Citrus Sinensis ID: 004269
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 764 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SGQ6 | 773 | Pentatricopeptide repeat- | yes | no | 0.882 | 0.871 | 0.543 | 0.0 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.451 | 0.547 | 0.248 | 3e-23 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.679 | 0.823 | 0.219 | 7e-23 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.668 | 0.808 | 0.220 | 7e-22 | |
| Q9SH26 | 577 | Pentatricopeptide repeat- | no | no | 0.450 | 0.596 | 0.239 | 1e-20 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.450 | 0.546 | 0.237 | 1e-20 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.698 | 0.583 | 0.226 | 2e-20 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.341 | 0.284 | 0.281 | 2e-20 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.560 | 0.567 | 0.213 | 4e-20 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.683 | 0.476 | 0.211 | 1e-19 |
| >sp|Q9SGQ6|PP126_ARATH Pentatricopeptide repeat-containing protein At1g76280 OS=Arabidopsis thaliana GN=At1g76280 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/756 (54%), Positives = 535/756 (70%), Gaps = 82/756 (10%)
Query: 37 SRTLTTTMGLNE----ESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH 92
SR++TT +G NE + SK Q+QIVDAL GER AS LL L ++SL ADDF
Sbjct: 43 SRSVTTMIG-NEFIRCQDESKILQLQIVDALRSGERQGASALLFKLIQGNYSLSADDFHD 101
Query: 93 ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
IL YCARSPDP+FVMET+ +M +KEI L+++ L ++++LC GG+L++AS I+ + E
Sbjct: 102 ILYYCARSPDPVFVMETYSVMCKKEISLDSRSLLFIVKSLCNGGHLDKASEFIHAVREDD 161
Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
I P+LP+YN FLGACA+ S+ HA+ CL+LMD R VGKN +TY LLKLAV+Q+NLS V
Sbjct: 162 RISPLLPIYNFFLGACARTRSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTV 221
Query: 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL 272
++IW+ Y+ HY+L I SLR+F+WSFTRL DLKSAYE LQHMV LA+ G+ ++ +++ G+L
Sbjct: 222 NDIWKHYVNHYNLDILSLRRFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKL 280
Query: 273 RSSRLDIPIPLN-------------------------ALP-------VMKVLRWSFSDVI 300
S+RL IP+P ALP ++VLRWSF+DVI
Sbjct: 281 HSTRLYIPVPSKDETGSEKFAFGVTDRIVDCNSSSKVALPKGHNKILAIRVLRWSFNDVI 340
Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
HACG+++NS LAEQLMLQ LK+MQQ NLK
Sbjct: 341 HACGQSKNSELAEQLMLQ--------------------------------LKVMQQQNLK 368
Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
P DST+AT++ CSKAL++DLAE LLDQIS C+ PF+ LAA D++D+PERA+++ A+
Sbjct: 369 PYDSTLATVAAYCSKALQVDLAEHLLDQISECSYSYPFNNLLAAYDSLDQPERAVRVLAR 428
Query: 421 MRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
M++ KLRPD+RTYELLFSLFGNVNAPYEEGNM SQVD KRINAIEMDM RN QHS IS
Sbjct: 429 MKELKLRPDMRTYELLFSLFGNVNAPYEEGNMLSQVDCCKRINAIEMDMMRNGFQHSPIS 488
Query: 480 MKNLLKALGAEGMIRELIQYF-------CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
N+L+ALGAEGM+ E+I++ S LGTPTYN VLHSL+EA E+ + IF
Sbjct: 489 RLNVLRALGAEGMVNEMIRHLQKAENLSAHSNMYLGTPTYNIVLHSLLEANETDMVINIF 548
Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
K+MK+CG P + ATYNIMIDCCS+I +KSA ALVSMM+RDGF P+ +T+TAL+KILL+
Sbjct: 549 KRMKSCGCPADVATYNIMIDCCSLIHSYKSACALVSMMIRDGFSPKAVTFTALMKILLND 608
Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
+F+EALNLLD +LE I DVL YNTIL+KA EKG IDVIE+I+EQMH+ KV PDP+TC
Sbjct: 609 ANFEEALNLLDQAALEEIHLDVLSYNTILRKAFEKGMIDVIEYIVEQMHREKVNPDPTTC 668
Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMRMLCEE-VSTLEEKRSDFED-LILAEDSEAESRIL 710
H+VFS YV G+H +A+EAL VLS+RML EE +L++K+ + E+ +++ED EAE++I+
Sbjct: 669 HYVFSCYVEKGYHATAIEALNVLSLRMLNEEDKESLQDKKIELEENFVMSEDPEAETKII 728
Query: 711 QFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDRA 746
+ S E+LA AALL LRWC ++G I WS D++
Sbjct: 729 ELFRKSEEHLA--AALLNLRWCAMLGGRIIWSEDQS 762
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 170/366 (46%), Gaps = 21/366 (5%)
Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
++ V++ + ++ LA L+ +M+ L+P Y+ I + + + + + + K M
Sbjct: 223 TYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM 282
Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
+ ++P T ++L S C+ D + L D I R NP FSA + A K
Sbjct: 283 ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 342
Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
A K++ +M ++ + P I TY L + F M ++D AK++ M
Sbjct: 343 VEAEKLYDEMVKRSIDPSIVTYSSLINGFC----------MHDRLDEAKQMFEF---MVS 389
Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKTPL--GTPTYNTVLHSLVEAQESHR 527
+ ++ L+K + E ++ F + S+ L T TYN ++ L +A +
Sbjct: 390 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 449
Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
A EIFK+M + G+PPN TYN ++D + A + + R P TY +I+
Sbjct: 450 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 509
Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
+ G ++ +L +SL+G+ DV+ YNT++ C KG + + + ++M ++ P
Sbjct: 510 GMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLP 569
Query: 648 DPSTCH 653
+ S C+
Sbjct: 570 N-SGCY 574
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (273), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 120/546 (21%), Positives = 232/546 (42%), Gaps = 27/546 (4%)
Query: 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214
+P + ++ L A AK++ + M + + N TY+ L+ + LS
Sbjct: 78 FPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALA 137
Query: 215 IWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRL 272
+ +K Y I +L + F + A + MV + + N G
Sbjct: 138 VLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLF 197
Query: 273 RSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
R +R + L V+K + ++ V++ + + LA L+ +M+ ++P
Sbjct: 198 RHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVV 257
Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQ 388
Y+ I A+ + + + + + + M ++P T +L C+ D + L D
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317
Query: 389 ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAP 445
I R NP FSA + A K A K++ +M ++ + PDI TY L + F
Sbjct: 318 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC----- 372
Query: 446 YEEGNMFSQVDSAKRINAIEMDMARN---NIQHSHISMKNLLKALGA-EGMIRELIQYFC 501
M ++D AK + E+ ++++ N+ + +K KA EGM EL +
Sbjct: 373 -----MHDRLDEAKHM--FELMISKDCFPNVVTYNTLIKGFCKAKRVDEGM--ELFREMS 423
Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
T TY T++H +A+E A +FKQM + G+ P+ TY+I++D +
Sbjct: 424 QRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVE 483
Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
+A + + R P TY +I+ + G ++ +L +SL+G+ +V+ Y T++
Sbjct: 484 TALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMM 543
Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
C KG + + + +M + PD T + + ++ G ++ E ++ +
Sbjct: 544 SGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFV 603
Query: 682 EEVSTL 687
+ ST+
Sbjct: 604 GDASTI 609
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 106 bits (264), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 122/554 (22%), Positives = 234/554 (42%), Gaps = 43/554 (7%)
Query: 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214
+P + +N L A AK++ + M + + + TY+ + + LS
Sbjct: 80 FPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALA 139
Query: 215 IWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA-----------MMGKL 262
+ +K Y I +L + + + + A + MV + + G
Sbjct: 140 VLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLF 199
Query: 263 YINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322
N+ SE + +D + P + ++ V++ + + LA L+ +M+
Sbjct: 200 LHNKASEA---VALVDQMVQRGCQPDL----VTYGTVVNGLCKRGDIDLALSLLKKMEKG 252
Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKALELDL 381
++ Y+ I + + + + + + M ++P T ++L S C+ D
Sbjct: 253 KIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDA 312
Query: 382 AEALLDQISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSL 438
+ L D I R NP FSA + A K A K++ +M ++ + PDI TY L +
Sbjct: 313 SRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING 372
Query: 439 FGNVNAPYEEGNMFSQVDSAKRINA--IEMDMARNNIQHSHISMKNLLKALGAE-GMIRE 495
F M ++D AK + I D N + +S + +K KA E GM E
Sbjct: 373 FC----------MHDRLDEAKHMFELMISKDCFPNVVTYSTL-IKGFCKAKRVEEGM--E 419
Query: 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555
L + T TY T++H +A++ A +FKQM + G+ PN TYNI++D
Sbjct: 420 LFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLD--G 477
Query: 556 IIRCFKSASALVSM--MVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613
+ + K A A+V + R P TY +I+ + G ++ L +SL+G+ +
Sbjct: 478 LCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPN 537
Query: 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
V+ YNT++ C KG + + ++++M ++ P+ T + + + G ++ E ++
Sbjct: 538 VIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIK 597
Query: 674 VLSMRMLCEEVSTL 687
+ + ST+
Sbjct: 598 EMRSCGFAGDASTI 611
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 169/364 (46%), Gaps = 20/364 (5%)
Query: 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354
++ V++ + + LA L+ +M++ ++ + Y I ++ R + + + M
Sbjct: 227 TYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEM 286
Query: 355 QQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDKP 411
+ ++P T ++L S C+ D + L D I R NP F+A + A K
Sbjct: 287 ENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKL 346
Query: 412 ERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMAR 470
A K++ +M ++ + PDI TY L + F M ++D AK + E+ +++
Sbjct: 347 VEAEKLYDEMIKRSIDPDIFTYSSLINGFC----------MHDRLDEAKHM--FELMISK 394
Query: 471 NNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKTPL--GTPTYNTVLHSLVEAQESHR 527
+ + ++ L+ I E ++ F + S+ L T TY T++H +A++
Sbjct: 395 DCFPNV-VTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDN 453
Query: 528 AMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
A +FKQM + G+ PN TYN ++D + A + + R P TY +I+
Sbjct: 454 AQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 513
Query: 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647
+ G ++ +L +SL+G+ DV++YNT++ C KG + + + +M ++ P
Sbjct: 514 GMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLP 573
Query: 648 DPST 651
D T
Sbjct: 574 DSGT 577
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/366 (23%), Positives = 168/366 (45%), Gaps = 22/366 (6%)
Query: 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353
+++ V++ + + LA L+ +M+ ++ Y I A+ + + + + + +
Sbjct: 221 FTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTE 280
Query: 354 MQQNNLKPQDSTIATL-SVECSKALELDLAEALLDQISRCTNPK--PFSAFLAACDTMDK 410
M ++P T +L C+ D + L D I R NP FSA + A K
Sbjct: 281 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 340
Query: 411 PERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMA 469
A K++ +M ++ + PDI TY L + F M ++D AK + E+ ++
Sbjct: 341 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFC----------MHDRLDEAKHM--FELMIS 388
Query: 470 RN---NIQHSHISMKNLLKALGAE-GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525
++ N+ + +K KA E GM EL + T TYNT++ L +A +
Sbjct: 389 KDCFPNVVTYNTLIKGFCKAKRVEEGM--ELFREMSQRGLVGNTVTYNTLIQGLFQAGDC 446
Query: 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585
A +IFK+M + G+PP+ TY+I++D + A + + + P TY +
Sbjct: 447 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 506
Query: 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645
I+ + G ++ +L +SL+G+ +V++Y T++ C KG + + + +M ++
Sbjct: 507 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 566
Query: 646 QPDPST 651
P+ T
Sbjct: 567 LPNSGT 572
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 135/595 (22%), Positives = 240/595 (40%), Gaps = 61/595 (10%)
Query: 93 ILNYCARSPDPLFVMETWRMMEEKE-----IGLNNKCYLLMMQALCKGGYLEEASNLIYF 147
++ C D L+V++ R M + E L CY ++ +L + G ++E +Y
Sbjct: 149 MIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQ-VYM 207
Query: 148 LGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207
+ P + YN + KL ++ AN + + + + TYT L+ +K
Sbjct: 208 EMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRK 267
Query: 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT 267
+L + +++ + R + AY L H + +A R
Sbjct: 268 DLDSAFKVFNE----------------MPLKGCRRNEVAYTHLIHGLCVA-------RRI 304
Query: 268 SEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS 327
E +D+ + + +R + CG + S A L+ +M+ G++P+
Sbjct: 305 DEA------MDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSE-ALNLVKEMEETGIKPN 357
Query: 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKALELDLAEA-- 384
HTY I ++ S E+L M + L P T A ++ C + + D +
Sbjct: 358 IHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVE 417
Query: 385 LLDQISRCTNPKPFSAFLAA-CDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNV 442
L++ N + ++ + C + +A+ + KM +K+ PD+ TY L +
Sbjct: 418 LMESRKLSPNTRTYNELIKGYCKS--NVHKAMGVLNKMLERKVLPDVVTYNSL------I 469
Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
+ GN DSA R+ ++ D Q ++ SM + +L + E F D
Sbjct: 470 DGQCRSGNF----DSAYRLLSLMNDRGLVPDQWTYTSM---IDSLCKSKRVEEACDLF-D 521
Query: 503 SKTPLGT-PT---YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558
S G P Y ++ +A + A + ++M + PN+ T+N +I
Sbjct: 522 SLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADG 581
Query: 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618
K A+ L MV+ G P T T LI LL GDFD A + + G D Y
Sbjct: 582 KLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYT 641
Query: 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673
T ++ C +GR+ E ++ +M +N V PD T + GY + G N A + L+
Sbjct: 642 TFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLK 696
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 128/277 (46%), Gaps = 16/277 (5%)
Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
FSA ++A E AI +F M++ LRP++ TY + ++A + G F QV
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAV------IDACGKGGMEFKQV- 323
Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYN 513
AK + +M RN +Q I+ +LL G+ R L + + +YN
Sbjct: 324 -AKFFD----EMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYN 378
Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
T+L ++ + + A EI QM I PN +Y+ +ID + F A L M
Sbjct: 379 TLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL 438
Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
G ++Y L+ I G +EAL++L ++ GI DV+ YN +L ++G+ D +
Sbjct: 439 GIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEV 498
Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
+ + +M + V P+ T + GY G + AME
Sbjct: 499 KKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAME 535
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 110/516 (21%), Positives = 203/516 (39%), Gaps = 88/516 (17%)
Query: 152 YGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211
+GI P + +N + A + H + A L L+ M S + +E T+T +++ + + +L
Sbjct: 183 WGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDG 242
Query: 212 VHEIWEDYIKHY-SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG 270
I E ++ S S S+ V F + ++ A +Q M
Sbjct: 243 ALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM----------------- 285
Query: 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330
S D P +++F+ +++ + + A ++M M G P +T
Sbjct: 286 ----SNQDGFFPD---------QYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYT 332
Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
Y+ I + ++ +EVL M + P T TL K +++ A L ++
Sbjct: 333 YNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLT 392
Query: 391 R-------CTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNV 442
CT F++ + A+++F +MR K PD TY +L
Sbjct: 393 SKGILPDVCT----FNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLID----- 443
Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
S K A+ N+LK + G R +I
Sbjct: 444 ----------SLCSKGKLDEAL-----------------NMLKQMELSGCARSVI----- 471
Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKS 562
TYNT++ +A ++ A EIF +M+ G+ N+ TYN +ID R +
Sbjct: 472 --------TYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVED 523
Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
A+ L+ M+ +G P TY +L+ GD +A +++ ++ G D++ Y T++
Sbjct: 524 AAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLIS 583
Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
C+ GR++V ++ + + P + V G
Sbjct: 584 GLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQG 619
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 122/577 (21%), Positives = 232/577 (40%), Gaps = 55/577 (9%)
Query: 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165
+M T+R+ N Y ++++ + G ++++ + +G YG P + N+ L
Sbjct: 112 LMTTYRLCNS-----NPSVYDILIRVYLREGMIQDSLEIFRLMG-LYGFNPSVYTCNAIL 165
Query: 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YS 224
G+ K V L M R + + T+ L+ + + + + + K Y+
Sbjct: 166 GSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYA 225
Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYI-----------NRTSEGRL- 272
+I + + + + K+A E L HM + + + NR ++G L
Sbjct: 226 PTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLL 285
Query: 273 -RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331
R R + P +++ +I+ +A QL+ +M S GL P+ T+
Sbjct: 286 LRDMRKRMIHPNEV---------TYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTF 336
Query: 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISR 391
+ I +S+ + +++ +M+ L P + + L K E DLA ++ R
Sbjct: 337 NALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKR 396
Query: 392 ---CTNPKPFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPYE 447
C ++ + + A+ + +M + + PDI TY L
Sbjct: 397 NGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALI----------- 445
Query: 448 EGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL 507
N F +V K I + R + + I L+ G ++E I+ + ++
Sbjct: 446 --NGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIY-EAMILE 502
Query: 508 GTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
G T+N ++ SL +A + A E + M + GI PN +++ +I+ A
Sbjct: 503 GHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKA 562
Query: 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH--DVLLYNTIL 621
++ M + G +P TY +L+K L G EA L SL +P D ++YNT+L
Sbjct: 563 FSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLK--SLHAVPAAVDTVMYNTLL 620
Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSG 658
C+ G + + +M Q + PD T + SG
Sbjct: 621 TAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISG 657
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 764 | ||||||
| 302141664 | 804 | unnamed protein product [Vitis vinifera] | 0.968 | 0.920 | 0.631 | 0.0 | |
| 225459866 | 728 | PREDICTED: pentatricopeptide repeat-cont | 0.869 | 0.912 | 0.626 | 0.0 | |
| 298111984 | 805 | pentatricopeptide repeat-containing prot | 0.918 | 0.872 | 0.58 | 0.0 | |
| 297842383 | 800 | pentatricopeptide repeat-containing prot | 0.917 | 0.876 | 0.575 | 0.0 | |
| 255572759 | 802 | pentatricopeptide repeat-containing prot | 0.954 | 0.908 | 0.564 | 0.0 | |
| 224057555 | 705 | predicted protein [Populus trichocarpa] | 0.858 | 0.930 | 0.593 | 0.0 | |
| 334183937 | 801 | pentatricopeptide repeat-containing prot | 0.918 | 0.876 | 0.564 | 0.0 | |
| 449503243 | 806 | PREDICTED: pentatricopeptide repeat-cont | 0.951 | 0.901 | 0.558 | 0.0 | |
| 6573717 | 800 | T23E18.21 [Arabidopsis thaliana] | 0.905 | 0.865 | 0.543 | 0.0 | |
| 449443982 | 834 | PREDICTED: pentatricopeptide repeat-cont | 0.963 | 0.882 | 0.536 | 0.0 |
| >gi|302141664|emb|CBI18867.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1003 bits (2594), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/785 (63%), Positives = 610/785 (77%), Gaps = 45/785 (5%)
Query: 1 MYRPLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTT-----MGLNEESISKAT 55
M+R + R + I+DS SK ++++N+ KLE RT TT+ G +SI++
Sbjct: 1 MHRYVSRVPLRSISDSLYLSKSSVYDQKNLVRKLESLRTFTTSRDHDCFGYGRKSITRLL 60
Query: 56 QMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEE 115
Q+QIVDAL ERSRAS LL LG ++SL ADDF +IL +C++SPDPLFVME WR+M+E
Sbjct: 61 QVQIVDALRSNERSRASSLLSELGRGNYSLRADDFIYILEHCSKSPDPLFVMEIWRIMDE 120
Query: 116 KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175
KE+ +NN+CY+L +QALCKGGYLEEA NL+ F+GE + I+PILP+YN+FL C + S++
Sbjct: 121 KEVHVNNRCYMLSIQALCKGGYLEEAFNLLNFVGENHDIHPILPMYNNFLRGCVQTRSLL 180
Query: 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVW 235
HAN CLDLM+ +++GKNEVTY++ LKLAV Q+NLSA H+IW++Y+ +YS+SI SLRKF+W
Sbjct: 181 HANQCLDLMEHQVLGKNEVTYSQFLKLAVLQQNLSAAHKIWKEYMTYYSMSIISLRKFIW 240
Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN----------- 284
SFTRLRDL+SAY LQHMV L G ++IN+++EGRL SSRLDIPIP N
Sbjct: 241 SFTRLRDLESAYAALQHMVDLVFKGSIFINKSAEGRLCSSRLDIPIPKNGDMGLKRCMEE 300
Query: 285 -------------------ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325
++PVMKVLRWSFSDVI+AC +TQN GLAEQL+LQMQ+LGL+
Sbjct: 301 NEHSLPSVSDNSKKIDSHASMPVMKVLRWSFSDVIYACAQTQNCGLAEQLILQMQNLGLE 360
Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
PS HTYDG I+AIVSDRG +GMEVLK MQ NLKP DST+A LS+ SKAL+LDLAE+L
Sbjct: 361 PSCHTYDGLIKAIVSDRGFSDGMEVLKTMQLRNLKPYDSTLAALSIGSSKALQLDLAESL 420
Query: 386 LDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNA 444
LDQISR + PF+AFLAACDT+D+PERA+ I +KM+Q KL+P++ TYELLFSLFGNVNA
Sbjct: 421 LDQISRISYVHPFNAFLAACDTLDQPERAVPILSKMKQLKLQPNVGTYELLFSLFGNVNA 480
Query: 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY----- 499
PYEEGNM SQVD A+RI AIEMDM N IQHSH+SMKNLLKALGAEGMIREL+QY
Sbjct: 481 PYEEGNMLSQVDVARRIKAIEMDMMNNGIQHSHLSMKNLLKALGAEGMIRELMQYLHVAE 540
Query: 500 --FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
F + T LGTP YNTVLHSLVEA+ESH A+EIFK M + +P +AATYNIMIDCCS I
Sbjct: 541 NQFFRTNTYLGTPIYNTVLHSLVEAKESHIAIEIFKNMISRSLPRDAATYNIMIDCCSTI 600
Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
+C+KSA ALVSMM+RDGF P T+TYTALIKILL+ DFDEALNLLD LE IP DVLLY
Sbjct: 601 KCYKSACALVSMMMRDGFLPWTLTYTALIKILLEREDFDEALNLLDQARLEEIPSDVLLY 660
Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
NTIL+KAC KGRID+IE + EQMHQ K+QPDPSTC++VFS YV+ GF ++A+E+LQVLSM
Sbjct: 661 NTILQKACLKGRIDLIELVAEQMHQEKIQPDPSTCYYVFSSYVDGGFFSTALESLQVLSM 720
Query: 678 RMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVGF 737
RM+ E+ STLEEKR++ ED I +ED +AES+ILQF + S+ENLA ALL LRWC I G
Sbjct: 721 RMISEDNSTLEEKRTELEDFIHSEDKDAESQILQFFKGSDENLAI--ALLNLRWCAISGS 778
Query: 738 PISWS 742
PISW+
Sbjct: 779 PISWT 783
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459866|ref|XP_002284840.1| PREDICTED: pentatricopeptide repeat-containing protein At1g76280-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/728 (62%), Positives = 556/728 (76%), Gaps = 64/728 (8%)
Query: 45 GLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPL 104
G +SI++ Q+QIVDAL ERSRAS LL LG ++SL ADDF +IL +C++SPDPL
Sbjct: 14 GYGRKSITRLLQVQIVDALRSNERSRASSLLSELGRGNYSLRADDFIYILEHCSKSPDPL 73
Query: 105 FVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164
FVME WR+M+EKE+ +NN+CY+L +QALCKGGYLEEA NL+ F+GE + I+PILP+YN+F
Sbjct: 74 FVMEIWRIMDEKEVHVNNRCYMLSIQALCKGGYLEEAFNLLNFVGENHDIHPILPMYNNF 133
Query: 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS 224
L C + S++HAN CLDLM+ +++GKNEVTY++ LKLAV Q+NLSA H+IW++Y+ +YS
Sbjct: 134 LRGCVQTRSLLHANQCLDLMEHQVLGKNEVTYSQFLKLAVLQQNLSAAHKIWKEYMTYYS 193
Query: 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284
+SI SLRKF+WSFTRLRDL+SAY LQHMV L G ++IN+++EGRL SSRLDIPIP N
Sbjct: 194 MSIISLRKFIWSFTRLRDLESAYAALQHMVDLVFKGSIFINKSAEGRLCSSRLDIPIPKN 253
Query: 285 ----------------------ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322
++PVMKVLRWSFSDVI+AC +TQN GLAEQL+LQ
Sbjct: 254 GDMGLKRCMEENEHSLPSVSDNSMPVMKVLRWSFSDVIYACAQTQNCGLAEQLILQ---- 309
Query: 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382
LK MQ NLKP DST+A LS+ SKAL+LDLA
Sbjct: 310 ----------------------------LKTMQLRNLKPYDSTLAALSIGSSKALQLDLA 341
Query: 383 EALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGN 441
E+LLDQISR + PF+AFLAACDT+D+PERA+ I +KM+Q KL+P++ TYELLFSLFGN
Sbjct: 342 ESLLDQISRISYVHPFNAFLAACDTLDQPERAVPILSKMKQLKLQPNVGTYELLFSLFGN 401
Query: 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY-- 499
VNAPYEEGNM SQVD A+RI AIEMDM N IQHSH+SMKNLLKALGAEGMIREL+QY
Sbjct: 402 VNAPYEEGNMLSQVDVARRIKAIEMDMMNNGIQHSHLSMKNLLKALGAEGMIRELMQYLH 461
Query: 500 -----FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
F + T LGTP YNTVLHSLVEA+ESH A+EIFK M + +P +AATYNIMIDCC
Sbjct: 462 VAENQFFRTNTYLGTPIYNTVLHSLVEAKESHIAIEIFKNMISRSLPRDAATYNIMIDCC 521
Query: 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV 614
S I+C+KSA ALVSMM+RDGF P T+TYTALIKILL+ DFDEALNLLD LE IP DV
Sbjct: 522 STIKCYKSACALVSMMMRDGFLPWTLTYTALIKILLEREDFDEALNLLDQARLEEIPSDV 581
Query: 615 LLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674
LLYNTIL+KAC KGRID+IE + EQMHQ K+QPDPSTC++VFS YV+ GF ++A+E+LQV
Sbjct: 582 LLYNTILQKACLKGRIDLIELVAEQMHQEKIQPDPSTCYYVFSSYVDGGFFSTALESLQV 641
Query: 675 LSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTI 734
LSMRM+ E+ STLEEKR++ ED I +ED +AES+ILQF + S+ENLA ALL LRWC I
Sbjct: 642 LSMRMISEDNSTLEEKRTELEDFIHSEDKDAESQILQFFKGSDENLAI--ALLNLRWCAI 699
Query: 735 VGFPISWS 742
G PISW+
Sbjct: 700 SGSPISWT 707
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298111984|gb|ADI58371.1| pentatricopeptide repeat-containing protein [Capsicum annuum] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/750 (58%), Positives = 544/750 (72%), Gaps = 48/750 (6%)
Query: 38 RTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYC 97
R+ T+++G E +S++ Q +IVDAL GE+SRA LL ++ L A+DF IL C
Sbjct: 38 RSFTSSIGHVGEPVSRSGQKKIVDALVSGEKSRAVRLLYEFSLGNNKLSANDFASILQSC 97
Query: 98 ARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI 157
AR PDPLFVME WR+MEEKEI +++KCY L ++ALCKGGYL+EA +L+ +GE Y +
Sbjct: 98 ARLPDPLFVMEIWRIMEEKEINISDKCYSLAVRALCKGGYLKEALSLMNIMGENLNCYSM 157
Query: 158 LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217
LP+YN+FL AC + S+ +A+ C+DLM+ +MVGKNE+TY +LLKLAV Q+NLSAVHEIW+
Sbjct: 158 LPIYNNFLAACYETQSVDYASKCMDLMEHQMVGKNEITYAQLLKLAVLQQNLSAVHEIWK 217
Query: 218 DYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277
+ IK YSLSI SLRKF+WSFT L DL+SAY LQHMV LA I+RT+EGR RL
Sbjct: 218 ECIKFYSLSIISLRKFIWSFTELGDLESAYTALQHMVRLAFR-DCDISRTAEGRFCDVRL 276
Query: 278 DIPIPLN-------------------------------------ALPVMKVLRWSFSDVI 300
DIP P + VMK+LRWSF+DV+
Sbjct: 277 DIPAPSTGSWSFIDVSLDIEGSSNFDIESQSLGNMEISTVRKKLSASVMKLLRWSFNDVM 336
Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
HAC + QN LAEQL+LQMQ+LGLQPS TYDGFIRAI + RG G+EVLK+M++ N+K
Sbjct: 337 HACAKVQNCDLAEQLILQMQTLGLQPSGSTYDGFIRAIATTRGFSEGVEVLKVMREENIK 396
Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
P+DST+A L++ CS+ LELDLAE+ LD+I +P P +AFL ACD +D+PERA++IFAK
Sbjct: 397 PRDSTLAVLAIICSRELELDLAESFLDEIYEIRSPHPCNAFLEACDVLDRPERAVQIFAK 456
Query: 421 MRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
M++ L+P+IRTYELLFSLFGNVNAPYEEGNM SQVD AKRINAIEMDM N +QHSH+S
Sbjct: 457 MKKLNLQPNIRTYELLFSLFGNVNAPYEEGNMLSQVDVAKRINAIEMDMMINGLQHSHLS 516
Query: 480 MKNLLKALGAEGMIRELIQY-------FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
+KN LKALG EGMI+ELIQY F T + TP YNTVLHSLVEA+ES A ++F
Sbjct: 517 LKNELKALGTEGMIKELIQYLHAAENRFSRYDTYMITPVYNTVLHSLVEAKESQMATKMF 576
Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
K M + G+PP+AATYNIMIDCCSII CF+SA AL+SMM R+GF P+ +T T L+KILL
Sbjct: 577 KSMVSSGVPPDAATYNIMIDCCSIIGCFRSALALISMMFRNGFNPEAVTLTGLLKILLRS 636
Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
DFD L LL+ EGI DVLLY+T+L+ A EKGRIDVIE I+EQMH V PDPSTC
Sbjct: 637 EDFDGTLKLLNQGISEGIQLDVLLYDTVLQVASEKGRIDVIELIVEQMHLQGVLPDPSTC 696
Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQF 712
VF+ YV+ GF+N+AMEALQVLS+RM+ +EK+++ E+LIL EDSE ESRIL+
Sbjct: 697 SHVFAAYVDHGFYNTAMEALQVLSVRMIAGGFKDNDEKQTELENLILGEDSEDESRILKP 756
Query: 713 CEDSNENLAFTAALLQLRWCTIVGFPISWS 742
+DS E L T ALLQLRWC I+G+P+SWS
Sbjct: 757 FKDSKEYL--TVALLQLRWCAILGYPVSWS 784
|
Source: Capsicum annuum Species: Capsicum annuum Genus: Capsicum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842383|ref|XP_002889073.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297334914|gb|EFH65332.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/756 (57%), Positives = 555/756 (73%), Gaps = 55/756 (7%)
Query: 37 SRTLTTTMGLNE----ESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH 92
SR++TT +G NE + SK Q+QIVDAL GER AS LL ++SL A DF
Sbjct: 43 SRSVTTLIG-NEFIRCQDESKILQVQIVDALRSGERPGASALLFQFIQGNYSLSAHDFHD 101
Query: 93 ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
IL+YCARSPDP+FVMET+ +M +KEI L+++ L ++Q+LC GG+L++AS I+ +GE
Sbjct: 102 ILHYCARSPDPVFVMETYSVMCKKEISLDSRSLLFIVQSLCNGGHLDKASEFIHAVGEDD 161
Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
I PILPVYN FLGACAK S+ HA+ CL+LMD R VGKNE+TY LLK +NLSAV
Sbjct: 162 SISPILPVYNYFLGACAKTRSVYHASKCLELMDQRRVGKNEITYAALLK-----RNLSAV 216
Query: 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL 272
++IW+ Y+ HYSL I LRKF+WSFTRL DLKSAYE LQHMV LA G+L++ +++ G+L
Sbjct: 217 NDIWKHYVNHYSLDILPLRKFIWSFTRLGDLKSAYELLQHMVDLASRGELFV-KSNRGKL 275
Query: 273 RSSRLDIPIPL--------------------------------NALPVMKVLRWSFSDVI 300
S+ LDIP+P N +P +VLRWSF+DVI
Sbjct: 276 HSTTLDIPVPAKGETGSEKVAFGVNDHNVEYNSSSKVALPKGHNKIPATRVLRWSFNDVI 335
Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
HACG+++NS LAEQLMLQMQ++GL PSSHTYDGFIRA+ G GM +LK+MQQ NLK
Sbjct: 336 HACGQSKNSELAEQLMLQMQNIGLLPSSHTYDGFIRAVAFPGGYEYGMTLLKVMQQQNLK 395
Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
P DST+AT+S CSKA ++DLAE LLDQIS C+ PF+ LAA D++D+PERA+++ A+
Sbjct: 396 PYDSTLATVSAYCSKAFQVDLAEHLLDQISECSYAYPFNNLLAAYDSLDQPERAVRVLAR 455
Query: 421 MRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
M+Q KLRPD+RTYELLFSLFGNVNAPYEEGNM SQVD KRINAIEMDM RN QHS IS
Sbjct: 456 MKQLKLRPDMRTYELLFSLFGNVNAPYEEGNMLSQVDCCKRINAIEMDMVRNGFQHSPIS 515
Query: 480 MKNLLKALGAEGMIRELIQYF-------CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
+N+L+ALGAEGM+ E+I++ S LGTPTYN VLHSL+EA E+ + IF
Sbjct: 516 RRNVLRALGAEGMVNEMIRHLQKAENLNVHSNMYLGTPTYNIVLHSLLEANETDMVINIF 575
Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
K+MK+CG P + ATYNIMIDCCSII +KSA ALVSMM+RDGF P+ +T+TAL+KILL+
Sbjct: 576 KRMKSCGCPADVATYNIMIDCCSIIHSYKSACALVSMMIRDGFSPKAVTFTALMKILLND 635
Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
G+F+EALNLLD +LE I DVL YNTIL+KA EKG IDVIE+I+EQMH+ KV PDP+TC
Sbjct: 636 GNFEEALNLLDQAALEEIHLDVLSYNTILRKAFEKGMIDVIEYIVEQMHREKVNPDPTTC 695
Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMRMLCEE-VSTLEEKRSDFED-LILAEDSEAESRIL 710
H+VF+ YV G+H +A+EAL VLS+RML EE +L+EK+ + E+ +++ED EAE++I+
Sbjct: 696 HYVFTCYVEKGYHATAIEALNVLSLRMLNEEDKESLQEKKIELEENFVMSEDPEAETKII 755
Query: 711 QFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDRA 746
+ +S E+LA AALL LRWC ++G I WS D++
Sbjct: 756 ELFRNSEEHLA--AALLNLRWCAMLGARIIWSEDQS 789
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572759|ref|XP_002527312.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223533312|gb|EEF35064.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/827 (56%), Positives = 569/827 (68%), Gaps = 98/827 (11%)
Query: 1 MYRPLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTT-----MGLNEESISKAT 55
M RP R IADSF +S K+ +RNVA R++ T+ +G EES K+
Sbjct: 1 MQRPPGRVPLWSIADSFLRSNSIKYGQRNVAGDAGFCRSIATSTGDIILGYGEESTVKSI 60
Query: 56 QMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEE 115
Q QI+DAL GER RAS++L +LGHA++ L +DF IL YCARSPDPLF METWR+MEE
Sbjct: 61 QKQILDALNLGERGRASNMLSDLGHANNLLRPNDFVDILRYCARSPDPLFAMETWRIMEE 120
Query: 116 KEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175
KEIG NN LLM++ALCKGGYLEEA NLI F+GE++G+ P L VYNSFLGAC+K+ +++
Sbjct: 121 KEIGFNNISCLLMVRALCKGGYLEEAYNLINFIGEKHGMNPSLAVYNSFLGACSKMRNLI 180
Query: 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVW 235
AN CLDLM RM GKNE+TY +LLKLAVWQ+NLSAVHEI +DY K YS SI SL+ F+
Sbjct: 181 LANKCLDLMAHRMSGKNEITYMQLLKLAVWQQNLSAVHEILKDYTKLYSPSILSLQNFIE 240
Query: 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN----------- 284
SFTRL DL SAYETLQHMV+LA+ G I T EG L SSRLDIPIP N
Sbjct: 241 SFTRLGDLNSAYETLQHMVSLALRGNTSIGSTVEGWLYSSRLDIPIPSNVELGLQRFGLK 300
Query: 285 ---------------------------------------ALPVMKVLRWSFSDVIHACGR 305
+L MKVL+ SF DVIHAC +
Sbjct: 301 EKNQQFVPLKADDATNSIEQSMISNLGKEAERAGVDETRSLATMKVLKSSFGDVIHACSQ 360
Query: 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365
T+N+ LAEQLMLQ LKIMQQ +LKP +ST
Sbjct: 361 TRNARLAEQLMLQ--------------------------------LKIMQQRDLKPYNST 388
Query: 366 IATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-K 424
+ATLSV CSK LELDLAEALLDQ+S +P PF+AFL AC+ D+PERAI+I+AKM+Q
Sbjct: 389 LATLSVVCSKNLELDLAEALLDQLSNYQDPYPFNAFLRACNVTDRPERAIRIWAKMKQLY 448
Query: 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484
++PDIRTYELLFSLFGNVNAPYE G MFSQVD AKRINAIEMDM +N ++H+H+SMKNLL
Sbjct: 449 VQPDIRTYELLFSLFGNVNAPYEYGTMFSQVDCAKRINAIEMDMVKNGVRHNHLSMKNLL 508
Query: 485 KALGAEGMIRELIQY-------FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKT 537
KALGAEGMIRELI Y FC + GTP NTVLHSLVEA ES+ A+++FK MK+
Sbjct: 509 KALGAEGMIRELIHYLHKEEDLFCHNNIYFGTPICNTVLHSLVEAGESYLALQMFKNMKS 568
Query: 538 CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597
G NAATY +MID CS I+C+K+A ALVSMM+RDGFYPQT TYTALIK+L++ G+F+
Sbjct: 569 SGFRLNAATYTMMIDWCSSIQCYKTACALVSMMLRDGFYPQTETYTALIKVLMEDGNFEA 628
Query: 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657
ALNLLD S EGI DVLLYNTI++KA + RIDVIE I+EQMH+ ++PD TC++VFS
Sbjct: 629 ALNLLDQGSSEGIQPDVLLYNTIIRKAMLERRIDVIELIVEQMHRENIKPDSVTCNYVFS 688
Query: 658 GYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDF-EDLILAEDSEAESRILQFCEDS 716
YV CGFHN+AMEALQVLS+ M+ EE +L++KR++ ED I +ED EAESRIL++
Sbjct: 689 TYVECGFHNTAMEALQVLSLWMIEEEEDSLQQKRAELEEDFIYSEDQEAESRILEYFVGC 748
Query: 717 NENLAFTAALLQLRWCTIVGFPISWSLDRASGLEDSQTNSNSRKQEI 763
EN+A +LL LRWC I+G+PISWS + TN +RK+E+
Sbjct: 749 RENIA--VSLLNLRWCAILGYPISWSPNETLWARRLSTNYCTRKEEL 793
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224057555|ref|XP_002299265.1| predicted protein [Populus trichocarpa] gi|222846523|gb|EEE84070.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/730 (59%), Positives = 527/730 (72%), Gaps = 74/730 (10%)
Query: 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117
QIV AL GERSRAS LLL LG SL +F IL YCARSPDPL V+ETW++MEEKE
Sbjct: 1 QIVSALHMGERSRASALLLELGQEKMSLKPHNFVPILQYCARSPDPLLVLETWQIMEEKE 60
Query: 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHA 177
+GL++KCYLLM++ALCKGGYLEEASN+I F+GE +GIYP LPVYN+FLGAC+ + +A
Sbjct: 61 VGLDSKCYLLMIRALCKGGYLEEASNMIDFIGESHGIYPTLPVYNTFLGACSDMSRADYA 120
Query: 178 NLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237
+ CL LM+ RM+GK+EVTY LLKLAV Q+NLSAV+EIWEDYIKH+S SI +L+KF+WSF
Sbjct: 121 DQCLQLMERRMMGKDEVTYIMLLKLAVSQQNLSAVYEIWEDYIKHFSPSILTLQKFIWSF 180
Query: 238 TRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI---------------- 281
TRLRDLKSAYE LQHMV LA+ G ++ +S G+L SR+++PI
Sbjct: 181 TRLRDLKSAYEKLQHMVVLAIRGNTFVQTSSRGQLYPSRVNVPIHPNCELGLQKFDLKDN 240
Query: 282 ----PLNA------------LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325
PL+A +P ++LRWSF+DVIHAC + + GLA+QLMLQ
Sbjct: 241 EQSVPLSANASAFGLDKRKIMPFSRILRWSFNDVIHACAQAKKPGLAKQLMLQ------- 293
Query: 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385
LK MQQ NLKP D T+AT+SV CSKALELDLAE L
Sbjct: 294 -------------------------LKTMQQKNLKPCDPTLATISVACSKALELDLAEVL 328
Query: 386 LDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNA 444
LDQI+ C P P+++FL ACD MD+PERA+++ AKM++ K++PDIRTY+ LFSL GN NA
Sbjct: 329 LDQITNCPYPYPYNSFLEACDAMDQPERAVRMLAKMKKLKIQPDIRTYQQLFSLVGNTNA 388
Query: 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY----- 499
PYE+G+M S+VDSAKRI AIE DMA+N +QHS SMKNLLKALG EGM+REL+QY
Sbjct: 389 PYEDGDMLSRVDSAKRIKAIEKDMAKNGVQHSRESMKNLLKALGKEGMMRELMQYLGVAE 448
Query: 500 --FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
F S T LG P YNTVLHSLVEA+E A+ +FK MK G PNAATY IMIDCC I
Sbjct: 449 DLFYHSNTHLGIPIYNTVLHSLVEAEECRMAIALFKHMKASGFEPNAATYCIMIDCCRTI 508
Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
RC+KSA ALVSMM+R GFY QT+ YTALIKILL +FDEALNLLD E I DVLLY
Sbjct: 509 RCYKSACALVSMMLRSGFYLQTVGYTALIKILLQDENFDEALNLLDQGHSEEIKLDVLLY 568
Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677
N +L A +KGRID+IE I+EQMH+ K+QPD +TC+ VF+ YV CGFHN AMEALQVLSM
Sbjct: 569 NPVLHVAKDKGRIDIIELIVEQMHREKIQPDTTTCNNVFTAYVYCGFHNMAMEALQVLSM 628
Query: 678 RMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVGF 737
RM+ +E LEEK+++ EDLIL+ED EAESRIL+ +D EN+A ALL LR C I+GF
Sbjct: 629 RMISQEDCVLEEKKAELEDLILSEDKEAESRILEHFKDFEENIA--VALLNLRNCAILGF 686
Query: 738 PISWSLDRAS 747
PISWS ++++
Sbjct: 687 PISWSPNKSA 696
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334183937|ref|NP_001185409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332197699|gb|AEE35820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/756 (56%), Positives = 554/756 (73%), Gaps = 54/756 (7%)
Query: 37 SRTLTTTMGLNE----ESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH 92
SR++TT +G NE + SK Q+QIVDAL GER AS LL L ++SL ADDF
Sbjct: 43 SRSVTTMIG-NEFIRCQDESKILQLQIVDALRSGERQGASALLFKLIQGNYSLSADDFHD 101
Query: 93 ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152
IL YCARSPDP+ T+ +M +KEI L+++ L ++++LC GG+L++AS I+ + E
Sbjct: 102 ILYYCARSPDPV----TYSVMCKKEISLDSRSLLFIVKSLCNGGHLDKASEFIHAVREDD 157
Query: 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212
I P+LP+YN FLGACA+ S+ HA+ CL+LMD R VGKN +TY LLKLAV+Q+NLS V
Sbjct: 158 RISPLLPIYNFFLGACARTRSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTV 217
Query: 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL 272
++IW+ Y+ HY+L I SLR+F+WSFTRL DLKSAYE LQHMV LA+ G+ ++ +++ G+L
Sbjct: 218 NDIWKHYVNHYNLDILSLRRFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKL 276
Query: 273 RSSRLDIPIPLN-------------------------ALP-------VMKVLRWSFSDVI 300
S+RL IP+P ALP ++VLRWSF+DVI
Sbjct: 277 HSTRLYIPVPSKDETGSEKFAFGVTDRIVDCNSSSKVALPKGHNKILAIRVLRWSFNDVI 336
Query: 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360
HACG+++NS LAEQLMLQMQ+LGL PSSHTYDGFIRA+ G GM +LK+MQQ NLK
Sbjct: 337 HACGQSKNSELAEQLMLQMQNLGLLPSSHTYDGFIRAVAFPEGYEYGMTLLKVMQQQNLK 396
Query: 361 PQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAK 420
P DST+AT++ CSKAL++DLAE LLDQIS C+ PF+ LAA D++D+PERA+++ A+
Sbjct: 397 PYDSTLATVAAYCSKALQVDLAEHLLDQISECSYSYPFNNLLAAYDSLDQPERAVRVLAR 456
Query: 421 MRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHIS 479
M++ KLRPD+RTYELLFSLFGNVNAPYEEGNM SQVD KRINAIEMDM RN QHS IS
Sbjct: 457 MKELKLRPDMRTYELLFSLFGNVNAPYEEGNMLSQVDCCKRINAIEMDMMRNGFQHSPIS 516
Query: 480 MKNLLKALGAEGMIRELIQYF-------CDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532
N+L+ALGAEGM+ E+I++ S LGTPTYN VLHSL+EA E+ + IF
Sbjct: 517 RLNVLRALGAEGMVNEMIRHLQKAENLSAHSNMYLGTPTYNIVLHSLLEANETDMVINIF 576
Query: 533 KQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592
K+MK+CG P + ATYNIMIDCCS+I +KSA ALVSMM+RDGF P+ +T+TAL+KILL+
Sbjct: 577 KRMKSCGCPADVATYNIMIDCCSLIHSYKSACALVSMMIRDGFSPKAVTFTALMKILLND 636
Query: 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652
+F+EALNLLD +LE I DVL YNTIL+KA EKG IDVIE+I+EQMH+ KV PDP+TC
Sbjct: 637 ANFEEALNLLDQAALEEIHLDVLSYNTILRKAFEKGMIDVIEYIVEQMHREKVNPDPTTC 696
Query: 653 HFVFSGYVNCGFHNSAMEALQVLSMRMLCEE-VSTLEEKRSDFED-LILAEDSEAESRIL 710
H+VFS YV G+H +A+EAL VLS+RML EE +L++K+ + E+ +++ED EAE++I+
Sbjct: 697 HYVFSCYVEKGYHATAIEALNVLSLRMLNEEDKESLQDKKIELEENFVMSEDPEAETKII 756
Query: 711 QFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDRA 746
+ S E+LA AALL LRWC ++G I WS D++
Sbjct: 757 ELFRKSEEHLA--AALLNLRWCAMLGGRIIWSEDQS 790
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449503243|ref|XP_004161905.1| PREDICTED: pentatricopeptide repeat-containing protein At1g76280-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/788 (55%), Positives = 561/788 (71%), Gaps = 61/788 (7%)
Query: 5 LLRTRFQL--IADSFCKSKFHKHERRNVANKLELSRTLTTTMGL----NEESISKATQMQ 58
LR F+L IADS + K H+H R+ A+KL R L + G N + QMQ
Sbjct: 16 FLRASFRLGSIADSIYRFKPHEHVRKQDASKLVFHRALLISSGSEIWGNGAESTAFMQMQ 75
Query: 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI 118
IV+AL G+RSRAS+LL+ LG SL AD+F IL+YCA+SPDPLFVMETW++MEE+ I
Sbjct: 76 IVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIMEERGI 135
Query: 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178
LNN C LLM++ALCKGGYL+EA LI FL E + ++P LP YN FL ACA SMVHA+
Sbjct: 136 FLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSMVHAS 195
Query: 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238
CLDLMD +MVGKNE TY+ELLKLAV QKNLS+VHEIW D++K+YS S+ SLRKF+WS+
Sbjct: 196 QCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFIWSYA 255
Query: 239 RLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA------------- 285
R+ D+KSAY LQ MV L N + GR S LDIPIP
Sbjct: 256 RMGDVKSAYTALQKMVTL--------NNGAAGRKLQS-LDIPIPSRTELYRGISVSGIKC 306
Query: 286 ---------LP-------VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329
+P V KVLRWS +DV+ AC N GLAEQLM QM LGLQPSSH
Sbjct: 307 GEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCGLAEQLMQQMHKLGLQPSSH 366
Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQI 389
T+DGF+R++VS+RG GME+LK+MQQ L+P DST+A +SV CSKALELDLAEALL+++
Sbjct: 367 TFDGFVRSVVSERGFSAGMEILKVMQQRGLEPYDSTLAAVSVSCSKALELDLAEALLERL 426
Query: 390 SRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEE 448
S C P PF+AF +ACD MD+PERA+++ KM+Q K+ PD+RTYELL+SLFGNVNAPYEE
Sbjct: 427 SACPYPYPFNAFFSACDMMDQPERAMRMLVKMKQMKVAPDVRTYELLYSLFGNVNAPYEE 486
Query: 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQY-------FC 501
G+ SQVD+AKR+ IEMDM ++ IQ+SH SM NLLKALG EGM +E++QY F
Sbjct: 487 GDNLSQVDAAKRVRMIEMDMGKHGIQYSHFSMMNLLKALGTEGMKKEVLQYLNLAENLFY 546
Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFK 561
+ T LG P YNTVLH LV+++E+H A+E+F MK G P+AAT+ +M+DCCS+I C K
Sbjct: 547 YNNTSLGMPVYNTVLHFLVDSKETHMAIELFNNMKRSGFFPDAATFEMMLDCCSVIGCLK 606
Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
SA AL+S+M+R GF PQ +TYT+L+KI+L + FD+ALNLLD S EGI DV++ NTI+
Sbjct: 607 SAFALLSLMIRSGFCPQILTYTSLVKIVLGFERFDDALNLLDQASSEGIELDVIIMNTIM 666
Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM-L 680
+KACEK RIDVIEF++E+M++ K+ PDPSTC VFS YVN G+H++AMEALQVLSMRM L
Sbjct: 667 RKACEKARIDVIEFLVEKMNREKIPPDPSTCQNVFSTYVNLGYHSTAMEALQVLSMRMLL 726
Query: 681 CEE--VSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVGFP 738
CEE S E E+ +LAED+ A+SRI +F + S E L+F AL LRWC ++G+P
Sbjct: 727 CEEDDASVTEY----MENFVLAEDTGADSRIAEFFKCSREYLSF--ALFNLRWCAMLGYP 780
Query: 739 ISWSLDRA 746
+ ++ +++
Sbjct: 781 VCYAPNQS 788
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6573717|gb|AAF17637.1|AC009978_13 T23E18.21 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/780 (54%), Positives = 547/780 (70%), Gaps = 88/780 (11%)
Query: 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWR 111
SK Q+QIVDAL GER AS LL L ++SL ADDF IL YCARSPDP+FVMET+
Sbjct: 13 SKILQLQIVDALRSGERQGASALLFKLIQGNYSLSADDFHDILYYCARSPDPVFVMETYS 72
Query: 112 MMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171
+M +KEI L+++ L ++++LC GG+L++AS I+ + E I P+LP+YN FLGACA+
Sbjct: 73 VMCKKEISLDSRSLLFIVKSLCNGGHLDKASEFIHAVREDDRISPLLPIYNFFLGACART 132
Query: 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231
S+ HA+ CL+LMD R VGKN +TY LLKLAV+Q+NLS V++IW+ Y+ HY+L I SLR
Sbjct: 133 RSVYHASKCLELMDQRRVGKNGITYVALLKLAVFQRNLSTVNDIWKHYVNHYNLDILSLR 192
Query: 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN------- 284
+F+WSFTRL DLKSAYE LQHMV LA+ G+ ++ +++ G+L S+RL IP+P
Sbjct: 193 RFIWSFTRLGDLKSAYELLQHMVYLALRGEFFV-KSNRGKLHSTRLYIPVPSKDETGSEK 251
Query: 285 ------------------ALP-------VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319
ALP ++VLRWSF+DVIHACG+++NS LAEQLMLQM
Sbjct: 252 FAFGVTDRIVDCNSSSKVALPKGHNKILAIRVLRWSFNDVIHACGQSKNSELAEQLMLQM 311
Query: 320 QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL 379
Q+LGL PSSHTYDGFIRA+ G GM +LK+MQQ NLKP DST+AT++ CSKAL++
Sbjct: 312 QNLGLLPSSHTYDGFIRAVAFPEGYEYGMTLLKVMQQQNLKPYDSTLATVAAYCSKALQV 371
Query: 380 DLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSL 438
DLAE LLDQIS C+ PF+ LAA D++D+PERA+++ A+M++ KLRPD+RTYELLFSL
Sbjct: 372 DLAEHLLDQISECSYSYPFNNLLAAYDSLDQPERAVRVLARMKELKLRPDMRTYELLFSL 431
Query: 439 FGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL--------------L 484
FGNVNAPYEEGNM SQVD KRINAIEMDM RN QHS IS N+ L
Sbjct: 432 FGNVNAPYEEGNMLSQVDCCKRINAIEMDMMRNGFQHSPISRLNVNNGLIVYTFLFLSQL 491
Query: 485 KALGAEGMIRELIQYF-------CDSKTPLGTPTYNTVLHSLVEAQE------------- 524
+ALGAEGM+ E+I++ S LGTPTYN VLHSL+EA E
Sbjct: 492 RALGAEGMVNEMIRHLQKAENLSAHSNMYLGTPTYNIVLHSLLEANEVSFHGLIALSNFH 551
Query: 525 ----------------SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS 568
+ + IFK+MK+CG P + ATYNIMIDCCS+I +KSA ALVS
Sbjct: 552 WTSIYSNIDRYLNYMQTDMVINIFKRMKSCGCPADVATYNIMIDCCSLIHSYKSACALVS 611
Query: 569 MMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628
MM+RDGF P+ +T+TAL+KILL+ +F+EALNLLD +LE I DVL YNTIL+KA EKG
Sbjct: 612 MMIRDGFSPKAVTFTALMKILLNDANFEEALNLLDQAALEEIHLDVLSYNTILRKAFEKG 671
Query: 629 RIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE-VSTL 687
IDVIE+I+EQMH+ KV PDP+TCH+VFS YV G+H +A+EAL VLS+RML EE +L
Sbjct: 672 MIDVIEYIVEQMHREKVNPDPTTCHYVFSCYVEKGYHATAIEALNVLSLRMLNEEDKESL 731
Query: 688 EEKRSDFED-LILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDRA 746
++K+ + E+ +++ED EAE++I++ S E+LA AALL LRWC ++G I WS D++
Sbjct: 732 QDKKIELEENFVMSEDPEAETKIIELFRKSEEHLA--AALLNLRWCAMLGGRIIWSEDQS 789
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443982|ref|XP_004139754.1| PREDICTED: pentatricopeptide repeat-containing protein At1g76280-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/807 (53%), Positives = 559/807 (69%), Gaps = 71/807 (8%)
Query: 5 LLRTRFQL--IADSFCKSKFHKHERRNVANKLELSRTLTTTMGL----NEESISKATQMQ 58
LR F+L IADS + K H+H R+ A+KL R L + G N + QMQ
Sbjct: 16 FLRASFRLGSIADSIYRFKPHEHVRKQDASKLVFHRALLISSGSEIWGNGAESTAFMQMQ 75
Query: 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI 118
IV+AL G+RSRAS+LL+ LG SL AD+F IL+YCA+SPDPLFVMETW++MEE+ I
Sbjct: 76 IVNALRLGDRSRASNLLMVLGQEKFSLTADNFVRILSYCAKSPDPLFVMETWKIMEERGI 135
Query: 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178
LNN C LLM++ALCKGGYL+EA LI FL E + ++P LP YN FL ACA SMVHA+
Sbjct: 136 FLNNTCSLLMIEALCKGGYLDEAFGLINFLAESHVMFPALPAYNCFLRACAIRQSMVHAS 195
Query: 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238
CLDLMD +MVGKNE TY+ELLKLAV QKNLS+VHEIW D++K+YS S+ SLRKF+WS+
Sbjct: 196 QCLDLMDHKMVGKNEATYSELLKLAVCQKNLSSVHEIWRDFVKNYSPSVSSLRKFIWSYA 255
Query: 239 RLRDLKSAYETLQHMVAL------------------------------------------ 256
R+ D+KSAY LQ MV L
Sbjct: 256 RMGDVKSAYTALQKMVTLNNGAAGRKLQSLDIPIPSRTELYRYNFNFEEKEPSIDEFFYK 315
Query: 257 ------AMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSG 310
+G + ++ G + + L +P + V KVLRWS +DV+ AC N G
Sbjct: 316 KMVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCG 375
Query: 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370
LAEQLM QM LGLQPSSHT+DGF+R++VS+RG GME+LK+MQQ L+P DST+A +S
Sbjct: 376 LAEQLMQQMHKLGLQPSSHTFDGFVRSVVSERGFSAGMEILKVMQQRGLEPYDSTLAAVS 435
Query: 371 VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDI 429
V CSKALELDLAEALL+++S C P PF+AF +ACD MD+PERA+++ KM+Q K+ PD+
Sbjct: 436 VSCSKALELDLAEALLERLSACPYPYPFNAFFSACDMMDQPERAMRMLVKMKQMKVAPDV 495
Query: 430 RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA 489
RTYELL+SLFGNVNAPYEEG+ SQVD+AKR+ IEMDM ++ IQ+SH SM NLLKALG
Sbjct: 496 RTYELLYSLFGNVNAPYEEGDNLSQVDAAKRVRMIEMDMGKHGIQYSHFSMMNLLKALGT 555
Query: 490 EGMIRELIQY-------FCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
EGM +E++QY F + T LG P YNTVLH LV+++E+H A+E+F MK G P
Sbjct: 556 EGMKKEVLQYLNLAENLFYYNNTSLGMPVYNTVLHFLVDSKETHMAIELFNNMKRSGFFP 615
Query: 543 NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLL 602
+AAT+ +M+DCCS+I C KSA AL+S+M+R GF PQ +TYT+L+KI+L + FD+ALNLL
Sbjct: 616 DAATFEMMLDCCSVIGCLKSAFALLSLMIRSGFCPQILTYTSLVKIVLGFERFDDALNLL 675
Query: 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNC 662
D S EGI DV++ NTI++KACEK RIDVIEF++E+M++ K+ PDPSTC VFS YVN
Sbjct: 676 DQASSEGIELDVIIMNTIMRKACEKARIDVIEFLVEKMNREKIPPDPSTCQNVFSTYVNL 735
Query: 663 GFHNSAMEALQVLSMRM-LCEE--VSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNEN 719
G+H++AMEALQVLSMRM LCEE S E E+ +LAED+ A+SRI +F + S E
Sbjct: 736 GYHSTAMEALQVLSMRMLLCEEDDASVTEY----MENFVLAEDTGADSRIAEFFKCSREY 791
Query: 720 LAFTAALLQLRWCTIVGFPISWSLDRA 746
L+F AL LRWC ++G+ + +S +++
Sbjct: 792 LSF--ALFNLRWCAMLGYSVCYSPNQS 816
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 764 | ||||||
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.679 | 0.823 | 0.212 | 3.1e-19 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.447 | 0.542 | 0.232 | 1.8e-17 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.401 | 0.532 | 0.246 | 8.4e-17 | |
| TAIR|locus:2061310 | 918 | GUN1 "AT2G31400" [Arabidopsis | 0.341 | 0.284 | 0.281 | 1.2e-16 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.447 | 0.543 | 0.237 | 2.2e-16 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.678 | 0.843 | 0.205 | 7.3e-16 | |
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.430 | 0.295 | 0.212 | 8.8e-16 | |
| TAIR|locus:2098495 | 880 | AT3G07290 "AT3G07290" [Arabido | 0.445 | 0.386 | 0.211 | 9.2e-16 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.320 | 0.335 | 0.247 | 1.3e-15 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.578 | 0.586 | 0.202 | 2.3e-15 |
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 263 (97.6 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 116/546 (21%), Positives = 221/546 (40%)
Query: 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214
+P + ++ L A AK++ + M + + N TY+ L+ + LS
Sbjct: 78 FPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALA 137
Query: 215 IWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY-INRTSEGRL 272
+ +K Y I +L + F + A + MV + + N G
Sbjct: 138 VLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLF 197
Query: 273 RSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEXXXXXXXXXXXXXXXH 329
R +R + L V+K + ++ V++ + + LA
Sbjct: 198 RHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVV 257
Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKXXXXXXXXXXXXQ 388
Y+ I A+ + + + + + + M ++P T +L C+
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317
Query: 389 ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAP 445
I R NP FSA + A K A K++ +M ++ + PDI TY L + F
Sbjct: 318 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC----- 372
Query: 446 YEEGNMFSQVDSAKRINA--IEMDMARNNIQHSHISMKNLLKALGA-EGMIRELIQYFCD 502
M ++D AK + I D N + ++ + +K KA EGM EL +
Sbjct: 373 -----MHDRLDEAKHMFELMISKDCFPNVVTYNTL-IKGFCKAKRVDEGM--ELFREMSQ 424
Query: 503 SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFK 561
T TY T++H +A+E A +FKQM + G+ P+ TY+I++D C+ + +
Sbjct: 425 RGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKV-E 483
Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
+A + + R P TY +I+ + G ++ +L +SL+G+ +V+ Y T++
Sbjct: 484 TALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMM 543
Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
C KG + + + +M + PD T + + ++ G ++ E ++ +
Sbjct: 544 SGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFV 603
Query: 682 EEVSTL 687
+ ST+
Sbjct: 604 GDASTI 609
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 85/366 (23%), Positives = 163/366 (44%)
Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKXXXXXXXXXXXXQI 389
Y+ I + + + + + + K M+ ++P T ++L S C+ I
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318
Query: 390 SRCTNPKPFSAFLAACDTMDKPERAI---KIFAKM-RQKLRPDIRTYELLFSLFGNVNAP 445
R NP F+ F A D K + + K++ +M ++ + P I TY L + F
Sbjct: 319 ERKINPDVFT-FSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC----- 372
Query: 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SK 504
M ++D AK++ E M + ++ L+K + E ++ F + S+
Sbjct: 373 -----MHDRLDEAKQM--FEF-MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQ 424
Query: 505 TPL--GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFK 561
L T TYN ++ L +A + A EIFK+M + G+PPN TYN ++D C + K
Sbjct: 425 RGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEK 484
Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
A + + R P TY +I+ + G ++ +L +SL+G+ DV+ YNT++
Sbjct: 485 -AMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMI 543
Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
C KG + + + ++M ++ P+ + + + G ++ E ++ +
Sbjct: 544 SGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFA 603
Query: 682 EEVSTL 687
+ ST+
Sbjct: 604 GDASTI 609
|
|
| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 240 (89.5 bits), Expect = 8.4e-17, P = 8.4e-17
Identities = 81/329 (24%), Positives = 149/329 (45%)
Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKXXXXXXXXXXXXQI 389
Y I ++ R + + + M+ ++P T ++L S C+ I
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMI 322
Query: 390 SRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPY 446
R NP F+A + A K A K++ +M ++ + PDI TY L + F
Sbjct: 323 ERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC------ 376
Query: 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SKT 505
M ++D AK + E+ ++++ + ++ L+ I E ++ F + S+
Sbjct: 377 ----MHDRLDEAKHM--FELMISKDCFPNV-VTYNTLINGFCKAKRIDEGVELFREMSQR 429
Query: 506 PL--GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFKS 562
L T TY T++H +A++ A +FKQM + G+ PN TYN ++D C + K
Sbjct: 430 GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEK- 488
Query: 563 ASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK 622
A + + R P TY +I+ + G ++ +L +SL+G+ DV++YNT++
Sbjct: 489 AMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMIS 548
Query: 623 KACEKGRIDVIEFIIEQMHQNKVQPDPST 651
C KG + + + +M ++ PD T
Sbjct: 549 GFCRKGLKEEADALFRKMREDGPLPDSGT 577
|
|
| TAIR|locus:2061310 GUN1 "AT2G31400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 242 (90.2 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 78/277 (28%), Positives = 126/277 (45%)
Query: 398 FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVD 456
FSA ++A E AI +F M++ LRP++ TY + G + G F QV
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACG------KGGMEFKQV- 323
Query: 457 SAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGM---IRELIQYFCDSKTPLGTPTYN 513
AK + +M RN +Q I+ +LL G+ R L + + +YN
Sbjct: 324 -AKFFD----EMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYN 378
Query: 514 TVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573
T+L ++ + + A EI QM I PN +Y+ +ID + F A L M
Sbjct: 379 TLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL 438
Query: 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI 633
G ++Y L+ I G +EAL++L ++ GI DV+ YN +L ++G+ D +
Sbjct: 439 GIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEV 498
Query: 634 EFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAME 670
+ + +M + V P+ T + GY G + AME
Sbjct: 499 KKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAME 535
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 241 (89.9 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 87/366 (23%), Positives = 162/366 (44%)
Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKXXXXXXXXXXXXQI 389
Y I A+ + + + + + + M ++P T +L C+ I
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 317
Query: 390 SRCTNPK--PFSAFLAACDTMDKPERAIKIFAKM-RQKLRPDIRTYELLFSLFGNVNAPY 446
R NP FSA + A K A K++ +M ++ + PDI TY L + F
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC------ 371
Query: 447 EEGNMFSQVDSAKRINA--IEMDMARNNIQHSHISMKNLLKALGAE-GMIRELIQYFCDS 503
M ++D AK + I D N + ++ + +K KA E GM EL +
Sbjct: 372 ----MHDRLDEAKHMFELMISKDCFPNVVTYNTL-IKGFCKAKRVEEGM--ELFREMSQR 424
Query: 504 KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563
T TYNT++ L +A + A +IFK+M + G+PP+ TY+I++D + + K
Sbjct: 425 GLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLD--GLCKYGKLE 482
Query: 564 SALV--SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
ALV + + P TY +I+ + G ++ +L +SL+G+ +V++Y T++
Sbjct: 483 KALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI 542
Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
C KG + + + +M ++ P+ T + + + G ++ E ++ +
Sbjct: 543 SGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFV 602
Query: 682 EEVSTL 687
+ ST+
Sbjct: 603 GDASTI 608
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 232 (86.7 bits), Expect = 7.3e-16, P = 7.3e-16
Identities = 112/545 (20%), Positives = 214/545 (39%)
Query: 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214
+P + ++ L A AK+ + M+ V N TY ++ + LS
Sbjct: 62 FPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALA 121
Query: 215 IWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS-EGRL 272
I +K Y SI +L + F + A + MV + T G
Sbjct: 122 ILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLF 181
Query: 273 RSSRLDIPIPLNALPVMKVLR---WSFSDVIHACGRTQNSGLAEXXXXXXXXXXXXXXXH 329
+ ++ + L V+K + ++ VI+ + LA
Sbjct: 182 QHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVV 241
Query: 330 TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL-SVECSKXXXXXXXXXXXXQ 388
Y I ++ R + + + + M ++P T ++L S C+
Sbjct: 242 IYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM 301
Query: 389 ISRCTNPK--PFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNAP 445
+ R NP F++ + A K A K+F +M Q+ + P+I TY L + F
Sbjct: 302 LERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFC----- 356
Query: 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD-SK 504
M ++D A++I + M + ++ L+ + + ++ F D S+
Sbjct: 357 -----MHDRLDEAQQIFTL---MVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSR 408
Query: 505 TPL--GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCFK 561
L T TY T++H +A + A +FKQM + G+ PN TYN ++D C + K
Sbjct: 409 RGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEK 468
Query: 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621
A + + + P TY + + + G ++ +L +SL+G+ DV+ YNT++
Sbjct: 469 -AMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMI 527
Query: 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681
C+KG + + +M ++ PD T + + ++ G ++ E ++ +
Sbjct: 528 SGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFA 587
Query: 682 EEVST 686
+ ST
Sbjct: 588 GDAST 592
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| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 190 (71.9 bits), Expect = 8.8e-16, Sum P(2) = 8.8e-16
Identities = 74/348 (21%), Positives = 143/348 (41%)
Query: 331 YDGFIRAIVSDRGLRNGMEVLKIMQQNNL-KPQDSTIATLSVECSKXXXXXXXXXXXXQI 389
++ I +I+++ G+ N + + + N + + DS + + K +
Sbjct: 716 WEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKF 775
Query: 390 SRCTNPKP----FSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNA 444
++ +P ++ + D E A +F +++ PD+ TY L +G
Sbjct: 776 TKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYG---- 831
Query: 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK 504
+ G + + K ++ E + N I H+ I + L+KA + + D
Sbjct: 832 --KSGKIDELFELYKEMSTHECEA--NTITHN-IVISGLVKAGNVDDALDLYYDLMSDRD 886
Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
TY ++ L ++ + A ++F+ M G PN A YNI+I+ +A
Sbjct: 887 FSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAAC 946
Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
AL MV++G P TY+ L+ L G DE L+ + G+ DV+ YN I+
Sbjct: 947 ALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGL 1006
Query: 625 CEKGRIDVIEFIIEQMHQNK-VQPDPSTCHFVFSGYVNCGFHNSAMEA 671
+ R++ + +M ++ + PD T + + +N G EA
Sbjct: 1007 GKSHRLEEALVLFNEMKTSRGITPDLYTYNSLI---LNLGIAGMVEEA 1051
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| TAIR|locus:2098495 AT3G07290 "AT3G07290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 195 (73.7 bits), Expect = 9.2e-16, Sum P(2) = 9.2e-16
Identities = 75/354 (21%), Positives = 143/354 (40%)
Query: 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI-ATLSVECSKXXXXXXXXXXXX 387
HTY I + D + V + M ++ + P T A ++ C
Sbjct: 337 HTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTV 396
Query: 388 QISRCTNP--KPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFSLFGNVNA 444
R P + F+ + + KP +A+ + +M L PDI +Y +L ++
Sbjct: 397 MEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVL------IDG 450
Query: 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK 504
EG+M + +N D+ + + + I N G + +
Sbjct: 451 LCREGHMNTAYKLLSSMNCF--DIEPDCLTFTAII--NAFCKQGKADVASAFLGLMLRKG 506
Query: 505 TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564
L T T++ + + ++ A+ I + + I + N+++D S K
Sbjct: 507 ISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEEL 566
Query: 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624
A++ + + G P +TYT L+ L+ GD + +L+L+ L G +V Y I+
Sbjct: 567 AMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGL 626
Query: 625 CEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678
C+ GR++ E ++ M + V P+ T + GYVN G + A+E ++ + R
Sbjct: 627 CQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVER 680
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| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 202 (76.2 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 62/251 (24%), Positives = 107/251 (42%)
Query: 502 DSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID-CCSIIRCF 560
D P T +N ++ + + A+EIF++M G P+ T+N +I C +
Sbjct: 453 DGLKP-NTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDE-I 510
Query: 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTI 620
K A L+ M+ +G T+TY LI L G+ EA L++ + +G P D + YN++
Sbjct: 511 KHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSL 570
Query: 621 LKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRML 680
+K C G +D + E+M ++ P +C+ + +G G A+E + + +R
Sbjct: 571 IKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGS 630
Query: 681 CEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVGFPIS 740
++ T + ED R LQ + + F + W GF
Sbjct: 631 TPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLM---SWLCKGGFVYD 687
Query: 741 WSLDRASGLED 751
L G+ED
Sbjct: 688 ACLLLDEGIED 698
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| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 229 (85.7 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 98/484 (20%), Positives = 198/484 (40%)
Query: 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT-------RLRDLKSAYE 248
Y +L L V +L V I H +S++ ++ V +F R L+ A
Sbjct: 157 YNRMLNLLVDGNSLKLVE------ISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAIL 210
Query: 249 TLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS---FSDVIHA-C 303
L+ M + ++ + +G + LD + + V WS + ++H C
Sbjct: 211 MLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFC 270
Query: 304 --GRTQNSGLAEXXXXXXXXXXXXXXXHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361
GR +++ +T++ + + +++ +E++ +M Q P
Sbjct: 271 KEGRVEDA--LNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDP 328
Query: 362 QDSTI-ATLSVECSKXXXXXXXXXXXXQISR-CT-NPKPFSAFLAACDTMDKPERAIKIF 418
T + +S C I+R C+ N ++ ++ ++ E A ++
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388
Query: 419 AKMRQK-LRPDIRTYELLFS---LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474
+ K + PD+ T+ L L N E +F ++ R E D N+
Sbjct: 389 RVLTSKGILPDVCTFNSLIQGLCLTRNHRVAME---LFEEM----RSKGCEPDEFTYNML 441
Query: 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQ 534
+ K L A M++++ C +++ + TYNT++ +A ++ A EIF +
Sbjct: 442 IDSLCSKGKLDE--ALNMLKQMELSGC-ARSVI---TYNTLIDGFCKANKTREAEEIFDE 495
Query: 535 MKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGD 594
M+ G+ N+ TYN +ID R + A+ L+ M+ +G P TY +L+ GD
Sbjct: 496 MEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGD 555
Query: 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHF 654
+A +++ ++ G D++ Y T++ C+ GR++V ++ + + P +
Sbjct: 556 IKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNP 615
Query: 655 VFSG 658
V G
Sbjct: 616 VIQG 619
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SGQ6 | PP126_ARATH | No assigned EC number | 0.5436 | 0.8821 | 0.8719 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00015570001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (768 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 764 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 2e-12
Identities = 82/378 (21%), Positives = 165/378 (43%), Gaps = 53/378 (14%)
Query: 285 ALPVMKVLRWS--------FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIR 336
AL V+++++ + ++ +I C ++ ++ +M + G++ + HT+ I
Sbjct: 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI- 514
Query: 337 AIVSDRGLRNGMEVLK------IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390
D R G +V K IM+ N+KP L C ++ +D A +L ++
Sbjct: 515 ----DGCARAG-QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569
Query: 391 RCTNP-KP----FSAFLAACDTMDKPERAIKIFAKMRQ---KLRPDIRTYELLFSLFGNV 442
T+P P A + AC + +RA +++ + + K P++ T V
Sbjct: 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA--------V 621
Query: 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD 502
N+ ++G+ D A +I DM + ++ + L+ G G + + + D
Sbjct: 622 NSCSQKGD----WDFAL---SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674
Query: 503 SKT---PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC 559
++ LGT +Y++++ + A+ +A+E+++ +K+ + P +T N +I
Sbjct: 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734
Query: 560 FKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619
A ++S M R G P T+TY+ L+ D D L+LL +GI ++++
Sbjct: 735 LPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC 794
Query: 620 I-------LKKACEKGRI 630
I +KAC G
Sbjct: 795 ITGLCLRRFEKACALGEP 812
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Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 5e-12
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCC 554
TYNT++ + + A+++F +MK GI PN TY+I+ID
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
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This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-07
Identities = 69/334 (20%), Positives = 127/334 (38%), Gaps = 47/334 (14%)
Query: 322 LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDL 381
L P+ T++ + S + + + VL+++Q+ LK TL C+K+ ++D
Sbjct: 431 LIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490
Query: 382 AEALLDQISRC---TNPKPFSAFLAACDTMDKPERAIKIFAKMRQK-LRPDIRTYELLFS 437
+ ++ N F A + C + +A + MR K ++PD + L S
Sbjct: 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550
Query: 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI 497
G A VD A + A EM + I HI++ L+KA
Sbjct: 551 ACGQSGA----------VDRAFDVLA-EMKAETHPIDPDHITVGALMKA----------- 588
Query: 498 QYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557
C A + RA E+++ + I Y I ++ CS
Sbjct: 589 ---C------------------ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627
Query: 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617
+ A ++ M + G P + ++AL+ + GD D+A +L +GI + Y
Sbjct: 628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687
Query: 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPST 651
++++ + E + K++P ST
Sbjct: 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721
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Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 9e-06
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587
P+ TYN +ID + A L + M + G P TY+ LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
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This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 1e-04
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA 544
TYNT++ L +A A+E+FK+MK GI P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
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This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 7e-04
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542
TYN +L +L +A + A+ + ++MK G+ P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
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This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.001
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625
P +TY LI G +EAL L + + GI +V Y+ ++ C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
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This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 764 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.79 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.77 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.73 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.65 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.63 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.62 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.61 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.59 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.53 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.51 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.47 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.47 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.46 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.43 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.43 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.39 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.38 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.36 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.35 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.35 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.34 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.34 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.34 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.28 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.27 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.27 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.26 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.25 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.23 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.23 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.21 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.17 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.16 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.15 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.1 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.1 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.09 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.08 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.06 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.06 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.02 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.0 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.0 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.0 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.97 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.97 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.94 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.93 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.91 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.89 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.88 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.86 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.85 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.85 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.85 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.81 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.77 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.76 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.75 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.74 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.67 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.62 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.59 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.59 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.53 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.52 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.51 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.5 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.47 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.46 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.45 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.42 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.42 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.39 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.37 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.34 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.33 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.32 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.28 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.26 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.24 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.24 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.23 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.21 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.13 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.09 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.07 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.04 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.02 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.02 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.02 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.02 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.01 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.0 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.98 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.96 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.96 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.95 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.93 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.9 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.89 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.89 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.87 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.85 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.73 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.73 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.72 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.7 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.69 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.69 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.66 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.65 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.62 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.62 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.61 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.61 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.6 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.53 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.53 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.48 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.43 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.42 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.34 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.24 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.21 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.19 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.15 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.14 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.1 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.04 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.04 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 96.96 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.96 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.92 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.92 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.91 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.91 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.88 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.87 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.84 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.83 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.83 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.8 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.8 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.77 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.75 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.75 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.74 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.69 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.68 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.67 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.59 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.55 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.53 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.52 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.49 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.41 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.38 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.36 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.33 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.29 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.28 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.28 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.27 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.26 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.08 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.0 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.96 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.94 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.89 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.89 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.82 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.8 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.78 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.75 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.73 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.73 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.67 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.67 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.55 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.52 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.5 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.49 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.49 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.48 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.44 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.32 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.27 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.14 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.1 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.07 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.04 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.02 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.98 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.8 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.73 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.68 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.59 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.4 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.23 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.22 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.16 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.16 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.13 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.02 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.99 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.95 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.73 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.58 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.53 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.4 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.22 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.07 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.02 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.96 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.9 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.69 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.6 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.35 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.16 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.05 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 91.91 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.67 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.58 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 91.52 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.11 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 90.87 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.21 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.15 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.92 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 89.8 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.79 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.56 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.2 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 89.19 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 88.85 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 88.57 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.51 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.33 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.96 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 87.34 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.1 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 87.06 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 86.56 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.34 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.02 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 85.91 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 85.88 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 85.71 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.51 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 85.37 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.13 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 85.04 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 84.67 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 84.62 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 84.51 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 83.88 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.73 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 83.55 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 83.25 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 80.46 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-88 Score=773.29 Aligned_cols=658 Identities=15% Similarity=0.155 Sum_probs=609.6
Q ss_pred hHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChh
Q 004269 9 RFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGAD 88 (764)
Q Consensus 9 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 88 (764)
....++..|++.|+.++|. .+|+++ |++...+|+.+|.+|++.|++++|+++|++|...|+.||..
T Consensus 123 ~~n~li~~~~~~g~~~~A~-~~f~~m-------------~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~ 188 (857)
T PLN03077 123 LGNAMLSMFVRFGELVHAW-YVFGKM-------------PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY 188 (857)
T ss_pred HHHHHHHHHHhCCChHHHH-HHHhcC-------------CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh
Confidence 3456888899999999999 666655 33457789999999999999999999999999999999999
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHH
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 168 (764)
||+.++++|+..+++..+.+++..|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+ ||..+||+||.+|
T Consensus 189 t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~ 263 (857)
T PLN03077 189 TFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGY 263 (857)
T ss_pred HHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999963 6889999999999
Q ss_pred hccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh-cCCCCHhhHHHHHHHhhccCCHHHHH
Q 004269 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
++.|++++|+++|++|.+.|+.||..||+.++.+|.+.|+++.+.+++..+.+ +..||..+|++|+.+|+++|++++|.
T Consensus 264 ~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~ 343 (857)
T PLN03077 264 FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343 (857)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999997 69999999999999999999999999
Q ss_pred HHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 004269 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS 327 (764)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 327 (764)
++|++|.+ |+. .+||++|.+|++.|++++|+++|++|.+.|+.||
T Consensus 344 ~vf~~m~~----~d~-------------------------------~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 344 KVFSRMET----KDA-------------------------------VSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHhhCCC----CCe-------------------------------eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 99999964 444 6999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Q 004269 328 SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDT 407 (764)
Q Consensus 328 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~ 407 (764)
..||++++.+|++.|+++.|.++++.|.+.|+.|+..++++|+++|+++|++++|.++|++|.+. |.++||++|.+|++
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~vs~~~mi~~~~~ 467 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRL 467 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987 99999999999999
Q ss_pred cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 004269 408 MDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKAL 487 (764)
Q Consensus 408 ~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 487 (764)
.|+.++|+.+|++|..+++||..||+.+|.+|++.|.+ +.+..++..+.+.|+.++..++|+|+++|
T Consensus 468 ~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l-------------~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 468 NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGAL-------------MCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchH-------------HHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 99999999999999889999999999999999998765 55667888999999999999999999999
Q ss_pred HhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHH
Q 004269 488 GAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALV 567 (764)
Q Consensus 488 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 567 (764)
+++|++++|.++|+.+ .+|.++||++|.+|+++|+.++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|
T Consensus 535 ~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred HHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHH
Confidence 9999999999999998 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004269 568 SMMV-RDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646 (764)
Q Consensus 568 ~~~~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 646 (764)
+.|. +.|+.|+..+|++++++|++.|++++|.+++++| +++||..+|++|+.+|..+|+.+.++...+++.+ +.
T Consensus 613 ~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~ 687 (857)
T PLN03077 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LD 687 (857)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hC
Confidence 9999 6799999999999999999999999999999998 4799999999999999999999999999999885 67
Q ss_pred CCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHhhhcccc-CchHhhhHHHHHhhhhccHHH-------------------
Q 004269 647 PDPSTCHF-VFSGYVNCGFHNSAMEALQVLSMRMLCEEV-STLEEKRSDFEDLILAEDSEA------------------- 705 (764)
Q Consensus 647 p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------- 705 (764)
|+...++. |.+.|+..|+|++|.++++.|+.+++++.+ ++|+++.+.++.|..++..+.
T Consensus 688 p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~ 767 (857)
T PLN03077 688 PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKAS 767 (857)
T ss_pred CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhC
Confidence 87655555 556999999999999999999999998775 788777666555554433221
Q ss_pred -------------HHHHHHHhhhcchhhHHHHhhhhhhhhhhcCCccccCccc
Q 004269 706 -------------ESRILQFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDR 745 (764)
Q Consensus 706 -------------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~g~~~~~~~~~ 745 (764)
+.+..+.+..|+|+||++++|+++ ++|.||+..++-
T Consensus 768 g~~~~~~~~~~~~~~~k~~~~~~hse~la~a~~l~~~----~~~~~i~i~knl 816 (857)
T PLN03077 768 GLAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINT----VPGMPIWVTKNL 816 (857)
T ss_pred CcCCCcchhccccHHHHHHHHHhccHHHHHHHhhhcC----CCCCeEEEeCCC
Confidence 112234467799999999999999 999999998764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-80 Score=707.41 Aligned_cols=645 Identities=15% Similarity=0.149 Sum_probs=542.7
Q ss_pred hhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHH
Q 004269 48 EESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLL 127 (764)
Q Consensus 48 p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 127 (764)
+.++...++.++..+++.|++++|..+|+.|...|++|+..+|..++.+|.+.+.++.+.+++..+.+.+..++...+|.
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 44556778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhc
Q 004269 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (764)
+|.+|++.|+++.|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++++|...+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 99999999999999999999963 7899999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHh-cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCcc
Q 004269 208 NLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286 (764)
Q Consensus 208 ~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (764)
++..+.+++..+.+ +..||..+++.|+.+|+++|+++.|.++|++|.+ |+.
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~------------------------ 253 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDC------------------------ 253 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCc------------------------
Confidence 99999999999997 6999999999999999999999999999999964 443
Q ss_pred ccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 004269 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI 366 (764)
Q Consensus 287 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 366 (764)
++||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|
T Consensus 254 -------~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~ 326 (857)
T PLN03077 254 -------ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326 (857)
T ss_pred -------chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCc
Q 004269 367 ATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAP 445 (764)
Q Consensus 367 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~ 445 (764)
++|+.+|+++|++++|.++|++|... |.++||++|.+|++.|++++|+++|++|.+ |+.||..||+.++.+|++.|++
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~~~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~ 405 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCC-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchH
Confidence 99999999999999999999999987 999999999999999999999999999999 9999999999999999998865
Q ss_pred hhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCh
Q 004269 446 YEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQES 525 (764)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 525 (764)
+.+..++..+.+.|+.|+..++++|+++|+++|++++|.++|+++ ..+|.++||++|.+|++.|+.
T Consensus 406 -------------~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m-~~~d~vs~~~mi~~~~~~g~~ 471 (857)
T PLN03077 406 -------------DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI-PEKDVISWTSIIAGLRLNNRC 471 (857)
T ss_pred -------------HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCeeeHHHHHHHHHHCCCH
Confidence 455677888999999999999999999999999999999999998 468999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC---------------------------
Q 004269 526 HRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ--------------------------- 578 (764)
Q Consensus 526 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~--------------------------- 578 (764)
++|+.+|++|.. +++||..||+.+|.+|++.|+++.+.+++..+.+.|+.+|
T Consensus 472 ~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~ 550 (857)
T PLN03077 472 FEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550 (857)
T ss_pred HHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc
Confidence 999999999986 5999999999999999999999999999888888877555
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHH
Q 004269 579 ---TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMH-QNKVQPDPSTCHF 654 (764)
Q Consensus 579 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~ 654 (764)
..+||+||.+|++.|+.++|.++|++|.+.|++||..||+++|.+|.+.|++++|.++|++|. +.|+.|+..+|++
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~ 630 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 455555555555555555555566666555566666666666666666666666666666665 3455566666666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhhhccccCchHhhhHHHHHhhhhccHHHHHHH-HHHhhhcchhhHHHHhhhhhhhhh
Q 004269 655 VFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRI-LQFCEDSNENLAFTAALLQLRWCT 733 (764)
Q Consensus 655 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~ 733 (764)
++.+|++.|++++|.+++++|. ++|+...| ..++..+..+++.+..... -+.+...++..+.+..|.++ +.
T Consensus 631 lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~---~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~--ya 702 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINKMP---ITPDPAVW---GALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNL--YA 702 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHCC---CCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH--HH
Confidence 6666666666666666555542 33333333 2233333333333322222 22234455555656666655 34
Q ss_pred hcCCcccc----CcccccCccccccCc
Q 004269 734 IVGFPISW----SLDRASGLEDSQTNS 756 (764)
Q Consensus 734 ~~g~~~~~----~~~~~~~~~~~~~~~ 756 (764)
..|.+-.- ..++..|+...|++|
T Consensus 703 ~~g~~~~a~~vr~~M~~~g~~k~~g~s 729 (857)
T PLN03077 703 DAGKWDEVARVRKTMRENGLTVDPGCS 729 (857)
T ss_pred HCCChHHHHHHHHHHHHcCCCCCCCcc
Confidence 44554432 255558888888776
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-71 Score=623.16 Aligned_cols=531 Identities=15% Similarity=0.189 Sum_probs=467.6
Q ss_pred CChhhhHHHHHHHhccCCHHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh-cCCCCHhhHHHH
Q 004269 156 PILPVYNSFLGACAKLHSMVHANLCLDLMDSRM-VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKF 233 (764)
Q Consensus 156 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l 233 (764)
++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|.+.++++.+.+++..+.+ ++.||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 345567777777777777777777777776543 567777777777777777777777777777765 467777777777
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHH
Q 004269 234 VWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE 313 (764)
Q Consensus 234 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 313 (764)
+.+|++.|+++.|.++|++|.+ |+. ++||++|.+|++.|++++|+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~-------------------------------~t~n~li~~~~~~g~~~~A~ 209 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNL-------------------------------ASWGTIIGGLVDAGNYREAF 209 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCe-------------------------------eeHHHHHHHHHHCcCHHHHH
Confidence 8888899999999999999864 454 69999999999999999999
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 004269 314 QLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT 393 (764)
Q Consensus 314 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 393 (764)
++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..++++|+++|+++|++++|.++|++|...
T Consensus 210 ~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~- 288 (697)
T PLN03081 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK- 288 (697)
T ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCC
Q 004269 394 NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN 472 (764)
Q Consensus 394 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (764)
|+++||+||.+|++.|++++|+++|++|.+ |+.||..||++++.+|++.|.+ +.+..++..|.+.|
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~-------------~~a~~i~~~m~~~g 355 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL-------------EHAKQAHAGLIRTG 355 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch-------------HHHHHHHHHHHHhC
Confidence 999999999999999999999999999999 9999999999999999998865 45567788899999
Q ss_pred CCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004269 473 IQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552 (764)
Q Consensus 473 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 552 (764)
+.||..++++|+++|+++|++++|.++|+++ ..||+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+++|.
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m-~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRM-PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhC-CCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999998 568999999999999999999999999999999999999999999999
Q ss_pred HHHhhCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 004269 553 CCSIIRCFKSASALVSMMVR-DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRID 631 (764)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 631 (764)
+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++| +++|+..+|++|+.+|...|+++
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLE 511 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcH
Confidence 99999999999999999986 699999999999999999999999999999876 68999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhccc-cCchHhhhHHHHHhhhhccHH-----
Q 004269 632 VIEFIIEQMHQNKVQPD-PSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE-VSTLEEKRSDFEDLILAEDSE----- 704 (764)
Q Consensus 632 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----- 704 (764)
.|..+++++. ++.|+ ..+|..|+++|++.|+|++|.++++.|+.+|+++. +++|.++...++.|+.++..+
T Consensus 512 ~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~ 589 (697)
T PLN03081 512 LGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSRE 589 (697)
T ss_pred HHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHH
Confidence 9999999997 56675 67999999999999999999999999999998644 367766554444443332211
Q ss_pred ----------------------------HHHHHHHHhhhcchhhHHHHhhhhhhhhhhcCCccccCccc
Q 004269 705 ----------------------------AESRILQFCEDSNENLAFTAALLQLRWCTIVGFPISWSLDR 745 (764)
Q Consensus 705 ----------------------------~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~g~~~~~~~~~ 745 (764)
...+..+.+..|+|+||++++|+++ ++|.||+..++-
T Consensus 590 i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~----~~~~~i~i~knl 654 (697)
T PLN03081 590 IYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINT----SEWTPLQITQSH 654 (697)
T ss_pred HHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccC----CCCCeEEEecCC
Confidence 0112233467799999999999999 999999998764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-68 Score=597.50 Aligned_cols=517 Identities=16% Similarity=0.231 Sum_probs=473.8
Q ss_pred ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHH
Q 004269 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYT 197 (764)
Q Consensus 118 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 197 (764)
..++...|..++..|++.|++++|.++|++|.+..-++++..+++.++.+|.+.|.+++|+.+|+.|.. ||..||+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 356778888999999999999999999999986544567888888999999999999999999998875 8999999
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHh-cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccc
Q 004269 198 ELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 198 ~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
.+|++|++.|+++.|.++|+.|.+ +..||..+|+.||.+|++.|+++.|.++|++|.+.|+.|+.
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdv-------------- 507 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV-------------- 507 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH--------------
Confidence 999999999999999999999987 68999999999999999999999999999999999999887
Q ss_pred cCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
.+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+
T Consensus 508 -----------------vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 508 -----------------HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred -----------------HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999976
Q ss_pred --CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHH
Q 004269 357 --NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIR 430 (764)
Q Consensus 357 --~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~ 430 (764)
.|+.||..+|+++|.+|++.|++++|.++|+.|.+.+ +..+|+++|.+|++.|++++|+++|++|.+ |+.||..
T Consensus 571 ~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~ 650 (1060)
T PLN03218 571 ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650 (1060)
T ss_pred hcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Confidence 6789999999999999999999999999999999875 678999999999999999999999999999 9999999
Q ss_pred HHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc---CCCC
Q 004269 431 TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS---KTPL 507 (764)
Q Consensus 431 t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~ 507 (764)
||+.++.+|++.|+. +.+..++..|.+.|+.|+..+|++|+.+|+++|++++|.++|+++ +..|
T Consensus 651 TynsLI~a~~k~G~~-------------eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P 717 (1060)
T PLN03218 651 FFSALVDVAGHAGDL-------------DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717 (1060)
T ss_pred HHHHHHHHHHhCCCH-------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 999999999988765 445567778999999999999999999999999999999999876 4689
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587 (764)
Q Consensus 508 ~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 587 (764)
|..+||+||.+|++.|++++|+++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|++++.
T Consensus 718 dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIg 797 (1060)
T PLN03218 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG 797 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHh----c-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004269 588 ILLD----Y-------------------GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 588 ~~~~----~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 644 (764)
.|.+ + +..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...+
T Consensus 798 lc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 798 LCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred HHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 6432 2 2246899999999999999999999999988888999999999999998888
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcccc
Q 004269 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684 (764)
Q Consensus 645 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 684 (764)
..|+..+|++|+.++.+. .++|..++++|...|+.|..
T Consensus 878 ~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 878 DSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred CCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 999999999999998432 36899999999999998875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-67 Score=584.70 Aligned_cols=516 Identities=16% Similarity=0.215 Sum_probs=479.5
Q ss_pred CCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCc-cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhH
Q 004269 84 SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI-GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162 (764)
Q Consensus 84 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 162 (764)
.++...|..++..|.+.|+++.|.++|++|.+.|+ +++..+++.++..|++.|.+++|..+|+.|.. ||..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHH
Confidence 56677899999999999999999999999999985 67888889999999999999999999999863 8999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh-cCCCCHhhHHHHHHHhhccC
Q 004269 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-HYSLSIFSLRKFVWSFTRLR 241 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g 241 (764)
.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+ +..||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999986 68999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 242 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
++++|.++|+.|.+.|+.|+. .+||.||.+|++.|++++|.++|++|..
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~-------------------------------vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDR-------------------------------VVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCH-------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999997 7999999999999999999999999986
Q ss_pred --CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCc
Q 004269 322 --LGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPK 396 (764)
Q Consensus 322 --~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~ 396 (764)
.|+.||..+|+++|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|...+ |..
T Consensus 571 ~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~ 650 (1060)
T PLN03218 571 ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650 (1060)
T ss_pred hcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Confidence 678999999999999999999999999999999999999999999999999999999999999999999876 888
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCc
Q 004269 397 PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475 (764)
Q Consensus 397 ~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (764)
+|+++|.+|++.|++++|.++|++|.+ |+.||..+|+++|.+|++.|.++++ ..++..|...|+.|
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA-------------~~lf~eM~~~g~~P 717 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA-------------LELYEDIKSIKLRP 717 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH-------------HHHHHHHHHcCCCC
Confidence 999999999999999999999999999 9999999999999999999876444 45566788889999
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhc---CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004269 476 SHISMKNLLKALGAEGMIRELIQYFCDS---KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552 (764)
Q Consensus 476 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 552 (764)
|..+|++|+.+|++.|++++|.++|++| +..||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|++++.
T Consensus 718 dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIg 797 (1060)
T PLN03218 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG 797 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999876 5689999999999999999999999999999999999999999999997
Q ss_pred HHHh----h-------------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004269 553 CCSI----I-------------------RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609 (764)
Q Consensus 553 ~~~~----~-------------------g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 609 (764)
.|.+ . +..+.|..+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.|...+
T Consensus 798 lc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 798 LCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred HHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 6542 1 1236799999999999999999999999999999999999999999998888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004269 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 610 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
..|+..+|++||+++.+. .++|..++++|...|+.|+..
T Consensus 878 ~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 878 DSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 999999999999998432 468999999999999999986
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-63 Score=556.88 Aligned_cols=468 Identities=15% Similarity=0.138 Sum_probs=415.4
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccC-CCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAH-HSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 131 (764)
.+|..+|..+.+.|++++|+++|+.|...+ ..|+..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.|+.+
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 478899999999999999999999998764 6799999999999999999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhH
Q 004269 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
|++.|++++|.++|++|.+ ||..+||+++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..|+.+.
T Consensus 168 y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 9999999999999999963 79999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccch
Q 004269 212 VHEIWEDYIK-HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290 (764)
Q Consensus 212 a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (764)
+.+++..+.+ +..+|..+|++|+.+|+++|++++|.++|+.|.+ ++.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~---------------------------- 290 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTT---------------------------- 290 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CCh----------------------------
Confidence 9999999987 6899999999999999999999999999999964 333
Q ss_pred hhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004269 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370 (764)
Q Consensus 291 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 370 (764)
++||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..++++|+
T Consensus 291 ---vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 291 ---VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred ---hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCchhhc
Q 004269 371 VECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEG 449 (764)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~ 449 (764)
++|+++|++++|.++|++|... |..+||+||.+|++.|+.++|+++|++|.+ |+.||..||+.+|.+|++.|..+++
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a- 445 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG- 445 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH-
Confidence 9999999999999999999987 999999999999999999999999999999 9999999999999999888765443
Q ss_pred hhhhhhhhHHHHHHHHHHHHH-CCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHH
Q 004269 450 NMFSQVDSAKRINAIEMDMAR-NNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRA 528 (764)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 528 (764)
..++..|.+ .|+.|+..+|+.++++|++.|++++|.++|+++...|+..+|++++.+|..+|+.+.|
T Consensus 446 ------------~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 446 ------------WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred ------------HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 344445543 4777777777777777777777777777777776667777777777777777777777
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCC
Q 004269 529 MEIFKQMKTCGIPP-NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFY 576 (764)
Q Consensus 529 ~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 576 (764)
..+++++.+. .| +..+|..+++.|++.|++++|.++++.|.+.|++
T Consensus 514 ~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 514 RLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 7777766543 34 3456777777777777777777777777766654
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=319.85 Aligned_cols=630 Identities=11% Similarity=-0.017 Sum_probs=488.0
Q ss_pred hHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChh
Q 004269 9 RFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGAD 88 (764)
Q Consensus 9 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 88 (764)
........+...|++++|. ..++ ..+...|+... .+......+...|++++|...|+.+.... +.+..
T Consensus 263 ~~~~~~~~~~~~~~~~~A~-~~~~---------~~l~~~~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 330 (899)
T TIGR02917 263 AHYLKALVDFQKKNYEDAR-ETLQ---------DALKSAPEYLP-ALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQ 330 (899)
T ss_pred HHHHHHHHHHHhcCHHHHH-HHHH---------HHHHhCCCchh-HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 3444555667889999999 4443 33444455322 23334556778999999999999988765 44566
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHH
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 168 (764)
.+..+...+...|+++.|.+.++.+...+ +.+...+..+...|.+.|++++|.++|+++.+.. +.+...+..+...+
T Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 407 (899)
T TIGR02917 331 ARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISK 407 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 67778888889999999999999998765 4567788889999999999999999999886532 33556778888889
Q ss_pred hccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHH
Q 004269 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 248 (764)
...|++++|.+.|+.+.+.... .......++..+...|++++|.++++.+.+..+.+..++..+..+|...|++++|..
T Consensus 408 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 408 LSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred HhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999998876533 334556677788899999999999999998888888999999999999999999999
Q ss_pred HHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc
Q 004269 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328 (764)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 328 (764)
.|+++.+ ..|+. ...+..+...+...|++++|.+.|+++...+ +.+.
T Consensus 487 ~~~~a~~--~~~~~------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 533 (899)
T TIGR02917 487 AFEKALS--IEPDF------------------------------FPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNL 533 (899)
T ss_pred HHHHHHh--hCCCc------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcH
Confidence 9999887 44543 1477788888999999999999999998764 3356
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHH
Q 004269 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACD 406 (764)
Q Consensus 329 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~ 406 (764)
.++..+...+...|+.++|..+++.+.+.+.. +...+..++..|.+.|++++|..+++.+.... +...|..+..+|.
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 67888888888999999999999998877543 56677788899999999999999999987653 5677888999999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 004269 407 TMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486 (764)
Q Consensus 407 ~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 486 (764)
+.|++++|...|+++.+..+.+...+..+...+...|++.++...+ ..+.+. .+.+...+..+...
T Consensus 613 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-------------~~~~~~-~~~~~~~~~~l~~~ 678 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSL-------------KRALEL-KPDNTEAQIGLAQL 678 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH-------------HHHHhc-CCCCHHHHHHHHHH
Confidence 9999999999999988722334556667777777777665544333 223322 23456778888999
Q ss_pred HHhcCcHHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHH
Q 004269 487 LGAEGMIRELIQYFCDSK--TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564 (764)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 564 (764)
+...|++++|..+++.+. .+.+...+..+...+...|++++|+..|+++...+ |+..++..+..++.+.|++++|.
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHH
Confidence 999999999999987762 23456678888888899999999999999988864 55677778888899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004269 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 565 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 644 (764)
..++.+.+.. +.+...+..+...|.+.|++++|.++|+++.+.. ++++.+++.+...+...|+ .+|+..++++.+.
T Consensus 757 ~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~- 832 (899)
T TIGR02917 757 KTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL- 832 (899)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh-
Confidence 9998888764 4567788888899999999999999999998654 5678888999999999999 7899999998863
Q ss_pred CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhccccCchHhhhHHHHHhhhhccHHHHHHHHHHh
Q 004269 645 VQPD-PSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFC 713 (764)
Q Consensus 645 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (764)
.|+ ..++..+..++...|++++|.++++++...+.. ...........+...++.+.+...++.+
T Consensus 833 -~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 833 -APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE----AAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 443 445556667888999999999999987664432 2222344556667777777777666543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-31 Score=311.44 Aligned_cols=653 Identities=11% Similarity=0.001 Sum_probs=516.4
Q ss_pred cccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccC
Q 004269 3 RPLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAH 82 (764)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~ 82 (764)
.|.....+..++..+...|++++|. ..++.+ ....|......+ .....+...|++++|+..|+.+.+.+
T Consensus 223 ~p~~~~~~~~~~~~~~~~g~~~~A~-~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~l~~~ 291 (899)
T TIGR02917 223 RPNNPAVLLALATILIEAGEFEEAE-KHADAL---------LKKAPNSPLAHY-LKALVDFQKKNYEDARETLQDALKSA 291 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHH---------HHhCCCCchHHH-HHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4666677888999999999999999 554443 333444333222 23344667899999999999998765
Q ss_pred CCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhH
Q 004269 83 HSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162 (764)
Q Consensus 83 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 162 (764)
. .....+..+...+...|+++.|...++.+.+.. +.+...+..+...+.+.|++++|...++.+.+.. +.+...++
T Consensus 292 ~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~ 367 (899)
T TIGR02917 292 P-EYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD--PDDPAALS 367 (899)
T ss_pred C-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHH
Confidence 2 223344455667778899999999999998874 4567788888999999999999999999987543 44667899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCC
Q 004269 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
.+...+.+.|++++|.++|+.+.+..+ .+...+..+...+...|++++|.+.++.+.+..+.+......++..+.+.|+
T Consensus 368 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 368 LLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ 446 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCC
Confidence 999999999999999999999987643 2566777888889999999999999999988766677788888999999999
Q ss_pred HHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 243 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
+++|..+++.+.+. .|+. ..+|+.+...+...|++++|.+.|+++.+.
T Consensus 447 ~~~A~~~~~~~~~~--~~~~------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 494 (899)
T TIGR02917 447 FDKALAAAKKLEKK--QPDN------------------------------ASLHNLLGAIYLGKGDLAKAREAFEKALSI 494 (899)
T ss_pred HHHHHHHHHHHHHh--CCCC------------------------------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 99999999999873 3332 158999999999999999999999999875
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHH
Q 004269 323 GLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSA 400 (764)
Q Consensus 323 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~ 400 (764)
. +.+...+..+...+...|++++|..+++.+.+.+.. +..++..+...+.+.|+.++|...|+++.... +...+..
T Consensus 495 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 572 (899)
T TIGR02917 495 E-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALA 572 (899)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHH
Confidence 3 234556777888899999999999999999987654 67788899999999999999999999986654 5667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHH
Q 004269 401 FLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480 (764)
Q Consensus 401 li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (764)
+...|.+.|++++|..+++.+....+.+..++..+...+...|++.++...+. .+.+.. +.+...+
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-------------~~~~~~-~~~~~~~ 638 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK-------------KLLALQ-PDSALAL 638 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-------------HHHHhC-CCChHHH
Confidence 99999999999999999999988555677888888889988887765554432 333322 3356678
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhc-C-CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhC
Q 004269 481 KNLLKALGAEGMIRELIQYFCDS-K-TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558 (764)
Q Consensus 481 ~~l~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 558 (764)
..+...|.+.|++++|...|++. . .+.+..++..++..+...|++++|..+++.+.+.+ +++...+..+...+...|
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCC
Confidence 88999999999999999999875 2 33457799999999999999999999999999875 457778888889999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004269 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638 (764)
Q Consensus 559 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 638 (764)
++++|...|+.+.+.+ |+..++..+..++.+.|+.++|.+.++++.+.. +.+...+..+...|...|+.++|.++|+
T Consensus 718 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 718 DYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred CHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 9999999999999865 555778889999999999999999999998753 5678899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhccccCchHhhhHHHHHhhhhccHHHHHHHHHH-hhhcc
Q 004269 639 QMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQF-CEDSN 717 (764)
Q Consensus 639 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 717 (764)
++.+.. +++...+..+...+...|+ ++|++++++..... +...... ......+...++.+.+...++. +...+
T Consensus 795 ~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 795 TVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA--PNIPAIL--DTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC--CCCcHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999753 4567788888889999999 88999999775532 2221111 1122223334555555544433 44444
Q ss_pred hhhHHHHhhhhh
Q 004269 718 ENLAFTAALLQL 729 (764)
Q Consensus 718 ~~~a~~~~l~~~ 729 (764)
.+..+...+...
T Consensus 869 ~~~~~~~~l~~~ 880 (899)
T TIGR02917 869 EAAAIRYHLALA 880 (899)
T ss_pred CChHHHHHHHHH
Confidence 444444444433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-22 Score=239.04 Aligned_cols=619 Identities=11% Similarity=0.008 Sum_probs=430.5
Q ss_pred CcccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhh---------------HHHHHHHHHhhC
Q 004269 2 YRPLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKA---------------TQMQIVDALCRG 66 (764)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~---------------~~~~i~~~~~~~ 66 (764)
..|.+...+...+..+...|+.++|. ..++ ......|+..... .......+...|
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~A~-~~l~---------~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g 126 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDGAQ-KLLD---------RLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTG 126 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHH-HHHH---------HHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 35777778888999999999999999 4443 3455555533321 233345678899
Q ss_pred CcchHHHHHHhccccCCCCChhc-HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHH
Q 004269 67 ERSRASHLLLNLGHAHHSLGADD-FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLI 145 (764)
Q Consensus 67 ~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 145 (764)
++++|++.|+.+...+ +++... ...........|+.++|++.++++.+.. +.+...+..+...+...|+.++|+..|
T Consensus 127 ~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l 204 (1157)
T PRK11447 127 RTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVL 204 (1157)
T ss_pred CHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999999998765 334322 1112222334589999999999999985 557778889999999999999999999
Q ss_pred HHHhhhcCCC---------------C---ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhc
Q 004269 146 YFLGERYGIY---------------P---ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 146 ~~m~~~~~~~---------------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (764)
+++.+..... + ....+...+..+-.......|...+..+......|+... ......+...|
T Consensus 205 ~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g 283 (1157)
T PRK11447 205 EQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSG 283 (1157)
T ss_pred HHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCC
Confidence 9985421100 0 001122222222333334556666666554433343322 12344567899
Q ss_pred ChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccc
Q 004269 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALP 287 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (764)
++++|...|++.++..+.+..++..+..+|.+.|++++|...|++..+ ..|+..........+
T Consensus 284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~--~~p~~~~~~~~~~ll--------------- 346 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALA--LDPHSSNRDKWESLL--------------- 346 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCccchhHHHHHH---------------
Confidence 999999999999998888999999999999999999999999999987 334321000000000
Q ss_pred cchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 004269 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367 (764)
Q Consensus 288 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 367 (764)
.....+........+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.|+++.+.... +...+.
T Consensus 347 -~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~ 423 (1157)
T PRK11447 347 -KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVR 423 (1157)
T ss_pred -HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 00000011223456788999999999999999863 224556777888899999999999999999987544 455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC-----------CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-HHHHHHH
Q 004269 368 TLSVECSKALELDLAEALLDQISRCT-----------NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPD-IRTYELL 435 (764)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~-~~t~~~l 435 (764)
.+...|. .++.++|..+++.+.... ....+..+...+...|++++|+..|++..+ ..|+ ...+..+
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~-~~P~~~~~~~~L 501 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA-LDPGSVWLTYRL 501 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHH
Confidence 6777764 467899999887764321 123455667788899999999999999987 3354 4445555
Q ss_pred HHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCC---CCh---
Q 004269 436 FSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP---LGT--- 509 (764)
Q Consensus 436 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~--- 509 (764)
...+...|++.++.. .+..+.+.. +.+...+..+...+...++.++|...++..... ++.
T Consensus 502 A~~~~~~G~~~~A~~-------------~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l 567 (1157)
T PRK11447 502 AQDLRQAGQRSQADA-------------LMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQEL 567 (1157)
T ss_pred HHHHHHcCCHHHHHH-------------HHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHH
Confidence 566666666544443 333333322 223334444555667889999999999876321 111
Q ss_pred ------hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHH
Q 004269 510 ------PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583 (764)
Q Consensus 510 ------~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~ 583 (764)
..+..+...+...|+.++|..+++. .+++...+..+...+.+.|++++|...|+...+.. +.+...+.
T Consensus 568 ~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~ 641 (1157)
T PRK11447 568 AQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARL 641 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 1123445678889999999999882 24455667778888999999999999999999864 33577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHH
Q 004269 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV--QP---DPSTCHFVFSG 658 (764)
Q Consensus 584 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p---~~~~~~~ll~~ 658 (764)
.+...|...|+.++|++.++...+.. +.+..++..+...+...|++++|.++++++....- .| +...+..+...
T Consensus 642 ~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~ 720 (1157)
T PRK11447 642 GLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARF 720 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHH
Confidence 99999999999999999999887532 23566777788889999999999999999986421 12 12345555678
Q ss_pred HHhcCChHHHHHHHHHHH
Q 004269 659 YVNCGFHNSAMEALQVLS 676 (764)
Q Consensus 659 ~~~~g~~~~a~~~~~~~~ 676 (764)
+...|++++|++.++...
T Consensus 721 ~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 721 EAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 899999999999999864
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-21 Score=224.48 Aligned_cols=595 Identities=12% Similarity=0.028 Sum_probs=397.1
Q ss_pred HHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhc
Q 004269 10 FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADD 89 (764)
Q Consensus 10 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 89 (764)
|...+......++.+.|. ..+.+...+.|+. ...+..++..+...|+.++|.+.++++.+.. |.+...
T Consensus 31 Ll~q~~~~~~~~~~d~a~----------~~l~kl~~~~p~~-p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~ 98 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVR----------QSLYRLELIDPNN-PDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAY 98 (1157)
T ss_pred HHHHHHHHHhhCChHHHH----------HHHHHHHccCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHH
Confidence 555666667777777777 4444456666764 4445566777888999999999999988776 222222
Q ss_pred H----------------HHHHHHhhCCCChhHHHHHHHHHHHcCccccHHH-HHHHHHHHHccCCHHHHHHHHHHHhhhc
Q 004269 90 F----------------FHILNYCARSPDPLFVMETWRMMEEKEIGLNNKC-YLLMMQALCKGGYLEEASNLIYFLGERY 152 (764)
Q Consensus 90 ~----------------~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~ 152 (764)
. ..+.+.+...|++++|.+.|+.+.+.+ +|+... ...+.......|+.++|++.|+++.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~ 177 (1157)
T PRK11447 99 RSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY 177 (1157)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC
Confidence 1 223345677899999999999988764 344321 1111222234688999999999987653
Q ss_pred CCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCC--hhhH-----------------HHHHHHHHhhcChhHHH
Q 004269 153 GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN--EVTY-----------------TELLKLAVWQKNLSAVH 213 (764)
Q Consensus 153 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~-----------------~~ll~~~~~~~~~~~a~ 213 (764)
+.+...+..+...+...|+.++|+..|+++........ ...| ...+..+-.....+.+.
T Consensus 178 --P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 178 --PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred --CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence 33555777888888889999999999998865321100 0011 11111111111223344
Q ss_pred HHHHHHHhc-CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhh
Q 004269 214 EIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 214 ~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
..+....+. ..|.. ........+...|++++|...|++..+ ..|+.
T Consensus 256 ~~L~~~~~~~~dp~~-~~~~~G~~~~~~g~~~~A~~~l~~aL~--~~P~~------------------------------ 302 (1157)
T PRK11447 256 SQLAEQQKQLADPAF-RARAQGLAAVDSGQGGKAIPELQQAVR--ANPKD------------------------------ 302 (1157)
T ss_pred HHHHHHHHhccCcch-HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC------------------------------
Confidence 444333322 11221 122345567788999999999999988 45554
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc---cHH------------HHHHHHHhcCChhHHHHHHHHHHHC
Q 004269 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH---TYD------------GFIRAIVSDRGLRNGMEVLKIMQQN 357 (764)
Q Consensus 293 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~ 357 (764)
...+..+...+.+.|++++|+..|++..+.. |+.. .+. .....+.+.|++++|...|+++.+.
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2578889999999999999999999988753 3321 111 1233566889999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCC-C-----
Q 004269 358 NLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRP-D----- 428 (764)
Q Consensus 358 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p-~----- 428 (764)
... +...+..+...|...|++++|++.|++..... +...+..+...|. .++.++|+.+++.+.. .... .
T Consensus 381 ~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~ 458 (1157)
T PRK11447 381 DNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERS 458 (1157)
T ss_pred CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 644 56667788899999999999999999987653 4445666666664 4678999888876543 1100 0
Q ss_pred --HHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc-CC
Q 004269 429 --IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-KT 505 (764)
Q Consensus 429 --~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~ 505 (764)
...+..+-..+...|++ +.+...+....+... .+...+..+...|.+.|++++|...|++. ..
T Consensus 459 l~~~~~~~~a~~~~~~g~~-------------~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 459 LQNDRLAQQAEALENQGKW-------------AQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred hhhhHHHHHHHHHHHCCCH-------------HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 00111122222233333 333334444443322 24556777888999999999999999875 22
Q ss_pred CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhhCChhHHHHHHHHHHHCCC
Q 004269 506 PL-GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA---------TYNIMIDCCSIIRCFKSASALVSMMVRDGF 575 (764)
Q Consensus 506 ~~-~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 575 (764)
.| +...+..+...+...++.++|+..++.+......++.. .+......+...|+.++|..+++. .
T Consensus 525 ~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~ 599 (1157)
T PRK11447 525 KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----Q 599 (1157)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----C
Confidence 33 34445455556677899999999998875433222221 123445667888999999999872 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHH
Q 004269 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP-STCHF 654 (764)
Q Consensus 576 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ 654 (764)
+.+...+..+...+.+.|+.++|++.|++..+.. +.+...+..+...+...|+.++|++.++...+ ..|+. .....
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~ 676 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRR 676 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHH
Confidence 4566677889999999999999999999998753 44678999999999999999999999998875 45554 44555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHh
Q 004269 655 VFSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 655 ll~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
+..++...|++++|.++++.+...
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhh
Confidence 666889999999999999987653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-18 Score=193.49 Aligned_cols=601 Identities=10% Similarity=-0.003 Sum_probs=391.8
Q ss_pred HhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHH
Q 004269 17 FCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNY 96 (764)
Q Consensus 17 ~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 96 (764)
+...|++++|+ ..|.+.+...|+. ......+...|...|+.++|+..+++..+.. |+...|..++..
T Consensus 54 ~~~~Gd~~~A~----------~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~ 120 (987)
T PRK09782 54 AQKNNDEATAI----------REFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAA 120 (987)
T ss_pred HHhCCCHHHHH----------HHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHH
Confidence 44459999999 6666678888887 6666788899999999999999999998876 444444444433
Q ss_pred hhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH--------HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH-HHH
Q 004269 97 CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA--------LCKGGYLEEASNLIYFLGERYGIYPILPVYNSF-LGA 167 (764)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l-i~~ 167 (764)
+ ++.+.|.++++++.+.. +-+..++..+... |.+. ++|.+.++ .. .....|+..+.... ...
T Consensus 121 i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr-~~~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 121 I---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DA-TFAASPEGKTLRTDLLQR 191 (987)
T ss_pred h---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-Hh-hhCCCCCcHHHHHHHHHH
Confidence 3 78889999999999985 4456666666655 6665 44444444 22 22233444444544 899
Q ss_pred HhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh-hcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHH
Q 004269 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW-QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
|.+.|++++|++++..+.+.++. +..-...|-.+|.. .++ +.+..++.. ....++..+..+...|.+.|+.+.|
T Consensus 192 Y~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~---~lk~d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 192 AIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ---GIFTDPQSRITYATALAYRGEKARL 266 (987)
T ss_pred HHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch---hcccCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999998644 34445566667776 366 777777543 3447889999999999999999999
Q ss_pred HHHHHHHHHhhcc-CcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 004269 247 YETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325 (764)
Q Consensus 247 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 325 (764)
.+++.++...-.. |.........+........-..+... +-.+-.....-.++..+.+.++++.+.++.. +.
T Consensus 267 ~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 339 (987)
T PRK09782 267 QHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTV-QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TL 339 (987)
T ss_pred HHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhh-hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CC
Confidence 9999998763222 22111111111111111000000000 0000001223344677888888886665522 34
Q ss_pred CCcccHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCC----ccH
Q 004269 326 PSSHTYDGFIRAIV--SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC-TNP----KPF 398 (764)
Q Consensus 326 p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~----~~~ 398 (764)
|.... ..++... ..+...++...+..|.+.... +....--+.....+.|+.++|.++|...... ++. ..-
T Consensus 340 ~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 416 (987)
T PRK09782 340 PANEM--LEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLM 416 (987)
T ss_pred CcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHH
Confidence 44432 2333333 336677777777777776333 5555555566677889999999999888763 222 233
Q ss_pred HHHHHHHHhcCC---HHHHHHH----------------------HHHHhc--cCCCC---HHHHHHHHHHhcCCCCchhh
Q 004269 399 SAFLAACDTMDK---PERAIKI----------------------FAKMRQ--KLRPD---IRTYELLFSLFGNVNAPYEE 448 (764)
Q Consensus 399 ~~li~~~~~~~~---~~~a~~l----------------------~~~m~~--~~~p~---~~t~~~ll~~~~~~~~~~~~ 448 (764)
+-++..|.+.+. ..++..+ +..... +..|+ ...+..+-.++.. +.+.++
T Consensus 417 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eA 495 (987)
T PRK09782 417 ARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVA 495 (987)
T ss_pred HHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHH
Confidence 356677777665 3333333 222222 12122 2222222222221 222221
Q ss_pred chhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCC-CCChhhHHHHHHHHHHcCChHH
Q 004269 449 GNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKT-PLGTPTYNTVLHSLVEAQESHR 527 (764)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~ 527 (764)
. ..+..... ..|+......+...+...|++++|...|++... +|+...+..+...+.+.|+.++
T Consensus 496 i------------~a~~~Al~---~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~e 560 (987)
T PRK09782 496 L------------YAWLQAEQ---RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAA 560 (987)
T ss_pred H------------HHHHHHHH---hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHH
Confidence 1 11111221 124544433455556789999999999987533 3445566677788889999999
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004269 528 AMEIFKQMKTCGIPPNA-ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVS 606 (764)
Q Consensus 528 A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 606 (764)
|...|++..+.+ |+. ..+..+...+...|++++|...+++..+. .|+...|..+..++.+.|+.++|+..+++..
T Consensus 561 A~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL 636 (987)
T PRK09782 561 RDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAAL 636 (987)
T ss_pred HHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998864 433 33333334445569999999999999885 4678889999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 607 LEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD-PSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 607 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
... +.+...+..+...+...|+.++|+..+++..+ ..|+ ...+..+-.++...|++++|+..+++...
T Consensus 637 ~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 637 ELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 653 34667888888899999999999999999986 4565 45666677799999999999999987653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-17 Score=186.58 Aligned_cols=553 Identities=9% Similarity=-0.037 Sum_probs=367.9
Q ss_pred HHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHH
Q 004269 61 DALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEE 140 (764)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 140 (764)
-+...|++++|+..|++..+.. |-+...+..+.++|...|+.++|+..+++..+.+ +-|...+..+ ..+ +++++
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~k 126 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVK 126 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChh
Confidence 3445699999999999999887 4457788999999999999999999999999884 3344444443 333 99999
Q ss_pred HHHHHHHHhhhcCCCCChhhhHHHHHH--------HhccCCHHHHHHHHHHHhhcCCCCChhhHHHH-HHHHHhhcChhH
Q 004269 141 ASNLIYFLGERYGIYPILPVYNSFLGA--------CAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL-LKLAVWQKNLSA 211 (764)
Q Consensus 141 A~~~~~~m~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~ 211 (764)
|..+++++...++ -+...+..+... |.+. +.|.+.++ .+...+.|+..+.... .+.|...++++.
T Consensus 127 A~~~ye~l~~~~P--~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 127 SVTTVEELLAQQK--ACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred HHHHHHHHHHhCC--CChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 9999999987643 233444444444 5555 56666665 4444445555555555 889999999999
Q ss_pred HHHHHHHHHhcCCCCHhhHHHHHHHhhc-cCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccch
Q 004269 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTR-LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (764)
|.+++..+.+..+.+......|..+|.. .++ +.+..+++.. ++.+.
T Consensus 201 Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~---------------------------- 247 (987)
T PRK09782 201 ADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDP---------------------------- 247 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCH----------------------------
Confidence 9999999999888888888888888888 466 7777775531 22222
Q ss_pred hhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCcccHHHH------------------------------HHHHH
Q 004269 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ-PSSHTYDGF------------------------------IRAIV 339 (764)
Q Consensus 291 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l------------------------------l~~~~ 339 (764)
..+..+...|.+.|+.++|..+++++...-.. |+..++--+ +..+.
T Consensus 248 ---~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (987)
T PRK09782 248 ---QSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLL 324 (987)
T ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHH
Confidence 48889999999999999999999998654222 333333222 22222
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHhhC-C-CCccHHHHHHHHHhcCCHHHHH
Q 004269 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS--KALELDLAEALLDQISRC-T-NPKPFSAFLAACDTMDKPERAI 415 (764)
Q Consensus 340 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~ 415 (764)
+.++++.+.++ + ...|.... ..+..+. ..+...++...+..+... + +...-..+..-..+.|+.++|.
T Consensus 325 ~~~~~~~~~~~----~--~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~ 396 (987)
T PRK09782 325 KEGQYDAAQKL----L--ATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAA 396 (987)
T ss_pred hccHHHHHHHH----h--cCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHH
Confidence 33333333222 1 12222222 1222211 224444555555555444 2 3333334444567889999999
Q ss_pred HHHHHHhc---cCCCCHHHHHHHHHHhcCCCCchhhchhhhh---hhhHHH---H------HHHHHHH-HHCCC-Cc--c
Q 004269 416 KIFAKMRQ---KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQ---VDSAKR---I------NAIEMDM-ARNNI-QH--S 476 (764)
Q Consensus 416 ~l~~~m~~---~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~---~~~~~~---~------~~~~~~~-~~~~~-~~--~ 476 (764)
++|+.... .-.++.....-++..+...+.+....+...- ++.... . ....... ...+. ++ +
T Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~ 476 (987)
T PRK09782 397 DLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYD 476 (987)
T ss_pred HHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCC
Confidence 99998876 2333444444666666666553222222111 110000 0 0011111 11122 23 5
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHh-cCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004269 477 HISMKNLLKALGAEGMIRELIQYFCD-SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555 (764)
Q Consensus 477 ~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 555 (764)
...+..+...+.. ++.++|...+.+ ....|+......+...+...|++++|...|+++... .|+...+..+..++.
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all 553 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQ 553 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHH
Confidence 6677777777776 788889986654 334566444334445556899999999999998664 455556666777888
Q ss_pred hhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004269 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635 (764)
Q Consensus 556 ~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 635 (764)
..|+.++|...++...+.. +.+...+..+...+.+.|++++|...+++..+. .|+...|..+...+.+.|+.++|+.
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998864 223333334444555669999999999999854 5788899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHH
Q 004269 636 IIEQMHQNKVQPDPSTCH-FVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 636 ~~~~m~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
.+++..+ ..|+...+. .+-.++...|++++|++.++....
T Consensus 631 ~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 631 DLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999996 567665544 444589999999999999986644
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-17 Score=165.01 Aligned_cols=377 Identities=14% Similarity=0.110 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHH-HH
Q 004269 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE-LL 200 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll 200 (764)
..+|..+.+.+-..|++++|+.+++.+.+.. +..+..|..+..++...|+.+.|...|.+..+. .|+.....+ +-
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 3455555555555556666665555554332 112335555555555555555555555555542 343332222 12
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCC
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
......|.+++|...|-+.++..+.-..+|+.|...+-..|+...|+..|++..+ ++|+-
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f------------------ 251 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNF------------------ 251 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcc------------------
Confidence 2222345555555555544444444444455555555555555555555555544 33332
Q ss_pred ccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 004269 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 359 (764)
...|-.|-..|...+.+++|+..|.+.... .|+ ...+..+...|...|.++.|...|++.++...
T Consensus 252 ------------~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P 317 (966)
T KOG4626|consen 252 ------------LDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP 317 (966)
T ss_pred ------------hHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC
Confidence 124444555555555555555555444432 233 22333333344444555555555555444332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHh
Q 004269 360 KPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLF 439 (764)
Q Consensus 360 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~ 439 (764)
. -...|+.|..++-..|++.+|...|.+... .-|+.
T Consensus 318 ~---------------------------------F~~Ay~NlanALkd~G~V~ea~~cYnkaL~-l~p~h---------- 353 (966)
T KOG4626|consen 318 N---------------------------------FPDAYNNLANALKDKGSVTEAVDCYNKALR-LCPNH---------- 353 (966)
T ss_pred C---------------------------------chHHHhHHHHHHHhccchHHHHHHHHHHHH-hCCcc----------
Confidence 2 233455555555555555555555554443 11110
Q ss_pred cCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc-CCCCC-hhhHHHHHH
Q 004269 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-KTPLG-TPTYNTVLH 517 (764)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~li~ 517 (764)
.-..+.|...|...|.+++|..+|... ...|. ...+|.|..
T Consensus 354 -------------------------------------adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~ 396 (966)
T KOG4626|consen 354 -------------------------------------ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLAS 396 (966)
T ss_pred -------------------------------------HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHH
Confidence 111223344444455555555554432 12232 235677777
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 004269 518 SLVEAQESHRAMEIFKQMKTCGIPPNA-ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ-TMTYTALIKILLDYGDF 595 (764)
Q Consensus 518 ~~~~~~~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~ 595 (764)
.|-++|+.++|+..|++..+ ++|+- ..|+.+-..|-..|+++.|.+.+.+.+.. .|. ...++.|...|-.+|++
T Consensus 397 i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 397 IYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNI 472 (966)
T ss_pred HHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCc
Confidence 78888888888888888776 56664 46777777788888888888888887774 344 34567788888888888
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 004269 596 DEALNLLDLVSLEGIPHDV-LLYNTILKK 623 (764)
Q Consensus 596 ~~A~~~~~~m~~~~~~p~~-~~~~~li~~ 623 (764)
.+|+.-++..+ .++||. ..|..++..
T Consensus 473 ~~AI~sY~~aL--klkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 473 PEAIQSYRTAL--KLKPDFPDAYCNLLHC 499 (966)
T ss_pred HHHHHHHHHHH--ccCCCCchhhhHHHHH
Confidence 88888888877 456653 345444444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-16 Score=164.63 Aligned_cols=559 Identities=8% Similarity=0.003 Sum_probs=253.2
Q ss_pred hCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHcc---CCHHHH
Q 004269 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKG---GYLEEA 141 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A 141 (764)
.+++..|+.+|......+....+.....+..++.+.++.+.|+..|++..+.+ +-++.++-.|...-... ..+..+
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~ 255 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKG 255 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHH
Confidence 45666666666664443322222222223334445566666666666666653 12222222222211122 233444
Q ss_pred HHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCC--CChhhHHHHHHHHHhhcChhHHHHHHHHH
Q 004269 142 SNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG--KNEVTYTELLKLAVWQKNLSAVHEIWEDY 219 (764)
Q Consensus 142 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 219 (764)
..++...-..++ -|+...+.|.+-|.-.|+++.+..+...+...... .-...|-.+.++|-..|++++|...|-+.
T Consensus 256 ~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 256 VQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 444444433222 23345566666666666666666666555543211 12234555666666666666666666655
Q ss_pred HhcCCCC-HhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHH
Q 004269 220 IKHYSLS-IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298 (764)
Q Consensus 220 ~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (764)
.+..+.+ ...+--|..+|.+.|+.+.+...|+.+.+ ..|+.+ .+.-.
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k--~~p~~~------------------------------etm~i 381 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK--QLPNNY------------------------------ETMKI 381 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH--hCcchH------------------------------HHHHH
Confidence 5543333 34444555666666666666666666665 334431 23333
Q ss_pred HHHHHHccC----CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH----HHCCCCCCHHHHHHHH
Q 004269 299 VIHACGRTQ----NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM----QQNNLKPQDSTIATLS 370 (764)
Q Consensus 299 li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li 370 (764)
|...|+..+ ..+.|..++.+..+.- ..|...|-.+-..+. .++....+.+|..+ ...+-.+.....|.+.
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNva 459 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVA 459 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence 333333332 3344555555444432 223334433333332 22333334433322 2233334445555555
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCC------CCc------cHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 004269 371 VECSKALELDLAEALLDQISRCT------NPK------PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSL 438 (764)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~~~~~~------~~~------~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~ 438 (764)
..+...|+++.|...|+.....- +.. +--.+...+-..++.+.|.+.|..+.. --|.-+.-..-+.+
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk-ehp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK-EHPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HCchhHHHHHHhhH
Confidence 55555555555555555544330 110 011122233334455555555555544 11222211111111
Q ss_pred hcCC-CCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHh----cCCCCChhhHH
Q 004269 439 FGNV-NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD----SKTPLGTPTYN 513 (764)
Q Consensus 439 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~ 513 (764)
.++. +...++.. .+.... .....++.+++-+-..+.+...+..|.+-|.. ....+|+.+.-
T Consensus 539 ma~~k~~~~ea~~-------------~lk~~l-~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysli 604 (1018)
T KOG2002|consen 539 MARDKNNLYEASL-------------LLKDAL-NIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLI 604 (1018)
T ss_pred HHHhccCcHHHHH-------------HHHHHH-hcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHH
Confidence 1100 00000000 000000 01111222222233344444444444442222 22223333333
Q ss_pred HHHHHHHH------------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHH
Q 004269 514 TVLHSLVE------------AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT 581 (764)
Q Consensus 514 ~li~~~~~------------~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 581 (764)
+|.+.|.+ .+..++|+++|.+..+.. +-|...-+.+--.++..|++..|..+|....+... -...+
T Consensus 605 aLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv 682 (1018)
T KOG2002|consen 605 ALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDV 682 (1018)
T ss_pred HhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCce
Confidence 33332221 223456666666666543 22445555555556666666666666666665532 12334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH--
Q 004269 582 YTALIKILLDYGDFDEALNLLDLVSLE-GIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD--PSTCHFVF-- 656 (764)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll-- 656 (764)
|-.+..+|..+|++-.|+++|+..... .-+.++.+...|.+++.+.|.+.+|.+.+..... ..|. ...|+..+
T Consensus 683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 683 WLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSNTSVKFNLALVL 760 (1018)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCccchHHhHHHHHH
Confidence 555666666666666666666665543 2233555666666666666666666666655553 2332 22233221
Q ss_pred ----------------HHHHhcCChHHHHHHHHHHHHhh
Q 004269 657 ----------------SGYVNCGFHNSAMEALQVLSMRM 679 (764)
Q Consensus 657 ----------------~~~~~~g~~~~a~~~~~~~~~~~ 679 (764)
......+..+.|.++|..|...+
T Consensus 761 kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 761 KKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 12333456778888888887544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-18 Score=168.96 Aligned_cols=321 Identities=12% Similarity=0.068 Sum_probs=257.3
Q ss_pred hCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHH
Q 004269 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL 144 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 144 (764)
..+++.....-....+.. +--.++|..+.+.+...|+...|+.+++.+++.. +.....|..+..++...|+.+.|...
T Consensus 95 ~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~ 172 (966)
T KOG4626|consen 95 GSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQC 172 (966)
T ss_pred ccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHH
Confidence 334444443333333322 4456789999999999999999999999999985 44677999999999999999999999
Q ss_pred HHHHhhhcCCCCChhhhHHHH-HHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcC
Q 004269 145 IYFLGERYGIYPILPVYNSFL-GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY 223 (764)
Q Consensus 145 ~~~m~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 223 (764)
|.+..+ +.|+.....+-+ ..+-..|++++|...|.+..+..+ --...|+.|-..+-.+|+...|.+.|++.++-.
T Consensus 173 ~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld 248 (966)
T KOG4626|consen 173 FFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD 248 (966)
T ss_pred HHHHHh---cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC
Confidence 988764 356666544433 334457999999999988877532 245678889889999999999999999999988
Q ss_pred CCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHH
Q 004269 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303 (764)
Q Consensus 224 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 303 (764)
+.-..+|-.|..+|...+.++.|...+.+... ..|+. ++.|..+...|
T Consensus 249 P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~------------------------------A~a~gNla~iY 296 (966)
T KOG4626|consen 249 PNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNH------------------------------AVAHGNLACIY 296 (966)
T ss_pred CcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcc------------------------------hhhccceEEEE
Confidence 88889999999999999999999999999887 67765 36788888889
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004269 304 GRTQNSGLAEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLA 382 (764)
Q Consensus 304 ~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 382 (764)
-..|++|.|+..|++..+. .|+ ...|+.|..++-..|++.+|.+.|......... .....+.|...|...|.++.|
T Consensus 297 yeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred eccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHH
Confidence 9999999999999999974 566 468999999999999999999999999987654 456677888888888888888
Q ss_pred HHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 004269 383 EALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRP 427 (764)
Q Consensus 383 ~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p 427 (764)
..+|.....-. -...+|.|...|-++|++++|+..|++..+ ++|
T Consensus 374 ~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-I~P 419 (966)
T KOG4626|consen 374 TRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR-IKP 419 (966)
T ss_pred HHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh-cCc
Confidence 88887776542 344577788888888888888888877665 444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-18 Score=180.76 Aligned_cols=304 Identities=13% Similarity=0.038 Sum_probs=176.0
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC--ChhhhHHHHHHHhccCCHHH
Q 004269 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP--ILPVYNSFLGACAKLHSMVH 176 (764)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~~ 176 (764)
..|+++.|.+.|.++.+.+ +.+..++..+...+...|++++|..+++.+.......+ +...+..+...|.+.|++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3344555555555555442 22333444555555555555555555554433111000 01234444555555555555
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCC-----HhhHHHHHHHhhccCCHHHHHHHHH
Q 004269 177 ANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS-----IFSLRKFVWSFTRLRDLKSAYETLQ 251 (764)
Q Consensus 177 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~ 251 (764)
|+.+|+.+.+.. .++..++..+...+...|++++|.+.++.+.+..+.+ ...+..+...+.+.|++++|...|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555554431 1234445555555555555555555555554432111 1134455556667777777777777
Q ss_pred HHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccH
Q 004269 252 HMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331 (764)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 331 (764)
++.+. .|+. ...+..+...+.+.|++++|.++|+++.+.+......++
T Consensus 205 ~al~~--~p~~------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 252 (389)
T PRK11788 205 KALAA--DPQC------------------------------VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVL 252 (389)
T ss_pred HHHhH--CcCC------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHH
Confidence 77662 2332 135666777777777777777777777764322223456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCccHHHHHHHHHh---
Q 004269 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC-TNPKPFSAFLAACDT--- 407 (764)
Q Consensus 332 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~li~~~~~--- 407 (764)
..+..++...|++++|...++.+.+.. |+...+..++..+.+.|++++|..+++++... ++...++.++..+..
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~ 330 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccC
Confidence 677777777778888877777777653 44455577777777888888888887766554 255567777777664
Q ss_pred cCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCC
Q 004269 408 MDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNA 444 (764)
Q Consensus 408 ~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~ 444 (764)
.|+.++++.++++|.+ +++|++. ..|.++|.
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~ 362 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGF 362 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCC------EECCCCCC
Confidence 5688999999999998 7776665 33655554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-17 Score=175.76 Aligned_cols=296 Identities=10% Similarity=0.014 Sum_probs=247.8
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccc---cHHHHHHHHHHHHcc
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGL---NNKCYLLMMQALCKG 135 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~ 135 (764)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+...+..+ ....+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334678899999999999999876 4456678889999999999999999999998864222 135678899999999
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCh----hhHHHHHHHHHhhcChhH
Q 004269 136 GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE----VTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 136 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~ 211 (764)
|++++|..+|+++.+. -+++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++
T Consensus 121 g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 9999999999999753 2456778999999999999999999999999887544432 234566677889999999
Q ss_pred HHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchh
Q 004269 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
|...++++.+..+.+...+..+...+.+.|++++|.++|+++.+. .|+..
T Consensus 199 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~---------------------------- 248 (389)
T PRK11788 199 ARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYL---------------------------- 248 (389)
T ss_pred HHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhH----------------------------
Confidence 999999999877777888999999999999999999999999873 33220
Q ss_pred hhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371 (764)
Q Consensus 292 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 371 (764)
..+++.++.+|...|++++|...++++.+. .|+...+..+...+.+.|++++|..+++++.+. .|+...+..++.
T Consensus 249 -~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~ 323 (389)
T PRK11788 249 -SEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD 323 (389)
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence 147889999999999999999999999886 577777788899999999999999999999876 578888888888
Q ss_pred HHHh---cCCHHHHHHHHHHHhhC
Q 004269 372 ECSK---ALELDLAEALLDQISRC 392 (764)
Q Consensus 372 ~~~~---~g~~~~a~~~~~~~~~~ 392 (764)
.+.. .|+.+++..+|+.+...
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHH
Confidence 7775 56899999999988753
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.5e-14 Score=146.16 Aligned_cols=550 Identities=11% Similarity=0.037 Sum_probs=377.8
Q ss_pred HHhhCC--cchHHHHHHhccccCCCCChhcHHHHHHHhh--CCCChhHHHHHHHHHHHcC--ccccHHHHHHHHHHHHcc
Q 004269 62 ALCRGE--RSRASHLLLNLGHAHHSLGADDFFHILNYCA--RSPDPLFVMETWRMMEEKE--IGLNNKCYLLMMQALCKG 135 (764)
Q Consensus 62 ~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~ 135 (764)
|...+. .+.|...|....... |+ .....+.++|. ..+++..|+.+|...+... ..||+.+ .+...+.+.
T Consensus 138 ~l~~~~~~~~~A~a~F~~Vl~~s--p~-Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl 212 (1018)
T KOG2002|consen 138 LLLEGDKSMDDADAQFHFVLKQS--PD-NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKL 212 (1018)
T ss_pred hhhcCCccHHHHHHHHHHHHhhC--Cc-chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhc
Confidence 444444 489999999888765 22 23445666666 4589999999999977643 4566654 333456799
Q ss_pred CCHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHHhcc---CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhH
Q 004269 136 GYLEEASNLIYFLGERYGIYPI-LPVYNSFLGACAKL---HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 136 g~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
|+.+.|+..|++..+-+ |+ +.++-.|.-.-... ..+..++.++...-... .-+++..+.|-..|.-.|+++.
T Consensus 213 ~~~~~a~~a~~ralqLd---p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~ 288 (1018)
T KOG2002|consen 213 GMSEKALLAFERALQLD---PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYER 288 (1018)
T ss_pred cchhhHHHHHHHHHhcC---hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHH
Confidence 99999999999997643 32 22222222222222 44556666665554432 2367788888899999999999
Q ss_pred HHHHHHHHHhcCCC---CHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCcccc
Q 004269 212 VHEIWEDYIKHYSL---SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288 (764)
Q Consensus 212 a~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (764)
+..+...+.+.-.. -...|..+.++|...|++++|...|.+..+ ..++.++
T Consensus 289 v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~------------------------ 342 (1018)
T KOG2002|consen 289 VWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFV------------------------ 342 (1018)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCcc------------------------
Confidence 99999999875322 334688999999999999999999998877 4444321
Q ss_pred chhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCH
Q 004269 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSDR----GLRNGMEVLKIMQQNNLKPQD 363 (764)
Q Consensus 289 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~ 363 (764)
..+--+...+.+.|+++.+...|+...+. .||. .|...|-..|...+ ..+.|..++....+.-+. |.
T Consensus 343 -----l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~ 414 (1018)
T KOG2002|consen 343 -----LPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DS 414 (1018)
T ss_pred -----ccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cH
Confidence 24456788899999999999999999885 4554 46666656666554 457777777777766533 66
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh----hCC---CCccHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCCCHH--
Q 004269 364 STIATLSVECSKALELDLAEALLDQIS----RCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQK----LRPDIR-- 430 (764)
Q Consensus 364 ~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~---~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~----~~p~~~-- 430 (764)
..|-.+...|....- ..++.+|.... ..+ .+...|.+..-+...|.+++|...|...... ..+|..
T Consensus 415 ~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~ 493 (1018)
T KOG2002|consen 415 EAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKS 493 (1018)
T ss_pred HHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccccc
Confidence 677777666655443 33355554433 222 6667888999999999999999999987652 334442
Q ss_pred ---HHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc-------CcHHHHHHHH
Q 004269 431 ---TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAE-------GMIRELIQYF 500 (764)
Q Consensus 431 ---t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~a~~~~ 500 (764)
|...-+..|. +.+.....+...+..+.+.. ...|++|.+. +...+|...+
T Consensus 494 ~~lt~~YNlarl~------------E~l~~~~~A~e~Yk~Ilkeh--------p~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 494 TNLTLKYNLARLL------------EELHDTEVAEEMYKSILKEH--------PGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred chhHHHHHHHHHH------------HhhhhhhHHHHHHHHHHHHC--------chhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 2222222221 11222222233333333321 1244555444 5667888888
Q ss_pred Hhc--CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhh------------CChhHHHH
Q 004269 501 CDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG-IPPNAATYNIMIDCCSII------------RCFKSASA 565 (764)
Q Consensus 501 ~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~------------g~~~~a~~ 565 (764)
... ....+...++-+...+.+...+..|.+-|....+.- ..+|..+...|-+.|... +..++|++
T Consensus 554 k~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq 633 (1018)
T KOG2002|consen 554 KDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQ 633 (1018)
T ss_pred HHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHH
Confidence 765 234455677777778888888888888777665432 236777766666655432 34678999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004269 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645 (764)
Q Consensus 566 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 645 (764)
+|....+.. +.|...-|-+.-.++..|++.+|.++|.+..+... .+..+|-.+...|...|++-.|+++|+.....-.
T Consensus 634 ~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 634 LYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred HHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999888864 34677778888899999999999999999987642 3556899999999999999999999999876533
Q ss_pred -CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 646 -QPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 646 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
.-+..+...|-.++.++|.+.+|.+.+..-..
T Consensus 712 ~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 712 KKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34566777888899999999999998765443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-14 Score=161.20 Aligned_cols=86 Identities=16% Similarity=-0.088 Sum_probs=40.2
Q ss_pred HHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC
Q 004269 94 LNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173 (764)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 173 (764)
...+.+.|+++.|+..|++.++. .|+...|..+..+|.+.|++++|++.++...+.+ +.+...|..+..+|...|+
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCC
Confidence 33444445555555555554443 2344444445555555555555555555443321 1223344444555555555
Q ss_pred HHHHHHHHHH
Q 004269 174 MVHANLCLDL 183 (764)
Q Consensus 174 ~~~A~~~~~~ 183 (764)
+++|+.-|..
T Consensus 210 ~~eA~~~~~~ 219 (615)
T TIGR00990 210 YADALLDLTA 219 (615)
T ss_pred HHHHHHHHHH
Confidence 5555544443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-15 Score=168.64 Aligned_cols=425 Identities=9% Similarity=-0.024 Sum_probs=250.8
Q ss_pred CCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHH
Q 004269 84 SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS 163 (764)
Q Consensus 84 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 163 (764)
+.++....-.+......|+.+.|+++|....... +.+...+..+...+.+.|++++|..+|++..+.. +.+...+..
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~ 88 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRG 88 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 3444444445555556666666666666665522 3344456666666666666666666666654432 223344555
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCH
Q 004269 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 243 (764)
+...+...|++++|+..++...+..+. +.. +..+..++...|+.++|...++++.+..|.+...+..+..++...+..
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Confidence 666666666666666666666654221 233 555555666666666666666666666666666666666666677777
Q ss_pred HHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHH-----HccCCH---HHHHHH
Q 004269 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC-----GRTQNS---GLAEQL 315 (764)
Q Consensus 244 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~~~~---~~a~~~ 315 (764)
+.|++.++.+.. .|+... .........+++.. ...+++ ++|++.
T Consensus 167 e~Al~~l~~~~~---~p~~~~-------------------------~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 167 APALGAIDDANL---TPAEKR-------------------------DLEADAAAELVRLSFMPTRSEKERYAIADRALAQ 218 (765)
T ss_pred HHHHHHHHhCCC---CHHHHH-------------------------HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence 777776665442 111000 00000111222222 222334 778889
Q ss_pred HHHHHHC-CCCCCccc-HH----HHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004269 316 MLQMQSL-GLQPSSHT-YD----GFIRAIVSDRGLRNGMEVLKIMQQNNLK-PQDSTIATLSVECSKALELDLAEALLDQ 388 (764)
Q Consensus 316 ~~~m~~~-g~~p~~~~-~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (764)
++.+.+. ...|+... +. ..+.++...|++++|...|+.+.+.+.. |+. ....+...|...|++++|+..|+.
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9998864 22333321 11 1134556779999999999999987643 332 223357789999999999999999
Q ss_pred HhhCC--C----CccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHH
Q 004269 389 ISRCT--N----PKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462 (764)
Q Consensus 389 ~~~~~--~----~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (764)
+.... + ...+..+..++...|++++|..+++.+....++....+..
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~---------------------------- 349 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS---------------------------- 349 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC----------------------------
Confidence 87653 1 1235556678899999999999999888722221111100
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004269 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLG---TPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539 (764)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g 539 (764)
....|+ ...+..+...+...|+.++|+++++++....
T Consensus 350 ----------------------------------------~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~ 389 (765)
T PRK10049 350 ----------------------------------------PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA 389 (765)
T ss_pred ----------------------------------------CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 001122 1233445556666777777777777776652
Q ss_pred CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004269 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ-TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615 (764)
Q Consensus 540 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 615 (764)
+-+...+..+...+...|++++|++.+++..+.. |+ ...+..+...+.+.|++++|+.+++++++. .|+..
T Consensus 390 -P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~ 461 (765)
T PRK10049 390 -PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDP 461 (765)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCH
Confidence 3344555666666667777777777777776643 43 445555556667777777777777777653 45443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-14 Score=160.94 Aligned_cols=423 Identities=12% Similarity=-0.036 Sum_probs=251.4
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc
Q 004269 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 240 (764)
+......+.+.|++++|+..|+.... +.|+...|..+..+|...|++++|.+.++..++..+.+..++..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 44455666777777777777777665 3456666777777777777777777777777776666677777777777888
Q ss_pred CCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004269 241 RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 241 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 320 (764)
|++++|...|..+... .+... .....++..+.. ..+........
T Consensus 208 g~~~eA~~~~~~~~~~--~~~~~------------------------------~~~~~~~~~~l~----~~a~~~~~~~l 251 (615)
T TIGR00990 208 GKYADALLDLTASCII--DGFRN------------------------------EQSAQAVERLLK----KFAESKAKEIL 251 (615)
T ss_pred CCHHHHHHHHHHHHHh--CCCcc------------------------------HHHHHHHHHHHH----HHHHHHHHHHH
Confidence 8888877777655442 11110 011111111111 11222222222
Q ss_pred HCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHhhCC---
Q 004269 321 SLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD-STIATLSVE---CSKALELDLAEALLDQISRCT--- 393 (764)
Q Consensus 321 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~---~~~~g~~~~a~~~~~~~~~~~--- 393 (764)
+.. .++...+..+ ..+...........-+....+. .+.. ..+..+... ....+++++|...|+.....+
T Consensus 252 ~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~ 327 (615)
T TIGR00990 252 ETK-PENLPSVTFV-GNYLQSFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG 327 (615)
T ss_pred hcC-CCCCCCHHHH-HHHHHHccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCC
Confidence 221 1122222222 2222111111111111111111 0100 001111000 122356777777777766532
Q ss_pred --CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHC
Q 004269 394 --NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARN 471 (764)
Q Consensus 394 --~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (764)
....|+.+...+...|++++|+..|++..+ ..|+.
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~-l~P~~------------------------------------------ 364 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIE-LDPRV------------------------------------------ 364 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCc------------------------------------------
Confidence 334566666777778888888888877665 22321
Q ss_pred CCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc-C-CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 004269 472 NIQHSHISMKNLLKALGAEGMIRELIQYFCDS-K-TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNI 549 (764)
Q Consensus 472 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ 549 (764)
...|..+...+...|++++|...|++. . .+.+...|..+...+...|++++|+..|++..+.. +.+...+..
T Consensus 365 -----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~ 438 (615)
T TIGR00990 365 -----TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQ 438 (615)
T ss_pred -----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHH
Confidence 112233445566667777777777653 1 23345678888888888899999999999888763 234566667
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----H-HHHHHHHH
Q 004269 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV-----L-LYNTILKK 623 (764)
Q Consensus 550 ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~-~~~~li~~ 623 (764)
+...+.+.|++++|...|+...+.. +.+...|+.+...+...|++++|.+.|++.....-..+. . .++..+..
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 7778888899999999998888752 335678888889999999999999999998754211111 1 12222223
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 624 ACEKGRIDVIEFIIEQMHQNKVQPDP-STCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 624 ~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
+...|++++|.+++++.... .|+. ..+..+...+...|++++|++.+++...
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34468999999999998763 4544 4566777799999999999999887543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.7e-16 Score=169.39 Aligned_cols=326 Identities=12% Similarity=-0.010 Sum_probs=252.0
Q ss_pred HHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004269 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 57 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 136 (764)
..+..+.+.|++++|..+++...... +-+...+..++.++...|+++.|.+.++++.+.. +.+...+..+...+...|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 34777888999999999999988776 3344455555566677899999999999998875 456678888888999999
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHH
Q 004269 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 137 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
++++|...+++..+.. +.+...+..+...+...|++++|...++.+....+.+. ..+..+ ..+...|++++|...+
T Consensus 125 ~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~-~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 125 QYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG-DMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH-HHHHHH-HHHHHcCCHHHHHHHH
Confidence 9999999999887542 33456788888899999999999999988876543322 233233 3477889999999999
Q ss_pred HHHHhcCC-CCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhh
Q 004269 217 EDYIKHYS-LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295 (764)
Q Consensus 217 ~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (764)
+.+.+..+ ++...+..+..++...|++++|...|+.+.+ ..|+. ...
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~------------------------------~~~ 248 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDG------------------------------AAL 248 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC------------------------------HHH
Confidence 98877643 3344455566788899999999999999887 44554 147
Q ss_pred HHHHHHHHHccCCHHH----HHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004269 296 FSDVIHACGRTQNSGL----AEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370 (764)
Q Consensus 296 ~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 370 (764)
+..+...+...|++++ |...|++..+. .|+ ...+..+...+...|++++|...++...+.... +......+.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 7888999999999885 78999998875 344 457778888888999999999999999887544 455677788
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCC-C-CccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 371 VECSKALELDLAEALLDQISRCT-N-PKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~~~~~~-~-~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
..|.+.|++++|...|+.+.... + ...+..+..++...|++++|...|++..+
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999887653 2 22233456678899999999999998876
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-14 Score=133.70 Aligned_cols=449 Identities=12% Similarity=0.107 Sum_probs=297.4
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcC--hhHHH-HHHHHHHhcCCCCHhhHHHHHH
Q 004269 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN--LSAVH-EIWEDYIKHYSLSIFSLRKFVW 235 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~a~-~~~~~~~~~~~~~~~~~~~li~ 235 (764)
.+=|.|+..- ..|.+..+.-+|+.|++.|+..+...-..|+...+-.++ +.-|+ +.|-.|.+....+..+|
T Consensus 117 ~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW----- 190 (625)
T KOG4422|consen 117 ETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW----- 190 (625)
T ss_pred cchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc-----
Confidence 3556666543 478888999999999999888887777777665433322 22111 12222222122222222
Q ss_pred HhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHH
Q 004269 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQL 315 (764)
Q Consensus 236 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 315 (764)
+.|++.+ -+|+..++ .+ .+|..+|.++++--+.+.|.++
T Consensus 191 ---K~G~vAd--L~~E~~PK----T~--------------------------------et~s~mI~Gl~K~~~~ERA~~L 229 (625)
T KOG4422|consen 191 ---KSGAVAD--LLFETLPK----TD--------------------------------ETVSIMIAGLCKFSSLERAREL 229 (625)
T ss_pred ---ccccHHH--HHHhhcCC----Cc--------------------------------hhHHHHHHHHHHHHhHHHHHHH
Confidence 4455433 33333221 11 4999999999999999999999
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 004269 316 MLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNP 395 (764)
Q Consensus 316 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 395 (764)
|++-.....+.+..+||.+|.+-.- ....++..+|....+.||..|+|+++.+..+.|+++.|..
T Consensus 230 ~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~----------- 294 (625)
T KOG4422|consen 230 YKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK----------- 294 (625)
T ss_pred HHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH-----------
Confidence 9999988888899999999987643 3348899999999999999999999998888888887754
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCC
Q 004269 396 KPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474 (764)
Q Consensus 396 ~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (764)
.|++++.+|++ |+.|...+|..+|..+.+-+++.+ .....+.+|.+.+....++
T Consensus 295 -----------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k--------~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 295 -----------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK--------VASSWINDIQNSLTGKTFK 349 (625)
T ss_pred -----------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh--------hhHHHHHHHHHhhccCccc
Confidence 35677888999 999999999999998888777533 1234556667777666665
Q ss_pred c----cHHHHHHHHHHHHhcCcHHHHHHHHHhc-------CCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 004269 475 H----SHISMKNLLKALGAEGMIRELIQYFCDS-------KTPLGT---PTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540 (764)
Q Consensus 475 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~---~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~ 540 (764)
| +...+.+-++.|.+..+.+-|.++..-. ...|+. +-|..+....++....+..+..|+.|.-.-+
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 4 3455666777788888888887774322 112232 2456677778888889999999999998888
Q ss_pred CCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HH
Q 004269 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL---LY 617 (764)
Q Consensus 541 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~ 617 (764)
-|+..+...++++....+.++-.-++|..+...|...+...-. +++..|......|+.. -+
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e----------------eil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE----------------EILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH----------------HHHHHHhcCCCCCCChHHHHH
Confidence 8999999999999999999999999999998876443322222 2223333222233322 33
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhccc-cCchHhhhHHHHH
Q 004269 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEE-VSTLEEKRSDFED 696 (764)
Q Consensus 618 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 696 (764)
..+..-|+. .-.+..+..-.+|....+.| ...+...-.+.+.|..++|.+++..+..++-+.. ......+...+..
T Consensus 494 ~~~~ak~aa-d~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~ 570 (625)
T KOG4422|consen 494 QVAFAKCAA-DIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDS 570 (625)
T ss_pred HHHHHHHHH-HHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHH
Confidence 333333321 12233334445566544443 3445556667888888888888888865543322 2445444555555
Q ss_pred hhhhccHHHHHHHHHHh
Q 004269 697 LILAEDSEAESRILQFC 713 (764)
Q Consensus 697 ~~~~~~~~~~~~~~~~~ 713 (764)
.....++-.+...++..
T Consensus 571 a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 571 AKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 55555555555555444
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-14 Score=134.77 Aligned_cols=436 Identities=13% Similarity=0.149 Sum_probs=236.4
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhh--CCCChhHH-HHHHHHHHHcCccccHHHHHHHHHHHHcc
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCA--RSPDPLFV-METWRMMEEKEIGLNNKCYLLMMQALCKG 135 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a-~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 135 (764)
+.....+|...++.-+|+.|.+.|++.+...-..|++.-+ .+.++.-+ .+-|-.|...| ..+..+| +.
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~ 192 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KS 192 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------cc
Confidence 3345567888888888888888887777776666655332 33333322 23333344443 2233333 34
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHH
Q 004269 136 GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215 (764)
Q Consensus 136 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 215 (764)
|++.+ -+|+..+ -+..+|.+||.++|+--..+.|.++|++......+.+..+||.+|.+-.-..+
T Consensus 193 G~vAd--L~~E~~P------KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~------- 257 (625)
T KOG4422|consen 193 GAVAD--LLFETLP------KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG------- 257 (625)
T ss_pred ccHHH--HHHhhcC------CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-------
Confidence 54443 3444333 24558888888888888888888888888877777788888888765432211
Q ss_pred HHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhh
Q 004269 216 WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295 (764)
Q Consensus 216 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (764)
.+++.+|....+.||. .|
T Consensus 258 -------------------------------K~Lv~EMisqkm~Pnl-------------------------------~T 275 (625)
T KOG4422|consen 258 -------------------------------KKLVAEMISQKMTPNL-------------------------------FT 275 (625)
T ss_pred -------------------------------HHHHHHHHHhhcCCch-------------------------------Hh
Confidence 4445555555555554 45
Q ss_pred HHHHHHHHHccCCHH----HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhH-HHHHHHHHHH----CCCCC----C
Q 004269 296 FSDVIHACGRTQNSG----LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN-GMEVLKIMQQ----NNLKP----Q 362 (764)
Q Consensus 296 ~~~li~~~~~~~~~~----~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~ 362 (764)
||+++++..+.|+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. ..++| |
T Consensus 276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d 355 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD 355 (625)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence 555555555555443 344555666666666666666666666666555533 2222222221 11211 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----------CCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHH
Q 004269 363 DSTIATLSVECSKALELDLAEALLDQISRCT----------NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRT 431 (764)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t 431 (764)
...+...+..|.+..+.+.|.++..-+.... ..+-|..+....++....+..+..|+.|.- -+-|+..+
T Consensus 356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~ 435 (625)
T KOG4422|consen 356 NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT 435 (625)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence 2334455555666666666666555444331 122345566667777777888888888877 66677777
Q ss_pred HHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhh
Q 004269 432 YELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPT 511 (764)
Q Consensus 432 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 511 (764)
...+++|....+.+ +-+..+..+++..|..
T Consensus 436 m~~~lrA~~v~~~~-------------e~ipRiw~D~~~~ght------------------------------------- 465 (625)
T KOG4422|consen 436 MIHLLRALDVANRL-------------EVIPRIWKDSKEYGHT------------------------------------- 465 (625)
T ss_pred HHHHHHHHhhcCcc-------------hhHHHHHHHHHHhhhh-------------------------------------
Confidence 77777765544433 1111222222222211
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhhCChhHHHH-HHHHHHHCCCCCCHHHHHHHHH
Q 004269 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA---TYNIMIDCCSIIRCFKSASA-LVSMMVRDGFYPQTMTYTALIK 587 (764)
Q Consensus 512 ~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~-~~~~~~~~g~~p~~~~~~~li~ 587 (764)
-+..--++++..|......|+.. -+.....-|+ -++.++.+ --.++.+. .......+.+.-
T Consensus 466 -----------~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~ 530 (625)
T KOG4422|consen 466 -----------FRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQ--DWPATSLNCIAI 530 (625)
T ss_pred -----------hhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhc--cCChhHHHHHHH
Confidence 11112223333333333333322 1222221111 11222211 12333333 344455666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004269 588 ILLDYGDFDEALNLLDLVSLEGI----PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 645 (764)
.+.+.|+.++|.+++..+..++- .|......-+++...+.++...|...++-|...++
T Consensus 531 Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 531 LLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 77788888888888877754321 22333333555666667777777777777765544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-14 Score=159.80 Aligned_cols=355 Identities=8% Similarity=-0.080 Sum_probs=191.5
Q ss_pred ccCCHHHHHHHHHHHhhhcCCC-CChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHH
Q 004269 134 KGGYLEEASNLIYFLGERYGIY-PILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 212 (764)
++.+|+.-.-+|....++..-. -+..-...++..+.+.|+++.|+.+++......+.+ ...+..+..+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 4455555544554443321100 111223344555666677777777766666654332 23333344445556666666
Q ss_pred HHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhh
Q 004269 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
.+.++.+.+..|.+...+..+...+...|+++.|...++++.+ +.|+.
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~--l~P~~------------------------------ 143 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL--AFSGN------------------------------ 143 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCc------------------------------
Confidence 6666666666666666666666666777777777777776665 34443
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004269 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVE 372 (764)
Q Consensus 293 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 372 (764)
...|..+...+...|++++|...++.+.... |+.......+..+...|++++|...++.+.+....++......+...
T Consensus 144 ~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~ 221 (656)
T PRK15174 144 SQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT 221 (656)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 1356666666777777777777666665432 22222222223355666777777766666655433333334444455
Q ss_pred HHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHH----HHHHHHHHhccCCCCHHHHHHHHHHhcCCCCch
Q 004269 373 CSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPER----AIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPY 446 (764)
Q Consensus 373 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~----a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~ 446 (764)
+.+.|+.++|...++...... +...+..+...+...|++++ |...|++..+ ..|+
T Consensus 222 l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~-l~P~------------------ 282 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ-FNSD------------------ 282 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh-hCCC------------------
Confidence 566666666666666655442 44445556666666666654 4555555543 1222
Q ss_pred hhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc-CCCC-ChhhHHHHHHHHHHcCC
Q 004269 447 EEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-KTPL-GTPTYNTVLHSLVEAQE 524 (764)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~~~ 524 (764)
+...+..+...+.+.|++++|...+++. ...| +...+..+...+.+.|+
T Consensus 283 -----------------------------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~ 333 (656)
T PRK15174 283 -----------------------------NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ 333 (656)
T ss_pred -----------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 1122333444555555555555555442 1122 23345555666666666
Q ss_pred hHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhhCChhHHHHHHHHHHHC
Q 004269 525 SHRAMEIFKQMKTCGIPPNAAT-YNIMIDCCSIIRCFKSASALVSMMVRD 573 (764)
Q Consensus 525 ~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~ 573 (764)
+++|+..|+++... .|+... +..+..++...|+.++|...|+.+.+.
T Consensus 334 ~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 334 YTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 66666666666654 243322 222344556666666666666666654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.3e-14 Score=156.92 Aligned_cols=189 Identities=10% Similarity=-0.003 Sum_probs=140.4
Q ss_pred HHhcCcHHHHHHHHHhcCCCC-Chh--hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhhCCh
Q 004269 487 LGAEGMIRELIQYFCDSKTPL-GTP--TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP---NAATYNIMIDCCSIIRCF 560 (764)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~ 560 (764)
+...|++++|...|+.+.... +.. .-..+...|...|++++|+..|+++.+..... .......+..++...|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 345688899999998864332 111 11224668889999999999999987653111 124456666778899999
Q ss_pred hHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004269 561 KSASALVSMMVRDGF-----------YPQ---TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626 (764)
Q Consensus 561 ~~a~~~~~~~~~~g~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 626 (764)
++|..+++.+.+... .|+ ...+..+...+...|+.++|+++++++... .+.+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence 999999998887531 123 234556778888999999999999999864 24567788999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 004269 627 KGRIDVIEFIIEQMHQNKVQPDPS-TCHFVFSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 627 ~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
.|+.++|++.+++..+ ..|+.. .+......+...|++++|..+++.+..+
T Consensus 406 ~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 406 RGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred cCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999986 567754 4445555888999999999999987653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-13 Score=149.42 Aligned_cols=439 Identities=10% Similarity=0.041 Sum_probs=264.9
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCCh--hhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcC
Q 004269 131 ALCKGGYLEEASNLIYFLGERYGIYPIL--PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN 208 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 208 (764)
...+.|+++.|+..|++..+.+ |+. ..+ .++..+...|+.++|+..++...... .........+...+...|+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC
Confidence 4667788888888888776543 332 133 67777777788888888887776210 1111222222345666677
Q ss_pred hhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCcccc
Q 004269 209 LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288 (764)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (764)
+++|.++++.+.+..+.++..+..++..+...++.++|++.++++.+ ..|+.
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~--~dp~~-------------------------- 169 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE--RDPTV-------------------------- 169 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc--cCcch--------------------------
Confidence 77777777777777666666666777777777777777777777665 33332
Q ss_pred chhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 004269 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367 (764)
Q Consensus 289 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 367 (764)
..+-.++..+...++..+|++.++++.+. .|+ ...+..++.++.+.|-...|.++...-... +.+ ....
T Consensus 170 -----~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~--~~~~ 239 (822)
T PRK14574 170 -----QNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSA--EHYR 239 (822)
T ss_pred -----HHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCH--HHHH
Confidence 23333333333344554577777777765 343 344555666666666666666554432110 111 1111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC---HHHHHHHHHHHhc--cCCCCHHH-HHHHHHHhcC
Q 004269 368 TLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDK---PERAIKIFAKMRQ--KLRPDIRT-YELLFSLFGN 441 (764)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~l~~~m~~--~~~p~~~t-~~~ll~~~~~ 441 (764)
.| +.+.|.+..+.-... . -....+ .+.|+.-++.+.. +-.|.... |...
T Consensus 240 ~l--------~~~~~a~~vr~a~~~--~---------~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~------ 294 (822)
T PRK14574 240 QL--------ERDAAAEQVRMAVLP--T---------RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRA------ 294 (822)
T ss_pred HH--------HHHHHHHHHhhcccc--c---------ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHH------
Confidence 10 001111111110000 0 000112 2334444444333 22222111 1100
Q ss_pred CCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCC-Chh--hHHHHHHH
Q 004269 442 VNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPL-GTP--TYNTVLHS 518 (764)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~li~~ 518 (764)
..-.+-++.+.++..++++.++.+...+ .+. +--++.++
T Consensus 295 --------------------------------------~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 295 --------------------------------------RIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred --------------------------------------HHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 0113345667788888888888875433 222 44567888
Q ss_pred HHHcCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCC-----------CCC--H-
Q 004269 519 LVEAQESHRAMEIFKQMKTCG-----IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF-----------YPQ--T- 579 (764)
Q Consensus 519 ~~~~~~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-----------~p~--~- 579 (764)
|...+++++|+.+|++..... ..++......|.-++...+++++|..+++.+.+... .|+ -
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 999999999999999986643 122334457788889999999999999999887311 122 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 004269 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS-TCHFVFSG 658 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~ 658 (764)
..+..++..+.-.|++.+|++.++++.... +-|......+.+.+...|+..+|++.++.... +.|+.. +......+
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHH
Confidence 223456777888999999999999997543 55888899999999999999999999977764 567644 44455567
Q ss_pred HHhcCChHHHHHHHHHHHHh
Q 004269 659 YVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 659 ~~~~g~~~~a~~~~~~~~~~ 678 (764)
+...|+|.+|..+.+.+..+
T Consensus 494 al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhh
Confidence 88889999999988877553
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-13 Score=147.54 Aligned_cols=454 Identities=10% Similarity=0.015 Sum_probs=302.6
Q ss_pred HHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHH
Q 004269 60 VDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLE 139 (764)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 139 (764)
....++|+++.|+..|++..+....-.+..+ .++..+...|+.+.|+.++++.... ...+......+...|...|+++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 3478999999999999999887622112344 8888888889999999999999822 1223334444466888999999
Q ss_pred HHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHH
Q 004269 140 EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY 219 (764)
Q Consensus 140 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 219 (764)
+|+++|+++.+.++ .+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|.+.++++
T Consensus 120 ~Aiely~kaL~~dP--~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 120 QALALWQSSLKKDP--TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHhhCC--CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999987653 34556678888999999999999999999885 556556644443444456665699999999
Q ss_pred HhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHH
Q 004269 220 IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299 (764)
Q Consensus 220 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 299 (764)
.+..|.+...+..++.+..+.|-...|.++...-+. .+.... .+.+.......+
T Consensus 196 l~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~------~f~~~~--------------------~~~l~~~~~a~~ 249 (822)
T PRK14574 196 VRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPN------LVSAEH--------------------YRQLERDAAAEQ 249 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc------ccCHHH--------------------HHHHHHHHHHHH
Confidence 999999999999999999999999999877665332 110000 000000000111
Q ss_pred HHHH-----HccCC---HHHHHHHHHHHHHC-CCCCCccc-----HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 004269 300 IHAC-----GRTQN---SGLAEQLMLQMQSL-GLQPSSHT-----YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365 (764)
Q Consensus 300 i~~~-----~~~~~---~~~a~~~~~~m~~~-g~~p~~~~-----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 365 (764)
++.- ....+ .+.|+.-++.+... +-.|.... ..--+-++...++..++.+.|+.+...+.+....+
T Consensus 250 vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 250 VRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 1110 01122 34566666665542 22233222 22345577789999999999999999887666778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC--------CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004269 366 IATLSVECSKALELDLAEALLDQISRCT--------NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFS 437 (764)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~ 437 (764)
-..+.++|...++.++|..++..+.... +......|..+|...+++++|..+++++.+ ..|-.+. .
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~-~~p~~~~---~-- 403 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE-QTPYQVG---V-- 403 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCCcEEe---c--
Confidence 8899999999999999999999986532 122246788999999999999999999986 2231000 0
Q ss_pred HhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChh-hHHHHH
Q 004269 438 LFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTP-TYNTVL 516 (764)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~li 516 (764)
+.... ..+.||-. .+..++
T Consensus 404 -~~~~~-----------------------------------------------------------~~pn~d~~~~~~l~a 423 (822)
T PRK14574 404 -YGLPG-----------------------------------------------------------KEPNDDWIEGQTLLV 423 (822)
T ss_pred -cCCCC-----------------------------------------------------------CCCCccHHHHHHHHH
Confidence 00000 00122222 333345
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004269 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596 (764)
Q Consensus 517 ~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 596 (764)
..++..|+..+|++.++++.... +-|......+...+...|.+.+|++.++...... +-+..+....+..+...|+++
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHH
Confidence 55667777777777777776653 3456666666677777777777777776655542 223445556666677777777
Q ss_pred HHHHHHHHHHHCCCCCCHH
Q 004269 597 EALNLLDLVSLEGIPHDVL 615 (764)
Q Consensus 597 ~A~~~~~~m~~~~~~p~~~ 615 (764)
+|..+.+.+.+. .|+..
T Consensus 502 ~A~~~~~~l~~~--~Pe~~ 518 (822)
T PRK14574 502 QMELLTDDVISR--SPEDI 518 (822)
T ss_pred HHHHHHHHHHhh--CCCch
Confidence 777777776643 44433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-14 Score=146.30 Aligned_cols=529 Identities=12% Similarity=0.051 Sum_probs=264.0
Q ss_pred HHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhh
Q 004269 107 METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 107 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
..+|..+...|+.|+..+|..+|..||..|+++.|- +|..|.- ...+.+...++.++.+..+.++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~-ksLpv~e~vf~~lv~sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI-KSLPVREGVFRGLVASHKEANDAENPK-------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhc-ccccccchhHHHHHhcccccccccCCC--------
Confidence 345566666666666666666666666666666666 6666642 344555566666666666666655554
Q ss_pred cCCCCChhhHHHHHHHHHhhcChhH---HHHHHHHHHhcC------CCC-------------HhhHHHHHHHhhccCCHH
Q 004269 187 RMVGKNEVTYTELLKLAVWQKNLSA---VHEIWEDYIKHY------SLS-------------IFSLRKFVWSFTRLRDLK 244 (764)
Q Consensus 187 ~g~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~------~~~-------------~~~~~~li~~~~~~g~~~ 244 (764)
.|...||..|+.+|...||+.. .++.++.+...+ .+. ...-.+.+......|.++
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 4566666666666666666543 222111111110 000 001112222233334444
Q ss_pred HHHHHHHHHH------------HhhccCcchhcccc--cccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHH
Q 004269 245 SAYETLQHMV------------ALAMMGKLYINRTS--EGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSG 310 (764)
Q Consensus 245 ~A~~~~~~~~------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 310 (764)
.+++++..++ +.+..++.++.+.+ |...++ .. + ..+|.+++.+-..+|+.+
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~------------~--s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP------------T--SETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC------------C--hHHHHHHHHHHHhcCchh
Confidence 4444443222 22233333332222 222222 11 1 269999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004269 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQIS 390 (764)
Q Consensus 311 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 390 (764)
.|..++.+|.+.|...+.+-|..|+-+ .++...+..+++-|...|+.|+..|+...+..+.++|....+....+.-.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~h 298 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAH 298 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhh
Confidence 999999999999999999988888766 88889999999999999999999999988877777665332222111000
Q ss_pred hCCCCccHHHHHHHHHhcCCHHH-----HHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCchhhchhhhhh---------
Q 004269 391 RCTNPKPFSAFLAACDTMDKPER-----AIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV--------- 455 (764)
Q Consensus 391 ~~~~~~~~~~li~~~~~~~~~~~-----a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~--------- 455 (764)
.- ....+.++..+.....+.+. ....+.+..- |+......|....... ..|.-.+...+...+
T Consensus 299 g~-tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~ 376 (1088)
T KOG4318|consen 299 GF-TAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSG 376 (1088)
T ss_pred hh-hHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCc
Confidence 00 11112222222111111111 1111111111 2222222222111111 111111111111000
Q ss_pred ---h-hHHHHHHHHHHHHH----------CCCCccHHHH--HHHHHHHHhcCcHHHHHHHHHhc---------CC-----
Q 004269 456 ---D-SAKRINAIEMDMAR----------NNIQHSHISM--KNLLKALGAEGMIRELIQYFCDS---------KT----- 505 (764)
Q Consensus 456 ---~-~~~~~~~~~~~~~~----------~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~---------~~----- 505 (764)
+ .+.....++..... .|+..+..++ -.+.....+. +...+.+-+... ..
T Consensus 377 ~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~ 455 (1088)
T KOG4318|consen 377 QNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIA 455 (1088)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhh
Confidence 0 00000011110000 0110000000 0000000000 111111111000 00
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHC--CCCCCHHHHH
Q 004269 506 PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD--GFYPQTMTYT 583 (764)
Q Consensus 506 ~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~p~~~~~~ 583 (764)
.+-...-+.++..++..-+..+++..-+.....-+ | ..|..||+-++.....+.|..+.++.... .+..|..-+.
T Consensus 456 h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~ 532 (1088)
T KOG4318|consen 456 HLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMT 532 (1088)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHH
Confidence 00011233445555555555555543333332211 1 56777777777777778888777776643 3445566677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004269 584 ALIKILLDYGDFDEALNLLDLVSLEG-IPHD-VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661 (764)
Q Consensus 584 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 661 (764)
.+.+.+.+.+....+..++.++.+.- ..|+ ..++--++.+....|..+...++++-+...|+.-+ .-++....+
T Consensus 533 ~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLr 608 (1088)
T KOG4318|consen 533 SLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLR 608 (1088)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEee
Confidence 77788888888888888887776521 1222 33455566666777777777777777776665542 234445566
Q ss_pred cCChHHHHHHHHHHH
Q 004269 662 CGFHNSAMEALQVLS 676 (764)
Q Consensus 662 ~g~~~~a~~~~~~~~ 676 (764)
.++...|.++.+...
T Consensus 609 kdd~s~a~ea~e~~~ 623 (1088)
T KOG4318|consen 609 KDDQSAAQEAPEPEE 623 (1088)
T ss_pred ccchhhhhhcchHHH
Confidence 777777777766543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.9e-11 Score=125.33 Aligned_cols=590 Identities=10% Similarity=0.024 Sum_probs=357.2
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 132 (764)
..+......+...|+.++|.+++.+.+... +.....|..|...|-+.|+.+.+...+-...... +.|...|..+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334444444445699999999999999887 6777889999999999999999988876665553 55778999999999
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHH----HHHHHHhhcC
Q 004269 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE----LLKLAVWQKN 208 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~----ll~~~~~~~~ 208 (764)
.+.|.+++|.-.|.+..+.. +++...+--=...|-+.|+...|.+.|.++....+..|..-+.. +++.+...++
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999998654 34544445556678889999999999999998754334333333 3455666777
Q ss_pred hhHHHHHHHHHHh--cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCcc
Q 004269 209 LSAVHEIWEDYIK--HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286 (764)
Q Consensus 209 ~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (764)
.+.|.+.++.... +...+...++.++..|.+...++.|......+..+...+++.-. ....-+.....+.-..
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~-----~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW-----DTDERRREEPNALCEV 370 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh-----hhhhhccccccccccC
Confidence 7999998888876 35566677888999999999999999988888774444433110 0000000000000000
Q ss_pred cc---chhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 004269 287 PV---MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP--SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP 361 (764)
Q Consensus 287 ~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 361 (764)
+. .++ .. --++-++...+..+....+.....+..+.| +...|.-+..++...|.+.+|..+|..+......-
T Consensus 371 ~~~~s~~l--~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~ 447 (895)
T KOG2076|consen 371 GKELSYDL--RV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ 447 (895)
T ss_pred CCCCCccc--hh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc
Confidence 00 011 01 123334444444445555555555555333 44578888999999999999999999999876655
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHh
Q 004269 362 QDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLF 439 (764)
Q Consensus 362 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~ 439 (764)
+..+|-.+..+|...|..+.|...|..+.... +...--+|-..+.+.|+.++|++.+..|.. ||..+- .+|
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~---~D~~~~----e~~ 520 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN---PDGRNA----EAC 520 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC---CCccch----hhc
Confidence 67788999999999999999999999998762 344444566778999999999999998753 332210 000
Q ss_pred cCCCCchhhchhhhhhhhHHHHHHHHHHHHHC-CC-CccHHHHHHHHHHHHhcCcH----HHHHHHHHhc-CCCCChhhH
Q 004269 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARN-NI-QHSHISMKNLLKALGAEGMI----RELIQYFCDS-KTPLGTPTY 512 (764)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~-~~~~~~~~~ 512 (764)
+. .. ..++..-...+... |- ..-..+-..|++.+.+...+ ..+...-... ........-
T Consensus 521 a~----~~----------e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~ 586 (895)
T KOG2076|consen 521 AW----EP----------ERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELL 586 (895)
T ss_pred cc----cH----------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhH
Confidence 00 00 00000000000000 00 00011112233322221111 0111100000 011122233
Q ss_pred HHHHHHHHHcCChHHHH------HHHHHHHhCCCCCCH--HHHHHHHHHHHhhCChhHHHHHHHHHHHCCC--CCCH---
Q 004269 513 NTVLHSLVEAQESHRAM------EIFKQMKTCGIPPNA--ATYNIMIDCCSIIRCFKSASALVSMMVRDGF--YPQT--- 579 (764)
Q Consensus 513 ~~li~~~~~~~~~~~A~------~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~p~~--- 579 (764)
-.++.+-.+.++..... ..+..-...|+.-+. ..+.-++.++++.+++++|+.+...+..... .++.
T Consensus 587 ~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k 666 (895)
T KOG2076|consen 587 KQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRK 666 (895)
T ss_pred HHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHH
Confidence 33344444443322211 112222223333232 2456677788899999999999988876532 2222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004269 580 MTYTALIKILLDYGDFDEALNLLDLVSLE-GIPHD---VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 655 (764)
..-...+.+.+..+++..|.+.++.|... ++..+ ...|+...+...+.++-..-.+.+..+. -..|+...+-.+
T Consensus 667 ~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~--~~~~~~~~~l~~ 744 (895)
T KOG2076|consen 667 ELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLL--VKNKDDTPPLAL 744 (895)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCccCCcceee
Confidence 22345666777889999999999999864 22222 3356666666666665444444444433 233333222233
Q ss_pred HH--HHHhcCChHHHHHHHHHHHH
Q 004269 656 FS--GYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 656 l~--~~~~~g~~~~a~~~~~~~~~ 677 (764)
+. .+...+.+.-|+..+-....
T Consensus 745 i~gh~~~~~~s~~~Al~~y~ra~~ 768 (895)
T KOG2076|consen 745 IYGHNLFVNASFKHALQEYMRAFR 768 (895)
T ss_pred eechhHhhccchHHHHHHHHHHHH
Confidence 32 45677888888886665543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.6e-10 Score=111.98 Aligned_cols=559 Identities=13% Similarity=0.050 Sum_probs=354.7
Q ss_pred hhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHH
Q 004269 64 CRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASN 143 (764)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 143 (764)
+....+.|..+........ |.++..|. .+---..+...-.+++.+.++. ++.++..|...+ .....+.|+-
T Consensus 327 RLhp~d~aK~vvA~Avr~~-P~Sv~lW~---kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~dari 397 (913)
T KOG0495|consen 327 RLHPPDVAKTVVANAVRFL-PTSVRLWL---KAADLESDTKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARI 397 (913)
T ss_pred hcCChHHHHHHHHHHHHhC-CCChhhhh---hHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHH
Confidence 4455566666666555433 22222222 2221222334445666666665 344555554433 3345555777
Q ss_pred HHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh--
Q 004269 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-- 221 (764)
Q Consensus 144 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-- 221 (764)
++.+..+- ++.+. -|.-+|++...++.|.++++..++. ++.+...|.+....=-..|+.+...++.++-+.
T Consensus 398 lL~rAvec--cp~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L 470 (913)
T KOG0495|consen 398 LLERAVEC--CPQSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSEL 470 (913)
T ss_pred HHHHHHHh--ccchH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 77766542 22222 2444556666777777777777764 455666666666656667777777777666553
Q ss_pred ---cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHH
Q 004269 222 ---HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298 (764)
Q Consensus 222 ---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (764)
|...+...|..=...|-..|..-.+..+.......|+...+. ..+|+.
T Consensus 471 ~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~-----------------------------~~tw~~ 521 (913)
T KOG0495|consen 471 QANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR-----------------------------KSTWLD 521 (913)
T ss_pred hhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh-----------------------------HhHHhh
Confidence 355566666666666767777777777777777666655442 137777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004269 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377 (764)
Q Consensus 299 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 377 (764)
-...|.+.+.++-|..+|....+- -|. ...|..+...=-..|..++...++++....-.+ ....+-....-+...|
T Consensus 522 da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 522 DAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAG 598 (913)
T ss_pred hHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcC
Confidence 777777777777777777777653 333 334444444444567777777777777766544 4455555666666777
Q ss_pred CHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhh
Q 004269 378 ELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455 (764)
Q Consensus 378 ~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~ 455 (764)
++..|+.++...-+.. +...|-+-+..-..+..++.|..+|.+.+. ..|+...|.--++.-- .+
T Consensus 599 dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~-~sgTeRv~mKs~~~er-------------~l 664 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS-ISGTERVWMKSANLER-------------YL 664 (913)
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc-cCCcchhhHHHhHHHH-------------Hh
Confidence 7777777777766543 555677777777777777777777777766 3344444332221111 11
Q ss_pred hhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc-CCCC-ChhhHHHHHHHHHHcCChHHHHHHHH
Q 004269 456 DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-KTPL-GTPTYNTVLHSLVEAQESHRAMEIFK 533 (764)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~A~~l~~ 533 (764)
+..+....+.+...+. ++.-...|-.+-..+.+.++++.|...+... ..-| .+..|-.+...--+.|.+-+|..+++
T Consensus 665 d~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred hhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 2222222222222221 1222334555666677788888888887653 2334 45578888777778889999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004269 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613 (764)
Q Consensus 534 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 613 (764)
..+-.+ +-|...|...|+.=.+.|+.+.|..++.+..+. ++-+...|.--|....+.++-..+.+.+++ +..|
T Consensus 744 rarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~d 816 (913)
T KOG0495|consen 744 RARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHD 816 (913)
T ss_pred HHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCC
Confidence 988776 347788888999999999999999999777765 455677888888888887776666666654 3568
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhhhccccCchHhhhH
Q 004269 614 VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS-TCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRS 692 (764)
Q Consensus 614 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 692 (764)
+.....+...+....+++.|.+.|++... ..||.. +|..+...+.+.|.-+.-.+++.......- ..+..|..+..
T Consensus 817 phVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP-~hG~~W~avSK 893 (913)
T KOG0495|consen 817 PHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP-THGELWQAVSK 893 (913)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC-CCCcHHHHHhh
Confidence 88888888889999999999999999985 556654 666677788999988888888885543221 12346655544
Q ss_pred HHH
Q 004269 693 DFE 695 (764)
Q Consensus 693 ~~~ 695 (764)
.+.
T Consensus 894 ~i~ 896 (913)
T KOG0495|consen 894 DIK 896 (913)
T ss_pred hHH
Confidence 443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.3e-12 Score=120.95 Aligned_cols=479 Identities=12% Similarity=0.084 Sum_probs=286.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhh-HHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHH-
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVY-NSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL- 200 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll- 200 (764)
.+...|.+.|.......+|+..++-+. ++...|+.-.. -.+-+.+.+..++.+|++.|+.....-+..+..+-..++
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiiv-knkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIV-KNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhh-cccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 344556677777788889999998775 45666665433 235567888899999999998877753333333433333
Q ss_pred ---HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccccccc
Q 004269 201 ---KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277 (764)
Q Consensus 201 ---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (764)
-.+.+.|.++.|...|+.+.+.. |+..+-..|+-++..-|+-++..+.|.+|...-..+++. +.
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~~-pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~ddd------------ky 347 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEEA-PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDD------------KY 347 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHhC-ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcc------------cc
Confidence 35778999999999999998754 455554455556667899999999999998743333320 01
Q ss_pred CCCccCCccccchhhhh-hHHHHHHHHHccCC--HHHHHHHHHHHHHCCCCCCccc-HHHH-------------------
Q 004269 278 DIPIPLNALPVMKVLRW-SFSDVIHACGRTQN--SGLAEQLMLQMQSLGLQPSSHT-YDGF------------------- 334 (764)
Q Consensus 278 ~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~-~~~l------------------- 334 (764)
..+. ..|..+.... .-|-.++-.-+.+. -++++-.--++..--+.||-.. |.-.
T Consensus 348 i~~~---ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ 424 (840)
T KOG2003|consen 348 IKEK---DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEIN 424 (840)
T ss_pred cCCc---CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhh
Confidence 1000 1111111101 11112222222221 1222222222222112232210 0000
Q ss_pred -HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHhhCCCCccHHHHH-----HHHH
Q 004269 335 -IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSK--ALELDLAEALLDQISRCTNPKPFSAFL-----AACD 406 (764)
Q Consensus 335 -l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~li-----~~~~ 406 (764)
..-+.+.|+++.|.++++-+.+..-+.-....+.|-..+.- -.++..|.+.-+..... .-||.-. ..-.
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~---dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI---DRYNAAALTNKGNIAF 501 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc---cccCHHHhhcCCceee
Confidence 01133455555555555555544332222222222222221 22344444444443321 2222211 1112
Q ss_pred hcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 004269 407 TMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKA 486 (764)
Q Consensus 407 ~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 486 (764)
.+|++++|.+.|++... ..-......|| +--.
T Consensus 502 ~ngd~dka~~~ykeal~-----------------------------------------------ndasc~ealfn-iglt 533 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALN-----------------------------------------------NDASCTEALFN-IGLT 533 (840)
T ss_pred ecCcHHHHHHHHHHHHc-----------------------------------------------CchHHHHHHHH-hccc
Confidence 34556666666655543 11111111111 1123
Q ss_pred HHhcCcHHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHH
Q 004269 487 LGAEGMIRELIQYFCDSK--TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSAS 564 (764)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 564 (764)
+.+.|++++|+..|-+.. ...+....-.+.+.|-...+..+|++++-+.... ++.|....+.|...|-+.|+-.+|.
T Consensus 534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhh
Confidence 566788999999886641 1234445555677788888999999998776553 4557788889999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHC
Q 004269 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC-EKGRIDVIEFIIEQMHQN 643 (764)
Q Consensus 565 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~ 643 (764)
+.+-.--+. ++-+..+..-|..-|....-+++|+.+|++.. -++|+..-|..+|..|. +.|++++|..+++....
T Consensus 613 q~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr- 688 (840)
T KOG2003|consen 613 QCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR- 688 (840)
T ss_pred hhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-
Confidence 887544433 56678888888889999999999999999875 57999999999988775 67999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004269 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675 (764)
Q Consensus 644 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 675 (764)
.++-|..+...|++.+...|.. ++.++-+++
T Consensus 689 kfpedldclkflvri~~dlgl~-d~key~~kl 719 (840)
T KOG2003|consen 689 KFPEDLDCLKFLVRIAGDLGLK-DAKEYADKL 719 (840)
T ss_pred hCccchHHHHHHHHHhccccch-hHHHHHHHH
Confidence 5777888888899888887753 344444444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-10 Score=119.22 Aligned_cols=615 Identities=10% Similarity=-0.023 Sum_probs=368.6
Q ss_pred hHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChh
Q 004269 9 RFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGAD 88 (764)
Q Consensus 9 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 88 (764)
.+...+..+...|+.++|. .++.++ ....|.. ...|..+...|-..|+.++++..|-..-..+ +-|..
T Consensus 141 ~ll~eAN~lfarg~~eeA~-~i~~Ev---------Ikqdp~~-~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e 208 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAE-EILMEV---------IKQDPRN-PIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYE 208 (895)
T ss_pred HHHHHHHHHHHhCCHHHHH-HHHHHH---------HHhCccc-hhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChH
Confidence 4445555555569999999 555544 3333432 3334455666888999999998887766554 45667
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhH----HH
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN----SF 164 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~----~l 164 (764)
.|..+.....+.|++..|+-+|.+.++.. +++...+-.-...|-+.|+...|..-|.++.+..+ +.|..-.. ..
T Consensus 209 ~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~ 286 (895)
T KOG2076|consen 209 LWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRV 286 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHH
Confidence 78888888888899999999999999986 44554444557788999999999999999876543 22333233 34
Q ss_pred HHHHhccCCHHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh----------------------
Q 004269 165 LGACAKLHSMVHANLCLDLMDSR-MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK---------------------- 221 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---------------------- 221 (764)
+..+...++.+.|.+.++...+. +-..+...++.+...+.+...++.+.........
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~ 366 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA 366 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence 55566777789999999888763 2234555677777778888888888776655544
Q ss_pred ------cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhh
Q 004269 222 ------HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295 (764)
Q Consensus 222 ------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (764)
...++..+ -.++-++.+....+....+..-..+.+..|...+ ..
T Consensus 367 ~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~-----------------------------dL 416 (895)
T KOG2076|consen 367 LCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDV-----------------------------DL 416 (895)
T ss_pred cccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhH-----------------------------HH
Confidence 01222222 1233334444555555555555565555554421 47
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004269 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSK 375 (764)
Q Consensus 296 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 375 (764)
|.-+..+|...|++.+|+.+|..+...-..-+...|-.+.+.+-..|..+.|.+.|......... +...-.+|...+-+
T Consensus 417 ~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~ 495 (895)
T KOG2076|consen 417 YLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQ 495 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHh
Confidence 88889999999999999999999998655556667888888888999999999999999886543 44556678888999
Q ss_pred cCCHHHHHHHHHHHhhCC----CCcc-------HHHHHHHHHhcCCHHHHHHHHHHHhc-c-----CCCCHHH-------
Q 004269 376 ALELDLAEALLDQISRCT----NPKP-------FSAFLAACDTMDKPERAIKIFAKMRQ-K-----LRPDIRT------- 431 (764)
Q Consensus 376 ~g~~~~a~~~~~~~~~~~----~~~~-------~~~li~~~~~~~~~~~a~~l~~~m~~-~-----~~p~~~t------- 431 (764)
.|+.++|.+.+..+...+ .... --.....+.+.|+.++-+..-..|.. . +-|+..-
T Consensus 496 ~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~ 575 (895)
T KOG2076|consen 496 LGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIA 575 (895)
T ss_pred cCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhc
Confidence 999999999999865433 1111 22344567788888876666555543 1 2121111
Q ss_pred ----------HHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccH--HHHHHHHHHHHhcCcHHHHHHH
Q 004269 432 ----------YELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSH--ISMKNLLKALGAEGMIRELIQY 499 (764)
Q Consensus 432 ----------~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~ 499 (764)
...++.+..+.++.....+ .+.. ..........|+..+. ..+..++..+++.+++++|..+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~---~l~d----~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~v 648 (895)
T KOG2076|consen 576 GTTSKRYSELLKQIIRAREKATDDNVMEK---ALSD----GTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSV 648 (895)
T ss_pred cccccccchhHHHHHHHHhccCchHHhhh---cccc----hhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 1111111111111000000 0000 0111112222332222 2345688899999999999998
Q ss_pred HHhcCC-----CCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHhC-CC--CCCH-HHHHHHHHHHHhhCChhHHHHHH
Q 004269 500 FCDSKT-----PLGT---PTYNTVLHSLVEAQESHRAMEIFKQMKTC-GI--PPNA-ATYNIMIDCCSIIRCFKSASALV 567 (764)
Q Consensus 500 ~~~~~~-----~~~~---~~~~~li~~~~~~~~~~~A~~l~~~m~~~-g~--~p~~-~t~~~ll~~~~~~g~~~~a~~~~ 567 (764)
...+.. .++. ..-...+.+....+++..|...++.|... +. .|.. ..|+..++...+.++----.+++
T Consensus 649 v~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~ 728 (895)
T KOG2076|consen 649 VFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLI 728 (895)
T ss_pred HHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765421 1121 13345667778889999999999998865 11 1222 23444455555444433333333
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHH----------HcCCHHHHHHH
Q 004269 568 SMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILK-KAC----------EKGRIDVIEFI 636 (764)
Q Consensus 568 ~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-~~~----------~~g~~~~a~~~ 636 (764)
..+......-++..+......+..++.+..|+..+-+.... .||....+.++. ++. ++-.+-.+..+
T Consensus 729 ~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~af 806 (895)
T KOG2076|consen 729 MRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAF 806 (895)
T ss_pred HHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22222211111222222223345567777777776665533 455333332221 111 11112345555
Q ss_pred HHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 637 IEQMHQNKVQ-PDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 637 ~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
+.+..+.... --...++-+-++|-..|-..-|..++++...
T Consensus 807 L~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 807 LKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 5555543211 1234555566788888888888888887643
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-11 Score=127.36 Aligned_cols=472 Identities=14% Similarity=0.049 Sum_probs=253.4
Q ss_pred CCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHH
Q 004269 45 GLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKC 124 (764)
Q Consensus 45 ~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 124 (764)
|+.|. ..++.++|..|+..|+.+.|- +|.-|.-...+.+...|+.++......++.+.+. .|...+
T Consensus 20 gi~Pn--RvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 20 GILPN--RVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred cCCCc--hhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 34444 366777788888888888777 7777777776777777888888777777777664 577788
Q ss_pred HHHHHHHHHccCCHHH---HHHHHHHHhhh---cCCC-CChh-------------hhHHHHHHHhccCCHHHHHHHHHHH
Q 004269 125 YLLMMQALCKGGYLEE---ASNLIYFLGER---YGIY-PILP-------------VYNSFLGACAKLHSMVHANLCLDLM 184 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~---A~~~~~~m~~~---~~~~-~~~~-------------~~~~li~~~~~~g~~~~A~~~~~~m 184 (764)
|+.|..+|...||+.- .++.++.+.+. .|+- |... --...+.-..-.|-++.+++++..+
T Consensus 86 yt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 8888888888887543 33322222211 1110 0000 0112222233334444445544444
Q ss_pred hhcC-CCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhc-CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 185 DSRM-VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 185 ~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
+... ..|..+ .++-+.. +..-.+++...+... ..+++.+|..++..-...|+.+.|..++..|.+.|+.-..
T Consensus 166 Pvsa~~~p~~v----fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 166 PVSAWNAPFQV----FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred CcccccchHHH----HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 3221 111111 1222221 223444555555443 2699999999999999999999999999999998876655
Q ss_pred hhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 004269 263 YINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342 (764)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 342 (764)
.-|-.|+-+ .++...+..+++-|.+.|+.|+..|+..-+..+.+.|
T Consensus 240 -------------------------------HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 240 -------------------------------HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred -------------------------------ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 233344433 7888888999999999999999999987777666644
Q ss_pred ChhHHHH-----------HHHHHH-------------------------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004269 343 GLRNGME-----------VLKIMQ-------------------------QNNLKPQDSTIATLSVECSKALELDLAEALL 386 (764)
Q Consensus 343 ~~~~a~~-----------~~~~~~-------------------------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 386 (764)
....+.. ++..|. =.|+.....++... .-....|.-+..+++-
T Consensus 286 ~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlv 364 (1088)
T KOG4318|consen 286 QTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLV 364 (1088)
T ss_pred hhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHH
Confidence 3211111 011110 01222122222111 1112245555555555
Q ss_pred HHHhhCC------CCccHHHHHHHHHhcCCHHHHHHH------------------HHHHhccCCCCHHHHH-------HH
Q 004269 387 DQISRCT------NPKPFSAFLAACDTMDKPERAIKI------------------FAKMRQKLRPDIRTYE-------LL 435 (764)
Q Consensus 387 ~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~l------------------~~~m~~~~~p~~~t~~-------~l 435 (764)
..+.... ++..|..++.-|.+.-+..-.... ..+......|+..--. -+
T Consensus 365 g~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~El 444 (1088)
T KOG4318|consen 365 GQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTEL 444 (1088)
T ss_pred hhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHH
Confidence 5544321 333444444444332111100000 0000001222221110 00
Q ss_pred HHHhcCCCC-c----hhhchhhhhhhhH---HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCC-
Q 004269 436 FSLFGNVNA-P----YEEGNMFSQVDSA---KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP- 506 (764)
Q Consensus 436 l~~~~~~~~-~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 506 (764)
.+..-.... . +.+...+-.+-.. .++....+.....-+ ...|..|++-++..+..++|..+.++...+
T Consensus 445 er~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d 521 (1088)
T KOG4318|consen 445 ERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRD 521 (1088)
T ss_pred hcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccc
Confidence 000000000 0 0000000000000 111111111111111 145778899999999999999988776322
Q ss_pred ----CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhhCChhHHHHHHHHHHHCC
Q 004269 507 ----LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI-PPN-AATYNIMIDCCSIIRCFKSASALVSMMVRDG 574 (764)
Q Consensus 507 ----~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~-~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 574 (764)
.|..-+..+.+.+.+.+...++..++.+|.+.-. .|+ ..++-.+++..+..|+.+...++++-+...|
T Consensus 522 ~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslg 595 (1088)
T KOG4318|consen 522 ESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLG 595 (1088)
T ss_pred hhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhh
Confidence 2445678888999999999999999999987421 222 3455566667777788887777777766654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-09 Score=109.71 Aligned_cols=513 Identities=10% Similarity=0.024 Sum_probs=384.9
Q ss_pred hCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHH
Q 004269 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL 144 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 144 (764)
..+...=.+++++..+.- |+.+- |-++.....+.+.|+-++++..+. ++.+...| .+|++..-++.|.++
T Consensus 359 E~~~~~K~RVlRKALe~i--P~sv~---LWKaAVelE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkv 428 (913)
T KOG0495|consen 359 ESDTKNKKRVLRKALEHI--PRSVR---LWKAAVELEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKV 428 (913)
T ss_pred hhHHHHHHHHHHHHHHhC--CchHH---HHHHHHhccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHH
Confidence 344455566777777653 33332 334444556777799999998886 34444444 466777788999999
Q ss_pred HHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHH----HhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHH
Q 004269 145 IYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDL----MDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 145 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 220 (764)
++...+ .++-+..+|.+-...--.+|+.+...+++++ +...|+..+...|..=...|-..|..-.+..+....+
T Consensus 429 LNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avi 506 (913)
T KOG0495|consen 429 LNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVI 506 (913)
T ss_pred HHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHH
Confidence 999865 5667777887777777788999999988765 4556888888888888888888888888888888777
Q ss_pred h-c--CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHH
Q 004269 221 K-H--YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFS 297 (764)
Q Consensus 221 ~-~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (764)
. + ...-..+|+.-...|.+.+.++-|..+|....+ +.|.. ...|.
T Consensus 507 gigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq--vfp~k------------------------------~slWl 554 (913)
T KOG0495|consen 507 GIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ--VFPCK------------------------------KSLWL 554 (913)
T ss_pred hhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh--hccch------------------------------hHHHH
Confidence 5 3 233456888888999999999999999999988 66654 25888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004269 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH-TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA 376 (764)
Q Consensus 298 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 376 (764)
..+..--..|..+....+|++.... .|-.. .|-....-.-..|+...|..++....+.+.. +...+-+-+..-...
T Consensus 555 ra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en 631 (913)
T KOG0495|consen 555 RAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFEN 631 (913)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhcc
Confidence 8887777889999999999999876 34444 3444445666789999999999999988766 778888889999999
Q ss_pred CCHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhh
Q 004269 377 LELDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQV 455 (764)
Q Consensus 377 g~~~~a~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~ 455 (764)
.+++.|..+|.+..... +...|.--+..---.++.++|++++++..+ .-|+..-+-.++ |++++++
T Consensus 632 ~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk-~fp~f~Kl~lml------------GQi~e~~ 698 (913)
T KOG0495|consen 632 DELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK-SFPDFHKLWLML------------GQIEEQM 698 (913)
T ss_pred ccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH-hCCchHHHHHHH------------hHHHHHH
Confidence 99999999999988765 777887777777778999999999988776 456665554443 2333333
Q ss_pred hhHHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHhcCcHHHHHHHHHhc--CCCCChhhHHHHHHHHHHcCChHHHHH
Q 004269 456 DSAKRINAIEMDMARNN---IQHSHISMKNLLKALGAEGMIRELIQYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAME 530 (764)
Q Consensus 456 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~ 530 (764)
...+.... ....| ++.....|-.|...=-+.|.+..|..+|+.. ..+.+...|-..|..-.+.|+.+.|..
T Consensus 699 ~~ie~aR~----aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 699 ENIEMARE----AYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHH----HHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHH
Confidence 33333222 22233 3445677888888888999999999999874 456678899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004269 531 IFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGI 610 (764)
Q Consensus 531 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 610 (764)
+..+..+. ++-+...|..-|....+.++-..... .+.+ ..-|+...-++...|-...+++.|.+.|.+....+
T Consensus 775 lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~D---ALkk--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d- 847 (913)
T KOG0495|consen 775 LMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSID---ALKK--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD- 847 (913)
T ss_pred HHHHHHHh-CCccchhHHHHHHhccCcccchHHHH---HHHh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-
Confidence 99887765 34455677777777666666444333 3333 35677777788888888899999999999998543
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004269 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 611 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
+.+-.+|.-+...+.++|.-+.-.+++..... ..|...
T Consensus 848 ~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG 885 (913)
T KOG0495|consen 848 PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHG 885 (913)
T ss_pred CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCC
Confidence 23446888899999999999998999998874 556544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-08 Score=100.03 Aligned_cols=458 Identities=10% Similarity=0.111 Sum_probs=251.3
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh-hhhHHHHHHHhccCCHHHHH
Q 004269 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL-PVYNSFLGACAKLHSMVHAN 178 (764)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~ 178 (764)
.++...|+.+|++.+.-+ ..+...|-..+.+=.++..+..|..++++.... -|.+ ..|-.-+..--..|++..|.
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~---lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---cchHHHHHHHHHHHHHHhcccHHHH
Confidence 345556666666666554 334445555555555666666666666655421 1222 23333333333456666666
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 004269 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM 258 (764)
Q Consensus 179 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 258 (764)
.+|+.-.+ ..|+...|.+.|+.=.+.+.++.|..+++..+- ..|++..|-.....-.++|....|..+|+...+.
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~-- 236 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF-- 236 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--
Confidence 66666555 356666666666666666666666666666554 2366666666666666666666666666665541
Q ss_pred cCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc---cHHHHH
Q 004269 259 MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH---TYDGFI 335 (764)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll 335 (764)
-.++... ...|++...--.++..++.|.-+|.-.... -|... .|....
T Consensus 237 ~~~d~~~---------------------------e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~ 287 (677)
T KOG1915|consen 237 LGDDEEA---------------------------EILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYT 287 (677)
T ss_pred hhhHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHH
Confidence 1111000 123333333333444555555555554443 12211 111111
Q ss_pred HHHHhcCChhHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Q 004269 336 RAIVSDRGLRNGMEV--------LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDT 407 (764)
Q Consensus 336 ~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~ 407 (764)
..=-+-|+.....+. ++.+.+.+.- |-.+|--.+..-..
T Consensus 288 ~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~---------------------------------nYDsWfdylrL~e~ 334 (677)
T KOG1915|consen 288 AFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY---------------------------------NYDSWFDYLRLEES 334 (677)
T ss_pred HHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC---------------------------------CchHHHHHHHHHHh
Confidence 111122222211111 1222222211 22333333333333
Q ss_pred cCCHHHHHHHHHHHhccCCCCHH-------HHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHH
Q 004269 408 MDKPERAIKIFAKMRQKLRPDIR-------TYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480 (764)
Q Consensus 408 ~~~~~~a~~l~~~m~~~~~p~~~-------t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (764)
.|+.+...++|+....+++|-.. .|..+=-+|-. + -......+..+++....+ -++....++
T Consensus 335 ~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalye-----E-----le~ed~ertr~vyq~~l~-lIPHkkFtF 403 (677)
T KOG1915|consen 335 VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYE-----E-----LEAEDVERTRQVYQACLD-LIPHKKFTF 403 (677)
T ss_pred cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHH-----H-----HHhhhHHHHHHHHHHHHh-hcCcccchH
Confidence 44444444444444443333210 01111000000 0 001122233333333333 333444555
Q ss_pred HHHHHHH----HhcCcHHHHHHHHHh-cCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004269 481 KNLLKAL----GAEGMIRELIQYFCD-SKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555 (764)
Q Consensus 481 ~~l~~~~----~~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 555 (764)
..+--+| .++.++..|.+++.. ++..|-..+|-..|..-.+.++++.+..+|++..+-+ +-|..++......=.
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~ 482 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELET 482 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHH
Confidence 5443333 467888999999865 4667888899999999999999999999999999875 336677777777667
Q ss_pred hhCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----HcC-
Q 004269 556 IIRCFKSASALVSMMVRDG-FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC-----EKG- 628 (764)
Q Consensus 556 ~~g~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-----~~g- 628 (764)
..|+.+.|..+|...+... +......|-+.|+.=...|.++.|..+++++++. .+...+|-++..--. +.+
T Consensus 483 ~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~ 560 (677)
T KOG1915|consen 483 SLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDE 560 (677)
T ss_pred HhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhcccccccccc
Confidence 7899999999999998752 3344566777777778899999999999999864 455557766654332 333
Q ss_pred ----------CHHHHHHHHHHHHH
Q 004269 629 ----------RIDVIEFIIEQMHQ 642 (764)
Q Consensus 629 ----------~~~~a~~~~~~m~~ 642 (764)
....|..+|++...
T Consensus 561 ~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 561 DLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred chhhhhcchhHHHHHHHHHHHHHH
Confidence 45678888887654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.9e-11 Score=124.88 Aligned_cols=284 Identities=11% Similarity=0.018 Sum_probs=209.5
Q ss_pred HHhhCCcchHHHHHHhccccCCCCChhc-HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHH--HHHHHHHccCCH
Q 004269 62 ALCRGERSRASHLLLNLGHAHHSLGADD-FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYL--LMMQALCKGGYL 138 (764)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~ 138 (764)
....|+++.|.+......... ..+.. |.....+..+.|+++.|.+.+.++.+. .|+...+. .....+...|++
T Consensus 94 a~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 94 KLAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred HHhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCH
Confidence 334799999998888765543 22233 333345556889999999999999876 45554333 336678889999
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCh-------hhHHHHHHHHHhhcChhH
Q 004269 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE-------VTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 139 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~~~~~~ 211 (764)
+.|...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+.
T Consensus 170 ~~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~ 247 (398)
T PRK10747 170 HAARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEG 247 (398)
T ss_pred HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999997543 445668888999999999999999999999987655322 133444444445556677
Q ss_pred HHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchh
Q 004269 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
..++|+.+.+..+.++.....+...+...|+.+.|.+++++..+. .++.
T Consensus 248 l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~----------------------------- 296 (398)
T PRK10747 248 LKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDE----------------------------- 296 (398)
T ss_pred HHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH-----------------------------
Confidence 777777776667778888889999999999999999999888762 2221
Q ss_pred hhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004269 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH-TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS 370 (764)
Q Consensus 292 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 370 (764)
--.++.+.+..++.+++++..+...+. .|+.. .+..+-..|.+.+++++|.+.|+.+.+. .|+..++..+.
T Consensus 297 ----~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La 368 (398)
T PRK10747 297 ----RLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLA 368 (398)
T ss_pred ----HHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 112345555668889999999888876 45544 4667778888999999999999998875 57778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHh
Q 004269 371 VECSKALELDLAEALLDQIS 390 (764)
Q Consensus 371 ~~~~~~g~~~~a~~~~~~~~ 390 (764)
..+.+.|+.++|.+.+++-.
T Consensus 369 ~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 369 DALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 88888888888888877653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-08 Score=98.96 Aligned_cols=437 Identities=13% Similarity=0.127 Sum_probs=293.7
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccccc
Q 004269 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSS 275 (764)
Q Consensus 196 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (764)
|.--.+.=..++++..|..+|+..+.....+...|...+.+-.++..+..|..+++.... +-|..
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lPRV------------- 140 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRV------------- 140 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchH-------------
Confidence 333333344567777888888888877777777888888888888888888888888776 22221
Q ss_pred ccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 004269 276 RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 355 (764)
-..|--.+..--..|++..|.++|++-.+. .|+..+|.+.|+.=.+-+.++.|..+++...
T Consensus 141 -----------------dqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV 201 (677)
T KOG1915|consen 141 -----------------DQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFV 201 (677)
T ss_pred -----------------HHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 025555555555668888888888887764 7888888888888888888888888888876
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-C----CccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--
Q 004269 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-N----PKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPD-- 428 (764)
Q Consensus 356 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~-- 428 (764)
- +.|++.++-.....=.++|.+..|..+|....+.- + ...+.++..-=.++..++.|.-+|+-....++.+
T Consensus 202 ~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra 279 (677)
T KOG1915|consen 202 L--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA 279 (677)
T ss_pred e--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH
Confidence 5 34778888777777788888888888887766532 2 2233343333345666777777777665522222
Q ss_pred HHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc--CCC
Q 004269 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS--KTP 506 (764)
Q Consensus 429 ~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~ 506 (764)
...|.....-=-+.|+...- +..-.+++-.++...+.+++. |--+|--.++.-...|+.+...++++.. ..+
T Consensus 280 eeL~k~~~~fEKqfGd~~gI----Ed~Iv~KRk~qYE~~v~~np~--nYDsWfdylrL~e~~g~~~~Ire~yErAIanvp 353 (677)
T KOG1915|consen 280 EELYKKYTAFEKQFGDKEGI----EDAIVGKRKFQYEKEVSKNPY--NYDSWFDYLRLEESVGDKDRIRETYERAIANVP 353 (677)
T ss_pred HHHHHHHHHHHHHhcchhhh----HHHHhhhhhhHHHHHHHhCCC--CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Confidence 22232222111111111000 001112222333333444433 4445555666677789999999999875 333
Q ss_pred CCh--hhHHHHHH--------HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hhCChhHHHHHHHHHHH
Q 004269 507 LGT--PTYNTVLH--------SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS----IIRCFKSASALVSMMVR 572 (764)
Q Consensus 507 ~~~--~~~~~li~--------~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~----~~g~~~~a~~~~~~~~~ 572 (764)
|-. ..|.-.|. .-....+.+.+.++|+...+. ++-...||.-+--.|+ +..++..|.+++...+
T Consensus 354 p~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI- 431 (677)
T KOG1915|consen 354 PASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI- 431 (677)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh-
Confidence 421 12322222 223468899999999999883 4445577776655555 4578899999998776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHH
Q 004269 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK-VQPDPST 651 (764)
Q Consensus 573 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~ 651 (764)
|..|...+|...|..=.+.+.+|...+++++.++-+ +-|..+|......=...|+.+.|..+|+-.++.. +......
T Consensus 432 -G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 432 -GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred -ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH
Confidence 456888999999999999999999999999999754 4478899988888888999999999999998632 2223344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh
Q 004269 652 CHFVFSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 652 ~~~ll~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
|...|..=...|.++.|..+++++..+
T Consensus 510 wkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 510 WKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 555555556799999999999988664
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.4e-10 Score=107.40 Aligned_cols=426 Identities=10% Similarity=0.013 Sum_probs=244.9
Q ss_pred hcChhHHHHHHHHHHhc--CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccC
Q 004269 206 QKNLSAVHEIWEDYIKH--YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPL 283 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (764)
.....+|+..|+.+++. ++.....-..+.+.+.+...+.+|+++++..... .|...
T Consensus 214 ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsin-------------------- 271 (840)
T KOG2003|consen 214 NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSIN-------------------- 271 (840)
T ss_pred hHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccc--------------------
Confidence 34455666666666653 3333333344555666777777777777766542 22110
Q ss_pred CccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 004269 284 NALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQD 363 (764)
Q Consensus 284 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 363 (764)
++.-.-..+.+--.+.+.|+++.|+..|+...+. .|+..+--.|+-.+...|+-++..+.|..|+.....||.
T Consensus 272 -----k~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dd 344 (840)
T KOG2003|consen 272 -----KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDD 344 (840)
T ss_pred -----hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCc
Confidence 0000023444444566777777777777776664 466655444444555567777777777777654332222
Q ss_pred H------------HHHH-----HHHHHHhcC--CHHHHHHHHHHHhhCC---CC---ccHH------------------H
Q 004269 364 S------------TIAT-----LSVECSKAL--ELDLAEALLDQISRCT---NP---KPFS------------------A 400 (764)
Q Consensus 364 ~------------~~~~-----li~~~~~~g--~~~~a~~~~~~~~~~~---~~---~~~~------------------~ 400 (764)
. ..+. .+.-..+.. +.+++.-.--.+.... +- .-|. .
T Consensus 345 dkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ 424 (840)
T KOG2003|consen 345 DKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEIN 424 (840)
T ss_pred ccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhh
Confidence 2 2221 111111111 1111111111111100 00 0010 0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHH
Q 004269 401 FLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISM 480 (764)
Q Consensus 401 li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (764)
-...|.++|+++.|+++++-..+ -|..|-+.....++.+ .+...++-|... ..+...... --.-+....
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~---kdnk~~saaa~nl~~l-~flqggk~~~~a------qqyad~aln-~dryn~~a~ 493 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEK---KDNKTASAAANNLCAL-RFLQGGKDFADA------QQYADIALN-IDRYNAAAL 493 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHh---ccchhhHHHhhhhHHH-HHHhcccchhHH------HHHHHHHhc-ccccCHHHh
Confidence 12347899999999999988766 1222222111111100 000111111110 000000000 000111111
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhcCCCCChh----hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004269 481 KNLLKALGAEGMIRELIQYFCDSKTPLGTP----TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556 (764)
Q Consensus 481 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 556 (764)
+.--..-...|+++.|.+.+.+.. ..|.. .||. .-.+-..|+.++|++.|-++..- +..+..+...+.+-|..
T Consensus 494 ~nkgn~~f~ngd~dka~~~ykeal-~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 494 TNKGNIAFANGDLDKAAEFYKEAL-NNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYEL 570 (840)
T ss_pred hcCCceeeecCcHHHHHHHHHHHH-cCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH
Confidence 111122335689999999998762 22322 2332 23456779999999999876542 23466677778888888
Q ss_pred hCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 004269 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFI 636 (764)
Q Consensus 557 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 636 (764)
..+..+|.+++-+.... ++.|+...+.|.+.|-+.|+-..|.+..-.--. -++-+..+..-|..-|....-+++++..
T Consensus 571 led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred hhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999998777664 566789999999999999999999987654331 2455777888888888888889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHh
Q 004269 637 IEQMHQNKVQPDPSTCHFVFS-GYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 637 ~~~m~~~~~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~ 678 (764)
|++.. -+.|+..-|..++. ++.+.|.+.+|.++++.+.++
T Consensus 649 ~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 649 FEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 99876 48999999999887 556789999999999988653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-13 Score=134.13 Aligned_cols=264 Identities=13% Similarity=0.011 Sum_probs=114.3
Q ss_pred HHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHH
Q 004269 12 LIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFF 91 (764)
Q Consensus 12 ~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 91 (764)
.++..+...|++++|+ .++.+. .....|......|.....-....++++.|+..++++...+ +-++..+.
T Consensus 13 ~~A~~~~~~~~~~~Al-~~L~~~--------~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~ 82 (280)
T PF13429_consen 13 RLARLLYQRGDYEKAL-EVLKKA--------AQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYE 82 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccc-cccccc--------cccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 5688899999999999 555332 1222122223334333334456889999999999999876 34666788
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhcc
Q 004269 92 HILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171 (764)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 171 (764)
.++.. ...++++.|.++++...+.. +++..+..++..+...|+++++..+++.+.+....+++...|..+...+.+.
T Consensus 83 ~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~ 159 (280)
T PF13429_consen 83 RLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL 159 (280)
T ss_dssp --------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC
T ss_pred ccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 88877 68899999999998877653 5667778888999999999999999999865444566778899999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHH
Q 004269 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQ 251 (764)
Q Consensus 172 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 251 (764)
|+.++|++.|+...+..+. |......++..+...|+.+++.++++...+..+.|+..+..+..+|...|+.++|..+|+
T Consensus 160 G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 160 GDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp CHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence 9999999999999986332 577788899999999999999999999988778888889999999999999999999999
Q ss_pred HHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 252 HMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
+..+ ..|+++ .....+..++.+.|+.++|.++..+...
T Consensus 239 ~~~~--~~p~d~------------------------------~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 239 KALK--LNPDDP------------------------------LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHH--HSTT-H------------------------------HHHHHHHHHHT-----------------
T ss_pred cccc--cccccc------------------------------cccccccccccccccccccccccccccc
Confidence 9887 555542 4667888999999999999999887653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-10 Score=118.12 Aligned_cols=291 Identities=12% Similarity=-0.036 Sum_probs=185.3
Q ss_pred HHhhCCcchHHHHHHhccccCCCCChhc-HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHH
Q 004269 62 ALCRGERSRASHLLLNLGHAHHSLGADD-FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEE 140 (764)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 140 (764)
....|+++.|.+.+.+..+.. |++.. +.....+..+.|+++.|.+.+.+..+..-.+.....-.....+...|+++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 445889999999888876654 44333 344456667778999999999888765312222233345777788899999
Q ss_pred HHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH---HhhcChhHHHHHHH
Q 004269 141 ASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA---VWQKNLSAVHEIWE 217 (764)
Q Consensus 141 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~~~~~~a~~~~~ 217 (764)
|...++.+.+.. |-+...+..+...+.+.|++++|.+.+..+.+.++.+.......-..++ ...+..+.+.+.+.
T Consensus 172 Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999887643 3355577888888899999999999999888876543222211111111 22222222222333
Q ss_pred HHHh----cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhh
Q 004269 218 DYIK----HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR 293 (764)
Q Consensus 218 ~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (764)
.+.+ ..+.++..+..+...+...|+.+.|.+++++..+ ..|+...
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~----------------------------- 298 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRA----------------------------- 298 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCccc-----------------------------
Confidence 3333 2335777888888888888888888888888877 3343310
Q ss_pred hh-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 004269 294 WS-FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH---TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369 (764)
Q Consensus 294 ~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 369 (764)
.. ...........++.+.+.+.++...+. .|+.. ...++-..+.+.|++++|.+.|+........|+...+..+
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 01 111222223346677777777776654 44444 3446667777888888888888854444456677777777
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 004269 370 SVECSKALELDLAEALLDQI 389 (764)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~~ 389 (764)
...+.+.|+.++|.+++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 77777777777777777664
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=130.30 Aligned_cols=259 Identities=12% Similarity=0.041 Sum_probs=92.4
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHH-HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFH-ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
...+...|++++|++++........+|+...|-. +...+-..++.+.|.+.++++...+. -++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 5556778888888888865444332234434433 44455566888888888888887753 356667777766 68888
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHhhcChhHHHHHH
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM-VGKNEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
+++|.++++...++. ++...+..++..+.+.++++++..+++...... ..++...|..+...+.+.|+.++|.+.+
T Consensus 93 ~~~A~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYERD---GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc---cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888887665442 455567777788888888888888888876532 2345666667777777778888888888
Q ss_pred HHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhH
Q 004269 217 EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 217 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
++.++..|.|....+.++..+...|+.+++..+++...+.. |+++ ..|
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~------------------------------~~~ 217 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDP------------------------------DLW 217 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSC------------------------------CHC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHH------------------------------HHH
Confidence 88777777777777777777777777777777777766633 2110 356
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 004269 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 297 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 355 (764)
..+..++...|++++|+..|++..... +.|..+...+..++...|+.++|.++.....
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 677777777777777777777776642 2255566666667777777777777666543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-09 Score=112.76 Aligned_cols=285 Identities=11% Similarity=0.011 Sum_probs=167.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCccc-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004269 306 TQNSGLAEQLMLQMQSLGLQPSSHT-YDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384 (764)
Q Consensus 306 ~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 384 (764)
.|+++.|.+.+....+.. +++.. |.....+....|+++.+...+.++.+....+...........+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999998888766542 12222 333344557899999999999999875433222222244678899999999999
Q ss_pred HHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHH
Q 004269 385 LLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461 (764)
Q Consensus 385 ~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (764)
.++.+.+.. ++.....+...|.+.|++++|..++..+.+ +..++. ....+-.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~------------------------ 229 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ------------------------ 229 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH------------------------
Confidence 999988764 666788889999999999999999999988 433211 1111000
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 004269 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP 541 (764)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~ 541 (764)
. .|..++.......+.+...++++.+.+. .+
T Consensus 230 ----------------~--------------------------------a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~ 260 (398)
T PRK10747 230 ----------------Q--------------------------------AWIGLMDQAMADQGSEGLKRWWKNQSRK-TR 260 (398)
T ss_pred ----------------H--------------------------------HHHHHHHHHHHhcCHHHHHHHHHhCCHH-Hh
Confidence 0 0111111111112223333333333221 12
Q ss_pred CCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004269 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621 (764)
Q Consensus 542 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 621 (764)
.+......+..++...|+.++|..++++..+. .|+.... ++.+....++.+++.+..+...+.. +-|+..+..+.
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lg 335 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLG 335 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 34445555555556666666666666555552 2333211 2233334466666666666665431 23444555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004269 622 KKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673 (764)
Q Consensus 622 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 673 (764)
..|.+.+++++|.+.|+.+.+ ..|+..++..+..++.+.|+.++|.++++
T Consensus 336 rl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 336 QLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666666666666664 45666666666666666666666666655
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.8e-10 Score=102.66 Aligned_cols=275 Identities=10% Similarity=0.032 Sum_probs=183.1
Q ss_pred HHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcC-cccc--HHHHHHHHHHHHccCC
Q 004269 61 DALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE-IGLN--NKCYLLMMQALCKGGY 137 (764)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~ 137 (764)
.+.-++++++|+++|-+|.+.+ +-+..+-.+|.+.+.+.|..+.|++++..+.++. .+-+ ......|..-|...|-
T Consensus 44 NfLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 44 NFLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred HHHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Confidence 4556788999999999998754 3444556778888888999999999999988763 2222 2344567778888999
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChh----hHHHHHHHHHhhcChhHHH
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV----TYTELLKLAVWQKNLSAVH 213 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~ 213 (764)
+|.|+.+|..+.+.... -......|+..|-...++++|+++-+.+.+.+..+..+ -|..+-..+....+++.|.
T Consensus 123 ~DRAE~~f~~L~de~ef--a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 123 LDRAEDIFNQLVDEGEF--AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhHHHHHHHHHhcchhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 99999999988653222 23467789999999999999999999888876555443 3444444555566777777
Q ss_pred HHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhh
Q 004269 214 EIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR 293 (764)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (764)
.++.+..+..+.++-+--.+.+.+...|+++.|.+.++.+.+.+..-- .
T Consensus 201 ~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl-------------------------------~ 249 (389)
T COG2956 201 ELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL-------------------------------S 249 (389)
T ss_pred HHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH-------------------------------H
Confidence 777777766666666666677777777777777777777766322111 1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004269 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373 (764)
Q Consensus 294 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 373 (764)
.+...|..+|.+.|+.++....+..+.+.. +....-..+-..-......+.|..++.+-... +|+...+..+|+..
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 456667777777777777777777766642 23333333333333334445555555444433 35555555555543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-07 Score=95.92 Aligned_cols=261 Identities=13% Similarity=0.071 Sum_probs=145.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 004269 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAV 204 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 204 (764)
+..++..| ..+++...+++.+.+.++.+-.++ +.....-.+...|+.++|......-.+..+. +.+.|..+.-.+.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHge--slAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKKFPEHGE--SLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHhCCccch--hHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHh
Confidence 33344433 345566666666666554443333 2222222334456666666665555543332 4555655555555
Q ss_pred hhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCC
Q 004269 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (764)
...++++|...|....+-.+.|...+.-+--.-+..++++.....-....+ ..|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq--l~~~~---------------------- 142 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ--LRPSQ---------------------- 142 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--hhhhh----------------------
Confidence 566667777777666666666666666666666666677666666666655 33333
Q ss_pred ccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCcccHHHHHH------HHHhcCChhHHHHHHHHHHHC
Q 004269 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIR------AIVSDRGLRNGMEVLKIMQQN 357 (764)
Q Consensus 285 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~ 357 (764)
...|..+..++.-.|++..|..++++..+.. -.|+...|.-... ...+.|.++.|.+-+..-...
T Consensus 143 --------ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~ 214 (700)
T KOG1156|consen 143 --------RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ 214 (700)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH
Confidence 2477777777777788888887777776643 2355544433222 233556666666655544332
Q ss_pred CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCccHHH-HHHHHHhcCCHHHHH-HHHHHHhc
Q 004269 358 NLKPQDST-IATLSVECSKALELDLAEALLDQISRCT-NPKPFSA-FLAACDTMDKPERAI-KIFAKMRQ 423 (764)
Q Consensus 358 ~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~-li~~~~~~~~~~~a~-~l~~~m~~ 423 (764)
+. |... -..-...+.+.+++++|..++..+..+. |...|.- +..++.+-.+..+++ .+|....+
T Consensus 215 -i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 215 -IV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred -HH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 11 2222 2345566777788888888888877664 4444443 333343333333343 55555443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.5e-08 Score=96.33 Aligned_cols=186 Identities=13% Similarity=0.101 Sum_probs=145.7
Q ss_pred HHHhcCcHHHHHHHHHhc-C-CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHH
Q 004269 486 ALGAEGMIRELIQYFCDS-K-TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563 (764)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 563 (764)
-|.-.++.+.|...|+.. . .+.....|+-|.+-|....+...|++-++..++-+ +.|-..|-.+-++|...+...-|
T Consensus 339 YYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 339 YYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHH
Confidence 344556667777777654 2 23345689999999999999999999999998864 44777888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 004269 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ- 642 (764)
Q Consensus 564 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 642 (764)
+-+|++..+.. +-|...|.+|.++|.+.+++++|++.|.+....| ..+...+..|...|-+.++.++|...+++.++
T Consensus 418 LyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 418 LYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999863 4578999999999999999999999999998765 44668899999999999999999999888765
Q ss_pred ---CCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHH
Q 004269 643 ---NKVQPDPST--CHFVFSGYVNCGFHNSAMEALQV 674 (764)
Q Consensus 643 ---~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~ 674 (764)
.|..-+... ..-|..-+.+.+++++|..+...
T Consensus 496 ~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 496 SELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 233322221 12234467788999998776653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.7e-10 Score=117.56 Aligned_cols=294 Identities=8% Similarity=-0.091 Sum_probs=209.3
Q ss_pred HhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChh--cHHHHH
Q 004269 17 FCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGAD--DFFHIL 94 (764)
Q Consensus 17 ~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll 94 (764)
-..+|+++.|. +......+..|+|..+.+ .........|+++.|.+.+....+.. |+.. .-....
T Consensus 94 a~~~g~~~~A~----------~~l~~~~~~~~~~~~~~l-laA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a 160 (409)
T TIGR00540 94 KLAEGDYAKAE----------KLIAKNADHAAEPVLNLI-KAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIART 160 (409)
T ss_pred HHhCCCHHHHH----------HHHHHHhhcCCCCHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHH
Confidence 34588999998 333334455566544444 44566778899999999999987654 4443 333346
Q ss_pred HHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhH-H---HHHHHhc
Q 004269 95 NYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN-S---FLGACAK 170 (764)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-~---li~~~~~ 170 (764)
..+...|+++.|.+.++.+.+.. +-++.++..+...|...|++++|.++++.+.+. +.. +...+. . ...++..
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~-~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLF-DDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHHHHHH
Confidence 77788999999999999999986 557788999999999999999999999999754 322 222221 1 1111122
Q ss_pred cCCHHHHHHHHHHHhhcCCC---CChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHH--hhccCCHHH
Q 004269 171 LHSMVHANLCLDLMDSRMVG---KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS--FTRLRDLKS 245 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~ 245 (764)
.+..++..+.+..+.+..+. .+...+..+...+...|+.++|.+.++...+..+.+......++.. ....++.+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 33333334455555443221 3778888888999999999999999999998766665322112222 234578888
Q ss_pred HHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 004269 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325 (764)
Q Consensus 246 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 325 (764)
+.+.++...+ ..|+++.. ....++...+.+.|++++|.+.|+........
T Consensus 318 ~~~~~e~~lk--~~p~~~~~----------------------------~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~ 367 (409)
T TIGR00540 318 LEKLIEKQAK--NVDDKPKC----------------------------CINRALGQLLMKHGEFIEAADAFKNVAACKEQ 367 (409)
T ss_pred HHHHHHHHHH--hCCCChhH----------------------------HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC
Confidence 9999988887 55655100 25567889999999999999999954444457
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 326 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
||...+..+...+.+.|+.++|.+++++...
T Consensus 368 p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 368 LDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8999899999999999999999999998643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-09 Score=102.15 Aligned_cols=286 Identities=14% Similarity=0.017 Sum_probs=211.6
Q ss_pred hhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHH
Q 004269 64 CRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASN 143 (764)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 143 (764)
..|+|..|.++..+-.+.+ ......|..-.++.-+.||.+.+-.++.+..+.--.++...+-+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4799999999998877665 233345666667777889999999999999887446677777788888899999999998
Q ss_pred HHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChh-------hHHHHHHHHHhhcChhHHHHHH
Q 004269 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV-------TYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 144 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
-+++..+.. +.+.........+|.+.|++.....++..|.+.|.--++. +|..+++-....++.+.-...|
T Consensus 175 ~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 175 NVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 888886533 3355678888999999999999999999999988765554 6777777777777777777778
Q ss_pred HHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhH
Q 004269 217 EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 217 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
+........++..-.+++.-+..+|+.++|.++..+..+++.+|..
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---------------------------------- 298 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---------------------------------- 298 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----------------------------------
Confidence 7777777777777788888888888888888888888876655532
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004269 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA 376 (764)
Q Consensus 297 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 376 (764)
...-.+.+-++...-++..++-.+.. .-++-.+.+|-..|.+.+.|.+|...|+...+ ..|+..+|+-+.+.+.+.
T Consensus 299 -~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 299 -CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQL 374 (400)
T ss_pred -HHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHc
Confidence 12234455666666666666655432 11335566677777788888888888886655 356777777777777777
Q ss_pred CCHHHHHHHHHHHh
Q 004269 377 LELDLAEALLDQIS 390 (764)
Q Consensus 377 g~~~~a~~~~~~~~ 390 (764)
|+.++|.+++++..
T Consensus 375 g~~~~A~~~r~e~L 388 (400)
T COG3071 375 GEPEEAEQVRREAL 388 (400)
T ss_pred CChHHHHHHHHHHH
Confidence 77777777776643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.9e-10 Score=114.31 Aligned_cols=283 Identities=11% Similarity=-0.045 Sum_probs=132.4
Q ss_pred hCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcC--ccccHHHHHHHHHHHHccCCH-HHH
Q 004269 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE--IGLNNKCYLLMMQALCKGGYL-EEA 141 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~-~~A 141 (764)
.-++++|+..|.++... +.-+......+.++|...++++.+..+|+.+.+.. ..-+..+|.+.+--+-+.-.. --|
T Consensus 332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 33455566666553332 22333444445555555555666666665555432 111344555444333211000 011
Q ss_pred HHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhhcChhHHHHHHHHHH
Q 004269 142 SNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 142 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 220 (764)
..+.+. +. -...+|-++.+.|.-+++.+.|++.|++..+. .| ...+|+.+-.-+.....+|.|...|...+
T Consensus 411 q~Li~~----~~--~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 411 QDLIDT----DP--NSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHhh----CC--CCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 122221 11 12235555555555555666666655555542 23 44444444444455555555555555555
Q ss_pred hcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHH
Q 004269 221 KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300 (764)
Q Consensus 221 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 300 (764)
.-.+.+-.+|.-+...|.+.++++.|.-.|++..+ +.|.. .+....+.
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~n------------------------------svi~~~~g 530 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSN------------------------------SVILCHIG 530 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccc------------------------------hhHHhhhh
Confidence 54444445555555555555555555555555554 33333 12333344
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004269 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380 (764)
Q Consensus 301 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 380 (764)
..+-+.|+.|+|+++|++......+ |+.+---....+...++.++|+..++++.+.-+. +..++..+...|-+.|+.+
T Consensus 531 ~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 531 RIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccch
Confidence 4455555555555555555543311 2333223333444455555555555555553222 3333444444555555555
Q ss_pred HHHHHHHHHh
Q 004269 381 LAEALLDQIS 390 (764)
Q Consensus 381 ~a~~~~~~~~ 390 (764)
.|..-|.-+.
T Consensus 609 ~Al~~f~~A~ 618 (638)
T KOG1126|consen 609 LALLHFSWAL 618 (638)
T ss_pred HHHHhhHHHh
Confidence 5544444443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.2e-10 Score=114.82 Aligned_cols=282 Identities=8% Similarity=-0.027 Sum_probs=190.7
Q ss_pred ChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHH
Q 004269 102 DPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLC 180 (764)
Q Consensus 102 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 180 (764)
+.++|...|+..... +.-+.++...+..+|...+++++|+++|+.+.+..+... +..+|.+.+.-+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 345677777773333 344556777778888888888888888888866544332 344677666544332 22222
Q ss_pred HH-HHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhcc
Q 004269 181 LD-LMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM 259 (764)
Q Consensus 181 ~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 259 (764)
+. .+.+. -+-.+.||.++-.+|.-+++.+.|.+.|++.++-.+....+|+.+.+-+.....+|.|...|+.... +.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 21 11121 1235678888888888888888888888888777777778888888888888888888888887765 33
Q ss_pred CcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 004269 260 GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339 (764)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 339 (764)
|..+ .+|--+.-.|.+.++++.|.-.|+...+.+. -+.+....+...+-
T Consensus 486 ~rhY------------------------------nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~ 534 (638)
T KOG1126|consen 486 PRHY------------------------------NAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQH 534 (638)
T ss_pred chhh------------------------------HHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHH
Confidence 3321 3566667778888888888888888776542 24455555666677
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHH
Q 004269 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKI 417 (764)
Q Consensus 340 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l 417 (764)
+.|+.++|+++++++...+.+ |+-.--.-+..+...++.++|...+++++... +...+..+...|.+.|+.+.|+.-
T Consensus 535 ~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 535 QLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred HhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHh
Confidence 778888888888888776655 33333334445566778888888888887653 566677778888888888888877
Q ss_pred HHHHhc
Q 004269 418 FAKMRQ 423 (764)
Q Consensus 418 ~~~m~~ 423 (764)
|.-+..
T Consensus 614 f~~A~~ 619 (638)
T KOG1126|consen 614 FSWALD 619 (638)
T ss_pred hHHHhc
Confidence 777766
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.6e-09 Score=95.58 Aligned_cols=224 Identities=9% Similarity=0.063 Sum_probs=136.8
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHH
Q 004269 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS---TIATLSVECSKALELDL 381 (764)
Q Consensus 305 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~ 381 (764)
-+++.++|.++|-+|.+.. +-+..+--+|-+.|.+.|..+.|.+++..+.++.--+... ....|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 4688999999999999742 1123345567788889999999999999998753221211 23467778999999999
Q ss_pred HHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhH
Q 004269 382 AEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458 (764)
Q Consensus 382 a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 458 (764)
|+.+|..+.+.+ -...--.|+..|-...++++|+++-+++.. +-.+. +.-|.
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~----~~eIA--------------------- 180 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY----RVEIA--------------------- 180 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc----hhHHH---------------------
Confidence 999999999864 344566789999999999999999888876 32222 11111
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc-CCCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 004269 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-KTPLG-TPTYNTVLHSLVEAQESHRAMEIFKQMK 536 (764)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~li~~~~~~~~~~~A~~l~~~m~ 536 (764)
..|..|...+.-..+++.|...+.+. ...|. +..--.+...+...|+++.|.+.++...
T Consensus 181 -------------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 181 -------------------QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred -------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 11223334444444555555555442 11222 2222223344455555555555555555
Q ss_pred hCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHC
Q 004269 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD 573 (764)
Q Consensus 537 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 573 (764)
+.+..--..+...|..+|.+.|+.+++..++..+.+.
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 5543333334445555555555555555555555443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.8e-12 Score=86.56 Aligned_cols=50 Identities=36% Similarity=0.574 Sum_probs=41.8
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004269 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI 556 (764)
Q Consensus 507 ~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 556 (764)
||+++||++|++|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-07 Score=88.46 Aligned_cols=463 Identities=10% Similarity=0.041 Sum_probs=228.4
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
+..+..+.++..|+.+++.-...+-.-...+-..+..++...|++++|...+.-+.+.+ .++...+-.|.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 56677788888888887766544322222222333445556788888888888777654 44445555555555556778
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHH
Q 004269 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218 (764)
Q Consensus 139 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 218 (764)
.+|..+-....+ +...-..|...--+.++-++-...-+.+.+. ..--.+|.+.....-.+++|.+++..
T Consensus 108 ~eA~~~~~ka~k------~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 108 IEAKSIAEKAPK------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHhhCCC------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 888777654431 2223334444445556665555544444331 12222333333444456666666666
Q ss_pred HHhcCCCCHhhHHHHHH-HhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHH
Q 004269 219 YIKHYSLSIFSLRKFVW-SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFS 297 (764)
Q Consensus 219 ~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (764)
+... .|.-...|..+. +|.+.+-++-+.++++-..+ -.|+.+ ++-|
T Consensus 177 vL~d-n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~--q~pdSt------------------------------iA~N 223 (557)
T KOG3785|consen 177 VLQD-NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR--QFPDST------------------------------IAKN 223 (557)
T ss_pred HHhc-ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH--hCCCcH------------------------------HHHH
Confidence 5542 222222332222 34555555666665555544 233331 1222
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004269 298 DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKAL 377 (764)
Q Consensus 298 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 377 (764)
.......+.=+-..|.+-..++...+-. .| ..+.-+++. ++. --.
T Consensus 224 Lkacn~fRl~ngr~ae~E~k~ladN~~~----~~-~f~~~l~rH----------------NLV--------------vFr 268 (557)
T KOG3785|consen 224 LKACNLFRLINGRTAEDEKKELADNIDQ----EY-PFIEYLCRH----------------NLV--------------VFR 268 (557)
T ss_pred HHHHHHhhhhccchhHHHHHHHHhcccc----cc-hhHHHHHHc----------------CeE--------------EEe
Confidence 2222222211112222222232222100 01 011111111 000 001
Q ss_pred CHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhh
Q 004269 378 ELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDS 457 (764)
Q Consensus 378 ~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 457 (764)
.-+.|.+++-.+.+. -+.+--.|+--|.+++++.+|..+.+++.- ..|-.+..-.+..+-
T Consensus 269 ngEgALqVLP~L~~~-IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P-ttP~EyilKgvv~aa------------------ 328 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKH-IPEARLNLIIYYLNQNDVQEAISLCKDLDP-TTPYEYILKGVVFAA------------------ 328 (557)
T ss_pred CCccHHHhchHHHhh-ChHhhhhheeeecccccHHHHHHHHhhcCC-CChHHHHHHHHHHHH------------------
Confidence 223344444333322 222223344446666666666666555432 233333222222111
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCC----CChhhHHHHHHHHHHcCChHHHHHHHH
Q 004269 458 AKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP----LGTPTYNTVLHSLVEAQESHRAMEIFK 533 (764)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~l~~ 533 (764)
+-.-......+.-|...|.-.+.. ..+.--.++.+.+.-..++++.+..++
T Consensus 329 -------------------------lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yln 383 (557)
T KOG3785|consen 329 -------------------------LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLN 383 (557)
T ss_pred -------------------------hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 001111112233344444332211 122234455556666667777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004269 534 QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD 613 (764)
Q Consensus 534 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 613 (764)
.++.--...|...| .+..+.+..|.+.+|.++|-.+....++-+..-.+.|.++|.++++++-|++++-++. -+.+
T Consensus 384 Si~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e 459 (557)
T KOG3785|consen 384 SIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSE 459 (557)
T ss_pred HHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---Cchh
Confidence 77665333333333 4567778888888888888776554444333333566778888888888888876653 1223
Q ss_pred HHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004269 614 VLL-YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652 (764)
Q Consensus 614 ~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 652 (764)
..+ ...+..-|.+.+.+=-|-+.|+.+.. ..|++..|
T Consensus 460 ~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 460 RFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 333 33445667888887777777877764 55666655
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-08 Score=99.36 Aligned_cols=307 Identities=9% Similarity=-0.063 Sum_probs=217.1
Q ss_pred HHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCc--cccHHHHHHHHHHHHccCCH-
Q 004269 62 ALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI--GLNNKCYLLMMQALCKGGYL- 138 (764)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~- 138 (764)
+-...+.++++.-.+.+...|.+.+...-+....+.-...|++.|..+|+++.+.+. --|..+|+.++-+--.+.++
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 334456677777666666666444443333333333355788888888888887741 12566777766433322221
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHH
Q 004269 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWED 218 (764)
Q Consensus 139 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 218 (764)
--|..+++ -+..+|. |+-.+.+-|+-.++.++|...|++..+.++. ....|+.+..-|....+-..|.+-++.
T Consensus 317 ~LA~~v~~----idKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 317 YLAQNVSN----IDKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHH----hccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 13333332 2333444 6666777788888999999999998886533 556788888889999999999999999
Q ss_pred HHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHH
Q 004269 219 YIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSD 298 (764)
Q Consensus 219 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (764)
.++-.|.|-.+|-.|..+|.-.+.+.-|+-.|++..+ .+|++ ...|.+
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnD------------------------------sRlw~a 437 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPND------------------------------SRLWVA 437 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCc------------------------------hHHHHH
Confidence 9998999999999999999999999999999999888 77776 368999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCCHHH--HHHHHHH
Q 004269 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ----NNLKPQDST--IATLSVE 372 (764)
Q Consensus 299 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~--~~~li~~ 372 (764)
|..+|.+.++.++|++.|......|- .+...+..|.+.+-+.++..+|...|...++ .|...+... ..-|...
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~ 516 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEY 516 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 99999999999999999999888662 2557888899999999999999988887765 233322222 2245566
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 373 CSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 373 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
+.+++++++|.........- .-..++|..+++++++
T Consensus 517 f~k~~~~~~As~Ya~~~~~~---------------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 517 FKKMKDFDEASYYATLVLKG---------------ETECEEAKALLREIRK 552 (559)
T ss_pred HHhhcchHHHHHHHHHHhcC---------------CchHHHHHHHHHHHHH
Confidence 77788888776554433321 3446778888888776
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-06 Score=89.11 Aligned_cols=476 Identities=10% Similarity=-0.006 Sum_probs=287.3
Q ss_pred HHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004269 55 TQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 55 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 134 (764)
+...+..+-..+++...+.+.+.+.+.. +-...+.....-.+...|+.++|........+.+ ..+.+.|..+.-.+-.
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 3334555667788888888888777632 3344444443334445688999999888888765 4567788888877778
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHH
Q 004269 135 GGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214 (764)
Q Consensus 135 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 214 (764)
..++++|++.|.....-. +.|...|.-+--.-++.|+++.....-....+..+ -....|....-++.-.|+...|..
T Consensus 88 dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999886422 44666777776666777888887777766666422 244567777777778899999999
Q ss_pred HHHHHHhcC--CCCHhhHHHHHH------HhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCcc
Q 004269 215 IWEDYIKHY--SLSIFSLRKFVW------SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286 (764)
Q Consensus 215 ~~~~~~~~~--~~~~~~~~~li~------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (764)
+.+...+.. .|+...+..... ...+.|..+.|.+.+......-++.-
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkl------------------------- 219 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKL------------------------- 219 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHH-------------------------
Confidence 999998753 566666554433 34566777777777665543111100
Q ss_pred ccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH-hcC-ChhHHHHHHHHHHHCCCCCCHH
Q 004269 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV-SDR-GLRNGMEVLKIMQQNNLKPQDS 364 (764)
Q Consensus 287 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~-~~~~a~~~~~~~~~~~~~~~~~ 364 (764)
..-.+-...+.+.+++++|..++..+... .||...|...+..+. +.. .......+|....+.-......
T Consensus 220 -------a~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p 290 (700)
T KOG1156|consen 220 -------AFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP 290 (700)
T ss_pred -------HHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc
Confidence 12223455677889999999999999886 578877766665444 233 3333336666554432111100
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCC
Q 004269 365 TIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNA 444 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~ 444 (764)
. ..=++...-..-.+..-.++......|-+.++..+.+-|-.-...+ ++++.. ..|...+........
T Consensus 291 ~-Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~----~le~Lv-------t~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 291 R-RLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVA----FLEKLV-------TSYQHSLSGTGMFNF 358 (700)
T ss_pred h-hccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhH----HHHHHH-------HHHHhhcccccCCCc
Confidence 0 0000000001111222233334444434445555554443322222 222111 111111111110000
Q ss_pred chhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHH--HHHHHHhcCcHHHHHHHHHhc-CCCCChh-hHHHHHHHHH
Q 004269 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKN--LLKALGAEGMIRELIQYFCDS-KTPLGTP-TYNTVLHSLV 520 (764)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~-~~~~~~~-~~~~li~~~~ 520 (764)
. +. ...-+|+...|+. ++..|-+.|+++.|...++.. ...|+.+ .|.+-...+.
T Consensus 359 ~----------D~------------~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~k 416 (700)
T KOG1156|consen 359 L----------DD------------GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFK 416 (700)
T ss_pred c----------cc------------cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 0 00 0011455555554 788899999999999999875 4455543 5666667888
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHH--------HHH--HHHHHH
Q 004269 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMT--------YTA--LIKILL 590 (764)
Q Consensus 521 ~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~--------~~~--li~~~~ 590 (764)
..|++++|..++++.++.+ .||...-+--..-..+++..++|..+.....+.|. +... |-. =..+|.
T Consensus 417 H~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~ 493 (700)
T KOG1156|consen 417 HAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYL 493 (700)
T ss_pred hcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHH
Confidence 9999999999999998876 45655544555566678999999999999988875 2222 211 135677
Q ss_pred hcCCHHHHHHHHHHHH
Q 004269 591 DYGDFDEALNLLDLVS 606 (764)
Q Consensus 591 ~~g~~~~A~~~~~~m~ 606 (764)
+.|++.+|++=|..+.
T Consensus 494 r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 494 RQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHHHHhhHH
Confidence 8888877776665543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-06 Score=91.71 Aligned_cols=588 Identities=13% Similarity=0.103 Sum_probs=302.2
Q ss_pred HHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHH
Q 004269 13 IADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH 92 (764)
Q Consensus 13 ~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (764)
.+..|...|.++++. . |-...|+.|+ |..++....+ -.++.+.++...|.+.. +....++.
T Consensus 487 Vi~cfAE~Gqf~Kii-l----------Y~kKvGyTPd-----ymflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~ 547 (1666)
T KOG0985|consen 487 VIQCFAETGQFKKII-L----------YAKKVGYTPD-----YMFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQ 547 (1666)
T ss_pred HHHHHHHhcchhHHH-H----------HHHHcCCCcc-----HHHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHH
Confidence 455666677777766 2 2223566555 3344444444 67888888887777644 22222333
Q ss_pred HHHHhhCC----------------CChhH---HHHHHHHHHH-----------cCccccHHHHHHHHHHHHccCCHHHHH
Q 004269 93 ILNYCARS----------------PDPLF---VMETWRMMEE-----------KEIGLNNKCYLLMMQALCKGGYLEEAS 142 (764)
Q Consensus 93 ll~~~~~~----------------~~~~~---a~~~~~~m~~-----------~~~~~~~~~~~~li~~~~~~g~~~~A~ 142 (764)
+...+... ..++. -.++++.-.. .++ -+..-+..+.+.|.++|-...|+
T Consensus 548 I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~m-FtHyDra~IAqLCEKAGL~qraL 626 (1666)
T KOG0985|consen 548 IVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDM-FTHYDRAEIAQLCEKAGLLQRAL 626 (1666)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccc-cccccHHHHHHHHHhcchHHHHH
Confidence 33322222 22221 1122222111 111 01122556777888899999998
Q ss_pred HHHHHHhhhcC--CCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHH
Q 004269 143 NLIYFLGERYG--IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 143 ~~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 220 (764)
+.+..+..-.. +..+...=..+ -.|.-.-.++.+.+.++.|...++.-+..+...+..-|...=..+...++|+...
T Consensus 627 ehytDl~DIKR~vVhth~L~pEwL-v~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fk 705 (1666)
T KOG0985|consen 627 EHYTDLYDIKRVVVHTHLLNPEWL-VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFK 705 (1666)
T ss_pred HhcccHHHHHHHHHHhccCCHHHH-HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhc
Confidence 87776643110 00000011122 2344456789999999999998888888887777777777666677777777765
Q ss_pred h------------cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCcccc
Q 004269 221 K------------HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPV 288 (764)
Q Consensus 221 ~------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (764)
. .+..|+.+.-..|.+.++.|++.+..++-++- +.+.+..+...+.++++....|.-....
T Consensus 706 s~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicres-------n~YdpErvKNfLkeAkL~DqlPLiiVCD 778 (1666)
T KOG0985|consen 706 SYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRES-------NCYDPERVKNFLKEAKLTDQLPLIIVCD 778 (1666)
T ss_pred cchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcc-------ccCCHHHHHHHHHhccccccCceEEEec
Confidence 3 25678888889999999999999988775542 1111122234455555555555432222
Q ss_pred c-----hhhhhhHH----HHHHHHHccCCHHHHHHHHHHHHHCCCC-----------CCcccHHHHHHHHHhcCChhHHH
Q 004269 289 M-----KVLRWSFS----DVIHACGRTQNSGLAEQLMLQMQSLGLQ-----------PSSHTYDGFIRAIVSDRGLRNGM 348 (764)
Q Consensus 289 ~-----~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~g~~-----------p~~~~~~~ll~~~~~~~~~~~a~ 348 (764)
| +...+.|. -.|..|.+.=++...-.+...+..-.+. ...+...-|..-+-+.+++..-.
T Consensus 779 Rf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLl 858 (1666)
T KOG0985|consen 779 RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLL 858 (1666)
T ss_pred ccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHH
Confidence 2 11111111 1123333332222222222111111100 01112233344445556666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHH---------
Q 004269 349 EVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFA--------- 419 (764)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~--------- 419 (764)
-.++.....|.. |..++++|...|...++-.+- ++. . +..-=+..+.-||...++.-|.-.|+
T Consensus 859 p~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~--fLk----e-N~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI 930 (1666)
T KOG0985|consen 859 PWLESLIQEGSQ-DPATHNALAKIYIDSNNNPER--FLK----E-NPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELI 930 (1666)
T ss_pred HHHHHHHhccCc-chHHHhhhhheeecCCCChHH--hcc----c-CCcchhhHHhhhhcccCCceEEEeecccCCcHHHH
Confidence 667777777766 777788877777665432211 000 0 11111122233443333322221111
Q ss_pred ----------HHhc--cCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCC--ccHHHHHHHHH
Q 004269 420 ----------KMRQ--KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ--HSHISMKNLLK 485 (764)
Q Consensus 420 ----------~m~~--~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ 485 (764)
...+ --+.|...|..++. . ....-..+...+...+++ .|+...+..+.
T Consensus 931 ~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~----------------e--~n~~rRqLiDqVv~tal~E~~dPe~vS~tVk 992 (1666)
T KOG0985|consen 931 NVCNENSLFKSQARYLVERSDPDLWAKVLN----------------E--ENPYRRQLIDQVVQTALPETQDPEEVSVTVK 992 (1666)
T ss_pred HhcCchhHHHHHHHHHHhccChHHHHHHHh----------------c--cChHHHHHHHHHHHhcCCccCChHHHHHHHH
Confidence 1111 01223333333331 0 001111233344444443 24455566788
Q ss_pred HHHhcCcHHHHHHHHHhcCCCCChhh-----HHHHHHHHHHcCChHHHHHHHHHHHhCC---------------------
Q 004269 486 ALGAEGMIRELIQYFCDSKTPLGTPT-----YNTVLHSLVEAQESHRAMEIFKQMKTCG--------------------- 539 (764)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~li~~~~~~~~~~~A~~l~~~m~~~g--------------------- 539 (764)
++...+...+.+++++++...+++++ -|.+|-...+ -+..+.++..+++-.-+
T Consensus 993 AfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~if 1071 (1666)
T KOG0985|consen 993 AFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIF 1071 (1666)
T ss_pred HHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHH
Confidence 88888888888888888755554432 2223322222 22233333333332221
Q ss_pred --CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004269 540 --IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617 (764)
Q Consensus 540 --~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 617 (764)
+..+......+|. ..+.+++|.++-+.. -.+..|+.+..+-.+.|.+.+|.+-|-+ ..|+..|
T Consensus 1072 kkf~~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y 1136 (1666)
T KOG0985|consen 1072 KKFDMNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNY 1136 (1666)
T ss_pred HHhcccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHH
Confidence 0112222222222 223444444443332 2455677788888888888887776654 2466778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004269 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEAL 672 (764)
Q Consensus 618 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 672 (764)
.-+++.+.+.|.+++-.+.+...++..-+|...+ .|+-+|++.++..+..+++
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh
Confidence 8888888888888888877776666555555443 5677777777777766554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5e-08 Score=95.93 Aligned_cols=191 Identities=16% Similarity=0.131 Sum_probs=140.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhc--CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh
Q 004269 480 MKNLLKALGAEGMIRELIQYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII 557 (764)
Q Consensus 480 ~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 557 (764)
|-.+..+|....+.++..+.|+.. ..+-|..+|..-...+.-.+++++|..=|++.+... +-+...|..+--+..+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHH
Confidence 334555677777777777777654 223355567766677777789999999999988853 22455666666667788
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCC--HHHHHHHHHHHHHcCCH
Q 004269 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG-----IPHD--VLLYNTILKKACEKGRI 630 (764)
Q Consensus 558 g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~--~~~~~~li~~~~~~g~~ 630 (764)
+.++++...|++..+. ++-.+..|+.....+...++++.|.+.|+..++.. +..+ +.+--.++-.-.+ +++
T Consensus 442 ~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~ 519 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDI 519 (606)
T ss_pred HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhH
Confidence 9999999999999876 66678899999999999999999999999987531 1112 2222333333233 899
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004269 631 DVIEFIIEQMHQNKVQPD-PSTCHFVFSGYVNCGFHNSAMEALQVL 675 (764)
Q Consensus 631 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 675 (764)
..|+.++++..+ +.|. ...|..|-..-.+.|+.++|+++|++-
T Consensus 520 ~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 520 NQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999986 5564 446777778889999999999999853
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-06 Score=88.53 Aligned_cols=466 Identities=12% Similarity=0.084 Sum_probs=254.7
Q ss_pred hhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCC------CCChhcHHHHHHHhhCCCChh---HHHH
Q 004269 38 RTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHH------SLGADDFFHILNYCARSPDPL---FVME 108 (764)
Q Consensus 38 r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~---~a~~ 108 (764)
|.|.+-+++.|+. ...+ |.-+++.+++++|.+.+.+...... +-+-..|..+-...+++.+.- ....
T Consensus 159 rvyrRYLk~~P~~-~eey---ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvda 234 (835)
T KOG2047|consen 159 RVYRRYLKVAPEA-REEY---IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDA 234 (835)
T ss_pred HHHHHHHhcCHHH-HHHH---HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHH
Confidence 7777778888886 3333 5557889999999999988875431 222334555556656554333 2344
Q ss_pred HHHHHHHcCccccH--HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC--------------
Q 004269 109 TWRMMEEKEIGLNN--KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH-------------- 172 (764)
Q Consensus 109 ~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-------------- 172 (764)
++..+... -+|. ..|++|..-|.+.|.++.|..+|++.... ..++.-|..+.++|++-.
T Consensus 235 iiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~ 309 (835)
T KOG2047|consen 235 IIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEE 309 (835)
T ss_pred HHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 55554443 3443 48899999999999999999999987643 123334455555554321
Q ss_pred --------CHHHHHHHHHHHhhcCC-----------CCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCC------H
Q 004269 173 --------SMVHANLCLDLMDSRMV-----------GKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS------I 227 (764)
Q Consensus 173 --------~~~~A~~~~~~m~~~g~-----------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~ 227 (764)
+++-.+.-|+.+..... ..++.+|..-++ ...|+..+....+.+.++...|- .
T Consensus 310 ~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~ 387 (835)
T KOG2047|consen 310 SGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPG 387 (835)
T ss_pred ccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChh
Confidence 12222333333332211 012222222222 23455666677777777653332 3
Q ss_pred hhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccC
Q 004269 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ 307 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 307 (764)
..|..+...|-..|+++.|..+|++..+-....-... ..+|-.-...=.++.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL----------------------------a~vw~~waemElrh~ 439 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL----------------------------AEVWCAWAEMELRHE 439 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH----------------------------HHHHHHHHHHHHhhh
Confidence 3577888889999999999999998876322211100 246666667777888
Q ss_pred CHHHHHHHHHHHHHCCCCCCc--------------------ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 004269 308 NSGLAEQLMLQMQSLGLQPSS--------------------HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIA 367 (764)
Q Consensus 308 ~~~~a~~~~~~m~~~g~~p~~--------------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 367 (764)
+++.|+.+++.... .|.. ..|...+..--..|-++....+|+.+.+..+. ++.+.-
T Consensus 440 ~~~~Al~lm~~A~~---vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~ 515 (835)
T KOG2047|consen 440 NFEAALKLMRRATH---VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIII 515 (835)
T ss_pred hHHHHHHHHHhhhc---CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 88888888877653 2222 11222233333456666666667766666554 333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC----CCccHHHHHHHHHhc---CCHHHHHHHHHHHhccCCCCHHHHHHHHHHhc
Q 004269 368 TLSVECSKALELDLAEALLDQISRCT----NPKPFSAFLAACDTM---DKPERAIKIFAKMRQKLRPDIRTYELLFSLFG 440 (764)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~li~~~~~~---~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~ 440 (764)
.....+-.+.-++++.++++.-.... --..|+..+.-+.+. ..++.|..+|++..++++|...-+..++-+
T Consensus 516 NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA-- 593 (835)
T KOG2047|consen 516 NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYA-- 593 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--
Confidence 33334444555666666665543322 112456555554432 356666677766666555544333322211
Q ss_pred CCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCC--CC--hhhHHHHH
Q 004269 441 NVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP--LG--TPTYNTVL 516 (764)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~--~~~~~~li 516 (764)
..=-+.|....|.+++++.... +. ...||+.|
T Consensus 594 --------------------------------------------~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 594 --------------------------------------------KLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYI 629 (835)
T ss_pred --------------------------------------------HHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0011234555566666553221 11 22566666
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHhhCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 004269 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID---CCSIIRCFKSASALVSMMVRD-GFYPQTMTYTALIKILLDY 592 (764)
Q Consensus 517 ~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~---~~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~~~~ 592 (764)
.--+..=.+.....+|++.++. -||...-...|. .=++.|..+.|..++..-.+. ....+...|.+.=..=.+.
T Consensus 630 ~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrH 707 (835)
T KOG2047|consen 630 KKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRH 707 (835)
T ss_pred HHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhc
Confidence 5444444444455566666554 455544333332 234556666666666554443 2333444555555555555
Q ss_pred CC
Q 004269 593 GD 594 (764)
Q Consensus 593 g~ 594 (764)
|+
T Consensus 708 Gn 709 (835)
T KOG2047|consen 708 GN 709 (835)
T ss_pred CC
Confidence 55
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-11 Score=83.93 Aligned_cols=49 Identities=35% Similarity=0.620 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004269 577 PQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKAC 625 (764)
Q Consensus 577 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 625 (764)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||++||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.9e-08 Score=92.59 Aligned_cols=288 Identities=13% Similarity=0.047 Sum_probs=191.3
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004269 305 RTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384 (764)
Q Consensus 305 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 384 (764)
-.|++.+|.++..+-.+.+-.| ...|..-..+.-..|+.+.+-.++.+.-+.--.++..++-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3799999999999988776432 345666667788999999999999999887556677777788888999999999999
Q ss_pred HHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHH
Q 004269 385 LLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461 (764)
Q Consensus 385 ~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (764)
-.+++.... ++..-.....+|.+.|++.+...++.+|.+ ++--|...-..
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l--------------------------- 227 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL--------------------------- 227 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------
Confidence 988887654 777888899999999999999999999998 65444322100
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004269 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK--TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539 (764)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g 539 (764)
...+++.+++-....+..+.-...+++.. .+.+...-.+++.-+.+.|+.++|.++..+..+++
T Consensus 228 --------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~ 293 (400)
T COG3071 228 --------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ 293 (400)
T ss_pred --------------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 01122223333333333333223333221 12234444556666677777777777777777766
Q ss_pred CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004269 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD-GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618 (764)
Q Consensus 540 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 618 (764)
..|+..+ +-.+.+.++.+.-.+..+.-.+. +- ++-.+.+|...|.+.+.+.+|.+.|+...+ ..|+..+|+
T Consensus 294 ~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~ 365 (400)
T COG3071 294 WDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYA 365 (400)
T ss_pred cChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHH
Confidence 6555222 12344556665555555444433 33 335566677777777777777777776553 367777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 004269 619 TILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 619 ~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
-+..++.+.|+..+|.+..++...
T Consensus 366 ~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 366 ELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 777777777777777777666554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-08 Score=98.08 Aligned_cols=323 Identities=11% Similarity=-0.067 Sum_probs=200.4
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCC-hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLG-ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
...+-++|.+++|++.|.+.++.. |+ +.-|.....+|...|+++.+.+-....++.+ +.-+..+..-.+++-..|+
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHhhcc
Confidence 445667899999999999998865 77 6678888888889999999999999888874 2234567777788888888
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc--CCCCChhhHHHHHHHHHh----------
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR--MVGKNEVTYTELLKLAVW---------- 205 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~---------- 205 (764)
+++|+.=+.-..--.|+. |..+--.+=+.+-+.+. ..+.+ .+... -+-|+.....+.+..+..
T Consensus 199 ~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~a~-~ka~e---~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQ-NASIEPMAERVLKKQAM-KKAKE---KLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHHHH-HHHHH---hhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 888755332221111111 11110000011111110 11111 12211 122332222222221110
Q ss_pred ---------------hc---ChhHHHHHHHHHHhc--CCCCH-----------hhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004269 206 ---------------QK---NLSAVHEIWEDYIKH--YSLSI-----------FSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 206 ---------------~~---~~~~a~~~~~~~~~~--~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~~~ 254 (764)
.+ .+..+.+.+.+-..+ ..++. .+...-...+.-+|+.-.|..-|+...
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 01 122222222222111 11111 122222223456688888888888887
Q ss_pred HhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHH
Q 004269 255 ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGF 334 (764)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 334 (764)
+....++. .|--+...|...++.++.+..|+.....+.. |+.+|..-
T Consensus 354 ~l~~~~~~--------------------------------lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHR 400 (606)
T KOG0547|consen 354 KLDPAFNS--------------------------------LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHR 400 (606)
T ss_pred hcCcccch--------------------------------HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhH
Confidence 73333322 4666778889999999999999998876532 55566666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHH
Q 004269 335 IRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPE 412 (764)
Q Consensus 335 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~ 412 (764)
-....-.+++++|..=|++.+..... +...|..+..+.-|.+.+++++..|++...+. .+..|+.....+..+++++
T Consensus 401 gQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd 479 (606)
T KOG0547|consen 401 GQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFD 479 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHH
Confidence 66666678899999999988876544 45556666667778889999999999988765 6778999999999999999
Q ss_pred HHHHHHHHHhc
Q 004269 413 RAIKIFAKMRQ 423 (764)
Q Consensus 413 ~a~~l~~~m~~ 423 (764)
.|.+.|+...+
T Consensus 480 ~A~k~YD~ai~ 490 (606)
T KOG0547|consen 480 KAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHh
Confidence 99999988776
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-06 Score=82.29 Aligned_cols=201 Identities=12% Similarity=0.069 Sum_probs=127.3
Q ss_pred HHHHHhcCcHHHHHHHHHhcCC-CCChhhHHHHH-----HHHHHcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHh
Q 004269 484 LKALGAEGMIRELIQYFCDSKT-PLGTPTYNTVL-----HSLVEAQESHRAMEIFKQMKTCGIPPNAAT-YNIMIDCCSI 556 (764)
Q Consensus 484 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li-----~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~ 556 (764)
+--|.+.+++.+|..+..+..+ .|-....-.+. .-........-|.+.|+-.-+++..-|... -.++..++.-
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred eeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 3456788899999998877622 12221111111 111122234567777766655554433321 2334445555
Q ss_pred hCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHH
Q 004269 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT-ILKKACEKGRIDVIEF 635 (764)
Q Consensus 557 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~ 635 (764)
..++++.+-+++.+...-..-|.+.+| +..+++..|...+|+++|-++....++ |..+|.+ |.+.|.+.++.+.|..
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHH
Confidence 667889999998888765555666665 788999999999999999888654444 4455554 5667788889988876
Q ss_pred HHHHHHHCCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHhhhccccCchHhhh
Q 004269 636 IIEQMHQNKVQPDPSTCHFVF-SGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKR 691 (764)
Q Consensus 636 ~~~~m~~~~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 691 (764)
++-++ +-..+....--+| +.|.++|.+=-|-+.|+.++.-. |.+..|.-.+
T Consensus 450 ~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnWeGKR 501 (557)
T KOG3785|consen 450 MMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPENWEGKR 501 (557)
T ss_pred HHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCccccCCcc
Confidence 64443 4444555555555 48889999988889999887643 4444554443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.8e-06 Score=83.60 Aligned_cols=296 Identities=14% Similarity=0.118 Sum_probs=151.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC--C----CccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCC---------
Q 004269 365 TIATLSVECSKALELDLAEALLDQISRCT--N----PKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPD--------- 428 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~----~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~--------- 428 (764)
.+..+...|-..|+++.|+.+|+...+-+ . ..+|-.-...=.+..+++.|+++.+.... .-.|.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 35567777888888888888888877653 0 12333333444556677777777666544 11111
Q ss_pred --HHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc---
Q 004269 429 --IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS--- 503 (764)
Q Consensus 429 --~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--- 503 (764)
...+.++. ..+.. .++.+.++..+..+.+++.+....+.... +.-...-.+..+..++++.+++++.
T Consensus 469 vQ~rlhrSlk-iWs~y------~DleEs~gtfestk~vYdriidLriaTPq-ii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 469 VQARLHRSLK-IWSMY------ADLEESLGTFESTKAVYDRIIDLRIATPQ-IIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred HHHHHHHhHH-HHHHH------HHHHHHhccHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 01111110 00000 01111122223334445555555443222 1122222334455677788877764
Q ss_pred CCCCChh-hHHHHHHHHHHc---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhhCChhHHHHHHHHHHHCCCCC
Q 004269 504 KTPLGTP-TYNTVLHSLVEA---QESHRAMEIFKQMKTCGIPPNAATYNIMIDCC--SIIRCFKSASALVSMMVRDGFYP 577 (764)
Q Consensus 504 ~~~~~~~-~~~~li~~~~~~---~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~g~~p 577 (764)
-..|++. .||..+.-+.+. ...+.|..+|++..+ |++|...-+.-|+-+- -..|....|..++++.... +++
T Consensus 541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~ 618 (835)
T KOG2047|consen 541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKE 618 (835)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCH
Confidence 1234443 677766665553 356788888888877 5655443332222211 1236667777888776543 333
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHCCCCC--CHH
Q 004269 578 Q--TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL---KKACEKGRIDVIEFIIEQMHQNKVQP--DPS 650 (764)
Q Consensus 578 ~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~ 650 (764)
. ...||..|.--...=-+.....+|++.++. -||...-...| ..=++.|..++|..++..--+- +.| +..
T Consensus 619 a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~ 695 (835)
T KOG2047|consen 619 AQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTE 695 (835)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChH
Confidence 2 245666665444333344455666666654 45544333322 3335678888888887765432 333 334
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 004269 651 TCHFVFSGYVNCGFHNSAMEALQ 673 (764)
Q Consensus 651 ~~~~ll~~~~~~g~~~~a~~~~~ 673 (764)
.|.+.-..=.+.|+-+...+.++
T Consensus 696 fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 696 FWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Confidence 44444444567777554444443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.9e-09 Score=100.64 Aligned_cols=201 Identities=14% Similarity=-0.012 Sum_probs=166.8
Q ss_pred hhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004269 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 131 (764)
...+..+...+...|++++|++.+++..... +.+...+..+...+...|+++.|.+.+++..+.+ +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4555566778889999999999999988765 4456677888889999999999999999999875 4466788888999
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhH
Q 004269 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
+...|++++|.+.|++.......+.....+..+...+...|++++|...|+...+.... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 99999999999999998753222233456777888899999999999999998876432 45678888889999999999
Q ss_pred HHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
|...++...+..+.+...+..+...+...|+.+.|..+.+.+.+
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999887666778888888999999999999999888765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-06 Score=87.10 Aligned_cols=333 Identities=7% Similarity=-0.099 Sum_probs=178.0
Q ss_pred hhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004269 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 131 (764)
...+..+++.+..+.++.-|+-+-++....+ .++..--.+.+++.-.++.+.|..+...-.-. ..|..+.......
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKC 91 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHH
Confidence 3344555667788888888888888876554 66666667788887788888887777654322 3466666677777
Q ss_pred HHccCCHHHHHHHHHHHhhh-cCC-----------CCChhh----hHHHH-------HHHhccCCHHHHHHHHHHHhhcC
Q 004269 132 LCKGGYLEEASNLIYFLGER-YGI-----------YPILPV----YNSFL-------GACAKLHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~-~~~-----------~~~~~~----~~~li-------~~~~~~g~~~~A~~~~~~m~~~g 188 (764)
+.+...+++|..++..-... .++ .+|..- -+.-. ..|....+.++|...|.+....
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~- 170 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA- 170 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc-
Confidence 88888899998888722100 000 011000 01111 1122223344444444443322
Q ss_pred CCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccC-CHHHHHHHHHHHHHhhccCcchhccc
Q 004269 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR-DLKSAYETLQHMVALAMMGKLYINRT 267 (764)
Q Consensus 189 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ 267 (764)
|...|..+..... ...-.+.+-|+.+.. .|... -.+ +.+.-..+|+........-...+.
T Consensus 171 ---D~~c~Ea~~~lvs--~~mlt~~Ee~~ll~~---l~~a~---------~~~ed~e~l~~lyel~~~k~~n~~~~~r-- 231 (611)
T KOG1173|consen 171 ---DAKCFEAFEKLVS--AHMLTAQEEFELLES---LDLAM---------LTKEDVERLEILYELKLCKNRNEESLTR-- 231 (611)
T ss_pred ---chhhHHHHHHHHH--HHhcchhHHHHHHhc---ccHHh---------hhhhHHHHHHHHHHhhhhhhcccccccc--
Confidence 3333322221110 001111111111110 00000 001 111111122211100000000000
Q ss_pred ccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHH
Q 004269 268 SEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347 (764)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 347 (764)
.+..+-..-..+. ...-.-..-+...+++.+..++++...+.. ++....+..=|..+...|+..+-
T Consensus 232 -----------~~~~sl~~l~~~~--dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~L 297 (611)
T KOG1173|consen 232 -----------NEDESLIGLAENL--DLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKL 297 (611)
T ss_pred -----------CchhhhhhhhhcH--HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchH
Confidence 0000000000111 233445556677888888888888888753 45666666667777788887777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 348 MEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
..+=..+.+.-+. ...+|-++...|.-.|...+|++.|....... -...|-.+...|+-.|..+.|+..+...-+
T Consensus 298 f~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar 374 (611)
T KOG1173|consen 298 FLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR 374 (611)
T ss_pred HHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH
Confidence 7777777766444 55667777777777788888888888876653 345688888888888888888877766544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-09 Score=97.87 Aligned_cols=232 Identities=10% Similarity=0.075 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHH-HHHH
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYT-ELLK 201 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~ 201 (764)
+--+.+.+.|.+.|.+.+|.+.|+.-.+. .|-+.+|-.|-++|.+-.+.+.|+.+|.+-.+. .|..+||. -+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHH
Confidence 33467788888888888888888876654 355568888888888888888888888877664 45556654 3555
Q ss_pred HHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCc
Q 004269 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (764)
.+...++.+.|.++|+...+..+.++.+...+...|.-.++++.|++.+.++.+.|+....
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe------------------- 359 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE------------------- 359 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH-------------------
Confidence 6677888888888888888888888888777778888888888888888888888777654
Q ss_pred cCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc--cHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 004269 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH--TYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359 (764)
Q Consensus 282 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 359 (764)
.|+.+.-+|.-.+++|.++..|.+....--.|+.. .|-.+-...+..||+..|.+.|+.....+.
T Consensus 360 -------------Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 360 -------------LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred -------------HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 78888888888888888888888877654444432 354555566677888888888888887765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 004269 360 KPQDSTIATLSVECSKALELDLAEALLDQISRC 392 (764)
Q Consensus 360 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 392 (764)
. ....++.|...-.+.|+++.|..+++.....
T Consensus 427 ~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 427 Q-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred c-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 5 5566777777777888888888887776654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.6e-08 Score=95.57 Aligned_cols=96 Identities=14% Similarity=-0.019 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 004269 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 201 (764)
...+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 4455555566666666666666666554321 223344555555555555555555555555543211 2233333334
Q ss_pred HHHhhcChhHHHHHHHHHH
Q 004269 202 LAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~ 220 (764)
.+...|++++|.+.++...
T Consensus 108 ~~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HHHHcccHHHHHHHHHHHH
Confidence 4444444444444444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-05 Score=81.94 Aligned_cols=472 Identities=11% Similarity=0.069 Sum_probs=236.0
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH--Hhh
Q 004269 129 MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA--VWQ 206 (764)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~ 206 (764)
++.+...|++++|.+....+.. +.+.+...+..-+-++.+.+.+++|+++.+.-.. ...+.+-+ +=++| .+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~--fEKAYc~Yrl 92 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFF--FEKAYCEYRL 92 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhh--HHHHHHHHHc
Confidence 5677888999999999998864 3355666777888888899999999865543221 01111111 22333 367
Q ss_pred cChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCcc
Q 004269 207 KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (764)
+..++|...+..+ .+.|..+...-...+.+.|++++|.++|+.+.+.+.+..+
T Consensus 93 nk~Dealk~~~~~---~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d------------------------ 145 (652)
T KOG2376|consen 93 NKLDEALKTLKGL---DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD------------------------ 145 (652)
T ss_pred ccHHHHHHHHhcc---cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH------------------------
Confidence 7777777777622 2333445555556677778888888888887764433221
Q ss_pred ccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCCH
Q 004269 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA---IVSDRGLRNGMEVLKIMQQNNLKPQD 363 (764)
Q Consensus 287 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~ 363 (764)
...-..++.+-. +... ..|......| ..+|..+.+. +...|++.+|+++++...+.+.+.
T Consensus 146 ------~~~r~nl~a~~a-------~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-- 208 (652)
T KOG2376|consen 146 ------EERRANLLAVAA-------ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREK-- 208 (652)
T ss_pred ------HHHHHHHHHHHH-------hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh--
Confidence 011111111110 0111 0122222233 3355555542 235677788877777763322110
Q ss_pred HHHHHHHHHHHhcCCH--HHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHH---
Q 004269 364 STIATLSVECSKALEL--DLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSL--- 438 (764)
Q Consensus 364 ~~~~~li~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~--- 438 (764)
...++. ++-..-++ .+--.|...+...|+-.+|..++....+.-.+|........+.
T Consensus 209 ----------l~~~d~~eEeie~el~--------~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva 270 (652)
T KOG2376|consen 209 ----------LEDEDTNEEEIEEELN--------PIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVA 270 (652)
T ss_pred ----------hcccccchhhHHHHHH--------HHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhh
Confidence 000000 00000000 0112233444555666666666666555223333222222221
Q ss_pred hcCCCCchhhchhhhhh-hhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHH
Q 004269 439 FGNVNAPYEEGNMFSQV-DSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLH 517 (764)
Q Consensus 439 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~ 517 (764)
+.....+.+. ..+... ............+...........-+.++.+|. +..+.+.++-......-....+.+++.
T Consensus 271 ~~~d~~~~d~-~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~ 347 (652)
T KOG2376|consen 271 LSKDQNYFDG-DLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQ 347 (652)
T ss_pred hccccccCch-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHH
Confidence 1111111110 000000 000000000000000000011111233444443 334445554444322222334444443
Q ss_pred HHHH--cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHH--------HHHHCCCCCCHHHHHHHHH
Q 004269 518 SLVE--AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVS--------MMVRDGFYPQTMTYTALIK 587 (764)
Q Consensus 518 ~~~~--~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~--------~~~~~g~~p~~~~~~~li~ 587 (764)
...+ ......|.+++...-+..-.-.....-.++......|+++.|.+++. .+.+.+..|- +..+++.
T Consensus 348 ~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~ 425 (652)
T KOG2376|consen 348 EATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVA 425 (652)
T ss_pred HHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHH
Confidence 3322 23467777777777665322223445556666778899999999988 5555444444 4556777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004269 588 ILLDYGDFDEALNLLDLVSLE--GIPHDVL----LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN 661 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~--~~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 661 (764)
.+.+.++.+.|..++.+...- .-.+... ++.-+...-.+.|+.++|..+++++... ..+|..+...++.+|++
T Consensus 426 l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 426 LYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYAR 504 (652)
T ss_pred HHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHh
Confidence 888887776676666665421 1112222 3344444445779999999999999863 35677788888888887
Q ss_pred cCChHHHHHHHHHH
Q 004269 662 CGFHNSAMEALQVL 675 (764)
Q Consensus 662 ~g~~~~a~~~~~~~ 675 (764)
.. .+.|..+-+.+
T Consensus 505 ~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 505 LD-PEKAESLSKKL 517 (652)
T ss_pred cC-HHHHHHHhhcC
Confidence 64 56666655443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-05 Score=81.21 Aligned_cols=314 Identities=11% Similarity=-0.019 Sum_probs=174.7
Q ss_pred hCCcchHHHHHHhccccCCCCChhcHHHHHHHhh---CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHH
Q 004269 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCA---RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEA 141 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 141 (764)
.++.++++.-+......+.+.++.++..+...+. ..++.+++ ++-...+.-..|...++.+++.-.
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm--------- 308 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLM--------- 308 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHH---------
Confidence 5666777777777777766677766666554333 23444444 222222222222222222222111
Q ss_pred HHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh
Q 004269 142 SNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 142 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
-.+.++.. ..+.-+...|..|.-++...|+++.+.+.|++....-+ -....|..+-..+...|.-..|..+++...+
T Consensus 309 -~~~~k~r~-~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 309 -LLLRKLRL-KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred -HHHHHHHH-hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 01111110 11223555666666666777777777777776554322 2444566666666666666667776666655
Q ss_pred cC--CCCHhhHHHHHHHhh-ccCCHHHHHHHHHHHHHhh--ccCcchhcccccccccccccCCCccCCccccchhhhhhH
Q 004269 222 HY--SLSIFSLRKFVWSFT-RLRDLKSAYETLQHMVALA--MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 222 ~~--~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
.- ++|...+...-..|. +.+..++++.+-.++.... ...... ...|
T Consensus 386 ~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~-----------------------------~~~~ 436 (799)
T KOG4162|consen 386 KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLK-----------------------------PRGY 436 (799)
T ss_pred cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhh-----------------------------hhHH
Confidence 32 444444444444443 3345555555544444311 111000 0233
Q ss_pred HHHHHHHHc-----------cCCHHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 004269 297 SDVIHACGR-----------TQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364 (764)
Q Consensus 297 ~~li~~~~~-----------~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 364 (764)
-.+.-+|.. .....++++.+++..+.+ -.|++..|-++ -++..++++.|.+..++..+.+..-+..
T Consensus 437 l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~ 514 (799)
T KOG4162|consen 437 LFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAK 514 (799)
T ss_pred HHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHH
Confidence 333333322 122457888888888765 23433333333 3566789999999999999987777888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 365 TIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
.+..|.-.+.-.+++.+|+.+.+...... |-.....-+..-...++.++++.....+..
T Consensus 515 ~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~ 575 (799)
T KOG4162|consen 515 AWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLA 575 (799)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHH
Confidence 88888888888999999999988776542 222222223334457888888888777765
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=5e-08 Score=106.45 Aligned_cols=244 Identities=10% Similarity=-0.016 Sum_probs=137.5
Q ss_pred CHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHHh---------ccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhh
Q 004269 137 YLEEASNLIYFLGERYGIYPI-LPVYNSFLGACA---------KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 137 ~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (764)
++++|..+|++..+.+ |+ ...|..+..++. ..+++++|...+++..+..+. +..++..+-..+...
T Consensus 276 ~~~~A~~~~~~Al~ld---P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVNMS---PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc
Confidence 4567777777765432 32 234444443332 223467777777777665322 455566665666677
Q ss_pred cChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCcc
Q 004269 207 KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (764)
|++++|...+++..+..|.+...+..+..++...|++++|...+++..+ ..|...
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~----------------------- 406 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRA----------------------- 406 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCh-----------------------
Confidence 7777777777777776666677777777777777777777777777776 444431
Q ss_pred ccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 004269 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365 (764)
Q Consensus 287 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 365 (764)
..+..++..+...|++++|...+++..... .|+. ..+..+..++...|+.++|...+..+...... +...
T Consensus 407 -------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~ 477 (553)
T PRK12370 407 -------AAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIA 477 (553)
T ss_pred -------hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHH
Confidence 122233334555677777777777766542 2332 23444555666777777777777766544221 2223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 366 IATLSVECSKALELDLAEALLDQISRCT----NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
.+.+...|...| +.|...++.+.+.. ....+ +-..|.-.|+.+.+..+ +++.+
T Consensus 478 ~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 478 VNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 344444555555 35555555554422 11222 22334444555555444 55554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.9e-06 Score=82.15 Aligned_cols=467 Identities=12% Similarity=0.022 Sum_probs=238.3
Q ss_pred CChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH
Q 004269 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 164 (764)
.+..-+..+++=+.....+..|.-+-++....+. |+..--.+...+.-.|+++.|..++..-.- ...|..+....
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~l---e~~d~~cryL~ 88 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKL---EKRDIACRYLA 88 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhh---hhhhHHHHHHH
Confidence 3444566666655555667777777777766653 444444567888889999999888775421 13477788888
Q ss_pred HHHHhccCCHHHHHHHHHHHhhc--CC-----------CCChhh----HHHHH-------HHHHhhcChhHHHHHHHHHH
Q 004269 165 LGACAKLHSMVHANLCLDLMDSR--MV-----------GKNEVT----YTELL-------KLAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~--g~-----------~p~~~t----~~~ll-------~~~~~~~~~~~a~~~~~~~~ 220 (764)
...+.+..+++.|..++..-... .+ .+|..- -+.-. +.|....+.++|...|.+..
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al 168 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEAL 168 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHH
Confidence 88999999999999998732110 01 111111 00000 12222333444444444433
Q ss_pred hcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHH
Q 004269 221 KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300 (764)
Q Consensus 221 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 300 (764)
.........+..|+....- .+.+.|+.+.....
T Consensus 169 ~~D~~c~Ea~~~lvs~~ml-----t~~Ee~~ll~~l~~------------------------------------------ 201 (611)
T KOG1173|consen 169 LADAKCFEAFEKLVSAHML-----TAQEEFELLESLDL------------------------------------------ 201 (611)
T ss_pred hcchhhHHHHHHHHHHHhc-----chhHHHHHHhcccH------------------------------------------
Confidence 2111111111111111110 01111111110000
Q ss_pred HHHHccCCHHHHHHHHHHH----------------HHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 004269 301 HACGRTQNSGLAEQLMLQM----------------QSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS 364 (764)
Q Consensus 301 ~~~~~~~~~~~a~~~~~~m----------------~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 364 (764)
+-....+.+.-..+|+-- .-.+..-+.........-|-...++.+...+.+...+... +...
T Consensus 202 -a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~ 279 (611)
T KOG1173|consen 202 -AMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLP 279 (611)
T ss_pred -HhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcc
Confidence 000000011111111100 0001122223333333444456677777777777666532 2344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCC
Q 004269 365 TIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNV 442 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~ 442 (764)
.+-.-|.++...|+..+-..+=..+.+.. .+.+|-++.--|.-.|+.++|.+.|.+... +.|. |
T Consensus 280 ~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~-lD~~---f---------- 345 (611)
T KOG1173|consen 280 CLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATT-LDPT---F---------- 345 (611)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh-cCcc---c----------
Confidence 44444456666666555555544444432 566777777667667777777777766543 1110 0
Q ss_pred CCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc-CC-CCChhhHHHHHHHHH
Q 004269 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-KT-PLGTPTYNTVLHSLV 520 (764)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~ 520 (764)
...|-.+...|+-.+.-+.|...+... .. +..-..+--+.--|.
T Consensus 346 ----------------------------------gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 346 ----------------------------------GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYM 391 (611)
T ss_pred ----------------------------------cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 112223334444444444444443221 00 001111111223455
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHC----C-CC-CCHHHHHHHHHHHHhcCC
Q 004269 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD----G-FY-PQTMTYTALIKILLDYGD 594 (764)
Q Consensus 521 ~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----g-~~-p~~~~~~~li~~~~~~g~ 594 (764)
+.++.+-|.+.|.+..... +-|+..++-+--...+.+.+.+|..+|+..... + -+ .-..+++.|..+|.+.++
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 6677777777777665531 224455555555555567777777777665521 0 01 123456677777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657 (764)
Q Consensus 595 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 657 (764)
.++|+..+++.+.. .+.|..++.++.-.|...|+++.|.+.|.+.+ .+.||..+...+++
T Consensus 471 ~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 471 YEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence 77777777777653 24466777777777777777777777777776 56777766666665
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.6e-08 Score=106.71 Aligned_cols=244 Identities=11% Similarity=-0.048 Sum_probs=177.9
Q ss_pred ChhhhHHHHHHHhc-----cCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHh---------hcChhHHHHHHHHHHh
Q 004269 157 ILPVYNSFLGACAK-----LHSMVHANLCLDLMDSRMVGKN-EVTYTELLKLAVW---------QKNLSAVHEIWEDYIK 221 (764)
Q Consensus 157 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 221 (764)
+...|...+++... .+++++|...|++..+. .|+ ...|..+..++.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34455566665321 24568999999998875 444 3445444444332 3447899999999999
Q ss_pred cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHH
Q 004269 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301 (764)
Q Consensus 222 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 301 (764)
..+.+..++..+..++...|++++|...|++..+ ..|+. ...|..+..
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~------------------------------~~a~~~lg~ 380 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL--LSPIS------------------------------ADIKYYYGW 380 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHH
Confidence 8889999999999999999999999999999998 56665 247888899
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004269 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSH-TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380 (764)
Q Consensus 302 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 380 (764)
.+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...++++.+...+-+...+..+..+|...|+.+
T Consensus 381 ~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 381 NLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHE 458 (553)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999986 45432 333445556678999999999999887643324555677888899999999
Q ss_pred HHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHH
Q 004269 381 LAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ--KLRPDIRTYELLFSL 438 (764)
Q Consensus 381 ~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~--~~~p~~~t~~~ll~~ 438 (764)
+|...+..+.... +...++.+...|+..| ++|...++.+.+ ...|.......++.+
T Consensus 459 eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~ 518 (553)
T PRK12370 459 LARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLV 518 (553)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHH
Confidence 9999999987653 3344566666777777 488887887776 444444444444433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-05 Score=83.96 Aligned_cols=305 Identities=12% Similarity=-0.003 Sum_probs=186.4
Q ss_pred HHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhcc--
Q 004269 94 LNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL-- 171 (764)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-- 171 (764)
...+...|+++.|++.++.-... +.............|.+.|+.++|..++..+.+++ +.|..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34556778888888888764443 44455566777888888888888888888887654 23333444455544222
Q ss_pred ---CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChh-HHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHH
Q 004269 172 ---HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS-AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 172 ---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
.+.+....+|+++...- |...+...+.-.+.....+. .+...+..+.+. .-+.+++.|-..|.......-..
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHH
Confidence 35677788888877653 43333322222222211221 222333333322 23345666666676555555555
Q ss_pred HHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 004269 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS 327 (764)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 327 (764)
.++....... ..+... . ..............+++.-+...|-..|++++|++++++..+. .|+
T Consensus 164 ~l~~~~~~~l-~~~~~~-------------~-~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt 226 (517)
T PF12569_consen 164 SLVEEYVNSL-ESNGSF-------------S-NGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPT 226 (517)
T ss_pred HHHHHHHHhh-cccCCC-------------C-CccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCC
Confidence 5555554421 111100 0 0000111111122356677778888888999999988888876 466
Q ss_pred c-ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCc--------c
Q 004269 328 S-HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPK--------P 397 (764)
Q Consensus 328 ~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--------~ 397 (764)
. ..|..-.+.+-..|++.+|.+.++.....+.. |...-+..+..+.++|++++|.+++......+ ++. .
T Consensus 227 ~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~ 305 (517)
T PF12569_consen 227 LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCM 305 (517)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHH
Confidence 3 45666677788889999999888888888776 77788888888888899999888888887653 111 1
Q ss_pred H--HHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 398 F--SAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 398 ~--~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
| .....+|.+.|++..|+..|....+
T Consensus 306 Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 306 WFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 3345667778888888877776543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3e-08 Score=92.28 Aligned_cols=226 Identities=9% Similarity=-0.052 Sum_probs=138.6
Q ss_pred HHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004269 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 58 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
+...|.+.|-+.+|...|+.-.+. .|-+.||..|-++|-+...+..|+.++.+-+.. .+-++....-+.+.+-..++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 345566677777777777666554 366666766777777777777777777666654 23344444455666666677
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHH
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
.++|.++++...+..+ .++.....+..+|.-.++.+-|+..|+++.+-|+. +...|+.+--+|.-.++++.+..-|.
T Consensus 306 ~~~a~~lYk~vlk~~~--~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHP--INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhcCC--ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 7777777776654432 24444555555666667777777777777777665 55556666556666666776666666
Q ss_pred HHHhc---CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhh
Q 004269 218 DYIKH---YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRW 294 (764)
Q Consensus 218 ~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (764)
+.... ...-..+|..+.......||+..|.+.|+-........ ..
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h--------------------------------~e 430 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH--------------------------------GE 430 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch--------------------------------HH
Confidence 66543 22223456666666666677777766666655421111 13
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
++|.|.-.-.+.|++++|..++.....
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 666666666666666666666666554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.8e-05 Score=77.84 Aligned_cols=135 Identities=7% Similarity=-0.018 Sum_probs=84.4
Q ss_pred HhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH
Q 004269 96 YCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175 (764)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 175 (764)
+......+..|+.+++.+.... .-...|..+...|+..|+++.|.++|.+.. .++--|..|.++|+++
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHH
Confidence 3344455666666766666543 233456677778888888888888886441 4566778888888888
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHH
Q 004269 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQH 252 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 252 (764)
.|.++-++.. |+......|..-..-.-..|.+.+|+++|-.+. .|+ ..|.+|-+.|..+..+++.++
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~---~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG---EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc---Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 8887765543 344455556555555666777777777654331 222 234566666666666665544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.5e-05 Score=83.92 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004269 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 589 (764)
..|+.+..+-.+.|...+|++-|-+. -|+..|.-+++.+.+.|.+++-..++....+..-.|.+. +.||-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 47888888888888888888766432 367789999999999999999999999998887677665 4789999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004269 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669 (764)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 669 (764)
++.+++.+-++++. .||......+.+-|...|.++.|.-++... ..|..|...+...|++..|.
T Consensus 1177 Akt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHH
Confidence 99999888776653 478888888888888888888777666543 34555555666666666665
Q ss_pred HH
Q 004269 670 EA 671 (764)
Q Consensus 670 ~~ 671 (764)
..
T Consensus 1241 D~ 1242 (1666)
T KOG0985|consen 1241 DA 1242 (1666)
T ss_pred HH
Confidence 43
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.9e-07 Score=92.84 Aligned_cols=293 Identities=12% Similarity=0.065 Sum_probs=210.1
Q ss_pred HHHHHHhhCCcchHHHHHHhccccCCCCCh-hcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHcc-
Q 004269 58 QIVDALCRGERSRASHLLLNLGHAHHSLGA-DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKG- 135 (764)
Q Consensus 58 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~- 135 (764)
....+...|++++|++.+.+-... -+|. ..+......+.+.|+.++|..+|..++..+ +.|..-|..+..+....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhc
Confidence 344578899999999999885543 2454 446677788889999999999999999997 44555666666666332
Q ss_pred ----CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH-HHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChh
Q 004269 136 ----GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV-HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS 210 (764)
Q Consensus 136 ----g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 210 (764)
.+.+....+++++.+.. |.......+.-.+.....+. .+...+..+..+|+++ +|+.|-..|......+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHH
Confidence 35778888999886543 44444433433333333333 4445566677777553 5566666666565666
Q ss_pred HHHHHHHHHHhc---------------CCCCH--hhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccc
Q 004269 211 AVHEIWEDYIKH---------------YSLSI--FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLR 273 (764)
Q Consensus 211 ~a~~~~~~~~~~---------------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (764)
-..+++..+... .+|+. +++.-+...|...|+.++|+..+++..+ ..|+.
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~----------- 227 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTL----------- 227 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCc-----------
Confidence 666666665532 12343 4556677788899999999999999988 45654
Q ss_pred ccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 004269 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353 (764)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 353 (764)
...|..-.+.+-+.|++++|.+.++..++.... |.+.-+-....+.+.|++++|.+++..
T Consensus 228 -------------------~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 228 -------------------VELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred -------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 258888999999999999999999999987633 666777778888899999999999999
Q ss_pred HHHCCCCCCHHHH--------HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 004269 354 MQQNNLKPQDSTI--------ATLSVECSKALELDLAEALLDQISRC 392 (764)
Q Consensus 354 ~~~~~~~~~~~~~--------~~li~~~~~~g~~~~a~~~~~~~~~~ 392 (764)
..+.+..|-.... .....+|.+.|++..|++.|..+.+.
T Consensus 288 Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 288 FTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9887754433222 34567888999999998888777653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-05 Score=79.45 Aligned_cols=476 Identities=12% Similarity=0.024 Sum_probs=253.4
Q ss_pred HHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH-
Q 004269 55 TQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC- 133 (764)
Q Consensus 55 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~- 133 (764)
+..-+..+..++++++|.....++...+ +-+...+..-+-+..+.+.++.|..+.+.-.... ..+.+. .=.+||
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~---fEKAYc~ 89 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFF---FEKAYCE 89 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhh---HHHHHHH
Confidence 3344666778999999999999998876 5566678888888889999999885544322110 112222 234555
Q ss_pred -ccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH-hhcChhH
Q 004269 134 -KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAV-WQKNLSA 211 (764)
Q Consensus 134 -~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~ 211 (764)
+.+..++|...++... + .+..+...=...+-+.|++++|+++|+.+.+.+.. .+...+.+-+ ..+-...
T Consensus 90 Yrlnk~Dealk~~~~~~-~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLD-R----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQ 160 (652)
T ss_pred HHcccHHHHHHHHhccc-c----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhh
Confidence 6899999999988432 1 23335555666788899999999999999776432 2222222111 1111111
Q ss_pred HHHHHHHHHhcCCC-CHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccch
Q 004269 212 VHEIWEDYIKHYSL-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290 (764)
Q Consensus 212 a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (764)
+. +.+.....+. +-..+......++..|++..|+++++...+.+...-. .+. ...+....+
T Consensus 161 ~~--~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~------~~d----------~~eEeie~e 222 (652)
T KOG2376|consen 161 VQ--LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLE------DED----------TNEEEIEEE 222 (652)
T ss_pred HH--HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhc------ccc----------cchhhHHHH
Confidence 11 1111111222 2233334455678899999999999998543221100 000 000000011
Q ss_pred hhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH---HHhcCChhH--HHHHHHHHHHCCCCCCHHH
Q 004269 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA---IVSDRGLRN--GMEVLKIMQQNNLKPQDST 365 (764)
Q Consensus 291 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~~~~~~--a~~~~~~~~~~~~~~~~~~ 365 (764)
+ ...---|..++-..|+.++|..+|....+.. .+|........+- +....++.+ ++..++.....
T Consensus 223 l-~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~-------- 292 (652)
T KOG2376|consen 223 L-NPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK-------- 292 (652)
T ss_pred H-HHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHH--------
Confidence 1 0122234556677899999999999988875 3455333222222 222222211 11111111100
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccH-HHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCC
Q 004269 366 IATLSVECSKALELDLAEALLDQISRCTNPKPF-SAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNA 444 (764)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~ 444 (764)
..+.+...|..-.. ..+.. +.++..|.. ..+.+.++..... +..|. +.+.+++..+...
T Consensus 293 ------------l~~~~l~~Ls~~qk--~~i~~N~~lL~l~tn--k~~q~r~~~a~lp-~~~p~-~~~~~ll~~~t~~-- 352 (652)
T KOG2376|consen 293 ------------LAEFLLSKLSKKQK--QAIYRNNALLALFTN--KMDQVRELSASLP-GMSPE-SLFPILLQEATKV-- 352 (652)
T ss_pred ------------hHHHHHHHHHHHHH--HHHHHHHHHHHHHhh--hHHHHHHHHHhCC-ccCch-HHHHHHHHHHHHH--
Confidence 00111111111111 11111 233333332 2223333222211 22232 2333333322110
Q ss_pred chhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHh---cCCCCChhhHHHHHHHHHH
Q 004269 445 PYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCD---SKTPLGTPTYNTVLHSLVE 521 (764)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~li~~~~~ 521 (764)
+......+.+++.. ..+....+.--.++.....
T Consensus 353 --------------------------------------------~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 353 --------------------------------------------REKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred --------------------------------------------HHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 00012222222222 1112223455556677778
Q ss_pred cCChHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHC--CCCCCHH----HHHHHHH
Q 004269 522 AQESHRAMEIFK--------QMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD--GFYPQTM----TYTALIK 587 (764)
Q Consensus 522 ~~~~~~A~~l~~--------~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~p~~~----~~~~li~ 587 (764)
.|+++.|++++. .+.+.+..|- +...+...+.+.++-+.|.+++....+. .-.+... ++.-+..
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~ 466 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAE 466 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhH
Confidence 899999988888 5555555554 4455666777888877777777766642 1112222 2333344
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004269 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 640 (764)
.=.+.|..++|..+++++.+.. ++|..+...++.+|++. +.+.|+.+-..+
T Consensus 467 f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 467 FKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 4467899999999999998643 67889999999999887 788888765544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.6e-05 Score=78.62 Aligned_cols=517 Identities=11% Similarity=0.040 Sum_probs=242.2
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccC--------CCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAH--------HSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKC 124 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 124 (764)
..|..+...|.+..+++-|.-.+-.|.... .+.+..+=..+.-.....|..++|..++.+-.+.
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~-------- 829 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY-------- 829 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH--------
Confidence 456666666777777777666665554221 0011111112222223456677777777665543
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc----------CC-----
Q 004269 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR----------MV----- 189 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------g~----- 189 (764)
..|-..|-..|.|++|.++-+.- +.+... .+|..-..-+-..++.+.|++.|+..-.. .+
T Consensus 830 -DLlNKlyQs~g~w~eA~eiAE~~---DRiHLr-~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 830 -DLLNKLYQSQGMWSEAFEIAETK---DRIHLR-NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred -HHHHHHHHhcccHHHHHHHHhhc---cceehh-hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 23445566677777777765522 222221 24444444455566777777776542110 00
Q ss_pred ----CCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhc
Q 004269 190 ----GKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYIN 265 (764)
Q Consensus 190 ----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 265 (764)
..|...|.---......|+.+.|+.+|+.. .-|-++++..|-.|+.++|-++-++-- |.
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A--------~D~fs~VrI~C~qGk~~kAa~iA~esg------d~--- 967 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA--------KDYFSMVRIKCIQGKTDKAARIAEESG------DK--- 967 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHh--------hhhhhheeeEeeccCchHHHHHHHhcc------cH---
Confidence 011112222222222333344444333322 123344444444455555544432211 11
Q ss_pred ccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChh
Q 004269 266 RTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLR 345 (764)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 345 (764)
.+.-.|.+.|-..|++.+|..+|.+.. ++...|+.| +.++++
T Consensus 968 ----------------------------AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlc-KEnd~~ 1009 (1416)
T KOG3617|consen 968 ----------------------------AACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLC-KENDMK 1009 (1416)
T ss_pred ----------------------------HHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHH-HhcCHH
Confidence 244456666666677777777666554 233344433 222222
Q ss_pred HHHHHHHHH-------------HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH---------HhhC---C-CCccHH
Q 004269 346 NGMEVLKIM-------------QQNNLKPQDSTIATLSVECSKALELDLAEALLDQ---------ISRC---T-NPKPFS 399 (764)
Q Consensus 346 ~a~~~~~~~-------------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~---------~~~~---~-~~~~~~ 399 (764)
+-+.-+..| .+.|.. +...+..|-+.|.+.+|+++-=+ +.+. + |+...+
T Consensus 1010 d~L~nlal~s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~ 1084 (1416)
T KOG3617|consen 1010 DRLANLALMSGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLR 1084 (1416)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHH
Confidence 211111111 011111 12234456666666666554211 1110 0 333344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCC-CCcc--
Q 004269 400 AFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNN-IQHS-- 476 (764)
Q Consensus 400 ~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 476 (764)
-...-|+...++++|..++-..++ |...++.|.+.+-.- . ..+-+.|.-.. -.|+
T Consensus 1085 RcadFF~~~~qyekAV~lL~~ar~--------~~~AlqlC~~~nv~v-----------t---ee~aE~mTp~Kd~~~~e~ 1142 (1416)
T KOG3617|consen 1085 RCADFFENNQQYEKAVNLLCLARE--------FSGALQLCKNRNVRV-----------T---EEFAELMTPTKDDMPNEQ 1142 (1416)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHhcCCCch-----------h---HHHHHhcCcCcCCCccHH
Confidence 444455666677777776665554 444555554443210 0 01111111111 1122
Q ss_pred --HHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHH-------------HHHHHhCCCC
Q 004269 477 --HISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEI-------------FKQMKTCGIP 541 (764)
Q Consensus 477 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l-------------~~~m~~~g~~ 541 (764)
..+...+.+.|.+.|.+..|-+-|-+.+.+. ..|.++.+.|+.++..-+ -+-++..+..
T Consensus 1143 ~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl------~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq 1216 (1416)
T KOG3617|consen 1143 ERKQVLEQVAELCLQQGAYHAATKKFTQAGDKL------SAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQ 1216 (1416)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHhhhhhHH------HHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccc
Confidence 2344556777788888888888776665432 245666677766542111 0112222334
Q ss_pred CCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004269 542 PNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTIL 621 (764)
Q Consensus 542 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 621 (764)
-|+.+...++.-|.+..-++.--.+|+....- .+..|-.+-.+ .|-+++|.+.+.+..+.. .....++.|-
T Consensus 1217 ~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydKa---~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq 1287 (1416)
T KOG3617|consen 1217 DNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDKA---MGALEEAAKCLLKAEQKN--MSTTGLDALQ 1287 (1416)
T ss_pred cChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhHH---hHHHHHHHHHHHHHHhhc--chHHHHHHHH
Confidence 45556666665555554444433333322221 11111111111 244566666666665432 1222333332
Q ss_pred HHHHH-----------cCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 004269 622 KKACE-----------KGRIDVIEFIIEQMHQNKVQP----DPSTCHFVFSGYVNCGFHNSAMEALQVLSMRM 679 (764)
Q Consensus 622 ~~~~~-----------~g~~~~a~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 679 (764)
+-..+ ..|..+.+.-...|.+.-.-| -...|..||..+.+..+|..|-+.+++|..+.
T Consensus 1288 ~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1288 EDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 21111 124555555566666543333 34467778889999999999999999998754
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.8e-07 Score=92.79 Aligned_cols=245 Identities=18% Similarity=0.199 Sum_probs=154.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C--CCc---cHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHH
Q 004269 365 TIATLSVECSKALELDLAEALLDQISRC-----T--NPK---PFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYEL 434 (764)
Q Consensus 365 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~--~~~---~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ 434 (764)
+...+...|...|+++.|+.++...... + ... ..+.+...|...+++++|..+|+++.. +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~----------i 270 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT----------I 270 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----------H
Confidence 3344555666666666666665554332 0 111 123455678888999999999988865 0
Q ss_pred HHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHH
Q 004269 435 LFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNT 514 (764)
Q Consensus 435 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 514 (764)
....++. ..+.-..+++.|...|.+.|++++|...+
T Consensus 271 ~e~~~G~------------------------------~h~~va~~l~nLa~ly~~~GKf~EA~~~~-------------- 306 (508)
T KOG1840|consen 271 REEVFGE------------------------------DHPAVAATLNNLAVLYYKQGKFAEAEEYC-------------- 306 (508)
T ss_pred HHHhcCC------------------------------CCHHHHHHHHHHHHHHhccCChHHHHHHH--------------
Confidence 1111110 00111234455666777777777777655
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHhhCChhHHHHHHHHHHHC---CCCCC----HHHHHHH
Q 004269 515 VLHSLVEAQESHRAMEIFKQMKTCGI-PPNAA-TYNIMIDCCSIIRCFKSASALVSMMVRD---GFYPQ----TMTYTAL 585 (764)
Q Consensus 515 li~~~~~~~~~~~A~~l~~~m~~~g~-~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~---g~~p~----~~~~~~l 585 (764)
+.|++++++. .|. .|... -++.+...|...+.+++|..+++...+. -+.++ ..+++.|
T Consensus 307 -----------e~Al~I~~~~--~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl 373 (508)
T KOG1840|consen 307 -----------ERALEIYEKL--LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANL 373 (508)
T ss_pred -----------HHHHHHHHHh--hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 3455555551 121 22222 3455566677788888888887665542 12222 4678899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHH
Q 004269 586 IKILLDYGDFDEALNLLDLVSLE----GIPHD---VLLYNTILKKACEKGRIDVIEFIIEQMHQN--KVQPD----PSTC 652 (764)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~----~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~----~~~~ 652 (764)
...|.+.|++++|.+++++.++. +.+.+ -..++.|...|.+.++.++|.++|.+...- -+.|+ ..+|
T Consensus 374 ~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~ 453 (508)
T KOG1840|consen 374 AELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTY 453 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHH
Confidence 99999999999999999988642 22222 346788888999999999898888876531 12233 3466
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 004269 653 HFVFSGYVNCGFHNSAMEALQVLS 676 (764)
Q Consensus 653 ~~ll~~~~~~g~~~~a~~~~~~~~ 676 (764)
.-|...|.+.|++++|.++.+.+.
T Consensus 454 ~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 454 LNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Confidence 667889999999999999988775
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.1e-05 Score=78.75 Aligned_cols=192 Identities=12% Similarity=0.128 Sum_probs=108.5
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004269 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDL 381 (764)
Q Consensus 302 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 381 (764)
.+.+.|+++.|+.-|-+.. ...-.+.+......|.+|..+++.+..++.. ..-|..+.+-|+..|+++.
T Consensus 715 hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHH
Confidence 3445566666665554432 1223455666677888888888887776543 3446677788888888888
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHH
Q 004269 382 AEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRI 461 (764)
Q Consensus 382 a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (764)
|+++|.+.. .++-.|..|.+.|+++.|.++-.+... .......|.+--.-+-..|.+.++.+++-.++.
T Consensus 784 ae~lf~e~~------~~~dai~my~k~~kw~da~kla~e~~~-~e~t~~~yiakaedldehgkf~eaeqlyiti~~---- 852 (1636)
T KOG3616|consen 784 AEELFTEAD------LFKDAIDMYGKAGKWEDAFKLAEECHG-PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE---- 852 (1636)
T ss_pred HHHHHHhcc------hhHHHHHHHhccccHHHHHHHHHHhcC-chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----
Confidence 888886543 356677888888888888887665432 222333343333333334444333333322221
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 004269 462 NAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFK 533 (764)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~ 533 (764)
| ..-|.+|-+.|..++.+++.++.....-..+.-.+..-|-..|+...|..-|-
T Consensus 853 -------------p-----~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 853 -------------P-----DKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred -------------c-----hHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 1 12345666666666666666554222222233334444445555555555443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.3e-05 Score=83.20 Aligned_cols=185 Identities=12% Similarity=-0.038 Sum_probs=138.8
Q ss_pred cchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 004269 68 RSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYF 147 (764)
Q Consensus 68 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 147 (764)
...|+..|-+..+..+. =...|..|...|....|...|.+.|....+.+ ..+...+..+...|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 56666665555444422 23358888888887778889999999999886 45777888999999999999999998655
Q ss_pred HhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCH
Q 004269 148 LGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI 227 (764)
Q Consensus 148 m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 227 (764)
..++.....-...|--.--.|.+.++...|..-|+...+..+. |...|..+..+|...|.+..|.+.|.+...-.|.+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 5443322111222333334467789999999999998886544 788999999999999999999999988877666666
Q ss_pred hhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 228 FSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
...-.....-+..|...+|...+..+..
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6666666677888999999999988765
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.4e-07 Score=96.16 Aligned_cols=249 Identities=11% Similarity=0.002 Sum_probs=185.7
Q ss_pred ccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhcccc--
Q 004269 4 PLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHA-- 81 (764)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-- 81 (764)
|.....++.+...|...|+++.|. .++.... |..-.+.|+...........+...|...+++++|+.+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~-~l~k~Al--~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAE-PLCKQAL--RILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHH-HHHHHHH--HHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 555667888999999999999999 7766554 44445566655555555666777889999999999999998642
Q ss_pred ---C--CCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHc-----Cc-cccH-HHHHHHHHHHHccCCHHHHHHHHHHHh
Q 004269 82 ---H--HSLGADDFFHILNYCARSPDPLFVMETWRMMEEK-----EI-GLNN-KCYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 82 ---~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 149 (764)
| .+-...+++.|..+|.+.|++++|...+++..+. |. .|.+ ..++.+...|+..+.+++|..++....
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 2 2233456888888899999999988888776542 21 2232 256677788899999999999988654
Q ss_pred hhcC--CCCC----hhhhHHHHHHHhccCCHHHHHHHHHHHhhc----CC--CC-ChhhHHHHHHHHHhhcChhHHHHHH
Q 004269 150 ERYG--IYPI----LPVYNSFLGACAKLHSMVHANLCLDLMDSR----MV--GK-NEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 150 ~~~~--~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~--~p-~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
+... ..++ ..+++.|...|-..|++.+|.++|+..... +- .+ ....++.+-..|.+.+..++|.++|
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 3221 1222 237899999999999999999999987653 11 22 2446777888899999999999888
Q ss_pred HHHHh---c----CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 217 EDYIK---H----YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 217 ~~~~~---~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.+... . .+....+|..|..+|...|+++.|.++.+.+..
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 87753 1 233356899999999999999999999998875
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=0.00026 Score=74.68 Aligned_cols=503 Identities=12% Similarity=0.037 Sum_probs=291.4
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHH---HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH
Q 004269 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA---LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175 (764)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 175 (764)
..++++.++.-+......+.+.++.++..+-.. |...|+.+++ .++..+.+ ..-|....+.+.+.-
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~e--s~i~Re~~~d~ilsl-------- 307 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEE--SLIPRENIEDAILSL-------- 307 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHh--hccccccHHHHHHHH--------
Confidence 346666777777777777766666666555443 3445666666 33333322 222332333332221
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.-.+.+++...+..|...|..+.-+....|+++.+.+.|++.....-.....|+.+-..|...|..-.|..+++.-..
T Consensus 308 --m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 308 --MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred --HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 112344444456678888888888899999999999999999988777888999999999999999999999988766
Q ss_pred hhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHH-ccCCHHHHHHHHHHHHH--CCC--CCCccc
Q 004269 256 LAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG-RTQNSGLAEQLMLQMQS--LGL--QPSSHT 330 (764)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~--~g~--~p~~~~ 330 (764)
....|+++ ..+-..-..|. +.+.+++++++-.+... .+. ......
T Consensus 386 ~~~~ps~~------------------------------s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 386 KSEQPSDI------------------------------SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred cccCCCcc------------------------------hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 33334431 12222223333 35667777777766665 111 123344
Q ss_pred HHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCc
Q 004269 331 YDGFIRAIVSD-----------RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPK 396 (764)
Q Consensus 331 ~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~ 396 (764)
|..+--+|... ....++.+.+++..+.+.. |+.+.-.+.--|+..++++.|.+...+...-+ +..
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~ 514 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAK 514 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHH
Confidence 55554444421 1235577778888776654 33443344556888899999999998887662 888
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCC
Q 004269 397 PFSAFLAACDTMDKPERAIKIFAKMRQ--KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQ 474 (764)
Q Consensus 397 ~~~~li~~~~~~~~~~~a~~l~~~m~~--~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (764)
.|..|.-.+.-.+++.+|+.+.+.... |. |......-++--...++.+++. +......++++... |
T Consensus 515 ~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l------~t~~~~L~~we~~~--~-- 582 (799)
T KOG4162|consen 515 AWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEAL------DTCIHKLALWEAEY--G-- 582 (799)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHH------HHHHHHHHHHHhhh--h--
Confidence 999999999999999999999887765 31 1000000000000112211111 11111111111000 0
Q ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHhcCC----CCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCC--CCHH--
Q 004269 475 HSHISMKNLLKALGAEGMIRELIQYFCDSKT----PLGT-PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIP--PNAA-- 545 (764)
Q Consensus 475 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~--p~~~-- 545 (764)
....++-....+.+..+.. ..+. .++..+..- +. -+.+.+..-.. |...-.. |+..
T Consensus 583 ------------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l-~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~ 647 (799)
T KOG4162|consen 583 ------------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL-VA-SQLKSAGSELK-LPSSTVLPGPDSLWY 647 (799)
T ss_pred ------------HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH-HH-hhhhhcccccc-cCcccccCCCCchHH
Confidence 0001111111222222111 1111 122222211 11 11111110000 2221122 2211
Q ss_pred ----HHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 004269 546 ----TYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH-DVLLYNTI 620 (764)
Q Consensus 546 ----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l 620 (764)
.+......+.+.+..++|...+.+..+. .......|.-....+...|..++|.+.|..... +.| ++.+..++
T Consensus 648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Al 724 (799)
T KOG4162|consen 648 LLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHH
Confidence 2334445566777888888777776654 234556666666777888999999999988774 345 45678888
Q ss_pred HHHHHHcCCHHHHHH--HHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 621 LKKACEKGRIDVIEF--IIEQMHQNKVQP-DPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 621 i~~~~~~g~~~~a~~--~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
...+.+.|+...|.. ++..+.+ +.| +...|..+-..+-+.|+.+.|.+.|+.--.
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 888889998877777 8888886 445 456777777788999999999998885433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.3e-07 Score=88.07 Aligned_cols=225 Identities=10% Similarity=-0.092 Sum_probs=132.4
Q ss_pred hCCcchHHHHHHhccccCC-CC--ChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHH
Q 004269 65 RGERSRASHLLLNLGHAHH-SL--GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEA 141 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 141 (764)
.+..+.++.-+..+..... .| ....|..+...+...|+.+.|...|++..+.. +.+...|+.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3455666666666664321 11 12346666667777788888888888887764 44667888888888888888888
Q ss_pred HHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh
Q 004269 142 SNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 142 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
...|++..+.+ +.+...|..+..++...|++++|.+.|+...+.. |+..........+...++.++|...++....
T Consensus 118 ~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888776532 2234566777777777888888888888877653 3332222222223445677788887766554
Q ss_pred cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHH
Q 004269 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301 (764)
Q Consensus 222 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 301 (764)
...++...+ .+...+ .|+...+ ..+..+.+.. ..+... ......+|..+..
T Consensus 194 ~~~~~~~~~-~~~~~~--lg~~~~~-~~~~~~~~~~-~~~~~l------------------------~~~~~ea~~~Lg~ 244 (296)
T PRK11189 194 KLDKEQWGW-NIVEFY--LGKISEE-TLMERLKAGA-TDNTEL------------------------AERLCETYFYLAK 244 (296)
T ss_pred hCCccccHH-HHHHHH--ccCCCHH-HHHHHHHhcC-CCcHHH------------------------HHHHHHHHHHHHH
Confidence 444443332 222222 3443333 2344443210 000000 0000146777777
Q ss_pred HHHccCCHHHHHHHHHHHHHCC
Q 004269 302 ACGRTQNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 302 ~~~~~~~~~~a~~~~~~m~~~g 323 (764)
.+.+.|++++|+..|++..+.+
T Consensus 245 ~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 245 YYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC
Confidence 7778888888888887777653
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-06 Score=86.99 Aligned_cols=201 Identities=9% Similarity=-0.025 Sum_probs=95.5
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccccc
Q 004269 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSS 275 (764)
Q Consensus 196 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (764)
|..+-..+...|+.+.|...|++..+..+.+..+|+.+...+...|+++.|...|+...+ +.|+.
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~------------- 131 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTY------------- 131 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC-------------
Confidence 333444444555555555555555554455555555555555555555555555555554 33332
Q ss_pred ccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 004269 276 RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 355 (764)
..+|..+...+...|++++|++.|+...+. .|+..........+...++.++|...+....
T Consensus 132 -----------------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 132 -----------------NYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred -----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 134445555555555555555555555543 2322211111111223445555555554433
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---------CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 004269 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---------NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLR 426 (764)
Q Consensus 356 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~ 426 (764)
... .|+... ..+... ..|+...+ ..+..+.... ...+|..+...+.+.|++++|+..|++..+.-.
T Consensus 193 ~~~-~~~~~~-~~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 EKL-DKEQWG-WNIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hhC-CccccH-HHHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 221 111111 112111 12332222 1222222100 234577778888888888888888888877334
Q ss_pred CCHHHHHHH
Q 004269 427 PDIRTYELL 435 (764)
Q Consensus 427 p~~~t~~~l 435 (764)
||.+-+...
T Consensus 268 ~~~~e~~~~ 276 (296)
T PRK11189 268 YNFVEHRYA 276 (296)
T ss_pred chHHHHHHH
Confidence 455555443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-06 Score=78.25 Aligned_cols=203 Identities=15% Similarity=-0.021 Sum_probs=171.8
Q ss_pred hhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHH
Q 004269 50 SISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMM 129 (764)
Q Consensus 50 ~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 129 (764)
........+...|...|+...|..-+++.++.+ |-+..++..+...|-+.|+.+.|.+-|++..+.. +-+-.+.|...
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG 110 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhh
Confidence 334455566788999999999999999999887 4455678888889999999999999999999875 45677889999
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcCh
Q 004269 130 QALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209 (764)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 209 (764)
..+|..|.+++|...|++........--..+|..+.-+..+.|+.+.|...|++..+.... ...+...+.+.....|++
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDY 189 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccc
Confidence 9999999999999999998764333333458888988999999999999999999886433 455777888889999999
Q ss_pred hHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 210 SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
-.|...++.......++..+.-..|..-...|+.+.+.+.=..+.+
T Consensus 190 ~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 190 APARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred hHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999988779999999999999999999999887777665
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.8e-06 Score=76.39 Aligned_cols=317 Identities=14% Similarity=0.054 Sum_probs=211.6
Q ss_pred HHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHH-HHHHHHHcc
Q 004269 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYL-LMMQALCKG 135 (764)
Q Consensus 57 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~ 135 (764)
..+..+.+..++.+|++++..-.+.. +.+....+.+..+|-...++..|.+.++++-.. .|...-|. .-..++-+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 34555678889999999999887765 336666777777888889999999999998776 45544443 235566788
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHH--HhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHH
Q 004269 136 GYLEEASNLIYFLGERYGIYPILPVYNSFLGA--CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVH 213 (764)
Q Consensus 136 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 213 (764)
+.+..|.++...|.+. |+...-..-+.+ .-..+++..+..+.++....| +..+.+..-....+.|+++.|.
T Consensus 92 ~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred cccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 9999999999988642 222111111222 234688888888888876432 4555555555566899999999
Q ss_pred HHHHHHHhc-CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCC--ccccch
Q 004269 214 EIWEDYIKH-YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN--ALPVMK 290 (764)
Q Consensus 214 ~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 290 (764)
+-|....+- .-....+||..+. ..+.|+.+.|++...++.++|++.....+.-+ . ....+..-..+ .+....
T Consensus 165 qkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm---~-tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGM---T-TEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccc---e-eccCchhcccchHHHHHHH
Confidence 999999873 3344556666554 44678999999999999999987654222110 0 00000000000 111111
Q ss_pred hhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 004269 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATL 369 (764)
Q Consensus 291 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 369 (764)
+ ...+|.-...+.+.++++.|.+.+..|.-+. -..|++|...+.-.- -.+++.+..+-+.-+...++- ...|+..+
T Consensus 240 l-~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANl 316 (459)
T KOG4340|consen 240 L-VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANL 316 (459)
T ss_pred H-HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHH
Confidence 1 2455655666788999999999999987543 456788876653221 245566777777777777664 46788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh
Q 004269 370 SVECSKALELDLAEALLDQISR 391 (764)
Q Consensus 370 i~~~~~~g~~~~a~~~~~~~~~ 391 (764)
+-.||++.-++.|-+++.+-..
T Consensus 317 LllyCKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENAH 338 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCcc
Confidence 9999999999999888776543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.00035 Score=73.89 Aligned_cols=303 Identities=12% Similarity=0.012 Sum_probs=177.0
Q ss_pred HHHHHHHhhcccchhhhhcc--ccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChh
Q 004269 11 QLIADSFCKSKFHKHERRNV--ANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGAD 88 (764)
Q Consensus 11 ~~~~~~~~~~g~~~~a~~~~--~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 88 (764)
..++..+.++.|+|=|.-.+ .+.+...|.+....+ .|+...... ..-....|.+++|..+|++-...+
T Consensus 761 ~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~e~eakv---AvLAieLgMlEeA~~lYr~ckR~D------ 830 (1416)
T KOG3617|consen 761 DNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGEEDEAKV---AVLAIELGMLEEALILYRQCKRYD------ 830 (1416)
T ss_pred HHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCcchhhHH---HHHHHHHhhHHHHHHHHHHHHHHH------
Confidence 34666677777777666222 222323333333322 222211111 222456788999999998876643
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhh----------hcC-----
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE----------RYG----- 153 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~~~----- 153 (764)
..|. .|-..|.+++|.++-+.--+-.. ..+|..-..-+-..++.+.|++.|++... .+.
T Consensus 831 LlNK---lyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 831 LLNK---LYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred HHHH---HHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 2333 34456889988887664333222 23555556666677888888888875311 000
Q ss_pred ---CCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhH
Q 004269 154 ---IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSL 230 (764)
Q Consensus 154 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 230 (764)
-..|...|..-..-+-..|+.+.|+.+|...++ |-++++..+-+|+.++|.++-++ ..|..+.
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAc 970 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE-----SGDKAAC 970 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh-----cccHHHH
Confidence 011222333333333345888888888877665 56677777889999999888774 4677788
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCC--
Q 004269 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN-- 308 (764)
Q Consensus 231 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-- 308 (764)
..|.+.|-..|++.+|..+|.+.. +|...|+.|-.++-
T Consensus 971 YhlaR~YEn~g~v~~Av~FfTrAq----------------------------------------afsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 971 YHLARMYENDGDVVKAVKFFTRAQ----------------------------------------AFSNAIRLCKENDMKD 1010 (1416)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHH----------------------------------------HHHHHHHHHHhcCHHH
Confidence 889999999999999999998875 33333433322222
Q ss_pred -------------HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHH--------HHHH--CCCCCCHHH
Q 004269 309 -------------SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLK--------IMQQ--NNLKPQDST 365 (764)
Q Consensus 309 -------------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~--~~~~~~~~~ 365 (764)
.-.|-..|++.- . -+.-.+-.|-+.|.+.+|+++-- +++. .....|+..
T Consensus 1011 ~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1011 RLANLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 222333333321 1 11122334556666666665421 1122 234456677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004269 366 IATLSVECSKALELDLAEALLDQISR 391 (764)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~~~~ 391 (764)
.+.-.+.++...++++|..++-...+
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 77778888888888888877765543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.5e-05 Score=74.02 Aligned_cols=272 Identities=11% Similarity=0.018 Sum_probs=189.7
Q ss_pred ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChh-hhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhH
Q 004269 118 IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILP-VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 118 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 196 (764)
++-|+.....+...+...|+.++|+-.|++..- +.|+.. ....-.-.+.+.|+++....+...+.... .-+..-|
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW 303 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence 455777888888888888888888888887642 223322 11122223456677777777666655431 1123333
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccc
Q 004269 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
-.-.+..-..++++.|..+-++.++..+.+...+-.-..++...++++.|.-.|+.... +.|..
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~r-------------- 367 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYR-------------- 367 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhh--------------
Confidence 33334445677888888888888877777777777777788889999999999988876 55554
Q ss_pred cCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHH-HHHH-hcCChhHHHHHHHHH
Q 004269 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI-RAIV-SDRGLRNGMEVLKIM 354 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~ 354 (764)
..+|.-|+.+|...|++.+|.-+-+..... ..-+..+.+.+- ..|. ....-++|..+++.-
T Consensus 368 ----------------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 368 ----------------LEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred ----------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 269999999999999999998777665432 122444554442 2222 223457788888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 004269 355 QQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPD 428 (764)
Q Consensus 355 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~ 428 (764)
.+..+. -....+.+...+...|..+++..+++...... |....+.|...+...+.+.+|++.|..... +.|+
T Consensus 431 L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr-~dP~ 503 (564)
T KOG1174|consen 431 LKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR-QDPK 503 (564)
T ss_pred hccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh-cCcc
Confidence 765432 23456778888999999999999999877654 888899999999999999999999988776 3343
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.6e-06 Score=74.06 Aligned_cols=189 Identities=8% Similarity=-0.099 Sum_probs=94.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCH
Q 004269 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 243 (764)
|.-+|.+.|+...|..-++...+..+. +..+|..+-..|-+.|+.+.|.+.|+..++..+.+..+.|....-+|..|++
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 344455555555555555555443211 3334444444455555555555555555555555555555555555555666
Q ss_pred HHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004269 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 244 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 323 (764)
++|...|++... .|.-+.. ..+|..+.-+..+.|+.+.|...|++-.+..
T Consensus 120 ~eA~q~F~~Al~---~P~Y~~~---------------------------s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 120 EEAMQQFERALA---DPAYGEP---------------------------SDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred HHHHHHHHHHHh---CCCCCCc---------------------------chhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 666665555554 2221100 1355555555556666666666665555532
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004269 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385 (764)
Q Consensus 324 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 385 (764)
. -...+.-.+.....+.|++..|..+++.....+. ++..+.-..|..--+.|+.+.+.+.
T Consensus 170 p-~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 170 P-QFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred c-CCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 1 1223444445555555566666655555555544 4444444444444455555444443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00064 Score=73.73 Aligned_cols=381 Identities=10% Similarity=0.014 Sum_probs=207.3
Q ss_pred hhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCC-CCC
Q 004269 8 TRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHH-SLG 86 (764)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 86 (764)
+.+..+...|+...++-.|. ..|+.+.+++|.. ...+-.....|++..+|+.|..+.-..-+... ..-
T Consensus 493 paf~~LG~iYrd~~Dm~RA~----------kCf~KAFeLDatd-aeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~ 561 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAK----------KCFDKAFELDATD-AEAAAASADTYAEESTWEEAFEICLRAAQKAPAFAC 561 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHhcCCchh-hhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHH
Confidence 44555555566655555555 5555556665553 33344456678888899988887333222210 111
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
...+....-.+...++...+..-|+...+.+ +.|...|..+..+|..+|.+..|.++|++... +.|+. .|...-.
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---LrP~s-~y~~fk~ 636 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL---LRPLS-KYGRFKE 636 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh---cCcHh-HHHHHHH
Confidence 1223334445667788888888888877765 45777899999999999999999999987743 33442 2332222
Q ss_pred --HHhccCCHHHHHHHHHHHhhc------CCCCChhhHHHHHHHHHhhcChhHHHHHHHHHH-------hcC-CCCHhhH
Q 004269 167 --ACAKLHSMVHANLCLDLMDSR------MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI-------KHY-SLSIFSL 230 (764)
Q Consensus 167 --~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~-~~~~~~~ 230 (764)
..+..|.+.+|+..+...... +..--..++..+...+...|-...+...++.-. .+. ..+...|
T Consensus 637 A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~W 716 (1238)
T KOG1127|consen 637 AVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQW 716 (1238)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 345578888988888776542 111122233333333333443333433333332 221 3333334
Q ss_pred HHHHHHhhccCCHH--H----HHHHH-HHHHHhhccCcchhccc--ccccccccccCCCccCCccccchhhhhhHHHHHH
Q 004269 231 RKFVWSFTRLRDLK--S----AYETL-QHMVALAMMGKLYINRT--SEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301 (764)
Q Consensus 231 ~~li~~~~~~g~~~--~----A~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 301 (764)
-.+-++|.-.-..+ . -..+| .+....+.-++...... -|+....... ....+|..|..
T Consensus 717 i~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~-------------~~~~~WyNLGi 783 (1238)
T KOG1127|consen 717 IVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA-------------IHMYPWYNLGI 783 (1238)
T ss_pred HHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh-------------hccchHHHHhH
Confidence 33333321111000 0 01111 11222222221100000 0110000000 00146666665
Q ss_pred HHHc-------cC-CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004269 302 ACGR-------TQ-NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373 (764)
Q Consensus 302 ~~~~-------~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 373 (764)
.|.+ .+ +-..|+..+.+.++. ..|...+...+......|++.-+...|-.-...... ...+|..+...+
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLV 860 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcccc-chhheeccceeE
Confidence 5543 11 224677777777654 334444444455556667888777777666555443 566777788888
Q ss_pred HhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHH
Q 004269 374 SKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAK 420 (764)
Q Consensus 374 ~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~ 420 (764)
.+..+++.|...|....... +...|--........|+.-+++.+|..
T Consensus 861 l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 861 LENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred EecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 88999999999999887653 566666555555667777778887776
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.7e-05 Score=79.80 Aligned_cols=260 Identities=9% Similarity=-0.053 Sum_probs=125.5
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHH---HHHHHhccCCHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHhhc
Q 004269 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNS---FLGACAKLHSMVHANLCLDLMDSRMVGKNE-VTYTELLKLAVWQK 207 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~ 207 (764)
+...|++++|.+++++..+.. +.+...+.. ........+....+.+.+.. .....|+. .....+...+...|
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDY--PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 345566666666666655432 222222221 11111123344444444433 11112222 22233334555666
Q ss_pred ChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccc
Q 004269 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALP 287 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (764)
++++|.+.++...+..+.+...+..+..++...|++++|...+++..+....+..
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~------------------------- 183 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSM------------------------- 183 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcc-------------------------
Confidence 6777777777666666666666677777777777777777777766652111110
Q ss_pred cchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCcccH-H--HHHHHHHhcCChhHHHHH--HHHH-HHCCC-
Q 004269 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL-QPSSHTY-D--GFIRAIVSDRGLRNGMEV--LKIM-QQNNL- 359 (764)
Q Consensus 288 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~-~--~ll~~~~~~~~~~~a~~~--~~~~-~~~~~- 359 (764)
.....|..+...+...|++++|..+|++...... .+..... + .++.-+...|....+.+. .... .....
T Consensus 184 ---~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~ 260 (355)
T cd05804 184 ---LRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD 260 (355)
T ss_pred ---hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc
Confidence 0002444566677777777777777777653221 1111111 1 122222233333322222 1111 11100
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---------ccHHHHH--HHHHhcCCHHHHHHHHHHHhc
Q 004269 360 KPQDSTIATLSVECSKALELDLAEALLDQISRCTNP---------KPFSAFL--AACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 360 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~li--~~~~~~~~~~~a~~l~~~m~~ 423 (764)
............++...|+.+.|..+++.+...... .+-..++ -++...|++++|.+++.....
T Consensus 261 ~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 261 HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 001111124555667777788888777776542100 1111222 335678888888888877654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.4e-05 Score=81.21 Aligned_cols=310 Identities=9% Similarity=-0.028 Sum_probs=182.0
Q ss_pred ccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchh---hhhhhHHHHHHHHHhhCCcchHHHHHHhccc
Q 004269 4 PLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEE---SISKATQMQIVDALCRGERSRASHLLLNLGH 80 (764)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~---~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~ 80 (764)
|+-...+..+...+...|+.+++. ..+.+. ....|. +....+ .....+...|++++|.++++....
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~~~~e~~~-~~a~~~~~~g~~~~A~~~~~~~l~ 71 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAA-AKAAAA---------AQALAARATERERAH-VEALSAWIAGDLPKALALLEQLLD 71 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHH-HHHHHH---------HHHhccCCCHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566677777887888888888875 222222 211121 111122 223446678999999999999887
Q ss_pred cCCCCChhcHHH---HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC
Q 004269 81 AHHSLGADDFFH---ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI 157 (764)
Q Consensus 81 ~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 157 (764)
.. |.+...+.. ........+....+.+.+.. .....+........+...+...|++++|...+++..+.. +.+
T Consensus 72 ~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~ 147 (355)
T cd05804 72 DY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDD 147 (355)
T ss_pred HC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCC
Confidence 65 334433331 12222224555555555554 111222234455566678889999999999999987643 345
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCC-CCh--hhHHHHHHHHHhhcChhHHHHHHHHHHhcCC--CCHhhH-H
Q 004269 158 LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KNE--VTYTELLKLAVWQKNLSAVHEIWEDYIKHYS--LSIFSL-R 231 (764)
Q Consensus 158 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~-~ 231 (764)
...+..+..++...|++++|...++........ |+. ..|..+...+...|++++|..+++......+ +..... +
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~ 227 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLD 227 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhh
Confidence 567888888999999999999999988765322 232 2345677788899999999999999864322 222211 1
Q ss_pred --HHHHHhhccCCHHHHHHHHHHHHHhhc-c-CcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccC
Q 004269 232 --KFVWSFTRLRDLKSAYETLQHMVALAM-M-GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ 307 (764)
Q Consensus 232 --~li~~~~~~g~~~~A~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 307 (764)
.++.-+...|....+.++ +.+..... . +.. .. .........++...|
T Consensus 228 ~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~-~~---------------------------~~~~~~~a~~~~~~~ 278 (355)
T cd05804 228 AASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDH-GL---------------------------AFNDLHAALALAGAG 278 (355)
T ss_pred HHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcc-cc---------------------------hHHHHHHHHHHhcCC
Confidence 333334444443333333 22221100 0 110 00 012235677788899
Q ss_pred CHHHHHHHHHHHHHCCCCC--C----cccHHHHHHH--HHhcCChhHHHHHHHHHHHC
Q 004269 308 NSGLAEQLMLQMQSLGLQP--S----SHTYDGFIRA--IVSDRGLRNGMEVLKIMQQN 357 (764)
Q Consensus 308 ~~~~a~~~~~~m~~~g~~p--~----~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~ 357 (764)
+.+.|..+++.+......+ . ..+-..++.+ +...|+.+.|.+.+......
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999887633221 0 0111222332 34677888888877776543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.1e-08 Score=59.99 Aligned_cols=32 Identities=38% Similarity=0.572 Sum_probs=15.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004269 574 GFYPQTMTYTALIKILLDYGDFDEALNLLDLV 605 (764)
Q Consensus 574 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 605 (764)
|+.||..+||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.6e-06 Score=83.49 Aligned_cols=253 Identities=14% Similarity=0.070 Sum_probs=167.1
Q ss_pred HHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHH
Q 004269 13 IADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH 92 (764)
Q Consensus 13 ~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (764)
-+..+.-.|.+..++ ..+. +.+..|+........+.+++...|+.+.++. ++.... +|.......
T Consensus 7 ~vrn~fy~G~Y~~~i----------~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~ 71 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCI----------NEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRL 71 (290)
T ss_dssp HHHHHHCTT-HHHHC----------HHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHH
T ss_pred HHHHHHHhhhHHHHH----------HHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHH
Confidence 345566778888887 2222 1233444445555566888999998776554 333333 466656655
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHcCcc-ccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhcc
Q 004269 93 ILNYCARSPDPLFVMETWRMMEEKEIG-LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 171 (764)
+...+....+-+.+..-++........ .+..........+...|++++|+++++.. .+.......+..|.+.
T Consensus 72 la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~ 144 (290)
T PF04733_consen 72 LAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKM 144 (290)
T ss_dssp HHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHT
T ss_pred HHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHc
Confidence 555555444555555555544433333 34444444556677899999999988643 2456677788999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh----hcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHH
Q 004269 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW----QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 172 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
++++.|.+.++.|.+. . +..+...+..++.. ...+..|.-+|+++...+++++.+.+.+..++...|++++|.
T Consensus 145 ~R~dlA~k~l~~~~~~--~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 145 NRPDLAEKELKNMQQI--D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp T-HHHHHHHHHHHHCC--S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred CCHHHHHHHHHHHHhc--C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999875 3 33444455554433 346899999999999889999999999999999999999999
Q ss_pred HHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCH-HHHHHHHHHHHHC
Q 004269 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNS-GLAEQLMLQMQSL 322 (764)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~ 322 (764)
+++.+..+ ..|+.+ .+...++-+....|+. +.+.+.+.++...
T Consensus 222 ~~L~~al~--~~~~~~------------------------------d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 222 ELLEEALE--KDPNDP------------------------------DTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHCC--C-CCHH------------------------------HHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHH--hccCCH------------------------------HHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99998765 334431 3566677777777777 6777888888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.2e-06 Score=82.89 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=46.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHH
Q 004269 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL-DLAEA 384 (764)
Q Consensus 306 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~ 384 (764)
.+.+..|..+|+++.+. ..++..+.+.+..+....|++++|.+++.+....+.. +..+...++.+....|+. +.+.+
T Consensus 180 ~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred chhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHH
Confidence 34566677777776543 3455556666666666667777777666666555433 445555555555555554 44555
Q ss_pred HHHHHhh
Q 004269 385 LLDQISR 391 (764)
Q Consensus 385 ~~~~~~~ 391 (764)
.+.++..
T Consensus 258 ~l~qL~~ 264 (290)
T PF04733_consen 258 YLSQLKQ 264 (290)
T ss_dssp HHHHCHH
T ss_pred HHHHHHH
Confidence 5555553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-07 Score=58.03 Aligned_cols=32 Identities=34% Similarity=0.654 Sum_probs=20.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004269 609 GIPHDVLLYNTILKKACEKGRIDVIEFIIEQM 640 (764)
Q Consensus 609 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 640 (764)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00057 Score=63.61 Aligned_cols=348 Identities=11% Similarity=0.068 Sum_probs=178.3
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccccc
Q 004269 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSS 275 (764)
Q Consensus 196 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (764)
+++++..+.+..+++.|.+++....+..+.+....+.|..+|....++..|-..++++.. ..|..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~------------- 77 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPEL------------- 77 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHH-------------
Confidence 334444444555555555555544444444555555555666666666666666666654 22221
Q ss_pred ccCCCccCCccccchhhhhhHH-HHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH--HhcCChhHHHHHHH
Q 004269 276 RLDIPIPLNALPVMKVLRWSFS-DVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI--VSDRGLRNGMEVLK 352 (764)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~ 352 (764)
.-|. --..++-+.+.+..|+.+...|... |+...-..-+.+. ...+++..+..+.+
T Consensus 78 ------------------~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLve 136 (459)
T KOG4340|consen 78 ------------------EQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVE 136 (459)
T ss_pred ------------------HHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHH
Confidence 1111 1123444556666777777666542 2222111112222 24567777777766
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCC
Q 004269 353 IMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT---NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPD 428 (764)
Q Consensus 353 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~ 428 (764)
+....| +..+.+.......+.|+.+.|.+-|+...+-+ ....||..+ ++.+.+++..|++...++.+ |++-.
T Consensus 137 Qlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~H 212 (459)
T KOG4340|consen 137 QLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQH 212 (459)
T ss_pred hccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcC
Confidence 654332 33444444445567788888888887776544 445565444 45566888888888888877 65422
Q ss_pred HHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCC--
Q 004269 429 IRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTP-- 506 (764)
Q Consensus 429 ~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 506 (764)
+..- .|...+..+ ...++.... |...++ ...+|.-...+.+.++.+.|.+.+-+|.++
T Consensus 213 PElg---------IGm~tegiD-vrsvgNt~~-------lh~Sal---~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE 272 (459)
T KOG4340|consen 213 PELG---------IGMTTEGID-VRSVGNTLV-------LHQSAL---VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE 272 (459)
T ss_pred CccC---------ccceeccCc-hhcccchHH-------HHHHHH---HHHhhhhhhhhhhcccHHHHHHHhhcCCCccc
Confidence 2110 000000000 000000000 000000 122333444567788999999988887443
Q ss_pred --CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCC-CCCHHHHH
Q 004269 507 --LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGF-YPQTMTYT 583 (764)
Q Consensus 507 --~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-~p~~~~~~ 583 (764)
.|.+|...+.-. -..+++.+..+-+.-+...+. --..||..++-.||+..-++.|-.++.+-...-+ -.+...|+
T Consensus 273 ~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~ 350 (459)
T KOG4340|consen 273 EELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD 350 (459)
T ss_pred ccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH
Confidence 344443332111 123445455554555555432 3457888888899998888888888755332211 12444455
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHH
Q 004269 584 ALIKILL-DYGDFDEALNLLDLVS 606 (764)
Q Consensus 584 ~li~~~~-~~g~~~~A~~~~~~m~ 606 (764)
. ++++. ..-..++|++-++.+.
T Consensus 351 L-LdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 351 L-LDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred H-HHHHHhCCCCHHHHHHHHHHHH
Confidence 3 33333 3345667766655543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00012 Score=69.36 Aligned_cols=305 Identities=12% Similarity=0.026 Sum_probs=194.0
Q ss_pred HHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHH---HHhhCCCChhHHHHHHHHHHHcCccccHH-HHHHHHHHH
Q 004269 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHIL---NYCARSPDPLFVMETWRMMEEKEIGLNNK-CYLLMMQAL 132 (764)
Q Consensus 57 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~ 132 (764)
.+...+..+|++..|+..|....+. |+..|.++. ..|...|+...|+.=+++.++. .||-. ....-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 3466778889999999998888764 444454444 4666778888888888888876 46643 223345567
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHH
Q 004269 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 212 (764)
.++|.++.|..=|+.+.+.+ |+. +....++.+.--.++-.. ....+..+...||...|
T Consensus 117 lK~Gele~A~~DF~~vl~~~---~s~---~~~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE---PSN---GLVLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNA 174 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC---CCc---chhHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhH
Confidence 88999999999998887542 321 122222222111111111 12233345556777777
Q ss_pred HHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhh
Q 004269 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
+.....+++-.+.|...|..-..+|...|++..|+.=+....+ +..+.
T Consensus 175 i~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask--Ls~Dn------------------------------ 222 (504)
T KOG0624|consen 175 IEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASK--LSQDN------------------------------ 222 (504)
T ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHh--ccccc------------------------------
Confidence 7777777777777777777777778888887777766666555 22222
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc----HHHH---------HHHHHhcCChhHHHHHHHHHHHCCC
Q 004269 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT----YDGF---------IRAIVSDRGLRNGMEVLKIMQQNNL 359 (764)
Q Consensus 293 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~ 359 (764)
+..+--+-..+..-|+.+.++...++-++. .||... |..| +......++|.++.+-.+...+...
T Consensus 223 Te~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 223 TEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 124444445555667777777766666653 455432 1111 1223456777778877777777665
Q ss_pred CCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 360 KPQDSTIA---TLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 360 ~~~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
......++ .+-.++...|++.+|++...++.... |+.++.--..+|.-...++.|+.-|+...+
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 53344443 45566777788999998888887653 455666667788888889999998888876
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-05 Score=81.34 Aligned_cols=222 Identities=9% Similarity=0.007 Sum_probs=169.0
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
...+.++|++.+|.-.|+.....+ |-+...|..|....+.+++=..|+..+.+-++.+ +-|....-.|...|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 455778999999999999988776 5567788888888888888888999999888886 55777888888899999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHH-----------HHHhccCCHHHHHHHHHHHhh-cCCCCChhhHHHHHHHHHhh
Q 004269 139 EEASNLIYFLGERYGIYPILPVYNSFL-----------GACAKLHSMVHANLCLDLMDS-RMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 139 ~~A~~~~~~m~~~~~~~~~~~~~~~li-----------~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~ 206 (764)
..|.+.|+...... | .|..+. +.+.....+....++|-++.. .+..+|......|--.|--.
T Consensus 370 ~~Al~~L~~Wi~~~---p---~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 370 NQALKMLDKWIRNK---P---KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred HHHHHHHHHHHHhC---c---cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 99999888775321 0 111111 122223334555666655544 34446777777777778889
Q ss_pred cChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCcc
Q 004269 207 KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (764)
|++++|...|+..+...|.|...||.|...++...+.++|+..|.+..+ ++|.-
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~y------------------------ 497 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGY------------------------ 497 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCe------------------------
Confidence 9999999999999988888999999999999999999999999999988 77764
Q ss_pred ccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004269 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 287 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 320 (764)
+.++..|.-+|...|.+++|.+.|-..+
T Consensus 498 ------VR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 498 ------VRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred ------eeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 1355567777888999999988887654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.4e-05 Score=79.49 Aligned_cols=222 Identities=9% Similarity=-0.042 Sum_probs=170.9
Q ss_pred HhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH
Q 004269 96 YCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175 (764)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 175 (764)
-+.+.|++..|.-+|+..++.+ +-+...|..|..+.+..++-..|+..+.+..+-+ +-|....-.|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHH
Confidence 3457889999999999998886 5578899999999999999999999999887543 345667778888899999999
Q ss_pred HHHHHHHHHhhcCCC--------CChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCC--CCHhhHHHHHHHhhccCCHHH
Q 004269 176 HANLCLDLMDSRMVG--------KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS--LSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~ 245 (764)
.|++.|+......++ ++...-.. +.+.....+....++|-.+....+ .|+.++..|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999887554211 00000000 122333344566677777766544 899999999999999999999
Q ss_pred HHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 004269 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325 (764)
Q Consensus 246 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 325 (764)
|...|+.... ++|++ ...||-|-..++...+.++|+..|++.++. +
T Consensus 449 aiDcf~~AL~--v~Pnd------------------------------~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--q 494 (579)
T KOG1125|consen 449 AVDCFEAALQ--VKPND------------------------------YLLWNRLGATLANGNRSEEAISAYNRALQL--Q 494 (579)
T ss_pred HHHHHHHHHh--cCCch------------------------------HHHHHHhhHHhcCCcccHHHHHHHHHHHhc--C
Confidence 9999999998 78887 369999999999999999999999999984 6
Q ss_pred CCcc-cHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 326 PSSH-TYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 326 p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
|+-+ ....|--.|...|.+++|...|-..+.
T Consensus 495 P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 495 PGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 7643 334455568899999999988876554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0003 Score=83.17 Aligned_cols=338 Identities=10% Similarity=-0.064 Sum_probs=211.3
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcC--c----ccc--HHHHHHHHH
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE--I----GLN--NKCYLLMMQ 130 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~----~~~--~~~~~~li~ 130 (764)
.......|+++.+...++.+.......++.........+...|+++.+..+++.....- . .+. ......+..
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 34455678888887877776432212223333344445556789999998888775431 0 111 112223334
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCC---ChhhhHHHHHHHhccCCHHHHHHHHHHHhhc----CC-CCChhhHHHHHHH
Q 004269 131 ALCKGGYLEEASNLIYFLGERYGIYP---ILPVYNSFLGACAKLHSMVHANLCLDLMDSR----MV-GKNEVTYTELLKL 202 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~ll~~ 202 (764)
.+...|++++|...+++..+...... .....+.+...+...|++++|...+++.... |. .+...++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 55678999999999998754211111 1124455666778899999999999887643 11 1112344555667
Q ss_pred HHhhcChhHHHHHHHHHHhc----CCC----CHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccc
Q 004269 203 AVWQKNLSAVHEIWEDYIKH----YSL----SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~----~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (764)
+...|+++.|...+++.... ..+ ....+..+...+...|+++.|...+.+...........
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~----------- 609 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ----------- 609 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch-----------
Confidence 78899999999998887652 111 23345556667778899999999998876531111000
Q ss_pred cccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CcccH-----HHHHHHHHhcCChhHHH
Q 004269 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP-SSHTY-----DGFIRAIVSDRGLRNGM 348 (764)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~-----~~ll~~~~~~~~~~~a~ 348 (764)
.....+..+...+...|+++.|...+.+........ ....+ ...+..+...|+.+.|.
T Consensus 610 ----------------~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 673 (903)
T PRK04841 610 ----------------QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAA 673 (903)
T ss_pred ----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHH
Confidence 001356667778889999999999998885421111 11111 11123345578899999
Q ss_pred HHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--------CCccHHHHHHHHHhcCCHHHHHHH
Q 004269 349 EVLKIMQQNNLKPQD---STIATLSVECSKALELDLAEALLDQISRCT--------NPKPFSAFLAACDTMDKPERAIKI 417 (764)
Q Consensus 349 ~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~l 417 (764)
..+............ .....+...+...|+.++|...+++..... ...+...+..++.+.|+.++|...
T Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~ 753 (903)
T PRK04841 674 NWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRV 753 (903)
T ss_pred HHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 887775542221111 113456677888999999999998876531 122445566778899999999999
Q ss_pred HHHHhc
Q 004269 418 FAKMRQ 423 (764)
Q Consensus 418 ~~~m~~ 423 (764)
+.+..+
T Consensus 754 L~~Al~ 759 (903)
T PRK04841 754 LLEALK 759 (903)
T ss_pred HHHHHH
Confidence 999877
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0019 Score=63.23 Aligned_cols=289 Identities=13% Similarity=0.057 Sum_probs=169.2
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004269 306 TQNSGLAEQLMLQMQSLG-LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEA 384 (764)
Q Consensus 306 ~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 384 (764)
.++...|...+--+.... ++-|+.....+.+.+...|+.++|...|+.....++- +..........+.+.|+.+....
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHH
Confidence 444444444444333332 3334556666777777777777777777776654321 11112223333455666666666
Q ss_pred HHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHH
Q 004269 385 LLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462 (764)
Q Consensus 385 ~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (764)
+...+-... +...|-.-........+++.|+.+-++-.+ +.|+.+- .+
T Consensus 288 L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~-~~~r~~~--al--------------------------- 337 (564)
T KOG1174|consen 288 LMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID-SEPRNHE--AL--------------------------- 337 (564)
T ss_pred HHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc-cCcccch--HH---------------------------
Confidence 655554331 233344434444555666667666665544 1121111 11
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc--CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 004269 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540 (764)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~ 540 (764)
-.--..+...++.++|.-.|+.. ..+-+..+|..++..|...|++.+|.-+-++..+. +
T Consensus 338 ------------------ilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~ 398 (564)
T KOG1174|consen 338 ------------------ILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-F 398 (564)
T ss_pred ------------------HhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-h
Confidence 11112344556777777777653 22345678888888888888888888776664443 2
Q ss_pred CCCHHHHHHHH-HHHH-hhCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004269 541 PPNAATYNIMI-DCCS-IIRCFKSASALVSMMVRDGFYPQ-TMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617 (764)
Q Consensus 541 ~p~~~t~~~ll-~~~~-~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 617 (764)
..+..+.+.+- ..|. ....-++|..+++.-.+. .|+ ....+.+...+...|+.+.+..++++... ..||....
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH 474 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLH 474 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHH
Confidence 33444444331 2222 223346778887776663 454 33456677777888888888888888773 47888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004269 618 NTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 618 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
+.|.+.+...+.+++|.+.|...+. +.|+..
T Consensus 475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~ 505 (564)
T KOG1174|consen 475 NHLGDIMRAQNEPQKAMEYYYKALR--QDPKSK 505 (564)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--cCccch
Confidence 8888888888888888888888774 556543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0014 Score=66.62 Aligned_cols=160 Identities=12% Similarity=0.039 Sum_probs=93.1
Q ss_pred HHHHHhcCcHHHHHHHHHhcCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhhCChh
Q 004269 484 LKALGAEGMIRELIQYFCDSKT-PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT-YNIMIDCCSIIRCFK 561 (764)
Q Consensus 484 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~ 561 (764)
-.+|.+.++++.+...|.+... ..+. ....+....++++.......-. .|.... .-.--+.+.+.|++.
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~-------~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTP-------DLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCH-------HHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHH
Confidence 3456666777777777766311 1110 1122333445555554444332 233311 111134566778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004269 562 SASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD-VLLYNTILKKACEKGRIDVIEFIIEQM 640 (764)
Q Consensus 562 ~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m 640 (764)
.|...|.++++.. +-|...|..-.-+|.+.|.+.+|++=.+...+. .|+ ...|.-=..++....+++.|.+.|++.
T Consensus 376 ~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 376 EAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888875 446778888888888888888888877776643 333 223333333444455678888888887
Q ss_pred HHCCCCCCHHHHHHHHH
Q 004269 641 HQNKVQPDPSTCHFVFS 657 (764)
Q Consensus 641 ~~~~~~p~~~~~~~ll~ 657 (764)
++ ..|+..-+..-+.
T Consensus 453 le--~dp~~~e~~~~~~ 467 (539)
T KOG0548|consen 453 LE--LDPSNAEAIDGYR 467 (539)
T ss_pred Hh--cCchhHHHHHHHH
Confidence 75 3465554443343
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0022 Score=65.23 Aligned_cols=106 Identities=12% Similarity=0.073 Sum_probs=72.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 004269 516 LHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ-TMTYTALIKILLDYGD 594 (764)
Q Consensus 516 i~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~g~ 594 (764)
.+.+.+.|++..|+..|.+++... +-|...|+.-.-+|.+.|.+..|+.=-+...+. .|+ ...|.-=..++.-..+
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHH
Confidence 456678899999999999999886 446778888888999999999998887777765 233 2233322333334457
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004269 595 FDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626 (764)
Q Consensus 595 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 626 (764)
++.|++.|++..+. .|+..-+..-+.-|..
T Consensus 442 ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 442 YDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 88888888887644 3544444444444444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0032 Score=63.90 Aligned_cols=162 Identities=12% Similarity=0.147 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004269 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP-NAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 588 (764)
.+|...|+.-.+..-.+.|..+|.+..+.+..+ +...+++++.-+| .++.+-|.++|+.=.+. +.-++.--...++-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHH
Confidence 467777777777788888888888888887777 6667777777666 47788888888765543 22344444677777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcC
Q 004269 589 LLDYGDFDEALNLLDLVSLEGIPHDV--LLYNTILKKACEKGRIDVIEFIIEQMHQN---KVQPDPSTCHFVFSGYVNCG 663 (764)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g 663 (764)
+...++-..|..+|++....++.||. .+|..+|.-=..-|+...+.++-+++... ...|....-..+++-|.-.+
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d 524 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILD 524 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcc
Confidence 88888888888888888877666653 57888888888888888888888777652 12222233344555555555
Q ss_pred ChHHHHHHHH
Q 004269 664 FHNSAMEALQ 673 (764)
Q Consensus 664 ~~~~a~~~~~ 673 (764)
++..-..-++
T Consensus 525 ~~~c~~~elk 534 (656)
T KOG1914|consen 525 LYPCSLDELK 534 (656)
T ss_pred cccccHHHHH
Confidence 5444333333
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0014 Score=77.56 Aligned_cols=344 Identities=13% Similarity=-0.001 Sum_probs=200.4
Q ss_pred hHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004269 54 ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 54 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 133 (764)
........+...|++.+|...+....... .-..............|++..+...++.+.......++.........+.
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 33344455666777777776655543211 1111122222333445777776666665532211122223334444556
Q ss_pred ccCCHHHHHHHHHHHhhhcCC-----CCCh--hhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCh----hhHHHHHHH
Q 004269 134 KGGYLEEASNLIYFLGERYGI-----YPIL--PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE----VTYTELLKL 202 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~~~~-----~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~ 202 (764)
..|++++|..+++...+...- .+.. .....+...+...|++++|...++.....-...+. .+.+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 789999999999876432111 1111 12222334456789999999999987763112221 234445556
Q ss_pred HHhhcChhHHHHHHHHHHhc---C-CC--CHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccc
Q 004269 203 AVWQKNLSAVHEIWEDYIKH---Y-SL--SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~---~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
+...|+++.|...++..... . .+ ...++..+...+...|+++.|...+++.....-.....
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~------------- 567 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE------------- 567 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc-------------
Confidence 67899999999999888752 1 11 13455666778889999999999998876631110000
Q ss_pred cCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCC--cccHHHHHHHHHhcCChhHHHHHHH
Q 004269 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG--LQPS--SHTYDGFIRAIVSDRGLRNGMEVLK 352 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~ 352 (764)
........+..+...+...|++++|...+.+..... ..+. ..++..+.......|+.+.|...+.
T Consensus 568 -----------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 568 -----------QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred -----------cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 000001244556667778899999999998876531 1122 2234445556678899999999988
Q ss_pred HHHHCC--CCCCHH--H-H-HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc------HHHHHHHHHhcCCHHHHHHHHHH
Q 004269 353 IMQQNN--LKPQDS--T-I-ATLSVECSKALELDLAEALLDQISRCTNPKP------FSAFLAACDTMDKPERAIKIFAK 420 (764)
Q Consensus 353 ~~~~~~--~~~~~~--~-~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~li~~~~~~~~~~~a~~l~~~ 420 (764)
...... ...... . . ...+..+...|+.+.|...+........... +..+..++...|++++|...+++
T Consensus 637 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 716 (903)
T PRK04841 637 RLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEE 716 (903)
T ss_pred HHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 875421 111110 1 1 1123445668899999999877654321111 34566678888999999988887
Q ss_pred Hhc
Q 004269 421 MRQ 423 (764)
Q Consensus 421 m~~ 423 (764)
...
T Consensus 717 al~ 719 (903)
T PRK04841 717 LNE 719 (903)
T ss_pred HHH
Confidence 765
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00015 Score=81.01 Aligned_cols=203 Identities=11% Similarity=0.046 Sum_probs=104.1
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHc-Cccc---cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEK-EIGL---NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 162 (764)
...|...+......++.+.|+++.++.+.. ++.- -.-.|.++++.--..|.-+...++|++..+-- ..-..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---d~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---DAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---chHHHHH
Confidence 334555555555555666666666655542 1111 11234444444444455555556666554310 1123455
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCC--CHhhHHHHHHHhhcc
Q 004269 163 SFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRL 240 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~ 240 (764)
.|...|.+.+.+++|.++|+.|.++ +.-....|...+..+.+.++-+.|..++.+.++..|- ........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 5556666666666666666666554 2234445555555555555555666666555554333 333444455555556
Q ss_pred CCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004269 241 RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 241 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 320 (764)
|+.+.+..+|+.......+-. ..|+..|+.-.++|+.+.+..+|++..
T Consensus 1614 GDaeRGRtlfEgll~ayPKRt--------------------------------DlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRT--------------------------------DLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred CCchhhHHHHHHHHhhCccch--------------------------------hHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 666666666665554211111 256666666666666666666666665
Q ss_pred HCCCC
Q 004269 321 SLGLQ 325 (764)
Q Consensus 321 ~~g~~ 325 (764)
..++.
T Consensus 1662 ~l~l~ 1666 (1710)
T KOG1070|consen 1662 ELKLS 1666 (1710)
T ss_pred hcCCC
Confidence 55443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00031 Score=78.66 Aligned_cols=225 Identities=9% Similarity=0.015 Sum_probs=168.3
Q ss_pred hhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC---hhhhHHHHHHHhccCCHHHHHH
Q 004269 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI---LPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 103 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~ 179 (764)
++.|.++ ++..... +.+...|-..+......++.++|++++++....-+++-. ...|.++++.-...|.-+...+
T Consensus 1441 pesaeDf-erlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1441 PESAEDF-ERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred CcCHHHH-HHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 3344444 3333332 456678999999999999999999999998753222111 2378888888888899999999
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhcc
Q 004269 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM 259 (764)
Q Consensus 180 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 259 (764)
+|++..+.- ---..|..|...|.+.+..++|.++++.|.+.+.....+|...+..+.+..+-+.|..++.+..+. -
T Consensus 1519 VFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--l 1594 (1710)
T KOG1070|consen 1519 VFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--L 1594 (1710)
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--c
Confidence 999998852 123467788888999999999999999999988888889999999999999999999999988872 2
Q ss_pred CcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 004269 260 GKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339 (764)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 339 (764)
|. ++. .....-.+..-.+.|+.+.+..+|+..+.... --...|+..+..-.
T Consensus 1595 Pk---------------------------~eH-v~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1595 PK---------------------------QEH-VEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEI 1645 (1710)
T ss_pred ch---------------------------hhh-HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHH
Confidence 21 111 02333344445678888999999988887532 24557888888888
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC
Q 004269 340 SDRGLRNGMEVLKIMQQNNLKPQ 362 (764)
Q Consensus 340 ~~~~~~~a~~~~~~~~~~~~~~~ 362 (764)
+.|+.+.++.+|++....++.|-
T Consensus 1646 k~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1646 KHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred ccCCHHHHHHHHHHHHhcCCChh
Confidence 88999999999999988887763
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0005 Score=68.51 Aligned_cols=168 Identities=7% Similarity=-0.036 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcC--hhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHH
Q 004269 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN--LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETL 250 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 250 (764)
++++++..++.+....++ +..+|+.--..+.+.+. .+.+..+++.+.+..+-+..+|+....++...|+++++++.+
T Consensus 87 ~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred hHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345555555555544322 22233333222333333 245566666666666777777777777777778888888888
Q ss_pred HHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHcc---CC----HHHHHHHHHHHHHCC
Q 004269 251 QHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT---QN----SGLAEQLMLQMQSLG 323 (764)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~----~~~a~~~~~~m~~~g 323 (764)
+++.+.+...+. +|+.....+.+. |. .+..++...++....
T Consensus 166 ~~~I~~d~~N~s--------------------------------AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~ 213 (320)
T PLN02789 166 HQLLEEDVRNNS--------------------------------AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN 213 (320)
T ss_pred HHHHHHCCCchh--------------------------------HHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC
Confidence 888774444332 666555444333 22 245666776666653
Q ss_pred CCCCcccHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004269 324 LQPSSHTYDGFIRAIVSD----RGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSK 375 (764)
Q Consensus 324 ~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 375 (764)
+-|...|+.+...+... +...+|.+.+.+..+.++. +...+..|++.|+.
T Consensus 214 -P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 214 -PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred -CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 23556777777777662 3345577777776665443 55667778877775
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.7e-05 Score=72.54 Aligned_cols=189 Identities=11% Similarity=-0.019 Sum_probs=123.6
Q ss_pred CChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH---HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh-hh
Q 004269 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN---KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL-PV 160 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~ 160 (764)
.....+..+...+...|+++.|...++++.... +.+. ..+..+..+|...|++++|...++.+.+..+-.|.. ..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 445567777777888888999999988887763 2222 456677788888899999999998887654322221 13
Q ss_pred hHHHHHHHhcc--------CCHHHHHHHHHHHhhcCCCCChh-hHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHH
Q 004269 161 YNSFLGACAKL--------HSMVHANLCLDLMDSRMVGKNEV-TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231 (764)
Q Consensus 161 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (764)
+..+..++.+. |+.+.|.+.|+.+... .|+.. .+..+.......+.. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~-----------------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRL-----------------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHH-----------------HHHHH
Confidence 44445555543 6778888888888765 33332 222221111000000 00112
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHH
Q 004269 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL 311 (764)
Q Consensus 232 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 311 (764)
.+...|.+.|+++.|...++...+. .|+.+.. ...+..+..++...|++++
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~---------------------------~~a~~~l~~~~~~lg~~~~ 221 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVEN--YPDTPAT---------------------------EEALARLVEAYLKLGLKDL 221 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHH--CCCCcch---------------------------HHHHHHHHHHHHHcCCHHH
Confidence 4556788999999999999999873 3322100 1488899999999999999
Q ss_pred HHHHHHHHHHC
Q 004269 312 AEQLMLQMQSL 322 (764)
Q Consensus 312 a~~~~~~m~~~ 322 (764)
|...++.+...
T Consensus 222 A~~~~~~l~~~ 232 (235)
T TIGR03302 222 AQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHhh
Confidence 99999988765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00066 Score=67.64 Aligned_cols=205 Identities=8% Similarity=-0.075 Sum_probs=128.4
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC-CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC--HH
Q 004269 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG-YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS--MV 175 (764)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~ 175 (764)
..+..+.|+.+.+++++.. +-+..+|+..-.++...| ++++++..++++.+.+ +.+..+|+.--..+.+.|+ .+
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHHcCchhhH
Confidence 4456667777777776653 233445555544555555 5677777777776543 2333455544444444444 25
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc---CC----HHHHHH
Q 004269 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL---RD----LKSAYE 248 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~A~~ 248 (764)
+++..++.+.+...+ +..+|+....++...|+++++.+.++++++..+.+..+|+....++.+. |. .+.+..
T Consensus 126 ~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 126 KELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 667777777765433 6667777777777777888888888888877777777777766665544 22 245666
Q ss_pred HHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHcc----CCHHHHHHHHHHHHHCCC
Q 004269 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT----QNSGLAEQLMLQMQSLGL 324 (764)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~ 324 (764)
...++.+ ..|+. ..+|+-+...+... ++..+|.+.+.+....+
T Consensus 205 y~~~aI~--~~P~N------------------------------~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~- 251 (320)
T PLN02789 205 YTIDAIL--ANPRN------------------------------ESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD- 251 (320)
T ss_pred HHHHHHH--hCCCC------------------------------cCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-
Confidence 6666666 45544 15888888877763 34466888888876643
Q ss_pred CCCcccHHHHHHHHHh
Q 004269 325 QPSSHTYDGFIRAIVS 340 (764)
Q Consensus 325 ~p~~~~~~~ll~~~~~ 340 (764)
..+...+..|+..++.
T Consensus 252 ~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 252 SNHVFALSDLLDLLCE 267 (320)
T ss_pred CCcHHHHHHHHHHHHh
Confidence 2255667777777764
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.012 Score=63.68 Aligned_cols=528 Identities=12% Similarity=0.040 Sum_probs=266.7
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhh--CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCA--RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 136 (764)
|-.....+++..|+....++.+.. |+. .|..++.++. +.|..++|..+++.....+.. |..+...+-..|-..|
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLG 91 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHh
Confidence 455677889999999999988764 333 4666666655 779999999888887776644 8889999999999999
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcC--------
Q 004269 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN-------- 208 (764)
Q Consensus 137 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-------- 208 (764)
+.++|..++++..++ .|+......+..+|+|.+++.+-.++--+|-+. ++...+.+=++++.....-.
T Consensus 92 ~~d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 92 KLDEAVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred hhhHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccc
Confidence 999999999998765 467777778888999988876544443333332 33355555555555443211
Q ss_pred --hhHHHHHHHHHHhcC--CCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCC
Q 004269 209 --LSAVHEIWEDYIKHY--SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284 (764)
Q Consensus 209 --~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (764)
+..|.+..+.+.+.. ..+..-.-.....+...|+.++|..++..-......+-.
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~---------------------- 225 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSAN---------------------- 225 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccc----------------------
Confidence 224555555555422 112222222334455778889998888433221121111
Q ss_pred ccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHH----HHh------------cCChhHHH
Q 004269 285 ALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA----IVS------------DRGLRNGM 348 (764)
Q Consensus 285 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~----~~~------------~~~~~~a~ 348 (764)
...-+--+.-+...+++.+..++-.++...| +|. |...+.. .-. .+..+...
T Consensus 226 --------~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ 293 (932)
T KOG2053|consen 226 --------LYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECI 293 (932)
T ss_pred --------hHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHH
Confidence 0233445566777788888888888888775 232 2222221 111 11122222
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHH-HHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 004269 349 EVLKIMQQNNLKPQDSTIATLSVECS---KALELDLAEAL-LDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQK 424 (764)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~a~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~ 424 (764)
+...+...... ...|-+=+.++. .-|+.+++... |+..-. -..|..=+..|...=..+.-..++.....
T Consensus 294 ek~~~~i~~~~---Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~---kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~- 366 (932)
T KOG2053|consen 294 EKAQKNIGSKS---RGPYLARLELDKRYKLIGDSEEMLSYYFKKFGD---KPCCAIDLNHYLGHLNIDQLKSLMSKLVL- 366 (932)
T ss_pred HHHHHhhcccc---cCcHHHHHHHHHHhcccCChHHHHHHHHHHhCC---CcHhHhhHHHhhccCCHHHHHHHHHHhhc-
Confidence 22222222211 112222222222 33666664433 333332 22222222333322222332333322222
Q ss_pred CCCCHH---------HHHHHH-HHhcCCCCchhhchhhhhhhhHHHHHHHHH-H-HHHCCCCccH---------HHHHHH
Q 004269 425 LRPDIR---------TYELLF-SLFGNVNAPYEEGNMFSQVDSAKRINAIEM-D-MARNNIQHSH---------ISMKNL 483 (764)
Q Consensus 425 ~~p~~~---------t~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~---------~~~~~l 483 (764)
..++.. +.+..+ ..++..-... +.. ......+....++ . -...++-|+. -+.+.|
T Consensus 367 ~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~-ad~---i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~L 442 (932)
T KOG2053|consen 367 ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLP-ADS---ILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHL 442 (932)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHhhccccCC-hHH---HHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHH
Confidence 111111 111111 1111100000 000 0000001000000 0 1112223332 233568
Q ss_pred HHHHHhcCcHH---HHHHHHHhc--CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhC
Q 004269 484 LKALGAEGMIR---ELIQYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558 (764)
Q Consensus 484 ~~~~~~~~~~~---~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 558 (764)
++.+.+.++.. +|+-+++.. ..+-|..+--.+|..|+-.|-+..|.++|+.|--..|.-|..-|.. ..-+...|
T Consensus 443 id~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g 521 (932)
T KOG2053|consen 443 IDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSG 521 (932)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcc
Confidence 88888888766 455555442 2223344445678888888999999999999877777777665533 33445566
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH---HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004269 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNL---LDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635 (764)
Q Consensus 559 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~---~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 635 (764)
++..+...++...+.--.--..+-..+..+| +.|.+....++ =+++..+--+--..+-+..++..+..++.+.-..
T Consensus 522 ~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~ 600 (932)
T KOG2053|consen 522 RSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLK 600 (932)
T ss_pred cchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 7666666665544320000011112233333 33444333332 2333211111122234555666666677766666
Q ss_pred HHHHHH
Q 004269 636 IIEQMH 641 (764)
Q Consensus 636 ~~~~m~ 641 (764)
.++.|.
T Consensus 601 ~~~~~~ 606 (932)
T KOG2053|consen 601 LLESMK 606 (932)
T ss_pred HHhccc
Confidence 666655
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00015 Score=75.95 Aligned_cols=233 Identities=10% Similarity=0.034 Sum_probs=175.3
Q ss_pred CCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHH
Q 004269 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234 (764)
Q Consensus 155 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 234 (764)
+|-...-..+...+...|-..+|..+|++... |..++-+|...|+..+|..+..+..+ .+||+..|-.+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 34334445677778888999999999987653 56678888899999999998888877 788999999998
Q ss_pred HHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHH
Q 004269 235 WSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQ 314 (764)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 314 (764)
+.....--+++|.++++....+ +-..+......+++++++.+
T Consensus 465 Dv~~d~s~yEkawElsn~~sar--------------------------------------A~r~~~~~~~~~~~fs~~~~ 506 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR--------------------------------------AQRSLALLILSNKDFSEADK 506 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH--------------------------------------HHHhhccccccchhHHHHHH
Confidence 8888877888888888876552 11112222334788999999
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-
Q 004269 315 LMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT- 393 (764)
Q Consensus 315 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~- 393 (764)
.|+.-.+.+ ..-..+|-.+-.+..+.++++.+.+.|.......+. +...+|.+-.+|.+.|+-.+|...+.+..+..
T Consensus 507 hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 507 HLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 998877643 223456666666777889999999999888775433 45679999999999999999999999988765
Q ss_pred -CCccHHHHHHHHHhcCCHHHHHHHHHHHhc--cCCCCHHHHHHHHH
Q 004269 394 -NPKPFSAFLAACDTMDKPERAIKIFAKMRQ--KLRPDIRTYELLFS 437 (764)
Q Consensus 394 -~~~~~~~li~~~~~~~~~~~a~~l~~~m~~--~~~p~~~t~~~ll~ 437 (764)
+...|...+....+-|.+++|++.+.++.. ....|......++.
T Consensus 585 ~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~ 631 (777)
T KOG1128|consen 585 QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVR 631 (777)
T ss_pred CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHH
Confidence 666788888889999999999999999877 22235544444443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0084 Score=61.04 Aligned_cols=150 Identities=13% Similarity=0.086 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004269 525 SHRAMEIFKQMKTCG-IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYP-QTMTYTALIKILLDYGDFDEALNLL 602 (764)
Q Consensus 525 ~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 602 (764)
.+...+.+++....- +.| ..+|...++...+..-++.|..+|.++.+.+..+ .+.++++++.-||. ++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 455666666665542 333 3567888888888899999999999999998777 88889999988876 6789999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 603 DLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD--PSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 603 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
+--... +..++.--...++-+...++-..|..+|++....++.|| ..+|..+|.-=+.-|+.+.+.++-+++..
T Consensus 425 eLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 425 ELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 875532 344555667788888899999999999999998867665 46899999888899999999988776654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.6e-05 Score=77.31 Aligned_cols=214 Identities=10% Similarity=0.028 Sum_probs=114.6
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhc
Q 004269 91 FHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170 (764)
Q Consensus 91 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 170 (764)
..+...+...|-..+|..++++.. .|.-+|..|+..|+.++|..+..+-.++ +|+...|-.+.+..-.
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhhccC
Confidence 334445555556666666665442 3445555566666666666655544432 3555555555555555
Q ss_pred cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHH
Q 004269 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETL 250 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 250 (764)
.--+++|.++++....+ +-..+-....+.++++++.+.|+.-.+..+....+|-.+..++.+.+++..|.+.|
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 55556666665543322 11111111223455666666666555555555566666666666666666666666
Q ss_pred HHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc
Q 004269 251 QHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330 (764)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 330 (764)
..... ..|+. ..+||++-.+|.+.++-.+|...+.+..+.+. -+-..
T Consensus 543 ~rcvt--L~Pd~------------------------------~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~i 589 (777)
T KOG1128|consen 543 HRCVT--LEPDN------------------------------AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQI 589 (777)
T ss_pred HHHhh--cCCCc------------------------------hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCee
Confidence 66555 44544 24666666666666666666666666665542 23333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 331 YDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 331 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
|-.-+....+.|.+++|.+.+..+..
T Consensus 590 WENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 590 WENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred eechhhhhhhcccHHHHHHHHHHHHH
Confidence 33334445566666666666655543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00039 Score=77.29 Aligned_cols=146 Identities=10% Similarity=0.040 Sum_probs=85.8
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN-KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 165 (764)
...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+...++...+..+ . ++
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~----------------~l 90 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N----------------LI 90 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h----------------hh
Confidence 344666666666666777777776655544 2322 2222222244445554444333 1 22
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHH
Q 004269 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 245 (764)
.......++.-...+...|... .-+...+..+..+|.+.|+.+++.++|+++++-.+.|+.+.|.+...|... ++++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 2222233333333333333332 123346666777788888888888888888887788888888888888888 8888
Q ss_pred HHHHHHHHHH
Q 004269 246 AYETLQHMVA 255 (764)
Q Consensus 246 A~~~~~~~~~ 255 (764)
|..++.+..+
T Consensus 168 A~~m~~KAV~ 177 (906)
T PRK14720 168 AITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHH
Confidence 8877777665
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00037 Score=67.31 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 004269 619 TILKKACEKGRIDVIEFIIEQMHQNKV-QP-DPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 619 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
.+...+.+.|++++|+..+++..+..- .| ....+..+..++...|++++|..+++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345567888999999999999886421 12 2456777788999999999999998877653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.025 Score=61.40 Aligned_cols=222 Identities=12% Similarity=0.028 Sum_probs=108.6
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHH--HhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhH
Q 004269 134 KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA--CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
..+++..|....+.+..+. |+. .|...+.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...+++++
T Consensus 21 d~~qfkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3445555555555554443 221 22223332 23445555555555554443333 55555555555555566666
Q ss_pred HHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchh
Q 004269 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
|..+|++..+.+|. ......+..+|.+.+.+.+-.++=-++-+ ..|..+ .
T Consensus 96 ~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK--~~pk~~---------------------------y 145 (932)
T KOG2053|consen 96 AVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYK--NFPKRA---------------------------Y 145 (932)
T ss_pred HHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCccc---------------------------c
Confidence 66666555554443 44444445555555544333222222222 112110 0
Q ss_pred hhhhHHHHHHHHHccC-C---------HHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhcCChhHHHHHHH-HHHHCCC
Q 004269 292 LRWSFSDVIHACGRTQ-N---------SGLAEQLMLQMQSLGLQP-SSHTYDGFIRAIVSDRGLRNGMEVLK-IMQQNNL 359 (764)
Q Consensus 292 ~~~~~~~li~~~~~~~-~---------~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~ 359 (764)
..| ++++.+.+.. . ...|.+.++.+.+.+-+. +..-...-+..+...|.+++|.+++. ...+.-.
T Consensus 146 --yfW-sV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~ 222 (932)
T KOG2053|consen 146 --YFW-SVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLT 222 (932)
T ss_pred --hHH-HHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc
Confidence 122 2222222211 1 123455555555543111 11111122233446788999999883 3333334
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 004269 360 KPQDSTIATLSVECSKALELDLAEALLDQISRCT 393 (764)
Q Consensus 360 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 393 (764)
.-+...-+.-++.+...+++.+..++-.++...+
T Consensus 223 ~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 223 SANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred ccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 4455555677788888899888888888877764
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.2e-06 Score=51.78 Aligned_cols=33 Identities=42% Similarity=0.728 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 004269 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~ 543 (764)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0011 Score=60.50 Aligned_cols=157 Identities=11% Similarity=0.012 Sum_probs=117.8
Q ss_pred CChhHHHHHHHHHHH---cC-ccccHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH
Q 004269 101 PDPLFVMETWRMMEE---KE-IGLNNK-CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175 (764)
Q Consensus 101 ~~~~~a~~~~~~m~~---~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 175 (764)
.++++..++++.+.. .| ..++.+ .|..++-+....|+.+.|...++++..+++-.+.+.-...+. +-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~--lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML--LEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH--HHHhhchh
Confidence 567777788877764 23 445554 567777788889999999999999876653333333222221 33468999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
+|+++|+.+.+.. +.|.+++-.=+...-..|.--.|.+-+....+.+..|..+|.-+...|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999998876 346777776666666778777888888888888999999999999999999999999999999876
Q ss_pred hhccCcc
Q 004269 256 LAMMGKL 262 (764)
Q Consensus 256 ~~~~~~~ 262 (764)
+.|..
T Consensus 183 --~~P~n 187 (289)
T KOG3060|consen 183 --IQPFN 187 (289)
T ss_pred --cCCCc
Confidence 55554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00034 Score=64.44 Aligned_cols=57 Identities=7% Similarity=0.011 Sum_probs=25.3
Q ss_pred HHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 199 LLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 199 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
..+.....|++..|...+.+.....++|..+|+.+.-+|.+.|+++.|..-|.+..+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~ 162 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE 162 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444444444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.001 Score=61.59 Aligned_cols=119 Identities=8% Similarity=-0.004 Sum_probs=65.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHH-hhccCC--HHHHH
Q 004269 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS-FTRLRD--LKSAY 247 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A~ 247 (764)
.++.+++...++...+..+ .|...|..+...|...|+++.|...++...+..+.+...+..+..+ +...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4444555555555444332 2455555555556666666666666666555555555555555554 344454 36666
Q ss_pred HHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
+++++..+ ..|+. ..++..+...+.+.|++++|+..|+++.+.
T Consensus 131 ~~l~~al~--~dP~~------------------------------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALA--LDANE------------------------------VTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHH--hCCCC------------------------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666665 33333 135555666666666666666666666554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0013 Score=60.70 Aligned_cols=156 Identities=16% Similarity=0.111 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhC
Q 004269 481 KNLLKALGAEGMIRELIQYFCDSKT--PLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR 558 (764)
Q Consensus 481 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 558 (764)
..+-..+.-.|+-+....+..+... ..|....+..+....+.|++.+|+..|.+..... ++|..+++.+--+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 3344445555555555555544322 2233344445666666666666666666665543 455566666666666666
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 004269 559 CFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIE 638 (764)
Q Consensus 559 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 638 (764)
+.+.|..-|.+..+.- .-++..+|.|...|.-.|+.+.|..++......+ .-|..+-..|.-.....|++++|+.+..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 6666666666666541 1234445555556666666666666666665443 2245555555555666666666666554
Q ss_pred H
Q 004269 639 Q 639 (764)
Q Consensus 639 ~ 639 (764)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 4
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00054 Score=63.37 Aligned_cols=157 Identities=10% Similarity=-0.023 Sum_probs=115.4
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
+..|...|+++.+..-.+.+.. +. ..+...++.+++...++...+.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4567788888876444322211 10 01223566777888888877775 66888999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHH-hccCC--HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHH
Q 004269 139 EEASNLIYFLGERYGIYPILPVYNSFLGAC-AKLHS--MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI 215 (764)
Q Consensus 139 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 215 (764)
++|...|++..... +.+...+..+..++ .+.|+ .++|.+++++..+..+. +..++..+...+...|++++|...
T Consensus 90 ~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999887543 33556777777764 66676 59999999999887544 667778888888899999999999
Q ss_pred HHHHHhcCCCCHhhHH
Q 004269 216 WEDYIKHYSLSIFSLR 231 (764)
Q Consensus 216 ~~~~~~~~~~~~~~~~ 231 (764)
|+.+.+..+|+..-+.
T Consensus 167 ~~~aL~l~~~~~~r~~ 182 (198)
T PRK10370 167 WQKVLDLNSPRVNRTQ 182 (198)
T ss_pred HHHHHhhCCCCccHHH
Confidence 9999988777765543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.5e-06 Score=50.93 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=28.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 328 (764)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7888888888888888888888888888888873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0013 Score=72.66 Aligned_cols=219 Identities=13% Similarity=0.071 Sum_probs=151.3
Q ss_pred cHHHHHHHHHHHHccCCHHHH-HHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEA-SNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL 199 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 199 (764)
++...+.+=.+.+.-|..++| .+++.+..+ ++....+-....+++.-+....+. ...+...+..|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L 92 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ-------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLV 92 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH-------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHH
Confidence 555556666667777777777 445554431 333333333333333222222222 34467788888
Q ss_pred HHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCC
Q 004269 200 LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDI 279 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (764)
.......|.+++|..+++.+.+..|.+......+..++.+.+++++|...+++... ..|+.
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~----------------- 153 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSS----------------- 153 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCC-----------------
Confidence 88888899999999999999888888888999999999999999999999998887 45554
Q ss_pred CccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 004269 280 PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359 (764)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 359 (764)
....+.+..++.+.|++++|..+|++....+ .-+..++..+-.++-..|+.++|...|+...+.-
T Consensus 154 -------------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~- 218 (694)
T PRK15179 154 -------------AREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI- 218 (694)
T ss_pred -------------HHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-
Confidence 2477788888889999999999999998743 2235678888888888999999999999888753
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 004269 360 KPQDSTIATLSVECSKALELDLAEALLDQISRCT 393 (764)
Q Consensus 360 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 393 (764)
.+....|+.++ +++..-..+++.+...+
T Consensus 219 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 246 (694)
T PRK15179 219 GDGARKLTRRL------VDLNADLAALRRLGVEG 246 (694)
T ss_pred CcchHHHHHHH------HHHHHHHHHHHHcCccc
Confidence 22344444433 34455556666665443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0027 Score=70.16 Aligned_cols=209 Identities=9% Similarity=-0.053 Sum_probs=149.1
Q ss_pred HHhhCCCChhHH-HHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC
Q 004269 95 NYCARSPDPLFV-METWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS 173 (764)
Q Consensus 95 ~~~~~~~~~~~a-~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 173 (764)
.+.+..|..++| ++++.+.. .++...+......++.--+..... ..+.+...+-.|.....+.|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~La~i~~~~g~ 101 (694)
T PRK15179 36 AALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVR--RYPHTELFQVLVARALEAAHR 101 (694)
T ss_pred HHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHH--hccccHHHHHHHHHHHHHcCC
Confidence 345556666654 45555443 223333333333333332222222 224457788899999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHH
Q 004269 174 MVHANLCLDLMDSRMVGKNE-VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQH 252 (764)
Q Consensus 174 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 252 (764)
+++|+.+++...+. .||. .....+...+.+.+.+++|....++.....+.+......+..++...|++++|..+|++
T Consensus 102 ~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~ 179 (694)
T PRK15179 102 SDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFER 179 (694)
T ss_pred cHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 99999999999985 5554 46677778889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHH
Q 004269 253 MVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYD 332 (764)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 332 (764)
+.. ..|+. ..++..+...+...|+.++|...|++..+.. .|-...|+
T Consensus 180 ~~~--~~p~~------------------------------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~ 226 (694)
T PRK15179 180 LSR--QHPEF------------------------------ENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLT 226 (694)
T ss_pred HHh--cCCCc------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHH
Confidence 997 33332 1588899999999999999999999998752 33444454
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC
Q 004269 333 GFIRAIVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 333 ~ll~~~~~~~~~~~a~~~~~~~~~~~ 358 (764)
..+ +++..-..+++.+.-.+
T Consensus 227 ~~~------~~~~~~~~~~~~~~~~~ 246 (694)
T PRK15179 227 RRL------VDLNADLAALRRLGVEG 246 (694)
T ss_pred HHH------HHHHHHHHHHHHcCccc
Confidence 443 23444445555554433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.018 Score=55.20 Aligned_cols=201 Identities=14% Similarity=0.039 Sum_probs=124.9
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccccc
Q 004269 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSS 275 (764)
Q Consensus 196 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (764)
...+-+.+...|++..|+.-|...+++.+.+-.++-.-...|...|+...|+.=|....+ ++|+-.-
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~----------- 107 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMA----------- 107 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHH-----------
Confidence 344555566667777777777777666666666666666777777777777777777776 5555310
Q ss_pred ccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc----------------HHHHHHHHH
Q 004269 276 RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT----------------YDGFIRAIV 339 (764)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----------------~~~ll~~~~ 339 (764)
+----...+.+.|.++.|..=|+..++.. |+..+ ....+..+.
T Consensus 108 -------------------ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~ 166 (504)
T KOG0624|consen 108 -------------------ARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSAS 166 (504)
T ss_pred -------------------HHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 00011234567788888888888777653 22111 122334455
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHH
Q 004269 340 SDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKI 417 (764)
Q Consensus 340 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l 417 (764)
..|+...|......+++..+ .|...+..-..+|...|++..|+.=+....+.. ++..+--+-..+-.-|+.+.++..
T Consensus 167 ~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred cCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 66788888888887777543 255666677778888888888877666665443 444455555566667777777666
Q ss_pred HHHHhccCCCCHHHH
Q 004269 418 FAKMRQKLRPDIRTY 432 (764)
Q Consensus 418 ~~~m~~~~~p~~~t~ 432 (764)
.++-.+ +.||....
T Consensus 246 iRECLK-ldpdHK~C 259 (504)
T KOG0624|consen 246 IRECLK-LDPDHKLC 259 (504)
T ss_pred HHHHHc-cCcchhhH
Confidence 665554 55665443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.4e-05 Score=49.76 Aligned_cols=33 Identities=33% Similarity=0.665 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 004269 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPP 542 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p 542 (764)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777666
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0057 Score=61.72 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=95.3
Q ss_pred HhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHH
Q 004269 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQL 315 (764)
Q Consensus 236 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 315 (764)
.+...|+.+.|+..++.+.. ..|+. .+.+......+...++.++|.+.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N------------------------------~~~~~~~~~i~~~~nk~~~A~e~ 362 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDN------------------------------PYYLELAGDILLEANKAKEAIER 362 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHHHHcCChHHHHHH
Confidence 34456777777777777665 44544 14556666777777777777777
Q ss_pred HHHHHHCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 004269 316 MLQMQSLGLQPSSH-TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTN 394 (764)
Q Consensus 316 ~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 394 (764)
++.+... .|+.. ..-.+-.++.+.|++.+|..+++........ |+..|..|..+|...|+..++.....
T Consensus 363 ~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~A------- 432 (484)
T COG4783 363 LKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARA------- 432 (484)
T ss_pred HHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHH-------
Confidence 7777764 45532 3334456677777777777777777766544 67777777777777777666654433
Q ss_pred CccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHH
Q 004269 395 PKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRT 431 (764)
Q Consensus 395 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t 431 (764)
.+|...|+++.|...+....+.++++..+
T Consensus 433 --------E~~~~~G~~~~A~~~l~~A~~~~~~~~~~ 461 (484)
T COG4783 433 --------EGYALAGRLEQAIIFLMRASQQVKLGFPD 461 (484)
T ss_pred --------HHHHhCCCHHHHHHHHHHHHHhccCCcHH
Confidence 34556777777777777776633444433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0021 Score=71.64 Aligned_cols=234 Identities=9% Similarity=-0.065 Sum_probs=112.6
Q ss_pred hhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhc-HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHH
Q 004269 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADD-FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 130 (764)
...+..++..+...+++++|+++.+...+.. |+... |-.+.-.+.+.++...+.-+ .++.
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 4556667777778888888888888666543 33332 22222244444443333222 2233
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChh
Q 004269 131 ALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS 210 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 210 (764)
......++.-+..+.+.|.+ . .-+...+-.+..+|-+.|+.++|..+++++.+..+ -|..+.|.+-..+... +++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~-~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILL-Y--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hcccccchhHHHHHHHHHHh-h--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHH
Confidence 33333333222223333321 1 12223444555555555555555555555555442 2444555555555555 555
Q ss_pred HHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcc---cccccccccccCCCccCCccc
Q 004269 211 AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINR---TSEGRLRSSRLDIPIPLNALP 287 (764)
Q Consensus 211 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 287 (764)
+|.+++.+.++ .|....++..+..++.++.+.....-+.... .+.+....
T Consensus 167 KA~~m~~KAV~--------------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~------------- 219 (906)
T PRK14720 167 KAITYLKKAIY--------------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREF------------- 219 (906)
T ss_pred HHHHHHHHHHH--------------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhcc-------------
Confidence 55555554432 2344444555555555554421111110000 00000000
Q ss_pred cchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 004269 288 VMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIV 339 (764)
Q Consensus 288 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 339 (764)
.+- ..++-.+-..|-..++++++..+++...+..-. |..+..-++..|.
T Consensus 220 ~~~--~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRL--VGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred chh--HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 000 136666667777888888888888888875422 4455555655554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0096 Score=55.11 Aligned_cols=185 Identities=14% Similarity=0.083 Sum_probs=119.8
Q ss_pred HHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhH-HHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004269 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLF-VMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 58 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 136 (764)
+.++|...|.+...+.- +.... .+....+..+-......++.+. .-++.+.+.......+......-...|+..|
T Consensus 47 ~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~ 122 (299)
T KOG3081|consen 47 MYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDG 122 (299)
T ss_pred HHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCC
Confidence 34667777776554432 22222 2333333333333333333333 3455556655555555455555566789999
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh----hcChhHH
Q 004269 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW----QKNLSAV 212 (764)
Q Consensus 137 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a 212 (764)
++++|.+..+... +......=+..+.+..+++-|.+.++.|.+. -+..|.+.|..++.+ .+.+..|
T Consensus 123 ~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 123 DFDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred ChHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhH
Confidence 9999999887531 2233333445567788899999999999874 266677767666654 3457777
Q ss_pred HHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHh
Q 004269 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 256 (764)
.-+|+++....+|++.+.+....++...|++++|..+++....+
T Consensus 193 fyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 193 FYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888763
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.014 Score=59.04 Aligned_cols=202 Identities=12% Similarity=0.002 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHhhhcCC-CCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHH
Q 004269 138 LEEASNLIYFLGERYGI-YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
+.++++.-+.++...+. .|+...+...+.+......-..+..++. +... ..-...-|...+. +...|.++.|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~~-~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRALQ-TYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHHH-HHHhcccchHHHHH
Confidence 44444444555332221 3444455555554443322222222222 2222 1223334444444 45689999999999
Q ss_pred HHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhH
Q 004269 217 EDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF 296 (764)
Q Consensus 217 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (764)
..+.+..|.|++.+......+.+.++..+|.+.++.+.. ..|+.+ ..+
T Consensus 330 ~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~------------------------------~l~ 377 (484)
T COG4783 330 QPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSP------------------------------LLQ 377 (484)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCcc------------------------------HHH
Confidence 999999999999999999999999999999999999988 667652 577
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004269 297 SDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA 376 (764)
Q Consensus 297 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 376 (764)
-.+..++.+.|++.+|+.+++...... +-|...|..|-.+|...|+..++..-..+ .|...
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~ 438 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALA 438 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhC
Confidence 788899999999999999999988764 45788999999999999998887665544 45667
Q ss_pred CCHHHHHHHHHHHhhCC
Q 004269 377 LELDLAEALLDQISRCT 393 (764)
Q Consensus 377 g~~~~a~~~~~~~~~~~ 393 (764)
|+++.|...+....+..
T Consensus 439 G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 439 GRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 88888888888877653
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.1e-05 Score=48.92 Aligned_cols=33 Identities=24% Similarity=0.579 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 004269 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP 326 (764)
Q Consensus 294 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 326 (764)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00043 Score=60.42 Aligned_cols=103 Identities=10% Similarity=-0.175 Sum_probs=61.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhh
Q 004269 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (764)
.+...+...|++++|...|+.....+ +.+...|..+..++.+.|++++|...|+......+ .+..++..+..++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHc
Confidence 44555666666666666666665332 33445666666666666666666666666665432 2555566666666666
Q ss_pred cChhHHHHHHHHHHhcCCCCHhhHHH
Q 004269 207 KNLSAVHEIWEDYIKHYSLSIFSLRK 232 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~ 232 (764)
|++++|...|+...+..+.+...+..
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~ 131 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEI 131 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 66666666666666655555554443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00054 Score=59.77 Aligned_cols=101 Identities=8% Similarity=-0.121 Sum_probs=59.6
Q ss_pred HHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 004269 549 IMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG 628 (764)
Q Consensus 549 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 628 (764)
....++...|++++|...|+.+.... +.+...|..+..++.+.|++++|...|++..... +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34445556666666666666666543 2245555666666666666666666666666432 335556666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHH
Q 004269 629 RIDVIEFIIEQMHQNKVQPDPSTCH 653 (764)
Q Consensus 629 ~~~~a~~~~~~m~~~~~~p~~~~~~ 653 (764)
+.++|+..|++.++ ..|+...+.
T Consensus 107 ~~~eAi~~~~~Al~--~~p~~~~~~ 129 (144)
T PRK15359 107 EPGLAREAFQTAIK--MSYADASWS 129 (144)
T ss_pred CHHHHHHHHHHHHH--hCCCChHHH
Confidence 66666666666664 445544443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0028 Score=58.47 Aligned_cols=170 Identities=15% Similarity=0.133 Sum_probs=101.9
Q ss_pred HHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 004269 464 IEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN 543 (764)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~ 543 (764)
+.+.+.......+......-...|.+.|++++|++..... ...+....+ +..+.+..+.+-|.+.+++|++- -+
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-ENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-chHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 3334444444444444444455677788888888777652 222222222 33445666777777778887763 36
Q ss_pred HHHHHHHHHHHHhh----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004269 544 AATYNIMIDCCSII----RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNT 619 (764)
Q Consensus 544 ~~t~~~ll~~~~~~----g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 619 (764)
..|.+.|..++.+. +.+..|.-+|++|-++ ..|+..+.+....++...|++++|..+++..+... ..++.+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHH
Confidence 66776666666543 4566777777777654 45777777777777777777777777777777543 335556555
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHH
Q 004269 620 ILKKACEKGRI-DVIEFIIEQMH 641 (764)
Q Consensus 620 li~~~~~~g~~-~~a~~~~~~m~ 641 (764)
+|-.-...|.. +-..+.+.+++
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHH
Confidence 55555555543 33445555555
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00071 Score=58.66 Aligned_cols=97 Identities=11% Similarity=-0.018 Sum_probs=55.8
Q ss_pred hcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHH
Q 004269 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 167 (764)
.....+...+...|+++.|.+.++.....+ +.+...+..+...|...|++++|..+|++..+.. +.+...+..+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Confidence 334444555555666666666666665543 3355566666666666666666666666654321 2334455555556
Q ss_pred HhccCCHHHHHHHHHHHhhc
Q 004269 168 CAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~ 187 (764)
+...|++++|...|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666665553
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0019 Score=55.97 Aligned_cols=91 Identities=11% Similarity=0.055 Sum_probs=44.4
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004269 550 MIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629 (764)
Q Consensus 550 ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 629 (764)
+...+...|++++|...|+.+.+.+ +.+...|..+...+.+.|++++|..++++....+ +.+...+..+...+...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCC
Confidence 3344444555555555555554432 2234444445555555555555555555544332 2234444444455555555
Q ss_pred HHHHHHHHHHHHH
Q 004269 630 IDVIEFIIEQMHQ 642 (764)
Q Consensus 630 ~~~a~~~~~~m~~ 642 (764)
+++|...+++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (135)
T TIGR02552 101 PESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00088 Score=68.13 Aligned_cols=124 Identities=9% Similarity=-0.018 Sum_probs=97.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccC
Q 004269 162 NSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR 241 (764)
Q Consensus 162 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 241 (764)
.+|+..+...++++.|..+|+++.+.. |+ ....+.+.+...++-.+|.+++.+.++..+.|..........+.+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 345555566788888888888888764 44 33456777777777788888888888777778788888888888999
Q ss_pred CHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 242 DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 242 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
+.+.|+++.+++.+ ..|+.+ .+|..|..+|.+.|+++.|+..++.+.-
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f------------------------------~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEF------------------------------ETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhH------------------------------HHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999988 666662 5899999999999999999988887763
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00075 Score=53.40 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=33.8
Q ss_pred HHhhCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004269 554 CSIIRCFKSASALVSMMVRDGF-YPQTMTYTALIKILLDYG--------DFDEALNLLDLVSLEGIPHDVLLYNTILKKA 624 (764)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 624 (764)
|...+++.....+|+.+.+.|+ .|++.+|+.++.+.++.. ++-+.+.+++.|+..+++|+..+|+.++..+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3333444444444444444444 444455554444444321 2233444455555555555555555555444
Q ss_pred H
Q 004269 625 C 625 (764)
Q Consensus 625 ~ 625 (764)
.
T Consensus 115 l 115 (120)
T PF08579_consen 115 L 115 (120)
T ss_pred H
Confidence 3
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=5e-05 Score=45.94 Aligned_cols=31 Identities=29% Similarity=0.583 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 004269 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGI 540 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~ 540 (764)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777664
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.001 Score=67.70 Aligned_cols=127 Identities=15% Similarity=0.057 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
.....|+..+...++++.|+.+|+++.+.+ |+ ....|++.+...++-.+|.+++++.....+ -+......-.+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 344566677777899999999999997653 55 455688888888999999999999887532 356666666677
Q ss_pred HHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
+.+.++.+.|..+.+++.+..|.+..+|..|..+|...|+++.|+-.++.++-
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 88999999999999999998888899999999999999999999999998874
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00068 Score=53.64 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhC--------ChhHHHHHHHHHHHCCCCCCHHH
Q 004269 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGI-PPNAATYNIMIDCCSIIR--------CFKSASALVSMMVRDGFYPQTMT 581 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~g~~p~~~~ 581 (764)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556677777999999999999999999 999999999999987653 34568899999999999999999
Q ss_pred HHHHHHHHHhc
Q 004269 582 YTALIKILLDY 592 (764)
Q Consensus 582 ~~~li~~~~~~ 592 (764)
|+.++..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99999988763
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00093 Score=68.22 Aligned_cols=126 Identities=15% Similarity=0.162 Sum_probs=100.6
Q ss_pred cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHH
Q 004269 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301 (764)
Q Consensus 222 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 301 (764)
..+.+......+++.+....+++.+..++-+.... |+.. ....++..++|+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s---~~~~--------------------------~~~~~t~ha~vR 111 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHS---PNCS--------------------------YLLPSTHHALVR 111 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcC---cccc--------------------------cccCccHHHHHH
Confidence 35667777778888888888889999888888763 2210 000147789999
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004269 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA 376 (764)
Q Consensus 302 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 376 (764)
.|.+.|..+.++.+++.=...|+-||.++++.||..+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 112 ~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 112 QCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999888776777766555545444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0011 Score=67.62 Aligned_cols=113 Identities=20% Similarity=0.229 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004269 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVRD--GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYN 618 (764)
Q Consensus 541 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 618 (764)
+.+......+++.+....+++.+..++..+... ....-..|..++|+.|.+.|..++++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344445555555555555555555555555433 111122233355555555555555555555555555555555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004269 619 TILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCH 653 (764)
Q Consensus 619 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 653 (764)
.|++.+.+.|++..|.++...|...+...+..|+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~ 177 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQA 177 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHH
Confidence 55555555555555555555555444444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.077 Score=52.89 Aligned_cols=109 Identities=15% Similarity=0.225 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004269 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 590 (764)
+.+..|.-+...|+...|.++-++.. -|+..-|...+.+++..+++++-..+-.. +-++..|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555666677777777777766553 46777777788888888888776654322 224466777888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 004269 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQ 639 (764)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 639 (764)
+.|+..+|..++.++ + +..-+..|.+.|++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888777762 1 13445566777777777665444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0023 Score=56.04 Aligned_cols=127 Identities=13% Similarity=0.065 Sum_probs=59.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCh--hhHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE--VTYTELL 200 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll 200 (764)
.|..++..+ ..++...+...++.+...++-.+ .....-.+...+...|++++|...|+........|+. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 24555555555555543321100 0111222334445555555555555555554322211 1223344
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHH
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQH 252 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 252 (764)
..+...|++++|...++.. .........+....++|.+.|+.++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555666555555442 12223344555566667777777777776664
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.018 Score=52.93 Aligned_cols=187 Identities=9% Similarity=-0.029 Sum_probs=138.5
Q ss_pred hCCcchHHHHHHhcccc---C-CCCChhc-HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHH
Q 004269 65 RGERSRASHLLLNLGHA---H-HSLGADD-FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLE 139 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~---~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 139 (764)
..++++.++++.++... + ..++..+ |..++-+....+....|..+++.+...= +-+..+-..-.-.+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 45678888888777632 2 2344433 5555556667788999999999987763 333333222222355679999
Q ss_pred HHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHH
Q 004269 140 EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY 219 (764)
Q Consensus 140 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 219 (764)
+|+++++.+.+.+ +.|.+++-.=+...-..|+--+|++-+....+. +..|...|..+-..|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999998755 556777776666666677777888888777766 5569999999999999999999999999999
Q ss_pred HhcCCCCHhhHHHHHHHhhccC---CHHHHHHHHHHHHH
Q 004269 220 IKHYSLSIFSLRKFVWSFTRLR---DLKSAYETLQHMVA 255 (764)
Q Consensus 220 ~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~ 255 (764)
+=..|.++..+..+...+.-.| +...|.+.|.+..+
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 8877888888888877766555 56778899998887
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.60 E-value=8.5e-05 Score=44.90 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=23.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGL 324 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 324 (764)
+||++|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 788888888888888888888888887663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0013 Score=64.79 Aligned_cols=131 Identities=11% Similarity=0.050 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
.+|..+++..-+.+..+.|+.+|.+..+...+..++....+++.-+ ..++.+.|.++|+...+. +..+...|..-+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3566666666666667777777777764333333333333333322 245556677777776654 34455666666666
Q ss_pred HHhhcChhHHHHHHHHHHhcCCCCH---hhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 203 AVWQKNLSAVHEIWEDYIKHYSLSI---FSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
+...++.+.|..+|+..+...+++. ..|...+..-.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6777777777777777776544433 5777777777788888888888888776
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0046 Score=54.19 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=57.5
Q ss_pred hCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHH
Q 004269 557 IRCFKSASALVSMMVRDGFYP--QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD--VLLYNTILKKACEKGRIDV 632 (764)
Q Consensus 557 ~g~~~~a~~~~~~~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~ 632 (764)
.++...+...++.+.+....- .....-.+...+...|++++|...|+........|+ ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555666666655542111 012222344555666666666666666665431111 1233345555666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004269 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQ 673 (764)
Q Consensus 633 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 673 (764)
|+..++...... .....+...-.+|.+.|++++|...|+
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666665532211 122222233336666677777666665
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0065 Score=60.17 Aligned_cols=119 Identities=9% Similarity=-0.015 Sum_probs=72.2
Q ss_pred HHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhcccccccccccccC
Q 004269 200 LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL-RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLD 278 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (764)
+..|...|++..|-.++..+ ...|-.. |+++.|.+.|++..+.-...+....
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l--------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~------------- 153 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL--------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS------------- 153 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH--------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH-------------
T ss_pred HHHHHhcCcHHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh-------------
Confidence 34566777777766666554 4467677 8899999988888763222221100
Q ss_pred CCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc-----c-cHHHHHHHHHhcCChhHHHHHHH
Q 004269 279 IPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS-----H-TYDGFIRAIVSDRGLRNGMEVLK 352 (764)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~-~~~~ll~~~~~~~~~~~a~~~~~ 352 (764)
...++..+...+.+.|++++|.++|++........+. . .|-..+-.+...||...|...++
T Consensus 154 -------------a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~ 220 (282)
T PF14938_consen 154 -------------AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALE 220 (282)
T ss_dssp -------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0146777888899999999999999998765332221 1 12223334556788888888888
Q ss_pred HHHHCC
Q 004269 353 IMQQNN 358 (764)
Q Consensus 353 ~~~~~~ 358 (764)
......
T Consensus 221 ~~~~~~ 226 (282)
T PF14938_consen 221 RYCSQD 226 (282)
T ss_dssp HHGTTS
T ss_pred HHHhhC
Confidence 887653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0041 Score=52.38 Aligned_cols=105 Identities=11% Similarity=-0.047 Sum_probs=50.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCC--ChhhHHHHHH
Q 004269 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGK--NEVTYTELLK 201 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~ 201 (764)
+-.+...+.+.|++++|.+.|+.+.+..+-.+ ....+..+..++.+.|+++.|...|+.+....+.. ...++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444455555666666666655543321101 11234445555555566666666665555432111 1233444444
Q ss_pred HHHhhcChhHHHHHHHHHHhcCCCCHhh
Q 004269 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFS 229 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 229 (764)
++...|+.+.|.+.++.+.+..+.+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 5555555555555555555544444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.12 Score=54.46 Aligned_cols=108 Identities=8% Similarity=0.022 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004269 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373 (764)
Q Consensus 294 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 373 (764)
.+|+.+...++....|+.|.+.|..-.. . ...+.++.....+++-..+-..+ +-+....-.+.+++
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf 862 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHH
Confidence 4677777777777777777777765331 1 12345555555555544443332 22445555667777
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHH
Q 004269 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKM 421 (764)
Q Consensus 374 ~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m 421 (764)
.+.|.-++|.+.|-+.... .+.+..|...+++.+|.++-+..
T Consensus 863 ~svGMC~qAV~a~Lr~s~p------kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 863 TSVGMCDQAVEAYLRRSLP------KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HhhchHHHHHHHHHhccCc------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777666655444332 24455666666666666665543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0033 Score=61.91 Aligned_cols=132 Identities=9% Similarity=0.008 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcH--HHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDF--FHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 130 (764)
..|...+....+.+..+.|..+|.+....+ ..+...| .+++..+ ..++.+.|..+|+...+. ++.+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 345566777777788899999999887543 2333344 3344333 246777799999988876 4667778888888
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHhhc
Q 004269 131 ALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
.+...|+.+.|+.+|++.....+-.. ....|...+..=.+.|+++.+.++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88889999999999998875422222 2347888888888888888888888888774
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.41 Score=51.37 Aligned_cols=158 Identities=9% Similarity=0.005 Sum_probs=74.7
Q ss_pred HHHhhCCcchHHHHHHhcc--------ccCCCCChhcHHHH-----HHHhhCCCChhHHHHHHHHHHHcCccccHHHHHH
Q 004269 61 DALCRGERSRASHLLLNLG--------HAHHSLGADDFFHI-----LNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLL 127 (764)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l-----l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 127 (764)
++.+..++++-+++.+.+. .-|++.+..-|.++ +.-+...+.+..|+++-..+...-... ..+|..
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~ 476 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLE 476 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHH
Confidence 3344455555555544432 33555555555444 333334456666766666554322111 455556
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCC-CChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCC----CChhhHHHHHHH
Q 004269 128 MMQALCKGGYLEEASNLIYFLGERYGIY-PILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG----KNEVTYTELLKL 202 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~ 202 (764)
....+.+..+..+ ..+++.+.++.+.+ -...+|..+.+..-..|+.+-|..+++.=.+.+-. .+..-+...++-
T Consensus 477 Wa~~kI~~~d~~d-~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~k 555 (829)
T KOG2280|consen 477 WARRKIKQSDKMD-EEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKK 555 (829)
T ss_pred HHHHHHhccCccc-hHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHH
Confidence 6665655432211 22333333332221 12345666666666677777777766542222111 122233444445
Q ss_pred HHhhcChhHHHHHHHHHH
Q 004269 203 AVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~ 220 (764)
+...||.+....++-++.
T Consensus 556 aies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 556 AIESGDTDLIIQVLLHLK 573 (829)
T ss_pred HHhcCCchhHHHHHHHHH
Confidence 555555555555544443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.3 Score=49.06 Aligned_cols=130 Identities=15% Similarity=0.155 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004269 545 ATYNIMIDCCSIIRCFKSASALVSMMVRDG-FYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKK 623 (764)
Q Consensus 545 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 623 (764)
..|...+++..+...++.|..+|-++.+.| +.+++.++++++..++. |+..-|.++|+--... ++.+..--+-.+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 346667777777788899999999999888 67888899999987765 6778888888865432 23344444556677
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 624 ACEKGRIDVIEFIIEQMHQNKVQPD--PSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 624 ~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
+..-++-+.|..+|+...++ +..+ ..+|..+|.-=+.-|+...|..+=+++..
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 77888989999999966542 2333 56788888877888998888877776654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00074 Score=52.62 Aligned_cols=80 Identities=11% Similarity=0.190 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHH
Q 004269 592 YGDFDEALNLLDLVSLEGI-PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP-STCHFVFSGYVNCGFHNSAM 669 (764)
Q Consensus 592 ~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~ 669 (764)
.|+++.|+.+++++.+..- .|+...+-.+...|.+.|++++|..++++ . ...|+. .....+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4677888888888776432 12445555577788888888888888877 2 234443 33333444778888888888
Q ss_pred HHHHH
Q 004269 670 EALQV 674 (764)
Q Consensus 670 ~~~~~ 674 (764)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87764
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.33 Score=48.47 Aligned_cols=105 Identities=19% Similarity=0.171 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004269 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626 (764)
Q Consensus 547 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 626 (764)
.+.-|.-|...|+...|.++-.+. -.|+...|..-+.+|+..++|++-.++... +-.+.-|..++.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 333344455556665555554443 235666666667777777776665554321 2234566666667777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 004269 627 KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671 (764)
Q Consensus 627 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 671 (764)
.|+..+|..++.+ +. + ..-+..|.+.|+|.+|.+.
T Consensus 250 ~~~~~eA~~yI~k-----~~-~----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPK-----IP-D----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHh-----CC-h----HHHHHHHHHCCCHHHHHHH
Confidence 7776666666555 11 1 2234566667777666554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0062 Score=48.48 Aligned_cols=88 Identities=17% Similarity=-0.056 Sum_probs=38.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhh
Q 004269 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (764)
.+...+...|++++|...|++..+.. +.+...+..+...+...+++++|.+.|+........ +..++..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 34444555555555555555543321 112234444444455555555555555544443211 222333333334444
Q ss_pred cChhHHHHHHH
Q 004269 207 KNLSAVHEIWE 217 (764)
Q Consensus 207 ~~~~~a~~~~~ 217 (764)
|+.+.|...+.
T Consensus 82 ~~~~~a~~~~~ 92 (100)
T cd00189 82 GKYEEALEAYE 92 (100)
T ss_pred HhHHHHHHHHH
Confidence 44444444333
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.013 Score=52.92 Aligned_cols=105 Identities=18% Similarity=0.196 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHHhh-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004269 541 PPNAATYNIMIDCCSII-----RCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL 615 (764)
Q Consensus 541 ~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 615 (764)
..|..+|..+++.+.+. |.++=....+..|.+.|+.-|..+|+.|++.+=+ |.+ .|..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n- 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRN- 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------cccc-
Confidence 35777777777777643 6677777778888888888888888888887754 321 1211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004269 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGF 664 (764)
Q Consensus 616 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 664 (764)
.+.++..-|- .+.+-|++++++|...|+.||..++..|++++.+.+.
T Consensus 107 ~fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111121 2346678888888888888888888888888877665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0074 Score=47.98 Aligned_cols=92 Identities=12% Similarity=-0.010 Sum_probs=44.6
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc
Q 004269 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 240 (764)
+..+...+...|++++|...++...+.... +...+..+...+...++++.|.+.++...+..+.+..++..+...+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 344455555566666666666655543211 2234444444444455555555555554444343444444444444444
Q ss_pred CCHHHHHHHHHHH
Q 004269 241 RDLKSAYETLQHM 253 (764)
Q Consensus 241 g~~~~A~~~~~~~ 253 (764)
|+.+.|...+...
T Consensus 82 ~~~~~a~~~~~~~ 94 (100)
T cd00189 82 GKYEEALEAYEKA 94 (100)
T ss_pred HhHHHHHHHHHHH
Confidence 5554444444443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.011 Score=53.35 Aligned_cols=106 Identities=12% Similarity=0.154 Sum_probs=70.1
Q ss_pred CCCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCH
Q 004269 505 TPLGTPTYNTVLHSLVEA-----QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQT 579 (764)
Q Consensus 505 ~~~~~~~~~~li~~~~~~-----~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 579 (764)
...+-.+|..+|..|.+. |..+-....++.|.+-|+.-|..+|+.||+.+-+..-. -..+|+.+
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fv--p~n~fQ~~--------- 111 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFV--PRNFFQAE--------- 111 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcc--cccHHHHH---------
Confidence 345666777777777654 67778888899999999999999999999998763221 11111111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004269 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGR 629 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 629 (764)
..-|- .+-+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 112 ------F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ------FMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------hccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111 1234567777777777777777777777777755543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.016 Score=48.68 Aligned_cols=97 Identities=16% Similarity=0.046 Sum_probs=79.6
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHhhcCCC--CChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCC---CHhhHHHHH
Q 004269 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVG--KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL---SIFSLRKFV 234 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li 234 (764)
++..+...+.+.|++++|.+.|+.+.+.... .....+..+..++...|+++.|...++.+.+..+. ...++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 5667778888999999999999999875322 11346667888899999999999999999875433 356788888
Q ss_pred HHhhccCCHHHHHHHHHHHHHh
Q 004269 235 WSFTRLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~~~~~ 256 (764)
.++.+.|+.+.|.+.++.+.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 9999999999999999999984
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.043 Score=47.30 Aligned_cols=88 Identities=9% Similarity=-0.070 Sum_probs=47.1
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHH
Q 004269 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
-+...|++++|..+|+-.....+. +..-|-.|--++-..|++++|...|.....-.+.|+..+-.+..++...|+.+.|
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHH
Confidence 344455555555555555443221 2223333434444455555555555555554455556666666666666666666
Q ss_pred HHHHHHHHH
Q 004269 247 YETLQHMVA 255 (764)
Q Consensus 247 ~~~~~~~~~ 255 (764)
.+.|+....
T Consensus 123 ~~aF~~Ai~ 131 (157)
T PRK15363 123 IKALKAVVR 131 (157)
T ss_pred HHHHHHHHH
Confidence 666666554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.033 Score=50.50 Aligned_cols=91 Identities=7% Similarity=-0.257 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 004269 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
...+..+...|...|++++|...|++..+...-+++ ...+..+...+.+.|++++|...++...+.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 345666666777778888888877776543211121 245666777777777777777777776664221 333444444
Q ss_pred HHHHhhcChhHHH
Q 004269 201 KLAVWQKNLSAVH 213 (764)
Q Consensus 201 ~~~~~~~~~~~a~ 213 (764)
..+...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 4555555544333
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.14 Score=44.93 Aligned_cols=101 Identities=11% Similarity=-0.067 Sum_probs=42.7
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCC-CChhhHHH
Q 004269 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KNEVTYTE 198 (764)
Q Consensus 120 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ 198 (764)
|++.-.-.|..++.+.|+..+|...|++... ....-|....-.+.++....+++..|...++.+-+..+. -+..+.-.
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4444444444455555555555555544431 122233333444444444445555555555444433110 01122233
Q ss_pred HHHHHHhhcChhHHHHHHHHHHh
Q 004269 199 LLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 199 ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
+-+.+...|...+|+..|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 33444444555555554444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.04 Score=49.93 Aligned_cols=89 Identities=15% Similarity=-0.015 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPN--AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 587 (764)
..+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+.+..+.. +-+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3556666666677777777777777665432221 2345555556666666666666666666532 113444445555
Q ss_pred HHHhcCCHHHHH
Q 004269 588 ILLDYGDFDEAL 599 (764)
Q Consensus 588 ~~~~~g~~~~A~ 599 (764)
.|...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 555555544433
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.18 Score=52.75 Aligned_cols=230 Identities=10% Similarity=0.090 Sum_probs=118.7
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHH---------HHHhhhcCCCCChhhhHHHHHHHhccCCHH--HHHHHHHHHhhc
Q 004269 119 GLNNKCYLLMMQALCKGGYLEEASNLI---------YFLGERYGIYPILPVYNSFLGACAKLHSMV--HANLCLDLMDSR 187 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~ 187 (764)
.+.+..+.+-+-.|...|.+++|.++- +.+..+ ..+...++.-=++|.+-.+.. +...-+++|+++
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~---ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~r 629 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME---ALEALDFETARKAYIRVRDLRYLELISELEERKKR 629 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHH---HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 334444555555666777777665421 111000 012223444455665554433 444456778888
Q ss_pred CCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccc
Q 004269 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT 267 (764)
Q Consensus 188 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 267 (764)
|-.|+...... .|+-.|.+.+|.++|. ++|.-..|+++|..|.-
T Consensus 630 ge~P~~iLlA~---~~Ay~gKF~EAAklFk---------------------~~G~enRAlEmyTDlRM------------ 673 (1081)
T KOG1538|consen 630 GETPNDLLLAD---VFAYQGKFHEAAKLFK---------------------RSGHENRALEMYTDLRM------------ 673 (1081)
T ss_pred CCCchHHHHHH---HHHhhhhHHHHHHHHH---------------------HcCchhhHHHHHHHHHH------------
Confidence 88888765443 3566777888877765 55666666666665542
Q ss_pred ccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHH
Q 004269 268 SEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNG 347 (764)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 347 (764)
| ....-+...|..++-..+.++-.+.. -|..--.+....+...|+.++|
T Consensus 674 ----------------------------F-D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KA 722 (1081)
T KOG1538|consen 674 ----------------------------F-DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKA 722 (1081)
T ss_pred ----------------------------H-HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhh
Confidence 0 12233344444443333332221110 0111111112222333444444
Q ss_pred HHH-------------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHH
Q 004269 348 MEV-------------LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERA 414 (764)
Q Consensus 348 ~~~-------------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 414 (764)
..+ -+.+.. .+..+...+...+.+...+..|-++|..|.+. .+++..+...+++++|
T Consensus 723 i~i~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eA 792 (1081)
T KOG1538|consen 723 IEICGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEA 792 (1081)
T ss_pred hhhhhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHh
Confidence 332 222221 13344555555566667778888888888754 4567778888888888
Q ss_pred HHHHHHHhccCCCCH
Q 004269 415 IKIFAKMRQKLRPDI 429 (764)
Q Consensus 415 ~~l~~~m~~~~~p~~ 429 (764)
..+-+...+ ..||.
T Consensus 793 FalAe~hPe-~~~dV 806 (1081)
T KOG1538|consen 793 FALAEKHPE-FKDDV 806 (1081)
T ss_pred HhhhhhCcc-ccccc
Confidence 888776655 44554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.2 Score=48.00 Aligned_cols=176 Identities=14% Similarity=0.049 Sum_probs=104.6
Q ss_pred HHHHHHhhCCcchHHHHHHhccccCCCCChhcH---HHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004269 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADDF---FHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 58 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 134 (764)
....+...|++++|++.|+.+....+ -++... -.+..++.+.++++.|...+++..+..-.....-|...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 35556778888888888888877542 222222 34556777888888888888888876422122233233333321
Q ss_pred --cC---------------C---HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChh
Q 004269 135 --GG---------------Y---LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV 194 (764)
Q Consensus 135 --~g---------------~---~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 194 (764)
.+ + ...|...|+.+. +-|-...-..+|...+..++.. .-..
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~~~---la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLKDR---LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHHHH---HHHH
Confidence 11 1 123334444443 3333333344554444444331 0011
Q ss_pred hHHHHHHHHHhhcChhHHHHHHHHHHhcCCC---CHhhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004269 195 TYTELLKLAVWQKNLSAVHEIWEDYIKHYSL---SIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 254 (764)
--.+.+.|.+.|.+..|..-++.+++..+. ...+...++.+|.+.|..+.|..+...+.
T Consensus 178 -e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 -ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 124556688889999999999999986544 44566777888999999999988776654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.078 Score=49.48 Aligned_cols=177 Identities=12% Similarity=0.055 Sum_probs=104.2
Q ss_pred hhhhHHHHHHHHHhhCCcchHHHHHHhccccCC--CCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHH
Q 004269 51 ISKATQMQIVDALCRGERSRASHLLLNLGHAHH--SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLM 128 (764)
Q Consensus 51 ~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 128 (764)
+...+-.....+...|++++|+..|+.+....+ +........+..++.+.|+++.|...++++.+..-......+...
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 344444557778899999999999999987642 223344667778888999999999999998886311111222222
Q ss_pred HHHHHccC-------------CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhh
Q 004269 129 MQALCKGG-------------YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVT 195 (764)
Q Consensus 129 i~~~~~~g-------------~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 195 (764)
+.+.+... ...+|... +..++.-|-...-..+|...+..+... =..-
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~----------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~ 143 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEE----------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEH 143 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHH----------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHH----------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHH
Confidence 22222111 12233333 444555555555566666655555432 0011
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHh---hHHHHHHHhhccCCHHHHH
Q 004269 196 YTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIF---SLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 196 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~ 247 (764)
--.+.+.|.+.|.+..|..-++.+++.++.+.. +...++.+|.+.|..+.|.
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 123556788889999999999988887666654 4566677788888777543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.055 Score=50.03 Aligned_cols=122 Identities=9% Similarity=-0.124 Sum_probs=63.8
Q ss_pred hhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH-----HHHHHHHHHHHccCCH
Q 004269 64 CRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN-----KCYLLMMQALCKGGYL 138 (764)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~g~~ 138 (764)
..+.+.-.+.++.+.++.+.+.++.....|.+.-.+.||.+.|...|++..+..-..|. -+.......|.-++++
T Consensus 189 G~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~ 268 (366)
T KOG2796|consen 189 GMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNF 268 (366)
T ss_pred cchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccch
Confidence 34555556666666666555555666666666666666666666666655443212222 2222223344555666
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc
Q 004269 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 139 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
.+|...++++...+. .|...-|.-.-++.-.|+...|++.++.|...
T Consensus 269 a~a~r~~~~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 269 AEAHRFFTEILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHHhhccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666666666654432 22223333222333346666666666666664
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0031 Score=49.05 Aligned_cols=80 Identities=13% Similarity=-0.092 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHhhcChhHHH
Q 004269 135 GGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE-VTYTELLKLAVWQKNLSAVH 213 (764)
Q Consensus 135 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~ 213 (764)
.|+++.|+.+|+++.+.....++...+-.+..+|.+.|++++|..+++. ... .|+. .....+..++...|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4677777777777765442212333444467777777777777777766 221 2222 22223344455555555555
Q ss_pred HHHH
Q 004269 214 EIWE 217 (764)
Q Consensus 214 ~~~~ 217 (764)
+.++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.028 Score=50.75 Aligned_cols=65 Identities=9% Similarity=-0.293 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHhh
Q 004269 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
...|..+...+...|++++|...|++.....+-++ ...+|..+...+...|++++|+..++....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555566666666666666543211111 122455555666666666666666665554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.031 Score=57.29 Aligned_cols=89 Identities=13% Similarity=0.097 Sum_probs=48.5
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004269 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFD 596 (764)
Q Consensus 517 ~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~ 596 (764)
..+...|++++|+.+|++..+.. +-+...|..+..+|...|++++|+..++.+.+.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 33445566666666666665543 2234445555555555666666666666655542 123444555555566666666
Q ss_pred HHHHHHHHHHH
Q 004269 597 EALNLLDLVSL 607 (764)
Q Consensus 597 ~A~~~~~~m~~ 607 (764)
+|...|++...
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 66666665553
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.052 Score=46.82 Aligned_cols=94 Identities=5% Similarity=-0.128 Sum_probs=81.2
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccc
Q 004269 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
-.+-..+...|++++|.++|+.+..-.+.+..-|..|..++-..|++++|+..|..... +.|+.+
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp------------- 103 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAP------------- 103 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCc-------------
Confidence 33444467899999999999999998999999999999999999999999999999988 556653
Q ss_pred cCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
..+-.+..++...|+.+.|.+.|+.....
T Consensus 104 -----------------~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 104 -----------------QAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred -----------------hHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 47778889999999999999999987764
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.048 Score=51.76 Aligned_cols=102 Identities=9% Similarity=0.093 Sum_probs=83.8
Q ss_pred HHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCcc
Q 004269 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (764)
..+.+++++|...|...++-.+.|.+.|..-..+|++.|..+.|.+-.+.... ++|.-
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~y-------------------- 148 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHY-------------------- 148 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHH--------------------
Confidence 56778899999999999988888999999999999999999999888887776 55543
Q ss_pred CCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 004269 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338 (764)
Q Consensus 283 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 338 (764)
..+|..|-.+|...|++++|++.|++.++ +.|+-.+|..=+...
T Consensus 149 ----------skay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 149 ----------SKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred ----------HHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 25899999999999999999999988886 578888776655443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.035 Score=50.10 Aligned_cols=61 Identities=13% Similarity=-0.039 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004269 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYP--QTMTYTALIKILLDYGDFDEALNLLDLVSL 607 (764)
Q Consensus 547 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (764)
+..+...+...|++++|...|+........| ...+|..+...|...|+.++|+..+++...
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444445556666666665555432111 123455555566666666666666666553
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.02 Score=58.59 Aligned_cols=51 Identities=6% Similarity=0.042 Sum_probs=27.0
Q ss_pred hhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
..|+++.|.+.|++.++..+.+...|..+..+|.+.|+++.|+..++.+.+
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~ 64 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE 64 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555544444455555555555555555555555555554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.79 Score=46.37 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=40.7
Q ss_pred HHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCC-------CCccHHHHHHHHHhcCCHHHHHHHH
Q 004269 347 GMEVLKIMQQNNLKPQDST-IATLSVECSKALELDLAEALLDQISRCT-------NPKPFSAFLAACDTMDKPERAIKIF 418 (764)
Q Consensus 347 a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~l~ 418 (764)
-.+++..-...-+.|+-.. ...++..+.+ +.+++..+-+.+.... -..+|..++...++.++..+|-+.+
T Consensus 244 ~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 244 LMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3344444444556665543 3345544444 4444444444332211 3445777777778888888777777
Q ss_pred HHHhc
Q 004269 419 AKMRQ 423 (764)
Q Consensus 419 ~~m~~ 423 (764)
.-+..
T Consensus 322 ~lL~~ 326 (549)
T PF07079_consen 322 ALLKI 326 (549)
T ss_pred HHHHh
Confidence 65554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.17 Score=46.89 Aligned_cols=143 Identities=10% Similarity=0.004 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH---
Q 004269 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLS--- 370 (764)
Q Consensus 294 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li--- 370 (764)
..-+.++..+.-.+.+.-.+.++.+..+...+.++.....|.+.--+.||.+.|...|+...+..-..|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 35567777777788888888888888876655666677777777778888888888888776654444444444333
Q ss_pred --HHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 004269 371 --VECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFS 437 (764)
Q Consensus 371 --~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~ 437 (764)
..|.-.+++..|...|+++.... +++.-|.-.-+..-.|+...|++..+.|.+ ..|...+-.+++-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~-~~P~~~l~es~~~ 327 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ-QDPRHYLHESVLF 327 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc-cCCccchhhhHHH
Confidence 34555678888888888887664 455555444445556888999999998887 5566666665543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0082 Score=43.87 Aligned_cols=59 Identities=7% Similarity=-0.038 Sum_probs=44.8
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCc
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK 261 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 261 (764)
..+...|++++|.+.|+.+++..+.+...+..+..++...|++++|...|+.+.+ ..|+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~ 63 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPD 63 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 4566777888888888888877777788888888888888888888888888876 4444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.14 Score=55.10 Aligned_cols=142 Identities=13% Similarity=0.048 Sum_probs=72.6
Q ss_pred CCCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhhC--------ChhHHHHHHHHH
Q 004269 505 TPLGTPTYNTVLHSLVEA-----QESHRAMEIFKQMKTCGIPPNA-ATYNIMIDCCSIIR--------CFKSASALVSMM 570 (764)
Q Consensus 505 ~~~~~~~~~~li~~~~~~-----~~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g--------~~~~a~~~~~~~ 570 (764)
.+.+...|...+.+.... +....|..+|++..+. .|+- ..+..+..++.... ++..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345666777777664432 2256788888887775 4553 33333322222111 112222222222
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004269 571 VRD-GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649 (764)
Q Consensus 571 ~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 649 (764)
... ....+...|.++.-.....|++++|...+++.... .|+...|..+...+...|+.++|.+.+++... +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 221 12223445555544444556666666666666543 35555666666666666666666666666553 44544
Q ss_pred HHH
Q 004269 650 STC 652 (764)
Q Consensus 650 ~~~ 652 (764)
.+|
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.74 Score=44.20 Aligned_cols=57 Identities=14% Similarity=-0.079 Sum_probs=32.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCC--CCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 004269 298 DVIHACGRTQNSGLAEQLMLQMQSLG--LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIM 354 (764)
Q Consensus 298 ~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 354 (764)
.+.+-|.+.|.+..|..-++.+.+.= .+........++.++...|..++|..+...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34455666777777777777766531 1112234455666666666666666655444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.55 E-value=1.5 Score=47.32 Aligned_cols=329 Identities=13% Similarity=0.115 Sum_probs=183.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCh--hHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL--RNGMEVLKIMQQNNLKPQDSTIATLSVE 372 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~ 372 (764)
+-..+|.-+...+.+..|+++-.-+...-..- ...|.....-+.+..+. +++.+..++=.+.... +...|..+..-
T Consensus 439 ~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~-~~iSy~~iA~~ 516 (829)
T KOG2280|consen 439 SEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT-PGISYAAIARR 516 (829)
T ss_pred chhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC-CceeHHHHHHH
Confidence 44467888888899999999887776322111 34444444444444322 2232222222222223 44567777777
Q ss_pred HHhcCCHHHHHHHHHHHhhCC-------CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCc
Q 004269 373 CSKALELDLAEALLDQISRCT-------NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAP 445 (764)
Q Consensus 373 ~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~ 445 (764)
.-.+|+.+.|..+++.=+..+ +..-+...+.-....|+.+-...++-+|... -+...|...+.
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~--~~~s~l~~~l~-------- 586 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK--LNRSSLFMTLR-------- 586 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH--HHHHHHHHHHH--------
Confidence 778999999999887654432 3334566677777888888887777776641 11111111111
Q ss_pred hhhchhhhhhhhHHHHHHHHHH-HHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc-----CCCCChhhHHHHHHHH
Q 004269 446 YEEGNMFSQVDSAKRINAIEMD-MARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS-----KTPLGTPTYNTVLHSL 519 (764)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~li~~~ 519 (764)
....+..++.+ |.+.+- ..+-+.|-...+...+-.+.-+. ...+-...-....+.+
T Consensus 587 -----------~~p~a~~lY~~~~r~~~~-------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~ 648 (829)
T KOG2280|consen 587 -----------NQPLALSLYRQFMRHQDR-------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAF 648 (829)
T ss_pred -----------hchhhhHHHHHHHHhhch-------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHH
Confidence 11111112221 111111 11222333222222222221111 0011111122222333
Q ss_pred HHcCC----------hHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004269 520 VEAQE----------SHRAMEIFKQMKTC-GIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588 (764)
Q Consensus 520 ~~~~~----------~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 588 (764)
++... ..+-+.+.+.+..+ |..-...|.+--+.-+...|+..+|.++-.+. -.||-..|-.=+.+
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~a 724 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTA 724 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHH
Confidence 33322 11222233333322 33334445555666677788888888887766 35888888888899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 004269 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSA 668 (764)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 668 (764)
++..+++++-+++-+.+. .+.-|...+.+|.+.|+.++|.+++.+.. |.. -...+|.+.|++.+|
T Consensus 725 La~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~--~l~-------ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 725 LADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG--GLQ-------EKVKAYLRVGDVKEA 789 (829)
T ss_pred HHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC--ChH-------HHHHHHHHhccHHHH
Confidence 999999998887776643 35678888899999999999998887653 221 356789999999998
Q ss_pred HHHH
Q 004269 669 MEAL 672 (764)
Q Consensus 669 ~~~~ 672 (764)
.+.-
T Consensus 790 ad~A 793 (829)
T KOG2280|consen 790 ADLA 793 (829)
T ss_pred HHHH
Confidence 7754
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.97 Score=44.75 Aligned_cols=286 Identities=13% Similarity=0.049 Sum_probs=164.8
Q ss_pred HHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhh--CCCChhHHHHHHHHHHHcCccccHHH--HHHHHHHHHccCC
Q 004269 62 ALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCA--RSPDPLFVMETWRMMEEKEIGLNNKC--YLLMMQALCKGGY 137 (764)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~ 137 (764)
....|+-..|.++-.+-... +.-|...+..||.+-. -.|+++.|++-|+-|... |.... ...|.-.--+.|+
T Consensus 94 AagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 94 AAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred hhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhccc
Confidence 34467777777765553311 2344455556665443 348888888888888753 22222 2223333346788
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcC-CCCChh--hHHHHHHHHHh---hcChhH
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM-VGKNEV--TYTELLKLAVW---QKNLSA 211 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~---~~~~~~ 211 (764)
.+.|+++-++...+- +--...+.+.+...+..|+++.|+++.+.-+... +.++.. .-..|+.+-.. .-|...
T Consensus 170 reaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 170 REAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred HHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 888888777664332 1223567778888888888888888887766542 344443 22333333221 223445
Q ss_pred HHHHHHHHHhcCCCCH-hhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccch
Q 004269 212 VHEIWEDYIKHYSLSI-FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (764)
|...-.+..| +.||. ..--.-..++.+.|+..++-++++.+-+....|+.
T Consensus 248 Ar~~A~~a~K-L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i---------------------------- 298 (531)
T COG3898 248 ARDDALEANK-LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI---------------------------- 298 (531)
T ss_pred HHHHHHHHhh-cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH----------------------------
Confidence 5544444443 23332 22333445677888888888888888774444432
Q ss_pred hhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 004269 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL-GLQPSS-HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT 368 (764)
Q Consensus 291 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 368 (764)
.++..+.+.|+. ++.=+++.... .++||. ...-.+..+....|++..|..--+.... ..|....|..
T Consensus 299 -------a~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lL 367 (531)
T COG3898 299 -------ALLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLL 367 (531)
T ss_pred -------HHHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHH
Confidence 233445555554 33333333221 134443 4555666777778888777765555443 4567777777
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHhhCC
Q 004269 369 LSVECSK-ALELDLAEALLDQISRCT 393 (764)
Q Consensus 369 li~~~~~-~g~~~~a~~~~~~~~~~~ 393 (764)
|.+.-.- .|+-.++...+.+....+
T Consensus 368 lAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 368 LADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHhhccCchHHHHHHHHHHhcCC
Confidence 7776544 488888888888877665
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.009 Score=44.16 Aligned_cols=63 Identities=24% Similarity=0.373 Sum_probs=35.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004269 590 LDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFV 655 (764)
Q Consensus 590 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 655 (764)
.+.|++++|+++|+++.... +-+...+..+...|.+.|++++|.++++++.. ..|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHH
Confidence 34566666666666665432 22555556666666666666666666666664 34554444433
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.14 Score=42.46 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=52.2
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHH
Q 004269 517 HSLVEAQESHRAMEIFKQMKTCGIPPNA--ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ----TMTYTALIKILL 590 (764)
Q Consensus 517 ~~~~~~~~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~----~~~~~~li~~~~ 590 (764)
.++-..|+.++|+.+|++....|..... ..+..+-..+...|++++|..+++...... |+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 4455667777777777777776654432 234445556667777777777777666542 22 111122334556
Q ss_pred hcCCHHHHHHHHHHHH
Q 004269 591 DYGDFDEALNLLDLVS 606 (764)
Q Consensus 591 ~~g~~~~A~~~~~~m~ 606 (764)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6677777777765544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.073 Score=44.17 Aligned_cols=86 Identities=19% Similarity=0.135 Sum_probs=50.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHH-HHHH
Q 004269 586 IKILLDYGDFDEALNLLDLVSLEGIPHD--VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD---PSTCHFV-FSGY 659 (764)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l-l~~~ 659 (764)
..++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..++++.... .|+ ......+ .-++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence 3455556777777777777766665443 234555666667777777777777766642 233 2222222 2355
Q ss_pred HhcCChHHHHHHHH
Q 004269 660 VNCGFHNSAMEALQ 673 (764)
Q Consensus 660 ~~~g~~~~a~~~~~ 673 (764)
...|+.++|++.+-
T Consensus 86 ~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 86 YNLGRPKEALEWLL 99 (120)
T ss_pred HHCCCHHHHHHHHH
Confidence 66677777766554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.046 Score=51.89 Aligned_cols=99 Identities=8% Similarity=0.052 Sum_probs=61.5
Q ss_pred HHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 004269 554 CSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHD-VLLYNTILKKACEKGRIDV 632 (764)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~ 632 (764)
..+.+++.+|+..|.+.++.. +-|.+.|..=..+|.+.|.++.|++=.+..+.. .|. ..+|..|-.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 445566777777777766642 224455555566677777777777666665532 332 3466677777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 633 IEFIIEQMHQNKVQPDPSTCHFVFS 657 (764)
Q Consensus 633 a~~~~~~m~~~~~~p~~~~~~~ll~ 657 (764)
|++.|++.++ +.|+..+|..-+.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHH
Confidence 7777777663 6677666655444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.16 Score=50.34 Aligned_cols=60 Identities=15% Similarity=0.116 Sum_probs=27.2
Q ss_pred HHHHHHHhhCC-CChhHHHHHHHHHHHc----Cccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 004269 90 FFHILNYCARS-PDPLFVMETWRMMEEK----EIGL-NNKCYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 90 ~~~ll~~~~~~-~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 149 (764)
+..+...|-.. |+++.|.+.|++..+. |.+. -..++..+...+.+.|++++|.++|+++.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44455555555 5555555555554432 1000 12234445555555555555555555553
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.02 Score=42.43 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=48.0
Q ss_pred ChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccC-CHHHHHHHHHHHHH
Q 004269 192 NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR-DLKSAYETLQHMVA 255 (764)
Q Consensus 192 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~ 255 (764)
+..+|..+-..+...|++++|...|++.++..+.+...+..+..+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34556666667777777777777777777777777777888888888888 68888888887766
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.013 Score=43.22 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=33.9
Q ss_pred hhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
..|++++|.++++.+.+..|.+..++..+..+|.+.|++++|..+++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666666666666666666666677777777777777777776665
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.062 Score=45.10 Aligned_cols=83 Identities=14% Similarity=0.177 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHH--------------hhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc
Q 004269 122 NKCYLLMMQALCKGGYLEEASNLIYFL--------------GERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m--------------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
..++..+|.++++.|+++....+++.. ....+..|+..+..+++.+|+.+|++..|+++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 345555666666666666666655543 223345566666677777777777777777777666543
Q ss_pred -CCCCChhhHHHHHHHHH
Q 004269 188 -MVGKNEVTYTELLKLAV 204 (764)
Q Consensus 188 -g~~p~~~t~~~ll~~~~ 204 (764)
+++.+..+|..|++.+.
T Consensus 82 Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 55556666666666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.023 Score=41.51 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=30.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004269 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
...+.+.|++++|.+.|+.+++.. +-+...+..+...+...|++++|...|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555566666666666665432 22444555555666666666666666666553
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.38 Score=51.76 Aligned_cols=137 Identities=7% Similarity=-0.138 Sum_probs=76.4
Q ss_pred CCCChhcHHHHHHHhhCC-----CChhHHHHHHHHHHHcCccccHHHHHHHHHHHHcc--------CCHHHHHHHHHHHh
Q 004269 83 HSLGADDFFHILNYCARS-----PDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKG--------GYLEEASNLIYFLG 149 (764)
Q Consensus 83 ~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~ 149 (764)
.+.+...|...+++.... ++...|+++|++..+.+ +-....|..+..+|... .++..+.+..++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 356667777777764432 23557888888888774 22333444433333221 11223333333322
Q ss_pred hhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhc
Q 004269 150 ERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH 222 (764)
Q Consensus 150 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 222 (764)
.....+.+...|..+.-.+...|++++|...|++..... |+...|..+.+.+...|+.++|.+.+++....
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 111122333456666555555677777777777777643 56666777777777777777777777666553
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.74 Score=40.55 Aligned_cols=134 Identities=12% Similarity=0.051 Sum_probs=104.9
Q ss_pred CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHH
Q 004269 540 IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE---GIPHDVLL 616 (764)
Q Consensus 540 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~ 616 (764)
+.|+...--.|-.+....|+..+|...|++...--+.-|....-.+.++....+++.+|...++.+.+. +-.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 467777777888899999999999999999887767778888888888999999999999999988764 22344 4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 617 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
.-.+.+.+...|+...|+..|+...+ .-|+...-...-..+.+.|+.+++..-+..+..
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 55677888899999999999999986 556655444445567888988888766555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.8 Score=42.71 Aligned_cols=177 Identities=11% Similarity=0.021 Sum_probs=82.9
Q ss_pred HHhhCCCChhHHHHHHHHHHHcC--ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC
Q 004269 95 NYCARSPDPLFVMETWRMMEEKE--IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172 (764)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 172 (764)
..+...|++..|.+.|+.+.... .+--....-.++.++-+.|+++.|...+++..+..+-.|.. .+...+.+.+...
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHHHHH
Confidence 33445677777777777777642 11123344456666777777777777777766554333321 2222233322111
Q ss_pred CHHHHHHHHHHHhhcCCCCCh-------hhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHH
Q 004269 173 SMVHANLCLDLMDSRMVGKNE-------VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 245 (764)
...... ....|. .++..++.-|=.+.-...|...+..+..... ..--.+...|.+.|.+..
T Consensus 92 ~~~~~~---------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la---~~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 92 QIPGIL---------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLA---EHELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHH---HHHHHHHHHHHCTT-HHH
T ss_pred hCccch---------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcccHHH
Confidence 111110 000011 1222222222223333333333222221100 011124567889999999
Q ss_pred HHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHH
Q 004269 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE 313 (764)
Q Consensus 246 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 313 (764)
|..-++.+.+. -|+.... ..+.-.++.+|.+.|..+.+.
T Consensus 160 A~~r~~~v~~~--yp~t~~~---------------------------~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 160 AIIRFQYVIEN--YPDTPAA---------------------------EEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHH--STTSHHH---------------------------HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHH--CCCCchH---------------------------HHHHHHHHHHHHHhCChHHHH
Confidence 99999999883 3333111 136667888888888877443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.63 Score=48.97 Aligned_cols=271 Identities=14% Similarity=0.131 Sum_probs=132.9
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHH
Q 004269 326 PSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAAC 405 (764)
Q Consensus 326 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~ 405 (764)
|....+.+=+-.+...|.+++|.++- -.|+ ...-+.-|..-....-+++-|++.+.++...
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~ia----clgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl------------- 614 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIA----CLGV--TDTDWRELAMEALEALDFETARKAYIRVRDL------------- 614 (1081)
T ss_pred cccccccccchhhhhccchhhhhccc----ccce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhcc-------------
Confidence 44445555555666777777765531 1122 1222333333333333444444444333322
Q ss_pred HhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 004269 406 DTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLL 484 (764)
Q Consensus 406 ~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 484 (764)
.+-+.+.-+++|++ |-.|+....... |+-.|.+.++.++|..-+...++.+.+-+|.-. -++
T Consensus 615 ----~~L~li~EL~~~k~rge~P~~iLlA~~---~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF----------D~a 677 (1081)
T KOG1538|consen 615 ----RYLELISELEERKKRGETPNDLLLADV---FAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF----------DYA 677 (1081)
T ss_pred ----HHHHHHHHHHHHHhcCCCchHHHHHHH---HHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH----------HHH
Confidence 23344455666777 777777654433 344455555555554433333333222211100 012
Q ss_pred HHHHhcCcHHHHHHHHHhcCC-CCChhhHHHHHHHHHHcCChHHHHHHHHH-----H-HhCCCC---CCHHHHHHHHHHH
Q 004269 485 KALGAEGMIRELIQYFCDSKT-PLGTPTYNTVLHSLVEAQESHRAMEIFKQ-----M-KTCGIP---PNAATYNIMIDCC 554 (764)
Q Consensus 485 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~l~~~-----m-~~~g~~---p~~~t~~~ll~~~ 554 (764)
.-|...|..++-..+.++... ..++.---+....+...|+..+|..+.-+ | .+-+-+ .+..+...+...+
T Consensus 678 QE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~yl 757 (1081)
T KOG1538|consen 678 QEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYL 757 (1081)
T ss_pred HHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHH
Confidence 222333333322222221100 00110111233444555666666654321 1 111111 2334444444445
Q ss_pred HhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHH
Q 004269 555 SIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVL-----------LYNTILKK 623 (764)
Q Consensus 555 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-----------~~~~li~~ 623 (764)
-+...+..|-++|..|-+. ..+++.....+++++|..+-++..+ +.||+. -|.-.-.+
T Consensus 758 k~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkA 826 (1081)
T KOG1538|consen 758 KKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKA 826 (1081)
T ss_pred hhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHH
Confidence 5566677788888877542 3467778888999999988887653 345543 23445567
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 004269 624 ACEKGRIDVIEFIIEQMHQN 643 (764)
Q Consensus 624 ~~~~g~~~~a~~~~~~m~~~ 643 (764)
|.++|+-.+|..+++++...
T Consensus 827 fhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 827 FHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHhcchHHHHHHHHHhhhh
Confidence 88888888888888887653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.96 E-value=2.4 Score=46.50 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=38.6
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHH
Q 004269 134 KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVH 213 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 213 (764)
+.|++++|...+-+-.. -+.|+ .++.-|....+...-...++.+.+.|+. +...-..|+.+|.+.++.+...
T Consensus 380 ~Kgdf~~A~~qYI~tI~--~le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 380 GKGDFDEATDQYIETIG--FLEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred hcCCHHHHHHHHHHHcc--cCChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 45666666555544321 11221 2444444455555555555555555554 3333355556666666665555
Q ss_pred HHHHHH
Q 004269 214 EIWEDY 219 (764)
Q Consensus 214 ~~~~~~ 219 (764)
++.+..
T Consensus 452 efI~~~ 457 (933)
T KOG2114|consen 452 EFISKC 457 (933)
T ss_pred HHHhcC
Confidence 544433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.23 Score=43.50 Aligned_cols=71 Identities=17% Similarity=-0.016 Sum_probs=51.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhh-----cCCCCChhhH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS-----RMVGKNEVTY 196 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~ 196 (764)
+...++..+...|++++|..+.+.+...+ +-+...|..+|.+|...|+...|.+.|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 56677778888999999999999887655 44777899999999999999999999988754 3778877653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.038 Score=40.88 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 004269 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKG-RIDVIEFIIEQMH 641 (764)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 641 (764)
.|..+...+...|++++|+..|++.++.. +.+...|..+..+|...| ++++|++.+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444444444444444321 123334444444444444 3444444444443
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.81 Score=37.76 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=85.8
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHH
Q 004269 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (764)
.|..++..++..+..... +..-||.+|--....-+-+-..++++.+..-+.+.|- .-...++..|++.|.
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~------ 84 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK------ 84 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-------
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc------
Confidence 477888888888877653 4555666665555555566677777777544322210 112334444544443
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhcc
Q 004269 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM 259 (764)
Q Consensus 180 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 259 (764)
+..-....+.....+|.-++-.+++..+.+...+++...-.+..+|.+.|+..++.+++.+.-++|++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33344556677788888899999999988888889999999999999999999999999999998865
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.13 Score=49.75 Aligned_cols=99 Identities=11% Similarity=-0.040 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhhcChhHHHHHHHHHHhcCCCC---HhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccc
Q 004269 195 TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS---IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGR 271 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (764)
.|...+....+.|++++|...|+.+++.+|.+ +.++..+..+|...|+++.|...|+.+.+. .|+.+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~------ 216 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKA------ 216 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcch------
Confidence 34444444445566777777777766655444 245566666677777777777777777652 2322100
Q ss_pred ccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
...+-.+...+...|+.+.|..+|++..+.
T Consensus 217 ---------------------~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 217 ---------------------ADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred ---------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 024444455566667777777777766654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.085 Score=44.26 Aligned_cols=53 Identities=13% Similarity=0.185 Sum_probs=47.3
Q ss_pred CccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004269 117 EIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 117 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 169 (764)
...|+..+..+++.+|+..|++..|.++++...+.++++.+...|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999888899999987543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.78 E-value=2.3 Score=42.02 Aligned_cols=61 Identities=10% Similarity=-0.097 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhhcChh---HHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 195 TYTELLKLAVWQKNLS---AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
++..+..++...+..+ +|.++++.+.+.++..+.++-.-+.++.+.++.+.+.+++.+|..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 3444555555544433 344444444444444444454555555556666667677666665
|
It is also involved in sporulation []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.5 Score=47.96 Aligned_cols=75 Identities=9% Similarity=0.068 Sum_probs=50.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCC
Q 004269 368 TLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVN 443 (764)
Q Consensus 368 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~ 443 (764)
-++..+....+.+.+..+.+...+. ++..|-.+++.|++.+..+...+...+..+ -..-+...-..+++.+++.+
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~ 785 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNG 785 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCC
Confidence 5677778888888888888888877 889999999999999876666555554443 11112222234455555544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.07 Score=52.62 Aligned_cols=268 Identities=8% Similarity=-0.129 Sum_probs=138.8
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCCh----hcHHHHHHHhhCCCChhHHHHHHHHHHH----cCc-cccHHHHHHHH
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGA----DDFFHILNYCARSPDPLFVMETWRMMEE----KEI-GLNNKCYLLMM 129 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~-~~~~~~~~~li 129 (764)
..-+++.|+.+.-+.+|+...+.|. -|. ..|..|.++|.-.+|++.|++++..=+. .|- .-...+...|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 4568899999999999999998773 333 3477777888888999999888754221 110 11222333445
Q ss_pred HHHHccCCHHHHHHHHHHHhh---h--cCCCCChhhhHHHHHHHhccCCH--------------------HHHHHHHHHH
Q 004269 130 QALCKGGYLEEASNLIYFLGE---R--YGIYPILPVYNSFLGACAKLHSM--------------------VHANLCLDLM 184 (764)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~m~~---~--~~~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m 184 (764)
+.+--.|.+++|.....+-.. . +.+. ....+..|..+|...|+. +.|.+.|.+=
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~-e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVL-ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHh-hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 555556677777554322111 0 0011 112344466666554432 3333333321
Q ss_pred ----hhcCC-CCChhhHHHHHHHHHhhcChhHHHHHHHHHHh---cC---CCCHhhHHHHHHHhhccCCHHHHHHHHHHH
Q 004269 185 ----DSRMV-GKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK---HY---SLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253 (764)
Q Consensus 185 ----~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 253 (764)
.+.|- ......|..|-..|.-.|+++.|...++.-+. .+ .....++..+.++++-.|+++.|.+.|+..
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 11110 01112344444455556667776666554432 11 122345666666777777777777766664
Q ss_pred HHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC----C-CCCCc
Q 004269 254 VALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL----G-LQPSS 328 (764)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g-~~p~~ 328 (764)
....+.-.. +.+.+.+.-+|...|.-...+++|+.++.+-... + ..-..
T Consensus 262 l~LAielg~--------------------------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 262 LNLAIELGN--------------------------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HHHHHHhcc--------------------------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 432222111 1111234445666666666666666666543321 0 11123
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHH
Q 004269 329 HTYDGFIRAIVSDRGLRNGMEVLKIM 354 (764)
Q Consensus 329 ~~~~~ll~~~~~~~~~~~a~~~~~~~ 354 (764)
..+.+|-.++...|.-+.|+.+.+.-
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45556666666666666665554443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.63 Score=44.70 Aligned_cols=33 Identities=6% Similarity=-0.045 Sum_probs=15.3
Q ss_pred CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 223 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.|.|...|-.|..+|...|+.+.|...|....+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 344444444444444444444444444444444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.67 E-value=2.6 Score=41.94 Aligned_cols=285 Identities=16% Similarity=0.054 Sum_probs=179.6
Q ss_pred hhHHHHHHHHHHHcCccccHHHHHHHHHHHH--ccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh--ccCCHHHHH
Q 004269 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALC--KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA--KLHSMVHAN 178 (764)
Q Consensus 103 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~ 178 (764)
+..+.+.|..-++. .-|..|-.++. ..|+-..|.++-.+-. .-+..|....-.|+.+-. -.|+++.|.
T Consensus 69 P~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~--~llssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 69 PYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARAS--KLLSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred cHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHH--hhhhccchHHHHHHHHHHHHhcCchHHHH
Confidence 44455555544432 24555555554 4678888888776553 234456666666666543 359999999
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHH----HHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004269 179 LCLDLMDSRMVGKNEVTYTELLKL----AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 179 ~~~~~m~~~g~~p~~~t~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 254 (764)
+-|+.|.. |..|-..=+++ .-+.|+.+.|.++-+.....-+.-.+.+...+...+..|+++.|+++.+.-.
T Consensus 141 ~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 141 KKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 99999987 44444333333 3467888999888888887778888999999999999999999999999877
Q ss_pred HhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHH---ccCCHHHHHHHHHHHHHCCCCCCcccH
Q 004269 255 ALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG---RTQNSGLAEQLMLQMQSLGLQPSSHTY 331 (764)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~ 331 (764)
+..+....... ..-..|+.+-. -..+...|...-.+..+ +.||..--
T Consensus 216 ~~~vie~~~ae----------------------------R~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPa 265 (531)
T COG3898 216 AAKVIEKDVAE----------------------------RSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPA 265 (531)
T ss_pred HHHhhchhhHH----------------------------HHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchH
Confidence 64332221100 11122222211 12345556555555444 46776533
Q ss_pred -HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH----HHHHHHhhCCCCccHHHHHHHHH
Q 004269 332 -DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE----ALLDQISRCTNPKPFSAFLAACD 406 (764)
Q Consensus 332 -~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~----~~~~~~~~~~~~~~~~~li~~~~ 406 (764)
...-+++.+.|++.++-.+++.+-+....|+.. ++-.+.+.|+..... +-+..|+.. +..+--++..+-.
T Consensus 266 av~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~n-naes~~~va~aAl 340 (531)
T COG3898 266 AVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPN-NAESSLAVAEAAL 340 (531)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHH
Confidence 233467889999999999999999887776542 222345566543221 223444444 6666667777778
Q ss_pred hcCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 004269 407 TMDKPERAIKIFAKMRQKLRPDIRTYELLF 436 (764)
Q Consensus 407 ~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll 436 (764)
..|++..|..--+.... ..|....|..+-
T Consensus 341 da~e~~~ARa~Aeaa~r-~~pres~~lLlA 369 (531)
T COG3898 341 DAGEFSAARAKAEAAAR-EAPRESAYLLLA 369 (531)
T ss_pred hccchHHHHHHHHHHhh-hCchhhHHHHHH
Confidence 88888877765544433 567777766554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=3.8 Score=43.89 Aligned_cols=332 Identities=12% Similarity=0.092 Sum_probs=161.5
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 004269 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ-NNLKP--------QDSTIATLSVECSKALELDLAEALLDQISRCTNP 395 (764)
Q Consensus 325 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 395 (764)
.|-+..|..+.......-.++.|...|-.... .|++. +...-.+=+.+| -|++++|++++-.+..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh---
Confidence 56777787777776676777777777655543 12221 111111112222 37788888887777655
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHH-HHHH-----HH-
Q 004269 396 KPFSAFLAACDTMDKPERAIKIFAKMRQK--LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKR-INAI-----EM- 466 (764)
Q Consensus 396 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~--~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~- 466 (764)
...|..+.+.|++-...++++.--.+ -.--...++.+-..++....++++.+.+..-...+. +..+ +.
T Consensus 764 ---DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~ 840 (1189)
T KOG2041|consen 764 ---DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGE 840 (1189)
T ss_pred ---hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhh
Confidence 22344455555555555544321110 000011222222222222233333332221111111 1110 01
Q ss_pred -HHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 004269 467 -DMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545 (764)
Q Consensus 467 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~ 545 (764)
+.....++.+....-.+.+++.+.|--++|.+.|-+...+ -+.+.+|...+++.+|.++-+...- |...
T Consensus 841 LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p------kaAv~tCv~LnQW~~avelaq~~~l----~qv~ 910 (1189)
T KOG2041|consen 841 LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP------KAAVHTCVELNQWGEAVELAQRFQL----PQVQ 910 (1189)
T ss_pred HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCc------HHHHHHHHHHHHHHHHHHHHHhccc----hhHH
Confidence 1223345566677778888999999888888887665332 2345667777888888887766432 2222
Q ss_pred HHH--------------HHHHHHHhhCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHH---------------Hhc
Q 004269 546 TYN--------------IMIDCCSIIRCFKSASALVSMMVRD----GFYPQTMTYTALIKIL---------------LDY 592 (764)
Q Consensus 546 t~~--------------~ll~~~~~~g~~~~a~~~~~~~~~~----g~~p~~~~~~~li~~~---------------~~~ 592 (764)
|.. -.|..+.+.|..-.|-+++.+|.+. +.+|-..---.++.++ -+.
T Consensus 911 tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~ 990 (1189)
T KOG2041|consen 911 TLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKH 990 (1189)
T ss_pred HHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 221 1233345556555555565555532 3333221111111111 134
Q ss_pred CCHHHHHHHHHHHHHC---CCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 004269 593 GDFDEALNLLDLVSLE---GIP------HDVLLYNTILKKACEKGRIDVIEFIIEQMHQN-KVQPDPSTCHFVFSGYVNC 662 (764)
Q Consensus 593 g~~~~A~~~~~~m~~~---~~~------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~ 662 (764)
|..++|.++++..... .+. ...+.|-.|..-....|.++.|.+..-.+.+. .+-|....|..|.-+-+..
T Consensus 991 g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~ 1070 (1189)
T KOG2041|consen 991 GFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAV 1070 (1189)
T ss_pred CcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhh
Confidence 6666676655543211 010 12234445555556778888888766555543 4566666665544443444
Q ss_pred CChHHHHHHHHH
Q 004269 663 GFHNSAMEALQV 674 (764)
Q Consensus 663 g~~~~a~~~~~~ 674 (764)
..+...-+.|-+
T Consensus 1071 raFGtCSKAfmk 1082 (1189)
T KOG2041|consen 1071 RAFGTCSKAFMK 1082 (1189)
T ss_pred hhhhhhHHHHHH
Confidence 444444344433
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.1 Score=45.38 Aligned_cols=76 Identities=9% Similarity=-0.065 Sum_probs=38.7
Q ss_pred HHHHHHHhhCCcchHHHHHHhccccCC---CCChhcHHHHHHHhhC---CCChhHHHHHHHHHHHcCccccHHHHHHHHH
Q 004269 57 MQIVDALCRGERSRASHLLLNLGHAHH---SLGADDFFHILNYCAR---SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130 (764)
Q Consensus 57 ~~i~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 130 (764)
.++.+|....+|+..+++.+.+..... .-....-....-++.+ .|+.+.|++++..+......+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 344556666666666666666654311 1111111111222233 5666666666666555444556666665555
Q ss_pred HH
Q 004269 131 AL 132 (764)
Q Consensus 131 ~~ 132 (764)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 55
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.11 Score=48.68 Aligned_cols=90 Identities=12% Similarity=0.163 Sum_probs=73.9
Q ss_pred CCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCh----------------hHHH
Q 004269 506 PLGTPTYNTVLHSLVEA-----QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCF----------------KSAS 564 (764)
Q Consensus 506 ~~~~~~~~~li~~~~~~-----~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~----------------~~a~ 564 (764)
+.|-.+|-+++..+... +.++-....++.|.+-|+.-|..+|+.||+.+-+.... +-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 55667888888777654 56677777888999999999999999999988765432 2478
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004269 565 ALVSMMVRDGFYPQTMTYTALIKILLDYGDF 595 (764)
Q Consensus 565 ~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 595 (764)
.++++|..+|+.||-.+-..|++++.+.+..
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 9999999999999999999999999988763
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.50 E-value=3.3 Score=42.00 Aligned_cols=147 Identities=14% Similarity=0.251 Sum_probs=112.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHH-HHH
Q 004269 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG-IPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTY-TAL 585 (764)
Q Consensus 508 ~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~-~~l 585 (764)
-+..|...|++..+....+.|..+|-+..+.| +.++...++++|.-++ .|+...|..+|+.=... + ||...| +-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f-~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-F-PDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-C-CCchHHHHHH
Confidence 35578888998888889999999999999998 6788889999998766 58888999999765543 2 444333 567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004269 586 IKILLDYGDFDEALNLLDLVSLEGIPHD--VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660 (764)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 660 (764)
+.-+.+-++-+.|..+|+..... +..+ ..+|..+|+--..-|+...+..+-++|.+ +-|-..+.....+-|.
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 77788889999999999965532 2223 45899999988899999999988888885 5566655555555444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.49 E-value=3.1 Score=42.18 Aligned_cols=97 Identities=9% Similarity=-0.087 Sum_probs=63.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcC--CCCChhhhHHHHHHHhc---cCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 004269 125 YLLMMQALCKGGYLEEASNLIYFLGERYG--IYPILPVYNSFLGACAK---LHSMVHANLCLDLMDSRMVGKNEVTYTEL 199 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 199 (764)
...++-+|-...+++..+++.+.+..-.. +..+...--...-++.+ .|+.++|+.++..+....-.++..||..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 33555578899999999999999854211 11111122233445566 79999999999997666667888888888
Q ss_pred HHHHHh---------hcChhHHHHHHHHHHh
Q 004269 200 LKLAVW---------QKNLSAVHEIWEDYIK 221 (764)
Q Consensus 200 l~~~~~---------~~~~~~a~~~~~~~~~ 221 (764)
.+.|-. ...+++|...|.+.-+
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 776643 1224566666655443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.49 E-value=3.2 Score=41.73 Aligned_cols=85 Identities=12% Similarity=0.027 Sum_probs=45.1
Q ss_pred HhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHH--HHHHhcCCHHH
Q 004269 339 VSDRGLRNGMEVLKIMQQNN---LKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFL--AACDTMDKPER 413 (764)
Q Consensus 339 ~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li--~~~~~~~~~~~ 413 (764)
.+.|++..|.+.|.+.+... ..|+...|-.......+.|+..+|+.--++.....+..++.-+. .++.-.+++++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666665432 33444445555555566667776666666665542222222222 22334456666
Q ss_pred HHHHHHHHhc
Q 004269 414 AIKIFAKMRQ 423 (764)
Q Consensus 414 a~~l~~~m~~ 423 (764)
|++-|++..+
T Consensus 340 AV~d~~~a~q 349 (486)
T KOG0550|consen 340 AVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHh
Confidence 6666666554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.21 Score=48.30 Aligned_cols=96 Identities=13% Similarity=0.041 Sum_probs=60.3
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCC---HhhHHHHH
Q 004269 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN--EVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS---IFSLRKFV 234 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li 234 (764)
.|+..+..+.+.|++++|...|+.+.+.-+... ..++..+...|...|+++.|...|+.+.+.++.+ ..++..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556777777777777766532211 2355566666777777777777777777654443 33444455
Q ss_pred HHhhccCCHHHHHHHHHHHHH
Q 004269 235 WSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~~~~ 255 (764)
..+...|+.+.|.++|+.+.+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666777888888888887776
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.094 Score=45.96 Aligned_cols=68 Identities=28% Similarity=0.441 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 004269 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ-----NKVQPDPST 651 (764)
Q Consensus 583 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 651 (764)
..++..+...|++++|..+.+++.... +-|...|..+|.+|...|+...|.++|+++.. .|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 345555556666666666666665432 23555666666666666666666666665542 356665554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.32 E-value=3.9 Score=41.69 Aligned_cols=140 Identities=10% Similarity=0.010 Sum_probs=86.2
Q ss_pred HHHhhCCcchHHHHHHhccccCCCCCh------hcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH--H
Q 004269 61 DALCRGERSRASHLLLNLGHAHHSLGA------DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA--L 132 (764)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~ 132 (764)
.+-++++..+|..+|.++...- .-++ ..-+.++++|..+ +.+.....+....+.- | ...|-.+..+ +
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHH
Confidence 3557899999999999886542 2222 2246678888754 4555555555555431 2 2233333333 3
Q ss_pred HccCCHHHHHHHHHHHhhhc-CC------------CCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCC----CChhh
Q 004269 133 CKGGYLEEASNLIYFLGERY-GI------------YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG----KNEVT 195 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~m~~~~-~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t 195 (764)
-+.+.+.+|.+.|......- +. -+|...-+..+..+...|++.++..++++|...=++ -+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 36788999999887664320 11 112223356677788899999999998888765333 67778
Q ss_pred HHHHHHHHHh
Q 004269 196 YTELLKLAVW 205 (764)
Q Consensus 196 ~~~ll~~~~~ 205 (764)
|+.++-.+.+
T Consensus 170 yd~~vlmlsr 179 (549)
T PF07079_consen 170 YDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHhH
Confidence 8875554443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.054 Score=40.62 Aligned_cols=52 Identities=17% Similarity=0.015 Sum_probs=25.1
Q ss_pred hhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 004269 97 CARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 149 (764)
+.+.++++.|.++++.+.+.+ +.++..+......+.+.|++++|.+.|+...
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344455555555555555443 2344444444444555555555555555444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.14 E-value=3 Score=39.35 Aligned_cols=56 Identities=7% Similarity=-0.079 Sum_probs=30.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHH
Q 004269 299 VIHACGRTQNSGLAEQLMLQMQSLGLQPSSH---TYDGFIRAIVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 299 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~ 355 (764)
+.+-|.+.|.+..|..-+++|.+. .+-+.. .+-.+..+|-..|-.++|...-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 345566666666666666666654 221222 23444556666666666665544443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.10 E-value=4.2 Score=40.90 Aligned_cols=263 Identities=10% Similarity=-0.079 Sum_probs=145.6
Q ss_pred HHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhc
Q 004269 10 FQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADD 89 (764)
Q Consensus 10 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 89 (764)
.+.....+-++.++.+|+ ..|....+..|+... .|......+..-+++++|.--.+.-.+.. +-....
T Consensus 52 ~k~~gn~~yk~k~Y~nal----------~~yt~Ai~~~pd~a~-yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~ 119 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNAL----------KNYTFAIDMCPDNAS-YYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKG 119 (486)
T ss_pred HHhhcchHHHHhhHHHHH----------HHHHHHHHhCccchh-hhchhHHHHHHHHhHhhcccchhhheecC-CCcccc
Confidence 334445566667777777 555666666777633 34444556677777777776665554432 112223
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHH---------------HcC-ccccHHHHHHHH-HHHHccCCHHHHHHHHHHHhhhc
Q 004269 90 FFHILNYCARSPDPLFVMETWRMME---------------EKE-IGLNNKCYLLMM-QALCKGGYLEEASNLIYFLGERY 152 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~m~---------------~~~-~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~ 152 (764)
+...-+++...++...|.+.++.-. ... -+|.-..|..+- ..+.-.|+.++|...--.+.+-+
T Consensus 120 ~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld 199 (486)
T KOG0550|consen 120 QLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD 199 (486)
T ss_pred ccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc
Confidence 4444444444444444444333211 111 123333443332 23445688888877766665432
Q ss_pred CCCCChhhhHHHHHHHh--ccCCHHHHHHHHHHHhhcCCCCChhhHHH---HHH----------HHHhhcChhHHHHHHH
Q 004269 153 GIYPILPVYNSFLGACA--KLHSMVHANLCLDLMDSRMVGKNEVTYTE---LLK----------LAVWQKNLSAVHEIWE 217 (764)
Q Consensus 153 ~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~----------~~~~~~~~~~a~~~~~ 217 (764)
....+...+++.+ -.++.+.|..-|++-...+ |+...--. ..+ -..+.|++..|.+.|.
T Consensus 200 ----~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yt 273 (486)
T KOG0550|consen 200 ----ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYT 273 (486)
T ss_pred ----cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHH
Confidence 2234555555443 3577788888888776643 43332211 122 2235677778888888
Q ss_pred HHHhc----CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhh
Q 004269 218 DYIKH----YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR 293 (764)
Q Consensus 218 ~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (764)
+.+.. ..++...|.....+..+.|+.++|+.--+...+ +++.- .
T Consensus 274 eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~sy------------------------------i 321 (486)
T KOG0550|consen 274 EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSY------------------------------I 321 (486)
T ss_pred HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHH------------------------------H
Confidence 77753 455666677777777888888888777776665 33321 0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 294 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
..|---..++...++|++|.+-|+...+.
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12222234455567777777777776654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.081 Score=39.63 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=40.8
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
..|.+.++++.|.++++.+.+..|.++..+.....++...|++++|...|+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3456667777777777777776677777777777778888888888888888776
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.41 Score=47.50 Aligned_cols=230 Identities=10% Similarity=-0.045 Sum_probs=117.0
Q ss_pred HHhhCCCChhHHHHHHHHHHHcCc---cccHHHHHHHHHHHHccCCHHHHHHHHHH-------HhhhcCCCCChhhhHHH
Q 004269 95 NYCARSPDPLFVMETWRMMEEKEI---GLNNKCYLLMMQALCKGGYLEEASNLIYF-------LGERYGIYPILPVYNSF 164 (764)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------m~~~~~~~~~~~~~~~l 164 (764)
.-+++.|+.+....+|+..++-|. ..=..+|..|.++|.-.+++++|.++..- |..+.| ...+...|
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklG---EAKssgNL 101 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLG---EAKSSGNL 101 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhc---cccccccc
Confidence 346788999999999999999873 22234778888888889999999886531 211212 11223334
Q ss_pred HHHHhccCCHHHHHHHHHH----HhhcCCC-CChhhHHHHHHHHHhhcC--------------------hhHHHHHHHHH
Q 004269 165 LGACAKLHSMVHANLCLDL----MDSRMVG-KNEVTYTELLKLAVWQKN--------------------LSAVHEIWEDY 219 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~----m~~~g~~-p~~~t~~~ll~~~~~~~~--------------------~~~a~~~~~~~ 219 (764)
-+.+--.|.+++|+-.-.. .++.|-. .....+..+-..|...|. ++.|.++|..-
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 4444455666666543222 1221111 122233344444443332 12222333222
Q ss_pred Hhc------CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhh
Q 004269 220 IKH------YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR 293 (764)
Q Consensus 220 ~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (764)
++- -..-...|..|.+.|.-.|+++.|+...+.-.+......+ +....
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD--------------------------rAaeR 235 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD--------------------------RAAER 235 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh--------------------------HHHHH
Confidence 210 0111234556666666777777777666554331111111 00012
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHH----CCC-CCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 004269 294 WSFSDVIHACGRTQNSGLAEQLMLQMQS----LGL-QPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353 (764)
Q Consensus 294 ~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 353 (764)
.++..+..++.-.|+++.|.+.|+.-.. .|- .......-+|-+.|.-...+++|..++..
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777776665432 110 11122333444555555555555555543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.02 E-value=1.3 Score=42.73 Aligned_cols=100 Identities=13% Similarity=0.027 Sum_probs=81.2
Q ss_pred CCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh---hcChhHHHHHHHHHHhcCCCCHhhHH
Q 004269 155 YPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW---QKNLSAVHEIWEDYIKHYSLSIFSLR 231 (764)
Q Consensus 155 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (764)
+-|...|-.|...|...|+.+.|..-|....+.. .++...+..+-.++.. ..+-.++.++++++++..+.|+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4577789999999999999999999999988752 2244444444444433 33456899999999999999999999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHH
Q 004269 232 KFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 232 ~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.|...+...|++.+|...|+.|..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 999999999999999999999998
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.98 E-value=1.3 Score=40.96 Aligned_cols=209 Identities=11% Similarity=0.042 Sum_probs=105.0
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHH
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 168 (764)
.|.....+|....+++.|...+.+..+. .+.|...|.+ ..+ ++.|.-+.++|.+- +--+..|+.-...|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-AKa------yEqaamLake~~kl---sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-AKA------YEQAAMLAKELSKL---SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-HHH------HHHHHHHHHHHHHh---HHHHHHHHHHHHHH
Confidence 4555566666667777777766665532 2233333322 222 35555555555321 11133566677778
Q ss_pred hccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcC------CCCHhhHHHHHHHhhccCC
Q 004269 169 AKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY------SLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~li~~~~~~g~ 242 (764)
..+|..+.|-..++..-+. ...-+.+.|.++|.+...-+ ..-...+...-+++.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 8888877777666654331 12223334444444333211 1111223344456677777
Q ss_pred HHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 243 LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 243 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
+++|-..|.+-......-+..... --.|-+.|-.+....++..|...++.--+.
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~--------------------------~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQ--------------------------CKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccH--------------------------HHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 777665555433221111110000 023555666667777788888877774433
Q ss_pred C---CCCCcccHHHHHHHHHhcCChhHHHHHH
Q 004269 323 G---LQPSSHTYDGFIRAIVSDRGLRNGMEVL 351 (764)
Q Consensus 323 g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 351 (764)
+ -.-|..+...||.+| ..|+.+++..+.
T Consensus 220 p~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 220 PAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred ccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 2 122344566666655 455666555443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.80 E-value=1.2 Score=47.51 Aligned_cols=93 Identities=14% Similarity=0.015 Sum_probs=46.7
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHhhc-CCCCChh------hHHHHHHHHHh----hcChhHHHHHHHHHHhcCCCCHhh
Q 004269 161 YNSFLGACAKLHSMVHANLCLDLMDSR-MVGKNEV------TYTELLKLAVW----QKNLSAVHEIWEDYIKHYSLSIFS 229 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~------t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 229 (764)
...++....=.||-+.+++.+....+. ++. ... +|..++..+.. ..+.+.+.+++..+.+.+|.+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lf 269 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALF 269 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHH
Confidence 334444555556666666666654432 111 111 23333333322 234455666666666555555555
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHH
Q 004269 230 LRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 230 ~~~li~~~~~~g~~~~A~~~~~~~~ 254 (764)
.-.-.+.+...|+++.|++.|+...
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 5555555556666666666666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.73 E-value=3.7 Score=38.73 Aligned_cols=179 Identities=12% Similarity=0.051 Sum_probs=92.7
Q ss_pred hHHHHHHHHHhhCCcchHHHHHHhccccCCCCCh---hcHHHHHHHhhCCCChhHHHHHHHHHHHcC-ccccHHHHHHHH
Q 004269 54 ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGA---DDFFHILNYCARSPDPLFVMETWRMMEEKE-IGLNNKCYLLMM 129 (764)
Q Consensus 54 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li 129 (764)
.|-..+..-...|++++|.+.|+.+.... +.++ .+...++-++-+.++++.|+...++..+.. -.||. -|-.-|
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Yl 113 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYL 113 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHH
Confidence 33344556777888888888888887654 3333 334455556667888888888888887764 23333 333334
Q ss_pred HHHHcc-------CCHHHHHH---HHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 004269 130 QALCKG-------GYLEEASN---LIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL 199 (764)
Q Consensus 130 ~~~~~~-------g~~~~A~~---~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 199 (764)
.+++.- .+...+.+ -|+.+.++. || ..-...|..-+..+... =..-=..+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---Pn-------------S~Ya~dA~~~i~~~~d~----LA~~Em~I 173 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PN-------------SRYAPDAKARIVKLNDA----LAGHEMAI 173 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CC-------------CcchhhHHHHHHHHHHH----HHHHHHHH
Confidence 444321 22222222 233333221 22 11111111111111110 00000223
Q ss_pred HHHHHhhcChhHHHHHHHHHHhcCCCCHh---hHHHHHHHhhccCCHHHHHHHHHHHH
Q 004269 200 LKLAVWQKNLSAVHEIWEDYIKHYSLSIF---SLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~ 254 (764)
.+.|.+.|.+..|..-++.+++..+.... .+-.+..+|...|-.++|.+.-.-+.
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 45566777777777777777765444333 34445556777777777766655444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.68 E-value=4.1 Score=40.30 Aligned_cols=148 Identities=11% Similarity=0.121 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--hC----ChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC-
Q 004269 525 SHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI--IR----CFKSASALVSMMVRDGF---YPQTMTYTALIKILLDYGD- 594 (764)
Q Consensus 525 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~g----~~~~a~~~~~~~~~~g~---~p~~~~~~~li~~~~~~g~- 594 (764)
+.+.+.+++.|.+.|++-+..+|-+....... .. ...++..+|+.|.+... .++...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 35667889999999999888888664433332 22 34579999999998732 3455666666544 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH-HH-HHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH-
Q 004269 595 ---FDEALNLLDLVSLEGIPHDVL-LY-NTILKKACEKGR--IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN- 666 (764)
Q Consensus 595 ---~~~A~~~~~~m~~~~~~p~~~-~~-~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~- 666 (764)
.++++.+|+.+...|+..+-. -+ ..++..+..... ..++.++++.+.+.|+++.... ...++.++-.++.+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~-yp~lGlLall~~~~~ 234 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMH-YPTLGLLALLEDPEE 234 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccc-ccHHHHHHhcCCchH
Confidence 466788888888888877432 33 333332222211 4578899999999999888776 45566666555444
Q ss_pred HHHHHHHHH
Q 004269 667 SAMEALQVL 675 (764)
Q Consensus 667 ~a~~~~~~~ 675 (764)
+..+-+.++
T Consensus 235 ~~~~~i~ev 243 (297)
T PF13170_consen 235 KIVEEIKEV 243 (297)
T ss_pred HHHHHHHHH
Confidence 444444443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.13 Score=39.08 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004269 581 TYTALIKILLDYGDFDEALNLLDLVSLE--GIP---HD-VLLYNTILKKACEKGRIDVIEFIIEQMH 641 (764)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~---p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 641 (764)
+|+.+...|...|++++|++.+++..+. ... |+ ..++..+...|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555666666666665555421 011 11 2345555555555555555555555543
|
... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.40 E-value=2.2 Score=45.67 Aligned_cols=164 Identities=17% Similarity=0.113 Sum_probs=114.6
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHHcC-cccc-----HHHHHHHHHHHHc----cCCHHHHHHHHHHHhhhcCCCCCh
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEEKE-IGLN-----NKCYLLMMQALCK----GGYLEEASNLIYFLGERYGIYPIL 158 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~ 158 (764)
.+..++...+-.||-+.+++.+.+..+.+ +... .-.|...+..++. ..+.+.|.++++.+.++ .|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 35667777788899999999888876643 2211 1234444444443 45789999999999866 3676
Q ss_pred hhhHHHH-HHHhccCCHHHHHHHHHHHhhc---CCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHH
Q 004269 159 PVYNSFL-GACAKLHSMVHANLCLDLMDSR---MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234 (764)
Q Consensus 159 ~~~~~li-~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 234 (764)
..|...- +.+...|++++|++.|+..... -.+.....+-.+.-.+...+++++|...+..+.+....+...|.-+.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 6554433 4456679999999999975532 11223344555666788899999999999999987666666666665
Q ss_pred HHh-hccCCH-------HHHHHHHHHHHH
Q 004269 235 WSF-TRLRDL-------KSAYETLQHMVA 255 (764)
Q Consensus 235 ~~~-~~~g~~-------~~A~~~~~~~~~ 255 (764)
.+| ...|+. ++|.++|.+++.
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 544 466777 888999988876
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.38 Score=45.21 Aligned_cols=89 Identities=9% Similarity=0.081 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHHh-----hCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------------HHHH
Q 004269 541 PPNAATYNIMIDCCSI-----IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDF----------------DEAL 599 (764)
Q Consensus 541 ~p~~~t~~~ll~~~~~-----~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~----------------~~A~ 599 (764)
+-|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+=+..-+ +=++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 4466677777666653 356777778889999999999999999999887553311 2356
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 004269 600 NLLDLVSLEGIPHDVLLYNTILKKACEKGR 629 (764)
Q Consensus 600 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 629 (764)
+++++|...|+.||..+-..|+.++.+.+-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 666777767777777766666666655543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.22 E-value=3.9 Score=39.78 Aligned_cols=150 Identities=10% Similarity=0.005 Sum_probs=81.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHH
Q 004269 522 AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYT----ALIKILLDYGDFDE 597 (764)
Q Consensus 522 ~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~----~li~~~~~~g~~~~ 597 (764)
.|+..+|-..++++.+. .+-|.......=++|.-.|+.+.-...++++... ..||...|. .+.-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 46666666666666654 3445555555566677777776666666666543 123332222 22233446677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004269 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN---KVQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674 (764)
Q Consensus 598 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 674 (764)
|++.-++..+-+ +-|.-.-.++...+--.|+..++.++..+-.+. +-..-...|....-.+...+.++.|+++|++
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 777777665432 234444445555555666677766654443221 1111122333344455566777777777764
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.23 Score=37.68 Aligned_cols=68 Identities=7% Similarity=0.045 Sum_probs=49.6
Q ss_pred hhHHHHHHHhhccCCHHHHHHHHHHHHHhhc-cCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHcc
Q 004269 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAM-MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT 306 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 306 (764)
.+++.+..+|...|++++|+..|++..+..- .++. ......+++.+...+...
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------------------------~~~~a~~~~~lg~~~~~~ 59 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD--------------------------HPDTANTLNNLGECYYRL 59 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH--------------------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC--------------------------CHHHHHHHHHHHHHHHHc
Confidence 4677788888899999999999988876411 1111 011136899999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 004269 307 QNSGLAEQLMLQMQS 321 (764)
Q Consensus 307 ~~~~~a~~~~~~m~~ 321 (764)
|++++|++.+++..+
T Consensus 60 g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 60 GDYEEALEYYQKALD 74 (78)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988654
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.9 Score=46.63 Aligned_cols=62 Identities=16% Similarity=-0.004 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHhh
Q 004269 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
...++.+..+|...|++++|+..|++..+. .|+. .+|..+..+|...|++++|+..|+...+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444555555555555444322 1221 2244444445555555555555444444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.49 Score=40.17 Aligned_cols=88 Identities=13% Similarity=0.057 Sum_probs=61.3
Q ss_pred chhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCC--CCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHH
Q 004269 47 NEESISKATQMQIVDALCRGERSRASHLLLNLGHAHH--SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKC 124 (764)
Q Consensus 47 ~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 124 (764)
.|+.+...+-.......+.|++++|++.|+.+...-. +........++.++.+.++++.|...+++.++.+-.....-
T Consensus 5 ~~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 5 VPDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 3554555555667778889999999999999887642 22334466777888899999999999999998753222344
Q ss_pred HHHHHHHHHc
Q 004269 125 YLLMMQALCK 134 (764)
Q Consensus 125 ~~~li~~~~~ 134 (764)
|-..+.+++.
T Consensus 85 Ya~Y~~gL~~ 94 (142)
T PF13512_consen 85 YAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.02 E-value=1.7 Score=37.00 Aligned_cols=54 Identities=20% Similarity=0.041 Sum_probs=22.5
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHHhccCCHHHHHHHHHHHhhc
Q 004269 134 KGGYLEEASNLIYFLGERYGIYPI-LPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+.|++++|++.|+.+..+.+..+- ....-.|+.+|.+.+++++|...+++..+.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344444554444444333221111 112233444444445555555444444443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.99 E-value=3.7 Score=35.48 Aligned_cols=82 Identities=15% Similarity=-0.089 Sum_probs=38.0
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
+..+...+.+..++.+++.+...+ +.++..++.++..|++.+ .....+.+.. ..+......+++.|.+.+-+
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 444445555566666666555544 244455555555555432 2222233221 11222333344455555555
Q ss_pred HHHHHHHHHH
Q 004269 139 EEASNLIYFL 148 (764)
Q Consensus 139 ~~A~~~~~~m 148 (764)
+++..++..+
T Consensus 86 ~~~~~l~~k~ 95 (140)
T smart00299 86 EEAVELYKKD 95 (140)
T ss_pred HHHHHHHHhh
Confidence 5555555444
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.95 E-value=3.1 Score=34.49 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhc
Q 004269 617 YNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681 (764)
Q Consensus 617 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 681 (764)
....++....+|+-+.-.+++..+.. +-.|++....-+..+|.+.|+..++.+++.+.-++|++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33344445555555555555555543 22444554445555555555555555555555555543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=1.9 Score=44.32 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=5.7
Q ss_pred HHCCCCCCHHH
Q 004269 641 HQNKVQPDPST 651 (764)
Q Consensus 641 ~~~~~~p~~~~ 651 (764)
...|+.|+...
T Consensus 404 ~~~gv~~~~~v 414 (453)
T PLN03098 404 ESEGVTPGEDV 414 (453)
T ss_pred HhcCCCCCCce
Confidence 34466665543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.58 E-value=4.9 Score=35.52 Aligned_cols=140 Identities=15% Similarity=0.123 Sum_probs=79.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004269 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643 (764)
Q Consensus 564 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 643 (764)
.++++.+.+.+++|+...|..+++.+.+.|++..-..++. .++-+|.......+-.+.. ....+.++--.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 4455666677888888888888888888887666544444 4666666655554433322 222333333333321
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhccccCchHhhhHHHHHhhhhccHHHHHHHHHHhhhcchhh
Q 004269 644 KVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENL 720 (764)
Q Consensus 644 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (764)
+. ..+..++..+...|++-+|+++.+.... . ........+......+|......+.+.+...+.++
T Consensus 88 -L~---~~~~~iievLL~~g~vl~ALr~ar~~~~--~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~~~ 153 (167)
T PF07035_consen 88 -LG---TAYEEIIEVLLSKGQVLEALRYARQYHK--V-----DSVPARKFLEAAANSNDDQLFYAVFRFFEERNLRL 153 (167)
T ss_pred -hh---hhHHHHHHHHHhCCCHHHHHHHHHHcCC--c-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhhHhh
Confidence 00 1344566788888888888888874321 1 11112334455555566666666666666544333
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.53 E-value=8.5 Score=38.12 Aligned_cols=131 Identities=11% Similarity=0.084 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh--hc----ChhHHHHHHHHHHhc----CCCCHhhHHHHHHHhhccCC-
Q 004269 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVW--QK----NLSAVHEIWEDYIKH----YSLSIFSLRKFVWSFTRLRD- 242 (764)
Q Consensus 174 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~- 242 (764)
+.+.+.+++.|.+.|+.-+..+|-+..-.... .. ....+..+|+.|.+. -.++...+..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566777888888888777777664433322 22 245777888888874 34555566666554 2332
Q ss_pred ---HHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCC---HHHHHHHH
Q 004269 243 ---LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN---SGLAEQLM 316 (764)
Q Consensus 243 ---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~ 316 (764)
.+.+..+|+.+.+.|...+... -+.+-+-++..... ..++.+++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~L------------------------------Q~LS~iLaL~~~~~~~~v~r~~~l~ 205 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDL------------------------------QFLSHILALSEGDDQEKVARVIELY 205 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHH------------------------------HHHHHHHHhccccchHHHHHHHHHH
Confidence 3556777777777777665521 22222222222211 34777888
Q ss_pred HHHHHCCCCCCcccHHHHHH
Q 004269 317 LQMQSLGLQPSSHTYDGFIR 336 (764)
Q Consensus 317 ~~m~~~g~~p~~~~~~~ll~ 336 (764)
+.+.+.|+++....|..+.-
T Consensus 206 ~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 206 NALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHcCCccccccccHHHH
Confidence 88888888877777765543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.40 E-value=9.2 Score=39.71 Aligned_cols=173 Identities=9% Similarity=0.036 Sum_probs=125.3
Q ss_pred HHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004269 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 57 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 136 (764)
.++.-+..+..+.-+..+..+|..-| -+...|..++++|..+ ..+.-..+|+++.+..+. |+..-..|..-| ..+
T Consensus 71 ~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y-Eki 145 (711)
T COG1747 71 TLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY-EKI 145 (711)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH-HHh
Confidence 44555667777888888889998876 7778899999999988 567788999999988652 333334444444 448
Q ss_pred CHHHHHHHHHHHhhhcCCCCC------hhhhHHHHHHHhccCCHHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHhhcCh
Q 004269 137 YLEEASNLIYFLGERYGIYPI------LPVYNSFLGACAKLHSMVHANLCLDLMDSR-MVGKNEVTYTELLKLAVWQKNL 209 (764)
Q Consensus 137 ~~~~A~~~~~~m~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~ 209 (764)
+-..+..+|..+..+. -|. ...|..|...- ..+.+..+.+...+... |...-.+.+..+-.-|....++
T Consensus 146 k~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 146 KKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred chhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 8888888888775432 221 11455554321 35677777777777643 6666777788888889999999
Q ss_pred hHHHHHHHHHHhcCCCCHhhHHHHHHHhh
Q 004269 210 SAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (764)
.+|.+++..+.+...-|..+.-.++.-+-
T Consensus 222 ~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 222 TEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred HHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 99999999999988888888777776553
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.22 E-value=4.5 Score=42.66 Aligned_cols=105 Identities=13% Similarity=0.039 Sum_probs=52.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
..+.++..+-+.|..+.|+++.+.-. .-.....+.|+++.|.++.+. .++...|..|-...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 35555555556666666655533221 112223345566555554322 22445566666666
Q ss_pred HhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
...|+++-|++.+.+.. -+..|+-.|.-.|+.+.-.++.+...+
T Consensus 358 L~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666666655432 244555566666666665555555444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.07 E-value=5.4 Score=34.45 Aligned_cols=85 Identities=9% Similarity=0.034 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004269 513 NTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY 592 (764)
Q Consensus 513 ~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 592 (764)
..+|..+...+.......+++.+...+ ..+...++.++..|++.+ .+.....+.. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 345555555566666666666666555 245556666666665542 2223333331 11222233355555555
Q ss_pred CCHHHHHHHHHHH
Q 004269 593 GDFDEALNLLDLV 605 (764)
Q Consensus 593 g~~~~A~~~~~~m 605 (764)
+.++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 6666666555554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.02 E-value=3.5 Score=39.68 Aligned_cols=51 Identities=10% Similarity=-0.010 Sum_probs=23.6
Q ss_pred HhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHH
Q 004269 63 LCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMME 114 (764)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 114 (764)
...|+..+|..+|....... +-+...-..+..++...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455555555555544433 1222333344445555555555555555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.96 E-value=22 Score=41.24 Aligned_cols=130 Identities=14% Similarity=0.018 Sum_probs=64.9
Q ss_pred HHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHh-hCCcchHHHHHHhccccCCCCCh--
Q 004269 11 QLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALC-RGERSRASHLLLNLGHAHHSLGA-- 87 (764)
Q Consensus 11 ~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~-~~~~~~a~~~~~~~~~~~~~~~~-- 87 (764)
...+..++..+++.+|+ .+..+.. -.++-...+.|+. +..-+.++.+ .++.+-.-.++..+...++.-+.
T Consensus 681 La~vr~~l~~~~y~~AF-~~~RkhR--idlnii~d~~~~~----Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~ 753 (1265)
T KOG1920|consen 681 LAKVRTLLDRLRYKEAF-EVMRKHR--IDLNIIFDYDPKR----FLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYS 753 (1265)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhc--cCccchhhcCHHH----HHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhcc
Confidence 44566788899999999 6655441 1123333444443 3333334554 34455555556666544321111
Q ss_pred hcHHHHHHHhhCC----CChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC--CHHHHHHHHHHHh
Q 004269 88 DDFFHILNYCARS----PDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG--YLEEASNLIYFLG 149 (764)
Q Consensus 88 ~~~~~ll~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~ 149 (764)
.++.+-.+.|... .......++......+. .|+ .-...+|.+|++.+ .++.|+....+..
T Consensus 754 ~~~~s~k~~~~~r~~~d~kv~~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 754 STSGSGKQVYMSRDPYDNKVNSVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred ccccccceeEEeccchhhHHHHHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 1111111122211 12223333333333332 455 45557888898887 6777777666654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.90 E-value=1.8 Score=45.49 Aligned_cols=152 Identities=10% Similarity=0.089 Sum_probs=80.9
Q ss_pred hcCcHHHHHHHHHhcCCCC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHH
Q 004269 489 AEGMIRELIQYFCDSKTPL--GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566 (764)
Q Consensus 489 ~~~~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 566 (764)
-.++++++.+.......-| +....+.++.-+-+.|..+.|+++-..-. .- .....+.|+++.|.++
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------~r----FeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD--------HR----FELALQLGNLDIALEI 340 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH--------HH----HHHHHHCT-HHHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH--------HH----hHHHHhcCCHHHHHHH
Confidence 3456666544443111111 23346667777777777777777643221 11 2334456777777666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004269 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQ 646 (764)
Q Consensus 567 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 646 (764)
.+.. .+...|..|.+...+.|+++-|++.|++.. -|..|+--|.-.|+.+.-.++.+.....|-
T Consensus 341 a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 341 AKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp CCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 5432 466677777777777788877777777642 344555556667777776666666655442
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004269 647 PDPSTCHFVFSGYVNCGFHNSAMEALQ 673 (764)
Q Consensus 647 p~~~~~~~ll~~~~~~g~~~~a~~~~~ 673 (764)
++.-..++.-.|+.++..+++.
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHH
Confidence 3333444555566666665554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.69 E-value=3.1 Score=36.37 Aligned_cols=87 Identities=10% Similarity=-0.006 Sum_probs=48.4
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhH
Q 004269 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
+-..|++++|..+|..+.--+.. +..-|..|..++-..+++++|+..|...-..+. -|...+-.+-.++...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 33567777777777766543322 223455566666666777777777766544332 233334444455556666666
Q ss_pred HHHHHHHHHh
Q 004269 212 VHEIWEDYIK 221 (764)
Q Consensus 212 a~~~~~~~~~ 221 (764)
|...|+....
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 6665555443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.60 E-value=5.9 Score=39.93 Aligned_cols=80 Identities=8% Similarity=-0.095 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004269 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373 (764)
Q Consensus 294 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 373 (764)
.+++.+.-++.+.+.+..|++.-+..+..+ ++|....----.++...|+++.|+..|+.+++..+. |..+-+.|+.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 488889999999999999999999988765 456667767778899999999999999999986443 333334444443
Q ss_pred Hh
Q 004269 374 SK 375 (764)
Q Consensus 374 ~~ 375 (764)
-+
T Consensus 336 ~k 337 (397)
T KOG0543|consen 336 QK 337 (397)
T ss_pred HH
Confidence 33
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.35 E-value=3.9 Score=38.97 Aligned_cols=106 Identities=14% Similarity=-0.002 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChh---hhHHHHHHHhccCCHHHHHHHHHHHhhcCCC-C-ChhhHH
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILP---VYNSFLGACAKLHSMVHANLCLDLMDSRMVG-K-NEVTYT 197 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~t~~ 197 (764)
..|+.-+. +.+.|++..|...|....+++ +-+.. .+-.|..++...|++++|..+|..+.+.-++ | -+.++-
T Consensus 143 ~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 143 KLYNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 36887775 457788999999998887543 22222 5666888899999999999999888775222 2 224555
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHH
Q 004269 198 ELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231 (764)
Q Consensus 198 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (764)
-|.....+.|+.+.|..+|+++.+.+|....+-.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 5556667788888888888888887766655433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.16 E-value=8 Score=34.24 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=43.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 358 (764)
.+..++..+...|++-+|+++.+.... .+......++.+..+.+|...-..+++-..+++
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 667788888889999998888877532 244445667788888888777777777666654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.7 Score=41.31 Aligned_cols=91 Identities=11% Similarity=0.035 Sum_probs=44.4
Q ss_pred HHHhhCCcchHHHHHHhccccCC--CCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcC--ccccHHHHHHHHHHHHccC
Q 004269 61 DALCRGERSRASHLLLNLGHAHH--SLGADDFFHILNYCARSPDPLFVMETWRMMEEKE--IGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g 136 (764)
.+.+.|++..|...|...++..+ ...+..+-.|.+++...|+++.|..+|..+.+.- .+--+...-.|.....+.|
T Consensus 150 ~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 150 DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence 34445555555555555554431 1223334455555555555555555555555431 1112234444455555555
Q ss_pred CHHHHHHHHHHHhhh
Q 004269 137 YLEEASNLIYFLGER 151 (764)
Q Consensus 137 ~~~~A~~~~~~m~~~ 151 (764)
+.++|...|+++.++
T Consensus 230 ~~d~A~atl~qv~k~ 244 (262)
T COG1729 230 NTDEACATLQQVIKR 244 (262)
T ss_pred CHHHHHHHHHHHHHH
Confidence 555555555555544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=1 Score=39.22 Aligned_cols=90 Identities=9% Similarity=-0.031 Sum_probs=49.7
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
...+-..|++++|..+|+-+.-.+ +.+..-+..|..+|-..++++.|...|......+. -|+..+-.....|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 444556677777777777666544 12222222333333344666777777666555442 3333344455566666777
Q ss_pred HHHHHHHHHHhh
Q 004269 139 EEASNLIYFLGE 150 (764)
Q Consensus 139 ~~A~~~~~~m~~ 150 (764)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 777776666643
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.67 E-value=8.6 Score=38.00 Aligned_cols=134 Identities=12% Similarity=0.003 Sum_probs=75.3
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCC
Q 004269 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN 308 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 308 (764)
...++..++...+.++.+++.|+...+..-..+++.-. ...|-.|-.-|.+..+
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE--------------------------lqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE--------------------------LQVCVSLGSLFAQLKD 177 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee--------------------------eehhhhHHHHHHHHHh
Confidence 34446666777778888888888877633222221110 1367778888888888
Q ss_pred HHHHHHHHHHHHH----CCCCCCcc-cHHH-----HHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHH----HHHHHHH
Q 004269 309 SGLAEQLMLQMQS----LGLQPSSH-TYDG-----FIRAIVSDRGLRNGMEVLKIMQQNNLK-PQDSTI----ATLSVEC 373 (764)
Q Consensus 309 ~~~a~~~~~~m~~----~g~~p~~~-~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~----~~li~~~ 373 (764)
+++|.-+..+..+ .++. |.. .|.. +--++...|.+.+|.+.-++..+..+. -|..++ ..+.+.|
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 8888766655433 2211 211 1222 223455677777777777666543211 133333 3455666
Q ss_pred HhcCCHHHHHHHHHHH
Q 004269 374 SKALELDLAEALLDQI 389 (764)
Q Consensus 374 ~~~g~~~~a~~~~~~~ 389 (764)
-..|+.+.|+.-++..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 6666666665555443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.58 E-value=4.5 Score=33.49 Aligned_cols=86 Identities=17% Similarity=0.163 Sum_probs=42.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcCC
Q 004269 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF---SGYVNCGF 664 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~g~ 664 (764)
++...|+++.|++.|.+.+.. .+..+..||.=..++.-+|+.++|+.=+++..+..-.-......+.+ ..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344556666666666655532 12345556666666666666666666666555431111222222222 14445566
Q ss_pred hHHHHHHHHH
Q 004269 665 HNSAMEALQV 674 (764)
Q Consensus 665 ~~~a~~~~~~ 674 (764)
-+.|..-|+.
T Consensus 131 dd~AR~DFe~ 140 (175)
T KOG4555|consen 131 DDAARADFEA 140 (175)
T ss_pred hHHHHHhHHH
Confidence 6666555553
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.52 E-value=3.8 Score=41.26 Aligned_cols=66 Identities=11% Similarity=0.006 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 195 TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
++..+.-++.+.+++..|.+.-...+...++|....-.-..++...|+++.|...|+++.+ +.|+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~N 324 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSN 324 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCc
Confidence 4566666788899999999999999888899999988889999999999999999999998 77765
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.11 E-value=15 Score=35.47 Aligned_cols=127 Identities=9% Similarity=-0.037 Sum_probs=86.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhc
Q 004269 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (764)
-.......|++.+|..+|+...+... -+...--.+..+|...|+.+.|..++..+...--.........-|..+.+..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 34466788999999999998876432 2344566788889999999999999998876532222233223344445555
Q ss_pred ChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhh
Q 004269 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA 257 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 257 (764)
+..+..++-..+- ..+.|...-..+...+...|+.+.|.+.+-.+.++.
T Consensus 218 ~~~~~~~l~~~~a-adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 218 ATPEIQDLQRRLA-ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred cCCCHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5544444433332 256688888889999999999999998887777643
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.87 E-value=14 Score=34.55 Aligned_cols=87 Identities=11% Similarity=0.043 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
..|.....+|-...++++|...+.+..+ +...|...|.+ ...++.|.-+.++|... .--..-|.-....
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~--~yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK--GYENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH--HHHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 4555556677777777777776665532 22223222222 12334444445554442 1112233444455
Q ss_pred HHhhcChhHHHHHHHHHH
Q 004269 203 AVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~ 220 (764)
|...|..+.|-..++..-
T Consensus 101 Y~E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAA 118 (308)
T ss_pred HHHhCCcchHHHHHHHHH
Confidence 666666665555555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.21 E-value=43 Score=39.08 Aligned_cols=152 Identities=11% Similarity=0.158 Sum_probs=97.9
Q ss_pred CcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hhCChhHHHHH
Q 004269 491 GMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS----IIRCFKSASAL 566 (764)
Q Consensus 491 ~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~----~~g~~~~a~~~ 566 (764)
++++.|+..+..++ ...|.-.++.--++|.+.+|+.++ +|+...+.-+..+|+ ....+++|--+
T Consensus 894 ~ry~~AL~hLs~~~----~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG----ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred HHHHHHHHHHHHcC----ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 45666666665553 224444555556677777777775 577766666655544 45677777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004269 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLL--YNTILKKACEKGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 567 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~ 644 (764)
|+..-+ ..--+.+|..+|++.+|+.+..++.. ..|... -..|+.-+...++.-+|-++..+...
T Consensus 962 Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-- 1027 (1265)
T KOG1920|consen 962 YERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-- 1027 (1265)
T ss_pred HHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc--
Confidence 765433 12356788888999999988887642 123222 25677888888888888888777652
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004269 645 VQPDPSTCHFVFSGYVNCGFHNSAMEALQV 674 (764)
Q Consensus 645 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 674 (764)
.|.. .+..|+++-.|++|+.+...
T Consensus 1028 -d~~~-----av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1028 -DPEE-----AVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred -CHHH-----HHHHHhhHhHHHHHHHHHHh
Confidence 2222 35567788888888876553
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.88 Score=29.81 Aligned_cols=36 Identities=6% Similarity=-0.116 Sum_probs=16.1
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHH
Q 004269 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 232 (764)
..+-.+|...|++++|.++++.+++..|.|...+..
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 334444444444444444444444444444444333
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.92 E-value=21 Score=35.16 Aligned_cols=163 Identities=15% Similarity=0.056 Sum_probs=96.7
Q ss_pred HHhhCCcchHHHHHHhccccCCCCChhc--------HHHHHHHhhCCCChhHHHHHHHHHHHc----C----cccc----
Q 004269 62 ALCRGERSRASHLLLNLGHAHHSLGADD--------FFHILNYCARSPDPLFVMETWRMMEEK----E----IGLN---- 121 (764)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~ll~~~~~~~~~~~a~~~~~~m~~~----~----~~~~---- 121 (764)
..++|+.+.|..++.+........++.. |+.-...+.+..+++.|...+++..+. + ..|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 3468899999999988775431223322 455455554433777776666655432 1 2232
Q ss_pred -HHHHHHHHHHHHccCCHH---HHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHH
Q 004269 122 -NKCYLLMMQALCKGGYLE---EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYT 197 (764)
Q Consensus 122 -~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 197 (764)
..+...++.+|...+..+ +|.++++.+....|-+ ..++-.-+..+.+.++.+.+.+++..|...- .-....+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~ 159 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHH
Confidence 246677788888777654 5666666664433332 3355556667777899999999999999862 21334455
Q ss_pred HHHHHHHh--hcChhHHHHHHHHHHh-cCCCCH
Q 004269 198 ELLKLAVW--QKNLSAVHEIWEDYIK-HYSLSI 227 (764)
Q Consensus 198 ~ll~~~~~--~~~~~~a~~~~~~~~~-~~~~~~ 227 (764)
.++..+.. ......+...+..+.. .+.|..
T Consensus 160 ~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 160 SILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 55554422 2334556666666654 344444
|
It is also involved in sporulation []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.80 E-value=1.3 Score=28.99 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004269 582 YTALIKILLDYGDFDEALNLLDLVSL 607 (764)
Q Consensus 582 ~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (764)
|..+...|.+.|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444455555555555555555543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.79 E-value=4.1 Score=39.40 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 004269 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ-----NKVQPDPSTCHF 654 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 654 (764)
.++..++..+..+|+.+.+.+.++++.... +-|...|..++.+|.+.|+...|+..|+++.. .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 346667778888888888888888887543 34777888888888888888888888887764 477777766544
Q ss_pred HHH
Q 004269 655 VFS 657 (764)
Q Consensus 655 ll~ 657 (764)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.56 E-value=18 Score=33.93 Aligned_cols=197 Identities=16% Similarity=0.084 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHhcC----CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004269 477 HISMKNLLKALGAEGMIRELIQYFCDSK----TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMID 552 (764)
Q Consensus 477 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 552 (764)
...+......+...+.+..+...+.... .......+......+...+....+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455566777778888888877776642 233445666677777778888999999998887543331 22222222
Q ss_pred -HHHhhCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC
Q 004269 553 -CCSIIRCFKSASALVSMMVRDGF--YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH-DVLLYNTILKKACEKG 628 (764)
Q Consensus 553 -~~~~~g~~~~a~~~~~~~~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g 628 (764)
.+...|+++.+...+........ ......+......+...++.++|...+....... .. ....+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcc
Confidence 67888999999999998865321 1233444444555677889999999999988542 22 3677888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 629 RIDVIEFIIEQMHQNKVQPD-PSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 629 ~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
+.+.|...+..... ..|+ ...+..+...+...|.++++...++....
T Consensus 217 ~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999998885 3444 33444444455577778888887775543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.20 E-value=9.8 Score=37.21 Aligned_cols=119 Identities=8% Similarity=-0.107 Sum_probs=90.0
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChh--hHHHHHH--HHHhhc
Q 004269 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV--TYTELLK--LAVWQK 207 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~--~~~~~~ 207 (764)
+-..|+..+|-..++++.+. .|.|...++-.=.+|.-+|+.......++.+... ..||.. +|..=+- ++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 34567888888888888754 4667777887888888899998888888887654 234443 3322222 334678
Q ss_pred ChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHH
Q 004269 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHM 253 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 253 (764)
-+++|++.-++..+-.+.|..+-.++.+++--.|++.++.++..+-
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 8999999999888888889999999999999999999998886654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=89.19 E-value=18 Score=37.60 Aligned_cols=131 Identities=9% Similarity=-0.038 Sum_probs=74.6
Q ss_pred hhh--HHHHHHHhcc-----CCHHHHHHHHHHHhhc-CCCCChh-hHHHHHHHHHh---------hcChhHHHHHHHHHH
Q 004269 159 PVY--NSFLGACAKL-----HSMVHANLCLDLMDSR-MVGKNEV-TYTELLKLAVW---------QKNLSAVHEIWEDYI 220 (764)
Q Consensus 159 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~~-g~~p~~~-t~~~ll~~~~~---------~~~~~~a~~~~~~~~ 220 (764)
..| ...+++.... .+.+.|+.+|.+.... .+.|+-. .|..+-.++.. ..+..+|.++-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 355 5666665542 3456788888887722 3455443 33222222211 122335555555555
Q ss_pred hcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHH
Q 004269 221 KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300 (764)
Q Consensus 221 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 300 (764)
+..+.|+.+...+..+..-.++++.|..+|++... +.|+.. .+|....
T Consensus 332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A------------------------------~~~~~~~ 379 (458)
T PRK11906 332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIA------------------------------SLYYYRA 379 (458)
T ss_pred hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccH------------------------------HHHHHHH
Confidence 56677777777777766666777777777777766 555541 3444444
Q ss_pred HHHHccCCHHHHHHHHHHHHH
Q 004269 301 HACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 301 ~~~~~~~~~~~a~~~~~~m~~ 321 (764)
..+.-.|+.++|.+.+++..+
T Consensus 380 ~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 380 LVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHcCCHHHHHHHHHHHhc
Confidence 444556777777777776544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=88.85 E-value=17 Score=36.14 Aligned_cols=129 Identities=6% Similarity=-0.008 Sum_probs=67.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCCHHH
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQSL-GLQPS---SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN-----LKPQDST 365 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 365 (764)
+|-.+.+++-+.-++.+++.+-..-... |..|. .....++-.+....+.++.+++.|+...+.. ......+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4555555555555555555544433321 22221 1223345566667777788888777766532 2223346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC------CCcc-H-----HHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 366 IATLSVECSKALELDLAEALLDQISRCT------NPKP-F-----SAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 366 ~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~-~-----~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
+..|-..|.+..|.++|.-+.....+.. |... | -.|.-++-..|+.-.|.+..++..+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 6777777777777777765544433211 1111 1 1233445556666666666655443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=88.57 E-value=19 Score=37.50 Aligned_cols=123 Identities=9% Similarity=-0.033 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHhhhcCCCCChh-hhHHHHHHHh---------ccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhh
Q 004269 137 YLEEASNLIYFLGERYGIYPILP-VYNSFLGACA---------KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 137 ~~~~A~~~~~~m~~~~~~~~~~~-~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (764)
..+.|..+|.+......+.|+-. .|..+..++. ...+..+|.++-+...+.+.. |..+...+-.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 35677777887764344455433 2222222211 123455666777776665433 677777776666777
Q ss_pred cChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 207 KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
++++.+...|++...-.|....+|........-+|+.++|.+.+++..+ ..|..
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~ 405 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRR 405 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchh
Confidence 8899999999998887777778888877788888999999999999776 55543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.51 E-value=6.8 Score=35.39 Aligned_cols=94 Identities=16% Similarity=0.065 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHH
Q 004269 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDV--LLYNTILKKACEKGRIDVIEFIIEQMHQN---KVQPDPSTCHF 654 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ 654 (764)
..+..+.+.|++.|+.++|.+.+.++.+....+.. ..+-.+|..+...+++..+...+.+.... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45677888888889999999998888775444433 35677788888888888888887776642 21122111111
Q ss_pred HHH--HHHhcCChHHHHHHHH
Q 004269 655 VFS--GYVNCGFHNSAMEALQ 673 (764)
Q Consensus 655 ll~--~~~~~g~~~~a~~~~~ 673 (764)
... .+...|++.+|-+.|-
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl 137 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFL 137 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHH
Confidence 122 3345677777776664
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.33 E-value=3.6 Score=32.02 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=27.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004269 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 598 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
+.+-++.+....+-|++.+..+.+++|.+.+|+..|.++++-.+.
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444455666666666666666666666666666665553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.96 E-value=18 Score=31.85 Aligned_cols=135 Identities=9% Similarity=0.004 Sum_probs=71.5
Q ss_pred CChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChh-hhH
Q 004269 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNK-CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILP-VYN 162 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ 162 (764)
.+...|..-|+.. +.+..++|+..|..+.+.|...-+. ..-......+..|+-..|...|+++..... .|-.. -..
T Consensus 57 ~sgd~flaAL~lA-~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~A 134 (221)
T COG4649 57 KSGDAFLAALKLA-QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLA 134 (221)
T ss_pred cchHHHHHHHHHH-HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHH
Confidence 3445566655543 4455667777777777665433222 222334455666777777777777653221 12211 011
Q ss_pred HHH--HHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh
Q 004269 163 SFL--GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 163 ~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
.|= -.+..+|.++....-.+-+...+-..-...-..|--+-.+.|++..|.+.|..+..
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 111 12345677766666666555444333333444454455567777777777777665
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=87.34 E-value=9.9 Score=30.03 Aligned_cols=58 Identities=7% Similarity=0.057 Sum_probs=30.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004269 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656 (764)
Q Consensus 598 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 656 (764)
..+-++.+....+-|++.+..+.+++|.+.+++..|.++++-.+.+ +.+....|..++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~l 86 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHH
Confidence 3444455555566677777777777777777777777777666542 222222554444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.10 E-value=5.3 Score=38.71 Aligned_cols=76 Identities=12% Similarity=-0.067 Sum_probs=48.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhh-----cCCCCChhhHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS-----RMVGKNEVTYTE 198 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 198 (764)
++..++..+...|+++.+...++++...+ +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45556666667777777777777765543 33556677777777777777777777766654 356665555444
Q ss_pred HHH
Q 004269 199 LLK 201 (764)
Q Consensus 199 ll~ 201 (764)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=87.06 E-value=34 Score=35.87 Aligned_cols=61 Identities=13% Similarity=0.031 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 363 DSTIATLSVECSKALELDLAEALLDQISRCT----NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
..+-..+..++-+.|+.++|.+.|.++.+.. .......|+.++...+.+.++..++.+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3334456666777788888888888876532 223556778888888888888888887654
|
The molecular function of this protein is uncertain. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.56 E-value=26 Score=38.59 Aligned_cols=117 Identities=12% Similarity=0.005 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHH-HhccCCHHHHHHHHHHHhh-------cCCCCChhhHHHHHHHHHhhc--
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGA-CAKLHSMVHANLCLDLMDS-------RMVGKNEVTYTELLKLAVWQK-- 207 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~~-- 207 (764)
...|.++++...+...+.+-...-.....+ +....|.+.|+..|+.+.. .| ......-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 456777777765543222222222223333 5566788888888888766 33 2223444444444422
Q ss_pred ---ChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhc-cCCHHHHHHHHHHHHHhh
Q 004269 208 ---NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR-LRDLKSAYETLQHMVALA 257 (764)
Q Consensus 208 ---~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~ 257 (764)
+.+.|..++....+...|+....-..+..... ..+...|.++|....+.|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 44556666665555444444444333333332 234556666666665544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.34 E-value=7.3 Score=37.68 Aligned_cols=103 Identities=8% Similarity=0.029 Sum_probs=55.5
Q ss_pred CccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcC--CCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChh
Q 004269 117 EIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYG--IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV 194 (764)
Q Consensus 117 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 194 (764)
|.+.+..+...++..-.....++.++..+-.++.... ..|+. +-.+.++.+. .-+.++++.++..=.+.|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 3344444445555544455566666666655543110 01111 1122333333 234556666666666667777777
Q ss_pred hHHHHHHHHHhhcChhHHHHHHHHHHh
Q 004269 195 TYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
+++.+|+.+.+.+++..|.++...++.
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777766666655554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.02 E-value=0.78 Score=28.02 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=25.8
Q ss_pred HHHHHhcCCCCHhhHHHHHHHhhccCCHHHHH
Q 004269 216 WEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 216 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
|++.++..|.+..+|+.+..+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555667888889999999999999998885
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.91 E-value=12 Score=31.15 Aligned_cols=53 Identities=9% Similarity=0.030 Sum_probs=37.9
Q ss_pred HHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.+..|+++.|.+.|.+.+.-.|....+||.-..++--.|+.++|+.-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 45567777777777776666667777777777777777777777777777666
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=85.88 E-value=2 Score=26.57 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=9.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 004269 618 NTILKKACEKGRIDVIEFIIEQ 639 (764)
Q Consensus 618 ~~li~~~~~~g~~~~a~~~~~~ 639 (764)
..|...|.+.|++++|++++++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.71 E-value=25 Score=31.08 Aligned_cols=140 Identities=15% Similarity=0.170 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHH-HHHHH--
Q 004269 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAAT-YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTM-TYTAL-- 585 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~-~~~~l-- 585 (764)
..|...+. +++.+..++|+.-|.++.+.|..--.+. -..+-......|+...|...|+++-+....|-+. -..-|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444443 3566788899999999888775422221 1112233556788888889998888765445433 11111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004269 586 IKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
...+...|.++....-.+.+...+-+.-...-..|--+..+.|++..|.+.|..+......|...
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprni 203 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNI 203 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHH
Confidence 22345678888887777776544433344455667777778888888888888887654555443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.51 E-value=7.3 Score=35.21 Aligned_cols=64 Identities=13% Similarity=0.058 Sum_probs=39.3
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCC
Q 004269 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN 308 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 308 (764)
.+..+...|++.|+.+.|.+.|.++.+....+... ...+-.+|+.....++
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~-----------------------------id~~l~~irv~i~~~d 88 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK-----------------------------IDMCLNVIRVAIFFGD 88 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH-----------------------------HHHHHHHHHHHHHhCC
Confidence 45556667777777777777777766643333221 1355566677777777
Q ss_pred HHHHHHHHHHHHH
Q 004269 309 SGLAEQLMLQMQS 321 (764)
Q Consensus 309 ~~~a~~~~~~m~~ 321 (764)
+..+.....+...
T Consensus 89 ~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 89 WSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666666543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=85.37 E-value=68 Score=35.88 Aligned_cols=86 Identities=21% Similarity=0.237 Sum_probs=39.7
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh---c
Q 004269 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDG-FYPQTMTYTALIKILLD---Y 592 (764)
Q Consensus 517 ~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~~~---~ 592 (764)
..+.-.|++|.|++.+-+ ..+...|.+.+.+.+..|.-.+-.+... ..+.... -.|...-+..||..|++ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445567888888888776 2234556666666666544332222211 2222110 11222557778888876 3
Q ss_pred CCHHHHHHHHHHHHH
Q 004269 593 GDFDEALNLLDLVSL 607 (764)
Q Consensus 593 g~~~~A~~~~~~m~~ 607 (764)
.+..+|.+++--+..
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 567778887776654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.13 E-value=5.4 Score=38.54 Aligned_cols=108 Identities=10% Similarity=0.151 Sum_probs=74.4
Q ss_pred cCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHH
Q 004269 222 HYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301 (764)
Q Consensus 222 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 301 (764)
|.+.+..+...++..-....+++.+...+-++.. .|+.-.- ++ ++-.+.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRh---s~~a~~~-----------------------~~---~~~~~~ir 109 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRH---SPNAWYL-----------------------RN---WTIHTWIR 109 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhc---Ccchhhh-----------------------cc---ccHHHHHH
Confidence 4555566666666666667778888777766654 2221000 00 13333344
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 004269 302 ACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNL 359 (764)
Q Consensus 302 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 359 (764)
.+. .-++++++.++..=.+.|+-||.++++.+|..+.+.+++.+|.++..+|+....
T Consensus 110 lll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 110 LLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred HHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 433 345778999998888999999999999999999999999999998888876543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=85.04 E-value=1.7 Score=26.85 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=18.8
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 229 SLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
++..|..+|.+.|++++|..+|++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677777788888888888877554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=84.67 E-value=27 Score=30.61 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=8.1
Q ss_pred HHccCCHHHHHHHHHHH
Q 004269 132 LCKGGYLEEASNLIYFL 148 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~m 148 (764)
+...|+|.+|+.+|+++
T Consensus 54 ~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 54 HIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 33444555555555544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.62 E-value=33 Score=31.58 Aligned_cols=160 Identities=13% Similarity=0.006 Sum_probs=91.7
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
+..||.+.-.+...|+++.|.+.|+...+.+..-+-...|.-|. +--.|+++-|.+-|...-+.+.-.|=...|--++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 45688887778888999999999998888763323233333332 33568888888877777665544343333433332
Q ss_pred HHhccCCHHHHHHHH-HHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCC-------HhhHHHHHHHhh
Q 004269 167 ACAKLHSMVHANLCL-DLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS-------IFSLRKFVWSFT 238 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~-~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~li~~~~ 238 (764)
+.-+..+|..-+ ++... .|..-|...|-.+. .|.+. .+.+++.+......+ ..+|--|..-+.
T Consensus 178 ---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence 223455554433 33322 23333333332221 11111 123333333322211 346778888899
Q ss_pred ccCCHHHHHHHHHHHHHh
Q 004269 239 RLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~ 256 (764)
..|+.++|..+|+.....
T Consensus 249 ~~G~~~~A~~LfKLaian 266 (297)
T COG4785 249 SLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccccHHHHHHHHHHHHHH
Confidence 999999999999988763
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=84.51 E-value=29 Score=33.71 Aligned_cols=125 Identities=13% Similarity=0.185 Sum_probs=60.9
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHH-cCccccHHHHHHHHHHHHc-cC-CHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 90 FFHILNYCARSPDPLFVMETWRMMEE-KEIGLNNKCYLLMMQALCK-GG-YLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
|..++. ++..+.+|+.+|+.... ..+--|..+-..+++.... .+ ....--++.+-+....+-.++..+--.+|.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555543 22334445555542221 1233455555555555543 11 122222222333222333455555566666
Q ss_pred HHhccCCHHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHhhcChhHHHHHHH
Q 004269 167 ACAKLHSMVHANLCLDLMDSR-MVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
.+++.+++.+-.++.+..... ++..|...|...|+.....||..-...+.+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 666666666666666555443 455566666666666666666655555444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.88 E-value=38 Score=31.69 Aligned_cols=96 Identities=14% Similarity=-0.006 Sum_probs=45.1
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHH-H
Q 004269 159 PVYNSFLGACAKLHSMVHANLCLDLMDSR-MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVW-S 236 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~-~ 236 (764)
..+......+...+++..+...+...... ........+......+...+++..+...+.......+.+......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34455555555555555555555554431 122233334444444444455555555555544432222222222222 4
Q ss_pred hhccCCHHHHHHHHHHHH
Q 004269 237 FTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~ 254 (764)
+...|+++.|...+....
T Consensus 140 ~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 140 LYELGDYEEALELYEKAL 157 (291)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 556666666666666653
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.73 E-value=8.9 Score=29.94 Aligned_cols=48 Identities=8% Similarity=-0.070 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh
Q 004269 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 174 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
.-++.+-++.+....+.|++....+.+++|.+.+|+..|.++++.+..
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334455555555566677777777777777777777777777776553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=83.55 E-value=1.4 Score=26.92 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=14.4
Q ss_pred cccHHHHHHHHHHHHccCCHHHHH
Q 004269 119 GLNNKCYLLMMQALCKGGYLEEAS 142 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~A~ 142 (764)
|-+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 345556666666666666666654
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=83.25 E-value=8.2 Score=30.47 Aligned_cols=45 Identities=9% Similarity=-0.034 Sum_probs=22.4
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh
Q 004269 177 ANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 177 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
..+-++.+-...+.|++....+.|++|.+.+|+..|.++++.+..
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444445555666666666666666666666666555543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.46 E-value=51 Score=30.84 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=16.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCC
Q 004269 300 IHACGRTQNSGLAEQLMLQMQSLGL 324 (764)
Q Consensus 300 i~~~~~~~~~~~a~~~~~~m~~~g~ 324 (764)
...-+..+++.+|+++|++.....+
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344556778888888888766543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 70.6 bits (171), Expect = 1e-12
Identities = 19/172 (11%), Positives = 45/172 (26%), Gaps = 7/172 (4%)
Query: 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYF------CDSKTPLGTPTYNTVL 516
A ++ + + K + + L YN V+
Sbjct: 113 APSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVM 172
Query: 517 HSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS-IIRCFKSASALVSMMVRDGF 575
+ + +K G+ P+ +Y + C + + + M ++G
Sbjct: 173 LGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGL 232
Query: 576 YPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEK 627
Q + L+ + SL + + +L+ K
Sbjct: 233 KLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.4 bits (142), Expect = 3e-09
Identities = 25/192 (13%), Positives = 58/192 (30%), Gaps = 5/192 (2%)
Query: 510 PTYNTVLHSLVEAQESHRAMEI---FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566
+ + A + + YN ++ + FK +
Sbjct: 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYV 187
Query: 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALN-LLDLVSLEGIPHDVLLYNTILKKAC 625
+ M+ G P ++Y A ++ + + L+ +S EG+ L +L +
Sbjct: 188 LFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247
Query: 626 EKGRIDVIEFIIEQMHQNKVQPDP-STCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684
+ + + P P +T + Y G + L + +++ L E+
Sbjct: 248 RATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ 307
Query: 685 STLEEKRSDFED 696
+E
Sbjct: 308 LHMELASRVCVV 319
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.4 bits (129), Expect = 1e-07
Identities = 16/133 (12%), Positives = 38/133 (28%), Gaps = 2/133 (1%)
Query: 71 ASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130
A L A S + +L + ++ + L +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 131 ALCKGGYLEEASNLIYFLGERY--GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188
L A +L+ + L +YN+ + A+ + L ++
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 189 VGKNEVTYTELLK 201
+ + ++Y L+
Sbjct: 196 LTPDLLSYAAALQ 208
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 1e-06
Identities = 47/369 (12%), Positives = 108/369 (29%), Gaps = 98/369 (26%)
Query: 3 RPLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTT--TMGLNEESISKATQMQIV 60
+ LL TRF+ + D F + H + S TLT L + K +
Sbjct: 267 KILLTTRFKQVTD-FLSAATTTHISLD-----HHSMTLTPDEVKSL----LLKYLDCRPQ 316
Query: 61 D-----------------ALCRGERSRASHLLLNLGHAHHS--------LGADDFFHILN 95
D R + + + L ++ + +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 96 YCARSPD----PLFVMET-WRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE 150
+ P P ++ W + + ++ ++++ L K +E+
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDV-------MVVVNKLHKYSLVEKQPK-----ES 424
Query: 151 RYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS 210
I I Y +++ H +V Y +L
Sbjct: 425 TISIPSI---YLELKVKLENEYAL-HR---------SIVDH----YNIPKTFDSD--DLI 465
Query: 211 AVHEIWEDYIKHY------------SLSIFSLRKFV---WSFTRLRDLKSAYETLQHMVA 255
+ + Y + +++F F+ + ++R +A+ ++
Sbjct: 466 PPY--LDQYFYSHIGHHLKNIEHPERMTLFR-MVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 256 LAMMGKLYINRTSEGRLRSSRL--DIPIPLNALPVM--KVLRWSFSDVIHACGRTQNSGL 311
K Y + + RL I L+ LP + ++ ++D++ ++ +
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAI---LDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Query: 312 AEQLMLQMQ 320
E+ Q+Q
Sbjct: 580 FEEAHKQVQ 588
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 764 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.85 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.73 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.72 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.72 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.72 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.71 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.69 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.68 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.68 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.67 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.66 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.66 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.65 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.63 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.58 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.49 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.47 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.47 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.46 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.45 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.45 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.44 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.42 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.41 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.41 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.41 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.41 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.39 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.39 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.38 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.37 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.37 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.36 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.35 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.34 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.33 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.32 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.3 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.29 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.29 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.28 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.27 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.26 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.25 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.24 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.22 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.21 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.21 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.19 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.18 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.16 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.15 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.14 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.07 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.06 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.05 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.03 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.02 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.01 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.01 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.98 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.94 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.93 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.91 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.89 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.86 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.83 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.78 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.76 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.75 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.75 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.74 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.72 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.71 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.65 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.65 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.64 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.63 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.6 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.6 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.6 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.59 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.58 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.57 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.57 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.56 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.55 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.53 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.53 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.53 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.52 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.5 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.49 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.48 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.44 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.42 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.37 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.34 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.33 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.29 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.24 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.22 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.21 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.2 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.2 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.2 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.2 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.19 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.18 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.17 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.17 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.17 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.16 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.14 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.14 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.13 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.13 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.12 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.12 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.12 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.11 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.09 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.08 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.07 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.06 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.04 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.03 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.0 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.97 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.94 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.94 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.92 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.91 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.91 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.89 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.87 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.87 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.86 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.85 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.84 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.84 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.83 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.8 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.78 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.76 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.75 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.75 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.74 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.74 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.73 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.71 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.71 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.71 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.69 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.68 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.59 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.58 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.53 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.48 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.45 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.44 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.41 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.32 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.29 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.28 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.28 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.25 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.24 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.22 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.21 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.2 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.19 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.15 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.14 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.12 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.11 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.1 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.1 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.9 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.89 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.87 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.82 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.73 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.62 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.61 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.54 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.48 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.47 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.13 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.06 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.81 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.78 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.77 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.25 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.05 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 94.95 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 94.85 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 94.66 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.49 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.47 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.43 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.29 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.28 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.2 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.1 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 94.04 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.98 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.55 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.31 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.18 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.15 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.43 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.86 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.82 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.36 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.9 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 90.28 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.43 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.06 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.45 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.75 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.82 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 85.07 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.7 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 82.96 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 82.93 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.2 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=343.98 Aligned_cols=501 Identities=12% Similarity=-0.026 Sum_probs=297.1
Q ss_pred hhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHH
Q 004269 64 CRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASN 143 (764)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 143 (764)
..|....+...+..+. .++...|+.++..|.+.|+++.|..+|++|... .|+..++..++.+|.+.|++++|..
T Consensus 65 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3444444444444332 245667778888888888888888888877743 4666777778888888888888888
Q ss_pred HHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcC
Q 004269 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY 223 (764)
Q Consensus 144 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 223 (764)
+|+.+.. .+++..+++.++.+|.+.|++++|.++|+++... .. ...++...++ ...+.
T Consensus 139 ~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~----~~~~~~~~~~----------~~~~~ 196 (597)
T 2xpi_A 139 LLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPF-----RK----DEKNANKLLM----------QDGGI 196 (597)
T ss_dssp HHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT-----C--------------C----------CCSSC
T ss_pred HHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc-----cc----cccccccccc----------ccccc
Confidence 8877643 2566777888888888888888888887742211 00 0000000000 00112
Q ss_pred CCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHH
Q 004269 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303 (764)
Q Consensus 224 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 303 (764)
+.+..+|+.++.+|.+.|++++|.++|+++.+ ..|+.. ..|..+...+
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~------------------------------~~~~~l~~~~ 244 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALM--VDAKCY------------------------------EAFDQLVSNH 244 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH------------------------------HHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCchhh------------------------------HHHHHHHHhh
Confidence 33444555555555555555555555555554 223220 2333333333
Q ss_pred HccCCHHHHHH--H-HHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004269 304 GRTQNSGLAEQ--L-MLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380 (764)
Q Consensus 304 ~~~~~~~~a~~--~-~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 380 (764)
...+..+.+.. + +..+...+..++..+|+.++..|.+.|++++|.++|+.+.+. .++..++..++.+|.+.|+++
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 322 (597)
T 2xpi_A 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFI 322 (597)
T ss_dssp CSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHH
T ss_pred cccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHH
Confidence 33222221111 1 333333333333344444455555555555555555555443 245555555555555555555
Q ss_pred HHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhH
Q 004269 381 LAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458 (764)
Q Consensus 381 ~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 458 (764)
+|..+|+++.... +..+|+.++.+|.+.|++++|..+|+++.+. .|
T Consensus 323 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~------------------------------- 370 (597)
T 2xpi_A 323 DVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HP------------------------------- 370 (597)
T ss_dssp HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CT-------------------------------
T ss_pred HHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-Cc-------------------------------
Confidence 5555555554322 5556666666666666666666666666541 11
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcC--CCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 004269 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSK--TPLGTPTYNTVLHSLVEAQESHRAMEIFKQMK 536 (764)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~ 536 (764)
.+..+++.++..|.+.|++++|.++|+++. .+.+..+|+.++.+|.+.|++++|+++|++|.
T Consensus 371 ----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 434 (597)
T 2xpi_A 371 ----------------EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434 (597)
T ss_dssp ----------------TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ----------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 122333445555666666666666665531 23356678888888888888888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC
Q 004269 537 TCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLE----GIPH 612 (764)
Q Consensus 537 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p 612 (764)
+.+ +.+..++..+..+|.+.|++++|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|
T Consensus 435 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p 512 (597)
T 2xpi_A 435 RLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512 (597)
T ss_dssp HTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch
Confidence 764 3467778888888888888888888888877653 336777888888888888888888888887664 5567
Q ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 613 D--VLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 613 ~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++|.++++++..
T Consensus 513 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 513 KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 6 6788888888888888888888888877643 23667777777788888888888888877654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=338.88 Aligned_cols=497 Identities=11% Similarity=-0.053 Sum_probs=353.7
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 004269 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL 199 (764)
Q Consensus 120 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 199 (764)
++...|+.++..|.+.|++++|..+|++|... .|+..++..++.+|.+.|++++|..+|+.+.. ..++..+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHH
Confidence 34555566666666666666666666655422 34555555566666666666666666655543 23455555555
Q ss_pred HHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCC
Q 004269 200 LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDI 279 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (764)
+.+|.+.|++++|.++|+++... +.. ...+.+.++. ..+..++
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~---~~~-----~~~~~~~~~~-----------~~~~~~~------------------ 199 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPF---RKD-----EKNANKLLMQ-----------DGGIKLE------------------ 199 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTT---C---------------CC-----------CSSCCHH------------------
T ss_pred HHHHHHHhhHHHHHHHHhccCCc---ccc-----cccccccccc-----------ccccchh------------------
Confidence 55555555555555555431110 000 0000000000 0011111
Q ss_pred CccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChh--HHHHH-HHHHH
Q 004269 280 PIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSDRGLR--NGMEV-LKIMQ 355 (764)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~--~a~~~-~~~~~ 355 (764)
..+|+.++.+|.+.|++++|+++|++|.+.+ |+. ..+..+...+...+... .+..+ +..+.
T Consensus 200 -------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 264 (597)
T 2xpi_A 200 -------------ASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYS 264 (597)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHH
T ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccc
Confidence 2699999999999999999999999999864 554 44554544333222222 12222 56666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHH
Q 004269 356 QNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYE 433 (764)
Q Consensus 356 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~ 433 (764)
..+..+...+|+.++..|.+.|++++|.++|+++...+ +..+|+.++.+|.+.|++++|+.+|+++.+ + |
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~------ 336 (597)
T 2xpi_A 265 KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--P------ 336 (597)
T ss_dssp GGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------
T ss_pred cchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--c------
Confidence 66666667778888999999999999999999998743 889999999999999999999999999986 3 2
Q ss_pred HHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc--CCCCChhh
Q 004269 434 LLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS--KTPLGTPT 511 (764)
Q Consensus 434 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~ 511 (764)
.+..+++.++..|.+.|++++|..+|+++ ..+.+..+
T Consensus 337 -----------------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 375 (597)
T 2xpi_A 337 -----------------------------------------YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375 (597)
T ss_dssp -----------------------------------------TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred -----------------------------------------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHH
Confidence 12334566777888899999999999875 23456789
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004269 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591 (764)
Q Consensus 512 ~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 591 (764)
|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 9999999999999999999999998753 3467899999999999999999999999999874 3578899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCh
Q 004269 592 YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN----KVQPD--PSTCHFVFSGYVNCGFH 665 (764)
Q Consensus 592 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~g~~ 665 (764)
.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++
T Consensus 454 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 454 LGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 999999999999998753 457899999999999999999999999999875 66888 67999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCchHhhhHHHHHhhhhccHHHHHHHH-HHhhhcchhhHHHHhhhhh
Q 004269 666 NSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRIL-QFCEDSNENLAFTAALLQL 729 (764)
Q Consensus 666 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~ 729 (764)
++|.++++++...+ |. ...........+...++.+.+...+ +.+..+++.......|.++
T Consensus 533 ~~A~~~~~~~~~~~--p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 533 DAAIDALNQGLLLS--TN--DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHHHHS--SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC--CC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 99999999886643 22 1222233344445556666555544 4455666666655555544
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=267.92 Aligned_cols=195 Identities=17% Similarity=0.180 Sum_probs=176.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCc
Q 004269 397 PFSAFLAACDTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQH 475 (764)
Q Consensus 397 ~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (764)
.++.+|.+|++.|++++|+++|++|.+ |++||.+||+++|.+|++.+...+.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------------------------- 80 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------------------------- 80 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS---------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh---------------------------
Confidence 477889999999999999999999999 9999999999999999876543111
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004269 476 SHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS 555 (764)
Q Consensus 476 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 555 (764)
.+.+..++|.++|++|...|+.||..||+++|.+|+
T Consensus 81 --------------------------------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~ 116 (501)
T 4g26_A 81 --------------------------------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV 116 (501)
T ss_dssp --------------------------------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred --------------------------------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 123446789999999999999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 004269 556 IIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEF 635 (764)
Q Consensus 556 ~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 635 (764)
+.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+
T Consensus 117 ~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ 196 (501)
T 4g26_A 117 AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYK 196 (501)
T ss_dssp HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004269 636 IIEQMHQNKVQPDPSTCHFVFSGYVNC 662 (764)
Q Consensus 636 ~~~~m~~~~~~p~~~~~~~ll~~~~~~ 662 (764)
++++|.+.|..|+..||+.++..|+..
T Consensus 197 ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 197 TLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999888764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-28 Score=257.01 Aligned_cols=182 Identities=16% Similarity=0.243 Sum_probs=173.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCC---------hhHHHHHHHHHHHCCCCCCH
Q 004269 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRC---------FKSASALVSMMVRDGFYPQT 579 (764)
Q Consensus 509 ~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~a~~~~~~~~~~g~~p~~ 579 (764)
...++.+|++|++.|++++|+++|++|.+.|++||..||++||.+|++.+. +++|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346888999999999999999999999999999999999999999987654 68899999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004269 580 MTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGY 659 (764)
Q Consensus 580 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 659 (764)
.+|++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHhhhccccCchHhh
Q 004269 660 VNCGFHNSAMEALQVLSMRMLCEEVSTLEEK 690 (764)
Q Consensus 660 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 690 (764)
++.|++++|.+++++|+..+..|...++..+
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l 216 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMI 216 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 9999999999999999999998887666433
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-23 Score=215.17 Aligned_cols=376 Identities=10% Similarity=0.025 Sum_probs=216.4
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHH
Q 004269 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
.+.+.|++++|+..++.+.+..+. +...+..+...+...|++++|...++...+..+.+..+|..+..+|.+.|++++|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 344455555555555554443211 2223333334444555555555555555555555555555555555566666666
Q ss_pred HHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 004269 247 YETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQP 326 (764)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 326 (764)
...|+++.+ ..|+. ..+|..+..++.+.|++++|.+.|+++.+. .|
T Consensus 87 ~~~~~~al~--~~p~~------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p 132 (388)
T 1w3b_A 87 IEHYRHALR--LKPDF------------------------------IDGYINLAAALVAAGDMEGAVQAYVSALQY--NP 132 (388)
T ss_dssp HHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CT
T ss_pred HHHHHHHHH--cCcch------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 666665554 33333 134555555555666666666666555543 23
Q ss_pred Ccc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHH
Q 004269 327 SSH-TYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLA 403 (764)
Q Consensus 327 ~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~ 403 (764)
+.. .+..+...+...|++++|..+|+.+.+.... +..++..+...|.+.|++++|...|+++.... +...|..+..
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 211 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 332 2333444444555555555555555543322 23334444444444444444444444433221 2223333444
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHH
Q 004269 404 ACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNL 483 (764)
Q Consensus 404 ~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 483 (764)
.+...|++++|+..|++...
T Consensus 212 ~~~~~~~~~~A~~~~~~al~------------------------------------------------------------ 231 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALS------------------------------------------------------------ 231 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHH------------------------------------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHh------------------------------------------------------------
Confidence 44444444444444443322
Q ss_pred HHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHH
Q 004269 484 LKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSA 563 (764)
Q Consensus 484 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 563 (764)
..+.+..+|..+...|...|++++|+..|+++.+.+ +.+..++..+..++.+.|++++|
T Consensus 232 --------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 232 --------------------LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp --------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHH
T ss_pred --------------------hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 012245567777777888888888888888887753 23456778888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004269 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQN 643 (764)
Q Consensus 564 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 643 (764)
...|+.+.+.. +.+..+|+.+...+.+.|++++|.+.++++.+. .+.+..++..+...+.+.|++++|...++++.+
T Consensus 291 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~- 367 (388)
T 1w3b_A 291 EDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR- 367 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence 88888887753 456778888888888888888888888888753 234577888888888888888888888888885
Q ss_pred CCCCC-HHHHHHHHHHHHhcC
Q 004269 644 KVQPD-PSTCHFVFSGYVNCG 663 (764)
Q Consensus 644 ~~~p~-~~~~~~ll~~~~~~g 663 (764)
..|+ ...|..+-..+...|
T Consensus 368 -~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 368 -ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp -TCTTCHHHHHHHHHHHHHTC
T ss_pred -hCCCCHHHHHhHHHHHHHcc
Confidence 4564 334444444544444
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.8e-23 Score=215.09 Aligned_cols=285 Identities=10% Similarity=0.004 Sum_probs=137.4
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHH
Q 004269 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178 (764)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 178 (764)
+.|+++.|.+.+..+.+.. +.+...+..+...+...|++++|...++...+.. +.+...|..+..+|.+.|++++|+
T Consensus 11 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHH
Confidence 3445555555555444432 2233344444444455555555555555443321 233444555555555555555555
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 004269 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM 258 (764)
Q Consensus 179 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 258 (764)
..|+.+.+..+ .+..+|..+..++...|++++|.+.++.+.+..+.+...+..+...+...|++++|.+.|+++.+ .
T Consensus 88 ~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~ 164 (388)
T 1w3b_A 88 EHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--T 164 (388)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--h
Confidence 55555544311 12234555555555555555555555555544444445555555555556666666666666555 2
Q ss_pred cCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHH
Q 004269 259 MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS-SHTYDGFIRA 337 (764)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~ 337 (764)
.|+. ..+|+.+...+...|++++|...|+++.+.+ |+ ...+..+...
T Consensus 165 ~p~~------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 212 (388)
T 1w3b_A 165 QPNF------------------------------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNV 212 (388)
T ss_dssp CTTC------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred CCCC------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHH
Confidence 3332 1355566666666666666666666665532 22 3344445555
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHH
Q 004269 338 IVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAI 415 (764)
Q Consensus 338 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~ 415 (764)
+...|++++|...++...+.... +..++..+...|.+.|++++|...|+.+.... +..+|..+...+.+.|++++|.
T Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 213 LKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555555543322 23334444444444444444444444443321 2233444444444444444444
Q ss_pred HHHHHHh
Q 004269 416 KIFAKMR 422 (764)
Q Consensus 416 ~l~~~m~ 422 (764)
..|+++.
T Consensus 292 ~~~~~al 298 (388)
T 1w3b_A 292 DCYNTAL 298 (388)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-19 Score=198.61 Aligned_cols=340 Identities=11% Similarity=-0.074 Sum_probs=215.7
Q ss_pred hhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004269 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 131 (764)
...+......+...|++++|+..|+++...+ |+...|..+..++...|+++.|.+.++++.+.+ +.+...|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3445566777889999999999999998876 688889999999999999999999999999875 5567789999999
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhH
Q 004269 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
|...|++++|...|+++.... +++......++..+........+.+.+..+...+..|+...+..-............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 999999999999999987543 345555666666655555555555555444333322322222221111111112221
Q ss_pred HHHHHHHHHhc----------CCCCHhhHHHHHHHhh---ccCCHHHHHHHHHHHHH-----hhccCcchhccccccccc
Q 004269 212 VHEIWEDYIKH----------YSLSIFSLRKFVWSFT---RLRDLKSAYETLQHMVA-----LAMMGKLYINRTSEGRLR 273 (764)
Q Consensus 212 a~~~~~~~~~~----------~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 273 (764)
...+...+... .+.+...+..+...+. +.|+++.|..+|+++.+ ....|+...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~--------- 231 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK--------- 231 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHH---------
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccc---------
Confidence 11111111110 1223445555555444 48999999999999987 322332200
Q ss_pred ccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 004269 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKI 353 (764)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 353 (764)
.......+|..+...+...|++++|...|+++.+.. |+..++..+...+...|++++|...++.
T Consensus 232 --------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 232 --------------LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred --------------cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 000012588889999999999999999999998864 4466777888888899999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004269 354 MQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMR 422 (764)
Q Consensus 354 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~ 422 (764)
+.+.... +...+..+...|...|++++|...|+...... +...|..+...+...|++++|+..|+++.
T Consensus 296 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 296 ALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp HHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8876543 44556666666666666666666666655432 34445555555555555555555555543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-19 Score=194.90 Aligned_cols=250 Identities=14% Similarity=0.037 Sum_probs=167.9
Q ss_pred cCCHHHHHHHHHHHhh-----C----------C-CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHh
Q 004269 376 ALELDLAEALLDQISR-----C----------T-NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLF 439 (764)
Q Consensus 376 ~g~~~~a~~~~~~~~~-----~----------~-~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~ 439 (764)
.|++++|...|+++.. . + +..+|..+...+...|++++|...|+++.+ ..|+...+..
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~~~~~~~~~----- 275 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-LFPRVNSYIY----- 275 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH-HCCCHHHHHH-----
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCccHHHHHH-----
Confidence 6777777777777665 2 1 345677778888888899999888888876 1233333333
Q ss_pred cCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhc--CCCCChhhHHHHHH
Q 004269 440 GNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDS--KTPLGTPTYNTVLH 517 (764)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~ 517 (764)
+...|...|++++|...+++. ..+.+...|..+..
T Consensus 276 -------------------------------------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 312 (514)
T 2gw1_A 276 -------------------------------------------MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ 312 (514)
T ss_dssp -------------------------------------------HHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHH
Confidence 334455555555555555443 12234556777777
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004269 518 SLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDE 597 (764)
Q Consensus 518 ~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~ 597 (764)
.+...|++++|...|++..+.. +.+..++..+...+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHH
Confidence 7788888888888888877754 2355667777777778888888888887777653 2345667777788888888888
Q ss_pred HHHHHHHHHHCC-CCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004269 598 ALNLLDLVSLEG-IPHD----VLLYNTILKKACE---KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAM 669 (764)
Q Consensus 598 A~~~~~~m~~~~-~~p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 669 (764)
|...++++.... -.++ ...|..+...+.. .|++++|...++++.+.. +.+...+..+..+|.+.|++++|.
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHH
Confidence 888887776421 1111 3377777777777 788888888888877532 224556666667788888888888
Q ss_pred HHHHHHHH
Q 004269 670 EALQVLSM 677 (764)
Q Consensus 670 ~~~~~~~~ 677 (764)
+.+++...
T Consensus 470 ~~~~~a~~ 477 (514)
T 2gw1_A 470 TLFEESAD 477 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.5e-19 Score=188.31 Aligned_cols=337 Identities=10% Similarity=-0.050 Sum_probs=273.7
Q ss_pred cCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHH
Q 004269 44 MGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNK 123 (764)
Q Consensus 44 ~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 123 (764)
+...|+ ....+..+...+...|++++|+.+|+.+.... +.+...+..+..++...|+++.|...|+++.+.+ +.+..
T Consensus 19 ~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 95 (450)
T 2y4t_A 19 YFQSMA-DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTA 95 (450)
T ss_dssp ----CH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ccccHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHH
Confidence 333444 34556677888999999999999999998765 5578889999999999999999999999999985 55688
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh---hhhHHH------------HHHHhccCCHHHHHHHHHHHhhcC
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL---PVYNSF------------LGACAKLHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g 188 (764)
.+..+...|.+.|++++|...|+++.+.. +.+. ..+..+ ...+.+.|++++|+..|+.+.+..
T Consensus 96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 173 (450)
T 2y4t_A 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999997532 2233 455555 444889999999999999998864
Q ss_pred CCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccc
Q 004269 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTS 268 (764)
Q Consensus 189 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 268 (764)
+ .+..++..+..++...|++++|.+.++.+.+..+.+..++..+..+|...|++++|...|+++.+ ..|+..
T Consensus 174 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~----- 245 (450)
T 2y4t_A 174 V-WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHK----- 245 (450)
T ss_dssp T-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-----
T ss_pred C-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChH-----
Confidence 3 37788999999999999999999999999998888999999999999999999999999999987 455541
Q ss_pred cccccccccCCCccCCccccchhhhhhHHHH------------HHHHHccCCHHHHHHHHHHHHHCCCCCC-----cccH
Q 004269 269 EGRLRSSRLDIPIPLNALPVMKVLRWSFSDV------------IHACGRTQNSGLAEQLMLQMQSLGLQPS-----SHTY 331 (764)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~ 331 (764)
..+..+ ...+...|++++|+..|+++.+. .|+ ...+
T Consensus 246 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~ 298 (450)
T 2y4t_A 246 -------------------------RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSK 298 (450)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHH
Confidence 234333 88899999999999999999885 455 3467
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHH-----
Q 004269 332 DGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAA----- 404 (764)
Q Consensus 332 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~----- 404 (764)
..+...+.+.|++++|...++.+.+.... +...+..+..+|...|++++|...|+...... +...+..+..+
T Consensus 299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 299 ERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377 (450)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhh
Confidence 78888999999999999999999886533 67889999999999999999999999998763 44455555422
Q ss_pred -------HHhcC-----CHHHHHHHHHHH
Q 004269 405 -------CDTMD-----KPERAIKIFAKM 421 (764)
Q Consensus 405 -------~~~~~-----~~~~a~~l~~~m 421 (764)
|...| +.+++.+.|+++
T Consensus 378 ~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 378 QSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred cccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 33333 556777777763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-18 Score=191.01 Aligned_cols=333 Identities=9% Similarity=-0.087 Sum_probs=231.0
Q ss_pred hhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHH
Q 004269 51 ISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130 (764)
Q Consensus 51 ~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 130 (764)
....+......+...|++++|+..|+++.... +.++..+..+..++...|+++.|.+.++++.+.+ +.+...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 34556777888999999999999999999876 5677889999999999999999999999999875 557889999999
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc------CCCCChhhHHHHHHHHH
Q 004269 131 ALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR------MVGKNEVTYTELLKLAV 204 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~ 204 (764)
.|...|++++|...|+.+. . .|+ ..+..+..+...+....|...++.+... ...|+... +..+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~-~---~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~ 171 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLS-L---NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS----LASFF 171 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH----HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-c---CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH----HHHHH
Confidence 9999999999999997553 2 222 2233344555666778899999988654 12233333 33344
Q ss_pred hhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc--------CCHHHHHHHHHHHHHhhccCcchhcccccccccccc
Q 004269 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL--------RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
...+.+.+...+.......+........+...+... |++++|..+|+.+.+ ..|+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~--~~p~~~~~----------- 238 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS--ANTVDDPL----------- 238 (537)
T ss_dssp HTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHH-----------
T ss_pred HhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH--HCCCcchh-----------
Confidence 455555444433322222222233444444444433 478999999999887 34443100
Q ss_pred cCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
......+|..+...+...|++++|...|++..+. .|+..++..+...+...|++++|...++.+.+
T Consensus 239 ------------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 304 (537)
T 3fp2_A 239 ------------RENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVD 304 (537)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 0000136777788889999999999999999885 46667777888888889999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 357 NNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 357 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
.... +..++..+...|...|++++|...|+...... +...|..+...+...|++++|...|++..+
T Consensus 305 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 305 LNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6544 56677777778888888888888887776532 555677777777777777777777776654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-19 Score=189.63 Aligned_cols=320 Identities=9% Similarity=-0.028 Sum_probs=259.7
Q ss_pred chHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 004269 69 SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL 148 (764)
Q Consensus 69 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 148 (764)
..+...|..+.... +.+...+..+...+.+.|+++.|..+|+++.+.. +.+...+..+...|...|++++|...|+++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444455554443 4667788999999999999999999999999874 557889999999999999999999999999
Q ss_pred hhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCh----hhHHHH------------HHHHHhhcChhHH
Q 004269 149 GERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNE----VTYTEL------------LKLAVWQKNLSAV 212 (764)
Q Consensus 149 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~~~~~~a 212 (764)
.+.. +.+...+..+...|.+.|++++|...|+.+.+.. |+. .++..+ ...+...|++++|
T Consensus 87 l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 87 IQLK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7653 3456789999999999999999999999998853 433 455554 3348889999999
Q ss_pred HHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhh
Q 004269 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
...++.+.+..+.+..++..+..+|.+.|++++|..+|+++.+. .|+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~------------------------------ 210 (450)
T 2y4t_A 163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDN------------------------------ 210 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSC------------------------------
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC------------------------------
Confidence 99999999988889999999999999999999999999999883 3433
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc-HHHH------------HHHHHhcCChhHHHHHHHHHHHCCC
Q 004269 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT-YDGF------------IRAIVSDRGLRNGMEVLKIMQQNNL 359 (764)
Q Consensus 293 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~ 359 (764)
..+|..+...|...|++++|+..|+++... .|+... +..+ ...+...|++++|..+|+.+.+...
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p 288 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 288 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 258999999999999999999999999875 455443 3333 6788899999999999999998543
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHH
Q 004269 360 KPQ----DSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIR 430 (764)
Q Consensus 360 ~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~ 430 (764)
. + ...+..+...+.+.|++++|...++.+.... +..+|..+..+|...|++++|...|++..+ +.|+..
T Consensus 289 ~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p~~~ 363 (450)
T 2y4t_A 289 S-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE-HNENDQ 363 (450)
T ss_dssp S-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TSSSCH
T ss_pred c-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCcchH
Confidence 3 2 3467888999999999999999999986532 677899999999999999999999999988 445543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-18 Score=188.31 Aligned_cols=430 Identities=10% Similarity=-0.014 Sum_probs=259.3
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
...+..+...+.+.|+++.|.+.|+++.+.+ +.+...+..+...|...|++++|++.|+++.+.+ +.+...+..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHH
Confidence 4557778888889999999999999999875 5578899999999999999999999999987654 345678888999
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcC---CCCHhhHHHHHHHhhccCCH
Q 004269 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY---SLSIFSLRKFVWSFTRLRDL 243 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 243 (764)
++...|++++|...|+.+.. .|+.. ...+..+...+....+...++.+.+.. .+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 99999999999999974432 22222 222334555666677888888886531 11111122233334444555
Q ss_pred HHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHcc--------CCHHHHHHH
Q 004269 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT--------QNSGLAEQL 315 (764)
Q Consensus 244 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~a~~~ 315 (764)
+.+...+..... ..+.. ...+..+...+... |++++|..+
T Consensus 177 ~~~~~~~~~~~~--~~~~~------------------------------~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~ 224 (537)
T 3fp2_A 177 HLEVSSVNTSSN--YDTAY------------------------------ALLSDALQRLYSATDEGYLVANDLLTKSTDM 224 (537)
T ss_dssp HHHHHTSCCCCS--SCSSH------------------------------HHHHHHHHHHHTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccc--cccHH------------------------------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 444333222111 00000 01222333222222 467788888
Q ss_pred HHHHHHCCCCCCc--------ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004269 316 MLQMQSLGLQPSS--------HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLD 387 (764)
Q Consensus 316 ~~~m~~~g~~p~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 387 (764)
|+++.+. .|+. .++..+...+...|++++|...++.+.+.. |+...+..+...|...|++++|...|+
T Consensus 225 ~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 225 YHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888764 3332 134445555666777777777777776643 334555555555666666666666665
Q ss_pred HHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHH
Q 004269 388 QISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIE 465 (764)
Q Consensus 388 ~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (764)
...... +..+|..+...+...|++++|...|++..+
T Consensus 301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------------------------------ 338 (537)
T 3fp2_A 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS------------------------------------------ 338 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------------------
T ss_pred HHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------------------------------
Confidence 554321 334455555555555555555555554433
Q ss_pred HHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 004269 466 MDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA 545 (764)
Q Consensus 466 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~ 545 (764)
..+.+...|..+...+...|++++|...|+++.+.. +.+..
T Consensus 339 --------------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 379 (537)
T 3fp2_A 339 --------------------------------------LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPE 379 (537)
T ss_dssp --------------------------------------HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTH
T ss_pred --------------------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 011233455566666677777777777777766653 23455
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCC
Q 004269 546 TYNIMIDCCSIIRCFKSASALVSMMVRDG-----FYPQTMTYTALIKILLDY----------GDFDEALNLLDLVSLEGI 610 (764)
Q Consensus 546 t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~ 610 (764)
.+..+...+...|++++|...|+.+.+.. .......+..+...|.+. |++++|...++++.+..
T Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 458 (537)
T 3fp2_A 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD- 458 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-
Confidence 66666777777777777777777766532 111122233444556666 77778888877776542
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004269 611 PHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 611 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
+.+...+..+...|.+.|++++|.+.+++..+
T Consensus 459 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 459 PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34566777777777778888888887777775
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-16 Score=161.35 Aligned_cols=311 Identities=9% Similarity=-0.076 Sum_probs=243.4
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 132 (764)
..+..+...+...|++++|+..|+.+.... +.++..+..+..++...|+++.|...++++.+.. +.+...+..+...|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 345566777899999999999999998876 4567788889999999999999999999999874 44678899999999
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCC----ChhhhHHH------------HHHHhccCCHHHHHHHHHHHhhcCCCCChhhH
Q 004269 133 CKGGYLEEASNLIYFLGERYGIYP----ILPVYNSF------------LGACAKLHSMVHANLCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 196 (764)
...|++++|...|++..+. .| +...+..+ ...+...|++++|...|+.+.+..+ .+..++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 157 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELR 157 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHH
Confidence 9999999999999999753 23 33444444 5788899999999999999988643 367788
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccc
Q 004269 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
..+...+...|++++|...++.+.+..+.+..++..+...+...|++++|...|+...+ ..|+..........+
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~---- 231 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQV---- 231 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCccchHHHHHHHHH----
Confidence 88999999999999999999999998888999999999999999999999999999987 444431100000000
Q ss_pred cCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc-----cHHHHHHHHHhcCChhHHHHHH
Q 004269 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH-----TYDGFIRAIVSDRGLRNGMEVL 351 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~ 351 (764)
.. ......+...+.+.|++++|...+++..+.. |+.. .+..+...+...|++++|...+
T Consensus 232 ------------~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 232 ------------KK--LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp ------------HH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------HH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 00 0011133666888899999999999888753 4432 2344566778888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 004269 352 KIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRC 392 (764)
Q Consensus 352 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 392 (764)
+...+.... +..++..+...|.+.|++++|...|+.....
T Consensus 296 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 296 SEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888876433 5667778888888888888888888887765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-13 Score=150.88 Aligned_cols=556 Identities=10% Similarity=0.033 Sum_probs=357.3
Q ss_pred HHHHHHHHhhCCcchHHHHHHhccccCCC--CChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004269 56 QMQIVDALCRGERSRASHLLLNLGHAHHS--LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 56 ~~~i~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 133 (764)
...+.+|...|.+.+|++++++....+.+ -+...-+.++.+..+. +.....++.++..... ..-+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHH
Confidence 34567788999999999999998854311 2334456666666665 5666667666665221 333667788
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHH
Q 004269 134 KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVH 213 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 213 (764)
..|.+++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+-+++...|++++|.
T Consensus 1061 ~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred hCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 89999999999987521 1122233332 668899999888854 25778889999999999999999
Q ss_pred HHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhh
Q 004269 214 EIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLR 293 (764)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (764)
+.|.+. .|...|..++..+.+.|++++|.+.|....+.. ++.
T Consensus 1126 dsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~------------------------------- 1167 (1630)
T 1xi4_A 1126 DSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RES------------------------------- 1167 (1630)
T ss_pred HHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccc-------------------------------
Confidence 998653 677888889999999999999999999877633 222
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004269 294 WSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVEC 373 (764)
Q Consensus 294 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 373 (764)
...+.++.+|++.++++....+ .+ .|+...|..+-..|...|++++|..+|... ..|..+...|
T Consensus 1168 ~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tL 1231 (1630)
T 1xi4_A 1168 YVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTL 1231 (1630)
T ss_pred cccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHH
Confidence 2344588888888888753333 22 346667777888888999999999999874 4788899999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhh
Q 004269 374 SKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFS 453 (764)
Q Consensus 374 ~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~ 453 (764)
.+.|+++.|.+.+++.. +..+|..+-.+|...|++..|......+. .+...+..++..+.+.|.++++...++
T Consensus 1232 vkLge~q~AIEaarKA~---n~~aWkev~~acve~~Ef~LA~~cgl~Ii----v~~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1232 VHLGEYQAAVDGARKAN---STRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred HHhCCHHHHHHHHHHhC---CHHHHHHHHHHHhhhhHHHHHHHHHHhhh----cCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999988774 77888888888888888888887665432 344455566666766666655544432
Q ss_pred hhhhHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHh--cCcHHHHHHHHHhcCCCC-------ChhhHHHHHHHHHHcC
Q 004269 454 QVDSAKRINAIEMDMARNNIQH-SHISMKNLLKALGA--EGMIRELIQYFCDSKTPL-------GTPTYNTVLHSLVEAQ 523 (764)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~-------~~~~~~~li~~~~~~~ 523 (764)
. .. ++.+ ....|+.|...|++ -+++.++.+.|.....-| +...|.-++..|.+.|
T Consensus 1305 ~-------------aL--~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~ 1369 (1630)
T 1xi4_A 1305 A-------------AL--GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 1369 (1630)
T ss_pred H-------------Hh--ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcc
Confidence 1 11 1222 22344455555554 456677777776543322 3457888888899999
Q ss_pred ChHHHHHH-------------HHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004269 524 ESHRAMEI-------------FKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590 (764)
Q Consensus 524 ~~~~A~~l-------------~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 590 (764)
+++.|... |++.... ..|...|-..+.-|. +....++.-+.......+. ++..+..+.
T Consensus 1370 e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl--~~~P~~lndLl~~l~~rlD-----~~R~V~l~~ 1440 (1630)
T 1xi4_A 1370 EYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLD-----HTRAVNYFS 1440 (1630)
T ss_pred cHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHH--hhChHHHHHHHHHhhhcCC-----hHHHHHHHH
Confidence 99888732 2222211 335555555555554 2223333333333221122 244566677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH------------HHHHHHHHHCCCCCCHHHHHHHHH-
Q 004269 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVI------------EFIIEQMHQNKVQPDPSTCHFVFS- 657 (764)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a------------~~~~~~m~~~~~~p~~~~~~~ll~- 657 (764)
+.|.+.-+..+++.....+ +..+-..|...+....+++.- ..+..++.++ +..-+..+..
T Consensus 1441 ~~~~l~lik~yl~~vq~~n---~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekh----eLl~frrIAa~ 1513 (1630)
T 1xi4_A 1441 KVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRIAAY 1513 (1630)
T ss_pred HcCChHHhHHHHHHHHHhc---chhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhh----hHHHHHHHHHH
Confidence 7777777777776665322 223333333444444443321 1222222211 1222233333
Q ss_pred HHHhcCChHHHHHHHHHHHHhhhccccCchHhhhHHHHHhhhhccHHHHHHHHHHhhhcchhhHHHHhhhhhhhhhhcCC
Q 004269 658 GYVNCGFHNSAMEALQVLSMRMLCEEVSTLEEKRSDFEDLILAEDSEAESRILQFCEDSNENLAFTAALLQLRWCTIVGF 737 (764)
Q Consensus 658 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~g~ 737 (764)
.|.+.|+|..|.+++++- + .+ ...+.....+++.+-..+++..+...+++-.++..|..+..++.|..
T Consensus 1514 ly~~n~~~~~ai~l~k~d---~------l~---~dAm~~a~~S~d~e~~e~ll~~F~~~~~~E~f~a~Ly~cy~l~~pd~ 1581 (1630)
T 1xi4_A 1514 LFKGNNRWKQSVELCKKD---S------LY---KDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDV 1581 (1630)
T ss_pred HHHhcCcHHHHHHHHHhc---c------CH---HHHHHHHHHcCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccCCchH
Confidence 556679999999988732 1 22 22345556678888888888888887888888888888877776644
Q ss_pred c
Q 004269 738 P 738 (764)
Q Consensus 738 ~ 738 (764)
.
T Consensus 1582 v 1582 (1630)
T 1xi4_A 1582 V 1582 (1630)
T ss_pred H
Confidence 3
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-15 Score=157.54 Aligned_cols=305 Identities=8% Similarity=-0.037 Sum_probs=252.2
Q ss_pred ChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHH
Q 004269 86 GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165 (764)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 165 (764)
++..+..+...+...|+++.|...|+++.+.. +.+...+..+...|...|++++|...|+++.+.. +.+...|..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHH
Confidence 34567778888999999999999999999875 5578899999999999999999999999997653 33567899999
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCC--CChhhHHHH------------HHHHHhhcChhHHHHHHHHHHhcCCCCHhhHH
Q 004269 166 GACAKLHSMVHANLCLDLMDSRMVG--KNEVTYTEL------------LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLR 231 (764)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (764)
..+...|++++|...|+...+..+. .+...+..+ ...+...|++++|.+.++.+.+..+.+..++.
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 158 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE 158 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 9999999999999999999885320 133344443 46788999999999999999998889999999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHH
Q 004269 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL 311 (764)
Q Consensus 232 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 311 (764)
.+..++...|++++|...++.+.+ ..|+. ..+|..+...+...|++++
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~------------------------------~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASK--LKSDN------------------------------TEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT--TCSCC------------------------------HHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999987 34443 2588999999999999999
Q ss_pred HHHHHHHHHHCCCCCCcc-cHH------------HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHH
Q 004269 312 AEQLMLQMQSLGLQPSSH-TYD------------GFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDS----TIATLSVECS 374 (764)
Q Consensus 312 a~~~~~~m~~~g~~p~~~-~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~ 374 (764)
|...|++..+.. |+.. .+. .+...+...|++++|...++.+.+.... +.. .+..+...|.
T Consensus 207 A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 207 SLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHH
Confidence 999999998753 4432 222 2255688999999999999999986544 332 2445778999
Q ss_pred hcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCH
Q 004269 375 KALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDI 429 (764)
Q Consensus 375 ~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~ 429 (764)
+.|++++|...++...... +..+|..+...|...|++++|...|++..+ ..|+.
T Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-~~p~~ 339 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE-HNEND 339 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCTTC
T ss_pred HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCC
Confidence 9999999999999987643 667888999999999999999999999988 44553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-13 Score=152.34 Aligned_cols=556 Identities=8% Similarity=0.023 Sum_probs=314.3
Q ss_pred hHHHHHHHHhhcccchhhhhccccccchhhh-hcc-----------ccCCchhhhh--------hhHHHHHHHHHhhCCc
Q 004269 9 RFQLIADSFCKSKFHKHERRNVANKLELSRT-LTT-----------TMGLNEESIS--------KATQMQIVDALCRGER 68 (764)
Q Consensus 9 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~-~~~-----------~~~~~p~~~~--------~~~~~~i~~~~~~~~~ 68 (764)
..+.++..|...|.+.+|+ +++++....-+ |.. +....+.... .....+...+...|.+
T Consensus 987 eVs~~vKaf~~aglp~Eai-eLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELI-ELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELF 1065 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHH-HHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCH
Confidence 4566788899999999999 88777642210 000 0000000000 0001113334456777
Q ss_pred chHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 004269 69 SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFL 148 (764)
Q Consensus 69 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 148 (764)
++|..+|++.. ......+.++. ..++++.|.++.++. -++.+|..+..++.+.|++++|+..|.+.
T Consensus 1066 EEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1066 EEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 77777777742 11112233332 445677777766644 24567778888888888888888887643
Q ss_pred hhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHh
Q 004269 149 GERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIF 228 (764)
Q Consensus 149 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 228 (764)
.|...|..++..+.+.|++++|.+.|...++.. +++...+.+..+|++.++++....+. ..++..
T Consensus 1132 -------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI------~~~n~a 1196 (1630)
T 1xi4_A 1132 -------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI------NGPNNA 1196 (1630)
T ss_pred -------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH------hCCCHH
Confidence 245577778888888888888888887766653 33333334777777777777544332 234555
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCC
Q 004269 229 SLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN 308 (764)
Q Consensus 229 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 308 (764)
.+..+...|...|++++|..+|.... .|..+..++.+.|+
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA~----------------------------------------ny~rLA~tLvkLge 1236 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNVS----------------------------------------NFGRLASTLVHLGE 1236 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhh----------------------------------------HHHHHHHHHHHhCC
Confidence 66678888888888888888888752 78888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004269 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQ 388 (764)
Q Consensus 309 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 388 (764)
++.|.+.+++.. +..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++.
T Consensus 1237 ~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1237 YQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888752 567888888888888888888776543 333566677888888888999999888877
Q ss_pred HhhCC--CCccHHHHHHHHHhc--CCHHHHHHHHHHHhccCCC------CHHHHHHHHHHhcCCCCchhhchhhhhhhhH
Q 004269 389 ISRCT--NPKPFSAFLAACDTM--DKPERAIKIFAKMRQKLRP------DIRTYELLFSLFGNVNAPYEEGNMFSQVDSA 458 (764)
Q Consensus 389 ~~~~~--~~~~~~~li~~~~~~--~~~~~a~~l~~~m~~~~~p------~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 458 (764)
..... +...|+-+...|++. ++..+++++|..-. ++.| +...|.-+.-.|.+.+.++.|....-.-...
T Consensus 1306 aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri-ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~ 1384 (1630)
T 1xi4_A 1306 ALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV-NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 1384 (1630)
T ss_pred HhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHh
Confidence 76543 444566666666654 34555555555322 2222 2333444444444444444333111110001
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 004269 459 KRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC 538 (764)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~ 538 (764)
..-+..+.+... -..+...|...+.-|.... ..++.-+.... . ...-++-.+..+.+.++..-+...+...+..
T Consensus 1385 a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~--P~~lndLl~~l-~-~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~ 1458 (1630)
T 1xi4_A 1385 AWKEGQFKDIIT--KVANVELYYRAIQFYLEFK--PLLLNDLLMVL-S-PRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH 1458 (1630)
T ss_pred hhhhHHHHHHhc--ccccHHHHHHHHHHHHhhC--hHHHHHHHHHh-h-hcCChHHHHHHHHHcCChHHhHHHHHHHHHh
Confidence 111111111111 1234555555555555332 11111110000 0 0001122333333444444444444444332
Q ss_pred CCCCCHHHHHHHHHHHHhhCChhHH------------HHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHH
Q 004269 539 GIPPNAATYNIMIDCCSIIRCFKSA------------SALVSMMVRDGFYPQTMTYTAL-IKILLDYGDFDEALNLLDLV 605 (764)
Q Consensus 539 g~~p~~~t~~~ll~~~~~~g~~~~a------------~~~~~~~~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m 605 (764)
+.. ..=..+...+....+++.- ..+-.++.++ +..-+..+ ...|.+.|++..|.+++.+-
T Consensus 1459 n~~---~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekh----eLl~frrIAa~ly~~n~~~~~ai~l~k~d 1531 (1630)
T 1xi4_A 1459 NNK---SVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRIAAYLFKGNNRWKQSVELCKKD 1531 (1630)
T ss_pred cch---hhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhh----hHHHHHHHHHHHHHhcCcHHHHHHHHHhc
Confidence 211 1111222222222222211 1222222221 12222333 33455669999999998874
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 004269 606 SLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEA 671 (764)
Q Consensus 606 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 671 (764)
| .|.-.|....+.|+.+.+++++.-..+. -+..+|...+-.|...=+.+-++++
T Consensus 1532 ---~------l~~dAm~~a~~S~d~e~~e~ll~~F~~~---~~~E~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1532 ---S------LYKDAMQYASESKDTELAEELLQWFLQE---EKRECFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred ---c------CHHHHHHHHHHcCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhccCCchHHHHH
Confidence 2 4556778889999999999999998865 3567788888888888888887764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.6e-16 Score=156.39 Aligned_cols=284 Identities=8% Similarity=-0.053 Sum_probs=161.3
Q ss_pred CChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH
Q 004269 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 164 (764)
.+...+..+...+...|+++.|.++++++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...|..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHH
Confidence 344455555555555666666666666666553 3344445555556666666666666666665432 2234455666
Q ss_pred HHHHhccC-CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCH
Q 004269 165 LGACAKLH-SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243 (764)
Q Consensus 165 i~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 243 (764)
...+...| ++++|...|+........ +..+|..+...+...|++++|...++...+..+.+...+..+...|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 66666666 666666666666554321 3455566666666666666666666666665555555666666666666666
Q ss_pred HHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004269 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 244 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 323 (764)
++|...|+++.+ ..|+. ...|..+...+...|++++|...|++..+..
T Consensus 176 ~~A~~~~~~al~--~~~~~------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 176 KLAERFFSQALS--IAPED------------------------------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHHHT--TCTTC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCC------------------------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 666666666665 23332 1356666666666666666666666665421
Q ss_pred --------CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--
Q 004269 324 --------LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT-- 393 (764)
Q Consensus 324 --------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-- 393 (764)
...+..++..+...+...|++++|...++...+.... +...+..+...|.+.|++++|...|++.....
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 0122345555666666666666666666666654432 34455555555666666666666665554432
Q ss_pred CCccHHHHHHHH
Q 004269 394 NPKPFSAFLAAC 405 (764)
Q Consensus 394 ~~~~~~~li~~~ 405 (764)
+...+..+..++
T Consensus 303 ~~~~~~~l~~~~ 314 (330)
T 3hym_B 303 DTFSVTMLGHCI 314 (330)
T ss_dssp CHHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 333344444444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-18 Score=185.84 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=128.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 004269 509 TPTYNTVLHSLVEAQESHRAMEIFKQMKT---CGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTAL 585 (764)
Q Consensus 509 ~~~~~~li~~~~~~~~~~~A~~l~~~m~~---~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 585 (764)
..+||++|++|++.|++++|.++|++|.+ .|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||..|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999988764 589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHH
Q 004269 586 IKILLDYGD-FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD------PSTCHFVFSG 658 (764)
Q Consensus 586 i~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~ll~~ 658 (764)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. ..++..+++ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999998 578999999999999999999999999877665 444444554 3466665 3444455667
Q ss_pred HHhcC
Q 004269 659 YVNCG 663 (764)
Q Consensus 659 ~~~~g 663 (764)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 77666
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-15 Score=153.30 Aligned_cols=297 Identities=8% Similarity=-0.091 Sum_probs=242.0
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 132 (764)
..+......+...|++++|+++|+.+.... +.+...+..++.++...|+++.|..+++++.+.. +.+...+..+...+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 344556777888999999999999998776 4556677778888888999999999999999874 45678899999999
Q ss_pred HccC-CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhH
Q 004269 133 CKGG-YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 133 ~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
...| ++++|...|++..+.. +.+...|..+...+...|++++|...|+...+.... +..++..+...+...|++++
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHH
Confidence 9999 9999999999987543 345668999999999999999999999999886433 45677778889999999999
Q ss_pred HHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchh
Q 004269 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
|...++...+..+.+..++..+...+...|++++|...|+++.+.......... +...
T Consensus 178 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------------------~~~~- 235 (330)
T 3hym_B 178 AERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT---------------------VDKW- 235 (330)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT---------------------TTTC-
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc---------------------ccHH-
Confidence 999999999988889999999999999999999999999999874321110000 0000
Q ss_pred hhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371 (764)
Q Consensus 292 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 371 (764)
..+|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+..
T Consensus 236 -~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 312 (330)
T 3hym_B 236 -EPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGH 312 (330)
T ss_dssp -CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHH
Confidence 1588999999999999999999999998864 235678888899999999999999999999876543 5666777777
Q ss_pred HH-HhcCCH
Q 004269 372 EC-SKALEL 379 (764)
Q Consensus 372 ~~-~~~g~~ 379 (764)
++ ...|+.
T Consensus 313 ~~~~~~g~~ 321 (330)
T 3hym_B 313 CIEMYIGDS 321 (330)
T ss_dssp HHHTTTTC-
T ss_pred HHHHHhCch
Confidence 66 344544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-13 Score=147.35 Aligned_cols=337 Identities=8% Similarity=-0.034 Sum_probs=179.0
Q ss_pred hcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhc----cCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCc
Q 004269 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR----LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (764)
.+++++|...|+...+. .+..++..|...|.. .++.++|.+.|++..+.| +.
T Consensus 56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~------------------- 111 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP------------------- 111 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-------------------
T ss_pred CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH-------------------
Confidence 44555555555544432 234444455555555 556666666666655422 11
Q ss_pred cCCccccchhhhhhHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHH
Q 004269 282 PLNALPVMKVLRWSFSDVIHACGR----TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS----DRGLRNGMEVLKI 353 (764)
Q Consensus 282 ~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~ 353 (764)
..+..|...|.. .+++++|+..|++..+.| +...+..+-..+.. .+++++|...|+.
T Consensus 112 ------------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 176 (490)
T 2xm6_A 112 ------------QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSK 176 (490)
T ss_dssp ------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 244445555555 556666666666665543 33344444444444 4566666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCccHHHHHHHHHh----cCCHHHHHHHHHHHhc-c
Q 004269 354 MQQNNLKPQDSTIATLSVECSK----ALELDLAEALLDQISRCTNPKPFSAFLAACDT----MDKPERAIKIFAKMRQ-K 424 (764)
Q Consensus 354 ~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~l~~~m~~-~ 424 (764)
..+.| +...+..+...|.. .++.++|...|......++...+..+...|.. .+++++|...|++..+ +
T Consensus 177 a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 177 AAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred HHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 65553 44455555555555 56666666666666555455555555555554 5566666666665544 2
Q ss_pred CCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCcHHHHHHHH
Q 004269 425 LRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA----EGMIRELIQYF 500 (764)
Q Consensus 425 ~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 500 (764)
. .. .+..+...|.. .++.++|...|
T Consensus 254 ~---~~------------------------------------------------a~~~lg~~y~~g~~~~~d~~~A~~~~ 282 (490)
T 2xm6_A 254 N---SI------------------------------------------------AQFRLGYILEQGLAGAKEPLKALEWY 282 (490)
T ss_dssp C---HH------------------------------------------------HHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred C---HH------------------------------------------------HHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 1 00 11112222222 45555555555
Q ss_pred HhcCCCCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhC---ChhHHHHHHHHHHH
Q 004269 501 CDSKTPLGTPTYNTVLHSLVEA-----QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR---CFKSASALVSMMVR 572 (764)
Q Consensus 501 ~~~~~~~~~~~~~~li~~~~~~-----~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~ 572 (764)
++.....+...+..+...|... ++.++|+..|++..+.| +...+..+-..|...| ++++|..+|+...+
T Consensus 283 ~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 283 RKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 5543333444555555555554 56666666666666553 3334444444444433 55666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 004269 573 DGFYPQTMTYTALIKILLD----YGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE----KGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 573 ~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 644 (764)
.| +...+..|...|.. .++.++|.++|++..+.| ++..+..|...|.. .++.++|...|++..+.+
T Consensus 360 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 360 KG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 43 45555556666665 566666666666665543 34555555555555 566666666666666543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.1e-18 Score=183.05 Aligned_cols=126 Identities=18% Similarity=0.203 Sum_probs=115.5
Q ss_pred CCCHHHHHHHHHHHHhhCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004269 541 PPNAATYNIMIDCCSIIRCFKSASALVSMMVR---DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLY 617 (764)
Q Consensus 541 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 617 (764)
.--..||+++|++|++.|++++|.++|++|.+ .|+.||+.|||+||++|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33457999999999999999999999988875 489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 004269 618 NTILKKACEKGR-IDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHN 666 (764)
Q Consensus 618 ~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 666 (764)
++||.++++.|+ .+.|.++|++|.+.|+.||..+|++++.++.+.+-++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~ 253 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHH
Confidence 999999999998 4789999999999999999999999998777665333
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-15 Score=158.31 Aligned_cols=258 Identities=7% Similarity=-0.133 Sum_probs=165.7
Q ss_pred HHhhCCcchHHH-HHHhccccCC---CCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC
Q 004269 62 ALCRGERSRASH-LLLNLGHAHH---SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY 137 (764)
Q Consensus 62 ~~~~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 137 (764)
+...|++++|+. .|++...... ..+...+..+...+...|+++.|...++++.+.. +.+...+..+...|...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445688899998 8887665432 1135667888888889999999999999999875 5577788899999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHH---------------HHHH
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE---------------LLKL 202 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---------------ll~~ 202 (764)
+++|...|+++.+.. +.+..++..+...|...|++++|...|+.+....+.. ...+.. .+..
T Consensus 114 ~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 114 ELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHH
T ss_pred HHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHH
Confidence 999999999887643 3466788889999999999999999999988764332 222211 1222
Q ss_pred HHhhcChhHHHHHHHHHHhcCCC--CHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCC
Q 004269 203 AVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
+...|++++|...++.+.+..+. +..++..+..+|...|++++|...|+++.+ ..|+.
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~------------------ 250 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPND------------------ 250 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC------------------
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCC------------------
Confidence 33666666666666666654444 556666666666666666666666666655 23332
Q ss_pred ccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+
T Consensus 251 ------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 251 ------------YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1356666666666666666666666665532 12334555555566666666666666665554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8.4e-16 Score=159.61 Aligned_cols=292 Identities=9% Similarity=-0.040 Sum_probs=225.1
Q ss_pred HHhhcccchhhhhccccccchhhhhccccCCchhh---hhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHH
Q 004269 16 SFCKSKFHKHERRNVANKLELSRTLTTTMGLNEES---ISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH 92 (764)
Q Consensus 16 ~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~---~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (764)
.+.-.|++++|. . ..|...+...|+. ....+..+...+...|++++|+..|+++.... +.+...+..
T Consensus 34 ~~~~~~~~~~a~-~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 103 (368)
T 1fch_A 34 AHPWLSDYDDLT-S--------ATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQY 103 (368)
T ss_dssp -------------C--------HHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHH
T ss_pred hhHHHHHHHHHH-h--------hhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 345567777777 3 0333334444432 34556677888999999999999999999876 557778899
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHH---------
Q 004269 93 ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS--------- 163 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~--------- 163 (764)
+..++...|+++.|.+.++++.+.+ +.+..++..+...|...|++++|...|+++.+..+- +...+..
T Consensus 104 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 180 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA--YAHLVTPAEEGAGGAG 180 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT--TGGGCC----------
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHhhhhc
Confidence 9999999999999999999999875 557889999999999999999999999999764322 2222221
Q ss_pred ------HHHHHhccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHH
Q 004269 164 ------FLGACAKLHSMVHANLCLDLMDSRMVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236 (764)
Q Consensus 164 ------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 236 (764)
.+..+...|++++|...|+.+.+..+.. +..++..+...+...|++++|...++.+.+..+.+..++..+..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 260 (368)
T 1fch_A 181 LGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT 260 (368)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 2333448899999999999998864332 478889999999999999999999999999888889999999999
Q ss_pred hhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHH
Q 004269 237 FTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLM 316 (764)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 316 (764)
+...|++++|...|+++.+ ..|+. ..+|..+...|.+.|++++|...|
T Consensus 261 ~~~~g~~~~A~~~~~~al~--~~~~~------------------------------~~~~~~l~~~~~~~g~~~~A~~~~ 308 (368)
T 1fch_A 261 LANGNQSEEAVAAYRRALE--LQPGY------------------------------IRSRYNLGISCINLGAHREAVEHF 308 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCc------------------------------HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999988 44543 258999999999999999999999
Q ss_pred HHHHHCCCCC----------CcccHHHHHHHHHhcCChhHHHHHHH
Q 004269 317 LQMQSLGLQP----------SSHTYDGFIRAIVSDRGLRNGMEVLK 352 (764)
Q Consensus 317 ~~m~~~g~~p----------~~~~~~~ll~~~~~~~~~~~a~~~~~ 352 (764)
++..+..... ...+|..+..++...|+.++|..+++
T Consensus 309 ~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 309 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 9987642111 14577788888888888888887765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-13 Score=150.80 Aligned_cols=163 Identities=9% Similarity=0.002 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 004269 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNA--ATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK- 587 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~- 587 (764)
.|..++..+.+.|++++|..+|+++.+. .|+. ..|......+.+.|++++|..+|+...+... .+...|.....
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~ 399 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHH
Confidence 3444444445555555555555555553 3332 2455555555556666666666666655321 11222211111
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCC
Q 004269 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK-VQPD--PSTCHFVFSGYVNCGF 664 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~g~ 664 (764)
.+...|+.++|..+|++..+.. +.++..|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 1224566666666666665431 2345666666666666667777777776666542 1221 2245555555566677
Q ss_pred hHHHHHHHHHHHH
Q 004269 665 HNSAMEALQVLSM 677 (764)
Q Consensus 665 ~~~a~~~~~~~~~ 677 (764)
.+.+..+.+++..
T Consensus 479 ~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 479 LASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-12 Score=141.51 Aligned_cols=353 Identities=10% Similarity=0.001 Sum_probs=284.3
Q ss_pred CCCHhhHHHHHHHhhc----cCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHH
Q 004269 224 SLSIFSLRKFVWSFTR----LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299 (764)
Q Consensus 224 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 299 (764)
..++.++..+...|.. .++++.|...|++..+.| +. ..+..|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~-------------------------------~a~~~L 81 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YT-------------------------------PAEYVL 81 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-------------------------------HHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CH-------------------------------HHHHHH
Confidence 3455666666667766 889999999999998742 11 477788
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 300 IHACGR----TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS----DRGLRNGMEVLKIMQQNNLKPQDSTIATLSV 371 (764)
Q Consensus 300 i~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 371 (764)
...|.. .+++++|+..|++..+.| +...+..|-..+.. .+++++|...|+...+.| +...+..|..
T Consensus 82 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~ 155 (490)
T 2xm6_A 82 GLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGD 155 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 888888 899999999999998865 55666777777777 789999999999998876 5667778888
Q ss_pred HHHh----cCCHHHHHHHHHHHhhCCCCccHHHHHHHHHh----cCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCC
Q 004269 372 ECSK----ALELDLAEALLDQISRCTNPKPFSAFLAACDT----MDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNV 442 (764)
Q Consensus 372 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~ 442 (764)
.|.. .++.++|...|+...+.++...+..+...|.. .+++++|+..|++..+ + +.
T Consensus 156 ~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~------------- 219 (490)
T 2xm6_A 156 AYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DE------------- 219 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH-------------
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CH-------------
Confidence 8887 78999999999998887788888888888887 8999999999988766 3 11
Q ss_pred CCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCcHHHHHHHHHhcCCCCChhhHHHHHHH
Q 004269 443 NAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA----EGMIRELIQYFCDSKTPLGTPTYNTVLHS 518 (764)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~li~~ 518 (764)
..+..+...|.. .++.++|...|++.....+...+..+...
T Consensus 220 -----------------------------------~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 220 -----------------------------------LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp -----------------------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 122233444443 67899999999886555667777778888
Q ss_pred HHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004269 519 LVE----AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSII-----RCFKSASALVSMMVRDGFYPQTMTYTALIKIL 589 (764)
Q Consensus 519 ~~~----~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 589 (764)
|.. .++.++|+..|++..+.| +...+..+-..|... +++++|...|+...+.| +...+..+...|
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 338 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIY 338 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 887 899999999999998875 455666677777776 89999999999999875 456777788888
Q ss_pred HhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-
Q 004269 590 LDYG---DFDEALNLLDLVSLEGIPHDVLLYNTILKKACE----KGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVN- 661 (764)
Q Consensus 590 ~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~- 661 (764)
...| +.++|.++|++..+.| ++..+..|...|.. .++.++|.+.+++..+.| +...+..|-..|..
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYG 412 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred HhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcC
Confidence 8767 7899999999998764 67888889998988 899999999999999865 46677777778887
Q ss_pred ---cCChHHHHHHHHHHHHhh
Q 004269 662 ---CGFHNSAMEALQVLSMRM 679 (764)
Q Consensus 662 ---~g~~~~a~~~~~~~~~~~ 679 (764)
.+++++|.+.+++....+
T Consensus 413 ~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCC
Confidence 899999999999877655
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-15 Score=152.34 Aligned_cols=289 Identities=10% Similarity=-0.006 Sum_probs=121.0
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHH
Q 004269 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHAN 178 (764)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 178 (764)
+.|+.++|.++++++ +++.+|..|..++.+.|++++|++.|.+. +|...|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 445667777777766 22246777777777777777777777542 34556777777777777777777
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhc
Q 004269 179 LCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAM 258 (764)
Q Consensus 179 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 258 (764)
..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+.
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~---- 149 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---- 149 (449)
T ss_dssp -----------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHTT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----
Confidence 766655553 3446667777777777777777666653 3566678888888888888888888888651
Q ss_pred cCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 004269 259 MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAI 338 (764)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 338 (764)
.|..++.++.+.|++++|++.++++ .++.+|..++.+|
T Consensus 150 ------------------------------------n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aC 187 (449)
T 1b89_A 150 ------------------------------------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 187 (449)
T ss_dssp ------------------------------------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHH
T ss_pred ------------------------------------hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHH
Confidence 7888888999999999999888887 2678888889999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhc--CCHHHH
Q 004269 339 VSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACDTM--DKPERA 414 (764)
Q Consensus 339 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~--~~~~~a 414 (764)
+..|+++.|...... +...+.-...++..|.+.|.+++|..+++...... ....|+-|--.|++. ++..+.
T Consensus 188 v~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~eh 262 (449)
T 1b89_A 188 VDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 262 (449)
T ss_dssp HHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999998888554443 22334445568888888899999888888876553 444566666666654 233344
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHH
Q 004269 415 IKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIR 494 (764)
Q Consensus 415 ~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 494 (764)
+++|..- .-...++++|.. ...|..++..|.+.++++
T Consensus 263 l~~~~~~--------ini~k~~~~~~~-----------------------------------~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 263 LELFWSR--------VNIPKVLRAAEQ-----------------------------------AHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp HHHHSTT--------SCHHHHHHHHHT-----------------------------------TTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHH--------hcCcHHHHHHHH-----------------------------------HHHHHHHHHHHHhhchHH
Confidence 4433311 112334555533 334666777788888888
Q ss_pred HHHHHHHh
Q 004269 495 ELIQYFCD 502 (764)
Q Consensus 495 ~a~~~~~~ 502 (764)
.|...+-+
T Consensus 300 ~A~~tm~~ 307 (449)
T 1b89_A 300 NAIITMMN 307 (449)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-15 Score=155.98 Aligned_cols=266 Identities=9% Similarity=-0.090 Sum_probs=148.7
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
...+..+...+.+.|+++.|.++|+++.+.. +.+...|..+...|...|++++|+..|+++.+.. +.+..+|..+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 3445555555556666666666666666553 3345556666666666666666666666655432 223445666666
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCC---------ChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCC--CHhhHHHHHH
Q 004269 167 ACAKLHSMVHANLCLDLMDSRMVGK---------NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFVW 235 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p---------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~ 235 (764)
.|...|++++|+..|+.+.+..+.. ....+..+...+...|++++|.+.++.+.+..+. +..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 6666666666666666655532110 0112223345556666666666666666655444 5666666666
Q ss_pred HhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHH
Q 004269 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQL 315 (764)
Q Consensus 236 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 315 (764)
+|...|++++|...|+++.+ ..|+. ..+|+.+...|...|++++|+..
T Consensus 222 ~~~~~g~~~~A~~~~~~al~--~~p~~------------------------------~~~~~~l~~~~~~~g~~~~A~~~ 269 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALT--VRPED------------------------------YSLWNRLGATLANGDRSEEAVEA 269 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666666665 33332 14666666666666666666666
Q ss_pred HHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHH
Q 004269 316 MLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK-----------PQDSTIATLSVECSKALELDLAEA 384 (764)
Q Consensus 316 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~ 384 (764)
|++..+.. +.+..++..+..++...|++++|...|+.+.+.... .+..++..+..++...|+.+.+..
T Consensus 270 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 270 YTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 66666542 123455666666666666666666666666553211 124556677777777777777666
Q ss_pred HHHH
Q 004269 385 LLDQ 388 (764)
Q Consensus 385 ~~~~ 388 (764)
+...
T Consensus 349 ~~~~ 352 (365)
T 4eqf_A 349 ANLG 352 (365)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 6544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=8.9e-13 Score=143.86 Aligned_cols=398 Identities=8% Similarity=0.020 Sum_probs=244.9
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccC
Q 004269 181 LDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMG 260 (764)
Q Consensus 181 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 260 (764)
|+...+..+ -+..+|..++. +...|+++.|..+|+.+.+.+|.+...|..++..+.+.|+++.|..+|+++.+ ..|
T Consensus 2 le~al~~~P-~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~--~~p 77 (530)
T 2ooe_A 2 AEKKLEENP-YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM--KVL 77 (530)
T ss_dssp HHHHHHHCT-TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--TCC
T ss_pred hhhHhhhCC-CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCC
Confidence 344444322 26667888887 46778888888888888888888888888888888888888888888888877 334
Q ss_pred cchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHH-HccCCHHHHHH----HHHHHHH-CCCCCCc-ccHHH
Q 004269 261 KLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC-GRTQNSGLAEQ----LMLQMQS-LGLQPSS-HTYDG 333 (764)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~----~~~~m~~-~g~~p~~-~~~~~ 333 (764)
+. ..|...+... ...|+++.|.+ +|++... .|..|+. ..|..
T Consensus 78 ~~-------------------------------~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~ 126 (530)
T 2ooe_A 78 HI-------------------------------DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVD 126 (530)
T ss_dssp CH-------------------------------HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred Ch-------------------------------HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 33 3566665422 34566666554 6666554 3544443 34555
Q ss_pred HHHHHHh---------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHH
Q 004269 334 FIRAIVS---------DRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAA 404 (764)
Q Consensus 334 ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~ 404 (764)
.+..... .|+++.|..+|+...+.........+..........|. ..+ ..++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~----------------~~~l~- 188 (530)
T 2ooe_A 127 YINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLA----------------KKMIE- 188 (530)
T ss_dssp HHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHH----------------HHHHH-
T ss_pred HHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHH----------------HHHHH-
Confidence 5544433 56777788888777762111111222222111100010 001 11111
Q ss_pred HHhcCCHHHHHHHHHHHhc---c-------CCCCH--------HHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHH
Q 004269 405 CDTMDKPERAIKIFAKMRQ---K-------LRPDI--------RTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEM 466 (764)
Q Consensus 405 ~~~~~~~~~a~~l~~~m~~---~-------~~p~~--------~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (764)
.+.+++..|..++.++.. + +.|+. ..|...+.
T Consensus 189 -~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~----------------------------- 238 (530)
T 2ooe_A 189 -DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ----------------------------- 238 (530)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH-----------------------------
T ss_pred -HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH-----------------------------
Confidence 123456667766665331 1 23331 11111110
Q ss_pred HHHHCCCCc-cHHHHHHHHHHHHhcCcHHHHHHHHHhc--CCCCChhhHHHHHHHHHH-------cCChH-------HHH
Q 004269 467 DMARNNIQH-SHISMKNLLKALGAEGMIRELIQYFCDS--KTPLGTPTYNTVLHSLVE-------AQESH-------RAM 529 (764)
Q Consensus 467 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~-------~~~~~-------~A~ 529 (764)
.....+... +... ..+.+...|++. ..+.+...|......+.+ .|+.+ +|.
T Consensus 239 ~e~~~~~~~~~~~~------------~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 239 WEKSNPLRTEDQTL------------ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp HHHHCSSCCSCSHH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHcCCccCCcchh------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHH
Confidence 000110000 0000 011223333221 013356678877777765 68877 899
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004269 530 EIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQ-T-MTYTALIKILLDYGDFDEALNLLDLVSL 607 (764)
Q Consensus 530 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 607 (764)
.+|++..+.-.+-+...+..+...+.+.|++++|..+|+.+.+. .|+ . ..|..++..+.+.|++++|.++|++..+
T Consensus 307 ~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 307 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999886322335778888888999999999999999999985 454 3 5899999999999999999999999986
Q ss_pred CCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 004269 608 EGIPHDVLLYNTILKK-ACEKGRIDVIEFIIEQMHQNKVQP-DPSTCHFVFSGYVNCGFHNSAMEALQVLSMR 678 (764)
Q Consensus 608 ~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 678 (764)
.. +.+...|...... +...|+.++|..+|++.++. .| +...|..++..+.+.|+.++|..+|++....
T Consensus 385 ~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 385 DA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp CT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred cc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 42 2233333332222 34689999999999999863 45 4677888888899999999999999987654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-15 Score=155.89 Aligned_cols=265 Identities=10% Similarity=-0.074 Sum_probs=180.6
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
+...+..+...+.+.|++++|+.+|+++.+.. +.+..+|..+...|.+.|++++|+..|+.+.+..+ .+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence 34456677777778888888888888776543 34566777788888888888888888888776532 2566777777
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhH----------HHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccc
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSL----------RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG 270 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 270 (764)
..+...|++++|...++.+.+..+.+...+ ..+...+...|++++|...|+++.+ ..|+...
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~------ 212 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH--QNGDMID------ 212 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH--HSCSSCC------
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH--hCcCccC------
Confidence 778888888888888887776433333333 3346777788888888888888877 3443100
Q ss_pred cccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 004269 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEV 350 (764)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 350 (764)
..+|..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|...
T Consensus 213 ----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 269 (365)
T 4eqf_A 213 ----------------------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEA 269 (365)
T ss_dssp ----------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1477777788888888888888888877653 22456777777778888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--------------CCccHHHHHHHHHhcCCHHHHHH
Q 004269 351 LKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--------------NPKPFSAFLAACDTMDKPERAIK 416 (764)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------------~~~~~~~li~~~~~~~~~~~a~~ 416 (764)
|+.+.+.... +..++..+...|.+.|++++|...|++..... +...|..+..++...|+.+.+..
T Consensus 270 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 270 YTRALEIQPG-FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8887776433 46677777788888888888888887765431 14567777778888888877776
Q ss_pred HHHH
Q 004269 417 IFAK 420 (764)
Q Consensus 417 l~~~ 420 (764)
+..+
T Consensus 349 ~~~~ 352 (365)
T 4eqf_A 349 ANLG 352 (365)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 6554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-15 Score=148.90 Aligned_cols=281 Identities=12% Similarity=0.118 Sum_probs=133.0
Q ss_pred hhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHH
Q 004269 64 CRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASN 143 (764)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 143 (764)
+.|++++|.++++++. ++..|..+..++.+.|++++|.+.|.+ .+|...|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5677999999999883 234888999999999999999999965 2577799999999999999999999
Q ss_pred HHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcC
Q 004269 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY 223 (764)
Q Consensus 144 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 223 (764)
+++...+. .++..+.+.|+.+|.+.|+++++.++++ .|+..+|..+...|...|.++.|...|..+
T Consensus 83 yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 83 YLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 88766542 3556789999999999999999988884 377789999999999999999999999976
Q ss_pred CCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHH
Q 004269 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303 (764)
Q Consensus 224 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 303 (764)
..|..++.++.+.|++++|.+.+.++. +. .+|..++.+|
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~-------------------------------~~Wk~v~~aC 187 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKAN------ST-------------------------------RTWKEVCFAC 187 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHHT------CH-------------------------------HHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHcC------Cc-------------------------------hhHHHHHHHH
Confidence 589999999999999999999999882 11 5999999999
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHH
Q 004269 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKA--LELDL 381 (764)
Q Consensus 304 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~ 381 (764)
...|+++.|......+. +.|+. ...++..|.+.|.+++|..+++...... .-....++-|.-+|++- +++.+
T Consensus 188 v~~~ef~lA~~~~l~L~---~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~e 261 (449)
T 1b89_A 188 VDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMRE 261 (449)
T ss_dssp HHTTCHHHHHHTTTTTT---TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCcHHHHHHHHHHHH---hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999966555422 23333 5578889999999999999999988765 34567777777777765 44555
Q ss_pred HHHHHHHHhhCC-------CCccHHHHHHHHHhcCCHHHHHHH
Q 004269 382 AEALLDQISRCT-------NPKPFSAFLAACDTMDKPERAIKI 417 (764)
Q Consensus 382 a~~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~l 417 (764)
..+.|..-...+ +...|..++..|...++++.|...
T Consensus 262 hl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 262 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 555544221111 678899999999999999988764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-14 Score=147.85 Aligned_cols=203 Identities=6% Similarity=-0.127 Sum_probs=128.7
Q ss_pred hhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHH
Q 004269 48 EESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLL 127 (764)
Q Consensus 48 p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 127 (764)
|......+......+...|++++|+.+|+++.... +.+...+..+..++...|+++.|.+.++++.+.. +.+...+..
T Consensus 17 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 94 (327)
T 3cv0_A 17 PYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAA 94 (327)
T ss_dssp GGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHH
Confidence 33344455566777888888888888888887765 4466677777888888888888888888888764 446777888
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH--------------HH-HHhccCCHHHHHHHHHHHhhcCCCCC
Q 004269 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF--------------LG-ACAKLHSMVHANLCLDLMDSRMVGKN 192 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~ 192 (764)
+...|...|++++|...|+++.+..+ .+...+..+ .. .+...|++++|...++.+.+.... +
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 171 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQP--QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-D 171 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTST--TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-C
Confidence 88888888888888888888765421 222233322 11 245556666666666665554322 4
Q ss_pred hhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 193 EVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 193 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
..++..+...+...|++++|...++.+.+..+.+..++..+..++...|++++|...|+++.+
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555556666666655555555555555555555555555555555555555554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-14 Score=145.84 Aligned_cols=265 Identities=6% Similarity=-0.129 Sum_probs=177.8
Q ss_pred ChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHH
Q 004269 86 GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165 (764)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 165 (764)
+...+..+...+...|+++.|..+++++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHH
Confidence 44567777888888999999999999998874 4577788888999999999999999999987653 34566888889
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHH--------------HH-HHHhhcChhHHHHHHHHHHhcCCCCHhhH
Q 004269 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL--------------LK-LAVWQKNLSAVHEIWEDYIKHYSLSIFSL 230 (764)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 230 (764)
..+...|++++|...|+.+...... +...+..+ .. .+...|++++|.+.++.+.+..+.+..++
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 175 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLH 175 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Confidence 9999999999999999998875322 22222222 11 25566677777777777766666666777
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHH
Q 004269 231 RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSG 310 (764)
Q Consensus 231 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 310 (764)
..+...|...|++++|...++++.+ ..|+. ..+|..+...+...|+++
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~------------------------------~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVE--LRPDD------------------------------AQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH--hCCCc------------------------------HHHHHHHHHHHHHcCCHH
Confidence 7777777777777777777777665 23332 136666677777777777
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCH
Q 004269 311 LAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKP-----------QDSTIATLSVECSKALEL 379 (764)
Q Consensus 311 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~ 379 (764)
+|...|++..+.. +.+..++..+...+...|++++|...++.+.+..... +..++..+..++.+.|+.
T Consensus 224 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 224 EALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 7777777766542 1234456666666666677777776666665543221 233444455555555555
Q ss_pred HHHHHHHH
Q 004269 380 DLAEALLD 387 (764)
Q Consensus 380 ~~a~~~~~ 387 (764)
++|..+++
T Consensus 303 ~~A~~~~~ 310 (327)
T 3cv0_A 303 DLVELTYA 310 (327)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 55554443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-14 Score=140.32 Aligned_cols=253 Identities=11% Similarity=0.011 Sum_probs=172.6
Q ss_pred HHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHH
Q 004269 14 ADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHI 93 (764)
Q Consensus 14 ~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (764)
+......|+++.|+ ..++ ......|++.......+.+.|...|+++.|+..++.. .+|+..++..+
T Consensus 6 ~~~~~~~g~y~~ai-~~~~---------~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~l 71 (291)
T 3mkr_A 6 VKNAFYIGSYQQCI-NEAQ---------RVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMF 71 (291)
T ss_dssp HHHHHHTTCHHHHH-HHHH---------HSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHH---------hcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHH
Confidence 45566778888888 3332 2344556654444444567788888888888766442 24566677777
Q ss_pred HHHhhCCCChhHHHHHHHHHHHcCccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC
Q 004269 94 LNYCARSPDPLFVMETWRMMEEKEIGL-NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172 (764)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 172 (764)
...+...++.+.|.+.++++...+..| +...+..+...|...|++++|++.+++ +.+...+..+...|.+.|
T Consensus 72 a~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g 144 (291)
T 3mkr_A 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLD 144 (291)
T ss_dssp HHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCC
Confidence 788888888888888888887766433 556666777788888888888888875 346667888888888888
Q ss_pred CHHHHHHHHHHHhhcCCCCChhhHHHH----HHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHH
Q 004269 173 SMVHANLCLDLMDSRMVGKNEVTYTEL----LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~l----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 248 (764)
++++|.+.|+.+.+.. |+.. ...+ +..+...|++++|..+|+++.+..+.+...++.+..++.+.|++++|..
T Consensus 145 ~~~~A~~~l~~~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 145 RLDLARKELKKMQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp CHHHHHHHHHHHHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887753 4432 1222 2223344677777777777777777777777777777777777777777
Q ss_pred HHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHH-HHHHHHHHHHC
Q 004269 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL-AEQLMLQMQSL 322 (764)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~ 322 (764)
.|+++.+ ..|+. ..++..++..+...|+.++ +.++++++.+.
T Consensus 222 ~l~~al~--~~p~~------------------------------~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 222 VLQEALD--KDSGH------------------------------PETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH--hCCCC------------------------------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 7777776 44443 1466677777777777654 45677776653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.5e-14 Score=139.56 Aligned_cols=256 Identities=7% Similarity=-0.051 Sum_probs=160.7
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
++.....|+++.|+..++................+.+++...|+++.|+..++. . -+|+..++..+...+...|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 566667788888888877765543111123445566777777887777765543 1 355666777777777777888
Q ss_pred HHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHH
Q 004269 139 EEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 139 ~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
++|++.++++... +..| +...+..+...+.+.|++++|++.|+. ..+..++..+...+.+.|++++|.+.++
T Consensus 82 ~~A~~~l~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 82 DAIVAELDREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888777542 3223 444555666777777888888887776 3456667777777777777777777777
Q ss_pred HHHhcCCCCHhh--HHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhh
Q 004269 218 DYIKHYSLSIFS--LRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295 (764)
Q Consensus 218 ~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (764)
.+.+..+.+... ...++..+...|++++|..+|+++.+. .|+. ...
T Consensus 155 ~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~------------------------------~~~ 202 (291)
T 3mkr_A 155 KMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPT------------------------------LLL 202 (291)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCC------------------------------HHH
T ss_pred HHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCc------------------------------HHH
Confidence 776653333211 122333444456777777777777663 3433 146
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhH-HHHHHHHHHHCC
Q 004269 296 FSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRN-GMEVLKIMQQNN 358 (764)
Q Consensus 296 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~ 358 (764)
|+.+..++.+.|++++|...|++..+.. +-+..++..++..+...|+..+ +.++++.+.+..
T Consensus 203 ~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 203 LNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 6777777777777777777777766542 1244566666666666666654 456666666543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-12 Score=137.55 Aligned_cols=126 Identities=9% Similarity=-0.087 Sum_probs=70.4
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhhCChhHHHHHHHHHHHCCCCCCHHHHH
Q 004269 507 LGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAA--TYNIMID-CCSIIRCFKSASALVSMMVRDGFYPQTMTYT 583 (764)
Q Consensus 507 ~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~-~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~ 583 (764)
.+...+..+...|...|++++|+..|++..+....|... .+..+.. .....|+.++|...|.+..+. .|+.....
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~ 409 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE 409 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH
Confidence 345577888888888999999999998888754332221 1222211 234568888888888888774 34433222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004269 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 584 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 644 (764)
. ..+.+.+++++..... +.++.+|..|...|...|++++|++.|++.++.+
T Consensus 410 ~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 410 K---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp H---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred H---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2 2233445555554432 4466778888888888888888888888887643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.3e-12 Score=133.84 Aligned_cols=288 Identities=9% Similarity=-0.088 Sum_probs=165.4
Q ss_pred CChhcHHHHHHHhhCCCChhHHHHHHHHHHHc-----C---ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc---C
Q 004269 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEK-----E---IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY---G 153 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~ 153 (764)
.....|+.+...+...|+.++|++.|++..+. + .+....+|+.+..+|...|++++|...+++..+.. .
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34456777777777788888888888776542 1 12234577777888888888888888877664311 0
Q ss_pred --CCC-ChhhhHHHHHHHhc--cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH---HhhcChhHHHHHHHHHHhcCCC
Q 004269 154 --IYP-ILPVYNSFLGACAK--LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA---VWQKNLSAVHEIWEDYIKHYSL 225 (764)
Q Consensus 154 --~~~-~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~ 225 (764)
..+ ...++..+..++.. .+++++|+..|+...+..+. +...+..+..++ ...++.++|.+.+++..+..+.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 111 12344444444443 34677888888777764322 233333333332 3345566777777777666666
Q ss_pred CHhhHHHHHHHhhcc----CCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHH
Q 004269 226 SIFSLRKFVWSFTRL----RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIH 301 (764)
Q Consensus 226 ~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 301 (764)
+..++..+...+... |+.++|.+.+++..+ ..|+. ..++..+..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~--~~~~~------------------------------~~~~~~lg~ 255 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE--KAPGV------------------------------TDVLRSAAK 255 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHH--HCSSC------------------------------HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--hCccH------------------------------HHHHHHHHH
Confidence 666666666555443 455667777777665 34433 146777777
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004269 302 ACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELD 380 (764)
Q Consensus 302 ~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 380 (764)
.|...|++++|+..|++..+. .|+. .++..+...+...+. ....... ..........+..+
T Consensus 256 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~---------~~~~~~~-------~~~~~~~~~~~~~~ 317 (472)
T 4g1t_A 256 FYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVF---------QVMNLRE-------NGMYGKRKLLELIG 317 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHH---------HHHHC-------------CHHHHHHHHH
T ss_pred HHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHH---------HhhhHHH-------HHHHHHHHHHhhHH
Confidence 777777777777777777664 3443 333333333321110 0000000 00000111122356
Q ss_pred HHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 381 LAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 381 ~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
.|...|+...... +..+|..+...|...|++++|+..|++..+
T Consensus 318 ~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 318 HAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 6777776665432 677788888888888888888888887765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-12 Score=128.76 Aligned_cols=247 Identities=11% Similarity=-0.107 Sum_probs=123.7
Q ss_pred CCCChhHHHHHHHHHHHcCc---cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH
Q 004269 99 RSPDPLFVMETWRMMEEKEI---GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175 (764)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 175 (764)
..++++.|.+.++++.+... +.+...+..+...|...|++++|...|++..+.. +.+...|..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence 44556666666666655421 1134455555666666666666666666554432 223445555555555555555
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
+|...|+...+ ..+.+..++..+..+|...|++++|...|+++.+
T Consensus 95 ~A~~~~~~al~-----------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 95 AAYEAFDSVLE-----------------------------------LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHH-----------------------------------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-----------------------------------cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555554 3333444444555555555555555555555554
Q ss_pred hhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 004269 256 LAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI 335 (764)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 335 (764)
..|+. ..+...+..+...|++++|...+++..... |+......+.
T Consensus 140 --~~~~~-------------------------------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ 184 (275)
T 1xnf_A 140 --DDPND-------------------------------PFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWNIV 184 (275)
T ss_dssp --HCTTC-------------------------------HHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHHHH
T ss_pred --hCCCC-------------------------------hHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CcchHHHHHH
Confidence 23332 111222222334455566666665554431 2222222344
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCHH
Q 004269 336 RAIVSDRGLRNGMEVLKIMQQNNLKP---QDSTIATLSVECSKALELDLAEALLDQISRCTNPKPFSAFLAACDTMDKPE 412 (764)
Q Consensus 336 ~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 412 (764)
..+...++.++|...+....+..... +..++..+...|.+.|++++|...|+..... ++..+.....++...|+++
T Consensus 185 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~l~~~~ 263 (275)
T 1xnf_A 185 EFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN-NVHNFVEHRYALLELSLLG 263 (275)
T ss_dssp HHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHH
Confidence 44445555555555555554432110 1344556666666666666666666666655 4444555555566666666
Q ss_pred HHHHHH
Q 004269 413 RAIKIF 418 (764)
Q Consensus 413 ~a~~l~ 418 (764)
+|+..+
T Consensus 264 ~a~~~~ 269 (275)
T 1xnf_A 264 QDQDDL 269 (275)
T ss_dssp HC----
T ss_pred hhHHHH
Confidence 665544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-12 Score=121.33 Aligned_cols=198 Identities=8% Similarity=-0.116 Sum_probs=129.1
Q ss_pred ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHH
Q 004269 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236 (764)
Q Consensus 157 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 236 (764)
+...+..+...+.+.|++++|+..|+...+..+. +...+..+...+...|++++|...++..++..|.+...+..+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3444555555555555555555555555543221 344455555555555555555555555555555555666666666
Q ss_pred hhcc-----------CCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHc
Q 004269 237 FTRL-----------RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGR 305 (764)
Q Consensus 237 ~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 305 (764)
+... |++++|...|++..+ ..|+. ...|..+...+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~------------------------------~~~~~~lg~~~~~ 130 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRY------------------------------APLHLQRGLVYAL 130 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCccc------------------------------HHHHHHHHHHHHH
Confidence 6666 999999999999988 55654 2588889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004269 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEAL 385 (764)
Q Consensus 306 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 385 (764)
.|++++|+..|++..+.. .+...+..+..++...|++++|...|+...+..+. +...+..+...+.+.|++++|...
T Consensus 131 ~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~ 207 (217)
T 2pl2_A 131 LGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARA 207 (217)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC----------
T ss_pred cCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999999998876 57778888888999999999999999999887544 566677777888888888888887
Q ss_pred HHHHh
Q 004269 386 LDQIS 390 (764)
Q Consensus 386 ~~~~~ 390 (764)
|++..
T Consensus 208 ~~~~~ 212 (217)
T 2pl2_A 208 AALEH 212 (217)
T ss_dssp -----
T ss_pred HHHHh
Confidence 77654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.3e-12 Score=122.69 Aligned_cols=224 Identities=11% Similarity=-0.087 Sum_probs=116.1
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCC-CCC----hhhhHH
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGI-YPI----LPVYNS 163 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~----~~~~~~ 163 (764)
.+..+...+...|+++.|.+++++..+.. .+...+..+...|...|++++|...|++..+..+- .++ ...|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444445555555555555555555544 44445555555555555555555555554332100 001 234555
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCH
Q 004269 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 243 (764)
+...+...|++++|...|+...+. .|+. ..+...|++++|...++.+.+..+.+...+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 555555555555555555555543 2221 2234445555555555555554444555555666666666666
Q ss_pred HHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004269 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 244 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 323 (764)
++|...|+++.+ ..|+. ...|..+...+...|++++|+..|++..+..
T Consensus 156 ~~A~~~~~~a~~--~~~~~------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 156 PNAVKAYTEMIK--RAPED------------------------------ARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh--cCccc------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 666666666555 22322 1355556666666666666666666665542
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 324 LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 324 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
+.+..++..+...+...|++++|...++...+
T Consensus 204 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 204 -PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11244455555556666666666666655554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=8e-12 Score=121.96 Aligned_cols=226 Identities=8% Similarity=-0.089 Sum_probs=192.8
Q ss_pred hhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCcc--cc----HHHH
Q 004269 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIG--LN----NKCY 125 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~----~~~~ 125 (764)
...+..+...+...|++++|+..|++..... .+...+..+..++...|+++.|.+.+++..+.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3455666778899999999999999998877 77888999999999999999999999999886411 11 5788
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 004269 126 LLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW 205 (764)
Q Consensus 126 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 205 (764)
..+...|...|++++|...|++..+. .|+ ...+.+.|++++|...++.+....+ .+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE---HRT-------ADILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CCC-------HHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc---Cch-------hHHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHH
Confidence 99999999999999999999999764 344 2456677899999999999988532 255678888889999
Q ss_pred hcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCc
Q 004269 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (764)
.|++++|...++...+..+.+..++..+..+|...|++++|...|+...+ ..|+.
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~----------------------- 206 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNF----------------------- 206 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC-----------------------
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCHHH-----------------------
Confidence 99999999999999998888999999999999999999999999999988 44543
Q ss_pred cccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 286 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
..+|..+...+...|++++|...|++..+.
T Consensus 207 -------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 207 -------VRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 258889999999999999999999998764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-11 Score=119.44 Aligned_cols=210 Identities=12% Similarity=0.034 Sum_probs=181.0
Q ss_pred chhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHH
Q 004269 47 NEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYL 126 (764)
Q Consensus 47 ~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 126 (764)
.|+.....+..+...+...|++++|+..|+++.... +.+...+..+..++...|+++.|.+.++++.+.. +.+...+.
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 109 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLN 109 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHH
Confidence 455546667777888999999999999999998765 4567788889999999999999999999999875 45778899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 004269 127 LMMQALCKGGYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW 205 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 205 (764)
.+...|...|++++|.++|+++.+ .+..| +...+..+...+.+.|++++|...|+...+... .+..++..+...+..
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHH
Confidence 999999999999999999999975 22334 456788899999999999999999999988643 357788899999999
Q ss_pred hcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
.|++++|...++.+.+..+.+...+..+...+...|+.++|.+.++.+.+ ..|+.
T Consensus 188 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~ 242 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGS 242 (252)
T ss_dssp TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTS
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCC
Confidence 99999999999999998888899999999999999999999999999988 44544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-12 Score=120.09 Aligned_cols=196 Identities=11% Similarity=-0.010 Sum_probs=161.3
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 132 (764)
..+..+...+...|++++|+..|+...+.. |.++..+..+..++.+.|++++|...+++..+.+ +.+...+..+...|
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345556777889999999999999998876 5667788889999999999999999999999885 55778899999999
Q ss_pred Hcc-----------CCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 004269 133 CKG-----------GYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201 (764)
Q Consensus 133 ~~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 201 (764)
... |++++|+..|++..+.. +.+...|..+..++...|++++|+..|+...+.. .+...+..+..
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 999 99999999999997653 3356688899999999999999999999999887 68889999999
Q ss_pred HHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004269 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 254 (764)
++...|++++|...++...+..|.+..++..+..++...|++++|...|++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999889999999999999999999999999988764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=6.1e-12 Score=124.24 Aligned_cols=250 Identities=9% Similarity=-0.144 Sum_probs=192.4
Q ss_pred hhCCcchHHHHHHhccccCC---CCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHH
Q 004269 64 CRGERSRASHLLLNLGHAHH---SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEE 140 (764)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 140 (764)
..|++++|+..|+.+..... +.+...+..+..++...|+++.|.+.|+++.+.+ +.+...|..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45788999999999987632 2245678888999999999999999999999875 4578899999999999999999
Q ss_pred HHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHH
Q 004269 141 ASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 141 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 220 (764)
|...|++..+.. +.+...+..+...|.+.|++++|...|+.+.+. .|+.......+..+...|++++|...+....
T Consensus 96 A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999997643 345678999999999999999999999999885 4555555556666677899999999998888
Q ss_pred hcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHH
Q 004269 221 KHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVI 300 (764)
Q Consensus 221 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 300 (764)
...+++...+. ++..+...++.+.|...+....+....... .....|..+.
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------------~~~~~~~~la 222 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAE----------------------------HLSETNFYLG 222 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHH----------------------------HHHHHHHHHH
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccc----------------------------cccHHHHHHH
Confidence 87777766655 677777888889999998887653221100 0015788889
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 004269 301 HACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVL 351 (764)
Q Consensus 301 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 351 (764)
..+...|++++|...|++.... .|+. +.....++...|++++|.+.+
T Consensus 223 ~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 223 KYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999875 3433 223344566677777776655
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.2e-11 Score=126.28 Aligned_cols=223 Identities=9% Similarity=-0.007 Sum_probs=135.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR---GLRNGMEVLKIMQQNNLKPQDSTIATLSV 371 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 371 (764)
.+..|...|...+.++++........+.-...+...+..+-..+...| +.++|...|+...+.|.. +...+..|..
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~ 221 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVAR 221 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHH
Confidence 566667777777755544444333322222234446777777777778 788888888888887754 4444455666
Q ss_pred HHHhc----CCHHHHHHHHHHHhhCCCCccHHHHHHH-H--HhcCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCCC
Q 004269 372 ECSKA----LELDLAEALLDQISRCTNPKPFSAFLAA-C--DTMDKPERAIKIFAKMRQ-KLRPDIRTYELLFSLFGNVN 443 (764)
Q Consensus 372 ~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~l~~~m~~-~~~p~~~t~~~ll~~~~~~~ 443 (764)
.|... ++.++|...|+... .+++..+..+-.. | ...+++++|+..|++..+ | +...
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A------------ 285 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRA------------ 285 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHH------------
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHH------------
Confidence 66554 68888888888887 5477777777776 4 467888888888887765 4 1111
Q ss_pred CchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCcHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 004269 444 APYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGA----EGMIRELIQYFCDSKTPLGTPTYNTVLHSL 519 (764)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~li~~~ 519 (764)
+..|...|.. ..++++|...|++.. ..+...+..+...|
T Consensus 286 ------------------------------------~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 286 ------------------------------------ELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIY 328 (452)
T ss_dssp ------------------------------------HHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 1222233331 127777888777765 55556666666555
Q ss_pred HH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCChhHHHHHHHHHHHCC
Q 004269 520 VE----AQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI----IRCFKSASALVSMMVRDG 574 (764)
Q Consensus 520 ~~----~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g 574 (764)
.. ..+.++|...|++..+.|. |+ ....|-..|.. ..+.++|..+|+...+.|
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 54 2367777777777766653 22 22233333332 235666666666666655
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-11 Score=113.74 Aligned_cols=205 Identities=12% Similarity=-0.046 Sum_probs=176.1
Q ss_pred hhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004269 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 131 (764)
...+..+...+...|++++|+..|+.+.... +.+...+..+..++...|+++.|.++++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 4556667788999999999999999998765 4567788889999999999999999999999875 4577889999999
Q ss_pred HHcc-CCHHHHHHHHHHHhhhcCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcCh
Q 004269 132 LCKG-GYLEEASNLIYFLGERYGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209 (764)
Q Consensus 132 ~~~~-g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 209 (764)
|... |++++|...|+++.+ .+..| +...+..+...+...|++++|...|+.+.+..+. +...+..+...+...|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 9999 999999999999976 32233 3567888999999999999999999999886432 577888899999999999
Q ss_pred hHHHHHHHHHHhcCC-CCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 210 SAVHEIWEDYIKHYS-LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
++|...++.+.+..+ .+...+..+...+...|+.+.|..+++.+.+ ..|+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~ 215 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYS 215 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCC
Confidence 999999999998777 8888899999999999999999999999886 44554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-11 Score=118.20 Aligned_cols=234 Identities=9% Similarity=-0.036 Sum_probs=115.2
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh--hhhHHHHHH
Q 004269 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL--PVYNSFLGA 167 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~~li~~ 167 (764)
+......+...|+++.|...+++..+.. +.+...+..+...|...|++++|+..|++..+ .+..|+. ..|..+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHH
Confidence 3344444555555555555555555442 22333455555555555555555555555543 1111111 124555555
Q ss_pred HhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHH
Q 004269 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (764)
+...|++++|+..|+...+..+. +..++..+...+...|++++|...++...+..+.+..++..+...+...+++++|.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555543221 33455555555555555555555555555554455555555552222233666666
Q ss_pred HHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCC---HHHHHHHHHHHHHCC-
Q 004269 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN---SGLAEQLMLQMQSLG- 323 (764)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g- 323 (764)
+.|+++.+ ..|+. ...|..+...+...++ +++|...|++..+..
T Consensus 163 ~~~~~a~~--~~p~~------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 163 SSFVKVLE--LKPNI------------------------------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp HHHHHHHH--HSTTC------------------------------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred HHHHHHHH--hCccc------------------------------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 66666555 33332 1244445555555555 555555555554321
Q ss_pred CCCCc------ccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004269 324 LQPSS------HTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 324 ~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 358 (764)
-.|+. .+|..+...+...|++++|...++.+.+..
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 11221 244445555555666666666666665543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-11 Score=113.31 Aligned_cols=201 Identities=7% Similarity=-0.130 Sum_probs=129.7
Q ss_pred ChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHH
Q 004269 86 GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165 (764)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 165 (764)
++..+..+...+...|+++.|.+.++++.+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHH
Confidence 34456666677777777777777777777653 3456667777777777777777777777775432 23455667777
Q ss_pred HHHhcc-CCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCH
Q 004269 166 GACAKL-HSMVHANLCLDLMDSRMVGKN-EVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243 (764)
Q Consensus 166 ~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 243 (764)
..+... |++++|...++.+.+.+..|+ ...+..+...+...|++++|...++.+.+..+.+...+..+..++...|++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 777777 777777777777766222222 445666666666677777777777766666556666666666677777777
Q ss_pred HHHHHHHHHHHHhhccC-cchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 244 KSAYETLQHMVALAMMG-KLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 244 ~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
++|...++.+.+. .| +. ...+..+...+...|+.+.|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSR--VEVLQ------------------------------ADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHH--HCSCC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCC------------------------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777777666652 22 21 13455555666666666666666666654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.2e-11 Score=116.48 Aligned_cols=201 Identities=11% Similarity=-0.047 Sum_probs=123.5
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
...+..+...+...|+++.|.+.++++.+.. +.+...+..+...|...|++++|.+.|+++.+.. +.+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHH
Confidence 3445666666777777777777777777653 3456667777777777777777777777765432 234556666777
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHH
Q 004269 167 ACAKLHSMVHANLCLDLMDSRMVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 245 (764)
.|...|++++|.+.|+.+...+..| +...+..+...+...|++++|.+.++...+..+.+..++..+..+|...|++++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777766622233 334555555566666666666666666665555555566666666666666666
Q ss_pred HHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 246 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
|...|+.+.+ ..|+. ...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~--~~~~~------------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQ--GGGQN------------------------------ARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHT--TSCCC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCcCc------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666666554 22222 134555555556666666666666665543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=6.6e-11 Score=121.35 Aligned_cols=233 Identities=10% Similarity=-0.050 Sum_probs=187.5
Q ss_pred hcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC-HHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY-LEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
..|..+..++...|+++.|++.+++.++.. +-+...|+.+..+|...|+ +++|+..|++..+.+ +-+...|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 457777778888899999999999999875 4567788889999999996 999999999987654 345678899999
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhc-cCCHHH
Q 004269 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR-LRDLKS 245 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~ 245 (764)
++.+.|++++|+..|+.+.+..+. +..+|..+..++...|++++|...++.+++..+.+..+|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999999886543 677888888899999999999999999999888899999999999988 666577
Q ss_pred H-----HHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccC--CHHHHHHHHHH
Q 004269 246 A-----YETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ--NSGLAEQLMLQ 318 (764)
Q Consensus 246 A-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~ 318 (764)
| +..|++..+ +.|+. ...|+.+...+...| ++++|++.+.+
T Consensus 254 A~~~~el~~~~~Al~--l~P~~------------------------------~~a~~~l~~ll~~~g~~~~~~a~~~~~~ 301 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK--LVPHN------------------------------ESAWNYLKGILQDRGLSKYPNLLNQLLD 301 (382)
T ss_dssp HHHHHHHHHHHHHHH--HSTTC------------------------------HHHHHHHHHHHTTTCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HCCCC------------------------------HHHHHHHHHHHHccCccchHHHHHHHHH
Confidence 7 588888887 56655 258888888888888 68899999988
Q ss_pred HHHCCCCCCcccHHHHHHHHHhcC---------ChhHHHHHHHHH-HHCC
Q 004269 319 MQSLGLQPSSHTYDGFIRAIVSDR---------GLRNGMEVLKIM-QQNN 358 (764)
Q Consensus 319 m~~~g~~p~~~~~~~ll~~~~~~~---------~~~~a~~~~~~~-~~~~ 358 (764)
+ +. ...+...+..+...+.+.| .+++|..+++.+ .+.+
T Consensus 302 ~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 302 L-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp H-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred h-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC
Confidence 7 32 2334556777777777763 258888888888 5543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.7e-11 Score=125.44 Aligned_cols=311 Identities=11% Similarity=0.026 Sum_probs=197.8
Q ss_pred HHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCCh---hHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004269 58 QIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDP---LFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 58 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 134 (764)
+...+.+.|++++|+++|+...+.+ ++..+..+...+...|++ +.|.+.|++..+. ++..+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4556788999999999999998776 333444555566667777 8999999988855 55556666664555
Q ss_pred cC-----CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHH---HHHHHHHHhhcCCCCChhhHHHHHHHHHhh
Q 004269 135 GG-----YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVH---ANLCLDLMDSRMVGKNEVTYTELLKLAVWQ 206 (764)
Q Consensus 135 ~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (764)
.| ++++|..+|++..+. + +...+..|...|...+..+. +.+.+......| +...+..+...|...
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFAN-G---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHT-T---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 44 789999999998753 2 23377778888877655443 444454444443 455667777778887
Q ss_pred cChhHHHHHHHHHHhc-CCCCHhhHHHHHHHhhccC---CHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCcc
Q 004269 207 KNLSAVHEIWEDYIKH-YSLSIFSLRKFVWSFTRLR---DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (764)
+.++++......+.+. ...++.++..|..+|...| +.++|++.|++..+.|....
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a--------------------- 213 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA--------------------- 213 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH---------------------
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH---------------------
Confidence 8666555554444432 3344458899999999999 99999999999988553322
Q ss_pred CCccccchhhhhhHHHHHHHHHcc----CCHHHHHHHHHHHHHCCCCCCcccHHHHHHH-H--HhcCChhHHHHHHHHHH
Q 004269 283 LNALPVMKVLRWSFSDVIHACGRT----QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA-I--VSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 283 ~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~ 355 (764)
..+..|...|... +++++|+..|++.. .| +...+..+-.. + ...+++++|...|+...
T Consensus 214 -----------~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 214 -----------QRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp -----------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 2446666777554 78999999999987 33 44555555555 3 46789999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHhhCCCCccHHHHHHHHHh----cCCHHHHHHHHHHHhc
Q 004269 356 QNNLKPQDSTIATLSVECSKAL-----ELDLAEALLDQISRCTNPKPFSAFLAACDT----MDKPERAIKIFAKMRQ 423 (764)
Q Consensus 356 ~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~l~~~m~~ 423 (764)
+.| +......|...|. .| +.++|...|.... .+++..+..|-..|.. ..++++|...|++..+
T Consensus 279 ~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 279 AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 877 5566667777776 45 8888888888877 5566666666666655 3367777777766655
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-11 Score=118.57 Aligned_cols=206 Identities=9% Similarity=-0.050 Sum_probs=162.9
Q ss_pred hhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHH
Q 004269 50 SISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMM 129 (764)
Q Consensus 50 ~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 129 (764)
.....+..+...+...|++++|+..|+++.... +.+...+..+..++...|+++.|.+.++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 344455566777888999999999999998765 4567788888999999999999999999999875 45778899999
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcCh
Q 004269 130 QALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209 (764)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 209 (764)
..|...|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|...++.+.+... .+...+..+...+...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999987653 34567888999999999999999999999987643 3677888899999999999
Q ss_pred hHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 210 SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
++|...++.+.+..+.+..++..+..+|...|++++|...|+++.+ ..|+.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~ 226 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID--IQPDH 226 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcch
Confidence 9999999999988888899999999999999999999999999988 45544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.5e-11 Score=116.57 Aligned_cols=244 Identities=9% Similarity=-0.063 Sum_probs=193.5
Q ss_pred HHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCcccc--HHHHHHHHHHH
Q 004269 55 TQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLN--NKCYLLMMQAL 132 (764)
Q Consensus 55 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~ 132 (764)
+......+...|++++|+..|+...+.. +.+...+..+..++...|+++.|.+.+++..+.+-.++ ...|..+...|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344666889999999999999998876 44566888889999999999999999999998432222 33488999999
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHH
Q 004269 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 212 (764)
...|++++|+..|++..+.. +.+...|..+...|...|++++|+..|+...+.. +.+..++..+...+...+++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997654 3355689999999999999999999999988762 22455666666345556699999
Q ss_pred HHHHHHHHhcCCCCHhhHHHHHHHhhccCC---HHHHHHHHHHHHHhhcc-CcchhcccccccccccccCCCccCCcccc
Q 004269 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLRD---LKSAYETLQHMVALAMM-GKLYINRTSEGRLRSSRLDIPIPLNALPV 288 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (764)
.+.++.+.+..+.+...+..+..++...|+ .+.|...|++..+.... |+..
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------------------- 216 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY------------------------- 216 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-------------------------
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-------------------------
Confidence 999999999888888999999999998888 88899999998874211 2210
Q ss_pred chhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc
Q 004269 289 MKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH 329 (764)
Q Consensus 289 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 329 (764)
......+|..+...|...|++++|.+.|++..+. .|+..
T Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 255 (272)
T 3u4t_A 217 KDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNK 255 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHH
Confidence 0001248888999999999999999999999885 45543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=8.4e-11 Score=120.58 Aligned_cols=233 Identities=14% Similarity=0.068 Sum_probs=191.0
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC-HHHHHHHHHHHhhcCCCCChhhHHHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS-MVHANLCLDLMDSRMVGKNEVTYTEL 199 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~l 199 (764)
+...|..+...+...|++++|+..|++..+.+ +-+...|+.+..++...|+ +++|+..|+......+. +...|..+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 34578888889999999999999999998654 3456789999999999996 99999999999987544 67789999
Q ss_pred HHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCC
Q 004269 200 LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDI 279 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (764)
-.++...|++++|...++.+++..+.+..+|..+..++...|++++|+..|+++.+ +.|+.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~----------------- 233 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRN----------------- 233 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTC-----------------
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCC-----------------
Confidence 99999999999999999999999999999999999999999999999999999998 55554
Q ss_pred CccCCccccchhhhhhHHHHHHHHHc-cCCHHHH-----HHHHHHHHHCCCCCC-cccHHHHHHHHHhcC--ChhHHHHH
Q 004269 280 PIPLNALPVMKVLRWSFSDVIHACGR-TQNSGLA-----EQLMLQMQSLGLQPS-SHTYDGFIRAIVSDR--GLRNGMEV 350 (764)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a-----~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~--~~~~a~~~ 350 (764)
...|+.+..++.. .|..++| +..|++.... .|+ ...|..+...+...| ++++|.+.
T Consensus 234 -------------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~ 298 (382)
T 2h6f_A 234 -------------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQ 298 (382)
T ss_dssp -------------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred -------------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHH
Confidence 2589999999998 6665777 5888888875 444 456777777777777 68889998
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-hhC
Q 004269 351 LKIMQQNNLKPQDSTIATLSVECSKAL---------ELDLAEALLDQI-SRC 392 (764)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~a~~~~~~~-~~~ 392 (764)
+..+ +... .+...+..+...|.+.| .+++|..+|+.+ .+.
T Consensus 299 ~~~~-~~~p-~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 299 LLDL-QPSH-SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHH-TTTC-CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHh-ccCC-CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 8887 4332 35566778888888764 257888888888 554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-11 Score=128.98 Aligned_cols=277 Identities=10% Similarity=-0.113 Sum_probs=196.2
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccCCCCC----hhcHHHHHHHhhCCCChhHHHHHHHHHHHc----Cccc-cHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLG----ADDFFHILNYCARSPDPLFVMETWRMMEEK----EIGL-NNK 123 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~ 123 (764)
..+......+...|++++|+..|++..... +.+ ...+..+...+...|+++.|...+++..+. +-.| ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 344555677888999999999999988765 223 246778888888999999999999987653 2122 355
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhhhHHHHHHHhccCC--------------------HHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI----LPVYNSFLGACAKLHS--------------------MVHANL 179 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 179 (764)
++..+...|...|++++|...+++..+...-.++ ..++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 7888888999999999999999877543211112 3478888888999999 999998
Q ss_pred HHHHHhhc----CCCC-ChhhHHHHHHHHHhhcChhHHHHHHHHHHhcC--CCC----HhhHHHHHHHhhccCCHHHHHH
Q 004269 180 CLDLMDSR----MVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY--SLS----IFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 180 ~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~ 248 (764)
.++..... +..| ...++..+...+...|++++|...++...+.. .++ ..++..+..+|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88776542 1111 23467777788888999999999998887631 122 2378888888999999999999
Q ss_pred HHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC
Q 004269 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL-QPS 327 (764)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~ 327 (764)
.+++..+........ .....++..+...+...|++++|...|++..+... .++
T Consensus 249 ~~~~al~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 302 (406)
T 3sf4_A 249 YYKKTLLLARQLKDR--------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND 302 (406)
T ss_dssp HHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCcCc--------------------------hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Confidence 998887632221110 00125778888888899999999988888765311 011
Q ss_pred ----cccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 328 ----SHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 328 ----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
..++..+...+...|++++|...+++..+
T Consensus 303 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 303 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33555666667777777777777776654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-11 Score=123.38 Aligned_cols=278 Identities=10% Similarity=-0.123 Sum_probs=189.6
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccCCCCC----hhcHHHHHHHhhCCCChhHHHHHHHHHHHc----Cc-cccHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLG----ADDFFHILNYCARSPDPLFVMETWRMMEEK----EI-GLNNK 123 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~ 123 (764)
..+......+...|++++|+..|+++.... +.+ ...+..+...+...|+++.|.+.+++..+. +. +....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 344455677888999999999999988765 223 356778888899999999999999887653 21 22356
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhhhHHHHHHHhccCC--------------------HHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI----LPVYNSFLGACAKLHS--------------------MVHANL 179 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 179 (764)
++..+...|...|++++|...+++..+...-.++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 7888888999999999999999887543211122 3377888888888899 899988
Q ss_pred HHHHHhhc----CCCC-ChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCC--C----CHhhHHHHHHHhhccCCHHHHHH
Q 004269 180 CLDLMDSR----MVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS--L----SIFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 180 ~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~ 248 (764)
.++..... +..| ...++..+...+...|++++|...++...+..+ + ...++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88776442 1111 233667777788888999999988888875311 1 13377788888888899999988
Q ss_pred HHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC
Q 004269 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ-PS 327 (764)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~ 327 (764)
.+++..+........ .....++..+...+...|++++|...+++....... .+
T Consensus 245 ~~~~al~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 245 YYKKTLLLARQLKDR--------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhcch--------------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 888877632221110 000246777788888888888888888776542100 01
Q ss_pred ----cccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004269 328 ----SHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357 (764)
Q Consensus 328 ----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 357 (764)
..++..+...+...|++++|...+++..+.
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 224445555566666666666666665543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.4e-11 Score=116.26 Aligned_cols=165 Identities=10% Similarity=-0.077 Sum_probs=74.4
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
+..|..+...+...|+++.|..+|+++.+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~ 99 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAGN 99 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHHH
Confidence 3445555555555566666666666655543 3345555555555666666666666666554332 223445555555
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHH
Q 004269 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
.+...|++++|...|+.+.+... .+...+..+...+...|++++|...++.+.+..+.+...+..+..++...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555555554321 13344444444455555555555555554444444444444444445555555555
Q ss_pred HHHHHHHHH
Q 004269 247 YETLQHMVA 255 (764)
Q Consensus 247 ~~~~~~~~~ 255 (764)
...|+++.+
T Consensus 179 ~~~~~~~~~ 187 (243)
T 2q7f_A 179 LSQFAAVTE 187 (243)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-08 Score=110.18 Aligned_cols=471 Identities=9% Similarity=0.035 Sum_probs=249.7
Q ss_pred CcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC---HHHHHH
Q 004269 67 ERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY---LEEASN 143 (764)
Q Consensus 67 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~ 143 (764)
...+.+..|+..+..+ +.|...|..+++.+.+.++++.++.+|+++... .+.+...|...+..-.+.|+ ++.+.+
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455555566665555 578888999999888888899999999998887 46677788888888888888 999999
Q ss_pred HHHHHhhhcCCCCChhhhHHHHHHHhccCCH--------HHHHHHHHHHhhc-CC-CCC-hhhHHHHHHHHH--------
Q 004269 144 LIYFLGERYGIYPILPVYNSFLGACAKLHSM--------VHANLCLDLMDSR-MV-GKN-EVTYTELLKLAV-------- 204 (764)
Q Consensus 144 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~-g~-~p~-~~t~~~ll~~~~-------- 204 (764)
+|++.......+|++..|..-+.-..+.++. +...++|+..... |. .|+ ...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9998875432347777777777655554443 3344677765543 55 554 346666665432
Q ss_pred -hhcChhHHHHHHHHHHhcCCCC--HhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCc
Q 004269 205 -WQKNLSAVHEIWEDYIKHYSLS--IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281 (764)
Q Consensus 205 -~~~~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (764)
..++++.+..+|...+.. |.. ..+|......-...+. ..+.+++.+..
T Consensus 205 eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~~--------------------------- 255 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQ-LTARRHIGELS--------------------------- 255 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHHH---------------------------
T ss_pred HHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCc-chHHHHHHHhh---------------------------
Confidence 234566777777777642 211 1222211111000000 00111111100
Q ss_pred cCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH--CCCC---CCc--------------------ccHHHHHH
Q 004269 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS--LGLQ---PSS--------------------HTYDGFIR 336 (764)
Q Consensus 282 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~---p~~--------------------~~~~~ll~ 336 (764)
.+++.|...+.++.. .++. |.. ..|...+.
T Consensus 256 -------------------------~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~ 310 (679)
T 4e6h_A 256 -------------------------AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIR 310 (679)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHH
Confidence 111222222222111 0000 000 00111110
Q ss_pred HHHhcC--------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHhhCC--CCccHHHHHHHH
Q 004269 337 AIVSDR--------GLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE-ALLDQISRCT--NPKPFSAFLAAC 405 (764)
Q Consensus 337 ~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~--~~~~~~~li~~~ 405 (764)
+.+.. ..+.+..+|+++...... +...+-..+..+...|+.+.|. .+|+...... +...|-.++...
T Consensus 311 -fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~e 388 (679)
T 4e6h_A 311 -WESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQY 388 (679)
T ss_dssp -HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred -HHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 00000 012233444444443222 4444445555555555555554 5555544321 222344455555
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 004269 406 DTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRINAIEMDMARNNIQHSHISMKNLLK 485 (764)
Q Consensus 406 ~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 485 (764)
-+.|++++|..+|+.+...+ |. .+..+ .... |+.
T Consensus 389 e~~~~~e~aR~iyek~l~~l-~~--~~~~~----------------------------------~~~~-p~~-------- 422 (679)
T 4e6h_A 389 ELNTKIPEIETTILSCIDRI-HL--DLAAL----------------------------------MEDD-PTN-------- 422 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHH-HH--HHHHH----------------------------------HHHS-TTC--------
T ss_pred HHhCCHHHHHHHHHHHHHHH-HH--Hhhhh----------------------------------hhcc-Ccc--------
Confidence 55666666666666554300 00 00000 0000 000
Q ss_pred HHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh-hCChhHH
Q 004269 486 ALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTC-GIPPNAATYNIMIDCCSI-IRCFKSA 563 (764)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~-~g~~~~a 563 (764)
+...... .......|...+....+.|+.+.|..+|.+..+. + .+....|......-.+ .++.+.|
T Consensus 423 --------~~~~~~~----~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~A 489 (679)
T 4e6h_A 423 --------ESAINQL----KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTA 489 (679)
T ss_dssp --------HHHHHHH----HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHH
T ss_pred --------hhhhhhh----ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHH
Confidence 0000000 0001225666667667778888888888888775 2 1122333322222223 3558999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004269 564 SALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPH--DVLLYNTILKKACEKGRIDVIEFIIEQMH 641 (764)
Q Consensus 564 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 641 (764)
..+|+...+. ++-+...|...++.....|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+.++.+++.
T Consensus 490 r~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~ 568 (679)
T 4e6h_A 490 CKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF 568 (679)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999888876 44466677788888888899999999999988653222 34578888888888999999999999998
Q ss_pred HCCCCCCHHHHHHHHH
Q 004269 642 QNKVQPDPSTCHFVFS 657 (764)
Q Consensus 642 ~~~~~p~~~~~~~ll~ 657 (764)
+ ..|+......+..
T Consensus 569 ~--~~P~~~~~~~f~~ 582 (679)
T 4e6h_A 569 E--KFPEVNKLEEFTN 582 (679)
T ss_dssp H--HSTTCCHHHHHHH
T ss_pred H--hCCCCcHHHHHHH
Confidence 6 3455544444433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-11 Score=127.06 Aligned_cols=242 Identities=10% Similarity=-0.132 Sum_probs=161.4
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccCCCCCh----hcHHHHHHHhhCCCChhHHHHHHHHHHHc----C-ccccHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGA----DDFFHILNYCARSPDPLFVMETWRMMEEK----E-IGLNNK 123 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~ 123 (764)
..+......+...|++++|+..|+.....+ +.+. ..+..+..++...|+++.|.+.+++..+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 344455667788899999999999988765 2233 45777778888889999999988887764 1 133456
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhc---C-CCCChhhhHHHHHHHhccCC-----------------HHHHHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERY---G-IYPILPVYNSFLGACAKLHS-----------------MVHANLCLD 182 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 182 (764)
.+..+...|...|++++|...|++..+.. + .+....++..+...|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 77888888889999999999888765421 1 11223467778888888888 888888877
Q ss_pred HHhhc----CCC-CChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCC--CC----HhhHHHHHHHhhccCCHHHHHHHHH
Q 004269 183 LMDSR----MVG-KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS--LS----IFSLRKFVWSFTRLRDLKSAYETLQ 251 (764)
Q Consensus 183 ~m~~~----g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~ 251 (764)
+..+. +-. ....++..+...+...|++++|...+++..+..+ ++ ..++..+..+|...|++++|...|+
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 75432 111 1223666677777788888888888877765321 11 2267777777778888888888877
Q ss_pred HHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 252 HMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
+..+........ .....++..+...+...|++++|...|++...
T Consensus 288 ~al~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 288 RTLALAVELGER--------------------------EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCH--------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 776532211110 00014666677777777777777777776654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-09 Score=106.89 Aligned_cols=221 Identities=9% Similarity=-0.075 Sum_probs=110.2
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhhcCCCCChhhhHHH
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK----GGYLEEASNLIYFLGERYGIYPILPVYNSF 164 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 164 (764)
.+..+...+...|+++.|.+.|++..+.+ +...+..+...|.. .|++++|...|++..+. + +...+..+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l 80 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C---CHHHHHHH
Confidence 34444444444455555555555544422 23344444444444 55555555555554432 1 33444444
Q ss_pred HHHHhc----cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh----hcChhHHHHHHHHHHhcCCCCHhhHHHHHHH
Q 004269 165 LGACAK----LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVW----QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236 (764)
Q Consensus 165 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 236 (764)
...|.. .+++++|+..|+...+.+ +..++..+-..|.. .+++++|...++...+.. +..++..+...
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 155 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 445544 555555555555544432 34444444444444 455555555555444321 33344444445
Q ss_pred hhc----cCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHc----cCC
Q 004269 237 FTR----LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGR----TQN 308 (764)
Q Consensus 237 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~ 308 (764)
|.. .+++++|...|++..+.+ +. ..+..+...|.. .++
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~--------------------------------~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK--DS--------------------------------PGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT--CH--------------------------------HHHHHHHHHHHHTCSSCCC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC--CH--------------------------------HHHHHHHHHHHcCCCCCcc
Confidence 544 556666666666655421 11 255555555655 666
Q ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 004269 309 SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS----DRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 309 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 358 (764)
+++|+..|++..+.+ +...+..+-..+.. .+++++|...|+...+.|
T Consensus 202 ~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 202 FKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 666666666666543 23344445555555 566666666666665544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-09 Score=106.43 Aligned_cols=226 Identities=8% Similarity=-0.104 Sum_probs=122.4
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhc----cCCHHHHHHHHHHHhhcCCCCChhhH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK----LHSMVHANLCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 196 (764)
++..+..+...|...|++++|...|++..+ +.+...+..+...|.. .+++++|+..|+...+.+ +..++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 455666666777777777777777777654 2234556666666766 777777777777766653 44555
Q ss_pred HHHHHHHHh----hcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccc
Q 004269 197 TELLKLAVW----QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL 272 (764)
Q Consensus 197 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (764)
..+-..+.. .+++++|...++...+. .+..++..+...|...
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~-------------------------------- 123 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDG-------------------------------- 123 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcC--------------------------------
Confidence 555555555 55555555555544432 1344444444444440
Q ss_pred cccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCChhHHH
Q 004269 273 RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS----DRGLRNGM 348 (764)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~ 348 (764)
....+++++|+..|++..+.+ +...+..+-..+.. .+++++|.
T Consensus 124 ------------------------------~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~ 170 (273)
T 1ouv_A 124 ------------------------------KVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKAL 170 (273)
T ss_dssp ------------------------------SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred ------------------------------CCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 000444455555554444432 22333333344443 45555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCccHHHHHHHHHh----cCCHHHHHHHHHH
Q 004269 349 EVLKIMQQNNLKPQDSTIATLSVECSK----ALELDLAEALLDQISRCTNPKPFSAFLAACDT----MDKPERAIKIFAK 420 (764)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~l~~~ 420 (764)
..++...+.+ +...+..+...|.. .++.++|...|+.....++...+..+...|.+ .+++++|...|++
T Consensus 171 ~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 171 ASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 5555554442 23444445555555 55555555555555544344445555556666 6667777777766
Q ss_pred Hhc
Q 004269 421 MRQ 423 (764)
Q Consensus 421 m~~ 423 (764)
..+
T Consensus 248 a~~ 250 (273)
T 1ouv_A 248 GCK 250 (273)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.3e-11 Score=126.91 Aligned_cols=237 Identities=10% Similarity=-0.072 Sum_probs=153.3
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHhhc----CC-CCChhhHHHHHHHHHhhcChhHHHHHHHHHHhc------CCCCHhh
Q 004269 161 YNSFLGACAKLHSMVHANLCLDLMDSR----MV-GKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH------YSLSIFS 229 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~ 229 (764)
|..+...|...|++++|+..|++..+. +- .....++..+...+...|++++|...++...+. .+....+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 444444444444444444444443321 00 112233444444455555555555555554432 1222345
Q ss_pred HHHHHHHhhccCC-----------------HHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhh
Q 004269 230 LRKFVWSFTRLRD-----------------LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 230 ~~~li~~~~~~g~-----------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
+..+...|...|+ ++.|...+++..+........ ...
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~--------------------------~~~ 222 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR--------------------------GAQ 222 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH--------------------------HHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH--------------------------HHH
Confidence 6667777777777 788888877765521111110 001
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----CC
Q 004269 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ-PS----SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK-----PQ 362 (764)
Q Consensus 293 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~ 362 (764)
..+|..+...+...|++++|+..|++..+.... ++ ..++..+...+...|++++|...+++..+.... ..
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 302 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE 302 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 258888999999999999999999998753211 11 126778888899999999999999988763211 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--------CCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 363 DSTIATLSVECSKALELDLAEALLDQISRCT--------NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 363 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
..++..+...|...|++++|...+++..... ...++..+...|.+.|++++|...|++..+
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4567788899999999999999999876532 234677888999999999999999998876
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-10 Score=120.44 Aligned_cols=278 Identities=9% Similarity=-0.067 Sum_probs=188.7
Q ss_pred CChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCcccc----HHHHHHHHHHHHccCCHHHHHHHHHHHhhh---cCCCC-
Q 004269 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLN----NKCYLLMMQALCKGGYLEEASNLIYFLGER---YGIYP- 156 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~- 156 (764)
.....+......+...|+++.|...|++..+.+ +.+ ..++..+...|...|++++|...|++..+. .+-.|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 344456667778889999999999999999874 223 357888899999999999999999876432 11112
Q ss_pred ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCC-CC----hhhHHHHHHHHHhhcC--------------------hhH
Q 004269 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KN----EVTYTELLKLAVWQKN--------------------LSA 211 (764)
Q Consensus 157 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~--------------------~~~ 211 (764)
...++..+...|...|++++|...++...+.... ++ ..++..+...+...|+ ++.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2447888888999999999999999887653111 12 3477788888889999 999
Q ss_pred HHHHHHHHHhc---C---CCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCc
Q 004269 212 VHEIWEDYIKH---Y---SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285 (764)
Q Consensus 212 a~~~~~~~~~~---~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (764)
|...+....+. . +....++..+..+|...|++++|...+++..+........
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------- 223 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------------------- 223 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH----------------------
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc----------------------
Confidence 99998887652 1 1224578888899999999999999999987732221110
Q ss_pred cccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 004269 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ-PS----SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK 360 (764)
Q Consensus 286 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 360 (764)
.....+|..+...+...|++++|...+++....... ++ ..++..+...+...|++++|...++...+....
T Consensus 224 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 224 ----AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 011247888889999999999999999887642100 11 335556666677777777777777766542111
Q ss_pred -CC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004269 361 -PQ----DSTIATLSVECSKALELDLAEALLDQI 389 (764)
Q Consensus 361 -~~----~~~~~~li~~~~~~g~~~~a~~~~~~~ 389 (764)
.+ ..++..+...|...|++++|...+++.
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 01 223334444444445555544444443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-10 Score=117.56 Aligned_cols=275 Identities=9% Similarity=-0.070 Sum_probs=187.0
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHHcCcccc----HHHHHHHHHHHHccCCHHHHHHHHHHHhhh---cCCC-CChhh
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLN----NKCYLLMMQALCKGGYLEEASNLIYFLGER---YGIY-PILPV 160 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~-~~~~~ 160 (764)
.+......+...|+++.|..+++++.+.+ +.+ ...+..+...|...|++++|...+++..+. .+.. .....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34455667778899999999999999874 223 367888899999999999999999876432 1111 22457
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHhhcCCC-CC----hhhHHHHHHHHHhhcC--------------------hhHHHHH
Q 004269 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVG-KN----EVTYTELLKLAVWQKN--------------------LSAVHEI 215 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~--------------------~~~a~~~ 215 (764)
+..+...+...|++++|...++...+.... ++ ..++..+...+...|+ ++.|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 788889999999999999999887653111 12 3377778888888999 8999988
Q ss_pred HHHHHhc------CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccc
Q 004269 216 WEDYIKH------YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289 (764)
Q Consensus 216 ~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (764)
++...+. .+....++..+...+...|++++|...+++..+........
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------------------------- 219 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK-------------------------- 219 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH--------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh--------------------------
Confidence 8887652 12224478888888999999999999999887632221110
Q ss_pred hhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----
Q 004269 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL-QPS----SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLK---- 360 (764)
Q Consensus 290 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---- 360 (764)
.....++..+...+...|++++|...+++...... .++ ..++..+...+...|++++|...++...+....
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 00124788888889999999999999888764210 011 335556666777777777777777766542110
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004269 361 -PQDSTIATLSVECSKALELDLAEALLDQIS 390 (764)
Q Consensus 361 -~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 390 (764)
....++..+...|.+.|++++|...+++..
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 012234445555555555555555555544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-07 Score=103.77 Aligned_cols=459 Identities=10% Similarity=0.011 Sum_probs=259.5
Q ss_pred ChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC---HHHHH
Q 004269 102 DPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS---MVHAN 178 (764)
Q Consensus 102 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~ 178 (764)
........+++.+..+ +-|...|..++..+.+.+.++.+..+|+++.... +.....|..-+..-.+.++ ++.+.
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 3444555667666665 5689999999999999999999999999998764 4456678888888888888 99999
Q ss_pred HHHHHHhhcC-CCCChhhHHHHHHHHHhhcCh--------hHHHHHHHHHHhc--C--CCCHhhHHHHHHHhhc------
Q 004269 179 LCLDLMDSRM-VGKNEVTYTELLKLAVWQKNL--------SAVHEIWEDYIKH--Y--SLSIFSLRKFVWSFTR------ 239 (764)
Q Consensus 179 ~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~~--~--~~~~~~~~~li~~~~~------ 239 (764)
.+|++..... ..|+...|..-+....+.++. +.+.++|+..+.. . +.+...|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 9999998864 147888888888766665554 3455788877753 3 2345677777765432
Q ss_pred ---cCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHH
Q 004269 240 ---LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLM 316 (764)
Q Consensus 240 ---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 316 (764)
.++++.+.++|+.+.. .|..... .+|.. |
T Consensus 204 ~eeq~~~~~~R~iy~raL~---iP~~~~~----------------------------~~w~~-----------------Y 235 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLC---QPMDCLE----------------------------SMWQR-----------------Y 235 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTT---SCCSSHH----------------------------HHHHH-----------------H
T ss_pred HHHHhHHHHHHHHHHHHHh---CccHHHH----------------------------HHHHH-----------------H
Confidence 3356677778877764 1221000 12221 1
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH--CCCC---CCH-HHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 004269 317 LQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ--NNLK---PQD-STIATLSVECSKAL-ELDLAEALLDQI 389 (764)
Q Consensus 317 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~---~~~-~~~~~li~~~~~~g-~~~~a~~~~~~~ 389 (764)
....+. + +..+...++.- ...++..|...+.++.. .++. |.. .+.. ....-..+ .......+
T Consensus 236 ~~fe~~-~--~~~~a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ql~l---- 304 (679)
T 4e6h_A 236 TQWEQD-V--NQLTARRHIGE--LSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQQLLI---- 304 (679)
T ss_dssp HHHHHH-H--CTTTHHHHHHH--HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHHHHHH----
T ss_pred HHHHHh-c--CcchHHHHHHH--hhHHHHHHHHHHHHHHHHHHhHhhccccccccch--hccCCCCchhHHHHHHH----
Confidence 111110 0 11111111111 11233344444444322 1111 000 0000 00000000 00000111
Q ss_pred hhCCCCccHHHHHHHHHhcC-------CHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhhhhhhhHHHHH
Q 004269 390 SRCTNPKPFSAFLAACDTMD-------KPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMFSQVDSAKRIN 462 (764)
Q Consensus 390 ~~~~~~~~~~~li~~~~~~~-------~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (764)
|...+.---..+ ..+.+..+|++...-+.-....|
T Consensus 305 --------W~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW------------------------------ 346 (679)
T 4e6h_A 305 --------WLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIW------------------------------ 346 (679)
T ss_dssp --------HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHH------------------------------
T ss_pred --------HHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHH------------------------------
Confidence 222221111111 12234455665554111111111
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHH-HHHHhc--CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 004269 463 AIEMDMARNNIQHSHISMKNLLKALGAEGMIRELI-QYFCDS--KTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCG 539 (764)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g 539 (764)
-..+..+...|+.++|. .+|+.. ..+.+...|-..+...-+.|++++|.++|+.+....
T Consensus 347 ------------------~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 347 ------------------FNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp ------------------HHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 11122222233333443 444332 122344456666666667777777777777766531
Q ss_pred ---------CCCC------------HHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHH
Q 004269 540 ---------IPPN------------AATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDY-GDFDE 597 (764)
Q Consensus 540 ---------~~p~------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~-g~~~~ 597 (764)
-.|+ ...|...+....+.|+.+.|..+|..+.+.-..+....|...+..-.+. ++.+.
T Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~ 488 (679)
T 4e6h_A 409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKT 488 (679)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHH
Confidence 0132 2357777777778899999999999998861112233343333333344 45899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004269 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP--DPSTCHFVFSGYVNCGFHNSAMEALQVL 675 (764)
Q Consensus 598 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 675 (764)
|.++|+...+. ++.+...|...+......|+.+.|..+|++.+.....+ ....|...+..=.+.|+.+.+.++.+++
T Consensus 489 Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 489 ACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999875 45577788889998889999999999999998643222 2346666777777889999999999988
Q ss_pred HHhh
Q 004269 676 SMRM 679 (764)
Q Consensus 676 ~~~~ 679 (764)
....
T Consensus 568 ~~~~ 571 (679)
T 4e6h_A 568 FEKF 571 (679)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 6543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-09 Score=108.43 Aligned_cols=220 Identities=9% Similarity=0.008 Sum_probs=177.1
Q ss_pred chHHHHHHhccccCCCCChhcHHHHHHHhh-------CCCCh-------hHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004269 69 SRASHLLLNLGHAHHSLGADDFFHILNYCA-------RSPDP-------LFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 69 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 134 (764)
++|+.+|+...... +.++..|..+...+. +.|++ +.|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888999988765 567777777777665 35776 8999999999983124466789999999999
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCC-hh-hhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH-hhcChhH
Q 004269 135 GGYLEEASNLIYFLGERYGIYPI-LP-VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAV-WQKNLSA 211 (764)
Q Consensus 135 ~g~~~~A~~~~~~m~~~~~~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~ 211 (764)
.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+...+... ++...|........ ..|+.+.
T Consensus 112 ~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999753 454 33 799999999999999999999999988643 24444443333222 3699999
Q ss_pred HHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhh-ccCcchhcccccccccccccCCCccCCccccch
Q 004269 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA-MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMK 290 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (764)
|..+|+..++..+.+...|..++..+.+.|+++.|..+|++..+.. +.|+..
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~--------------------------- 240 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS--------------------------- 240 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC---------------------------
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH---------------------------
Confidence 9999999999888899999999999999999999999999998842 233211
Q ss_pred hhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 291 VLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 291 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
...|..++....+.|+.+.|..+++++.+.
T Consensus 241 --~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 241 --GEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp --HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 148889999999999999999999999875
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.9e-09 Score=105.80 Aligned_cols=218 Identities=12% Similarity=0.056 Sum_probs=157.5
Q ss_pred hHHHHHHHHHHHcCccccHHHHHHHHHHHH-------ccCCH-------HHHHHHHHHHhhhcCCCC-ChhhhHHHHHHH
Q 004269 104 LFVMETWRMMEEKEIGLNNKCYLLMMQALC-------KGGYL-------EEASNLIYFLGERYGIYP-ILPVYNSFLGAC 168 (764)
Q Consensus 104 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~ 168 (764)
+.|..+|++.++.. +.++..|..++..+. +.|++ ++|..+|++..+. +.| +...|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--LLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT--TTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence 57888888888864 557778887777765 35775 8999999988641 234 445788888888
Q ss_pred hccCCHHHHHHHHHHHhhcCCCCCh-h-hHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhh-ccCCHHH
Q 004269 169 AKLHSMVHANLCLDLMDSRMVGKNE-V-TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT-RLRDLKS 245 (764)
Q Consensus 169 ~~~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 245 (764)
.+.|++++|..+|+...+. .|+. . .|..+...+.+.|+++.|..+|+...+..+.+...|........ ..|+.+.
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 8899999999999998874 4443 2 78888888888888888888888888766666666655444422 3588888
Q ss_pred HHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-C
Q 004269 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG-L 324 (764)
Q Consensus 246 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~ 324 (764)
|..+|+...+ ..|+. ...|..++..+.+.|++++|..+|++..... +
T Consensus 188 A~~~~~~al~--~~p~~------------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 188 AFKIFELGLK--KYGDI------------------------------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHHHHHHH--HHTTC------------------------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHH--hCCCc------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 8888888877 33433 1477777888888888888888888887753 3
Q ss_pred CCC--cccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 004269 325 QPS--SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 325 ~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 358 (764)
.|+ ...|..++....+.|+.+.|..+++.+.+..
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 443 3356666666677777777777777776643
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-09 Score=99.52 Aligned_cols=167 Identities=8% Similarity=-0.042 Sum_probs=109.5
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
++.+|..+...|...|++++|++.|++..+.+ +-+..+|..+...|.+.|++++|+..+......... +...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 45566666667777777777777777665543 234456666666667777777777777666654322 444555555
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCC
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
..+...++++.+...+....+..+.+..++..+..+|.+.|++++|++.|++..+ ..|+.
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~------------------ 140 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGF------------------ 140 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchh------------------
Confidence 5666667777777777776666666677777777777777777777777777766 44443
Q ss_pred ccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
..+|..+..+|.+.|++++|++.|++..+.
T Consensus 141 ------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 141 ------------IRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ------------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 146777777777777777777777777653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.7e-10 Score=121.59 Aligned_cols=214 Identities=8% Similarity=-0.148 Sum_probs=182.3
Q ss_pred CcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCCh-hHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHH
Q 004269 67 ERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDP-LFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLI 145 (764)
Q Consensus 67 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 145 (764)
.+++++..++...... +.+...+..+..++...|++ +.|.+.|++..+.. +.+...|..+...|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3567777777766544 45677888888999999999 99999999999875 456889999999999999999999999
Q ss_pred HHHhhhcCCCCChhhhHHHHHHHhcc---------CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhh--------cC
Q 004269 146 YFLGERYGIYPILPVYNSFLGACAKL---------HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ--------KN 208 (764)
Q Consensus 146 ~~m~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--------~~ 208 (764)
++..+. .|+...+..+...|... |++++|+..|++..+..+. +...|..+..++... |+
T Consensus 161 ~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 161 SGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccch
Confidence 998754 47778899999999999 9999999999999886433 677888898899888 99
Q ss_pred hhHHHHHHHHHHhcCC---CCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCc
Q 004269 209 LSAVHEIWEDYIKHYS---LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285 (764)
Q Consensus 209 ~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (764)
+++|...|+...+..+ .+...|..+..+|...|++++|...|++..+ ..|+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~----------------------- 291 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAW----------------------- 291 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC-----------------------
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC-----------------------
Confidence 9999999999998766 7899999999999999999999999999988 55654
Q ss_pred cccchhhhhhHHHHHHHHHccCCHHHHHHHHHH
Q 004269 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQ 318 (764)
Q Consensus 286 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 318 (764)
...+..+...+...|++++|++.+.+
T Consensus 292 -------~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 292 -------PEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 24788888888888999888876544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-09 Score=100.51 Aligned_cols=170 Identities=11% Similarity=-0.057 Sum_probs=134.1
Q ss_pred ChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHH
Q 004269 86 GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165 (764)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 165 (764)
++..|..+..++...|+++.|.+.|++.++.+ +-+...+..+...|.+.|++++|...++...... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 55677788888888888888888888888775 4467778888888888888888888888776543 23455667777
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHH
Q 004269 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 245 (764)
..+...++++.|...+.......+ .+...+..+...+...|++++|.+.+++..+..|.+..++..+..+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 778888888888888888776532 2566777778888888888888888888888788888889999999999999999
Q ss_pred HHHHHHHHHHhhccCc
Q 004269 246 AYETLQHMVALAMMGK 261 (764)
Q Consensus 246 A~~~~~~~~~~~~~~~ 261 (764)
|.+.|++..+ +.|+
T Consensus 160 A~~~~~~al~--~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALE--KEEK 173 (184)
T ss_dssp HHHHHHHHHH--TTHH
T ss_pred HHHHHHHHHh--CCcc
Confidence 9999999887 4454
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=1e-09 Score=114.09 Aligned_cols=234 Identities=10% Similarity=-0.059 Sum_probs=172.3
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHc----Cccc-cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-----hhhhH
Q 004269 93 ILNYCARSPDPLFVMETWRMMEEK----EIGL-NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-----LPVYN 162 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~ 162 (764)
....+...|+++.|.+.+++..+. +-.+ ...++..+...|...|++++|...+++..+...-.++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677889999999999999874 2122 3468889999999999999999999887643221122 34788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhcCCC-CC----hhhHHHHHHHHHhhcChhHHHHHHHHHHh-----cC-CCCHhhHH
Q 004269 163 SFLGACAKLHSMVHANLCLDLMDSRMVG-KN----EVTYTELLKLAVWQKNLSAVHEIWEDYIK-----HY-SLSIFSLR 231 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~~~~~ 231 (764)
.+...|...|++++|+..|+...+.... ++ ..++..+...|...|++++|...+++..+ +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999887653111 11 23778888899999999999999999987 34 44567899
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCC---
Q 004269 232 KFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN--- 308 (764)
Q Consensus 232 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--- 308 (764)
.+..+|.+.|++++|...+++..+.....+.+.. ...++.+...+...|+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------~~~~~~l~~~~~~~~~~~~ 321 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY---------------------------LSEFEFLKSLYLSGPDEEA 321 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH---------------------------HHHHHHHHHHHTSSCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH---------------------------HHHHHHHHHHHhCCCcHHH
Confidence 9999999999999999999998873222111100 1246677788888888
Q ss_pred HHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 309 SGLAEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 309 ~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
+++|+.++++. +..|+ ...+..+...+...|++++|...++...+
T Consensus 322 ~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 322 IQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66777766655 22233 23555666777788888888888877654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=8e-10 Score=114.90 Aligned_cols=230 Identities=9% Similarity=-0.046 Sum_probs=140.4
Q ss_pred HhccCCHHHHHHHHHHHhhc----CCCC-ChhhHHHHHHHHHhhcChhHHHHHHHHHHhc--CCC-----CHhhHHHHHH
Q 004269 168 CAKLHSMVHANLCLDLMDSR----MVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKH--YSL-----SIFSLRKFVW 235 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~-----~~~~~~~li~ 235 (764)
+...|++++|...|+...+. +-.+ ...++..+...+...|+++.|...+.+..+. ..+ ...+++.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 34445555555555544332 0000 1234444444555555555555555555442 111 1345667777
Q ss_pred HhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHH
Q 004269 236 SFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQL 315 (764)
Q Consensus 236 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 315 (764)
+|...|++++|...|++..+.....+.. .....+++.+...|...|++++|+..
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------~~~~~~~~~lg~~y~~~g~~~~A~~~ 246 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQP--------------------------QLMGRTLYNIGLCKNSQSQYEDAIPY 246 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCCh--------------------------HHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7888888888888888776632221110 00124777888888888888888888
Q ss_pred HHHHHHC----CC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHH
Q 004269 316 MLQMQSL----GL-QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNN----LKPQDSTIATLSVECSKALE---LDLAE 383 (764)
Q Consensus 316 ~~~m~~~----g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~ 383 (764)
|++..+. +. .....++..+...+...|++++|...+++..+.. -......+..+...|...|+ +++|.
T Consensus 247 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al 326 (383)
T 3ulq_A 247 FKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFF 326 (383)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 8887652 22 2234467777778888888888888888776532 11112234567777778888 77777
Q ss_pred HHHHHHhhCC-CCccHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 004269 384 ALLDQISRCT-NPKPFSAFLAACDTMDKPERAIKIFAKMRQ 423 (764)
Q Consensus 384 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~l~~~m~~ 423 (764)
.+++.....+ ....+..+...|...|++++|...|++..+
T Consensus 327 ~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 327 DFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777663321 334566788889999999999999888765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-09 Score=117.04 Aligned_cols=211 Identities=12% Similarity=-0.023 Sum_probs=176.1
Q ss_pred hhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH-HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHH
Q 004269 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL-EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCL 181 (764)
Q Consensus 103 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 181 (764)
++.+.+.++...... +.+...+..+...|...|++ ++|++.|++..+.+ +.+...|..+...|.+.|++++|+..|
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 556666777655543 45778899999999999999 99999999987654 335678999999999999999999999
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHhh---------cChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc--------CCHH
Q 004269 182 DLMDSRMVGKNEVTYTELLKLAVWQ---------KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL--------RDLK 244 (764)
Q Consensus 182 ~~m~~~g~~p~~~t~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 244 (764)
+...+. .|+..++..+...+... |++++|.+.+++..+..+.+...|..+..+|... |+++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999886 46778888898899999 9999999999999998888999999999999999 9999
Q ss_pred HHHHHHHHHHHhhccC---cchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 245 SAYETLQHMVALAMMG---KLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 245 ~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
+|...|++..+ +.| +. ...|..+...|...|++++|++.|++..+
T Consensus 239 ~A~~~~~~al~--~~p~~~~~------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 239 QALSAYAQAEK--VDRKASSN------------------------------PDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHH--HCGGGGGC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcccC------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999998 445 32 25889999999999999999999999987
Q ss_pred CCCCCC-cccHHHHHHHHHhcCChhHHHHHHH
Q 004269 322 LGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLK 352 (764)
Q Consensus 322 ~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~ 352 (764)
.. |+ ...+..+..++...|++++|...+.
T Consensus 287 l~--p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 287 LD--PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HC--TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hC--CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 53 44 4456677777777787777776543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=9.7e-11 Score=117.84 Aligned_cols=249 Identities=10% Similarity=-0.024 Sum_probs=171.3
Q ss_pred ccchhhHHHHHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhcccc--
Q 004269 4 PLLRTRFQLIADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHA-- 81 (764)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-- 81 (764)
|.....+..+...+...|++++|. .++++.. +.+....+..+......+..+...+...|++++|+..|++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~--~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAV-PLCKQAL--EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHH--HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHH--HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 455667888999999999999999 6655542 11111111123334556667778888999999999999998754
Q ss_pred ----C-CCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHc------Cc-cccHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 004269 82 ----H-HSLGADDFFHILNYCARSPDPLFVMETWRMMEEK------EI-GLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 82 ----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 149 (764)
+ .+.....+..+...+...|+++.|.+.+++..+. +- +.....+..+...|...|++++|..+|++..
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 1334566888889999999999999999998875 22 3345678889999999999999999999886
Q ss_pred hhc-----C-CCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc-------CCCCChh-------hHHHHHHHHHhhcCh
Q 004269 150 ERY-----G-IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR-------MVGKNEV-------TYTELLKLAVWQKNL 209 (764)
Q Consensus 150 ~~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~-------t~~~ll~~~~~~~~~ 209 (764)
+.. + .+....++..+...|...|++++|...|+.+.+. ...+... .+..+...+...+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 531 1 1223457888999999999999999999998763 1122221 122222333345556
Q ss_pred hHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 210 SAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
..+...+.......+.+..++..+..+|.+.|++++|.+.|++..+
T Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 261 GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666677766665666778899999999999999999999999887
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-09 Score=109.89 Aligned_cols=240 Identities=8% Similarity=-0.109 Sum_probs=151.0
Q ss_pred hhhhhHHHHHHHHHhhCCcchHHHHHHhcccc-------CCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHc------
Q 004269 50 SISKATQMQIVDALCRGERSRASHLLLNLGHA-------HHSLGADDFFHILNYCARSPDPLFVMETWRMMEEK------ 116 (764)
Q Consensus 50 ~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------ 116 (764)
.....+..+...+...|++++|+.+|+++... ..+.....+..+..++...|+++.|...+++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34555666777788889999999999888763 22344556777888888888999998888888764
Q ss_pred C-ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc-----CC-CCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc--
Q 004269 117 E-IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY-----GI-YPILPVYNSFLGACAKLHSMVHANLCLDLMDSR-- 187 (764)
Q Consensus 117 ~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 187 (764)
+ .+....++..+...|...|++++|...|++..+.. +- +.....+..+...+...|++++|+..|+...+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2 13345677888888888899999988888876531 11 223446777888888888888888888887653
Q ss_pred ----CCCC-ChhhHHHHHHHHHhhcChhHHHHHHHHHHhc--------CCCCHh-------hHHHHHHHhhccCCHHHHH
Q 004269 188 ----MVGK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKH--------YSLSIF-------SLRKFVWSFTRLRDLKSAY 247 (764)
Q Consensus 188 ----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~-------~~~~li~~~~~~g~~~~A~ 247 (764)
+..| ...++..+...+...|++++|...++.+.+. ..+... .+..+...+...+.+..|.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 1122 2345666777777788888888887777642 111111 1111111222222333333
Q ss_pred HHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
..+..... ..|.. ..+|..+...|.+.|++++|...|++..+
T Consensus 265 ~~~~~~~~--~~~~~------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 265 GWYKACKV--DSPTV------------------------------TTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----------CHHH------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcCC--CCchH------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333322 11111 25788888899999999999999888765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.07 E-value=5.3e-08 Score=100.63 Aligned_cols=169 Identities=14% Similarity=0.020 Sum_probs=95.6
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHhcCC-----CCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccc
Q 004269 197 TELLKLAVWQKNLSAVHEIWEDYIKHYS-----LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGR 271 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (764)
..+...+...|++++|...++...+..+ ....++..+...+...|++++|...+++..+....++.+..
T Consensus 139 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~------ 212 (373)
T 1hz4_A 139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD------ 212 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchh------
Confidence 3344444555555555555555543211 12345666777888889999999998888763222221000
Q ss_pred ccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHhcCChhHHH
Q 004269 272 LRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS---HTYDGFIRAIVSDRGLRNGM 348 (764)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~ 348 (764)
.........+..+...|++++|...+++.......+.. ..+..+...+...|++++|.
T Consensus 213 -------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 273 (373)
T 1hz4_A 213 -------------------WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 273 (373)
T ss_dssp -------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 00001113344577899999999999887654321111 13455667777888888888
Q ss_pred HHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 004269 349 EVLKIMQQN----NLKPQD-STIATLSVECSKALELDLAEALLDQIS 390 (764)
Q Consensus 349 ~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~ 390 (764)
..++..... |..++. ..+..+...+...|+.++|...+.+..
T Consensus 274 ~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 274 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 888776542 211112 134445555666666666666665554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.06 E-value=9.4e-09 Score=106.49 Aligned_cols=305 Identities=9% Similarity=-0.003 Sum_probs=195.7
Q ss_pred hhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHH---------HHHHhccccCCCCCh-
Q 004269 18 CKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRAS---------HLLLNLGHAHHSLGA- 87 (764)
Q Consensus 18 ~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~---------~~~~~~~~~~~~~~~- 87 (764)
.+..+.++|. .+.+++. ..+..+ +-.++...+.-....+...-.+....+. ..++.+.....+.+.
T Consensus 23 i~~~~~~~A~-~l~~~i~--~~~~~~-~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 98 (378)
T 3q15_A 23 IRQFSVPDAE-ILKAEVE--QDIQQM-EEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGL 98 (378)
T ss_dssp HHTTCHHHHH-HHHHHHH--HHGGGB-CCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHH
T ss_pred HHHcCHHHHH-HHHHHHH--HHHHHh-cccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccH
Confidence 7788899998 6655442 222222 1122222111111122222234444444 666665432211111
Q ss_pred -h--cHHHHHHHhhCCCChhHHHHHHHHHHHcC--c---cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCC---
Q 004269 88 -D--DFFHILNYCARSPDPLFVMETWRMMEEKE--I---GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYP--- 156 (764)
Q Consensus 88 -~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--- 156 (764)
. .+......+...|+++.|...+++..+.- + +....++..+...|...|+++.|...+++..+...-.+
T Consensus 99 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 1 12334455668899999999999988642 1 11345788899999999999999999988754321111
Q ss_pred --ChhhhHHHHHHHhccCCHHHHHHHHHHHhhc----CCC-CChhhHHHHHHHHHhhcChhHHHHHHHHHHh-----cCC
Q 004269 157 --ILPVYNSFLGACAKLHSMVHANLCLDLMDSR----MVG-KNEVTYTELLKLAVWQKNLSAVHEIWEDYIK-----HYS 224 (764)
Q Consensus 157 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~ 224 (764)
...+++.+...|...|++++|++.|+...+. +-. ....++..+...+...|++++|.+.+++..+ +.+
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 2447888999999999999999999887653 111 1234677788889999999999999999987 555
Q ss_pred CCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHH
Q 004269 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304 (764)
Q Consensus 225 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 304 (764)
....++..+..+|.+.|++++|...+++..+.....+.... ...++.+...+.
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------~~~~~~l~~ly~ 311 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY---------------------------KELFLFLQAVYK 311 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH---------------------------HHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH---------------------------HHHHHHHHHHHh
Confidence 56788999999999999999999999999874322111000 135566666777
Q ss_pred ccCC---HHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 305 RTQN---SGLAEQLMLQMQSLGLQPSS-HTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 305 ~~~~---~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
..++ +++|+..+++ .+..|+. ..+..+...+...|++++|...|+...+
T Consensus 312 ~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 312 ETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777 6677666665 2222222 2445566667777777777777776654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.05 E-value=7.9e-09 Score=94.50 Aligned_cols=163 Identities=11% Similarity=-0.095 Sum_probs=97.6
Q ss_pred hhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004269 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 131 (764)
...+..+...+...|++++|+..|+.+.... +.+...+..+...+...|+++.|.+.++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3445555666777888888888888777654 3455566666677777777777777777776653 3455666666667
Q ss_pred HHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhH
Q 004269 132 LCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSA 211 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 211 (764)
|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++...+... .+..++..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHH
Confidence 777777777777777665432 23444555566666666666666666666555421 133344444444444444444
Q ss_pred HHHHHHHH
Q 004269 212 VHEIWEDY 219 (764)
Q Consensus 212 a~~~~~~~ 219 (764)
|...++.+
T Consensus 163 A~~~~~~~ 170 (186)
T 3as5_A 163 ALPHFKKA 170 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.6e-08 Score=92.52 Aligned_cols=164 Identities=10% Similarity=-0.058 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345555566666666666666666654321 2344556666666666667777766666666542 2245556666666
Q ss_pred HHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCcc
Q 004269 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (764)
+...|++++|.+.++.+.+..+.+...+..+..++...|++++|...++++.+. .|+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~-------------------- 143 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNE-------------------- 143 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC--------------------
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--Cccc--------------------
Confidence 666677777777777666666666666677777777777777777777776652 2322
Q ss_pred CCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 283 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
...|..+...+...|++++|...+++..+
T Consensus 144 ----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 144 ----------GKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp ----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13666667777777777777777776654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.02 E-value=5e-08 Score=100.97 Aligned_cols=202 Identities=9% Similarity=0.036 Sum_probs=113.2
Q ss_pred hHHHHHHHHHhhcChhHHHHHHHHHHhc---CC----CCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccc
Q 004269 195 TYTELLKLAVWQKNLSAVHEIWEDYIKH---YS----LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRT 267 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 267 (764)
++..+...+...|+++.|...+....+. .. ....+++.+..+|...|+++.|...|++..+.....+..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~---- 218 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND---- 218 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH----
Confidence 3344444444555555555555444431 00 013355566666667777777777776665522111110
Q ss_pred ccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCcccHHHHHHHHHhcC
Q 004269 268 SEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS-----LGLQPSSHTYDGFIRAIVSDR 342 (764)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~ll~~~~~~~ 342 (764)
.....+++.+...|...|++++|+..|++... .. +....++..+...+.+.|
T Consensus 219 ----------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g 275 (378)
T 3q15_A 219 ----------------------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAG 275 (378)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTT
T ss_pred ----------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCC
Confidence 00014666777777777777777777777665 22 112445666666777777
Q ss_pred ChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCHHHH
Q 004269 343 GLRNGMEVLKIMQQNNL----KPQDSTIATLSVECSKALE---LDLAEALLDQISRCT-NPKPFSAFLAACDTMDKPERA 414 (764)
Q Consensus 343 ~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a 414 (764)
++++|...+++..+... ......+..+...|...++ +.+|...++.....+ ....+..+...|.+.|++++|
T Consensus 276 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A 355 (378)
T 3q15_A 276 QTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQA 355 (378)
T ss_dssp CHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHH
Confidence 77777777777665321 1112234455555666666 666666666532211 223455677778888888888
Q ss_pred HHHHHHHhc
Q 004269 415 IKIFAKMRQ 423 (764)
Q Consensus 415 ~~l~~~m~~ 423 (764)
...|++..+
T Consensus 356 ~~~~~~al~ 364 (378)
T 3q15_A 356 AAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-08 Score=113.64 Aligned_cols=166 Identities=8% Similarity=-0.006 Sum_probs=118.9
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
+...|+.|...|.+.|++++|++.|++..+.+ +-+...|+.|..+|.+.|++++|+..|++..+.... +..+|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 45567777777777777777777777766543 223456777777777777777777777777664322 455677777
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCC
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
.++...|++++|.+.|++.++..+.+..+++.+..+|...|++++|+..|++..+ +.|+.
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~------------------ 144 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDF------------------ 144 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCC------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC------------------
Confidence 7777777777777777777776677777788888888888888888888888777 55554
Q ss_pred ccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 281 IPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
...|..+...+...|++++|.+.+++..+
T Consensus 145 ------------~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 145 ------------PDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp ------------HHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred ------------hHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 25777788888888888877777776653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.01 E-value=8.1e-08 Score=99.26 Aligned_cols=268 Identities=9% Similarity=-0.033 Sum_probs=178.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHhhcCCC-CCh----hhHHH
Q 004269 128 MMQALCKGGYLEEASNLIYFLGERYGIYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KNE----VTYTE 198 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ 198 (764)
....+...|++++|...+++.....+ ..+. ..++.+...+...|++++|...+++....... ++. .++..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445567777777777777654321 1111 13555666677778888887777776542111 111 23455
Q ss_pred HHHHHHhhcChhHHHHHHHHHHhc-----CC--C-CHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccc
Q 004269 199 LLKLAVWQKNLSAVHEIWEDYIKH-----YS--L-SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG 270 (764)
Q Consensus 199 ll~~~~~~~~~~~a~~~~~~~~~~-----~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 270 (764)
+...+...|++++|...++...+. .+ | ....+..+..++...|++++|...+++..+........
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------- 171 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ------- 171 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG-------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH-------
Confidence 666677788888888888877752 11 2 34566778889999999999999999988732221110
Q ss_pred cccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc-ccHH-----HHHHHHHhcCCh
Q 004269 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS-HTYD-----GFIRAIVSDRGL 344 (764)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~-----~ll~~~~~~~~~ 344 (764)
. ...+|..+...+...|++++|...+++.....-.++. ..+. .....+...|++
T Consensus 172 -------------------~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 231 (373)
T 1hz4_A 172 -------------------Q-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 231 (373)
T ss_dssp -------------------G-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred -------------------H-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH
Confidence 0 0147888899999999999999999998754222222 1122 222346789999
Q ss_pred hHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-------C-CccHHHHHHHHHhcCCHHH
Q 004269 345 RNGMEVLKIMQQNNLKPQ---DSTIATLSVECSKALELDLAEALLDQISRCT-------N-PKPFSAFLAACDTMDKPER 413 (764)
Q Consensus 345 ~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~-~~~~~~li~~~~~~~~~~~ 413 (764)
++|...++........+. ...+..+...+...|+.++|...++...... + ...+..+..++...|+.++
T Consensus 232 ~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 311 (373)
T 1hz4_A 232 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD 311 (373)
T ss_dssp HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHH
Confidence 999999998876443221 2245677888999999999999998875431 1 1245556777889999999
Q ss_pred HHHHHHHHhc
Q 004269 414 AIKIFAKMRQ 423 (764)
Q Consensus 414 a~~l~~~m~~ 423 (764)
|...+++...
T Consensus 312 A~~~l~~al~ 321 (373)
T 1hz4_A 312 AQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.98 E-value=3.3e-09 Score=104.76 Aligned_cols=236 Identities=11% Similarity=-0.047 Sum_probs=162.4
Q ss_pred HhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhcccc------C-CCCChhc
Q 004269 17 FCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHA------H-HSLGADD 89 (764)
Q Consensus 17 ~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 89 (764)
....|++++|. .++++.. +.+....+..+......+..+...+...|++++|+..|++.... + .+.....
T Consensus 11 ~~~~~~~~~A~-~~~~~al--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (283)
T 3edt_B 11 SSGLVPRGSAV-PLCKQAL--EDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAAT 87 (283)
T ss_dssp --CCSCSSSHH-HHHHHHH--HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred cCCCCCHHHHH-HHHHHHH--HHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHH
Confidence 45678888888 6655553 33444444444445667777788899999999999999988754 2 1234567
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcC-------ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhh------cCCCC
Q 004269 90 FFHILNYCARSPDPLFVMETWRMMEEKE-------IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER------YGIYP 156 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~ 156 (764)
+..+..++...|+++.|.+.+++..+.. .+....++..+...|...|++++|...|++..+. ...+.
T Consensus 88 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 88 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 8889999999999999999999988751 1334668889999999999999999999988653 11122
Q ss_pred ChhhhHHHHHHHhccCCHHHHHHHHHHHhhc-------CCCCChhh-HHHHHHHHHhhcChh------HHHHHHHHHHhc
Q 004269 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSR-------MVGKNEVT-YTELLKLAVWQKNLS------AVHEIWEDYIKH 222 (764)
Q Consensus 157 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t-~~~ll~~~~~~~~~~------~a~~~~~~~~~~ 222 (764)
...++..+...|...|++++|...|+...+. ...+.... +..+.......+... .+...+......
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD 247 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC
Confidence 3457888999999999999999999988763 12233333 333333333322222 222222222222
Q ss_pred CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 223 YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 223 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.+....++..+..+|...|++++|..+|++..+
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334456788999999999999999999998875
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-08 Score=112.03 Aligned_cols=165 Identities=12% Similarity=-0.015 Sum_probs=112.5
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
...|+.+..++.+.|++++|.+.|++.++.. +-+...|..+..+|.+.|++++|+..|++..+.+ +-+...|+.+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 4556666667777777777777777776653 3345666777777777777777777777665432 223456677777
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHH
Q 004269 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSA 246 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 246 (764)
+|.+.|++++|++.|++..+.... +..+|..+..++...|++++|.+.|++.++..+.+..++..+..+|...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 777777777777777776664322 4556677777777777777777777777776666777777777777777777777
Q ss_pred HHHHHHHHH
Q 004269 247 YETLQHMVA 255 (764)
Q Consensus 247 ~~~~~~~~~ 255 (764)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777665
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-08 Score=99.95 Aligned_cols=159 Identities=10% Similarity=-0.111 Sum_probs=103.7
Q ss_pred HhhCCcchHHHHHHhcccc-------CCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHc------Cc-cccHHHHHHH
Q 004269 63 LCRGERSRASHLLLNLGHA-------HHSLGADDFFHILNYCARSPDPLFVMETWRMMEEK------EI-GLNNKCYLLM 128 (764)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~l 128 (764)
...|++++|+.+|++..+. +.+.....+..+..++...|+++.|...+++..+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777665541 22233456777777788888888888888877754 21 2345577778
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhc-----C-CCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc------CCCC-Chhh
Q 004269 129 MQALCKGGYLEEASNLIYFLGERY-----G-IYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR------MVGK-NEVT 195 (764)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~m~~~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t 195 (764)
...|...|++++|...|++..+.. . .+....++..+...|...|++++|...|+...+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 888888888888888888775431 1 1223456777777788888888888888777653 1112 2345
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHh
Q 004269 196 YTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 196 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
+..+...+...|++++|...++...+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666667777777777777776654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.4e-08 Score=92.55 Aligned_cols=196 Identities=9% Similarity=-0.138 Sum_probs=147.9
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 132 (764)
..+......+...|++++|+..|++......+++...+..+..++...|+++.|.+.+++..+.+ +.+...|..+...|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHH
Confidence 45666677788999999999999999887743677777778888999999999999999999875 44677889999999
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCCh-------hhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCC---hhhHHHHHHH
Q 004269 133 CKGGYLEEASNLIYFLGERYGIYPIL-------PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN---EVTYTELLKL 202 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~ 202 (764)
...|++++|+..|++..+..+ .+. ..|..+...+...|++++|+..|+...+. .|+ ...+..+...
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVP--GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 999999999999999876542 233 45777888888999999999999998875 454 4456666666
Q ss_pred HHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
+...| ...++.+......+...|.... ....+.+++|...|++..+ +.|+.
T Consensus 163 ~~~~~-----~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~ 213 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNR 213 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHH-----HHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCC
Confidence 65443 3344554444444444454443 3345678999999999998 56665
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.89 E-value=9.1e-08 Score=90.98 Aligned_cols=183 Identities=10% Similarity=-0.107 Sum_probs=101.0
Q ss_pred hhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcC
Q 004269 38 RTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKE 117 (764)
Q Consensus 38 r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 117 (764)
..|...+...|.+....+..+...+...|++++|+..|++..... +.+...+..+..++...|+++.|.+.+++..+..
T Consensus 28 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 28 EKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV 106 (228)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 445555555542223333335566666777777777777766654 3344556666677777777777777777776653
Q ss_pred ccccH-------HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC---hhhhHHHHHHHhccCCHHHHHHHHHHHhhc
Q 004269 118 IGLNN-------KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI---LPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 118 ~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+.+. ..|..+...+...|++++|+..|++..+. .|+ ...|..+...|...| ...++.+...
T Consensus 107 -p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~ 177 (228)
T 4i17_A 107 -PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSLGVLFYNNG-----ADVLRKATPL 177 (228)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGG
T ss_pred -CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhc
Confidence 2233 34666666666777777777777766543 233 345555555554433 2334444433
Q ss_pred CCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHH
Q 004269 188 MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKF 233 (764)
Q Consensus 188 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 233 (764)
+. .+...|.... ....+.+++|...++...+..|.+..+...+
T Consensus 178 ~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 220 (228)
T 4i17_A 178 AS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQ 220 (228)
T ss_dssp TT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 21 1233333322 2334556677777776666555554444433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.86 E-value=3.6e-07 Score=88.49 Aligned_cols=182 Identities=12% Similarity=-0.034 Sum_probs=117.7
Q ss_pred HHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCc-cccHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 004269 71 ASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI-GLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 71 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 149 (764)
|+..|+++...+ +++...+..+..++...|++++|++++.+.+..|- .-+...+..++..|.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777776654 34555555666777777888888888887766542 1355667777778888888888888888775
Q ss_pred hhcCCCC-----ChhhhHHHHHH--Hhc--cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHH
Q 004269 150 ERYGIYP-----ILPVYNSFLGA--CAK--LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 150 ~~~~~~~-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 220 (764)
+. .| +..+...|..+ ... .++..+|..+|+++.+. .|+..+-..++.++...|++++|.+.++.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 34 23334444444 222 23788888888887664 3443333444557777888888888887665
Q ss_pred hc----------CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 221 KH----------YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 221 ~~----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
+. .+.++.+...+|......|+ .|.+++.++.+ ..|+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~h 286 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEH 286 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCC
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCC
Confidence 53 25566677566666666666 67778887777 55554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=3e-07 Score=91.06 Aligned_cols=104 Identities=6% Similarity=-0.132 Sum_probs=74.7
Q ss_pred hhHHHHHHHhhcc-CCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHcc
Q 004269 228 FSLRKFVWSFTRL-RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT 306 (764)
Q Consensus 228 ~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 306 (764)
.+++.+..+|... |++++|+..|++..+.....+.. .....+|+.+...+.+.
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~--------------------------~~~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV--------------------------ALSNKCFIKCADLKALD 171 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh--------------------------HHHHHHHHHHHHHHHHh
Confidence 4566777888886 99999999999988732211110 00014788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcc------cHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004269 307 QNSGLAEQLMLQMQSLGLQPSSH------TYDGFIRAIVSDRGLRNGMEVLKIMQQN 357 (764)
Q Consensus 307 ~~~~~a~~~~~~m~~~g~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 357 (764)
|++++|+..|++........... +|..+..++...|++++|...|+...+.
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999998864322221 3556666777889999999988887764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.78 E-value=2.7e-07 Score=78.86 Aligned_cols=129 Identities=13% Similarity=-0.012 Sum_probs=87.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...|+.+...+. .+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHH
Confidence 34556666666777777777777665432 23445566666667777777777777777665432 2455666666667
Q ss_pred HhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
...|++++|.+.++.+.+..+.+..++..+..++...|++++|...|+++.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777777777777766666677777778888888888888888888776
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-06 Score=84.48 Aligned_cols=252 Identities=8% Similarity=-0.060 Sum_probs=166.4
Q ss_pred HHHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHH
Q 004269 13 IADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH 92 (764)
Q Consensus 13 ~~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (764)
-+....-.|.+..++ .=++ ++.|+.......-+.+++...|+++... ...|....+..
T Consensus 19 ~ikn~fy~G~yq~~i-~e~~------------~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~ 76 (310)
T 3mv2_B 19 NIKQNYYTGNFVQCL-QEIE------------KFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDL 76 (310)
T ss_dssp HHHHHHTTTCHHHHT-HHHH------------TSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHH
T ss_pred HHHHHHHhhHHHHHH-HHHH------------hcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHH
Confidence 455566778888887 2111 1222222233334568888888887521 11233333444
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC
Q 004269 93 ILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH 172 (764)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 172 (764)
+...+ ..+ +...+++..+.+ +++...+..+..++...|++++|++++.+......-.-+...+..++..+.+.|
T Consensus 77 la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~ 150 (310)
T 3mv2_B 77 YVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNN 150 (310)
T ss_dssp HHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCC
Confidence 44333 322 678888877765 556666678889999999999999999987543211135667888999999999
Q ss_pred CHHHHHHHHHHHhhcCCCC-----ChhhHHHHHHH--HHhhc--ChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCH
Q 004269 173 SMVHANLCLDLMDSRMVGK-----NEVTYTELLKL--AVWQK--NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p-----~~~t~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 243 (764)
+.+.|.+.++.|.+. .| +..+...+..+ ....| +...|..+|+++....+ +..+...++.++.+.|++
T Consensus 151 r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p-~~~~~~lLln~~~~~g~~ 227 (310)
T 3mv2_B 151 NVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP-TWKTQLGLLNLHLQQRNI 227 (310)
T ss_dssp CHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC-SHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC-CcccHHHHHHHHHHcCCH
Confidence 999999999999885 55 35666666666 33344 89999999999876554 433344455589999999
Q ss_pred HHHHHHHHHHHHhh--------ccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHH
Q 004269 244 KSAYETLQHMVALA--------MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQL 315 (764)
Q Consensus 244 ~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 315 (764)
++|.+.++.+.+.- ..|+.+ .+.-.+|......|+ +|.++
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~------------------------------~~LaN~i~l~~~lgk--~a~~l 275 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKP------------------------------TFLANQITLALMQGL--DTEDL 275 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHH------------------------------HHHHHHHHHHHHTTC--TTHHH
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCH------------------------------HHHHHHHHHHHHhCh--HHHHH
Confidence 99999999776531 124331 355444444444565 78888
Q ss_pred HHHHHHCCCCCCcc
Q 004269 316 MLQMQSLGLQPSSH 329 (764)
Q Consensus 316 ~~~m~~~g~~p~~~ 329 (764)
++++.+. .|+..
T Consensus 276 ~~qL~~~--~P~hp 287 (310)
T 3mv2_B 276 TNQLVKL--DHEHA 287 (310)
T ss_dssp HHHHHHT--TCCCH
T ss_pred HHHHHHh--CCCCh
Confidence 8888875 45543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.5e-07 Score=90.05 Aligned_cols=187 Identities=11% Similarity=0.036 Sum_probs=119.0
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccCCCCC---hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCc--cccHHHHHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLG---ADDFFHILNYCARSPDPLFVMETWRMMEEKEI--GLNNKCYLL 127 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ 127 (764)
..+......+...|++++|+..|+.+.... +.+ ...+..+..++.+.|+++.|...|++..+..- +.....+..
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 344455667778888888888888888765 223 45677777788888888888888888887631 122456667
Q ss_pred HHHHHHc--------cCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 004269 128 MMQALCK--------GGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTEL 199 (764)
Q Consensus 128 li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 199 (764)
+..++.. .|++++|+..|+++.+..+- +......+.. +...... -...+..+
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~--------------~~~~~~~----~~~~~~~l 154 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQK--------------IRELRAK----LARKQYEA 154 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHH--------------HHHHHHH----HHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHH--------------HHHHHHH----HHHHHHHH
Confidence 7777777 88888888888888765321 2222222111 0000000 00113445
Q ss_pred HHHHHhhcChhHHHHHHHHHHhcCCC---CHhhHHHHHHHhhcc----------CCHHHHHHHHHHHHHhhccCcc
Q 004269 200 LKLAVWQKNLSAVHEIWEDYIKHYSL---SIFSLRKFVWSFTRL----------RDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
...+...|++++|...|+.+++..+. ....+..+..+|... |++++|...|+++.+ ..|+.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~ 228 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDS 228 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCC
Confidence 55667777777777777777765443 344666666777655 788889888888887 44544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.8e-07 Score=89.66 Aligned_cols=169 Identities=7% Similarity=-0.037 Sum_probs=102.2
Q ss_pred hhhccccCCchhhh--hhhHHHHHHHHHhhCCcchHHHHHHhccccCC--CCChhcHHHHHHHhhC--------CCChhH
Q 004269 38 RTLTTTMGLNEESI--SKATQMQIVDALCRGERSRASHLLLNLGHAHH--SLGADDFFHILNYCAR--------SPDPLF 105 (764)
Q Consensus 38 r~~~~~~~~~p~~~--~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~--------~~~~~~ 105 (764)
..|...+...|... ...+..+...+...|++++|+..|+......+ +.....+..+..++.. .|+++.
T Consensus 36 ~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 115 (261)
T 3qky_A 36 EYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRK 115 (261)
T ss_dssp HHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHH
Confidence 55666666666532 34556667788999999999999999988642 1224456677777877 899999
Q ss_pred HHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHh
Q 004269 106 VMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMD 185 (764)
Q Consensus 106 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 185 (764)
|...|+++.+.. +.+......+. .+..+... -...+..+...|.+.|++++|+..|+.+.
T Consensus 116 A~~~~~~~l~~~-p~~~~~~~a~~--------------~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 116 AIEAFQLFIDRY-PNHELVDDATQ--------------KIRELRAK-----LARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHHHHHHHC-TTCTTHHHHHH--------------HHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCchhHHHHHH--------------HHHHHHHH-----HHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999874 22333332211 11111000 01123445556666677777777776666
Q ss_pred hcCCCC--ChhhHHHHHHHHHhh----------cChhHHHHHHHHHHhcCCCC
Q 004269 186 SRMVGK--NEVTYTELLKLAVWQ----------KNLSAVHEIWEDYIKHYSLS 226 (764)
Q Consensus 186 ~~g~~p--~~~t~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~ 226 (764)
+..+.. ....+..+..++... |++++|...++.+.+..|.+
T Consensus 176 ~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 176 DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 543221 123445555555544 66677777777776655444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.74 E-value=3.9e-07 Score=77.86 Aligned_cols=130 Identities=12% Similarity=-0.008 Sum_probs=112.3
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhc
Q 004269 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 239 (764)
.|..+...+...|++++|..+|+.+.+... .+..++..+...+...|+++.|...++.+.+..+.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 567788899999999999999999987643 3667788888889999999999999999998878888899999999999
Q ss_pred cCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHH
Q 004269 240 LRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQM 319 (764)
Q Consensus 240 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 319 (764)
.|++++|.+.++.+.+. .|+. ...|..+...+...|++++|...|+++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRS------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTC------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCC------------------------------hHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 99999999999999873 3332 147888999999999999999999998
Q ss_pred HHC
Q 004269 320 QSL 322 (764)
Q Consensus 320 ~~~ 322 (764)
...
T Consensus 130 ~~~ 132 (136)
T 2fo7_A 130 LEL 132 (136)
T ss_dssp HHH
T ss_pred Hcc
Confidence 864
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-06 Score=83.17 Aligned_cols=191 Identities=11% Similarity=0.031 Sum_probs=108.4
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCc-cc-cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh-hhhHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEI-GL-NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL-PVYNS 163 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~ 163 (764)
+..+..+...+...|+++.|...|+++.+... .| ....+..+..+|.+.|++++|+..|+++.+..+-.+.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 33444555566667777777777777776531 11 13456666777777777777777777776543222221 12333
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhH-------------
Q 004269 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSL------------- 230 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------- 230 (764)
+..++.+.+.. .++ .|..+-..+...|+.++|...|+.+++..|.+..++
T Consensus 84 ~g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 84 RGLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence 33333321100 000 000000111123344444444444444333333222
Q ss_pred ----HHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHcc
Q 004269 231 ----RKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT 306 (764)
Q Consensus 231 ----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 306 (764)
..+...|.+.|+++.|...|+.+.+ ..|+.+.. ...+..+..++.+.
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~---------------------------~~a~~~l~~~~~~~ 197 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLR--DYPDTQAT---------------------------RDALPLMENAYRQM 197 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTSHHH---------------------------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHH--HCcCCCcc---------------------------HHHHHHHHHHHHHc
Confidence 3456678899999999999999988 44443211 13688899999999
Q ss_pred CCHHHHHHHHHHHHHCC
Q 004269 307 QNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 307 ~~~~~a~~~~~~m~~~g 323 (764)
|++++|.+.++.+...+
T Consensus 198 g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 198 QMNAQAEKVAKIIAANS 214 (225)
T ss_dssp TCHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHHHHhhC
Confidence 99999999999988864
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=3.2e-07 Score=90.91 Aligned_cols=203 Identities=7% Similarity=-0.024 Sum_probs=148.2
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhcccc----CCCC-ChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCc---cc--cH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHA----HHSL-GADDFFHILNYCARSPDPLFVMETWRMMEEKEI---GL--NN 122 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~--~~ 122 (764)
..+......+...|++++|+..|.+.... +.++ ...+|+.+..+|...|+++.|+..+++..+... .+ -.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34444566688899999999999887653 2112 246789999999999999999999998876421 11 14
Q ss_pred HHHHHHHHHHHcc-CCHHHHHHHHHHHhhhcCCCCC----hhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChh---
Q 004269 123 KCYLLMMQALCKG-GYLEEASNLIYFLGERYGIYPI----LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV--- 194 (764)
Q Consensus 123 ~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--- 194 (764)
.+++.+...|... |++++|+..|++..+...-..+ ..+++.+...+.+.|++++|+..|+......+.....
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788899999996 9999999999987653211111 3468889999999999999999999998865443221
Q ss_pred ---hHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCH-----hhHHHHHHHhh--ccCCHHHHHHHHHHHHH
Q 004269 195 ---TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI-----FSLRKFVWSFT--RLRDLKSAYETLQHMVA 255 (764)
Q Consensus 195 ---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~li~~~~--~~g~~~~A~~~~~~~~~ 255 (764)
+|..+..++...|+++.|...++...+..+... ..+..++..+. ..+++++|+..|+.+.+
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 567777788899999999999999987432221 23445566664 45678888888877654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.3e-07 Score=102.34 Aligned_cols=158 Identities=14% Similarity=0.003 Sum_probs=137.2
Q ss_pred hCCCChhHHHHHHHHHH--------HcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004269 98 ARSPDPLFVMETWRMME--------EKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 98 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 169 (764)
...|++++|.+.+++.. +.. +.+...+..+...|...|++++|+..|++..+.+ +.+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 67899999999999998 432 4567788899999999999999999999997654 345678899999999
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHH
Q 004269 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYET 249 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 249 (764)
+.|++++|+..|+...+..+. +...+..+..++...|++++ .+.|++..+..+.+..++..+..++.+.|++++|...
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999886433 66788889899999999999 9999999998889999999999999999999999999
Q ss_pred HHHHHHhhccCcc
Q 004269 250 LQHMVALAMMGKL 262 (764)
Q Consensus 250 ~~~~~~~~~~~~~ 262 (764)
|++..+ ..|+.
T Consensus 557 ~~~al~--l~P~~ 567 (681)
T 2pzi_A 557 LDEVPP--TSRHF 567 (681)
T ss_dssp HHTSCT--TSTTH
T ss_pred HHhhcc--cCccc
Confidence 999877 55554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=9.2e-07 Score=87.19 Aligned_cols=169 Identities=6% Similarity=-0.121 Sum_probs=137.9
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHH
Q 004269 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTE 198 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 198 (764)
+.+...+..+...+...|++++|...|++..+.+ +.+...+..+...+.+.|++++|...|+..... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH
Confidence 5566677788889999999999999999997654 335668889999999999999999999998775 345443332
Q ss_pred HH-HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccccccc
Q 004269 199 LL-KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277 (764)
Q Consensus 199 ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (764)
.. ..+...++.+.|.+.++...+..|.+...+..+..++...|++++|...|.++.+. .|+...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~------------- 254 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAAD------------- 254 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGG-------------
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--cccccc-------------
Confidence 22 23667888899999999999989999999999999999999999999999999983 443210
Q ss_pred CCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
...+..+...+...|+.++|...|++-..
T Consensus 255 ---------------~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 255 ---------------GQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp ---------------GHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ---------------chHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 14889999999999999999998887653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.64 E-value=3.5e-05 Score=81.88 Aligned_cols=125 Identities=10% Similarity=0.086 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004269 510 PTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCS-IIRCFKSASALVSMMVRDGFYPQTMTYTALIKI 588 (764)
Q Consensus 510 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 588 (764)
..|-..+....+.++.+.|..+|+.. ... ..+...|......-. ..++.+.|..+|+...+.. +-++..|...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 35666666666677788888888877 321 123344432221111 2336888888888777642 2234456667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004269 589 LLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 589 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
..+.|+.+.|..+|+++. .....|...+..=...|+.+.+.++++++..
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777888888888888852 2466777777766777888888887777664
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.5e-07 Score=103.33 Aligned_cols=174 Identities=7% Similarity=-0.116 Sum_probs=146.9
Q ss_pred HhhCCcchHHHHHHhcc--------ccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004269 63 LCRGERSRASHLLLNLG--------HAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 63 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 134 (764)
...|++++|++.|+... ... +.+...+..+..++...|+++.|.+.+++..+.+ +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999987 433 4556678888889999999999999999999875 4577899999999999
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHH
Q 004269 135 GGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHE 214 (764)
Q Consensus 135 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 214 (764)
.|++++|+..|++..+.+ +.+...|..+..+|.+.|++++ +..|+...+..+. +...|..+..++...|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999987654 3356688999999999999999 9999999886433 66788899999999999999999
Q ss_pred HHHHHHhcCCCCHhhHHHHHHHhhccCC
Q 004269 215 IWEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
.|++..+..+.+..++..+..++...++
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999988778888899999999877665
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.60 E-value=6.3e-07 Score=81.02 Aligned_cols=161 Identities=11% Similarity=-0.047 Sum_probs=98.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH-HHh
Q 004269 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL-AVW 205 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~ 205 (764)
.+...+...|++++|...|++..+.+ +.+...+..+...+.+.|++++|+..|+...... |+...+..+... +..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44455566666666666666654432 2234456666666666666666666666655432 222222211111 112
Q ss_pred hcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCc
Q 004269 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (764)
.++...+...++...+..|.+...+..+..++...|++++|...|+++.+. .|+...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~--------------------- 143 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV--NLGAQD--------------------- 143 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTTTT---------------------
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CcccCh---------------------
Confidence 223344667777777767777888888888888888888888888888773 332100
Q ss_pred cccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 286 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
...+..+...+...|+.++|...|++...
T Consensus 144 -------~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 144 -------GEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp -------THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 03677788888888888888888877653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.60 E-value=2.5e-05 Score=82.98 Aligned_cols=206 Identities=6% Similarity=-0.070 Sum_probs=112.5
Q ss_pred hCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCC-hhHHHHHHHHHHHc-Cc-cccHHHHHHHHHHHH----ccCC
Q 004269 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPD-PLFVMETWRMMEEK-EI-GLNNKCYLLMMQALC----KGGY 137 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~-~~-~~~~~~~~~li~~~~----~~g~ 137 (764)
.++.+.+..+|+.....- |+...|...++...+.++ .+....+|+..+.. |. ..+...|...+..+. ..|+
T Consensus 27 ~~~~e~~~~iferal~~~--ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 27 SKDYRSLESLFGRCLKKS--YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TTCHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 377888888888877643 577777777766655442 34566777776654 32 335567777776543 2456
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHH
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWE 217 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (764)
++.+.++|++... +++. .+..+-..|.. +... .+..+...++... .+.+..|..+++
T Consensus 105 ~~~vR~iy~rAL~---~P~~--~~~~lw~~Y~~-------------fE~~---~~~~~~~~~~~~~--~~~y~~ar~~y~ 161 (493)
T 2uy1_A 105 IEKIRNGYMRALQ---TPMG--SLSELWKDFEN-------------FELE---LNKITGKKIVGDT--LPIFQSSFQRYQ 161 (493)
T ss_dssp HHHHHHHHHHHHT---SCCT--THHHHHHHHHH-------------HHHH---HCHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---Chhh--hHHHHHHHHHH-------------HHHH---hccccHHHHHHHH--hHHHHHHHHHHH
Confidence 7778888887764 1211 12222222211 1110 0111111122111 123344444444
Q ss_pred HHHhcCC-CCHhhHHHHHHHhhcc--C-----CHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccc
Q 004269 218 DYIKHYS-LSIFSLRKFVWSFTRL--R-----DLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289 (764)
Q Consensus 218 ~~~~~~~-~~~~~~~~li~~~~~~--g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (764)
.+....+ .+...|...+..-... | ..+.+..+|+++.... |..
T Consensus 162 ~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~--p~~--------------------------- 212 (493)
T 2uy1_A 162 QIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF--YYA--------------------------- 212 (493)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTC---------------------------
T ss_pred HHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC--CCC---------------------------
Confidence 4443211 1334555554443221 1 1345667888877632 322
Q ss_pred hhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc
Q 004269 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330 (764)
Q Consensus 290 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 330 (764)
...|-..+.-+.+.|+.+.|..+|++.... |....
T Consensus 213 ---~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~ 247 (493)
T 2uy1_A 213 ---EEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMF 247 (493)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSH
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHH
Confidence 147888888888999999999999999986 55543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.60 E-value=8.2e-07 Score=82.80 Aligned_cols=162 Identities=7% Similarity=-0.058 Sum_probs=102.9
Q ss_pred HHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHH----------------HHHHhhCCCChhHHHHHHHHHHHcCc
Q 004269 55 TQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFH----------------ILNYCARSPDPLFVMETWRMMEEKEI 118 (764)
Q Consensus 55 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~m~~~~~ 118 (764)
+......+...|++++|+..|+...... |-++..+.. +..++.+.|+++.|...+++.++.+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA- 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 3445666888999999999999988765 223444555 6667777778888888887777764
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC--HHHHHHHHHHHhhcCCCCChhhH
Q 004269 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS--MVHANLCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~ 196 (764)
+.+...+..+...|...|++++|+..|++..+.+ +.+...|..+...|...|+ ...+...++.... +.|....+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 4466677777777777788888888877776543 2345566666666654443 3334444444322 22222333
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHhc
Q 004269 197 TELLKLAVWQKNLSAVHEIWEDYIKH 222 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 222 (764)
.....++...|++++|...|++.++.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33444455667777777777777654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.59 E-value=9.4e-07 Score=88.22 Aligned_cols=204 Identities=12% Similarity=0.002 Sum_probs=112.3
Q ss_pred hCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHH
Q 004269 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL 144 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 144 (764)
.|++++|.+++++..+... . .+ +...++++.|...|.+. ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~--~~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--T--SF------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--C--CS------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--c--cc------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4666777777776654321 1 00 11146677777766654 3456677888888777
Q ss_pred HHHHhhhc---CCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCC---CC--ChhhHHHHHHHHHhhcChhHHHHH
Q 004269 145 IYFLGERY---GIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMV---GK--NEVTYTELLKLAVWQKNLSAVHEI 215 (764)
Q Consensus 145 ~~~m~~~~---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~~~~~~~a~~~ 215 (764)
|.+..+.. +-++ -..+|+.+...|.+.|++++|+..|+.....-. .| -..++..+-..|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 77664321 1000 123566677777777777777777766543210 01 12345555555555 666666666
Q ss_pred HHHHHhcCCC------CHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccc
Q 004269 216 WEDYIKHYSL------SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVM 289 (764)
Q Consensus 216 ~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (764)
+++..+..+. ...+++.+..+|...|++++|+..|++..+........
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------- 191 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY-------------------------- 191 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------------------
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh--------------------------
Confidence 6666542111 13456666666777777777777777666521111100
Q ss_pred hhhhhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004269 290 KVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 290 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 320 (764)
......+..+..++...|++++|...|++..
T Consensus 192 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 192 PTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 0001245555556666677777777666665
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=4.5e-07 Score=79.37 Aligned_cols=143 Identities=6% Similarity=-0.174 Sum_probs=86.8
Q ss_pred HhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHH
Q 004269 96 YCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMV 175 (764)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 175 (764)
.+...|+++.|++.+....... +.+...+-.+...|.+.|++++|++.|++..+.+ +-+...|..+..+|.+.|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchH
Confidence 3444466666666666655442 2233445556666777777777777777665443 234556666777777777777
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHH-HHHHHhcCCCCHhhHHHHHHHhhccCC
Q 004269 176 HANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEI-WEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
+|+..|+...+..+. +..++..+...+...|+.+++... ++...+-.|.++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777776664322 455666666667777776655443 466666666666666666666655553
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-06 Score=81.00 Aligned_cols=74 Identities=9% Similarity=-0.024 Sum_probs=33.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhh
Q 004269 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (764)
+..+|.+.|++++|+..|+...+..+. +...+..+...+...|++++|...|++.++..|.+..++..+..+|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 444444445555555555444443211 33344444444444444444444444444444444444444444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.57 E-value=5.7e-07 Score=81.33 Aligned_cols=157 Identities=9% Similarity=-0.025 Sum_probs=75.1
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH-HHccCC
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA-LCKGGY 137 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~ 137 (764)
...+...|++++|+..|+...... |-+...+..+..++...|++++|...+++..+.. |+...+..+... +...+.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAA 89 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcc
Confidence 344555555555555555555433 2333445555555555555555555555554432 122222211111 111112
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhhcChhHHHHHH
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGK-NEVTYTELLKLAVWQKNLSAVHEIW 216 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~ 216 (764)
..+|+..|++..+.. +.+...+..+...+...|++++|...|+.+.+..+.+ +...+..+...+...|+.++|...|
T Consensus 90 ~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 90 ESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp SCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 223455555554332 1234455555556666666666666666655543322 2345555555566666666666655
Q ss_pred HHHH
Q 004269 217 EDYI 220 (764)
Q Consensus 217 ~~~~ 220 (764)
+..+
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.56 E-value=9.1e-06 Score=80.41 Aligned_cols=212 Identities=8% Similarity=-0.042 Sum_probs=144.9
Q ss_pred HHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHH---HHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 004269 75 LLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNK---CYLLMMQALCKGGYLEEASNLIYFLGER 151 (764)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 151 (764)
+..+......|+..+...+...+.-.- + .++. .....+.. .+...+..+...|++++|..++++..+.
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~--~---~~~~----~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPI--I---HFYE----VLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCT--H---HHHH----TTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCH--H---HHhC----CCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 344433334677777777777665331 1 1221 11122222 3334467788999999999999998764
Q ss_pred cCCCCChh----hhHHHHHHHhccCCHHHHHHHHHHHhhcCCC-CC----hhhHHHHHHHHHhhcChhHHHHHHHHHHhc
Q 004269 152 YGIYPILP----VYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KN----EVTYTELLKLAVWQKNLSAVHEIWEDYIKH 222 (764)
Q Consensus 152 ~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 222 (764)
....|+.. .+..+...+...+++++|+..|+........ ++ ..+++.+...|...|++++|...++.+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 43334421 3445777778888999999999999874322 22 226888888999999999999999999852
Q ss_pred ---CCC----CHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhh
Q 004269 223 ---YSL----SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWS 295 (764)
Q Consensus 223 ---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (764)
.+. ...++..+..+|.+.|++++|...+++..+.....+... ....+
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~--------------------------~~~~~ 238 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA--------------------------LIGQL 238 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT--------------------------THHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH--------------------------HHHHH
Confidence 211 234788999999999999999999999887432222100 00258
Q ss_pred HHHHHHHHHccCC-HHHHHHHHHHHHH
Q 004269 296 FSDVIHACGRTQN-SGLAEQLMLQMQS 321 (764)
Q Consensus 296 ~~~li~~~~~~~~-~~~a~~~~~~m~~ 321 (764)
|..+..++.+.|+ +++|.+.|++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999999995 6999999988764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=5e-07 Score=79.07 Aligned_cols=130 Identities=6% Similarity=-0.171 Sum_probs=106.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhc
Q 004269 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (764)
|...+...|++++|+..++...... +.+...+-.+...|.+.|++++|++.|+...+..+. +..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 4456677889999999999875432 223446677899999999999999999999886433 6788999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHH-HHHHHHhhccCcc
Q 004269 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYET-LQHMVALAMMGKL 262 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~ 262 (764)
++++|...|+...+..|.+..++..+..+|.+.|+.++|.+. +++..+ +.|+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~ 133 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGS 133 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCC
Confidence 999999999999998888999999999999999998776655 588877 66765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.53 E-value=5.1e-06 Score=78.51 Aligned_cols=181 Identities=10% Similarity=-0.047 Sum_probs=124.6
Q ss_pred hHHHHHHHHHhhCCcchHHHHHHhccccCCC-C-ChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccH---HHHHHH
Q 004269 54 ATQMQIVDALCRGERSRASHLLLNLGHAHHS-L-GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNN---KCYLLM 128 (764)
Q Consensus 54 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l 128 (764)
.+......+...|++++|+..|+.+...... + ....+..+..++.+.|+++.|+..|+++.+..- .+. ..+..+
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-~~~~~~~a~~~~ 84 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-THPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCcHHHHHHHH
Confidence 3445567789999999999999999876521 1 135677888899999999999999999998742 122 244445
Q ss_pred HHHHHc------------------cCCHHHHHHHHHHHhhhcCCCCCh-hhhHHHHHHHhccCCHHHHHHHHHHHhhcCC
Q 004269 129 MQALCK------------------GGYLEEASNLIYFLGERYGIYPIL-PVYNSFLGACAKLHSMVHANLCLDLMDSRMV 189 (764)
Q Consensus 129 i~~~~~------------------~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 189 (764)
..++.. .|++++|...|+++.+.+ |+. ..+...... ..+...+.
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHH----------HHHHHHHH----
Confidence 555543 467777777777776543 222 222211110 00000000
Q ss_pred CCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCH---hhHHHHHHHhhccCCHHHHHHHHHHHHHh
Q 004269 190 GKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSI---FSLRKFVWSFTRLRDLKSAYETLQHMVAL 256 (764)
Q Consensus 190 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 256 (764)
.....+...+...|+++.|...|+.+++..|.+. .++..+..+|.+.|+.++|.+.++.+...
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 0112445668889999999999999998776665 56888999999999999999999988873
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.53 E-value=4.8e-06 Score=83.03 Aligned_cols=203 Identities=9% Similarity=-0.077 Sum_probs=140.4
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHH
Q 004269 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (764)
.|++++|.+++++..+.. +.. .+...+++++|...|++. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHH
Confidence 466778888888777642 111 122257888888887755 345677899999999
Q ss_pred HHHHHhhcCCC----C-ChhhHHHHHHHHHhhcChhHHHHHHHHHHhcC----CC--CHhhHHHHHHHhhccCCHHHHHH
Q 004269 180 CLDLMDSRMVG----K-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKHY----SL--SIFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 180 ~~~~m~~~g~~----p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~~li~~~~~~g~~~~A~~ 248 (764)
.|......... + -..+|..+...|...|++++|...+++..+.. .+ -..++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 99877653111 1 13477888888999999999999999887631 11 24578888889988 99999999
Q ss_pred HHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC----C
Q 004269 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG----L 324 (764)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~ 324 (764)
.|++..+........ .....+++.+...|.+.|++++|+..|++..... .
T Consensus 137 ~~~~Al~~~~~~~~~--------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 190 (307)
T 2ifu_A 137 LYQQAAAVFENEERL--------------------------RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN 190 (307)
T ss_dssp HHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCh--------------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 999988732221110 0002578889999999999999999999887531 1
Q ss_pred CCC-cccHHHHHHHHHhcCChhHHHHHHHHHH
Q 004269 325 QPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 325 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 355 (764)
.++ ..++..+...+...|++++|...|++..
T Consensus 191 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 191 YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 111 1144455555666788888888888877
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=86.50 Aligned_cols=167 Identities=7% Similarity=-0.142 Sum_probs=136.1
Q ss_pred CCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHH
Q 004269 84 SLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNS 163 (764)
Q Consensus 84 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 163 (764)
+.+...+..+...+...|+++.|.+.+++..+.. +.+...+..+...|...|++++|...++++... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHH
Confidence 3455667777788889999999999999999875 457788899999999999999999999988654 344433322
Q ss_pred -HHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCC--HhhHHHHHHHhhcc
Q 004269 164 -FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS--IFSLRKFVWSFTRL 240 (764)
Q Consensus 164 -li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~ 240 (764)
....+.+.++.++|...|+......+ .+...+..+...+...|++++|.+.+..+.+..+.+ ...+..++.++...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 22336677888889999999887643 367788888999999999999999999999876655 78999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 004269 241 RDLKSAYETLQHMVA 255 (764)
Q Consensus 241 g~~~~A~~~~~~~~~ 255 (764)
|+.+.|...|++...
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999888664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.1e-05 Score=75.84 Aligned_cols=152 Identities=6% Similarity=-0.032 Sum_probs=97.8
Q ss_pred cChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHH--HHHHHHHHHHHhhccCcchhcccccccccccccCCCccCC
Q 004269 207 KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK--SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLN 284 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (764)
++++++..+++.+.+..+-+..+|+.-..++.+.|.++ ++++.++++.+......
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~----------------------- 180 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNN----------------------- 180 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCH-----------------------
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCH-----------------------
Confidence 45566666666666666667777777666666777666 78888888877332222
Q ss_pred ccccchhhhhhHHHHHHHHHccCC------HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCCh-hHHHHHHHHHHHC
Q 004269 285 ALPVMKVLRWSFSDVIHACGRTQN------SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGL-RNGMEVLKIMQQN 357 (764)
Q Consensus 285 ~~~~~~~~~~~~~~li~~~~~~~~------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~ 357 (764)
.+|+.-...+...+. ++++++.++++..... -|...|+.+-..+.+.|+. +.+..+...+.+.
T Consensus 181 ---------sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 250 (306)
T 3dra_A 181 ---------SAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL 250 (306)
T ss_dssp ---------HHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred ---------HHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 366665555555555 7888888888887643 2566777777777676664 3355565555543
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004269 358 N--LKPQDSTIATLSVECSKALELDLAEALLDQISR 391 (764)
Q Consensus 358 ~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 391 (764)
+ -..+...+..+.+.|.+.|+.++|.++++.+..
T Consensus 251 ~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 251 EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 3 122455666777777777777777777777664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.1e-05 Score=75.87 Aligned_cols=152 Identities=10% Similarity=0.015 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChh--HHHHHHHHHHhcCCCCHhhHHHHHHHhhccCC------H
Q 004269 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS--AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD------L 243 (764)
Q Consensus 172 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~ 243 (764)
+++++++.+++.+.+..++ +..+|+.-.-.+...+.++ ++.+.++.+.+..+.|..+|+....++.+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 3444444444444443222 3344444333344444444 45555555555445555555544444444444 5
Q ss_pred HHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHH-HHHHHHHHHHC
Q 004269 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGL-AEQLMLQMQSL 322 (764)
Q Consensus 244 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~ 322 (764)
+++++.++.+.+ ..|+. ...|+-+-..+.+.|+... +..+..+..+.
T Consensus 203 ~eEl~~~~~aI~--~~p~n------------------------------~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 250 (306)
T 3dra_A 203 DEELNYVKDKIV--KCPQN------------------------------PSTWNYLLGIHERFDRSITQLEEFSLQFVDL 250 (306)
T ss_dssp HHHHHHHHHHHH--HCSSC------------------------------HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred HHHHHHHHHHHH--hCCCC------------------------------ccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 556666555555 33332 1355555555555554322 33344443332
Q ss_pred C--CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 323 G--LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 323 g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
+ -..+...+..+...+.+.|+.++|.++++.+.+
T Consensus 251 ~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 251 EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 1 012344555555666666666666666666654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.49 E-value=6.3e-06 Score=76.92 Aligned_cols=178 Identities=10% Similarity=-0.079 Sum_probs=134.9
Q ss_pred chHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC----CHHHHHHH
Q 004269 69 SRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG----YLEEASNL 144 (764)
Q Consensus 69 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~ 144 (764)
.+|++.|++..+.| ++..+..+...+...++++.|.+.|++..+.| ++..+..|...|.. + ++++|.++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677777777654 56667777777777889999999999988876 56677777777877 6 89999999
Q ss_pred HHHHhhhcCCCCChhhhHHHHHHHhc----cCCHHHHHHHHHHHhhcCCC-CChhhHHHHHHHHHh----hcChhHHHHH
Q 004269 145 IYFLGERYGIYPILPVYNSFLGACAK----LHSMVHANLCLDLMDSRMVG-KNEVTYTELLKLAVW----QKNLSAVHEI 215 (764)
Q Consensus 145 ~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~----~~~~~~a~~~ 215 (764)
|++..+. -+...+..|...|.. .+++++|+..|+...+.|.. .+..++..|-..|.. .+++++|...
T Consensus 76 ~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 76 AEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9888643 255677778888877 78999999999988876532 125677777777777 7789999999
Q ss_pred HHHHHhcCCCCHhhHHHHHHHhhcc-C-----CHHHHHHHHHHHHHhhc
Q 004269 216 WEDYIKHYSLSIFSLRKFVWSFTRL-R-----DLKSAYETLQHMVALAM 258 (764)
Q Consensus 216 ~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~~~~~~~ 258 (764)
|+...+. +.+..++..|..+|... | +.++|...|+...+.|.
T Consensus 152 ~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 152 FKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9988775 45566777788777643 3 89999999999988653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-06 Score=94.84 Aligned_cols=165 Identities=7% Similarity=-0.128 Sum_probs=119.1
Q ss_pred hCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHH
Q 004269 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL 144 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 144 (764)
.|++++|++.|++..+.. +-+...+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477889999999887765 4456778888888888999999999999998875 45677888999999999999999999
Q ss_pred HHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhh---cChhHHHHHHHHHHh
Q 004269 145 IYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ---KNLSAVHEIWEDYIK 221 (764)
Q Consensus 145 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~ 221 (764)
|++..+.. +.+...+..+...|.+.|++++|.+.|+...+.... +...+..+...+... |+.++|.+.+++..+
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99887653 335668888999999999999999999998876432 567788888888888 999999999999988
Q ss_pred cCCCCHhhHHHHH
Q 004269 222 HYSLSIFSLRKFV 234 (764)
Q Consensus 222 ~~~~~~~~~~~li 234 (764)
..+.+...+..+.
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 6665555554443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=3.7e-06 Score=92.11 Aligned_cols=154 Identities=10% Similarity=-0.091 Sum_probs=119.8
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHH
Q 004269 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (764)
.|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...|..+...|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 368889999999988764 4467889999999999999999999999987643 3456788999999999999999999
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc---CCHHHHHHHHHHHHHh
Q 004269 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL---RDLKSAYETLQHMVAL 256 (764)
Q Consensus 180 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~ 256 (764)
.|+...+.... +...+..+..++...|++++|.+.++...+..+.+...+..+..++... |+.++|.+.+++..+.
T Consensus 79 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999886432 5678889999999999999999999999998888899999999999999 9999999999999884
Q ss_pred h
Q 004269 257 A 257 (764)
Q Consensus 257 ~ 257 (764)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.6e-05 Score=74.15 Aligned_cols=175 Identities=10% Similarity=-0.009 Sum_probs=132.0
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhC----ChhHHHHHHHHHH
Q 004269 496 LIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIR----CFKSASALVSMMV 571 (764)
Q Consensus 496 a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~ 571 (764)
|.+.|++.-...+...+..+...|...+++++|+..|++..+.| +...+..+-..|.. + ++++|..+|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 44445444334577788888888888999999999999998876 55666666666766 6 8999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 004269 572 RDGFYPQTMTYTALIKILLD----YGDFDEALNLLDLVSLEGIP-HDVLLYNTILKKACE----KGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 572 ~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~ 642 (764)
+.| +...+..|...|.. .+++++|.++|++..+.|.. .++..+..|...|.. .++.++|..+|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 865 56677778888877 78999999999998865421 026788888888888 8899999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHhh
Q 004269 643 NKVQPDPSTCHFVFSGYVNC-G-----FHNSAMEALQVLSMRM 679 (764)
Q Consensus 643 ~~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~ 679 (764)
. ..+...+..|-..|... | ++++|.+.++.--..+
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5 23444555566666543 3 8999999998665544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.9e-05 Score=75.07 Aligned_cols=173 Identities=8% Similarity=-0.022 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHhhcCCC---CC--
Q 004269 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDSRMVG---KN-- 192 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~-- 192 (764)
...+...+..+...|++++|.+.++...+.....++. ..+..+...+...|++++|+..|+........ +.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3455567788899999999999998776533221111 22444666678889999999999988753221 11
Q ss_pred hhhHHHHHHHHHhhcChhHHHHHHHHHHh---cCCCC----HhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhc
Q 004269 193 EVTYTELLKLAVWQKNLSAVHEIWEDYIK---HYSLS----IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYIN 265 (764)
Q Consensus 193 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 265 (764)
..+++.+...|...|++++|...+++..+ ..+.+ ..++..+..+|...|++++|...+++..+.....+...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~- 233 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA- 233 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH-
Confidence 34788888899999999999999999884 23332 25889999999999999999999999887432211100
Q ss_pred ccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHH-HHHHHHHH
Q 004269 266 RTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLA-EQLMLQMQ 320 (764)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a-~~~~~~m~ 320 (764)
....+|..+...|...|++++| ...+++..
T Consensus 234 -------------------------~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 234 -------------------------LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp -------------------------SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 0025888899999999999999 77777765
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.34 E-value=4.9e-05 Score=75.08 Aligned_cols=163 Identities=7% Similarity=-0.064 Sum_probs=117.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHH----HHHHHHHHHHhhCChhHHHHHHHHHHHCCCC-CC----HHHHH
Q 004269 514 TVLHSLVEAQESHRAMEIFKQMKTCG-IPPNAA----TYNIMIDCCSIIRCFKSASALVSMMVRDGFY-PQ----TMTYT 583 (764)
Q Consensus 514 ~li~~~~~~~~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-p~----~~~~~ 583 (764)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...++.+.+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788889999999998887643 122321 2334566667778999999999988874222 22 33688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHH
Q 004269 584 ALIKILLDYGDFDEALNLLDLVSL----E-GIPHD-VLLYNTILKKACEKGRIDVIEFIIEQMHQN----KVQPD-PSTC 652 (764)
Q Consensus 584 ~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~ 652 (764)
.+...|...|++++|...++++.+ . +..+. ..+|..+...|.+.|++++|...+++.++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999998873 1 22222 347888999999999999999999887752 32333 4566
Q ss_pred HHHHHHHHhcC-ChHHHHHHHHHHH
Q 004269 653 HFVFSGYVNCG-FHNSAMEALQVLS 676 (764)
Q Consensus 653 ~~ll~~~~~~g-~~~~a~~~~~~~~ 676 (764)
..+-.+|.+.| ++++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 66667889999 4699999888754
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.9e-05 Score=73.68 Aligned_cols=143 Identities=8% Similarity=-0.036 Sum_probs=90.9
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc
Q 004269 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 240 (764)
+..+...+...|++++|+..|+.. +.|+...+..+...+...|++++|...++...+..+.+..++..+..+|...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 334445555566666666666544 2345556666666666666666666666666666666677777788888888
Q ss_pred CCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004269 241 RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 241 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 320 (764)
|++++|...|++..+. .|+...... . .. ...........|..+..++...|++++|...|++..
T Consensus 85 ~~~~~A~~~~~~al~~--~~~~~~~~~-----~--~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQ--LRGNQLIDY-----K--IL-------GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp TCHHHHHHHHHHHHHT--TTTCSEEEC-----G--GG-------TBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCccHHHH-----H--Hh-------ccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888888888773 232200000 0 00 000000002578889999999999999999999999
Q ss_pred HCC
Q 004269 321 SLG 323 (764)
Q Consensus 321 ~~g 323 (764)
+..
T Consensus 149 ~~~ 151 (213)
T 1hh8_A 149 SMK 151 (213)
T ss_dssp TTC
T ss_pred HcC
Confidence 753
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.29 E-value=4.7e-05 Score=70.98 Aligned_cols=131 Identities=10% Similarity=0.065 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004269 512 YNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD 591 (764)
Q Consensus 512 ~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 591 (764)
+..+...+...|++++|+..|++.. .|+...+..+...+...|++++|...|+...+.. +.+...|..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444556666777777777776653 4566777777777777777777777777777653 2356667777778888
Q ss_pred cCCHHHHHHHHHHHHHCC--------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004269 592 YGDFDEALNLLDLVSLEG--------------IPH-DVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP 649 (764)
Q Consensus 592 ~g~~~~A~~~~~~m~~~~--------------~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 649 (764)
.|++++|.+.|++..+.. ..| ....+..+...|.+.|++++|.+.+++..+ ..|+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc
Confidence 888888888888777532 111 226777788888888888888888888885 44554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00023 Score=70.46 Aligned_cols=184 Identities=8% Similarity=-0.037 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhh-c-ChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHH-------
Q 004269 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQ-K-NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK------- 244 (764)
Q Consensus 174 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~------- 244 (764)
+++++..++.+....++ +..+|+.--..+... + +++++.++++.+.+..+.+..+|+.-..++.+.|.++
T Consensus 105 l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~ 183 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQW 183 (349)
T ss_dssp HHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhH
Confidence 44555555554443222 333343333333333 3 4455555555555555555555555555554444444
Q ss_pred -HHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCC-------HHHHHHHH
Q 004269 245 -SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN-------SGLAEQLM 316 (764)
Q Consensus 245 -~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~ 316 (764)
++++.++++.+...... .+|+.....+.+.++ ++++++.+
T Consensus 184 ~eELe~~~k~I~~dp~N~--------------------------------SAW~~R~~lL~~l~~~~~~~~~~~eELe~~ 231 (349)
T 3q7a_A 184 GSELDWCNEMLRVDGRNN--------------------------------SAWGWRWYLRVSRPGAETSSRSLQDELIYI 231 (349)
T ss_dssp HHHHHHHHHHHHHCTTCH--------------------------------HHHHHHHHHHTTSTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCH--------------------------------HHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 88899999988433322 488887777777775 68899999
Q ss_pred HHHHHCCCCCCcccHHHHHHHHHhcCCh--------------------hHHHHHHHHHHHCC-----CCCCHHHHHHHHH
Q 004269 317 LQMQSLGLQPSSHTYDGFIRAIVSDRGL--------------------RNGMEVLKIMQQNN-----LKPQDSTIATLSV 371 (764)
Q Consensus 317 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~~~~~~~~~~li~ 371 (764)
++...... -|...|+-+-..+.+.|.. ....+...++...+ -.+.+.....|++
T Consensus 232 ~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d 310 (349)
T 3q7a_A 232 LKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLAD 310 (349)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHH
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHH
Confidence 88887542 2555666655555555543 11222222221111 0134444556666
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 004269 372 ECSKALELDLAEALLDQISR 391 (764)
Q Consensus 372 ~~~~~g~~~~a~~~~~~~~~ 391 (764)
.|...|+.++|.++++.+.+
T Consensus 311 ~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 311 SFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHh
Confidence 66666666666666666653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.22 E-value=9.8e-06 Score=70.44 Aligned_cols=95 Identities=8% Similarity=-0.045 Sum_probs=59.8
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhc
Q 004269 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 239 (764)
.+..+...+.+.|++++|+..|+......+. +...|..+-.++...|++++|...|++..+..|.++..|..+..+|..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 4555555566666666666666666554322 445555565666666666666666666666566666666677777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 004269 240 LRDLKSAYETLQHMVA 255 (764)
Q Consensus 240 ~g~~~~A~~~~~~~~~ 255 (764)
.|++++|...|++..+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777766
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.21 E-value=8.1e-05 Score=73.45 Aligned_cols=166 Identities=7% Similarity=-0.066 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhCCcchHHHHHHhccccCCCCCh-----hcHHHHHHHhhCCCChhHHHHHHHHHHHcCc---ccc--HHH
Q 004269 55 TQMQIVDALCRGERSRASHLLLNLGHAHHSLGA-----DDFFHILNYCARSPDPLFVMETWRMMEEKEI---GLN--NKC 124 (764)
Q Consensus 55 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~~ 124 (764)
+...+..+...|++++|++.+..........+. ..+..+...+...|+++.|.+.+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334455666777777777777665544311110 1123344455566677777777776664311 111 336
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhh---hcCCCC--ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcC----CCC-Chh
Q 004269 125 YLLMMQALCKGGYLEEASNLIYFLGE---RYGIYP--ILPVYNSFLGACAKLHSMVHANLCLDLMDSRM----VGK-NEV 194 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~ 194 (764)
|+.+...|...|++++|...|++..+ ..+..+ ...+|+.+...|.+.|++++|+..++...+.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 66677777777777777777776652 211111 11366667777777777777777776654321 111 134
Q ss_pred hHHHHHHHHHhhcChhHH-HHHHHHHH
Q 004269 195 TYTELLKLAVWQKNLSAV-HEIWEDYI 220 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a-~~~~~~~~ 220 (764)
+|..+...+...|+.++| ...++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 556666666667777666 55555543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.20 E-value=4.3e-05 Score=67.77 Aligned_cols=129 Identities=12% Similarity=-0.135 Sum_probs=77.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|+...+... .+..++..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 44555555666666666666666655432 22344566666666666666666666666655422 2445566666666
Q ss_pred HhhcChhHHHHHHHHHHhcCCCCHhhHHH--HHHHhhccCCHHHHHHHHHHHHH
Q 004269 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRK--FVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
...|++++|...++...+..+.+...+.. +...+...|++++|...+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 66677777777766666655555555433 33336677888888888877654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.20 E-value=3.3e-05 Score=64.40 Aligned_cols=110 Identities=12% Similarity=-0.065 Sum_probs=51.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+..+...+...|++++|.++|+++.+.. +.+...+..+...+.+.|++++|...|+.+.+... .+..++..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 44444444555555555555555544321 12333444455555555555555555555444321 1334444444555
Q ss_pred HhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHH
Q 004269 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 236 (764)
...|++++|...++.+.+..+.+...+..+..+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 555555555555555544444444444443333
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-05 Score=70.74 Aligned_cols=127 Identities=9% Similarity=-0.159 Sum_probs=69.8
Q ss_pred hHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004269 54 ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 54 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 133 (764)
.+..+...+...|++++|+..|+...... +.+...+..+..++...|+++.|.+.+++..+.. +.+...+..+...|.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444555666677777777766666544 3345555556666666666666666666666553 334555666666666
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChhhh--HHHHHHHhccCCHHHHHHHHHHH
Q 004269 134 KGGYLEEASNLIYFLGERYGIYPILPVY--NSFLGACAKLHSMVHANLCLDLM 184 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m 184 (764)
..|++++|...|++..+..+ .+...+ -.+...+.+.|++++|+..+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666666554321 122222 22222244555555555555543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.9e-05 Score=65.23 Aligned_cols=107 Identities=13% Similarity=-0.107 Sum_probs=59.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+......|.+.|++++|++.|++..+.+ +.+...|..+..+|.+.|++++|+..|+...+..+. +...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 44455555666666666666666554432 234445555666666666666666666665554222 344555555556
Q ss_pred HhhcChhHHHHHHHHHHhcCCCCHhhHHHH
Q 004269 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKF 233 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 233 (764)
...|++++|.+.|+..++..|.+..++..|
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 666666666666666555555555544444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.6e-05 Score=69.17 Aligned_cols=109 Identities=7% Similarity=-0.059 Sum_probs=74.1
Q ss_pred hccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCcc
Q 004269 40 LTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIG 119 (764)
Q Consensus 40 ~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 119 (764)
+...++..|+... .+..+...+...|++++|+..|+.....+ |.++..|..+..++...|++++|.+.|++..+.. +
T Consensus 25 l~~al~l~p~~~~-~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P 101 (151)
T 3gyz_A 25 LKDINAIPDDMMD-DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-K 101 (151)
T ss_dssp TGGGCCSCHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred HHHHhCCCHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-C
Confidence 3344555566433 33444566777778888888887777665 4456667777777777777777777777777764 4
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 004269 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGER 151 (764)
Q Consensus 120 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 151 (764)
.++..|..+..+|...|++++|+..|++..+.
T Consensus 102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45667777777777777777777777777643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.18 E-value=2.3e-05 Score=65.41 Aligned_cols=94 Identities=15% Similarity=-0.006 Sum_probs=44.9
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004269 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 169 (764)
+..+...+...|+++.|.++++++.+.. +.+...+..+...+...|++++|..+|+++.+.. +.+..++..+...+.
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHH
Confidence 4444444444455555555555444432 2234444445555555555555555555544321 223334445555555
Q ss_pred ccCCHHHHHHHHHHHhh
Q 004269 170 KLHSMVHANLCLDLMDS 186 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~ 186 (764)
..|++++|...|+.+.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55555555555555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00041 Score=68.66 Aligned_cols=222 Identities=9% Similarity=-0.013 Sum_probs=140.0
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC-CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhcc-C-CHHH
Q 004269 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG-YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL-H-SMVH 176 (764)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-g-~~~~ 176 (764)
.+..++|+++++.++..+ +-+..+|+.--..+...| .+++++++++.+...+ +-+..+|+.--..+.+. + ++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChHH
Confidence 344456667777666654 334455555555555556 4777777777776433 33444555555555444 4 6677
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChh--------HHHHHHHHHHhcCCCCHhhHHHHHHHhhccCC------
Q 004269 177 ANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS--------AVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD------ 242 (764)
Q Consensus 177 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 242 (764)
++++++.+.+...+ +..+|+.-.-.+...+.++ ++.+.++.+.+..+.|..+|+....++.+.+.
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 77777777665433 5556655544444444444 78888888888888888888888888887776
Q ss_pred -HHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCH------------
Q 004269 243 -LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNS------------ 309 (764)
Q Consensus 243 -~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~------------ 309 (764)
++++++.+++..+ ..|+. ...|+-+-..+.+.|+.
T Consensus 223 ~~~eELe~~~~aI~--~~P~n------------------------------~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~ 270 (349)
T 3q7a_A 223 SLQDELIYILKSIH--LIPHN------------------------------VSAWNYLRGFLKHFSLPLVPILPAILPYT 270 (349)
T ss_dssp HHHHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTTCCSGGGHHHHGGGT
T ss_pred HHHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHHHhcCCCcccccccccccc
Confidence 6888888888887 55554 24777666666555543
Q ss_pred --------HHHHHHHHHHHHCC-----CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 004269 310 --------GLAEQLMLQMQSLG-----LQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQN 357 (764)
Q Consensus 310 --------~~a~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 357 (764)
....++..++...+ -.++...+..+...|...|+.++|.++++.+.+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 271 ASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp C--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22333333333221 1346667888888999999999999999998643
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00074 Score=66.50 Aligned_cols=196 Identities=9% Similarity=-0.107 Sum_probs=144.5
Q ss_pred HHHHHhhCCcc-hHHHHHHhccccCCCCChh-cHHHHHHHhhCCCC----------hhHHHHHHHHHHHcCccccHHHHH
Q 004269 59 IVDALCRGERS-RASHLLLNLGHAHHSLGAD-DFFHILNYCARSPD----------PLFVMETWRMMEEKEIGLNNKCYL 126 (764)
Q Consensus 59 i~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~ 126 (764)
+....+.|.+. +|+++++.+...+ |+.. .++.--.++...+. ++.++.+++.+...+ +-+..+|+
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~ 112 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 112 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 44455667665 8999999999876 4433 33332222222222 567888999988875 55777888
Q ss_pred HHHHHHHccC--CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCC-HHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 004269 127 LMMQALCKGG--YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHS-MVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 127 ~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.-.-.+...| .+++++.+++.+.+.+ +-|..+|+.-.-++...|. ++++++.++.+.+..+. |..+|+.....+
T Consensus 113 hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll 189 (331)
T 3dss_A 113 HRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 7777777777 4899999999998765 4466677777777777787 58999999999987655 777887766665
Q ss_pred Hhh--------------cChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc-----------CCHHHHHHHHHHHHHhhc
Q 004269 204 VWQ--------------KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL-----------RDLKSAYETLQHMVALAM 258 (764)
Q Consensus 204 ~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~ 258 (764)
... +.++++.+.+...+...|.|..+|+-+-..+.+. +.++++++.++++.+ +
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~ 267 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--L 267 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--h
Confidence 554 4578888999999888999999998776666655 467889999999988 6
Q ss_pred cCcc
Q 004269 259 MGKL 262 (764)
Q Consensus 259 ~~~~ 262 (764)
.|+.
T Consensus 268 ~pd~ 271 (331)
T 3dss_A 268 EPEN 271 (331)
T ss_dssp CTTC
T ss_pred Cccc
Confidence 6765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.17 E-value=3e-05 Score=75.98 Aligned_cols=96 Identities=10% Similarity=-0.091 Sum_probs=61.0
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhh
Q 004269 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (764)
..+..+...+.+.|++++|+..|+......+. +...|..+..++...|++++|...++...+..+.+...+..+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34455555555666666666666665554221 44555555556666666666666666666655666667777777777
Q ss_pred ccCCHHHHHHHHHHHHH
Q 004269 239 RLRDLKSAYETLQHMVA 255 (764)
Q Consensus 239 ~~g~~~~A~~~~~~~~~ 255 (764)
..|++++|...|++..+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 78888888888877776
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.16 E-value=3.7e-05 Score=64.55 Aligned_cols=101 Identities=10% Similarity=-0.044 Sum_probs=91.2
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhh
Q 004269 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (764)
..+......|.+.|++++|++.|+...+..+ .+..+|..+..++...|++++|...++..++..+.+..+|..+..+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4577788899999999999999999988643 367888899999999999999999999999988899999999999999
Q ss_pred ccCCHHHHHHHHHHHHHhhccCcc
Q 004269 239 RLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
..|++++|.+.|++..+ +.|+.
T Consensus 93 ~~~~~~~A~~~~~~al~--l~P~~ 114 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ--VDPSN 114 (126)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HCCCHHHHHHHHHHHHH--HCcCC
Confidence 99999999999999998 66765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.8e-05 Score=70.88 Aligned_cols=136 Identities=10% Similarity=0.002 Sum_probs=73.2
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHhhc----CCC-CChhhHHHHHHHHHhhcChhHHHHHHHHHHhc---CCCC----H
Q 004269 160 VYNSFLGACAKLHSMVHANLCLDLMDSR----MVG-KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKH---YSLS----I 227 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~----~ 227 (764)
++..+...+...|++++|...+++.... +.. ....++..+...+...|++++|.+.+++..+. .+.+ .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 4444444444445555554444443331 111 12223444444555555555555555555432 2211 2
Q ss_pred hhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccC
Q 004269 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ 307 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 307 (764)
.++..+...+...|++++|...+++..+......... ....++..+...+...|
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------------~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV--------------------------AIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH--------------------------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH--------------------------HHHHHHHHHHHHHHHCc
Confidence 3466667777777888888888877765322211100 00135677778888888
Q ss_pred CHHHHHHHHHHHHH
Q 004269 308 NSGLAEQLMLQMQS 321 (764)
Q Consensus 308 ~~~~a~~~~~~m~~ 321 (764)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888877654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.5e-05 Score=78.15 Aligned_cols=192 Identities=8% Similarity=-0.072 Sum_probs=134.1
Q ss_pred hHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004269 54 ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 54 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 133 (764)
.+......+...|++++|+..|++..... +.+...|..+..++.+.|+++.|.+.+++..+.+ +.+...+..+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455677889999999999999998875 4467788889999999999999999999999875 456788999999999
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHH
Q 004269 134 KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVH 213 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 213 (764)
..|++++|...|++..+..+- +...+...+....+. ..+.. +..........+......+ ..+ ..|+.++|.
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~--~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKE--QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH--TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 999999999999987654311 111222233322221 11111 1222223334444443333 323 378899999
Q ss_pred HHHHHHHhcCCCCHhhHHHHHHHhhcc-CCHHHHHHHHHHHHH
Q 004269 214 EIWEDYIKHYSLSIFSLRKFVWSFTRL-RDLKSAYETLQHMVA 255 (764)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~ 255 (764)
+.++...+..+.+......+...+.+. +..++|.++|..+.+
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 988888877666666666666666665 678889999988765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.1e-05 Score=70.94 Aligned_cols=123 Identities=8% Similarity=-0.033 Sum_probs=91.1
Q ss_pred HHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH-HHccCCH--
Q 004269 62 ALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA-LCKGGYL-- 138 (764)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~-- 138 (764)
+...|++++|+..|+...... +.+...+..+..++...|+++.|...+++..+.. +.+...+..+... |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345778888888888877665 4566778888888888889999999988888764 3466677777777 7788887
Q ss_pred HHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcC
Q 004269 139 EEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 139 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 188 (764)
++|...|++..+.. +.+...+..+...|...|++++|...|+...+..
T Consensus 98 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888887543 2345677778888888888888888888887753
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.13 E-value=4.3e-05 Score=64.71 Aligned_cols=96 Identities=11% Similarity=-0.103 Sum_probs=46.9
Q ss_pred hcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHH
Q 004269 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 167 (764)
..+..+...+...|+++.|...+++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHHHHH
Confidence 334444555555555555555555555442 2244445555555555555555555555544321 1233344444555
Q ss_pred HhccCCHHHHHHHHHHHhh
Q 004269 168 CAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~ 186 (764)
+.+.|++++|...|+...+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=3.6e-05 Score=64.85 Aligned_cols=118 Identities=9% Similarity=-0.131 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 004269 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 201 (764)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++...+..+ .+...+..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHH
Confidence 3344455555555555555555555554322 22344455555555555555555555555554321 13444555555
Q ss_pred HHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCC
Q 004269 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD 242 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (764)
.+...|++++|...++...+..+.+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 55555566666665555555444455555555555544443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.1e-05 Score=70.84 Aligned_cols=119 Identities=9% Similarity=-0.004 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHH-hhccCCH--HHHH
Q 004269 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS-FTRLRDL--KSAY 247 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~A~ 247 (764)
.|++++|...|+......+ .+...+..+...+...|+++.|...++...+..+.+...+..+..+ +...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 4455555555554444321 1334444455555555555555555555554444455555555555 5555665 6666
Q ss_pred HHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 248 ETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
..|+...+ ..|+. ...|..+...+...|++++|...|++..+.
T Consensus 102 ~~~~~al~--~~p~~------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 102 AMIDKALA--LDSNE------------------------------ITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHH--hCCCc------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666655 23332 135555666666666666666666666554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=3e-05 Score=67.41 Aligned_cols=111 Identities=10% Similarity=0.064 Sum_probs=80.9
Q ss_pred hhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCc
Q 004269 39 TLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEI 118 (764)
Q Consensus 39 ~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 118 (764)
.|...++..|+. ...+......+...|++++|+..|+.....+ +.+...+..+..++...|+++.|...|++..+.+
T Consensus 9 ~~~~al~~~p~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEISSDT-LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCCHhh-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 344455666664 3334445667778888888888888887765 4566677777778888888888888888888764
Q ss_pred cccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc
Q 004269 119 GLNNKCYLLMMQALCKGGYLEEASNLIYFLGERY 152 (764)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 152 (764)
+.+...+..+..+|...|++++|...|+...+..
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4466777778888888888888888888776543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.9e-05 Score=71.72 Aligned_cols=125 Identities=10% Similarity=-0.001 Sum_probs=69.8
Q ss_pred hcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCc
Q 004269 206 QKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNA 285 (764)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (764)
.|++++|.+.++.+.........++..+...+...|++++|...+++..+.....+..
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------- 62 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH---------------------- 62 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH----------------------
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc----------------------
Confidence 4444555443333322222334555666666667777777777777666522111110
Q ss_pred cccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC--CcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 286 LPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL----GLQP--SSHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 286 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
.....+++.+...+...|++++|...+++.... +-.| ....+..+...+...|++++|...+++..+
T Consensus 63 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 63 ----TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 000247777788888888888888888776542 1111 123455566666777777777777776654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=5.7e-05 Score=63.91 Aligned_cols=98 Identities=11% Similarity=-0.067 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+..|+...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-------------- 78 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQ-------------- 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH--------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH--------------
Confidence 34455555555555555555555555554321 12334445555555555555555555555444
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
..+.+...+..+..++...|++++|.+.|++..+
T Consensus 79 ---------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 79 ---------------------LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp ---------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------hCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3344444555555555556666666666665554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=2.9e-05 Score=67.46 Aligned_cols=97 Identities=6% Similarity=-0.163 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 004269 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK 201 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 201 (764)
...+..+...+...|++++|+..|++..... +.+...|..+..+|.+.|++++|+..|+......+. +...+..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 3344455555555666666666665554332 223445555555555666666666666555554221 3445555555
Q ss_pred HHHhhcChhHHHHHHHHHHh
Q 004269 202 LAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~ 221 (764)
++...|++++|...|+...+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55556666666665555554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=5.1e-05 Score=63.86 Aligned_cols=103 Identities=9% Similarity=-0.109 Sum_probs=89.8
Q ss_pred ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHH
Q 004269 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236 (764)
Q Consensus 157 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 236 (764)
+...+..+...+...|++++|...|+....... .+...+..+...+...|++++|...++...+..+.+...+..+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 455778888899999999999999999887642 3677888888899999999999999999998888889999999999
Q ss_pred hhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 237 FTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
+...|+++.|...|++..+ ..|+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~--~~p~~ 113 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALE--LDPDN 113 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HSTTC
T ss_pred HHHhCCHHHHHHHHHHHHh--cCccc
Confidence 9999999999999999988 34443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.06 E-value=4.1e-05 Score=65.98 Aligned_cols=109 Identities=12% Similarity=0.038 Sum_probs=81.1
Q ss_pred hccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCcc
Q 004269 40 LTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIG 119 (764)
Q Consensus 40 ~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 119 (764)
|...+...|+... .+......+...|++++|+..|+.....+ +.+...+..+..++...|+++.|...|++..+.+ +
T Consensus 7 l~~al~~~p~~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 83 (142)
T 2xcb_A 7 LAMLRGLSEDTLE-QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-I 83 (142)
T ss_dssp --CCTTCCHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHcCCHHHHH-HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 3444566666433 34445667788889999999998888765 4566677777888888888888888888888875 4
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 004269 120 LNNKCYLLMMQALCKGGYLEEASNLIYFLGER 151 (764)
Q Consensus 120 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 151 (764)
.++..+..+..+|...|++++|...|+...+.
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56677778888888888888888888887654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.04 E-value=6.2e-05 Score=71.91 Aligned_cols=189 Identities=6% Similarity=-0.144 Sum_probs=132.8
Q ss_pred hhCCcchHHHHHHhccccCCCCChhcHHHH-------HHHhhCCCChhHHHHHHHHHHHcCcccc---------------
Q 004269 64 CRGERSRASHLLLNLGHAHHSLGADDFFHI-------LNYCARSPDPLFVMETWRMMEEKEIGLN--------------- 121 (764)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------- 121 (764)
..+++..|.+.|.++.... +-....|.-+ ..++.+.+....+...+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 6899999999999999876 3334455544 2222222223333333333332 2221
Q ss_pred -------HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCC--C
Q 004269 122 -------NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGK--N 192 (764)
Q Consensus 122 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~ 192 (764)
...+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .| .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 223445677888999999999999988643 3444466666778899999999999998554421 11 1
Q ss_pred hhhHHHHHHHHHhhcChhHHHHHHHHHHhcCC-C--CHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCc
Q 004269 193 EVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS-L--SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGK 261 (764)
Q Consensus 193 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 261 (764)
...+..+-.++...|++++|.+.|++...+.. | ..........++.+.|+.++|..+|+++.. ..|+
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc
Confidence 23677788889999999999999999987642 4 345778888899999999999999999998 4444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.03 E-value=6.4e-05 Score=75.74 Aligned_cols=113 Identities=12% Similarity=-0.038 Sum_probs=60.9
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
+...+..+...|.+.|++++|+..|++..+.. |+...+ ..+.+..+-. ....+|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~-----------~~~~~~~~~~--------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL---EYESSF-----------SNEEAQKAQA--------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCCCC-----------CSHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh---hccccC-----------ChHHHHHHHH--------HHHHHHHHHH
Confidence 34566666666666777777777776665432 221000 0000000000 0124455555
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.++...|++++|...++..++..+.+..++..+..+|...|++++|...|++..+
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5556666666666666666655555666666666666666666666666666665
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0001 Score=74.28 Aligned_cols=120 Identities=6% Similarity=-0.254 Sum_probs=73.1
Q ss_pred hCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCcccc--------------HHHHHHHHH
Q 004269 65 RGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLN--------------NKCYLLMMQ 130 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~li~ 130 (764)
.+++++|+..|+...... +-+...+..+...+.+.|+++.|...|++.++..-... ...|..+..
T Consensus 126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 355667777666654432 23456788888899999999999999999998742111 345555555
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc
Q 004269 131 ALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
.|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|+...+.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5555566666666555554432 223444555555555555555555555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.97 E-value=7.8e-05 Score=71.22 Aligned_cols=189 Identities=10% Similarity=-0.122 Sum_probs=115.1
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHH-------HHHHHccCCHHHHHHHHHHHhhhcCCCCChh------------
Q 004269 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLM-------MQALCKGGYLEEASNLIYFLGERYGIYPILP------------ 159 (764)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~------------ 159 (764)
..+++..|.+.|.+..+.+ +-....|..+ ...+.+.++..++...+..-. ++.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l---~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV---QISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT---TCCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh---cCChhhhhhhhccCCcccc
Confidence 5688888999999888875 4456677766 345555444555544444332 2333221
Q ss_pred ----------hhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCC--H
Q 004269 160 ----------VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLS--I 227 (764)
Q Consensus 160 ----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~ 227 (764)
.+-.+...+...|++++|.++|+.+...+ |+......+-..+.+.++++.|+..++...+...|. .
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~ 171 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAG 171 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHH
Confidence 12235566777888888888888777643 433344444446677788888888776443322121 2
Q ss_pred hhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccC
Q 004269 228 FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ 307 (764)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 307 (764)
.++..+..++...|++++|+..|++.......|... ...+.....++.+.|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~-----------------------------~da~~~~glaL~~lG 222 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACA-----------------------------RAIAWYLAMARRSQG 222 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTH-----------------------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcccc-----------------------------HHHHHHHHHHHHHcC
Confidence 356667777777777777777777766422113210 124555666677777
Q ss_pred CHHHHHHHHHHHHHC
Q 004269 308 NSGLAEQLMLQMQSL 322 (764)
Q Consensus 308 ~~~~a~~~~~~m~~~ 322 (764)
+.++|..+|+++...
T Consensus 223 r~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 223 NESAAVALLEWLQTT 237 (282)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 777777777777764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=1.6e-05 Score=73.32 Aligned_cols=62 Identities=15% Similarity=-0.011 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
..+..+..++...|++++|...++...+..+.+..++..+..+|...|++++|...|++..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 45555566666667777777777776666666667777777777777777777777777766
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=2.2e-05 Score=72.37 Aligned_cols=154 Identities=8% Similarity=-0.128 Sum_probs=91.2
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC--------------hhhhHHHH
Q 004269 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI--------------LPVYNSFL 165 (764)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--------------~~~~~~li 165 (764)
.|+++.+.+.|+.-.... ......+..+...+...|++++|...|++..+..+-.|+ ...|..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp -----CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 344444444444222211 123345556666677777777777777766543221121 15677777
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHH
Q 004269 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 245 (764)
.+|.+.|++++|+..++...+... .+...+..+..++...|+++.|...|+...+..+.+..++..+..++...++.++
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888887776532 2556777777778888888888888888877777777777777777777777666
Q ss_pred HH-HHHHHHHH
Q 004269 246 AY-ETLQHMVA 255 (764)
Q Consensus 246 A~-~~~~~~~~ 255 (764)
+. ..|..+..
T Consensus 175 ~~~~~~~~~f~ 185 (198)
T 2fbn_A 175 KDKLTFGGMFD 185 (198)
T ss_dssp -----------
T ss_pred HHHHHHHHHhc
Confidence 65 44555543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0003 Score=57.70 Aligned_cols=104 Identities=11% Similarity=-0.123 Sum_probs=47.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++...+..+ .+...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 34444444445555555555555443321 12333444444445555555555555555444321 1333444444445
Q ss_pred HhhcChhHHHHHHHHHHhcCCCCHhhH
Q 004269 204 VWQKNLSAVHEIWEDYIKHYSLSIFSL 230 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~ 230 (764)
...|++++|.+.++...+..+.+...+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~ 109 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLK 109 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 555555555555555444333333333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00017 Score=58.63 Aligned_cols=102 Identities=11% Similarity=0.004 Sum_probs=66.1
Q ss_pred ChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHH
Q 004269 86 GADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFL 165 (764)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 165 (764)
+...+..+...+...|+++.|...+++..+.. +.+...+..+...|...|++++|...|++..+..+-..+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34456666666677777777777777776654 33556666677777777777777777777654321100355666677
Q ss_pred HHHhcc-CCHHHHHHHHHHHhhcC
Q 004269 166 GACAKL-HSMVHANLCLDLMDSRM 188 (764)
Q Consensus 166 ~~~~~~-g~~~~A~~~~~~m~~~g 188 (764)
..+.+. |++++|.+.|+......
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 777777 77777777777776653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00019 Score=60.09 Aligned_cols=94 Identities=15% Similarity=-0.066 Sum_probs=42.8
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004269 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 169 (764)
+..+...+.+.|+++.|.+.|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.+ +.+...|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 3344444444455555555555544442 2234444444445555555555555554444322 122334444444444
Q ss_pred ccCCHHHHHHHHHHHhh
Q 004269 170 KLHSMVHANLCLDLMDS 186 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~ 186 (764)
..|++++|...|+...+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 44555555444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00017 Score=58.56 Aligned_cols=96 Identities=4% Similarity=-0.240 Sum_probs=59.4
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCC--CHhhHHHHHHH
Q 004269 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSL--SIFSLRKFVWS 236 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~ 236 (764)
..+..+...+.+.|++++|...|+...+... .+...+..+...+...|++++|...++...+..+. +...+..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3455555556666666666666666555422 23445555555666666666666666666665555 56666667777
Q ss_pred hhcc-CCHHHHHHHHHHHHH
Q 004269 237 FTRL-RDLKSAYETLQHMVA 255 (764)
Q Consensus 237 ~~~~-g~~~~A~~~~~~~~~ 255 (764)
+... |++++|.+.|+...+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 7777 777777777777665
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00012 Score=64.77 Aligned_cols=99 Identities=13% Similarity=-0.098 Sum_probs=75.8
Q ss_pred hhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHH
Q 004269 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQA 131 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 131 (764)
...+..+...+...|++++|+..|++..... +.+...|..+..++...|+++.|...+++.++.+ +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4445556667778888888888888887765 3466677778888888888888888888888775 4457778888888
Q ss_pred HHccCCHHHHHHHHHHHhhhc
Q 004269 132 LCKGGYLEEASNLIYFLGERY 152 (764)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~~ 152 (764)
|...|++++|...|++..+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 888888888888888876554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00015 Score=62.44 Aligned_cols=93 Identities=6% Similarity=-0.127 Sum_probs=44.5
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhc
Q 004269 91 FHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170 (764)
Q Consensus 91 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 170 (764)
..+...+.+.|+++.|...|+...+.+ +.+...|..+..+|...|++++|+..|++..... +.+...+..+..+|..
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHH
Confidence 333444444555555555555555443 2344444455555555555555555555544322 1223344444455555
Q ss_pred cCCHHHHHHHHHHHhh
Q 004269 171 LHSMVHANLCLDLMDS 186 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~ 186 (764)
.|++++|...|+...+
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555554443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0063 Score=59.88 Aligned_cols=219 Identities=7% Similarity=-0.123 Sum_probs=151.3
Q ss_pred CCCh-hHHHHHHHHHHHcCccccHHHHHHHHHHHHccCC----------HHHHHHHHHHHhhhcCCCCChhhhHHHHHHH
Q 004269 100 SPDP-LFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGY----------LEEASNLIYFLGERYGIYPILPVYNSFLGAC 168 (764)
Q Consensus 100 ~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 168 (764)
.|.+ ++|+++.+.++..+ +-+..+|+.--..+...|. +++++.+++.+...+ +-+..+|+.-...+
T Consensus 42 ~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~wlL 118 (331)
T 3dss_A 42 AGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLL 118 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 3444 47899999998875 3345556544333333332 678999999987654 34566777766666
Q ss_pred hccC--CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcC-hhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc-----
Q 004269 169 AKLH--SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN-LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL----- 240 (764)
Q Consensus 169 ~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 240 (764)
.+.+ ++++++.+++.+.+..+. |..+|+.-.-.+...|. ++++.+.++.+++..+.|..+|+....++.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 6667 489999999999987544 77788877777777787 58999999999998999999998887776655
Q ss_pred ---------CCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHcc-----
Q 004269 241 ---------RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRT----- 306 (764)
Q Consensus 241 ---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 306 (764)
+.++++++.+..... ..|++ ..+|+-+-..+.+.
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~--~~P~d------------------------------~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFF--TDPND------------------------------QSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHH--HSTTC------------------------------HHHHHHHHHHHHSSSCGGG
T ss_pred cccccccchHHHHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHHHhccCccc
Confidence 457889999999887 56665 24676554444444
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCcccHHHHHHH-----HHhcCChhHHHHHHHHHHHC
Q 004269 307 ------QNSGLAEQLMLQMQSLGLQPSSHTYDGFIRA-----IVSDRGLRNGMEVLKIMQQN 357 (764)
Q Consensus 307 ------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~ 357 (764)
+.++++++.++++.+. .||. .|..+-.+ ....+..+++...+.++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3467888888888874 5665 33322111 11345556666677766654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00023 Score=59.64 Aligned_cols=56 Identities=9% Similarity=0.046 Sum_probs=26.8
Q ss_pred HHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 200 LKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
...+...|++++|...|+..++..+.+...+..+..+|.+.|++++|...|++..+
T Consensus 11 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (126)
T 3upv_A 11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444555555555555555555555444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00024 Score=59.64 Aligned_cols=110 Identities=14% Similarity=0.061 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccc
Q 004269 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLR 273 (764)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (764)
.++..+...+.+.|++++|...|++.++..|.+..+|..+..+|...|++++|+..|++..+. .|+...
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~--------- 77 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRA--------- 77 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTC---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--Ccccch---------
Confidence 345566677778888888888888887777778888889999999999999999999998873 332200
Q ss_pred ccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCccc
Q 004269 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHT 330 (764)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 330 (764)
.......+|..+..++...|++++|++.|++.... .||...
T Consensus 78 --------------~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 78 --------------DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred --------------hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 00001136777888888899999999999887764 455443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0007 Score=71.01 Aligned_cols=198 Identities=8% Similarity=-0.159 Sum_probs=144.4
Q ss_pred HHHHHHhhCCcchHHHHHHhccccCCCCCh----------------hcHHHHHHHhhCCCChhHHHHHHHHHHHcC-ccc
Q 004269 58 QIVDALCRGERSRASHLLLNLGHAHHSLGA----------------DDFFHILNYCARSPDPLFVMETWRMMEEKE-IGL 120 (764)
Q Consensus 58 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~ 120 (764)
....+...|++++|++.|..+.+....... ..+..+...|...|+++.|.+.+..+.+.- -.+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 466788999999999999998765422111 126778899999999999999999877631 111
Q ss_pred cH----HHHHHHHHHHHccCCHHHHHHHHHHHhhh---cCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHhhc--CC-
Q 004269 121 NN----KCYLLMMQALCKGGYLEEASNLIYFLGER---YGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSR--MV- 189 (764)
Q Consensus 121 ~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~- 189 (764)
+. .+.+.+-..+...|+.+.|..+++..... .+..+ ...++..|...|...|++++|..+++..... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 23444445556778999999998876432 11111 2346788999999999999999999887653 11
Q ss_pred -CC-ChhhHHHHHHHHHhhcChhHHHHHHHHHHhc---CCCC----HhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 190 -GK-NEVTYTELLKLAVWQKNLSAVHEIWEDYIKH---YSLS----IFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 190 -~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.+ ...++..+...|...|++++|..+++..... ...+ ...+..+...+...|+++.|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2347888889999999999999999988752 2222 34677778888999999999999888876
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00067 Score=55.49 Aligned_cols=93 Identities=11% Similarity=-0.083 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 004269 547 YNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE 626 (764)
Q Consensus 547 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 626 (764)
+..+...+...|++++|...++...+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3334444444455555555554444432 1234444445555555555555555555554321 2234455555555555
Q ss_pred cCCHHHHHHHHHHHH
Q 004269 627 KGRIDVIEFIIEQMH 641 (764)
Q Consensus 627 ~g~~~~a~~~~~~m~ 641 (764)
.|++++|.+.+++..
T Consensus 85 ~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 85 LNRFEEAKRTYEEGL 99 (118)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 555555555555554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00054 Score=71.87 Aligned_cols=200 Identities=9% Similarity=-0.080 Sum_probs=110.4
Q ss_pred HHHHccCCHHHHHHHHHHHhhhcCCCCCh---------------hhhHHHHHHHhccCCHHHHHHHHHHHhhcC-CCCCh
Q 004269 130 QALCKGGYLEEASNLIYFLGERYGIYPIL---------------PVYNSFLGACAKLHSMVHANLCLDLMDSRM-VGKNE 193 (764)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~ 193 (764)
..+.+.|++++|++.|..+.+...-..+. ..+..|...|...|++++|.+.+..+...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 34556667777777666665432211111 124556667777777777777776654421 11111
Q ss_pred h----hHHHHHHHHHhhcChhHHHHHHHHHHhc------CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcch
Q 004269 194 V----TYTELLKLAVWQKNLSAVHEIWEDYIKH------YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLY 263 (764)
Q Consensus 194 ~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 263 (764)
. +.+.+-..+...|+.+.+..++...... ...-..++..+...|...|++++|..+++.+...-...++
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~- 170 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD- 170 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC-
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc-
Confidence 1 1111222223456677777776666531 1122446677778888888888888888877653222221
Q ss_pred hcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC--CC-C-C--cccHHHHHHH
Q 004269 264 INRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG--LQ-P-S--SHTYDGFIRA 337 (764)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~-p-~--~~~~~~ll~~ 337 (764)
+.....+|..++..|...|++++|..++++..... +. | . ...+..+...
T Consensus 171 -------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 225 (434)
T 4b4t_Q 171 -------------------------KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGIL 225 (434)
T ss_dssp -------------------------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred -------------------------chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 00112577788888888888888888887765421 11 1 1 1233344444
Q ss_pred HHhcCChhHHHHHHHHHH
Q 004269 338 IVSDRGLRNGMEVLKIMQ 355 (764)
Q Consensus 338 ~~~~~~~~~a~~~~~~~~ 355 (764)
+...+++++|...|.+..
T Consensus 226 ~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 226 HCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp TTSSSCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 556667777766665554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00019 Score=62.96 Aligned_cols=143 Identities=13% Similarity=-0.083 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCCh----hhhHHHHHHHhccCCHHHHHHHHHHHhhcCCC-CChhhHH
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPIL----PVYNSFLGACAKLHSMVHANLCLDLMDSRMVG-KNEVTYT 197 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~ 197 (764)
.++..+...|...|++++|...+++..+...-.++. .++..+...+...|++++|...++...+.... ++.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---- 85 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---- 85 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc----
Confidence 456666667777777777777777664321111111 24555555566666666666666554432100 000
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccccccc
Q 004269 198 ELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRL 277 (764)
Q Consensus 198 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (764)
.....++..+..++...|++++|...+++..+........
T Consensus 86 --------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------------- 125 (164)
T 3ro3_A 86 --------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR-------------- 125 (164)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------
T ss_pred --------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch--------------
Confidence 0012345556666777777777777777766532111110
Q ss_pred CCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 278 DIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
.....++..+...+...|++++|.+.+++..+
T Consensus 126 ------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 126 ------------IGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------------HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 00014667777778888888888888877654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00021 Score=63.20 Aligned_cols=98 Identities=10% Similarity=-0.126 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
+...+..+...|...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|+...+.... +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34455555555566666666666666554432 223445555555555555555555555555543211 233444444
Q ss_pred HHHHhhcChhHHHHHHHHHHh
Q 004269 201 KLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~ 221 (764)
.++...|++++|...|+...+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 444444444444444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00081 Score=57.87 Aligned_cols=96 Identities=13% Similarity=-0.146 Sum_probs=49.3
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCcccc----HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLN----NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYN 162 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 162 (764)
...+..+...+...|+++.|.+.|++..+.. |+ ...+..+...|...|++++|+..+++..+.. +.+...+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 103 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKALY 103 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHHH
Confidence 3344555555555566666666666555542 22 3445555555555555555555555554321 12333444
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhh
Q 004269 163 SFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
.+..++...|++++|...|+....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555555544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00011 Score=61.15 Aligned_cols=95 Identities=4% Similarity=-0.140 Sum_probs=64.5
Q ss_pred hHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHH
Q 004269 54 ATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALC 133 (764)
Q Consensus 54 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 133 (764)
.+......+...|++++|+..|+...... +.+...+..+..++...|+++.|...+++..+.+ +.+...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444556677777777777777777655 3455566666677777777777777777777664 335566667777777
Q ss_pred ccCCHHHHHHHHHHHhh
Q 004269 134 KGGYLEEASNLIYFLGE 150 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~ 150 (764)
..|++++|+..|++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00074 Score=58.14 Aligned_cols=96 Identities=9% Similarity=-0.160 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----hhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI----LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTY 196 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 196 (764)
+...+..+...+...|++++|...|++..+. .|+ ...|..+...|...|++++|+..++...+.... +...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 3445555555555555566655555555432 233 334444444555555555555555544443111 23333
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHH
Q 004269 197 TELLKLAVWQKNLSAVHEIWEDYI 220 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~ 220 (764)
..+..++...|++++|...++...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333344444444444444333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00047 Score=58.57 Aligned_cols=62 Identities=6% Similarity=0.050 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
..+..+...+...|+++.|...+....+..+.+...+..+..++...|+++.|...|+...+
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 71 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444555555555555555555555555544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00044 Score=58.78 Aligned_cols=97 Identities=10% Similarity=-0.094 Sum_probs=57.7
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHh
Q 004269 158 LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237 (764)
Q Consensus 158 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 237 (764)
...|..+...+...|++++|+..|+......+. +...+..+..++...|+++.|...++...+..+.+...+..+..+|
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 344555555555555555555555555443221 3445555555555566666666666666555555666666777777
Q ss_pred hccCCHHHHHHHHHHHHH
Q 004269 238 TRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 238 ~~~g~~~~A~~~~~~~~~ 255 (764)
...|+++.|...|++..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 777777777777777766
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00043 Score=58.03 Aligned_cols=96 Identities=11% Similarity=-0.139 Sum_probs=45.2
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-----hhhhHHH
Q 004269 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-----LPVYNSF 164 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~~l 164 (764)
+..+...+.+.|+++.|++.|++.++.. +.+...|..+..+|...|++++|++.|++..+..+-.+. ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344445555555555555555555443 234445555555555555555555555544332100000 0134444
Q ss_pred HHHHhccCCHHHHHHHHHHHhh
Q 004269 165 LGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~ 186 (764)
..++...|++++|++.|+....
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4445555555555555555444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00025 Score=58.88 Aligned_cols=94 Identities=12% Similarity=-0.036 Sum_probs=56.8
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc
Q 004269 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 240 (764)
+..+...+.+.|++++|+..|+...+..+. +...|..+-.++...|++++|...+++..+..+.+...+..+..+|...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 334445555566666666666665554221 4445555555566666666666666666665555666666666677777
Q ss_pred CCHHHHHHHHHHHHH
Q 004269 241 RDLKSAYETLQHMVA 255 (764)
Q Consensus 241 g~~~~A~~~~~~~~~ 255 (764)
|++++|...|++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777776665
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.71 E-value=5.6e-05 Score=62.51 Aligned_cols=86 Identities=8% Similarity=-0.089 Sum_probs=45.6
Q ss_pred hCCcchHHHHHHhccccC--CCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHH
Q 004269 65 RGERSRASHLLLNLGHAH--HSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEAS 142 (764)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 142 (764)
.|++++|+..|++..+.+ .+.+...+..+..++...|+++.|.+.+++..+.+ +.+...+..+..+|...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 455666666666665542 12233445555555556666666666666665553 334455555566666666666666
Q ss_pred HHHHHHhhh
Q 004269 143 NLIYFLGER 151 (764)
Q Consensus 143 ~~~~~m~~~ 151 (764)
..|++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666655443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00034 Score=58.68 Aligned_cols=113 Identities=6% Similarity=0.012 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccc
Q 004269 194 VTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLR 273 (764)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (764)
..+..+...+...|+++.|...++...+..+.+...+..+...+...|++++|...+++..+........
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------- 74 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED---------- 74 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh----------
Confidence 3455566666777777777777777776666677778888888888999999999999888743221000
Q ss_pred ccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHH
Q 004269 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDG 333 (764)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 333 (764)
......+|..+...+...|++++|.+.|++..+. .|+......
T Consensus 75 ---------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 117 (131)
T 1elr_A 75 ---------------YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKK 117 (131)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 0000147788888999999999999999998875 345444333
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00039 Score=58.27 Aligned_cols=91 Identities=11% Similarity=0.034 Sum_probs=38.4
Q ss_pred HHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHHHHHH
Q 004269 551 IDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG--IPHD----VLLYNTILKKA 624 (764)
Q Consensus 551 l~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~li~~~ 624 (764)
...+...|++++|...|+...+.. +.+...+..+...|...|++++|...+++..... ..++ ..+|..+...+
T Consensus 11 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 89 (131)
T 1elr_A 11 GNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHH
Confidence 333344444444444444443321 1233334444444444444444444444443321 0111 33444444445
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 004269 625 CEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 625 ~~~g~~~~a~~~~~~m~~ 642 (764)
...|++++|.+.+++..+
T Consensus 90 ~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 90 FKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 555555555555555443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00053 Score=60.04 Aligned_cols=140 Identities=11% Similarity=-0.179 Sum_probs=92.1
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCcc-cc----HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC----
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIG-LN----NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI---- 157 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---- 157 (764)
...+..+...+...|+++.|.+.+++..+..-. ++ ..++..+...|...|++++|...+++..+...-.++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345778888888999999999999998865211 11 247888899999999999999999987643211111
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHh
Q 004269 158 LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSF 237 (764)
Q Consensus 158 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 237 (764)
...+..+...+...|++++|...++...+..... ++. .....++..+...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~--------------~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL---------------KDR--------------IGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------------TCH--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc---------------cch--------------HhHHHHHHHHHHHH
Confidence 3356667777777888888888777665421000 000 00123344555666
Q ss_pred hccCCHHHHHHHHHHHHH
Q 004269 238 TRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 238 ~~~g~~~~A~~~~~~~~~ 255 (764)
...|++++|.+.+++..+
T Consensus 140 ~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 677777777777776655
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0017 Score=54.23 Aligned_cols=92 Identities=8% Similarity=-0.160 Sum_probs=39.0
Q ss_pred HHHhhCCCChhHHHHHHHHHHHcCccccH---HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-hhhhHHHHHHHh
Q 004269 94 LNYCARSPDPLFVMETWRMMEEKEIGLNN---KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-LPVYNSFLGACA 169 (764)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~ 169 (764)
...+...|+++.|...|+...+.. +.+. ..+..+...|...|++++|...|++..+..+-.+. ...+..+..++.
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 333444455555555555544432 1112 23444444444555555555555544432211000 223344444444
Q ss_pred ccCCHHHHHHHHHHHhh
Q 004269 170 KLHSMVHANLCLDLMDS 186 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~ 186 (764)
+.|++++|...|+.+..
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44445544444444444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0013 Score=55.06 Aligned_cols=57 Identities=16% Similarity=0.032 Sum_probs=27.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCCh---hhhHHHHHHHhccCCHHHHHHHHHHHhh
Q 004269 128 MMQALCKGGYLEEASNLIYFLGERYGIYPIL---PVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
+...+...|++++|...|+.+.+..+ .+. ..+..+..++.+.|++++|...|+...+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP--NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS--SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC--CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445555555555555555543321 111 2344444555555555555555555544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0011 Score=69.82 Aligned_cols=150 Identities=11% Similarity=0.003 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-------------hhhhHHHHHHHh
Q 004269 103 PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-------------LPVYNSFLGACA 169 (764)
Q Consensus 103 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------------~~~~~~li~~~~ 169 (764)
++.|.+.|+...+.. +-....|..+...|.+.|++++|+..|++..+...-.++ ...|..+..+|.
T Consensus 250 ~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 250 FEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444333321 224457778888888999999999999988754322111 468888999999
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHH-
Q 004269 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYE- 248 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~- 248 (764)
+.|++++|+..|+...+.... +...|..+-.+|...|++++|...|+...+..+.+..++..+..++.+.++.++|.+
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998886433 677888888899999999999999999998888888899999999999888887753
Q ss_pred HHHHHH
Q 004269 249 TLQHMV 254 (764)
Q Consensus 249 ~~~~~~ 254 (764)
.+..|.
T Consensus 408 ~~~~~f 413 (457)
T 1kt0_A 408 IYANMF 413 (457)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0008 Score=70.90 Aligned_cols=132 Identities=8% Similarity=-0.024 Sum_probs=106.1
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCC--------------hhhHHHHHHHHHhhcChhHHHHHHHHHHhcC
Q 004269 158 LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKN--------------EVTYTELLKLAVWQKNLSAVHEIWEDYIKHY 223 (764)
Q Consensus 158 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 223 (764)
...|..+...|.+.|++++|+..|+...+...... ...|..+..++.+.|++++|...++..++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44678888899999999999999999887532211 4788888889999999999999999999988
Q ss_pred CCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHH
Q 004269 224 SLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303 (764)
Q Consensus 224 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 303 (764)
+.+..+|..+..+|...|++++|...|++..+ +.|+. ...|..+...+
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~------------------------------~~a~~~l~~~~ 395 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQN------------------------------KAARLQISMCQ 395 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----------------------------------CHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHH
Confidence 88999999999999999999999999999988 55554 14788888888
Q ss_pred HccCCHHHHH-HHHHHHHH
Q 004269 304 GRTQNSGLAE-QLMLQMQS 321 (764)
Q Consensus 304 ~~~~~~~~a~-~~~~~m~~ 321 (764)
.+.++.+++. ..+..|..
T Consensus 396 ~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 396 KKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888887765 35555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00014 Score=77.01 Aligned_cols=125 Identities=9% Similarity=-0.140 Sum_probs=84.8
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc
Q 004269 161 YNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL 240 (764)
Q Consensus 161 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 240 (764)
+..+...+.+.|++++|++.|++..+.... +..+|..+..++...|++++|.+.+++..+..+.+..++..+..+|...
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 334444556677777777777777665322 4666777777777778888888888777777777778888888888889
Q ss_pred CCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHH--HHccCCHHHHHHHHHH
Q 004269 241 RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHA--CGRTQNSGLAEQLMLQ 318 (764)
Q Consensus 241 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~ 318 (764)
|++++|.+.|++..+ ..|+.. ..+..+..+ +.+.|++++|++.+++
T Consensus 88 g~~~eA~~~~~~al~--~~p~~~------------------------------~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 88 GKFRAALRDYETVVK--VKPHDK------------------------------DAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCT------------------------------THHHHHHHHHHHHHHHHHCCC------
T ss_pred CCHHHHHHHHHHHHH--hCCCCH------------------------------HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999988887 444431 245555554 7778888888888773
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00042 Score=73.41 Aligned_cols=89 Identities=12% Similarity=-0.122 Sum_probs=42.3
Q ss_pred HHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCH
Q 004269 95 NYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSM 174 (764)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 174 (764)
..+.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|.+.|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCH
Confidence 33444455555555555555442 2234455555555555555555555555544321 12233444444444445555
Q ss_pred HHHHHHHHHHhh
Q 004269 175 VHANLCLDLMDS 186 (764)
Q Consensus 175 ~~A~~~~~~m~~ 186 (764)
++|++.|++..+
T Consensus 91 ~eA~~~~~~al~ 102 (477)
T 1wao_1 91 RAALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0019 Score=65.64 Aligned_cols=125 Identities=7% Similarity=-0.215 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhc--------------CCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcC
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERY--------------GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRM 188 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 188 (764)
..+..+...|.+.|++++|+..|++..+.. .-+.+...|..+..+|.+.|++++|+..++...+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346677778888899999998888776410 011234578888888999999999999999988754
Q ss_pred CCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHH
Q 004269 189 VGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYE 248 (764)
Q Consensus 189 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 248 (764)
. .+...|..+..++...|++++|...++...+..+.+...+..+..++...++.+++.+
T Consensus 304 p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 P-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2567788888889999999999999999988777788888888888777777766643
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00057 Score=56.27 Aligned_cols=84 Identities=10% Similarity=-0.022 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHhhcCC--CCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHH
Q 004269 172 HSMVHANLCLDLMDSRMV--GKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYET 249 (764)
Q Consensus 172 g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 249 (764)
|++++|+..|+...+.+. +.+..++..+..++...|++++|...+++..+..+.+..++..+..++...|++++|...
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444444443220 112233444444445555555555555555544455555555555666666666666666
Q ss_pred HHHHHH
Q 004269 250 LQHMVA 255 (764)
Q Consensus 250 ~~~~~~ 255 (764)
|++..+
T Consensus 84 ~~~al~ 89 (117)
T 3k9i_A 84 LLKIIA 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666555
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0025 Score=55.96 Aligned_cols=28 Identities=4% Similarity=-0.307 Sum_probs=18.2
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHhh
Q 004269 159 PVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
..+......+.+.|++++|+..|.....
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~ 39 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALT 39 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666666677777777777766554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0017 Score=57.08 Aligned_cols=121 Identities=13% Similarity=-0.030 Sum_probs=73.9
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
....+......+.+.|++++|+..|++...... + .....+..... ...+. +.+...|..+.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~---~----------~~~~~~~~~~~--~~~~~----~~~~~~~~nla 70 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLD---T----------LILREKPGEPE--WVELD----RKNIPLYANMS 70 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---H----------HHHTSCTTSHH--HHHHH----HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---H----------hcccCCCCHHH--HHHHH----HHHHHHHHHHH
Confidence 355777888899999999999999998764310 0 00000000000 00000 11334555566
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
.++...|+++.|...++..++..+.+..+|..+..+|...|++++|...|+...+ +.|+.
T Consensus 71 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~ 130 (162)
T 3rkv_A 71 QCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAA 130 (162)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGG
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCC
Confidence 6666667777777777766666666677777777777777777777777777776 44543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0021 Score=55.19 Aligned_cols=66 Identities=8% Similarity=-0.050 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhhcChhHHHHHHHHHHhc-------CCCCHhhH----HHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 195 TYTELLKLAVWQKNLSAVHEIWEDYIKH-------YSLSIFSL----RKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
.|..+-.++...|++++|...++..++- .+.+...| .....++...|++++|+..|++..+ +.|++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle--l~p~d 135 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE--MIEER 135 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh--cCCCc
Confidence 4555555555556666555555555554 55566677 8888889999999999999999887 45543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0043 Score=52.65 Aligned_cols=111 Identities=7% Similarity=-0.120 Sum_probs=71.5
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 004269 523 QESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD----YGDFDEA 598 (764)
Q Consensus 523 ~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A 598 (764)
++.++|+..|++..+.| .|+.. +-..|...+.+++|..+|++..+.| +...+..|...|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35667777777777766 33333 4444555566677777777777654 45566666666666 5677777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 004269 599 LNLLDLVSLEGIPHDVLLYNTILKKACE----KGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 599 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 644 (764)
.++|++..+.| ++..+..|...|.. .++.++|.+++++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777776653 45556666666666 667777777777776654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00086 Score=67.45 Aligned_cols=150 Identities=8% Similarity=-0.131 Sum_probs=82.9
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELL 200 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 200 (764)
....+..+...+.+.|++++|...|++..... |+.. .+...++..++...+. ...|..+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla 237 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDF-------MFQLYGKYQDMALAVK----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHH-------HHTCCHHHHHHHHHHH----------THHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccch-------hhhhcccHHHHHHHHH----------HHHHHHHH
Confidence 34566677777888888888888888776432 3322 1223333444333221 13677777
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCC
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIP 280 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (764)
.++.+.|++++|...++..++..+.+..++..+..+|...|++++|...|++..+ +.|+..
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~----------------- 298 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDK----------------- 298 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCH-----------------
Confidence 7888899999999999988887788888899999999999999999999998876 444431
Q ss_pred ccCCccccchhhhhhHHHHHHH-HHccCCHHHHHHHHHHHHHC
Q 004269 281 IPLNALPVMKVLRWSFSDVIHA-CGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~ 322 (764)
..+..+... ....+..+.+..+|..|...
T Consensus 299 -------------~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 299 -------------AIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------------------------------
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 244444444 23445667777777777653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0049 Score=52.85 Aligned_cols=63 Identities=10% Similarity=0.003 Sum_probs=54.9
Q ss_pred HhhHHHHHHHhhccCCHHHHHHHHHHHHHhhc-------cCcchhcccccccccccccCCCccCCccccchhhhhhH---
Q 004269 227 IFSLRKFVWSFTRLRDLKSAYETLQHMVALAM-------MGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSF--- 296 (764)
Q Consensus 227 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 296 (764)
...|+.+..++.+.|++++|+..+++..+ + .|+. ...|
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n~~~e~~pd~------------------------------~~A~~~~ 104 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALH--YFNRRGELNQDE------------------------------GKLWISA 104 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHCCTTSTH------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhccccCCCch------------------------------HHHHHHH
Confidence 34899999999999999999999999998 5 6655 2577
Q ss_pred -HHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 297 -SDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 297 -~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
.....++...|++++|+..|++..+
T Consensus 105 ~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 105 VYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8899999999999999999999876
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0012 Score=66.32 Aligned_cols=148 Identities=11% Similarity=-0.085 Sum_probs=80.5
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
...+..+...+.+.|+++.|...|++.++.. |+... +...|+.+++...+. ...|+.+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 3446777788889999999999999988763 44331 233344444433221 126777777
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHH-hhccCCHHH
Q 004269 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS-FTRLRDLKS 245 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~ 245 (764)
+|.+.|++++|+..++...+... .+...|..+..++...|++++|...|+...+..+.+..++..+..+ ....+..+.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888776532 2566777777888888888888888888877666666666666665 334556777
Q ss_pred HHHHHHHHHH
Q 004269 246 AYETLQHMVA 255 (764)
Q Consensus 246 A~~~~~~~~~ 255 (764)
+..+|..|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 7888888776
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0023 Score=65.07 Aligned_cols=122 Identities=6% Similarity=-0.062 Sum_probs=98.9
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHhhc--------------CCC-CChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCC
Q 004269 160 VYNSFLGACAKLHSMVHANLCLDLMDSR--------------MVG-KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS 224 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 224 (764)
.+..+...+.+.|++++|+..|+...+. ... .+..+|..+..++.+.|++++|...++..++..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 4777888899999999999999988761 011 2456788888889999999999999999999888
Q ss_pred CCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHH
Q 004269 225 LSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACG 304 (764)
Q Consensus 225 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 304 (764)
.+..++..+..+|...|++++|...|++..+ +.|+. ...+..+...+.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~------------------------------~~~~~~l~~~~~ 352 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPED------------------------------KAIQAELLKVKQ 352 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCC------------------------------HHHHHHHHHHHH
Confidence 8899999999999999999999999999988 55554 146666666666
Q ss_pred ccCCHHHHH
Q 004269 305 RTQNSGLAE 313 (764)
Q Consensus 305 ~~~~~~~a~ 313 (764)
..++.+++.
T Consensus 353 ~~~~~~~a~ 361 (370)
T 1ihg_A 353 KIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0024 Score=67.14 Aligned_cols=131 Identities=9% Similarity=-0.023 Sum_probs=88.3
Q ss_pred HHhhCChhHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC---C-HHHHHH
Q 004269 554 CSIIRCFKSASALVSMMVRD---GFYP----QTMTYTALIKILLDYGDFDEALNLLDLVSLE---GIPH---D-VLLYNT 619 (764)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~---g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p---~-~~~~~~ 619 (764)
+...|++++|+.++++..+. -+.| ...+++.|..+|...|++++|+.++++.++. -+.| + ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667888888888766643 1112 2456788888888888888888888876531 1122 2 347888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHhhhcccc
Q 004269 620 ILKKACEKGRIDVIEFIIEQMHQ---NKVQPDPS----TCHFVFSGYVNCGFHNSAMEALQVLSMRMLCEEV 684 (764)
Q Consensus 620 li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 684 (764)
|...|...|++++|+.++++..+ .-+.||.. +...+-.++...|.+++|..++++++++.++..+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88889999999999988888764 11223322 2233445777889999999999998876654443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.021 Score=61.58 Aligned_cols=120 Identities=7% Similarity=-0.168 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC--CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhc-ChhHHHH
Q 004269 138 LEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH--SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK-NLSAVHE 214 (764)
Q Consensus 138 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~ 214 (764)
++++.+.++.+.+.+ +-+..+|+.-..++.+.+ +++++++.++.+.+..+. +..+|+.--.++...| .++++.+
T Consensus 89 ~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHH
Confidence 444444444444322 123334444444444444 335555555555444322 4444444444444444 4455555
Q ss_pred HHHHHHhcCCCCHhhHHHHHHHhhc--------------cCCHHHHHHHHHHHHHhhccCcc
Q 004269 215 IWEDYIKHYSLSIFSLRKFVWSFTR--------------LRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~li~~~~~--------------~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
.++.+++..+.+..+|+....++.+ .+.++++.+.+++..+ ..|+.
T Consensus 166 ~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~--~~P~~ 225 (567)
T 1dce_A 166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPND 225 (567)
T ss_dssp HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH--HCSSC
T ss_pred HHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh--hCCCC
Confidence 5555555555555555555444433 2567889999988887 56655
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00099 Score=70.03 Aligned_cols=98 Identities=5% Similarity=-0.156 Sum_probs=48.7
Q ss_pred HHHHhhcccchhhhhccccccchhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhcccc-----C--CCCC
Q 004269 14 ADSFCKSKFHKHERRNVANKLELSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHA-----H--HSLG 86 (764)
Q Consensus 14 ~~~~~~~g~~~~a~~~~~~~~~~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~ 86 (764)
+..+..+|++++|. .++++.. .....++|-.......+++.+...|...|++++|..++++.... | .+-.
T Consensus 316 a~~~~~qg~~~eA~-~l~~~aL--~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 316 IDKARSEGLYHEVV-KLCRECL--EKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHTTTCHHHHH-HHHHHHH--HHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHhCCCHHHHH-HHHHHHH--HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 34466788888887 5554443 22233444333344555555556666666666666655544321 1 1111
Q ss_pred hhcHHHHHHHhhCCCChhHHHHHHHHHH
Q 004269 87 ADDFFHILNYCARSPDPLFVMETWRMME 114 (764)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 114 (764)
..+++.|...|...|++++|..++++..
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2234444455555555555554444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00053 Score=55.61 Aligned_cols=92 Identities=12% Similarity=0.012 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------H
Q 004269 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDP-------S 650 (764)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~ 650 (764)
+...|..+...+.+.|++++|.+.+++..+.. +.+...|..+...+...|++++|++.+++.++ ..|+. .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHH
Confidence 45567777788888888888888888887642 34677888888888888888888888888885 45553 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHH
Q 004269 651 TCHFVFSGYVNCGFHNSAMEAL 672 (764)
Q Consensus 651 ~~~~ll~~~~~~g~~~~a~~~~ 672 (764)
.+..+..++...|++++|.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 3333444555555555554433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.016 Score=62.43 Aligned_cols=181 Identities=9% Similarity=-0.116 Sum_probs=139.3
Q ss_pred HHHHHhhCC-cchHHHHHHhccccCCCCChhcHHHHHHHhhCCCC----------hhHHHHHHHHHHHcCccccHHHHHH
Q 004269 59 IVDALCRGE-RSRASHLLLNLGHAHHSLGADDFFHILNYCARSPD----------PLFVMETWRMMEEKEIGLNNKCYLL 127 (764)
Q Consensus 59 i~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~ 127 (764)
+.+..+.|. .++|++.++.+...+ +-+...|+.--.++...++ ++++++.++.+.+.+ +-+..+|+.
T Consensus 35 ~~~~~~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~h 112 (567)
T 1dce_A 35 VFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 112 (567)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 344455555 578899999999876 3334455554444444455 889999999999875 557778888
Q ss_pred HHHHHHccC--CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 004269 128 MMQALCKGG--YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLH-SMVHANLCLDLMDSRMVGKNEVTYTELLKLAV 204 (764)
Q Consensus 128 li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 204 (764)
-.-.+.+.| +++++.+.++++.+.+ +-|..+|+.-..++.+.| .++++++.++.+.+..+. +..+|+.....+.
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~ 189 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLP 189 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHH
Confidence 888888889 7799999999998765 346678888777778888 899999999999887554 7778887776665
Q ss_pred hh--------------cChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHH
Q 004269 205 WQ--------------KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244 (764)
Q Consensus 205 ~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 244 (764)
.. +.++++.+.+....+..|.|..+|+.+-..+.+.+..+
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 190 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred hhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 53 55788999999988888889999999888888777643
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0016 Score=53.21 Aligned_cols=78 Identities=9% Similarity=-0.144 Sum_probs=44.1
Q ss_pred hHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 004269 70 RASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLG 149 (764)
Q Consensus 70 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 149 (764)
.|+..|+...... +.+...+..+..++...|+++.|...+++..+.+ +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555443 3344555555556666666666666666666553 3344455556666666666666666666554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0017 Score=52.54 Aligned_cols=65 Identities=17% Similarity=-0.123 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..|+...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455566666666667777766666665432 224455666666666667777776666666653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.014 Score=49.41 Aligned_cols=112 Identities=7% Similarity=-0.138 Sum_probs=91.5
Q ss_pred hCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 004269 557 IRCFKSASALVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACE----KGRIDV 632 (764)
Q Consensus 557 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~ 632 (764)
.+++++|..+|++..+.| .|+.. |...|...+.+++|.++|++..+.| ++..+..|-..|.. .++.++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 357889999999999987 33333 7777888888999999999998764 67788888888888 889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhh
Q 004269 633 IEFIIEQMHQNKVQPDPSTCHFVFSGYVN----CGFHNSAMEALQVLSMRM 679 (764)
Q Consensus 633 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~ 679 (764)
|.++|++..+.| +...+..|-..|.. .+++++|.+++++--..+
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999999999865 45666677778888 899999999999765544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0029 Score=54.14 Aligned_cols=113 Identities=14% Similarity=0.065 Sum_probs=80.9
Q ss_pred hhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCC----------HHHHHHHHHHHHHhhccCcchhcccccccccc
Q 004269 205 WQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD----------LKSAYETLQHMVALAMMGKLYINRTSEGRLRS 274 (764)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (764)
+.+.+++|.+.++...+..+.+...|..+..++...++ +++|+..|++..+ +.|+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~------------ 79 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKK------------ 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTC------------
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCc------------
Confidence 44556677777777777677777777777777776665 4699999999998 67765
Q ss_pred cccCCCccCCccccchhhhhhHHHHHHHHHccC-----------CHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCC
Q 004269 275 SRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQ-----------NSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRG 343 (764)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 343 (764)
..+|..+..+|...| ++++|++.|++..+. .|+...|...+..+
T Consensus 80 ------------------~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~----- 134 (158)
T 1zu2_A 80 ------------------DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT----- 134 (158)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH-----
T ss_pred ------------------HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH-----
Confidence 258889999998764 899999999999884 67777666555533
Q ss_pred hhHHHHHHHHHHHC
Q 004269 344 LRNGMEVLKIMQQN 357 (764)
Q Consensus 344 ~~~a~~~~~~~~~~ 357 (764)
+++.+++-.+...
T Consensus 135 -~ka~el~~~~~~~ 147 (158)
T 1zu2_A 135 -AKAPQLHAEAYKQ 147 (158)
T ss_dssp -HTHHHHHHHHHHS
T ss_pred -HhCHhccCccccc
Confidence 4445555544443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0067 Score=49.38 Aligned_cols=78 Identities=8% Similarity=-0.010 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchh
Q 004269 212 VHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKV 291 (764)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (764)
+...++...+..+.+...+..+..+|...|++++|...|++..+ ..|+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~----------------------------- 52 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTY----------------------------- 52 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC-----------------------------
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCc-----------------------------
Confidence 44555555555555566666666666666666666666666665 33332
Q ss_pred hhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 292 LRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 292 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
...|..+..++...|++++|...|++..+
T Consensus 53 -~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 53 -SVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13566666666666666666666666554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.73 E-value=1.7e-06 Score=86.26 Aligned_cols=206 Identities=12% Similarity=0.059 Sum_probs=120.4
Q ss_pred HHHHHHHhhcccchhhhhccccccc-hhhhhccccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhc
Q 004269 11 QLIADSFCKSKFHKHERRNVANKLE-LSRTLTTTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADD 89 (764)
Q Consensus 11 ~~~~~~~~~~g~~~~a~~~~~~~~~-~~r~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 89 (764)
-..-..|-+-+...+|.+.+++.+. ..|.+.-+..++ ....|..+..+....++..+|++.|-+. -|+..
T Consensus 15 ~~AF~iykKf~~~~~A~~VL~e~i~~ldRa~eyA~~~n---~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~ 85 (624)
T 3lvg_A 15 VPRGSHMLKFDVNTSAVQVLIEHIGNLDRAYEFAERCN---EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSS 85 (624)
T ss_dssp ------------CCSTTTTCCGGGCCSTTTTTSSSSCC---CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCS
T ss_pred chHHHHHHhccCcHHHHHHHHHhccccHHHHHHHHHhC---CccHHHHHHHHHHccCchHHHHHHHHhC------CChHH
Confidence 3344556677777788855566553 234333333332 2356777788888888888888766332 46667
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHh
Q 004269 90 FFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACA 169 (764)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 169 (764)
|..++.++.+.|.++.....+.-..+. ..++.+=+.|+-+|++.++..+-++++. .||..-...+..-|.
T Consensus 86 y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~--------~~N~A~iq~VGDrcf 155 (624)
T 3lvg_A 86 YMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCY 155 (624)
T ss_dssp SSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS--------CCSSSCTHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc--------CCCcccHHHHHHHHH
Confidence 889999999999999888887765554 3344555688888999888766444321 366666777777777
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHH
Q 004269 170 KLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYET 249 (764)
Q Consensus 170 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 249 (764)
..|.++.|.-+|..+.. |..|-..+...|++..|.+.-. -..++.+|-.+-.+|...+++.-|.-.
T Consensus 156 ~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaAr-----KAns~ktWKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 156 DEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGAR-----KANSTRTWKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp HSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTT-----TCCSSCSHHHHTHHHHHSCTTTTTTHH
T ss_pred HccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHH-----hcCChhHHHHHHHHHhCchHHHHHHHh
Confidence 78888777776655433 2222233444455444332211 234555666666666666666655444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0093 Score=45.79 Aligned_cols=78 Identities=15% Similarity=0.021 Sum_probs=39.5
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHH
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGAC 168 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 168 (764)
.+..+...+...|+++.|...+++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+..++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 34444455555555555555555555543 2344455555556666666666666666554432 12333444444444
Q ss_pred h
Q 004269 169 A 169 (764)
Q Consensus 169 ~ 169 (764)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.012 Score=45.06 Aligned_cols=64 Identities=14% Similarity=-0.076 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhc
Q 004269 122 NKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...|+...+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4455566666666666777766666665432 223445556666666666666666666665553
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.006 Score=48.22 Aligned_cols=60 Identities=15% Similarity=-0.084 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHH
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLM 184 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 184 (764)
..+..+...|...|++++|+..|++..+.+ +.+...|..+..+|.+.|++++|...|+..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444444443322 112223444444444444444444444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.012 Score=50.23 Aligned_cols=88 Identities=7% Similarity=-0.102 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcC----------hhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc-
Q 004269 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN----------LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL- 240 (764)
Q Consensus 172 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~- 240 (764)
+.+++|.+.++...+..+. +...|..+-.++...++ +++|+..|++.++-.+.+..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 3344444444444443221 33344444444444333 45777777777777777777888888888766
Q ss_pred ----------CCHHHHHHHHHHHHHhhccCcc
Q 004269 241 ----------RDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 241 ----------g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
|++++|.+.|++..+ +.|+.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~ 124 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVD--EQPDN 124 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred ccCcchhhhhccHHHHHHHHHHHHH--hCCCC
Confidence 489999999999988 67765
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.24 Score=40.10 Aligned_cols=138 Identities=12% Similarity=0.046 Sum_probs=100.1
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHH
Q 004269 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (764)
.|..++..++..+..... +..-||..|--....-+-+-..++++.+..-+.+. ..|++.....
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrVi~ 82 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSVVE 82 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHHHH
Confidence 478888888888877653 55666666666666667777777888776544322 2344444444
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhcc
Q 004269 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM 259 (764)
Q Consensus 180 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 259 (764)
.+-.+- .+..-....+.....+|.-++-.+++..+....+|++...-.+..+|.+.|+..+|.+++.+.-++|++
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 333321 244555667778888999999999999988888999999999999999999999999999999998875
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.51 Score=46.61 Aligned_cols=141 Identities=13% Similarity=0.013 Sum_probs=68.4
Q ss_pred CCChhhHHHHHHHHHH--cC---ChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---hC--ChhHHH---HHHHHHH
Q 004269 506 PLGTPTYNTVLHSLVE--AQ---ESHRAMEIFKQMKTCGIPPNA-ATYNIMIDCCSI---IR--CFKSAS---ALVSMMV 571 (764)
Q Consensus 506 ~~~~~~~~~li~~~~~--~~---~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~---~g--~~~~a~---~~~~~~~ 571 (764)
+.+...|...+.+... .+ ...+|..+|++..+. .|+- ..+..+..+|.. .+ ...... .-+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 4466677777765433 22 347788888888875 4553 344433333321 01 000110 1111111
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004269 572 RD-GFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 572 ~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
.. .-+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++... +.|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcC
Confidence 10 113344555555444444556666666665555442 5555555555555555666666655555553 345544
Q ss_pred HH
Q 004269 651 TC 652 (764)
Q Consensus 651 ~~ 652 (764)
+|
T Consensus 345 t~ 346 (372)
T 3ly7_A 345 TL 346 (372)
T ss_dssp HH
T ss_pred hH
Confidence 43
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.026 Score=44.48 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 195 TYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.+..+...+...|++++|...|+..++..+.+..+|..+..+|...|++++|...|++..+
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444444445555555555544444444445555555555555555555555555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.31 Score=55.42 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=61.4
Q ss_pred HHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHH
Q 004269 487 LGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASAL 566 (764)
Q Consensus 487 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 566 (764)
....|++++|.++.+.. .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+....+
T Consensus 662 ~l~~~~~~~A~~~~~~~---~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE---SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHTCHHHHHHHHTTC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh---CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 34567777777776544 3556788888888888888888888887643 33444455556666655555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004269 567 VSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604 (764)
Q Consensus 567 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 604 (764)
-+.....|- ++....+|.+.|++++|++++.+
T Consensus 730 ~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 730 AKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 544444431 23344445556666666655543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.78 E-value=1.1e-05 Score=80.44 Aligned_cols=79 Identities=10% Similarity=0.122 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004269 581 TYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYV 660 (764)
Q Consensus 581 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 660 (764)
.-..-...|.+.++++++..+.++ .+ .|.-.|...+..|+.+-++++++-..+.| +..+|...+-.|.
T Consensus 456 FRrIAA~LYkkn~rw~qsi~l~Kk---Dk------lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCY 523 (624)
T 3lvg_A 456 FRRIAAYLFKGNNRWKQSVELCKK---DS------LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCY 523 (624)
T ss_dssp HHHHHHHHHHTTCHHHHHSSCSST---TC------CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcccHHHHHHHHHh---cc------cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHh
Confidence 334445567788888888876543 22 23334556677899999999999988755 4466777777777
Q ss_pred hcCChHHHHHH
Q 004269 661 NCGFHNSAMEA 671 (764)
Q Consensus 661 ~~g~~~~a~~~ 671 (764)
..=+.+-++++
T Consensus 524 dLlrpDvVlEl 534 (624)
T 3lvg_A 524 DLLRPDVVLET 534 (624)
T ss_dssp SSSSCHHHHHH
T ss_pred hccChHHHHHH
Confidence 77777777664
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.15 Score=50.41 Aligned_cols=144 Identities=10% Similarity=0.040 Sum_probs=87.8
Q ss_pred CCCChhhHHHHHHHHHh--h---cChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc---C-----CHHHHHHHHHHHHH
Q 004269 189 VGKNEVTYTELLKLAVW--Q---KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL---R-----DLKSAYETLQHMVA 255 (764)
Q Consensus 189 ~~p~~~t~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---g-----~~~~A~~~~~~~~~ 255 (764)
.+.+...|...+++... . .++.+|..+|++.++..|.....+..+..+|.-. + ........+.....
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 34466677777765432 2 2346777788888777776666666555554310 0 11111112221111
Q ss_pred hhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHH
Q 004269 256 LAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFI 335 (764)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 335 (764)
....|.. ..+|.++...+...|++++|...+++....+ |+...|..+-
T Consensus 270 ~~~~~~~------------------------------a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG 317 (372)
T 3ly7_A 270 LPELNNL------------------------------SIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLG 317 (372)
T ss_dssp CGGGTTC------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred cccCCcC------------------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHH
Confidence 1122222 2577777777777789999999999888864 6766666667
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 004269 336 RAIVSDRGLRNGMEVLKIMQQNNLKPQDSTI 366 (764)
Q Consensus 336 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 366 (764)
..+.-.|++++|.+.+++....+ |...+|
T Consensus 318 ~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~ 346 (372)
T 3ly7_A 318 KVYEMKGMNREAADAYLTAFNLR--PGANTL 346 (372)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--CSHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CCcChH
Confidence 77778889999998888887754 344444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.11 Score=53.37 Aligned_cols=85 Identities=7% Similarity=-0.019 Sum_probs=45.8
Q ss_pred hCChhHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHH
Q 004269 557 IRCFKSASALVSMMVRD---GFYPQ----TMTYTALIKILLDYGDFDEALNLLDLVSLE-----G-IPHD-VLLYNTILK 622 (764)
Q Consensus 557 ~g~~~~a~~~~~~~~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~li~ 622 (764)
.|++++|..++++..+. -+.|+ ..+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666666666555432 11122 345566666666666666666666665421 1 1111 234566666
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 004269 623 KACEKGRIDVIEFIIEQMH 641 (764)
Q Consensus 623 ~~~~~g~~~~a~~~~~~m~ 641 (764)
.|...|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666666554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.073 Score=41.46 Aligned_cols=57 Identities=16% Similarity=-0.041 Sum_probs=30.8
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCChh-hhHHHHHHHhccCCHHHHHHHHHHHhhc
Q 004269 129 MQALCKGGYLEEASNLIYFLGERYGIYPILP-VYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
...+...|++++|...|++..+.. +.+.. .|..+..+|...|++++|+..|+...+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344555566666666666554432 22334 5555555555666666666666655553
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.14 Score=52.77 Aligned_cols=88 Identities=8% Similarity=-0.045 Sum_probs=42.1
Q ss_pred HHhhCChhHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHH
Q 004269 554 CSIIRCFKSASALVSMMVRDG---FYPQ----TMTYTALIKILLDYGDFDEALNLLDLVSLE-----G-IPHD-VLLYNT 619 (764)
Q Consensus 554 ~~~~g~~~~a~~~~~~~~~~g---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~ 619 (764)
+...|++++|..++++..+.. +.|+ ..+++.|..+|...|++++|+.++++.+.- | -.|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 334455555555555555321 1111 234555555555555555555555554321 1 0111 224555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 004269 620 ILKKACEKGRIDVIEFIIEQMH 641 (764)
Q Consensus 620 li~~~~~~g~~~~a~~~~~~m~ 641 (764)
|...|...|++++|+.++++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 5555555555555555555544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.078 Score=54.60 Aligned_cols=86 Identities=15% Similarity=0.043 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHhhh--cCCC---CC-hhhhHHHHHHHhccCCHHHHHHHHHHHhhc-----CC-CCC-hhhHHHHHHH
Q 004269 136 GYLEEASNLIYFLGER--YGIY---PI-LPVYNSFLGACAKLHSMVHANLCLDLMDSR-----MV-GKN-EVTYTELLKL 202 (764)
Q Consensus 136 g~~~~A~~~~~~m~~~--~~~~---~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~t~~~ll~~ 202 (764)
|++++|+.++++..+. .-+. |+ ..+++.|..+|...|++++|+.++++.... |. .|+ ..+++.|-..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4566666666554321 1111 22 235666666677777777776666665431 21 222 2356666666
Q ss_pred HHhhcChhHHHHHHHHHHh
Q 004269 203 AVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~ 221 (764)
|...|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777777666654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.078 Score=54.71 Aligned_cols=92 Identities=16% Similarity=-0.087 Sum_probs=61.4
Q ss_pred HHhhCCCChhHHHHHHHHHHHcC-------ccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhh----c-CCCCCh-hhh
Q 004269 95 NYCARSPDPLFVMETWRMMEEKE-------IGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER----Y-GIYPIL-PVY 161 (764)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~-~~~ 161 (764)
..+.+.|++++|..++++.++.. .+....+++.|..+|...|++++|+.++++..+. . ...|++ .++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445677778888877776531 1223457778888888888888888888766431 1 122332 367
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhh
Q 004269 162 NSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 162 ~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
+.|...|...|++++|+.++++..+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8888888888888888888877654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.31 Score=37.43 Aligned_cols=66 Identities=12% Similarity=-0.076 Sum_probs=40.1
Q ss_pred CChhcHHHHHHHhhCCCC---hhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 004269 85 LGADDFFHILNYCARSPD---PLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGER 151 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 151 (764)
.++..+..+..++...++ .+.|..++++.++.+ +-++.....+...+.+.|++++|+..|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445555555555543322 566777777777664 445556666666677777777777777776543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.4 Score=36.84 Aligned_cols=64 Identities=14% Similarity=-0.033 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004269 578 QTMTYTALIKILLDYGD---FDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 578 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
++..+..+..++...++ .++|..++++.++.. +-++..+..+...+.+.|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444443332 455555555555432 22344555555555555566666665555554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.43 E-value=0.46 Score=40.07 Aligned_cols=85 Identities=11% Similarity=-0.003 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 004269 561 KSASALVSMMVRDGFYPQTMTYTALIKILLDYG---DFDEALNLLDLVSLEGIPH--DVLLYNTILKKACEKGRIDVIEF 635 (764)
Q Consensus 561 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~ 635 (764)
..+.+-|.+..+.|. ++..+...+..++++++ +++++..+++...+.. .| +...+-.|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344444444444443 45555555555666655 4446666666655432 12 12233334445566666666666
Q ss_pred HHHHHHHCCCCCCH
Q 004269 636 IIEQMHQNKVQPDP 649 (764)
Q Consensus 636 ~~~~m~~~~~~p~~ 649 (764)
.++.+++ +.|+.
T Consensus 93 y~~~lL~--ieP~n 104 (152)
T 1pc2_A 93 YVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHH--HCTTC
T ss_pred HHHHHHh--cCCCC
Confidence 6666664 44543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.29 E-value=0.57 Score=53.26 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=102.7
Q ss_pred HHhcCcHHHHHH-HHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHH
Q 004269 487 LGAEGMIRELIQ-YFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565 (764)
Q Consensus 487 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 565 (764)
....+++++|.+ ++..+ ++......++..+.+.|..++|+++.+. | ..- .......|+++.|++
T Consensus 609 ~~~~~~~~~a~~~~l~~i---~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~-~~~----f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV---EGKDSLTKIARFLEGQEYYEEALNISPD-------Q-DQK----FELALKVGQLTLARD 673 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC---CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------H-HHH----HHHHHHHTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcC---CchHHHHHHHHHHHhCCChHHheecCCC-------c-chh----eehhhhcCCHHHHHH
Confidence 345788888887 55332 1122337777888888999999876632 1 111 233456799999998
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004269 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKV 645 (764)
Q Consensus 566 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 645 (764)
+.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+.....|.
T Consensus 674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 86543 4778999999999999999999999998741 34455555567777776666666655442
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004269 646 QPDPSTCHFVFSGYVNCGFHNSAMEALQVL 675 (764)
Q Consensus 646 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 675 (764)
++.-..+|.+.|++++|.+++.++
T Consensus 739 ------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 739 ------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 222334566677777777777644
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.28 E-value=4.8 Score=41.50 Aligned_cols=168 Identities=7% Similarity=0.030 Sum_probs=91.7
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHhc-CCCC-----HhhHHHHHHHhhccCCHHHHHHHHHHHHHhhcc-Ccchhcccccc
Q 004269 198 ELLKLAVWQKNLSAVHEIWEDYIKH-YSLS-----IFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM-GKLYINRTSEG 270 (764)
Q Consensus 198 ~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 270 (764)
.|.+.+...|++.+|..++..+... ...+ ...+...++.|...+++..|..++.++...-.. +..
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~-------- 213 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY-------- 213 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC--------
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc--------
Confidence 3455566666666666666666532 1111 235666777888889999998888887542211 111
Q ss_pred cccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCcccHHHH----HHHHHhcCChh
Q 004269 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG-LQPSSHTYDGF----IRAIVSDRGLR 345 (764)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l----l~~~~~~~~~~ 345 (764)
.+.-...|...+..+...+++.+|...|.+....- +.-|...+..+ +....-.+...
T Consensus 214 ------------------~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~ 275 (445)
T 4b4t_P 214 ------------------ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGN 275 (445)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSS
T ss_pred ------------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCc
Confidence 01112466777788888999999988887775421 11122222222 11111222222
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhh
Q 004269 346 NGMEVLKIMQQNNLKPQDSTIATLSVECSKA--LELDLAEALLDQISR 391 (764)
Q Consensus 346 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~ 391 (764)
.-..+..........++...|..++.+|... .+++.+...|.....
T Consensus 276 ~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 276 LQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp TTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred hHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 2222333332222234667788888888765 356666666655433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=3 Score=39.49 Aligned_cols=85 Identities=7% Similarity=-0.041 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHhcCCC--CHhhHHHHHHHhhcc-----CCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCcc
Q 004269 210 SAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRL-----RDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282 (764)
Q Consensus 210 ~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (764)
..|..++++.++-.+. +...|..|...|... |+.++|.+.|++..+ +.|+..+
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~i------------------ 239 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDP------------------ 239 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCS------------------
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCc------------------
Confidence 3555555555554443 456778888888774 888888888888887 5553200
Q ss_pred CCccccchhhhhhHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCC
Q 004269 283 LNALPVMKVLRWSFSDVIHACGRT-QNSGLAEQLMLQMQSLGLQ 325 (764)
Q Consensus 283 ~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~ 325 (764)
.++......++.. |+.+.+.+.+++.......
T Consensus 240 -----------d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 240 -----------DHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp -----------HHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred -----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 3555666777664 7788888888888776544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.10 E-value=2 Score=34.95 Aligned_cols=65 Identities=15% Similarity=0.038 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhc
Q 004269 616 LYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFSGYVNCGFHNSAMEALQVLSMRMLC 681 (764)
Q Consensus 616 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 681 (764)
.+...++....+|+.+.-.+++..+.. +-+|++....-+..+|.+-|+..+|.+++.+.-++|++
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 334444445555555555555555322 23444555445555555555555555555555544443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.18 Score=39.12 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=29.8
Q ss_pred HHhhcChhHHHHHHHHHHhcCCCCHh-hHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 203 AVWQKNLSAVHEIWEDYIKHYSLSIF-SLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
+...|++++|...++...+..+.+.. .+..+..+|...|++++|...|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555555555554444555 555555556666666666666666555
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.98 E-value=0.36 Score=40.69 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=29.4
Q ss_pred ChhhHHHHHHHHHhhc---ChhHHHHHHHHHHhcCCC--CHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 192 NEVTYTELLKLAVWQK---NLSAVHEIWEDYIKHYSL--SIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 192 ~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
+..+...+-.++++++ +++++..+++...+...| ....+-.|.-+|.+.|++++|.+.++.+.+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3333333333444433 333444444444443312 233334444455555566666666655555
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.55 E-value=1.6 Score=37.89 Aligned_cols=46 Identities=11% Similarity=0.013 Sum_probs=24.6
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHh
Q 004269 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMD 185 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 185 (764)
...|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|....
T Consensus 16 L~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3455555555554433 244455555555555555555555555443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.31 E-value=0.84 Score=35.82 Aligned_cols=71 Identities=10% Similarity=0.138 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004269 578 QTMTYTALIKILLDYGDFDEALNLLDLVSLEG------IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPS 650 (764)
Q Consensus 578 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 650 (764)
+..-+..|...+.+.|+++.|...++...+.. -.+...++..|..++.+.|+++.|...++++.+ +.|+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 33444556667777777777777777665420 123455677777777777777777777777764 456543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.18 E-value=3.9 Score=35.42 Aligned_cols=101 Identities=6% Similarity=0.029 Sum_probs=62.1
Q ss_pred HHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHH
Q 004269 486 ALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASA 565 (764)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 565 (764)
....+|+++.|.++.+.. .+...|..+.......|+++-|.+.|..... |..+.-.|...|+.+.-..
T Consensus 14 LAL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 344667777777776554 2455777777777777777777777776543 3344445555666666555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004269 566 LVSMMVRDGFYPQTMTYTALIKILLDYGDFDEALNLLDL 604 (764)
Q Consensus 566 ~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 604 (764)
+-+.....|- ++.....+.-.|+++++.++|.+
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555444431 34445555566777777777654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.15 E-value=0.71 Score=36.26 Aligned_cols=66 Identities=6% Similarity=-0.112 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHhhhc-----CCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhh
Q 004269 121 NNKCYLLMMQALCKGGYLEEASNLIYFLGERY-----GIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
+...+..|...+.+.|+++.|..+|+...+.. +-.+...++..|..++.+.|+++.|...++...+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33444455555666666666666665554321 0112334555566666666666666666666555
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=1.5 Score=41.46 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=27.7
Q ss_pred HHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHC
Q 004269 581 TYTALIKILLD-----YGDFDEALNLLDLVSLEGIPH--DVLLYNTILKKACEK-GRIDVIEFIIEQMHQN 643 (764)
Q Consensus 581 ~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~ 643 (764)
.|..|...|.+ -|+.++|.+.|++.++. .| +..++....+.++.. |+.+++.+.+++.+..
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 44444444444 24555555555554432 22 233444444444442 4555555555555443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.86 E-value=13 Score=38.26 Aligned_cols=51 Identities=10% Similarity=0.067 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHHhhc-----CCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHh
Q 004269 171 LHSMVHANLCLDLMDSR-----MVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIK 221 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (764)
.|+++.|++.+-.+.+. ...........++..|...++++...+.+..+.+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 36788888877666542 2233445567778888888888877776665554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.82 E-value=2 Score=35.76 Aligned_cols=102 Identities=13% Similarity=0.154 Sum_probs=48.1
Q ss_pred CCChhhHHHHHHHHHHcCCh------HHHHHHHHHHHhCCCCCCHH----HHHHHHHH---HHhhCChhHHHHHHHHHHH
Q 004269 506 PLGTPTYNTVLHSLVEAQES------HRAMEIFKQMKTCGIPPNAA----TYNIMIDC---CSIIRCFKSASALVSMMVR 572 (764)
Q Consensus 506 ~~~~~~~~~li~~~~~~~~~------~~A~~l~~~m~~~g~~p~~~----t~~~ll~~---~~~~g~~~~a~~~~~~~~~ 572 (764)
+.|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|.-+.-- +...+++++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33455666666665555666 5666666665553 444321 11111110 1122455555555555544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004269 573 DGFYPQTMTYTALIKILLDYGDFDEALNLLDLVSLEG 609 (764)
Q Consensus 573 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 609 (764)
.+-+. ...|-....-=.+.|+++.|.+++.+.+..+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 32222 4444444444445555555555555555433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.36 E-value=2.1 Score=34.63 Aligned_cols=83 Identities=8% Similarity=-0.045 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCC-CHHHH-HHHHHHHHhcCChHH
Q 004269 593 GDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDV---IEFIIEQMHQNKVQP-DPSTC-HFVFSGYVNCGFHNS 667 (764)
Q Consensus 593 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p-~~~~~-~~ll~~~~~~g~~~~ 667 (764)
..+..+.+-|.+....| .|+..+--.+.+++.+..+... ++.+++.+...+ .| +..-+ +.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 34444555555554434 2666666666667777665544 777777766532 23 23333 333347778888888
Q ss_pred HHHHHHHHHH
Q 004269 668 AMEALQVLSM 677 (764)
Q Consensus 668 a~~~~~~~~~ 677 (764)
|+++++.+..
T Consensus 93 A~~~~~~lL~ 102 (126)
T 1nzn_A 93 ALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877776543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.90 E-value=13 Score=40.91 Aligned_cols=54 Identities=7% Similarity=-0.012 Sum_probs=40.3
Q ss_pred HHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHH
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMV 254 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 254 (764)
+.+...|+++.|+.+-.+.+.-.|.+-.+|..|..+|...|+++.|+-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345567777777777777777677777788888888888888888877777764
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=90.28 E-value=2.2 Score=35.50 Aligned_cols=103 Identities=8% Similarity=0.077 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHhhCCh------hHHHHHHHHHHHCCCCCCH-HHHHHHHHHH------HhcCCHHHHHHHHHHHHHCC
Q 004269 543 NAATYNIMIDCCSIIRCF------KSASALVSMMVRDGFYPQT-MTYTALIKIL------LDYGDFDEALNLLDLVSLEG 609 (764)
Q Consensus 543 ~~~t~~~ll~~~~~~g~~------~~a~~~~~~~~~~g~~p~~-~~~~~li~~~------~~~g~~~~A~~~~~~m~~~~ 609 (764)
|..++-..+....+.|+. ++.+++|+..... ++|+. ..|...|..+ ...+++++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445565666666666766 6777777777764 45542 1222222222 23478888888888886542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004269 610 IPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQP 647 (764)
Q Consensus 610 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 647 (764)
-+- ...|.....--.++|+++.|.+++.+.+..+.+|
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 222 6777777777778888888888888888655443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.43 E-value=2.3 Score=34.42 Aligned_cols=84 Identities=10% Similarity=-0.088 Sum_probs=50.7
Q ss_pred CcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhH---HHHHHHHHHHcCcc-ccHHHHHHHHHHHHccCCHHHHH
Q 004269 67 ERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLF---VMETWRMMEEKEIG-LNNKCYLLMMQALCKGGYLEEAS 142 (764)
Q Consensus 67 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~ 142 (764)
....+.+.|......+ .++..+-..+..++.++.+... ++.+++...+.+.+ ......-.|.-++.+.|++++|+
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444555555544444 3666665556666666665554 77777777776421 12333335555777888888888
Q ss_pred HHHHHHhhh
Q 004269 143 NLIYFLGER 151 (764)
Q Consensus 143 ~~~~~m~~~ 151 (764)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888877654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.06 E-value=3.9 Score=31.20 Aligned_cols=59 Identities=10% Similarity=0.118 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004269 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656 (764)
Q Consensus 597 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 656 (764)
+..+-++.+....+-|++.+..+.+++|.+.+++..|.++++-.+.+ +.+...+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 44555555555666777777777777777777777777777766653 333344455544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.45 E-value=2.8 Score=45.98 Aligned_cols=125 Identities=9% Similarity=-0.061 Sum_probs=75.0
Q ss_pred HHHHHhccCC-HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChh-HHHHHHHHHHh-------cCCC-CH------
Q 004269 164 FLGACAKLHS-MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS-AVHEIWEDYIK-------HYSL-SI------ 227 (764)
Q Consensus 164 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~-------~~~~-~~------ 227 (764)
|++.+...++ ++.|..+|+.+....+..+......++..+...++-+ +|.+++.+..+ ..++ +.
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 3333334455 5778888888887633222222223333333332211 33333333322 1111 11
Q ss_pred ----hhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHH
Q 004269 228 ----FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHAC 303 (764)
Q Consensus 228 ----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 303 (764)
.....-...+...|+++.|+++-++... ..|+.+ .+|..|..+|
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF------------------------------~tW~~La~vY 381 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSF------------------------------ESWYNLARCH 381 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCH------------------------------HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhh------------------------------HHHHHHHHHH
Confidence 1122223345678999999999999887 677763 6999999999
Q ss_pred HccCCHHHHHHHHHHHH
Q 004269 304 GRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 304 ~~~~~~~~a~~~~~~m~ 320 (764)
...|+++.|+-.++.+.
T Consensus 382 i~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 382 IKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHTTCHHHHHHHHHHSC
T ss_pred HHhccHHHHHHHHhcCC
Confidence 99999999999888864
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.75 E-value=40 Score=37.89 Aligned_cols=27 Identities=11% Similarity=0.332 Sum_probs=22.3
Q ss_pred cHHHHHHHhhCCCChhHHHHHHHHHHH
Q 004269 89 DFFHILNYCARSPDPLFVMETWRMMEE 115 (764)
Q Consensus 89 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 115 (764)
.|..++++..+.++.+.+.++|..+..
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 577788888888899999999988874
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.82 E-value=3.8 Score=31.22 Aligned_cols=61 Identities=5% Similarity=-0.110 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHH
Q 004269 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKF 233 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 233 (764)
+.-+..+-++.+-...+.|++....+.+++|.+.+|+..|.++++.+.....+...+|..+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 3444555555555556666666666666666666666666666666654433333344443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.07 E-value=3.4 Score=35.16 Aligned_cols=74 Identities=11% Similarity=-0.018 Sum_probs=47.4
Q ss_pred cccCCchhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccC-CCCCh-------hcHHHHHHHhhCCCChhHHHHHHHHH
Q 004269 42 TTMGLNEESISKATQMQIVDALCRGERSRASHLLLNLGHAH-HSLGA-------DDFFHILNYCARSPDPLFVMETWRMM 113 (764)
Q Consensus 42 ~~~~~~p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m 113 (764)
+.-|..|.-..-.+...+..+...+.++.|+-+.+.+.... ..++. .++..+..++...+++..|...|++.
T Consensus 10 ~~~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 10 HSSGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp -----------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34566777666677778999999999999999888765432 12331 24566777888889999999999987
Q ss_pred HH
Q 004269 114 EE 115 (764)
Q Consensus 114 ~~ 115 (764)
++
T Consensus 90 Lq 91 (167)
T 3ffl_A 90 LQ 91 (167)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.70 E-value=7.7 Score=31.41 Aligned_cols=59 Identities=8% Similarity=0.099 Sum_probs=41.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 598 ALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVFS 657 (764)
Q Consensus 598 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 657 (764)
..+-++.+....+-|++.+..+.+++|.+.+|+..|.++++-.+.+ +.+...+|..++.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 4445555666677788888888888888888888888888877663 4444556666554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=82.96 E-value=4.2 Score=41.07 Aligned_cols=67 Identities=9% Similarity=-0.091 Sum_probs=43.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhh-----cCCCCChhh
Q 004269 127 LMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS-----RMVGKNEVT 195 (764)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t 195 (764)
.++..+...|++++|...+..+...+ +-+...|..++.+|.+.|+..+|++.|+...+ .|+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555566777777777777665443 33556777777777777777777777766544 266666554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=82.93 E-value=4.5 Score=40.83 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 004269 583 TALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQ-----NKVQPDPST 651 (764)
Q Consensus 583 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 651 (764)
..++..+...|+.++|...+..+.... +-+...|..++.++.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345666677777777777777766432 34666777777777777777777777776643 377777665
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.20 E-value=12 Score=30.23 Aligned_cols=61 Identities=5% Similarity=-0.096 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHH
Q 004269 174 MVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFV 234 (764)
Q Consensus 174 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 234 (764)
.-+..+-++.+-...+.|++......|++|.+.+|+..|.++++.+.....+...+|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 3344555555666667777777777777777777777777777766654444444454443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 764 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.84 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.45 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.39 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.93 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.9 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.89 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.84 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.81 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.81 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.71 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.66 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.65 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.56 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.25 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.2 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.13 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.12 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.12 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.05 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.0 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.97 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.97 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.9 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.88 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.85 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.82 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.78 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.75 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.69 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.58 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.58 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.49 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.35 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.24 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.23 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.2 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.17 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.17 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.17 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.11 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.08 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.97 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.87 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.85 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.78 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.74 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.63 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.58 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.56 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.83 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 95.82 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 95.81 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.4 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.12 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.94 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.42 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.61 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.1 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.59 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.7 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 84.11 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 82.59 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=3e-17 Score=169.15 Aligned_cols=152 Identities=10% Similarity=0.051 Sum_probs=108.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004269 508 GTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIK 587 (764)
Q Consensus 508 ~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 587 (764)
+...+..+...+.+.|++++|+..|++..+.. +-+..++..+...+...|++++|...++...... +.+...+..+..
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHH
Confidence 34455556666777777788888887777653 2245667777777888888888888887777653 456677777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 004269 588 ILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPD-PSTCHFVFSGYVNCGF 664 (764)
Q Consensus 588 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~ 664 (764)
.+.+.|++++|++.+++..+.. +-+..++..+...|.+.|++++|++.|++.++ +.|+ ...|..+..+|.+.||
T Consensus 314 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 314 IKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 8888888888888888877432 23566778888888888888888888888874 5565 4466666667776664
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=3.4e-17 Score=168.69 Aligned_cols=289 Identities=9% Similarity=-0.032 Sum_probs=157.9
Q ss_pred HHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHH
Q 004269 60 VDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLE 139 (764)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 139 (764)
..+.+.|++++|++.|+++.+.. |-++..+..+..++.+.|+++.|...+++..+.+ +.+..+|..+...|.+.|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence 34556777777777777776654 3345566666677777777777777777777654 335566777777777777777
Q ss_pred HHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHH
Q 004269 140 EASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDY 219 (764)
Q Consensus 140 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 219 (764)
+|...+....+.. +.+...+..........+....+............ ................+....+...+...
T Consensus 85 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 85 EAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHh
Confidence 7777777665432 22233333334444444444444444444433322 23333333444444555555555555555
Q ss_pred HhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHH
Q 004269 220 IKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDV 299 (764)
Q Consensus 220 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 299 (764)
....+.+...+..+...+...|+.+.|...++...+ ..|+. ..+|..+
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~------------------------------~~~~~~l 209 (388)
T d1w3ba_ 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT--LDPNF------------------------------LDAYINL 209 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTC------------------------------HHHHHHH
T ss_pred hccCcchhHHHHhhcccccccCcHHHHHHHHHHHHH--hCccc------------------------------HHHHHHH
Confidence 555555556666666666666666666666666555 33332 1355556
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004269 300 IHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALEL 379 (764)
Q Consensus 300 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 379 (764)
...+...|++++|+..+++....+ ..+...+..+...+.+.|++++|...|+...+.... +..++..+...+...|++
T Consensus 210 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~ 287 (388)
T d1w3ba_ 210 GNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCH
T ss_pred hhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 666666666666666666655432 123334444445555555555555555555544322 233333334444444444
Q ss_pred HHHHHHHH
Q 004269 380 DLAEALLD 387 (764)
Q Consensus 380 ~~a~~~~~ 387 (764)
++|...++
T Consensus 288 ~~A~~~~~ 295 (388)
T d1w3ba_ 288 AEAEDCYN 295 (388)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44443333
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.4e-11 Score=122.58 Aligned_cols=232 Identities=9% Similarity=-0.012 Sum_probs=188.2
Q ss_pred HHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHcc
Q 004269 56 QMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKG 135 (764)
Q Consensus 56 ~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 135 (764)
......+.+.|++++|+..|+++.+.. |-+...|..+..++...|+++.|...+.+..+.. +-+...+..+...|...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 345667899999999999999999876 4567788899999999999999999999999875 44678888999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCCCChh-------------hhHHHHHHHhccCCHHHHHHHHHHHhhcCC-CCChhhHHHHHH
Q 004269 136 GYLEEASNLIYFLGERYGIYPILP-------------VYNSFLGACAKLHSMVHANLCLDLMDSRMV-GKNEVTYTELLK 201 (764)
Q Consensus 136 g~~~~A~~~~~~m~~~~~~~~~~~-------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~ 201 (764)
|++++|.+.++......+-..... .....+..+...+.+.+|.+.|.......+ .++...+..+..
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 999999999998864321111111 111222334455677888888888776533 235667888888
Q ss_pred HHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCc
Q 004269 202 LAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPI 281 (764)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (764)
.+...|++++|...++...+..+.+..+|..+..+|...|++++|.+.|++..+ ..|+.
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~------------------- 239 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGY------------------- 239 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC-------------------
T ss_pred HHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHH--Hhhcc-------------------
Confidence 899999999999999999988888899999999999999999999999999988 55654
Q ss_pred cCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 282 PLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 282 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
..+|..+..+|.+.|++++|+..|++..+
T Consensus 240 -----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 240 -----------IRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp -----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 25888999999999999999999999876
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=1.2e-10 Score=115.65 Aligned_cols=226 Identities=8% Similarity=-0.087 Sum_probs=142.3
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhcc
Q 004269 92 HILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKL 171 (764)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 171 (764)
.....+.+.|+++.|...|+++++.. +.+...|..+..+|...|++++|...|++..+.. +-+...|..+...|...
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--ccccccccccccccccc
Confidence 45556778899999999999999875 4568899999999999999999999999987643 33566888899999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCChhhH----------------HHHHHHHHhhcChhHHHHHHHHHHhc--CCCCHhhHHHH
Q 004269 172 HSMVHANLCLDLMDSRMVGKNEVTY----------------TELLKLAVWQKNLSAVHEIWEDYIKH--YSLSIFSLRKF 233 (764)
Q Consensus 172 g~~~~A~~~~~~m~~~g~~p~~~t~----------------~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l 233 (764)
|++++|.+.++...... |+.... ...+..+...+...++...+....+. ...+..++..+
T Consensus 101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l 178 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 178 (323)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred ccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 99999999999987743 322111 01111222334444555555544432 22334455555
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHH
Q 004269 234 VWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAE 313 (764)
Q Consensus 234 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 313 (764)
...+...|++++|...|++..+ ..|+. ...|..+...+...|++++|+
T Consensus 179 ~~~~~~~~~~~~A~~~~~~al~--~~p~~------------------------------~~~~~~lg~~~~~~g~~~~A~ 226 (323)
T d1fcha_ 179 GVLFNLSGEYDKAVDCFTAALS--VRPND------------------------------YLLWNKLGATLANGNQSEEAV 226 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCTTC------------------------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhhcccccccc--ccccc------------------------------ccchhhhhhcccccccchhHH
Confidence 5555555666666666555554 23332 135555555555566666666
Q ss_pred HHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 314 QLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 314 ~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
+.|++..+. .|+ ..++..+..+|.+.|++++|...|++.++
T Consensus 227 ~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 227 AAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 655555543 222 33444555555555555555555555544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.93 E-value=4.9e-08 Score=95.23 Aligned_cols=222 Identities=8% Similarity=-0.033 Sum_probs=164.3
Q ss_pred chHHHHHHhccccCCCCChhcHHHHHHHhhC--------------CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004269 69 SRASHLLLNLGHAHHSLGADDFFHILNYCAR--------------SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 69 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--------------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 134 (764)
+.+..+|+.+...- +.++..+..-++.+-. .+..+.|..+|++..+...+.+...|...+..+..
T Consensus 33 ~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 34555666665542 3444444443333221 12356788999998876556677788888999999
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHH-HHHhhcChhHHH
Q 004269 135 GGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLK-LAVWQKNLSAVH 213 (764)
Q Consensus 135 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~ 213 (764)
.|+++.|..+|+++.+.. .......|...+..+.+.|+++.|.++|+.+...++. +...|..... -+...|+.+.|.
T Consensus 112 ~~~~~~a~~i~~~~l~~~-~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHH
Confidence 999999999999987532 1112347899999999999999999999999886543 3333333332 234468999999
Q ss_pred HHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhh-ccCcchhcccccccccccccCCCccCCccccchhh
Q 004269 214 EIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALA-MMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVL 292 (764)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (764)
.+|+.+.+..+.+...|...+..+...|+++.|..+|++..+.. ..|...
T Consensus 190 ~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~----------------------------- 240 (308)
T d2onda1 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS----------------------------- 240 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC-----------------------------
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH-----------------------------
Confidence 99999999899999999999999999999999999999988743 222210
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 293 RWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 293 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
...|...+.--...|+.+.+.++++++.+.
T Consensus 241 ~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 241 GEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 147888888888889999999999988763
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=6.7e-08 Score=94.23 Aligned_cols=198 Identities=8% Similarity=-0.104 Sum_probs=159.3
Q ss_pred hhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCC-ChhHHHHHHHHHHHcCccccHHHHHHHHH
Q 004269 52 SKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSP-DPLFVMETWRMMEEKEIGLNNKCYLLMMQ 130 (764)
Q Consensus 52 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 130 (764)
...+..+...+.+.+.+++|+.+++++++.+ |-+...|+....++...+ ++++|++.++...+.. +-+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 3344444455777899999999999999987 455667788777777765 6899999999998875 557889999999
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcC--
Q 004269 131 ALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN-- 208 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-- 208 (764)
.+.+.|++++|+..++.+.+.+ +.+...|+.+...+.+.|++++|+..++.+.+..+. +...|+.+...+...+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHhhccHHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccc
Confidence 9999999999999999998654 446779999999999999999999999999986543 66677776665555444
Q ss_pred ----hhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 209 ----LSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 209 ----~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
+++|.+.+...++..|.+...|+.+...+...| .+++.+.++...+
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 578888888888888889999998887776554 5778888888876
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.4e-07 Score=91.95 Aligned_cols=198 Identities=11% Similarity=-0.044 Sum_probs=147.9
Q ss_pred hcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC-CHHHHHHHHHHHhhhcCCCCChhhhHHHHH
Q 004269 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG-YLEEASNLIYFLGERYGIYPILPVYNSFLG 166 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 166 (764)
..|+.+...+.+.+.+++|+++++++++.+ |-+...|+....++...| ++++|+..++...+.+ +-+..+|+.+..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~a~~~~~~ 120 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--HhhhhHHHHHhH
Confidence 345666667777888899999999999875 556678888888877766 5899999998886653 345668888888
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCC----
Q 004269 167 ACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD---- 242 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---- 242 (764)
.+.+.|++++|+..++.+.+..+. +...|..+...+...|++++|.+.++.+++..+.+..+|+.+..++.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchh
Confidence 888899999999999988886433 677888888888888999999999998888888888888877766555443
Q ss_pred --HHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 004269 243 --LKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQ 320 (764)
Q Consensus 243 --~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 320 (764)
+++|+..+....+ ..|+. ...|+.+...+. ....+++.+.++...
T Consensus 200 ~~~~~ai~~~~~al~--~~P~~------------------------------~~~~~~l~~ll~-~~~~~~~~~~~~~~~ 246 (315)
T d2h6fa1 200 AVLEREVQYTLEMIK--LVPHN------------------------------ESAWNYLKGILQ-DRGLSKYPNLLNQLL 246 (315)
T ss_dssp HHHHHHHHHHHHHHH--HSTTC------------------------------HHHHHHHHHHHT-TTCGGGCHHHHHHHH
T ss_pred hhhHHhHHHHHHHHH--hCCCc------------------------------hHHHHHHHHHHH-hcChHHHHHHHHHHH
Confidence 5778888877776 45554 146666655544 344567777777776
Q ss_pred HC
Q 004269 321 SL 322 (764)
Q Consensus 321 ~~ 322 (764)
+.
T Consensus 247 ~l 248 (315)
T d2h6fa1 247 DL 248 (315)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=9.9e-07 Score=87.69 Aligned_cols=166 Identities=13% Similarity=0.012 Sum_probs=103.5
Q ss_pred HHHHhhcChhHHHHHHHHHHhc-----CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhccccccccccc
Q 004269 201 KLAVWQKNLSAVHEIWEDYIKH-----YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSS 275 (764)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (764)
..+...|+++.+...+...... ......++..+...+...++...+...+.............
T Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~------------ 208 (366)
T d1hz4a_ 141 QLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH------------ 208 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC------------
T ss_pred HHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc------------
Confidence 3444455555555555444431 11122334445556667777777777777665522211110
Q ss_pred ccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHhcCChhHHHHHHH
Q 004269 276 RLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS---HTYDGFIRAIVSDRGLRNGMEVLK 352 (764)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~ 352 (764)
.......+..+...+...|+++.|...+.+........+. ..+..+..++...|++++|...++
T Consensus 209 -------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 275 (366)
T d1hz4a_ 209 -------------SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLE 275 (366)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------CchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0001146677778888999999999999887654322222 234556778889999999999998
Q ss_pred HHHH----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 004269 353 IMQQ----NNLKPQD-STIATLSVECSKALELDLAEALLDQISR 391 (764)
Q Consensus 353 ~~~~----~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~ 391 (764)
.... .+..|+. ..+..+...|.+.|++++|.+.+++...
T Consensus 276 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 276 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8764 3443333 3566778889999999999999887643
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.81 E-value=7.1e-07 Score=86.71 Aligned_cols=218 Identities=11% Similarity=0.041 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHcCccccHHHHHHHHHHHH--------------ccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhc
Q 004269 105 FVMETWRMMEEKEIGLNNKCYLLMMQALC--------------KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAK 170 (764)
Q Consensus 105 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~--------------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 170 (764)
.+..+|++++..- +.++..|..-+..+- ..+..++|..+|++..+. ..+.+...|...+..+.+
T Consensus 34 Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~-~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHh
Confidence 4555666666542 334455544443322 123356777777776532 223344566777777777
Q ss_pred cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHH-hhccCCHHHHHHH
Q 004269 171 LHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS-FTRLRDLKSAYET 249 (764)
Q Consensus 171 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~ 249 (764)
.|+++.|..+|+.+...........|...+..+.+.++++.|.++|+.+.+..+.+...|...... +...|+.+.|.++
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i 191 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHH
Confidence 788888888888877653333344677777777777777777777777777655555555554443 2345677777777
Q ss_pred HHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCc
Q 004269 250 LQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG-LQPSS 328 (764)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~ 328 (764)
|+.+.+. .|+. ...|...+..+...|+++.|..+|++..... ..|+.
T Consensus 192 ~e~~l~~--~p~~------------------------------~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~ 239 (308)
T d2onda1 192 FELGLKK--YGDI------------------------------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp HHHHHHH--HTTC------------------------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred HHHHHHh--hhhh------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Confidence 7777663 3332 1366666777777777777777777766543 23321
Q ss_pred --ccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 004269 329 --HTYDGFIRAIVSDRGLRNGMEVLKIMQQ 356 (764)
Q Consensus 329 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 356 (764)
..|...+..-...|+.+.+..+++.+.+
T Consensus 240 ~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 240 SGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2344444444455666666666665544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.81 E-value=3.2e-07 Score=91.39 Aligned_cols=270 Identities=9% Similarity=-0.084 Sum_probs=191.5
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCC----hhcHHHHHHHhhCCCChhHHHHHHHHHHHcCc-----cccHHHHHHHH
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLG----ADDFFHILNYCARSPDPLFVMETWRMMEEKEI-----GLNNKCYLLMM 129 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~li 129 (764)
...+...|++++|+++|++........+ ...+..+..++...|+++.|...+++..+... ......+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4456789999999999999876542211 23466677888889999999999998876421 11234566777
Q ss_pred HHHHccCCHHHHHHHHHHHhhh---cCCCCC---hhhhHHHHHHHhccCCHHHHHHHHHHHhhcCC----CCChhhHHHH
Q 004269 130 QALCKGGYLEEASNLIYFLGER---YGIYPI---LPVYNSFLGACAKLHSMVHANLCLDLMDSRMV----GKNEVTYTEL 199 (764)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~m~~~---~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~l 199 (764)
..+...|++..|...+...... .+.... ...+..+...+...|+++.+...+........ .....++...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 8889999999999988876431 111111 12455677788899999999999988876422 2233455556
Q ss_pred HHHHHhhcChhHHHHHHHHHHhc---CCC----CHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccc
Q 004269 200 LKLAVWQKNLSAVHEIWEDYIKH---YSL----SIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRL 272 (764)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (764)
...+...++...+...+...... ... ....+..+...+...|+++.|...+....+.....+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------- 248 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH---------- 248 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG----------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch----------
Confidence 66777889999888888777642 111 2335666777888999999999998876552211111
Q ss_pred cccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH----CCCCCCc-ccHHHHHHHHHhcCChhHH
Q 004269 273 RSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS----LGLQPSS-HTYDGFIRAIVSDRGLRNG 347 (764)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~-~~~~~ll~~~~~~~~~~~a 347 (764)
.....+..+...+...|++++|...+++... .+..|+. .++..+-..+...|++++|
T Consensus 249 ------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 310 (366)
T d1hz4a_ 249 ------------------FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 310 (366)
T ss_dssp ------------------GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 1124677788999999999999999998763 3444443 4567777889999999999
Q ss_pred HHHHHHHHH
Q 004269 348 MEVLKIMQQ 356 (764)
Q Consensus 348 ~~~~~~~~~ 356 (764)
.+.+++..+
T Consensus 311 ~~~l~~Al~ 319 (366)
T d1hz4a_ 311 QRVLLDALK 319 (366)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=2.8e-07 Score=87.20 Aligned_cols=202 Identities=7% Similarity=-0.186 Sum_probs=125.3
Q ss_pred hcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHH
Q 004269 88 DDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGA 167 (764)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 167 (764)
..|..+..++.+.|+++.|.+.|++.++.. +-++.+|..+..+|.+.|++++|+..|++..+.. +.+..++..+..+
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH--hhhhhhHHHHHHH
Confidence 356667778888899999999999988875 4577788889999999999999999999887643 2345577888888
Q ss_pred HhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccC----CH
Q 004269 168 CAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLR----DL 243 (764)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~ 243 (764)
|...|++++|...|+...+..+. +......+...+...+..+....+...... ..++...++. +..+.... ..
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGWNI-VEFYLGNISEQTLM 191 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHHHH-HHHHTTSSCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhc-cchhhhhhhH-HHHHHHHHHHHHHH
Confidence 88899999999999888775422 333333333333444444444333333333 2222222222 22222221 12
Q ss_pred HHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 004269 244 KSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLG 323 (764)
Q Consensus 244 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 323 (764)
+.+...+..... ..|.. ..+|..+...+...|++++|...|++....
T Consensus 192 ~~~~~~~~~~~~--~~~~~------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 238 (259)
T d1xnfa_ 192 ERLKADATDNTS--LAEHL------------------------------SETNFYLGKYYLSLGDLDSATALFKLAVAN- 238 (259)
T ss_dssp HHHHHHCCSHHH--HHHHH------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhhh--cCccc------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-
Confidence 222222221111 11111 146777888888888999999888888764
Q ss_pred CCCCcc
Q 004269 324 LQPSSH 329 (764)
Q Consensus 324 ~~p~~~ 329 (764)
.|+..
T Consensus 239 -~p~~~ 243 (259)
T d1xnfa_ 239 -NVHNF 243 (259)
T ss_dssp -CCTTC
T ss_pred -CCCCH
Confidence 45543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.66 E-value=1.5e-07 Score=89.12 Aligned_cols=206 Identities=13% Similarity=-0.068 Sum_probs=141.5
Q ss_pred hhhhhhhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHH
Q 004269 48 EESISKATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLL 127 (764)
Q Consensus 48 p~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 127 (764)
++.....+..+...|.+.|++++|+..|++..... |-++.+|..+..++...|+++.|++.|++..+.. +.+..++..
T Consensus 33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~ 110 (259)
T d1xnfa_ 33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLN 110 (259)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHH
Confidence 44345556666788999999999999999999876 5677889999999999999999999999999975 446678888
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhc
Q 004269 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (764)
+...|...|++++|...|+...+.. +.+......+..++.+.+....+..+....... .++...+. ++..+....
T Consensus 111 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~ 185 (259)
T d1xnfa_ 111 RGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWN-IVEFYLGNI 185 (259)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHH-HHHHHTTSS
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--chhhhhhh-HHHHHHHHH
Confidence 9999999999999999999987653 233334444444555556655565555555553 22222222 222222211
Q ss_pred ----ChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 208 ----NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 208 ----~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
..+.+...+.......+....++..+...|...|+++.|.+.|+.... ..|+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 242 (259)
T d1xnfa_ 186 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN 242 (259)
T ss_dssp CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred HHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCC
Confidence 122222222211111223345777889999999999999999999987 55654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.65 E-value=5.9e-08 Score=96.04 Aligned_cols=87 Identities=8% Similarity=-0.124 Sum_probs=46.6
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004269 304 GRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAE 383 (764)
Q Consensus 304 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 383 (764)
...+..+++...+....... .++...+..+...+...++..+|...+.+..+.++. +...+..+...|.+.|+.++|.
T Consensus 219 ~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~ 296 (334)
T d1dcea1 219 FFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETL 296 (334)
T ss_dssp HHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHH
T ss_pred HHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHH
Confidence 33444555555555555442 223444445555555566666666666665554322 3344455555666666666666
Q ss_pred HHHHHHhhC
Q 004269 384 ALLDQISRC 392 (764)
Q Consensus 384 ~~~~~~~~~ 392 (764)
+.|+.....
T Consensus 297 ~~~~~ai~l 305 (334)
T d1dcea1 297 QYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.56 E-value=2.6e-07 Score=91.28 Aligned_cols=221 Identities=5% Similarity=-0.123 Sum_probs=142.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhc--ChhHHHHHHHHHHhcCCCCHhhHHHH-HHHhhccCCHHHHHH
Q 004269 172 HSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK--NLSAVHEIWEDYIKHYSLSIFSLRKF-VWSFTRLRDLKSAYE 248 (764)
Q Consensus 172 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~ 248 (764)
|++++|+..++...+..++ +...|..+..++...+ +++++...+..+.+..+++...+... ...+...+..+.|..
T Consensus 87 ~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 87 ALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHH
Confidence 3455666666666554322 4444444444444433 35666666666666656666555433 345566777777777
Q ss_pred HHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCc
Q 004269 249 TLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSS 328 (764)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 328 (764)
.++.+.+ ..|+. ..+|+.+...+.+.|++++|...+...... .|+
T Consensus 166 ~~~~~i~--~~p~~------------------------------~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~- 210 (334)
T d1dcea1 166 FTDSLIT--RNFSN------------------------------YSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK- 210 (334)
T ss_dssp HHHTTTT--TTCCC------------------------------HHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH-
T ss_pred HHHHHHH--cCCCC------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH-
Confidence 7777766 33433 147777777777777776665544433321 111
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHH
Q 004269 329 HTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECSKALELDLAEALLDQISRCT--NPKPFSAFLAACD 406 (764)
Q Consensus 329 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~ 406 (764)
...+...+...+..+.+...+......... +...+..+...+...|+.++|...+.+..... +..+|..+...|.
T Consensus 211 --~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 287 (334)
T d1dcea1 211 --ELELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALD 287 (334)
T ss_dssp --HHHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 112333455667777888888887776543 44555666777888899999999999888764 4566778888999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCHHHH
Q 004269 407 TMDKPERAIKIFAKMRQKLRPDIRTY 432 (764)
Q Consensus 407 ~~~~~~~a~~l~~~m~~~~~p~~~t~ 432 (764)
..|++++|+..|++..+ +.|+...|
T Consensus 288 ~~~~~~eA~~~~~~ai~-ldP~~~~y 312 (334)
T d1dcea1 288 PLLYEKETLQYFSTLKA-VDPMRAAY 312 (334)
T ss_dssp TGGGHHHHHHHHHHHHH-HCGGGHHH
T ss_pred HCCCHHHHHHHHHHHHH-HCcccHHH
Confidence 99999999999999887 55654444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.25 E-value=2e-05 Score=75.32 Aligned_cols=138 Identities=10% Similarity=-0.061 Sum_probs=81.5
Q ss_pred hHHHHHHHHHhhcChhHHHHHHHHHHhc---C---CCCHhhHHHHHHHhh-ccCCHHHHHHHHHHHHHhhccCcchhccc
Q 004269 195 TYTELLKLAVWQKNLSAVHEIWEDYIKH---Y---SLSIFSLRKFVWSFT-RLRDLKSAYETLQHMVALAMMGKLYINRT 267 (764)
Q Consensus 195 t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~---~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 267 (764)
+|..+..+|.+.|++++|.+.++...+. . .....++..+...|. ..|+++.|...+++..+.....+.+
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~---- 154 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV---- 154 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCch----
Confidence 3444444555555555555555544431 1 111234445555553 4689999999988876521111110
Q ss_pred ccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcc------cHHHHHHHHHhc
Q 004269 268 SEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSH------TYDGFIRAIVSD 341 (764)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------~~~~ll~~~~~~ 341 (764)
.....+|..+...+...|++++|+..|++........... .+...+..+...
T Consensus 155 ----------------------~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 212 (290)
T d1qqea_ 155 ----------------------ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAA 212 (290)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHT
T ss_pred ----------------------hhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHh
Confidence 0002478888999999999999999999988753221111 123344455677
Q ss_pred CChhHHHHHHHHHHHCC
Q 004269 342 RGLRNGMEVLKIMQQNN 358 (764)
Q Consensus 342 ~~~~~a~~~~~~~~~~~ 358 (764)
+++..|...++...+..
T Consensus 213 ~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 213 TDAVAAARTLQEGQSED 229 (290)
T ss_dssp TCHHHHHHHHHGGGCC-
T ss_pred ccHHHHHHHHHHHHHhC
Confidence 88888888888877654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=3.3e-05 Score=68.26 Aligned_cols=133 Identities=11% Similarity=-0.109 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQAL 132 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 132 (764)
..|+. ...+...|+++.|++.|+.+. ++++..+..+..++...|+++.|.+.|++.++.+ +.+...|..+..+|
T Consensus 7 ~l~~~-g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~ 80 (192)
T d1hh8a_ 7 SLWNE-GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 80 (192)
T ss_dssp HHHHH-HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHH
Confidence 34443 555788999999999999863 3667788889999999999999999999999986 56788999999999
Q ss_pred HccCCHHHHHHHHHHHhhhcC-----------CC--CC-hhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCC
Q 004269 133 CKGGYLEEASNLIYFLGERYG-----------IY--PI-LPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGK 191 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~m~~~~~-----------~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 191 (764)
.+.|++++|.+.|++...... .. ++ ..++..+..++.+.|++++|.+.|+...+..+.+
T Consensus 81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999999999999998753211 00 00 1245567778888999999999998887765544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=3.9e-05 Score=67.74 Aligned_cols=141 Identities=10% Similarity=0.035 Sum_probs=91.7
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHH
Q 004269 166 GACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKS 245 (764)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 245 (764)
..+...|+++.|++.|..+ ..|+..+|..+-.++...|++++|.+.|++.++-.+.+...|..+..+|.+.|++++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence 3445567777777777653 235566666777777777777777777777777777778888888888888888888
Q ss_pred HHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 004269 246 AYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQ 325 (764)
Q Consensus 246 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 325 (764)
|.+.|++..+.. .++..+.....|.. ..... ..++..+..++.+.|++++|.+.|....+....
T Consensus 89 A~~~~~kAl~~~-~~n~~~~~~~~~~~-------------~~~~~--~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 89 AIKDLKEALIQL-RGNQLIDYKILGLQ-------------FKLFA--CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHTT-TTCSEEECGGGTBC-------------CEEEH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhC-ccCchHHHHHhhhh-------------cccch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 888888876521 11110000000000 00000 135667778899999999999999998876444
Q ss_pred C
Q 004269 326 P 326 (764)
Q Consensus 326 p 326 (764)
|
T Consensus 153 ~ 153 (192)
T d1hh8a_ 153 P 153 (192)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.12 E-value=3.4e-05 Score=73.58 Aligned_cols=203 Identities=7% Similarity=-0.048 Sum_probs=139.8
Q ss_pred hhHHHHHHHHHhhCCcchHHHHHHhcccc----CCC-CChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCc-----cccH
Q 004269 53 KATQMQIVDALCRGERSRASHLLLNLGHA----HHS-LGADDFFHILNYCARSPDPLFVMETWRMMEEKEI-----GLNN 122 (764)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~ 122 (764)
..|......|...+++++|++.|.+.... +.+ ....+|..+..+|.+.|+++.|.+.+++..+... ....
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 117 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence 44666677788899999999999987653 111 1235688899999999999999999998765321 1123
Q ss_pred HHHHHHHHHHH-ccCCHHHHHHHHHHHhhh---cCCCC-ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChh---
Q 004269 123 KCYLLMMQALC-KGGYLEEASNLIYFLGER---YGIYP-ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEV--- 194 (764)
Q Consensus 123 ~~~~~li~~~~-~~g~~~~A~~~~~~m~~~---~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--- 194 (764)
.++..+...|- ..|++++|++.+++..+- .+.++ -..++..+...+...|++++|+..|+............
T Consensus 118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 197 (290)
T d1qqea_ 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (290)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhh
Confidence 45666676774 469999999999877432 22111 12357888999999999999999999987753222111
Q ss_pred ---hHHHHHHHHHhhcChhHHHHHHHHHHhcCCC--C---HhhHHHHHHHhhc--cCCHHHHHHHHHHHHH
Q 004269 195 ---TYTELLKLAVWQKNLSAVHEIWEDYIKHYSL--S---IFSLRKFVWSFTR--LRDLKSAYETLQHMVA 255 (764)
Q Consensus 195 ---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~---~~~~~~li~~~~~--~g~~~~A~~~~~~~~~ 255 (764)
.+..++-.+...++++.|...++...+..+. + ......++.++-. .+.+++|+..|+.+.+
T Consensus 198 ~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 2234444567889999999999999875332 2 2345666666654 3457888888775543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.12 E-value=0.0018 Score=61.49 Aligned_cols=189 Identities=8% Similarity=0.012 Sum_probs=97.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004269 295 SFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIATLSVECS 374 (764)
Q Consensus 295 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 374 (764)
-|.-++..+.+.++++.|.+++.+.. +..+|..+..+|.+......+ .+...+...++.....++..|-
T Consensus 42 d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye 110 (336)
T d1b89a_ 42 NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQ 110 (336)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHH
Confidence 45556666666777776666655432 444666666666665544332 2223333345555566677777
Q ss_pred hcCCHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCCchhhchhh
Q 004269 375 KALELDLAEALLDQISRCT--NPKPFSAFLAACDTMDKPERAIKIFAKMRQKLRPDIRTYELLFSLFGNVNAPYEEGNMF 452 (764)
Q Consensus 375 ~~g~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~ 452 (764)
..|.+++...++....... +...++-++..|++.+ .++.++.++.. .-.-| ...++..|...+
T Consensus 111 ~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~--s~~y~---~~k~~~~c~~~~--------- 175 (336)
T d1b89a_ 111 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF--WSRVN---IPKVLRAAEQAH--------- 175 (336)
T ss_dssp HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH--STTSC---HHHHHHHHHTTT---------
T ss_pred HcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc--cccCC---HHHHHHHHHHcC---------
Confidence 7777777777777654322 4445666777676654 33333333222 11111 111222222211
Q ss_pred hhhhhHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHH
Q 004269 453 SQVDSAKRINAIEMDMARNNIQHSHISMKNLLKALGAEGMIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIF 532 (764)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~ 532 (764)
.|..++-.|.+.|.+++|..++-.. .++..-....+..+.+..+.+...++.
T Consensus 176 --------------------------l~~elv~Ly~~~~~~~~A~~~~i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i 227 (336)
T d1b89a_ 176 --------------------------LWAELVFLYDKYEEYDNAIITMMNH--PTDAWKEGQFKDIITKVANVELYYRAI 227 (336)
T ss_dssp --------------------------CHHHHHHHHHHTTCHHHHHHHHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHH
T ss_pred --------------------------ChHHHHHHHHhcCCHHHHHHHHHHc--chhhhhHHHHHHHHHccCChHHHHHHH
Confidence 1334556677777777776665332 233333444555666666665555554
Q ss_pred HHHHh
Q 004269 533 KQMKT 537 (764)
Q Consensus 533 ~~m~~ 537 (764)
....+
T Consensus 228 ~~yL~ 232 (336)
T d1b89a_ 228 QFYLE 232 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=2.1e-05 Score=67.27 Aligned_cols=95 Identities=11% Similarity=-0.124 Sum_probs=71.3
Q ss_pred HHHHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHc
Q 004269 55 TQMQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCK 134 (764)
Q Consensus 55 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 134 (764)
+......+.+.|++++|+..|++..+.+ +-+...|..+..++...|+++.|.+.|++.++.+ +.+...|..+..+|..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence 3344556778888888888888887766 4566677777778888888888888888887765 4466677788888888
Q ss_pred cCCHHHHHHHHHHHhhh
Q 004269 135 GGYLEEASNLIYFLGER 151 (764)
Q Consensus 135 ~g~~~~A~~~~~~m~~~ 151 (764)
.|++++|...+++....
T Consensus 91 ~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKV 107 (159)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc
Confidence 88888888888877654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=6.2e-05 Score=60.10 Aligned_cols=95 Identities=12% Similarity=-0.079 Sum_probs=41.9
Q ss_pred HHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChh
Q 004269 131 ALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLS 210 (764)
Q Consensus 131 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 210 (764)
.+.+.|++++|+..|++..+.+ +.+...|..+..+|.+.|++++|+..++...+..+. +...|..+..++...|+++
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHH
Confidence 3444444444444444444332 223334444444444444444444444444443221 3344444444444444444
Q ss_pred HHHHHHHHHHhcCCCCHh
Q 004269 211 AVHEIWEDYIKHYSLSIF 228 (764)
Q Consensus 211 ~a~~~~~~~~~~~~~~~~ 228 (764)
+|...++...+..|.+..
T Consensus 89 ~A~~~~~~a~~~~p~~~~ 106 (117)
T d1elwa_ 89 EAKRTYEEGLKHEANNPQ 106 (117)
T ss_dssp HHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHhCCCCHH
Confidence 444444444443333333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.97 E-value=0.0011 Score=63.19 Aligned_cols=277 Identities=9% Similarity=0.015 Sum_probs=141.4
Q ss_pred CChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHH
Q 004269 85 LGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSF 164 (764)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 164 (764)
|+...-..+...|.+.|.++.|..++..+. -|..++..|.+.+++..|.+++.+.. +..+|..+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~-------~~~~~k~~ 75 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEV 75 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC-------CHHHHHHH
Confidence 444445556666666677777766666432 34455666666677777666655431 34466666
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHH
Q 004269 165 LGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLK 244 (764)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 244 (764)
...+.+.....-| .+.......+......++..|-..|.++....+++........+...++.++..|++.+. +
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~ 149 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-Q 149 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-H
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-H
Confidence 6666665544332 222222334555555666777777777777777776655455566666777777776543 2
Q ss_pred HHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 004269 245 SAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGL 324 (764)
Q Consensus 245 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 324 (764)
++.+.+......-+.+-...+| .. ...|..++..|.+.|+++.|..+. .++
T Consensus 150 ---kl~e~l~~~s~~y~~~k~~~~c-------------------~~--~~l~~elv~Ly~~~~~~~~A~~~~---i~~-- 200 (336)
T d1b89a_ 150 ---KMREHLELFWSRVNIPKVLRAA-------------------EQ--AHLWAELVFLYDKYEEYDNAIITM---MNH-- 200 (336)
T ss_dssp ---HHHHHHHHHSTTSCHHHHHHHH-------------------HT--TTCHHHHHHHHHHTTCHHHHHHHH---HHS--
T ss_pred ---HHHHHHHhccccCCHHHHHHHH-------------------HH--cCChHHHHHHHHhcCCHHHHHHHH---HHc--
Confidence 2233332211111100000000 00 125666777777777777765443 222
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-------------HHHHHHhcCCHHHHHHHHHHHhh
Q 004269 325 QPSSHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDSTIAT-------------LSVECSKALELDLAEALLDQISR 391 (764)
Q Consensus 325 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------li~~~~~~g~~~~a~~~~~~~~~ 391 (764)
.++..-....+..+.+..+.+...++.....+. .| ...+. ++...-+.+++......++....
T Consensus 201 ~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~ 276 (336)
T d1b89a_ 201 PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN 276 (336)
T ss_dssp TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHT
T ss_pred chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 345555566667777777777766666665543 12 22233 44444555555555555655555
Q ss_pred CCCCccHHHHHHHHHhcCCHHHHHH
Q 004269 392 CTNPKPFSAFLAACDTMDKPERAIK 416 (764)
Q Consensus 392 ~~~~~~~~~li~~~~~~~~~~~a~~ 416 (764)
.++....+++...|...++++.-..
T Consensus 277 ~n~~~vn~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 277 HNNKSVNESLNNLFITEEDYQALRT 301 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cChHHHHHHHHHHHhCcchhHHHHH
Confidence 4445567777777887777655333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=5.7e-05 Score=60.32 Aligned_cols=87 Identities=14% Similarity=0.037 Sum_probs=47.5
Q ss_pred HHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCcc
Q 004269 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIP 282 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (764)
+...|++++|...|...++..|.+...|..+..+|.+.|++++|+..+....+ +.|+.
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~-------------------- 70 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDW-------------------- 70 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTC--------------------
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHH--hccch--------------------
Confidence 44455555555555555555555555555555555555555555555555555 33333
Q ss_pred CCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 283 LNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 283 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
...|..+..++...|++++|+..|++..+
T Consensus 71 ----------~~~~~~~g~~~~~~~~~~~A~~~~~~a~~ 99 (117)
T d1elwa_ 71 ----------GKGYSRKAAALEFLNRFEEAKRTYEEGLK 99 (117)
T ss_dssp ----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ----------hhHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 13555555555555555555555555554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=0.00016 Score=61.48 Aligned_cols=102 Identities=12% Similarity=-0.151 Sum_probs=56.6
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcC
Q 004269 129 MQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKN 208 (764)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 208 (764)
...|.+.|++++|+..|++..+.+ +.+...|..+..+|...|++++|...|+...+..+. +..+|..+..++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCC
Confidence 344556666666666666555433 234445555666666666666666666666554221 33455555666666666
Q ss_pred hhHHHHHHHHHHhcCCCCHhhHHHH
Q 004269 209 LSAVHEIWEDYIKHYSLSIFSLRKF 233 (764)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~l 233 (764)
+++|...+++..+..+.+...+..+
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l 118 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKY 118 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 6666666666665544444444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.88 E-value=4.7e-05 Score=67.99 Aligned_cols=98 Identities=10% Similarity=-0.092 Sum_probs=59.1
Q ss_pred ChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHH
Q 004269 157 ILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWS 236 (764)
Q Consensus 157 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 236 (764)
+...+......|.+.|++++|+..|+......+ .+...|..+..+|...|+++.|...++..++-.|.+..+|..+..+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 333444444555555555555555555554422 2444555555556666666666666666655555566667777777
Q ss_pred hhccCCHHHHHHHHHHHHH
Q 004269 237 FTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~~ 255 (764)
|...|++++|...|++..+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7777888888888877766
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.85 E-value=6.3e-05 Score=67.11 Aligned_cols=99 Identities=7% Similarity=-0.024 Sum_probs=89.7
Q ss_pred CChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccc
Q 004269 191 KNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEG 270 (764)
Q Consensus 191 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 270 (764)
|+...+......+...|++++|...|...++..|.++..|..+..+|.+.|+++.|+..|+...+ +.|+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~-------- 71 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQS-------- 71 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTC--------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCc--------
Confidence 66777777888899999999999999999999999999999999999999999999999999987 66665
Q ss_pred cccccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 004269 271 RLRSSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQS 321 (764)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 321 (764)
..+|..+..+|...|++++|+..|++..+
T Consensus 72 ----------------------~~a~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 72 ----------------------VKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 25889999999999999999999998875
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=8.3e-05 Score=59.58 Aligned_cols=103 Identities=13% Similarity=0.102 Sum_probs=71.8
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCC---HHHHHHHHHHHHHhhccCcchhccccccccc
Q 004269 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRD---LKSAYETLQHMVALAMMGKLYINRTSEGRLR 273 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (764)
..+++.+...+++++|++.|+...+..+.++.++..+..++.+.++ .++|+.+|+++.+....|+.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~----------- 71 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ----------- 71 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH-----------
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchH-----------
Confidence 3566677777888888888888887777788888888888776544 44577788777653222221
Q ss_pred ccccCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCcccH
Q 004269 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPSSHTY 331 (764)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 331 (764)
..+|..+..+|.+.|++++|++.|++..+. .|+..-.
T Consensus 72 -------------------~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~--~P~~~~A 108 (122)
T d1nzna_ 72 -------------------RDYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQNNQA 108 (122)
T ss_dssp -------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred -------------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--CcCCHHH
Confidence 136677788888888888888888888774 4655433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.78 E-value=4.3e-05 Score=60.50 Aligned_cols=88 Identities=5% Similarity=-0.119 Sum_probs=51.0
Q ss_pred HHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCH
Q 004269 59 IVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYL 138 (764)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 138 (764)
...+.+.|++++|+..|++..... |-++..|..+..++.+.|+++.|...+++..+.+ +.+...+..+...|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 444555666666666666665554 2345555555566666666666666666665553 33455555666666666666
Q ss_pred HHHHHHHHHH
Q 004269 139 EEASNLIYFL 148 (764)
Q Consensus 139 ~~A~~~~~~m 148 (764)
++|.+.|++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.75 E-value=0.00011 Score=58.05 Aligned_cols=89 Identities=12% Similarity=-0.021 Sum_probs=56.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCH
Q 004269 164 FLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDL 243 (764)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 243 (764)
+...+.+.|++++|+..|+......+. +..+|..+..++...+++++|...++..++..|.+..++..+..+|...|+.
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 344555566666666666666654322 4555666666666666666666666666666666666667777777777777
Q ss_pred HHHHHHHHHH
Q 004269 244 KSAYETLQHM 253 (764)
Q Consensus 244 ~~A~~~~~~~ 253 (764)
++|.+.|++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=0.00011 Score=58.89 Aligned_cols=25 Identities=8% Similarity=-0.158 Sum_probs=10.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhh
Q 004269 162 NSFLGACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 162 ~~li~~~~~~g~~~~A~~~~~~m~~ 186 (764)
..|..+|.+.|++++|++.|+...+
T Consensus 76 ~~Lg~~y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 76 FYLAVGNYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333444444444444444444433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.58 E-value=0.0051 Score=56.88 Aligned_cols=49 Identities=16% Similarity=0.004 Sum_probs=24.0
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 004269 558 RCFKSASALVSMMVRDGFYPQTMTYTALIKILLD----YGDFDEALNLLDLVSLEG 609 (764)
Q Consensus 558 g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 609 (764)
.+++.|..+|....+.| ++..+..|...|.+ ..+.++|.++|++....|
T Consensus 196 ~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 196 KNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 45556666666555554 23333444444443 224555555555554433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.0011 Score=56.61 Aligned_cols=83 Identities=10% Similarity=-0.007 Sum_probs=59.3
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhc
Q 004269 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 239 (764)
+|+.+..+|.+.|++++|+..++......+. +..++..+..++...|+++.|...|+...+..|.+..+...+-.+..+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4666777778888888888888887775432 666777777788888888888888888877666677766666555544
Q ss_pred cCCH
Q 004269 240 LRDL 243 (764)
Q Consensus 240 ~g~~ 243 (764)
.+..
T Consensus 143 ~~~~ 146 (170)
T d1p5qa1 143 IRRQ 146 (170)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.49 E-value=0.0095 Score=54.98 Aligned_cols=51 Identities=14% Similarity=-0.055 Sum_probs=28.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCC
Q 004269 306 TQNSGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVS----DRGLRNGMEVLKIMQQNNL 359 (764)
Q Consensus 306 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~ 359 (764)
..+++.|+..|.+..+.| ++..+..|-..+.. ..+.++|.+.|+...+.|.
T Consensus 195 ~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 195 TKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 456667777777666655 33344444444433 2356667666666666553
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=0.0026 Score=54.24 Aligned_cols=115 Identities=10% Similarity=-0.060 Sum_probs=82.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 004269 124 CYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLA 203 (764)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 203 (764)
.+......+.+.|++++|+..|++..+..+..+... ..-......+ -..+|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~---------------~~~~~~~~~~-------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS---------------NEEAQKAQAL-------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC---------------SHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc---------------hHHHhhhchh-------HHHHHHHHHHHH
Confidence 344455667778888888888877654322111100 0000111111 123566677789
Q ss_pred HhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
.+.|+++.|...++..++..|.++.++..+..+|...|+++.|...|+...+ +.|+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n 129 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNN 129 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSC
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCC
Confidence 9999999999999999998899999999999999999999999999999988 66654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.24 E-value=0.0029 Score=54.22 Aligned_cols=123 Identities=13% Similarity=-0.065 Sum_probs=86.6
Q ss_pred HHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccC
Q 004269 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGG 136 (764)
Q Consensus 57 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 136 (764)
.........|++++|.+.|+........+-. ........+...-..+... ....+..+...+.+.|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l----------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVL----------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTT----------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCccccc----------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCC
Confidence 3456678899999999999998765311100 0001111122222222221 3457778899999999
Q ss_pred CHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhh-----cCCCCChhh
Q 004269 137 YLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDS-----RMVGKNEVT 195 (764)
Q Consensus 137 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t 195 (764)
++++|+..++++.+.+ +-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|+..+
T Consensus 82 ~~~~Al~~~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 82 RASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp CHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CchHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 9999999999998765 34777999999999999999999999999754 488888655
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.23 E-value=0.0058 Score=51.83 Aligned_cols=95 Identities=11% Similarity=0.051 Sum_probs=62.3
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhc
Q 004269 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTR 239 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 239 (764)
+|+.+..+|.+.|++++|+..++......+ .+..+|..+..++...|+++.|...|..+.+..|.+..+...+-.+..+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 455566677777888888887777776542 3566777777777778888888888887777666666666666555544
Q ss_pred cCCHH-HHHHHHHHHHH
Q 004269 240 LRDLK-SAYETLQHMVA 255 (764)
Q Consensus 240 ~g~~~-~A~~~~~~~~~ 255 (764)
.+... ...++|..|.+
T Consensus 145 ~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 145 AKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHh
Confidence 44332 34455555443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.0013 Score=52.99 Aligned_cols=101 Identities=7% Similarity=-0.001 Sum_probs=74.5
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccc
Q 004269 197 TELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSR 276 (764)
Q Consensus 197 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (764)
-.+-..+...|++++|...|...++..|.+..++..+..+|.+.|+++.|+..++++.+ +.|+....
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~~----------- 74 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENRED----------- 74 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTC-----------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH--hCcccHHH-----------
Confidence 34555677788888888888888887788888888999999999999999999999887 33332100
Q ss_pred cCCCccCCccccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 004269 277 LDIPIPLNALPVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSL 322 (764)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 322 (764)
......+|..+...+...+++++|+..|++....
T Consensus 75 ------------~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 75 ------------YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 0001246777777888888899999988887653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.17 E-value=0.0021 Score=51.71 Aligned_cols=94 Identities=11% Similarity=-0.079 Sum_probs=49.0
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCC-----hhhhHHHHH
Q 004269 92 HILNYCARSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPI-----LPVYNSFLG 166 (764)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~~li~ 166 (764)
.+...+.+.|+++.|++.|.+.++.+ +.+...+..+..+|.+.|++++|+..++++.+.+.-.+. ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666553 334555666666666666666666666655432111111 013444444
Q ss_pred HHhccCCHHHHHHHHHHHhh
Q 004269 167 ACAKLHSMVHANLCLDLMDS 186 (764)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~ 186 (764)
.+...+++++|++.|+....
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 55555566666666655444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.17 E-value=0.0074 Score=50.15 Aligned_cols=119 Identities=8% Similarity=-0.048 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004269 511 TYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILL 590 (764)
Q Consensus 511 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 590 (764)
.+......+.+.|++.+|+..|.+....- |... ...-......... ....+|+.+..+|.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~~~~~~~~~~~-------~~~~~~~Nla~~~~ 78 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWDDQILLDKKKN-------IEISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCCCHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhhhHHHHHhhhh-------HHHHHHhhHHHHHH
Confidence 45555667777788888888877766531 1000 0000000000000 11235666777888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004269 591 DYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTC 652 (764)
Q Consensus 591 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 652 (764)
+.|++++|++.+++.++.. +.+..+|..+..++...|++++|+..|++.++ +.|+....
T Consensus 79 ~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~ 137 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDI 137 (153)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHH
T ss_pred Hhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHH
Confidence 8888888888888877643 44677888888888888888888888888875 45655443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.17 E-value=0.0033 Score=52.38 Aligned_cols=73 Identities=8% Similarity=-0.139 Sum_probs=43.1
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHH
Q 004269 160 VYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKF 233 (764)
Q Consensus 160 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 233 (764)
+|+.+..+|.+.|++++|++.++......+ .+..+|..+..++...|+++.|...|+...+..|.+..+...+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l 141 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY 141 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 455556666666666666666666655432 2455666666666666666666666666666555555544443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.11 E-value=0.0014 Score=54.17 Aligned_cols=116 Identities=14% Similarity=0.042 Sum_probs=78.3
Q ss_pred HhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhcc----------CCHHHHHHHHHHHHHhhccCcchhccccccccc
Q 004269 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRL----------RDLKSAYETLQHMVALAMMGKLYINRTSEGRLR 273 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (764)
-+.+.+++|...++...+..|.++.++..+..++... +.+++|+..|++..+ +.|+.
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~----------- 74 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKK----------- 74 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTC-----------
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchh-----------
Confidence 3455567777777777777777777777777666533 456789999999988 66765
Q ss_pred ccccCCCccCCccccchhhhhhHHHHHHHHHccCC-----------HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHhcC
Q 004269 274 SSRLDIPIPLNALPVMKVLRWSFSDVIHACGRTQN-----------SGLAEQLMLQMQSLGLQPSSHTYDGFIRAIVSDR 342 (764)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 342 (764)
..+|..+..+|...|+ +++|.+.|++..+. .|+...|...+..+
T Consensus 75 -------------------~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~---- 129 (145)
T d1zu2a1 75 -------------------DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT---- 129 (145)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH----
T ss_pred -------------------hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH----
Confidence 2578888887766543 56777777777763 57766665554433
Q ss_pred ChhHHHHHHHHHHHCCC
Q 004269 343 GLRNGMEVLKIMQQNNL 359 (764)
Q Consensus 343 ~~~~a~~~~~~~~~~~~ 359 (764)
..+.+++.+..+.|+
T Consensus 130 --~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 130 --AKAPQLHAEAYKQGL 144 (145)
T ss_dssp --HTHHHHHHHHHHSSS
T ss_pred --HHHHHHHHHHHHHhc
Confidence 456666766666553
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=0.00046 Score=71.04 Aligned_cols=132 Identities=8% Similarity=-0.017 Sum_probs=63.2
Q ss_pred cChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcchhcccccccccccccCCCccCCcc
Q 004269 207 KNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKLYINRTSEGRLRSSRLDIPIPLNAL 286 (764)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (764)
+.++.+...+....+..+++...+..+...+.+.|+.+.|...+....+ ..+.
T Consensus 100 ~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~~------------------------- 152 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YICQ------------------------- 152 (497)
T ss_dssp HHHHHHHHHHTC-------------------------------CCHHHH--HHHH-------------------------
T ss_pred HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC--CCHH-------------------------
Confidence 3344444433333333445556666777777777777777766665544 1111
Q ss_pred ccchhhhhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 004269 287 PVMKVLRWSFSDVIHACGRTQNSGLAEQLMLQMQSLGLQPS-SHTYDGFIRAIVSDRGLRNGMEVLKIMQQNNLKPQDST 365 (764)
Q Consensus 287 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 365 (764)
.++..+...+...+++++|...|.+..+. .|+ ..+|+.+...+...|+..+|...|.+...... |-...
T Consensus 153 -------~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~~~~a 222 (497)
T d1ya0a1 153 -------HCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAA 222 (497)
T ss_dssp -------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHH
T ss_pred -------HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCHHH
Confidence 36666777777778888888888877764 344 35777777777778888888877777776543 35556
Q ss_pred HHHHHHHHHh
Q 004269 366 IATLSVECSK 375 (764)
Q Consensus 366 ~~~li~~~~~ 375 (764)
+..|...+.+
T Consensus 223 ~~nL~~~~~~ 232 (497)
T d1ya0a1 223 STNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.97 E-value=0.0038 Score=53.12 Aligned_cols=79 Identities=5% Similarity=-0.279 Sum_probs=53.0
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhh
Q 004269 159 PVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFT 238 (764)
Q Consensus 159 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (764)
..|..+..++.+.|++++|+..++...+..+ .+..+|..+..++...|+++.|.+.|+...+-.+.+..+...+..+..
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3556666677777777777777777776533 255667777777777777777777777777766666666555554443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.87 E-value=0.011 Score=50.57 Aligned_cols=120 Identities=10% Similarity=-0.030 Sum_probs=79.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhc
Q 004269 128 MMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQK 207 (764)
Q Consensus 128 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (764)
........|++++|...|.+...-. +.... ......+.+...-..+... ....+..+...+...|
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~---rG~~l--------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREW---RGPVL--------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC---CSSTT--------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC---ccccc--------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCC
Confidence 3456677888888888888775422 11110 0000000111111111111 2345667778888899
Q ss_pred ChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH-----hhccCcc
Q 004269 208 NLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA-----LAMMGKL 262 (764)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 262 (764)
++++|...++.+++..+.+...|..++.+|...|+..+|++.|+++.+ .|+.|..
T Consensus 82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 999999999999988899999999999999999999999999998744 5777765
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.00046 Score=71.08 Aligned_cols=167 Identities=7% Similarity=-0.161 Sum_probs=89.0
Q ss_pred CcchHHHHHHhccccCCCCChhcHHHHHHHhh--CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHH
Q 004269 67 ERSRASHLLLNLGHAHHSLGADDFFHILNYCA--RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNL 144 (764)
Q Consensus 67 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 144 (764)
.+..+++.++...+....++.......+..+. ..+.++.+++.+....... +++...+..+...+.+.|+.++|...
T Consensus 64 ~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~ 142 (497)
T d1ya0a1 64 AFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKP 142 (497)
T ss_dssp HTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------
T ss_pred HHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHH
Confidence 35566777776665443333333222222211 1233334433333332222 34556777778888888888888887
Q ss_pred HHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCC
Q 004269 145 IYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYS 224 (764)
Q Consensus 145 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 224 (764)
+....... | ..++..+...+...|++++|...|+...+..+. +..+|+.+...+...|+..+|...|.+.+.-.+
T Consensus 143 ~~~al~~~---~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~ 217 (497)
T d1ya0a1 143 QSSSCSYI---C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217 (497)
T ss_dssp CCHHHHHH---H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred HHHHhCCC---H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 76654321 1 246677888888889999999999998876432 557888898889999999999999999888778
Q ss_pred CCHhhHHHHHHHhhc
Q 004269 225 LSIFSLRKFVWSFTR 239 (764)
Q Consensus 225 ~~~~~~~~li~~~~~ 239 (764)
|.+.++..|...+.+
T Consensus 218 ~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 218 PFPAASTNLQKALSK 232 (497)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888776654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.78 E-value=0.016 Score=48.94 Aligned_cols=116 Identities=9% Similarity=-0.077 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 004269 123 KCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKL 202 (764)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 202 (764)
..+.-....+.+.|++++|...|++........+. ...+. ......+ ....|..+-.+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~--------------~~~~~-~~~~~~~-------~~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYG--------------LSEKE-SKASESF-------LLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--------------CCHHH-HHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc--------------cchhh-hhhcchh-------HHHHHHhHHHH
Confidence 34555666677777777777777665432111110 00000 0111111 12345567778
Q ss_pred HHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 203 AVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
|.+.|++++|...++..++..|.+..+|..+..+|...|++++|...|+.+.+ +.|+.
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n 131 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQN 131 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTC
T ss_pred HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC
Confidence 89999999999999999998999999999999999999999999999999987 66665
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.74 E-value=0.0069 Score=51.41 Aligned_cols=114 Identities=6% Similarity=-0.067 Sum_probs=82.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHH
Q 004269 125 YLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGK-NEVTYTELLKLA 203 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~ 203 (764)
+......+...|++++|+..|++..+.. .............. +.| ....|..+-.++
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~-------------~~~~~~~~~~~~~~---------~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV-------------EGSRAAAEDADGAK---------LQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------HHHHHHSCHHHHGG---------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh-------------hhhhhhhhhHHHHH---------hChhhHHHHHHHHHHH
Confidence 4556667778888888888887664310 00000001111000 111 344566677788
Q ss_pred HhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
.+.|++++|...+..+++-.+.++.+|..+..+|...|+++.|...|+...+ +.|+.
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n 144 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPED 144 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH--hCCCC
Confidence 9999999999999999998899999999999999999999999999999998 56654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.63 E-value=0.0011 Score=61.16 Aligned_cols=52 Identities=17% Similarity=0.098 Sum_probs=35.9
Q ss_pred HhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 004269 204 VWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVA 255 (764)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (764)
.+.|++++|...++..++..|.|...+..+...|+..|++++|.+.|+...+
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456666666666666666666777777777777777777777777777666
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.58 E-value=0.0011 Score=60.93 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=31.4
Q ss_pred CCCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 004269 99 RSPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGE 150 (764)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 150 (764)
+.|++++|++.+++.++.. +.|...+..+...|+..|++++|.+.|+...+
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4466666666666666653 44556666666666666666666666666544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.56 E-value=0.0096 Score=48.84 Aligned_cols=101 Identities=8% Similarity=-0.101 Sum_probs=58.0
Q ss_pred HccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHH
Q 004269 133 CKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAV 212 (764)
Q Consensus 133 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 212 (764)
-+.+.+++|+..|+...+.+ |.+...+..+..+|...+++..+.+ ..+.+++|
T Consensus 8 ~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e-------------------------~~~~~~~A 60 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISD-------------------------AKQMIQEA 60 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHH-------------------------HHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhH-------------------------HHHHHHHH
Confidence 34455666666666665543 3344455555555544333221111 12334556
Q ss_pred HHHHHHHHhcCCCCHhhHHHHHHHhhccC-----------CHHHHHHHHHHHHHhhccCcc
Q 004269 213 HEIWEDYIKHYSLSIFSLRKFVWSFTRLR-----------DLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~ 262 (764)
...++..++-.|.+..+|..+..+|...| .++.|.+.|++..+ +.|+.
T Consensus 61 i~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~ 119 (145)
T d1zu2a1 61 ITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDN 119 (145)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCH
Confidence 66666666656666666666666665543 36888999999887 67765
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.83 E-value=0.25 Score=37.45 Aligned_cols=138 Identities=12% Similarity=0.011 Sum_probs=96.9
Q ss_pred CCChhHHHHHHHHHHHcCccccHHHHHHHHHHHHccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHH
Q 004269 100 SPDPLFVMETWRMMEEKEIGLNNKCYLLMMQALCKGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANL 179 (764)
Q Consensus 100 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 179 (764)
.|..++..++..+.... .+..-||..|--....-+-+-..++++.+..-+.+.|- .-...++..+.+.+
T Consensus 15 dG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C-~Nlk~vv~C~~~~n------- 83 (161)
T d1wy6a1 15 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC-QNLKSVVECGVINN------- 83 (161)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC-SCTHHHHHHHHHTT-------
T ss_pred hhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhh-hcHHHHHHHHHHhc-------
Confidence 47777777777777664 25556666666666666667777777777554433221 11223333333332
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhcc
Q 004269 180 CLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMM 259 (764)
Q Consensus 180 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 259 (764)
.++.-+...++....+|.-++-.+++..+.+...+++...-.+..+|-+.|...++..++.+.-++|++
T Consensus 84 -----------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 84 -----------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp -----------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred -----------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 244455667778888999999999999988888999999999999999999999999999999998875
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=95.82 E-value=0.06 Score=44.45 Aligned_cols=62 Identities=23% Similarity=0.045 Sum_probs=35.7
Q ss_pred HHHHH--HHHHHccCCHHHHHHHHHHHhhhcCCCCC----------hhhhHHHHHHHhccCCHHHHHHHHHHHh
Q 004269 124 CYLLM--MQALCKGGYLEEASNLIYFLGERYGIYPI----------LPVYNSFLGACAKLHSMVHANLCLDLMD 185 (764)
Q Consensus 124 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 185 (764)
+|..+ ...+...|++++|+..|++..+...-.|+ ...|+.+..+|.+.|++++|...++...
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 44444 44455667777777777776543222222 2345566666666666666666665544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=95.81 E-value=0.097 Score=43.11 Aligned_cols=92 Identities=11% Similarity=-0.015 Sum_probs=60.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-CCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCH
Q 004269 586 IKILLDYGDFDEALNLLDLVSLE-GIPHD----------VLLYNTILKKACEKGRIDVIEFIIEQMHQN-----KVQPDP 649 (764)
Q Consensus 586 i~~~~~~g~~~~A~~~~~~m~~~-~~~p~----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~ 649 (764)
...+.+.|++++|+..|++.++. .-.|+ ...|+.+..+|.+.|++++|...+++.++. ...++.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 33455667777777777777641 11111 356777888888888888888888877641 222222
Q ss_pred H-----HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004269 650 S-----TCHFVFSGYVNCGFHNSAMEALQVLSM 677 (764)
Q Consensus 650 ~-----~~~~ll~~~~~~g~~~~a~~~~~~~~~ 677 (764)
. .++.+-.+|...|++++|++.|++...
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 344455688999999999999887543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.40 E-value=0.037 Score=41.10 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=38.0
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHhc-------CCCCHhhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 198 ELLKLAVWQKNLSAVHEIWEDYIKH-------YSLSIFSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 198 ~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
.+...+.+.|++++|...|++..+. ......+++.|..+|.+.|++++|+..++++.+ +.|+.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~~ 79 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH--hCcCC
Confidence 4444555555555555555555432 111134567777777777888888888877777 55554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.12 E-value=0.06 Score=39.88 Aligned_cols=63 Identities=6% Similarity=-0.165 Sum_probs=32.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhcCC----CCC-hhhhHHHHHHHhccCCHHHHHHHHHHHhhc
Q 004269 125 YLLMMQALCKGGYLEEASNLIYFLGERYGI----YPI-LPVYNSFLGACAKLHSMVHANLCLDLMDSR 187 (764)
Q Consensus 125 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 187 (764)
+-.+...+.+.|++++|+..|++..+.... .++ ..+++.|..++.+.|++++|+..+++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 334555556666666666666555332110 111 234555566666666666666666665553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.94 E-value=0.52 Score=35.67 Aligned_cols=120 Identities=8% Similarity=-0.005 Sum_probs=52.6
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHC-CC----------------CCCHHHHH
Q 004269 521 EAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRD-GF----------------YPQTMTYT 583 (764)
Q Consensus 521 ~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~----------------~p~~~~~~ 583 (764)
..|..++..++..+.... .+..-||.+|--....-+-+...+.++.+-+. .+ ..+...++
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~vd 90 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVN 90 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHH
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHHHH
Confidence 345666666666666553 24445555554444444444444444443321 00 01222233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004269 584 ALIKILLDYGDFDEALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 584 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 644 (764)
..++.+..+|+-|.-.++++.+.+.+ +|++...-.+..+|.+-|+..++.+++.+.-+.|
T Consensus 91 lALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 91 KALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 33344444444444444444433322 3444444444444444444444444444444444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.42 E-value=0.71 Score=36.25 Aligned_cols=110 Identities=7% Similarity=-0.133 Sum_probs=60.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 004269 524 ESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSIIRCFKSASALVSMMVRDGFYPQTMTYTALIKILLD----YGDFDEAL 599 (764)
Q Consensus 524 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 599 (764)
+.++|+++|++..+.|.. .. ...+ +.....+.++|..+++...+.| ++.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~-~a--~~~l--~~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM-FG--CLSL--VSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT-TH--HHHH--HTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh-hh--hhhh--ccccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 456677777776666522 11 1111 1223356667777777776665 33444445555543 33567777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 004269 600 NLLDLVSLEGIPHDVLLYNTILKKACE----KGRIDVIEFIIEQMHQNK 644 (764)
Q Consensus 600 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 644 (764)
++|++..+.| ++.....|-..|.. ..+.++|.+++++..+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 7777776654 23333344444433 346667777777766655
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.61 E-value=1.1 Score=35.05 Aligned_cols=111 Identities=8% Similarity=0.014 Sum_probs=69.8
Q ss_pred cHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCChhHHHHHH
Q 004269 492 MIRELIQYFCDSKTPLGTPTYNTVLHSLVEAQESHRAMEIFKQMKTCGIPPNAATYNIMIDCCSI----IRCFKSASALV 567 (764)
Q Consensus 492 ~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~ 567 (764)
++++|.+.|.+.-...+...+..+.. ....+.++|+.+|++..+.| +......|-..|.. ..+.++|..+|
T Consensus 8 d~~~A~~~~~kaa~~g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~ 82 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYY 82 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHH
Confidence 45566666655322223333333322 23467788999999988876 33444444444443 35788999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 004269 568 SMMVRDGFYPQTMTYTALIKILLD----YGDFDEALNLLDLVSLEGI 610 (764)
Q Consensus 568 ~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~ 610 (764)
+...+.| ++.....|...|.. ..+.++|.++|++..+.|.
T Consensus 83 ~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 83 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 9998876 34445556666665 3578899999998877663
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.10 E-value=1.9 Score=30.83 Aligned_cols=59 Identities=10% Similarity=0.118 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004269 597 EALNLLDLVSLEGIPHDVLLYNTILKKACEKGRIDVIEFIIEQMHQNKVQPDPSTCHFVF 656 (764)
Q Consensus 597 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 656 (764)
++.+-++.+....+-|++.+..+.+++|.+.+|+..|.++++-.+.+ +.++...|..++
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil 82 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence 44455555555566677777777777777777777777777766542 333444555444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.59 E-value=1.5 Score=33.34 Aligned_cols=70 Identities=9% Similarity=-0.089 Sum_probs=45.2
Q ss_pred CChhhHHHHHHHHHhh---cChhHHHHHHHHHHhcCCCCH-hhHHHHHHHhhccCCHHHHHHHHHHHHHhhccCcc
Q 004269 191 KNEVTYTELLKLAVWQ---KNLSAVHEIWEDYIKHYSLSI-FSLRKFVWSFTRLRDLKSAYETLQHMVALAMMGKL 262 (764)
Q Consensus 191 p~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 262 (764)
|+..|--....+++++ .+++++..+++.+.+..+.+. ..+..|.-+|.+.|+++.|.+.++.+.+ +.|+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n 106 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 106 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCc
Confidence 4444444444444443 445677777777776554443 4566677778888888888888888887 66654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.70 E-value=4.2 Score=28.98 Aligned_cols=60 Identities=5% Similarity=-0.113 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcChhHHHHHHHHHHhcCCCCHhhHHH
Q 004269 173 SMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNLSAVHEIWEDYIKHYSLSIFSLRK 232 (764)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 232 (764)
+.-++.+-++.+-...+.|++....+.+++|.+.+|+..|.++++.+.....++...|..
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~y 80 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPY 80 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 444555556666666667777777777777777777777777777665433333334433
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=84.11 E-value=19 Score=34.55 Aligned_cols=139 Identities=6% Similarity=-0.102 Sum_probs=78.3
Q ss_pred HHHHHHHhhCCcchHHHHHHhccccCCCCChhcHHHHHHHhhC--CCChhHHHHHHHHHHHcCc-cccHHHHHHHHHHHH
Q 004269 57 MQIVDALCRGERSRASHLLLNLGHAHHSLGADDFFHILNYCAR--SPDPLFVMETWRMMEEKEI-GLNNKCYLLMMQALC 133 (764)
Q Consensus 57 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~ 133 (764)
..+....+.|+...+..+...+.. ++ ...|...-..-.. .....+...+ +.+..- +.........+..++
T Consensus 11 ~~a~~a~~~~~~~~~~~~~~~L~d--yp--L~pYl~~~~l~~~~~~~~~~~i~~F---l~~~p~~P~~~~lr~~~l~~L~ 83 (450)
T d1qsaa1 11 AQIKQAWDNRQMDVVEQMMPGLKD--YP--LYPYLEYRQITDDLMNQPAVTVTNF---VRANPTLPPARTLQSRFVNELA 83 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHSGGGTT--ST--THHHHHHHHHHHTGGGCCHHHHHHH---HHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhhhcC--CC--CHHHHHHHHHHhccccCCHHHHHHH---HHHCCCChhHHHHHHHHHHHHH
Confidence 346678889999999999888843 33 2334333322222 2233333333 333322 223334455577888
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHhccCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhcCh
Q 004269 134 KGGYLEEASNLIYFLGERYGIYPILPVYNSFLGACAKLHSMVHANLCLDLMDSRMVGKNEVTYTELLKLAVWQKNL 209 (764)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 209 (764)
+.+++......+. ..+++...--....+..+.|+.++|...+..+-..|.. ....+..++..+...|.+
T Consensus 84 ~~~~w~~~~~~~~------~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~~~l 152 (450)
T d1qsaa1 84 RREDWRGLLAFSP------EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQ 152 (450)
T ss_dssp HTTCHHHHHHHCC------SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCS
T ss_pred hccCHHHHHHhcc------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhcCCC
Confidence 8898877554332 12334443345667777889999998888777655432 334455555555444433
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.59 E-value=8.1 Score=29.15 Aligned_cols=47 Identities=6% Similarity=0.031 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004269 595 FDEALNLLDLVSLEGIPHDV-LLYNTILKKACEKGRIDVIEFIIEQMHQ 642 (764)
Q Consensus 595 ~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~ 642 (764)
+++++.+++.+...+ +.+. ..+-.|.-+|.+.|++++|.+.++.+++
T Consensus 54 ~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 54 ERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555555544321 1121 2333344445555555555555555553
|