555543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.63  E-value=6.7e-08  Score=84.44  Aligned_cols=117  Identities=15%  Similarity=-0.004  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 004249           91 IRRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLI  170 (765)
Q Consensus        91 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  170 (765)
                      +..++..|..+...|++++|+..|.+++.+.+.........       +.+     .......+.+....++..++.++.
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~w-----~~~~r~~l~~~~~~a~~~la~~~~   78 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------FQF-----VEPFATALVEDKVLAHTAKAEAEI   78 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------STT-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------hHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556667777777777777777777777666543211100       000     001111222333455666666666


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004249          171 EQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQM  219 (765)
Q Consensus       171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  219 (765)
                      ..|++++|+.++++++..+|.+..+|..++.++...|++.+|+..|+++
T Consensus        79 ~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          79 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            6666666666666666666666666666666666666666666666665

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.61  E-value=9.9e-08  Score=83.32  Aligned_cols=117  Identities=9%  Similarity=-0.126  Sum_probs=88.7

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE  205 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  205 (765)
                      ..+...|......|++++|+..|.+++.+.+........       .+.+     .......+.+....++..++.++..
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~-------~~~w-----~~~~r~~l~~~~~~a~~~la~~~~~   79 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-------DFQF-----VEPFATALVEDKVLAHTAKAEAEIA   79 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-------TSTT-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCc-------chHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567778888888999999999999998887655321110       1111     1111222234456788889999999


Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004249          206 LGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYL  254 (765)
Q Consensus       206 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  254 (765)
                      .|++++|+..+++++..+|.+..+|..++.++...|++.+|+..|+++.
T Consensus        80 ~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          80 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998873

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=0.0024  Score=64.45  Aligned_cols=386  Identities=8%  Similarity=-0.051  Sum_probs=192.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHH--cCCHHHHHHHHHHHhccCCCCHHHHHH---HH
Q 004249           92 RRMLGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDA--LGNTAKAMGCYWLAACYKQKDSSLWKL---IF  166 (765)
Q Consensus        92 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~p~~~~~~~~---la  166 (765)
                      ...+..|...+..|++.++..+...+ +..|-  ..|...-.+...  .....+    +...++..|+.+.....   ..
T Consensus         7 r~~y~~a~~a~~~~~~~~~~~~~~~L-~dypL--~pYl~~~~l~~~~~~~~~~~----i~~Fl~~~p~~P~~~~lr~~~l   79 (450)
T d1qsaa1           7 RSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPL--YPYLEYRQITDDLMNQPAVT----VTNFVRANPTLPPARTLQSRFV   79 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTT--HHHHHHHHHHHTGGGCCHHH----HHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhhh-cCCCC--HHHHHHHHHHhccccCCHHH----HHHHHHHCCCChhHHHHHHHHH
Confidence            45677888889999999888777664 33332  222222222222  223333    34455567777754322   33


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH------------------H
Q 004249          167 PWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENI------------------E  228 (765)
Q Consensus       167 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------------------~  228 (765)
                      ..+...+++...+..+    ...|.+....+..+.+....|+...|...+..+.......+                  .
T Consensus        80 ~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~  155 (450)
T d1qsaa1          80 NELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPL  155 (450)
T ss_dssp             HHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHH
T ss_pred             HHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHH
Confidence            3455667776644433    34577788778888888888888888887776665433322                  2


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH-------------HhcC-----------CCCCCHHHHHHHHHHHHHhccHHHHHH
Q 004249          229 ALKMGAKLYQKSGQIESSVDILEDY-------------LKGH-----------PTEADFGVIDLLASMLVQMNAYDRVLK  284 (765)
Q Consensus       229 ~~~~la~~~~~~g~~~~A~~~~~~~-------------~~~~-----------p~~~~~~~~~~l~~~~~~~~~~~~A~~  284 (765)
                      .+...+......|++..|...+..+             +..+           +.+.....+...+..-....+.+.|..
T Consensus       156 ~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~  235 (450)
T d1qsaa1         156 AYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARL  235 (450)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHH
Confidence            2233344444555555554443321             0001           111111111122222233345555555


Q ss_pred             HHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHHh
Q 004249          285 HIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLEA  364 (765)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  364 (765)
                      .+...........+........++......+..+.+...+....... .. .......+......+++..+...+..+..
T Consensus       236 ~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~-~~-~~~~~w~~~~al~~~~~~~~~~~~~~l~~  313 (450)
T d1qsaa1         236 MIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-QS-TSLIERRVRMALGTGDRRGLNTWLARLPM  313 (450)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-CC-HHHHHHHHHHHHHHTCHHHHHHHHHHSCT
T ss_pred             HHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc-cc-hHHHHHHHHHHHHcCChHHHHHHHHhcCc
Confidence            55555444111111111111122222223344555555555443322 22 22222222233445566666666654432


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCCccccccCccc
Q 004249          365 NAGVHNDGCLHLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLLTPPMSLENKYVNSDK  444 (765)
Q Consensus       365 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  444 (765)
                      .  ....+...+-+|..+...|+.++|...|..+.. .+ +  .+-.|+.-  +.|..          ....+.......
T Consensus       314 ~--~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~-~--fYG~LAa~--~Lg~~----------~~~~~~~~~~~~  375 (450)
T d1qsaa1         314 E--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QR-G--FYPMVAAQ--RIGEE----------YELKIDKAPQNV  375 (450)
T ss_dssp             T--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SC-S--HHHHHHHH--HTTCC----------CCCCCCCCCSCC
T ss_pred             c--cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-CC-C--hHHHHHHH--HcCCC----------CCCCcCCCCccH
Confidence            2  233455556666666666666666666666553 12 1  12222222  12211          111111100000


Q ss_pred             chhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcccccccChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 004249          445 THAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSHQEETFNHEEHRLLIIDLCKTLASLHRYEDAIKIINLI  521 (765)
Q Consensus       445 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  521 (765)
                      ....  ....-+..+..+...|....|...+..++..        .   ++.-...++.+..+.|.++.|+....++
T Consensus       376 ~~~~--~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--------~---~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         376 DSAL--TQGPEMARVRELMYWNLDNTARSEWANLVKS--------K---SKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             CCHH--HHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C---CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHhh--hcChHHHHHHHHHHcCCchHHHHHHHHHHhC--------C---CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            1111  1122346788889999999999888777642        2   2345566788889999999999877655

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.98  E-value=7.7e-05  Score=61.01  Aligned_cols=109  Identities=16%  Similarity=0.051  Sum_probs=63.2

Q ss_pred             CHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 004249          106 RYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE----QGDTTWAMSC  181 (765)
Q Consensus       106 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~  181 (765)
                      |+++|+.+|+++.+.  .++.+.+.++.  ....++++|+.+++++.+.  .++.+.+.||.+|..    ..++.+|+.+
T Consensus         8 d~~~A~~~~~kaa~~--g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~   81 (133)
T d1klxa_           8 DLKKAIQYYVKACEL--NEMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   81 (133)
T ss_dssp             HHHHHHHHHHHHHHT--TCTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHC--CChhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHH
Confidence            566777777776654  34555555553  2334566666666666543  456666666666654    3455666666


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHh
Q 004249          182 LSEAVKADPNDFKLKFHLASLYVE----LGNFQRAADVYRQMVQL  222 (765)
Q Consensus       182 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  222 (765)
                      |+++.+.  .++.+.+.+|.+|..    ..++.+|+.+|+++.+.
T Consensus        82 ~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          82 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             Hhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            6666553  345566666666554    34566666666666554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.98  E-value=5.2e-05  Score=59.06  Aligned_cols=81  Identities=9%  Similarity=-0.094  Sum_probs=67.6

Q ss_pred             ChHHHHHHHHHHHHcc---ccHHHHHHHHHHHHhccCCCCCH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHH
Q 004249          334 DHAESINEIADLFKNR---ELYSTALKYYHMLEANAGVHNDG-CLHLKIAECSLALKEREKSIIYFYKALQILEDNIDAR  409 (765)
Q Consensus       334 ~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  409 (765)
                      ..+...+..|+++.+.   .+.++|+.+|+.++..  +|.+. +.++.+|..|.++|++++|..+++++++++|++..+.
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence            3477888999888754   5667999999999987  77664 7999999999999999999999999999999999887


Q ss_pred             HHHHHHH
Q 004249          410 LTLASLL  416 (765)
Q Consensus       410 ~~l~~~~  416 (765)
                      ...-.+.
T Consensus       111 ~L~~~Ie  117 (124)
T d2pqrb1         111 ALKSMVE  117 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.97  E-value=6.4e-05  Score=61.49  Aligned_cols=111  Identities=15%  Similarity=0.068  Sum_probs=84.0

Q ss_pred             CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hCCHHHHHH
Q 004249          139 GNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVE----LGNFQRAAD  214 (765)
Q Consensus       139 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~  214 (765)
                      .++++|+.+|+++.+..  ++.+.+.++.  ....+.++|+.+++++.+  ..++.+.+.+|.+|..    ..++.+|+.
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~--~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACE--LNSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhc--ccchhhhhhHHHhhhhccccchhhHHHHH
Confidence            36788999999888764  4555666654  345678888888888876  3578888888888876    457888888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Q 004249          215 VYRQMVQLCPENIEALKMGAKLYQK----SGQIESSVDILEDYLKGH  257 (765)
Q Consensus       215 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~  257 (765)
                      +|+++.+.  .++.+.+.+|.+|..    ..++.+|+.+|+++.+..
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            88888765  567788888888876    467888888888887654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.96  E-value=2.1e-05  Score=61.33  Aligned_cols=72  Identities=11%  Similarity=-0.030  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHH
Q 004249           93 RMLGDASLHYALG---RYEEAISVLHEVIRLEEELP-NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKL  164 (765)
Q Consensus        93 ~~~~~a~~~~~~g---~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~  164 (765)
                      ..|.-|.++....   +.++|+.+|+++++.+|.+. +.++.+|..|+++|+|++|..+++++++++|++..+...
T Consensus        37 t~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          37 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            3444444454432   33456666666665555443 555666666666666666666666666666665555433

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.093  Score=52.25  Aligned_cols=386  Identities=9%  Similarity=-0.100  Sum_probs=216.3

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHH---HHH
Q 004249          126 NSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIE--QGDTTWAMSCLSEAVKADPNDFKLKF---HLA  200 (765)
Q Consensus       126 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~---~la  200 (765)
                      ...+..+.-.+..|++..+....... .-.|-.+  |...-.+...  .....+    +...+...|+.|....   ...
T Consensus         7 r~~y~~a~~a~~~~~~~~~~~~~~~L-~dypL~p--Yl~~~~l~~~~~~~~~~~----i~~Fl~~~p~~P~~~~lr~~~l   79 (450)
T d1qsaa1           7 RSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPLYP--YLEYRQITDDLMNQPAVT----VTNFVRANPTLPPARTLQSRFV   79 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTTHH--HHHHHHHHHTGGGCCHHH----HHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhhh-cCCCCHH--HHHHHHHHhccccCCHHH----HHHHHHHCCCChhHHHHHHHHH
Confidence            45667788888999999888777664 3334222  2222222222  233333    3455666888876533   333


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh----
Q 004249          201 SLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQM----  276 (765)
Q Consensus       201 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~----  276 (765)
                      ..+...+++...+..+    ...|.+....+.++.+....|+..+|...+..+....+..+.  .+..+-..+...    
T Consensus        80 ~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~--~c~~l~~~~~~~~~lt  153 (450)
T d1qsaa1          80 NELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN--ACDKLFSVWRASGKQD  153 (450)
T ss_dssp             HHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT--HHHHHHHHHHHTTCSC
T ss_pred             HHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch--HHHHHHHHHHhcCCCC
Confidence            4556778877655443    346778888888999999999999999999888776655554  233333333332    


Q ss_pred             --------------ccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHH
Q 004249          277 --------------NAYDRVLKHIELVDLVYYSGKELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEI  342 (765)
Q Consensus       277 --------------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  342 (765)
                                    |++..|...+..+       ++...........+.   .+........... ...  .........
T Consensus       154 ~~~~~~R~~~~l~~~~~~~a~~l~~~l-------~~~~~~~~~a~~~l~---~~p~~~~~~~~~~-~~~--~~~~~~~~~  220 (450)
T d1qsaa1         154 PLAYLERIRLAMKAGNTGLVTVLAGQM-------PADYQTIASAIISLA---NNPNTVLTFARTT-GAT--DFTRQMAAV  220 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTC-------CGGGHHHHHHHHHHH---HCGGGHHHHHHHS-CCC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChhhHHHHHhhC-------ChhHHHHHHHHHHHH---hChHhHHHHHhcC-CCC--hhhhHHHHH
Confidence                          3333222222110       111111100111111   1222222222221 111  111122233


Q ss_pred             HHHHHccccHHHHHHHHHHHHhccCCCCCHHHHHHHH----HHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004249          343 ADLFKNRELYSTALKYYHMLEANAGVHNDGCLHLKIA----ECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLE  418 (765)
Q Consensus       343 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  418 (765)
                      +..-....+.+.|...+......  .+.....+....    ......+..+.|...+....... .+......++.....
T Consensus       221 ~l~rla~~d~~~a~~~l~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~w~~~~al~  297 (450)
T d1qsaa1         221 AFASVARQDAENARLMIPSLAQA--QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-QSTSLIERRVRMALG  297 (450)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHH--TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHhccChhHHHHHHHhhhhc--ccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc-cchHHHHHHHHHHHH
Confidence            33334456788888888877655  344443333222    22233456677777777666543 344443344444566


Q ss_pred             cCCHHHHHHhcCCCCCccccccCcccchhhhhhhHHHHHHHHHHHhcchhHHHHHhhHHHHhhhcc---------cc---
Q 004249          419 DAKDEEAISLLTPPMSLENKYVNSDKTHAWWLNIRIKIKLCRIYKAKGMIEGFVDMLLPLVCESSH---------QE---  486 (765)
Q Consensus       419 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------l~---  486 (765)
                      .+++..+...+..+......            ..+..+.+|..+...|+.++|...+..+... .+         |.   
T Consensus       298 ~~~~~~~~~~~~~l~~~~~~------------~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~  364 (450)
T d1qsaa1         298 TGDRRGLNTWLARLPMEAKE------------KDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPMVAAQRIGEEY  364 (450)
T ss_dssp             HTCHHHHHHHHHHSCTTGGG------------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCC
T ss_pred             cCChHHHHHHHHhcCccccc------------HHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-CChHHHHHHHHcCCCC
Confidence            78888888888765432222            2567789999999999999998888776542 12         10   


Q ss_pred             -----ccc---ChhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHhhcccccCChhhHHHHHH
Q 004249          487 -----ETF---NHEEHRLLIIDLCKTLASLHRYEDAIKIINLILKLGYGKFPVEKEELYFLGAQIPCNTTDPKLWFDGVR  558 (765)
Q Consensus       487 -----~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  558 (765)
                           .+.   ...-.....+..+..+...|+..+|...+..++...      ++.....++. +..+.|.++.|+....
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~------~~~~~~~la~-lA~~~g~~~~aI~a~~  437 (450)
T d1qsaa1         365 ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK------SKTEQAQLAR-YAFNNQWWDLSVQATI  437 (450)
T ss_dssp             CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHH-HHHHTTCHHHHHHHHH
T ss_pred             CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC------CHHHHHHHHH-HHHHCCChhHHHHHHH
Confidence                 000   111112223455677888999999999988776532      2334444444 7788999999998776


Q ss_pred             HH
Q 004249          559 FM  560 (765)
Q Consensus       559 ~~  560 (765)
                      ++
T Consensus       438 ~~  439 (450)
T d1qsaa1         438 AG  439 (450)
T ss_dssp             HT
T ss_pred             HH
Confidence            65

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.30  E-value=0.073  Score=49.95  Aligned_cols=140  Identities=17%  Similarity=0.134  Sum_probs=95.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Q 004249           95 LGDASLHYALGRYEEAISVLHEVIRLEEELPNSYHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGD  174 (765)
Q Consensus        95 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~  174 (765)
                      -.-|..+...|.|+.|..+|...        .-+-.+..++...++++.|...+.+.     +++..|..+...+.....
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e   84 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE   84 (336)
T ss_dssp             -----------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhC--------CCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcH
Confidence            34467788999999999999753        22445667888999999999988876     577889888888888777


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004249          175 TTWAMSCLSEAVKADPNDFKLKFHLASLYVELGNFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILED  252 (765)
Q Consensus       175 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  252 (765)
                      ..-|..+ ...   ...+++-.......|...|.+++.+.+++.++...+.+...+..++.+|.+.+ .++-++.++.
T Consensus        85 ~~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~  157 (336)
T d1b89a_          85 FRLAQMC-GLH---IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLEL  157 (336)
T ss_dssp             HHHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred             HHHHHHH-HHH---hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHh
Confidence            6554221 111   12355666678888889999999999999998888888888888888887654 4444444443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.04  E-value=0.13  Score=48.09  Aligned_cols=273  Identities=13%  Similarity=0.020  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 004249          128 YHILGLVHDALGNTAKAMGCYWLAACYKQKDSSLWKLIFPWLIEQGDTTWAMSCLSEAVKADPNDFKLKFHLASLYVELG  207 (765)
Q Consensus       128 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  207 (765)
                      .-..|..+.+.|.|+.|..+|...-.        +..+..++...++++.|..++.+.     +++.+|..+...+....
T Consensus        17 ~~~i~~~c~~~~lye~A~~lY~~~~d--------~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~   83 (336)
T d1b89a_          17 IQQVGDRCYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGK   83 (336)
T ss_dssp             ------------CTTTHHHHHHHTTC--------HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCCC--------HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCc
Confidence            34567888899999999999985422        445667889999999999988765     46889999999888887


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 004249          208 NFQRAADVYRQMVQLCPENIEALKMGAKLYQKSGQIESSVDILEDYLKGHPTEADFGVIDLLASMLVQMNAYDRVLKHIE  287 (765)
Q Consensus       208 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  287 (765)
                      ...-|..+ ...   ...+++-...+...|...|.+++.+.+++.++...+.+..  .+..++.+|.+.+ .++-.+.++
T Consensus        84 e~~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~--~~~~L~~lyak~~-~~kl~e~l~  156 (336)
T d1b89a_          84 EFRLAQMC-GLH---IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG--MFTELAILYSKFK-PQKMREHLE  156 (336)
T ss_dssp             CHHHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHH--HHHHHHHHHHTTC-HHHHHHHHH
T ss_pred             HHHHHHHH-HHH---hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchH--HHHHHHHHHHHhC-hHHHHHHHH
Confidence            77654221 111   1234555667788899999999999999999876655544  6778888887764 455555554


Q ss_pred             HHHHHhcCC----CCccHHHHHHHHHHHHhcCChhHHHHHHHhhcccCCCChHHHHHHHHHHHHccccHHHHHHHHHHHH
Q 004249          288 LVDLVYYSG----KELLLALKIKAGICHIQLGNTDKAEILLTAIHWENVSDHAESINEIADLFKNRELYSTALKYYHMLE  363 (765)
Q Consensus       288 ~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  363 (765)
                      ..-..++..    .-.....+-.+..+|.+.|+++.|+..+-.-....  .+   ....-.++.+.++.+..-+...-.+
T Consensus       157 ~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~--~~---~~~f~e~~~k~~N~e~~~~~i~~yL  231 (336)
T d1b89a_         157 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDA--WK---EGQFKDIITKVANVELYYRAIQFYL  231 (336)
T ss_dssp             HHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTT--CC---HHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred             hccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhh--hh---HHHHHHHHHccCChHHHHHHHHHHH
Confidence            321110000    00001113345566778888888876655421100  00   1111122233333333333222222


Q ss_pred             hccCCCCCHHH----------HHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHhc
Q 004249          364 ANAGVHNDGCL----------HLKIAECSLALKEREKSIIYFYKALQILEDNIDARLTLASLLLEDAKDEEAISLL  429 (765)
Q Consensus       364 ~~~~~~~~~~~----------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  429 (765)
                      ..  .|....-          ...+.....+.++..-...+++.+..  .++......++.+|...++++.-.+..
T Consensus       232 ~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~--~n~~~vn~al~~lyie~~d~~~l~~~i  303 (336)
T d1b89a_         232 EF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQALRTSI  303 (336)
T ss_dssp             HH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             Hc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHH--cChHHHHHHHHHHHhCcchhHHHHHHH
Confidence            22  2322111          12234455666777777777777554  345678888999999999975544443