Citrus Sinensis ID: 004366
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 759 | 2.2.26 [Sep-21-2011] | |||||||
| B9HQZ6 | 994 | Probable alanine--tRNA li | yes | no | 0.939 | 0.717 | 0.807 | 0.0 | |
| Q9FFC7 | 978 | Probable alanine--tRNA li | yes | no | 0.886 | 0.688 | 0.769 | 0.0 | |
| C5Z7K4 | 961 | Probable alanine--tRNA li | N/A | no | 0.906 | 0.715 | 0.737 | 0.0 | |
| B8B4H5 | 996 | Probable alanine--tRNA li | N/A | no | 0.880 | 0.670 | 0.751 | 0.0 | |
| B9FSH5 | 932 | Probable alanine--tRNA li | yes | no | 0.880 | 0.716 | 0.750 | 0.0 | |
| Q2JTG8 | 883 | Alanine--tRNA ligase OS=S | yes | no | 0.855 | 0.734 | 0.582 | 0.0 | |
| Q2JLC4 | 884 | Alanine--tRNA ligase OS=S | yes | no | 0.864 | 0.742 | 0.572 | 0.0 | |
| B0JI84 | 874 | Alanine--tRNA ligase OS=M | yes | no | 0.848 | 0.736 | 0.582 | 0.0 | |
| P74423 | 877 | Alanine--tRNA ligase OS=S | N/A | no | 0.848 | 0.734 | 0.573 | 0.0 | |
| Q8DH56 | 882 | Alanine--tRNA ligase OS=T | yes | no | 0.860 | 0.740 | 0.568 | 0.0 |
| >sp|B9HQZ6|SYAP_POPTR Probable alanine--tRNA ligase, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_821063 PE=3 SV=1 | Back alignment and function desciption |
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Score = 1213 bits (3138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 580/718 (80%), Positives = 649/718 (90%), Gaps = 5/718 (0%)
Query: 1 MAHYYPSILPCGHFLFKGATGVP-SARSTSASVQPLTEE-VEDKSQDFPSSGDSIRKRFL 58
+A + PSI PCG+F+ GA AR+T ASVQP+TEE VEDK+++ P SGD+IR+RFL
Sbjct: 49 VALFSPSIFPCGYFILGGARERRFGARNTQASVQPVTEELVEDKTKENPVSGDAIRRRFL 108
Query: 59 DFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDV 118
+FYASR HKVLPSASLVP+DPTVLLTIAGMLQFKPIFLGK PRQVPRA T+Q+CIRTNDV
Sbjct: 109 EFYASRSHKVLPSASLVPDDPTVLLTIAGMLQFKPIFLGKAPRQVPRATTAQKCIRTNDV 168
Query: 119 ENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAF 178
ENVGRT+RHHTFFEMLGNFSFGDYFKKEAI+WAWE ST EFGLPA+RLW+SVYEDDDEAF
Sbjct: 169 ENVGRTTRHHTFFEMLGNFSFGDYFKKEAIKWAWELSTKEFGLPADRLWVSVYEDDDEAF 228
Query: 179 EIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFI 238
EIW+ EVGVPVE IKRMG +DNFW SGATGPCGPCSE+YYDFHP+RG + DLGDD+RFI
Sbjct: 229 EIWHDEVGVPVERIKRMGEEDNFWTSGATGPCGPCSELYYDFHPERGYKNTDLGDDSRFI 288
Query: 239 EFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASE 298
EFYNLVFMQYNK DDGSLEPLKQKNIDTGLGLER+ARILQKVPNNYETDLI+PII+KA+E
Sbjct: 289 EFYNLVFMQYNKMDDGSLEPLKQKNIDTGLGLERLARILQKVPNNYETDLIYPIIEKAAE 348
Query: 299 LANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLL 358
LAN+SYA ++DRT +NLKIIGDHLRAIVYL+SDGV PSNIGRGYVVRRLIRRAVRTGRLL
Sbjct: 349 LANISYALADDRTKMNLKIIGDHLRAIVYLISDGVLPSNIGRGYVVRRLIRRAVRTGRLL 408
Query: 359 GIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEK 418
G+KG G +G FLP+IAEK IELS HID DVKAR IL+EL+REELRFVQTLERGEK
Sbjct: 409 GVKGGGE---DGVFLPAIAEKVIELSPHIDPDVKARGHSILDELQREELRFVQTLERGEK 465
Query: 419 LLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIE 478
LLDQMLA+AL ++S ++P LSG+D FLLYDTFGFPVEIT EVAEE GV +DM GF++E
Sbjct: 466 LLDQMLAEALLNAQKSETLPCLSGKDVFLLYDTFGFPVEITTEVAEEQGVKIDMDGFEVE 525
Query: 479 MENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVS 538
MENQRRQSQAAHN VKL+V++ DLAE + DTEFLGYDTLSA+A+VESLL+NGK VI+VS
Sbjct: 526 MENQRRQSQAAHNVVKLAVENGGDLAENVHDTEFLGYDTLSARAVVESLLLNGKSVIQVS 585
Query: 539 KGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTI 598
+GS+VEVLLN+TPFYAESGGQIGD+GFLYVTQ ++QTAVVE+KDV+KSLGSVFVHKGTI
Sbjct: 586 EGSEVEVLLNKTPFYAESGGQIGDHGFLYVTQDQSKQTAVVEIKDVQKSLGSVFVHKGTI 645
Query: 599 REGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFD 658
REGVLEVGREVEA VD KLRQRAKVHHTATHLLQ+ALKKVIGQETSQAGSLVAFDRLRFD
Sbjct: 646 REGVLEVGREVEAAVDAKLRQRAKVHHTATHLLQSALKKVIGQETSQAGSLVAFDRLRFD 705
Query: 659 FNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVKI 716
FNFHRPL D+ELEEIE LINGWIGD LLQTKVM+L DAK AGAIAMFGEKYGEQV++
Sbjct: 706 FNFHRPLHDSELEEIENLINGWIGDGTLLQTKVMSLTDAKEAGAIAMFGEKYGEQVRV 763
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Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Populus trichocarpa (taxid: 3694) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 7 |
| >sp|Q9FFC7|SYAP_ARATH Probable alanine--tRNA ligase, chloroplastic OS=Arabidopsis thaliana GN=EMB86 PE=1 SV=2 | Back alignment and function description |
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| >sp|C5Z7K4|SYAP_SORBI Probable alanine--tRNA ligase, chloroplastic OS=Sorghum bicolor GN=Sb10g008780 PE=3 SV=1 | Back alignment and function description |
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| >sp|B8B4H5|SYAP_ORYSI Probable alanine--tRNA ligase, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_22356 PE=3 SV=1 | Back alignment and function description |
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| >sp|B9FSH5|SYAP_ORYSJ Probable alanine--tRNA ligase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os06g0245800 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q2JTG8|SYA_SYNJA Alanine--tRNA ligase OS=Synechococcus sp. (strain JA-3-3Ab) GN=alaS PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2JLC4|SYA_SYNJB Alanine--tRNA ligase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=alaS PE=3 SV=1 | Back alignment and function description |
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| >sp|B0JI84|SYA_MICAN Alanine--tRNA ligase OS=Microcystis aeruginosa (strain NIES-843) GN=alaS PE=3 SV=1 | Back alignment and function description |
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| >sp|P74423|SYA_SYNY3 Alanine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=alaS PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8DH56|SYA_THEEB Alanine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=alaS PE=3 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 759 | ||||||
| 225428201 | 1006 | PREDICTED: probable alanyl-tRNA syntheta | 0.943 | 0.711 | 0.817 | 0.0 | |
| 224105089 | 994 | predicted protein [Populus trichocarpa] | 0.939 | 0.717 | 0.807 | 0.0 | |
| 449444378 | 956 | PREDICTED: probable alanine--tRNA ligase | 0.935 | 0.742 | 0.784 | 0.0 | |
| 449518200 | 956 | PREDICTED: probable alanine--tRNA ligase | 0.935 | 0.742 | 0.782 | 0.0 | |
| 356516209 | 980 | PREDICTED: probable alanyl-tRNA syntheta | 0.899 | 0.696 | 0.781 | 0.0 | |
| 356509509 | 957 | PREDICTED: probable alanyl-tRNA syntheta | 0.899 | 0.713 | 0.774 | 0.0 | |
| 30688660 | 978 | alanyl-tRNA synthetase [Arabidopsis thal | 0.886 | 0.688 | 0.769 | 0.0 | |
| 10177227 | 954 | alanyl-tRNA synthetase [Arabidopsis thal | 0.886 | 0.705 | 0.769 | 0.0 | |
| 357467609 | 1005 | Alanyl-tRNA synthetase [Medicago truncat | 0.880 | 0.664 | 0.757 | 0.0 | |
| 297812419 | 978 | aminoacyl-tRNA synthetase family protein | 0.906 | 0.703 | 0.750 | 0.0 |
| >gi|225428201|ref|XP_002278951.1| PREDICTED: probable alanyl-tRNA synthetase, chloroplastic [Vitis vinifera] gi|297744517|emb|CBI37779.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1230 bits (3182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/718 (81%), Positives = 645/718 (89%), Gaps = 2/718 (0%)
Query: 1 MAHYYPSILPCGHFLFKGATGVP-SARSTSASVQPLTEE-VEDKSQDFPSSGDSIRKRFL 58
+A PS LPCGH K V + RSTSAS+QP+TEE VEDKS+D P+SGDSIR RFL
Sbjct: 58 LALISPSGLPCGHSNLKQTREVRFTTRSTSASIQPMTEELVEDKSKDLPTSGDSIRHRFL 117
Query: 59 DFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDV 118
DFYASRGHKVLPS+SLVP+DPTVLLTIAGMLQFKPIFLGKVPRQVPRA T+QRCIRTNDV
Sbjct: 118 DFYASRGHKVLPSSSLVPDDPTVLLTIAGMLQFKPIFLGKVPRQVPRATTAQRCIRTNDV 177
Query: 119 ENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAF 178
ENVG+TSRHHTFFEMLGNFSFGDYFKKEAI+WAWE ST+E+GLPA+RLWISVYEDDDEA
Sbjct: 178 ENVGKTSRHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEYGLPADRLWISVYEDDDEAL 237
Query: 179 EIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFI 238
IW KEVGVPVE IKRMGA+DNFW SG TGPCGPCSEIYYDFHP+RG SDVDLGDDTRFI
Sbjct: 238 AIWTKEVGVPVERIKRMGAEDNFWTSGVTGPCGPCSEIYYDFHPERGYSDVDLGDDTRFI 297
Query: 239 EFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASE 298
EFYNLVFMQYNKKDDGSLEPLKQ NIDTGLGLER+ARILQKVPNNYETDLI+PII+KASE
Sbjct: 298 EFYNLVFMQYNKKDDGSLEPLKQMNIDTGLGLERMARILQKVPNNYETDLIYPIIEKASE 357
Query: 299 LANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLL 358
LANVSYA ++D +NLK+IGDHLRAIVYL+SDGV PSNIGRGYV RRLIRRAVRTGRLL
Sbjct: 358 LANVSYALADDHAKMNLKVIGDHLRAIVYLISDGVVPSNIGRGYVARRLIRRAVRTGRLL 417
Query: 359 GIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEK 418
GIKGDGRGN EGAFLP+IAEK IELS+ ID DVK+R RILEELKREELRFVQTLERGEK
Sbjct: 418 GIKGDGRGNPEGAFLPTIAEKVIELSSQIDPDVKSRAPRILEELKREELRFVQTLERGEK 477
Query: 419 LLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIE 478
LLD+MLA+AL + E+G+ P LSG+D FLLYDT+GFPVEIT E AEE GV +DM GF+IE
Sbjct: 478 LLDEMLANALLNSNENGNGPILSGKDVFLLYDTYGFPVEITTEAAEERGVGIDMNGFEIE 537
Query: 479 MENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVS 538
MENQRRQSQAAHNAVKL+V +SADL E I DTEFLGY+TLS KA++E LLVNG PVI+VS
Sbjct: 538 MENQRRQSQAAHNAVKLAVGNSADLTENISDTEFLGYETLSTKAVIEGLLVNGNPVIQVS 597
Query: 539 KGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTI 598
+GSDVE+ LNRTPFYAESGGQIGD+GFLYV + NQ+ AVVE+KDV+KSLG++FVHKGTI
Sbjct: 598 EGSDVEIFLNRTPFYAESGGQIGDHGFLYVNEDRNQKNAVVEIKDVQKSLGNIFVHKGTI 657
Query: 599 REGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFD 658
+EGV+EVG+EVEA VD LRQRAK+HHTATHLLQAALKKVIG ETSQAGSLVAFDRLRFD
Sbjct: 658 KEGVVEVGKEVEAAVDANLRQRAKIHHTATHLLQAALKKVIGDETSQAGSLVAFDRLRFD 717
Query: 659 FNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVKI 716
FNFHRPL + EL EIE LINGWIGDA LLQTKVM L DAKRAGAIAMFGEKYGEQV++
Sbjct: 718 FNFHRPLQEKELVEIEELINGWIGDATLLQTKVMPLADAKRAGAIAMFGEKYGEQVRV 775
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224105089|ref|XP_002313683.1| predicted protein [Populus trichocarpa] gi|313471500|sp|B9HQZ6.1|SYAP_POPTR RecName: Full=Probable alanine--tRNA ligase, chloroplastic; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS gi|222850091|gb|EEE87638.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449444378|ref|XP_004139952.1| PREDICTED: probable alanine--tRNA ligase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449518200|ref|XP_004166131.1| PREDICTED: probable alanine--tRNA ligase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356516209|ref|XP_003526788.1| PREDICTED: probable alanyl-tRNA synthetase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356509509|ref|XP_003523490.1| PREDICTED: probable alanyl-tRNA synthetase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|30688660|ref|NP_680210.2| alanyl-tRNA synthetase [Arabidopsis thaliana] gi|322510075|sp|Q9FFC7.2|SYAP_ARATH RecName: Full=Probable alanine--tRNA ligase, chloroplastic; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS; AltName: Full=Protein EMBRYO DEFECTIVE 1030; AltName: Full=Protein EMBRYO DEFECTIVE 263; AltName: Full=Protein EMBRYO DEFECTIVE 86; Flags: Precursor gi|332005698|gb|AED93081.1| alanyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|10177227|dbj|BAB10601.1| alanyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|357467609|ref|XP_003604089.1| Alanyl-tRNA synthetase [Medicago truncatula] gi|355493137|gb|AES74340.1| Alanyl-tRNA synthetase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297812419|ref|XP_002874093.1| aminoacyl-tRNA synthetase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319930|gb|EFH50352.1| aminoacyl-tRNA synthetase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 759 | ||||||
| TAIR|locus:504954871 | 978 | EMB1030 "EMBRYO DEFECTIVE 1030 | 0.910 | 0.706 | 0.739 | 3.7e-277 | |
| TIGR_CMR|CHY_0538 | 874 | CHY_0538 "alanyl-tRNA syntheta | 0.847 | 0.735 | 0.445 | 1.6e-148 | |
| TIGR_CMR|CBU_1052 | 865 | CBU_1052 "alanyl-tRNA syntheta | 0.482 | 0.423 | 0.436 | 4e-136 | |
| TIGR_CMR|GSU_0148 | 875 | GSU_0148 "alanyl-tRNA syntheta | 0.844 | 0.732 | 0.421 | 2e-134 | |
| UNIPROTKB|O07438 | 904 | alaS "Alanine--tRNA ligase" [M | 0.853 | 0.716 | 0.411 | 1.3e-128 | |
| TIGR_CMR|CJE_0613 | 842 | CJE_0613 "alanyl-tRNA syntheta | 0.400 | 0.361 | 0.512 | 1.9e-123 | |
| UNIPROTKB|P00957 | 876 | alaS "alanyl-tRNA synthetase" | 0.642 | 0.557 | 0.474 | 2e-118 | |
| TIGR_CMR|ECH_0981 | 887 | ECH_0981 "alanyl-tRNA syntheta | 0.856 | 0.732 | 0.397 | 2.9e-118 | |
| TIGR_CMR|NSE_0156 | 848 | NSE_0156 "alanyl-tRNA syntheta | 0.528 | 0.472 | 0.417 | 9.8e-116 | |
| UNIPROTKB|Q56648 | 860 | alaS "Alanine--tRNA ligase" [V | 0.654 | 0.577 | 0.458 | 6.4e-115 |
| TAIR|locus:504954871 EMB1030 "EMBRYO DEFECTIVE 1030" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2664 (942.8 bits), Expect = 3.7e-277, P = 3.7e-277
Identities = 513/694 (73%), Positives = 586/694 (84%)
Query: 25 ARSTSASVQPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLT 84
A+S+S SVQP++E+ ++ Q SGDSIR+RFL+F+ASRGHKVLPS+SLVPEDPTVLLT
Sbjct: 55 AKSSSVSVQPVSEDAKEDYQSKDVSGDSIRRRFLEFFASRGHKVLPSSSLVPEDPTVLLT 114
Query: 85 IAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFK 144
IAGMLQFKPIFLGKVPR+VP A T+QRCIRTND+ENVG+T+RHHTFFEMLGNFSFGDYFK
Sbjct: 115 IAGMLQFKPIFLGKVPREVPCATTAQRCIRTNDLENVGKTARHHTFFEMLGNFSFGDYFK 174
Query: 145 KEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNS 204
KEAI+WAWE ST+EFGLPANR+W+S+YEDDDEAFEIW EVGV VE IKRMG DNFW S
Sbjct: 175 KEAIKWAWELSTIEFGLPANRVWVSIYEDDDEAFEIWKNEVGVSVERIKRMGEADNFWTS 234
Query: 205 GATGPCGPCSEIYYDFHPDRGCS-DVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKN 263
G TGPCGPCSE+YYDF+P+RG DVDLGDDTRFIEFYNLVFMQYNK +DG LEPLKQKN
Sbjct: 235 GPTGPCGPCSELYYDFYPERGYDEDVDLGDDTRFIEFYNLVFMQYNKTEDGLLEPLKQKN 294
Query: 264 IDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLR 323
IDTGLGLERIA+ILQKVPNNYETDLI+PII K SELAN+SY +ND+ +LK+I DH+R
Sbjct: 295 IDTGLGLERIAQILQKVPNNYETDLIYPIIAKISELANISYDSANDKAKTSLKVIADHMR 354
Query: 324 AIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIEL 383
A+VYL+SDGV PSNIGRGYVVRRLIRRAVR G+ LGI GD GNL+GAFLP++AEK IEL
Sbjct: 355 AVVYLISDGVSPSNIGRGYVVRRLIRRAVRKGKSLGINGDMNGNLKGAFLPAVAEKVIEL 414
Query: 384 STHIDSDVKAXXXXXXXXXXXXXXXFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQ 443
ST+IDSDVK F +TLERGEKLLDQ L DALS ++ P L G+
Sbjct: 415 STYIDSDVKLKASRIIEEIRQEELHFKKTLERGEKLLDQKLNDALSIADKTKDTPYLDGK 474
Query: 444 DAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADL 503
DAFLLYDTFGFPVEIT EVAEE GVS+DM GF++EMENQRRQSQAAHN VKL+V+D AD+
Sbjct: 475 DAFLLYDTFGFPVEITAEVAEERGVSIDMNGFEVEMENQRRQSQAAHNVVKLTVEDDADM 534
Query: 504 AEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDY 563
+ I DTEFLGYD+LSA+A+V+SLLVNGKPVI+VS+GS+VEVLL+RTPFYAESGGQI D+
Sbjct: 535 TKNIADTEFLGYDSLSARAVVKSLLVNGKPVIRVSEGSEVEVLLDRTPFYAESGGQIADH 594
Query: 564 GFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIXXXXXXXXXXXXAIVDPKLRQRAKV 623
GFLYV+ NQ+ AVVEV DV+KSL +FVHKGT+ A VD LRQRAKV
Sbjct: 595 GFLYVSSDGNQEKAVVEVSDVQKSL-KIFVHKGTVKSGALEVGKEVEAAVDADLRQRAKV 653
Query: 624 HHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGD 683
HHTATHLLQ+ALKKV+GQETSQAGSLVAFDRLRFDFNF+R L D ELEEIE LIN WIGD
Sbjct: 654 HHTATHLLQSALKKVVGQETSQAGSLVAFDRLRFDFNFNRSLHDNELEEIECLINRWIGD 713
Query: 684 ANLLQTKVMALDDAKRAGAIAMFGEKYGE-QVKI 716
A L+TKV+ L DAKRAGAIAMFGEKY E +V++
Sbjct: 714 ATRLETKVLPLADAKRAGAIAMFGEKYDENEVRV 747
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| TIGR_CMR|CHY_0538 CHY_0538 "alanyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CBU_1052 CBU_1052 "alanyl-tRNA synthetase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
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| TIGR_CMR|GSU_0148 GSU_0148 "alanyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O07438 alaS "Alanine--tRNA ligase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CJE_0613 CJE_0613 "alanyl-tRNA synthetase" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P00957 alaS "alanyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
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| TIGR_CMR|ECH_0981 ECH_0981 "alanyl-tRNA synthetase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|NSE_0156 NSE_0156 "alanyl-tRNA synthetase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q56648 alaS "Alanine--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7VEG5 | SYA_PROMA | 6, ., 1, ., 1, ., 7 | 0.5344 | 0.8682 | 0.7387 | yes | no |
| Q015G2 | SYAP_OSTTA | 6, ., 1, ., 1, ., 7 | 0.5652 | 0.8616 | 0.6920 | yes | no |
| Q46I13 | SYA_PROMT | 6, ., 1, ., 1, ., 7 | 0.5326 | 0.8537 | 0.7313 | yes | no |
| B1WYQ5 | SYA_CYAA5 | 6, ., 1, ., 1, ., 7 | 0.5710 | 0.8511 | 0.7349 | yes | no |
| Q9FFC7 | SYAP_ARATH | 6, ., 1, ., 1, ., 7 | 0.7699 | 0.8866 | 0.6881 | yes | no |
| Q7U3R9 | SYA_SYNPX | 6, ., 1, ., 1, ., 7 | 0.5562 | 0.8458 | 0.7221 | yes | no |
| B9HQZ6 | SYAP_POPTR | 6, ., 1, ., 1, ., 7 | 0.8077 | 0.9393 | 0.7173 | yes | no |
| Q7V419 | SYA_PROMM | 6, ., 1, ., 1, ., 7 | 0.5397 | 0.8524 | 0.7253 | yes | no |
| Q7NI36 | SYA_GLOVI | 6, ., 1, ., 1, ., 7 | 0.5344 | 0.8445 | 0.7359 | yes | no |
| Q8YUD4 | SYA_NOSS1 | 6, ., 1, ., 1, ., 7 | 0.5695 | 0.8537 | 0.7363 | yes | no |
| Q10VG8 | SYA_TRIEI | 6, ., 1, ., 1, ., 7 | 0.5673 | 0.8511 | 0.7391 | yes | no |
| A2BTZ9 | SYA_PROM5 | 6, ., 1, ., 1, ., 7 | 0.5095 | 0.8616 | 0.7381 | yes | no |
| B0JI84 | SYA_MICAN | 6, ., 1, ., 1, ., 7 | 0.5829 | 0.8484 | 0.7368 | yes | no |
| A2CDK7 | SYA_PROM3 | 6, ., 1, ., 1, ., 7 | 0.5427 | 0.8524 | 0.7253 | yes | no |
| B1XP68 | SYA_SYNP2 | 6, ., 1, ., 1, ., 7 | 0.5605 | 0.8484 | 0.7343 | yes | no |
| A8G242 | SYA_PROM2 | 6, ., 1, ., 1, ., 7 | 0.5044 | 0.8445 | 0.7234 | yes | no |
| Q3AGN4 | SYA_SYNSC | 6, ., 1, ., 1, ., 7 | 0.5502 | 0.8458 | 0.7221 | yes | no |
| Q31DD9 | SYA_PROM9 | 6, ., 1, ., 1, ., 7 | 0.5119 | 0.8445 | 0.7234 | yes | no |
| Q2JTG8 | SYA_SYNJA | 6, ., 1, ., 1, ., 7 | 0.5829 | 0.8550 | 0.7349 | yes | no |
| C5Z7K4 | SYAP_SORBI | 6, ., 1, ., 1, ., 7 | 0.7376 | 0.9064 | 0.7159 | N/A | no |
| Q3AVV3 | SYA_SYNS9 | 6, ., 1, ., 1, ., 7 | 0.5440 | 0.8458 | 0.7213 | yes | no |
| A2BNH2 | SYA_PROMS | 6, ., 1, ., 1, ., 7 | 0.5142 | 0.8484 | 0.7268 | yes | no |
| A5GPF9 | SYA_SYNPW | 6, ., 1, ., 1, ., 7 | 0.5592 | 0.8524 | 0.7261 | yes | no |
| Q5N4B5 | SYA_SYNP6 | 6, ., 1, ., 1, ., 7 | 0.5680 | 0.8484 | 0.7351 | yes | no |
| B0CFX4 | SYA_ACAM1 | 6, ., 1, ., 1, ., 7 | 0.5575 | 0.8484 | 0.7376 | yes | no |
| A2BZG2 | SYA_PROM1 | 6, ., 1, ., 1, ., 7 | 0.5317 | 0.8392 | 0.7189 | yes | no |
| Q7V3N0 | SYA_PROMP | 6, ., 1, ., 1, ., 7 | 0.5036 | 0.8616 | 0.7381 | yes | no |
| Q0I6G6 | SYA_SYNS3 | 6, ., 1, ., 1, ., 7 | 0.5635 | 0.8511 | 0.7234 | yes | no |
| Q2JLC4 | SYA_SYNJB | 6, ., 1, ., 1, ., 7 | 0.5720 | 0.8642 | 0.7420 | yes | no |
| A9B9E5 | SYA_PROM4 | 6, ., 1, ., 1, ., 7 | 0.5234 | 0.8695 | 0.7415 | yes | no |
| A3PA95 | SYA_PROM0 | 6, ., 1, ., 1, ., 7 | 0.5104 | 0.8445 | 0.7234 | yes | no |
| B8B4H5 | SYAP_ORYSI | 6, ., 1, ., 1, ., 7 | 0.7518 | 0.8801 | 0.6706 | N/A | no |
| Q31PW3 | SYA_SYNE7 | 6, ., 1, ., 1, ., 7 | 0.5695 | 0.8484 | 0.7351 | yes | no |
| Q8DH56 | SYA_THEEB | 6, ., 1, ., 1, ., 7 | 0.5680 | 0.8603 | 0.7403 | yes | no |
| A5GWM4 | SYA_SYNR3 | 6, ., 1, ., 1, ., 7 | 0.5562 | 0.8458 | 0.7278 | yes | no |
| Q3MGN4 | SYA_ANAVT | 6, ., 1, ., 1, ., 7 | 0.5695 | 0.8537 | 0.7363 | yes | no |
| B9FSH5 | SYAP_ORYSJ | 6, ., 1, ., 1, ., 7 | 0.7503 | 0.8801 | 0.7167 | yes | no |
| B2J876 | SYA_NOSP7 | 6, ., 1, ., 1, ., 7 | 0.5680 | 0.8537 | 0.7363 | yes | no |
| A4S051 | SYAP_OSTLU | 6, ., 1, ., 1, ., 7 | 0.5570 | 0.8603 | 0.7207 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.7 | 0.914 |
| 3rd Layer | 6.1.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 759 | |||
| PLN02900 | 936 | PLN02900, PLN02900, alanyl-tRNA synthetase | 0.0 | |
| PRK00252 | 865 | PRK00252, alaS, alanyl-tRNA synthetase; Reviewed | 0.0 | |
| COG0013 | 879 | COG0013, AlaS, Alanyl-tRNA synthetase [Translation | 0.0 | |
| TIGR00344 | 851 | TIGR00344, alaS, alanine--tRNA ligase | 0.0 | |
| pfam01411 | 551 | pfam01411, tRNA-synt_2c, tRNA synthetases class II | 0.0 | |
| cd00673 | 232 | cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS | 1e-131 | |
| PRK01584 | 594 | PRK01584, PRK01584, alanyl-tRNA synthetase; Provis | 1e-122 | |
| PRK13902 | 900 | PRK13902, alaS, alanyl-tRNA synthetase; Provisiona | 4e-93 | |
| TIGR03683 | 902 | TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase | 8e-89 | |
| PRK01584 | 594 | PRK01584, PRK01584, alanyl-tRNA synthetase; Provis | 6e-24 | |
| COG2872 | 241 | COG2872, COG2872, Predicted metal-dependent hydrol | 1e-16 | |
| PLN02961 | 223 | PLN02961, PLN02961, alanine-tRNA ligase | 3e-07 |
| >gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 1063 bits (2750), Expect = 0.0
Identities = 339/711 (47%), Positives = 462/711 (64%), Gaps = 51/711 (7%)
Query: 39 VEDKSQDFPSSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLG 97
ED + + GD IR+ FL F+ S+GH LPS+ LVP +DPT+L T AGM QFKPIFLG
Sbjct: 2 PEDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLG 61
Query: 98 KV-----PRQVPRAATSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAI 148
R++PRA +Q+CIR ND+++VG+ + HHTFFEMLGN+SFGDYFKKEAI
Sbjct: 62 TADPNTPLRKLPRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAI 121
Query: 149 QWAWEFSTVEFGLPANRLWISVYEDDD------EAFEIWNKEVGVPVEHIKRMGADDNFW 202
WAWE T +GLPA+RL+ + + D+ EA IW + P E + G DNFW
Sbjct: 122 GWAWELLTKVYGLPADRLYATYFGGDEKQAPDDEARAIWLDYL--PEERVLPFGCKDNFW 179
Query: 203 NSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQK 262
G TGPCGPCSEI+YD +R +D+ DD RFIE +NLVF+Q+N++ DGSL+PL K
Sbjct: 180 EMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPAK 239
Query: 263 NIDTGLGLERIARILQKVPNNYETDLIFPIIKKASE------LANVSYAQSNDRTNLNLK 316
++DTG+GLER+A ILQ P+NY+TDL PI E A A+ +DR ++ +
Sbjct: 240 HVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYR 299
Query: 317 IIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSI 376
++ DH+R + + ++DGV PSN GRGYV+RRL+RRAVR GRLL E F P++
Sbjct: 300 VVADHIRTLSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLL-------LGAEEGFFPAL 352
Query: 377 AEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGS 436
E +ELS + +VK E+RI E + EEL F +TLE+G + + LA A +
Sbjct: 353 VEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKKALAAAKANGG---- 408
Query: 437 VPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHN----- 491
P LSG+DAFLLYDT+GFPV++T+ +AEE GV+VDM+GF+ ME R +S+AAH
Sbjct: 409 -PVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGG 467
Query: 492 AVKLSVDDSADLAEK--IPDTEFLGYDTLS-AKAIVESLLVNGKPVIKVSKGSDVEVLLN 548
A++L+ + ++ L ++ +FL YD LS +A+V+++L G V VS+G +V ++L+
Sbjct: 468 AIELAAEATSWLQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLD 527
Query: 549 RTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGRE 608
+T FYAESGGQIGD G L + G AVVEV DV+K+ G +H GT+ EG + VG
Sbjct: 528 KTSFYAESGGQIGDTGVLEGSGG-----AVVEVSDVQKA-GGFVLHIGTVTEGSVSVGDA 581
Query: 609 VEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDT 668
V VD R+R +HTATHLL +ALK+V+G Q GSLVAF++LRFDF+ +P+
Sbjct: 582 VTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPE 641
Query: 669 ELEEIERLINGWIGDANLLQTKVMALDDAKR-AGAIAMFGEKYGEQVKISS 718
EL E+E L+N WIGDA ++ K M L DAKR G A+FGEKY + V++ S
Sbjct: 642 ELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVS 692
|
Length = 936 |
| >gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase | Back alignment and domain information |
|---|
| >gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) | Back alignment and domain information |
|---|
| >gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase | Back alignment and domain information |
|---|
| >gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 759 | |||
| COG0013 | 879 | AlaS Alanyl-tRNA synthetase [Translation, ribosoma | 100.0 | |
| PLN02900 | 936 | alanyl-tRNA synthetase | 100.0 | |
| TIGR00344 | 851 | alaS alanine--tRNA ligase. The model describes ala | 100.0 | |
| PRK00252 | 865 | alaS alanyl-tRNA synthetase; Reviewed | 100.0 | |
| KOG0188 | 895 | consensus Alanyl-tRNA synthetase [Translation, rib | 100.0 | |
| TIGR03683 | 902 | A-tRNA_syn_arch alanyl-tRNA synthetase. This famil | 100.0 | |
| PRK13902 | 900 | alaS alanyl-tRNA synthetase; Provisional | 100.0 | |
| PRK01584 | 594 | alanyl-tRNA synthetase; Provisional | 100.0 | |
| PF01411 | 552 | tRNA-synt_2c: tRNA synthetases class II (A); Inter | 100.0 | |
| cd00673 | 232 | AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II | 100.0 | |
| COG2872 | 241 | Predicted metal-dependent hydrolases related to al | 100.0 | |
| PLN02961 | 223 | alanine-tRNA ligase | 100.0 | |
| KOG2105 | 415 | consensus Predicted metal-dependent hydrolase, con | 99.96 | |
| PLN02837 | 614 | threonine-tRNA ligase | 99.64 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 99.63 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 99.52 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 99.43 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 99.42 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 99.21 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 98.77 | |
| PF07973 | 44 | tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco | 98.56 | |
| smart00863 | 44 | tRNA_SAD Threonyl and Alanyl tRNA synthetase secon | 98.53 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 96.2 | |
| PRK09348 | 283 | glyQ glycyl-tRNA synthetase subunit alpha; Validat | 95.73 | |
| TIGR00388 | 293 | glyQ glycyl-tRNA synthetase, tetrameric type, alph | 95.69 | |
| PF01411 | 552 | tRNA-synt_2c: tRNA synthetases class II (A); Inter | 94.64 | |
| cd00733 | 279 | GlyRS_alpha_core Class II Glycyl-tRNA synthetase ( | 94.55 | |
| PRK14908 | 1000 | glycyl-tRNA synthetase; Provisional | 93.03 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 89.73 | |
| PRK09350 | 306 | poxB regulator PoxA; Provisional | 88.76 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 88.23 | |
| PF02091 | 284 | tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit | 88.15 | |
| COG0752 | 298 | GlyQ Glycyl-tRNA synthetase, alpha subunit [Transl | 86.73 | |
| TIGR00462 | 304 | genX lysyl-tRNA synthetase-like protein GenX. Many | 85.03 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 83.76 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 83.49 | |
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 82.22 |
| >COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-228 Score=1956.64 Aligned_cols=681 Identities=50% Similarity=0.860 Sum_probs=647.6
Q ss_pred CCChHHHHHHHHHHHhhCCCeeecCccCcC-CCCccceeccccccccccccccCCCCCCCcccccCcccCCCccccCCCC
Q 004366 47 PSSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTS 125 (759)
Q Consensus 47 ~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp-~d~tllf~nAGm~~fk~~f~g~~~p~~~r~~~~QkCiR~nDldnVG~t~ 125 (759)
+||++|||++||+||++|||+++||||||| +|||||||||||+||||||+|.++||++|+||||||||+|||||||+|+
T Consensus 5 ~~t~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~f~g~v~p~~~r~~~sQkcIR~NDieNVG~T~ 84 (879)
T COG0013 5 KLTTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPANRAVTSQKCIRTNDIDNVGYTA 84 (879)
T ss_pred cCCHHHHHHHHHHHHHHCCCeecCCCCcCCCCCCCeEEeecccccchhhhcCCCCCCCCCeeccccccccCchhhcCccc
Confidence 499999999999999999999999999999 7999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCC
Q 004366 126 RHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSG 205 (759)
Q Consensus 126 rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW~~G 205 (759)
|||||||||||||||||||+|||+|||||||++|||||+|||||||++|+||+++|++.+|+|++||++++.+||||+||
T Consensus 85 RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vtvy~~Ddea~~~W~~~~gip~~rIir~~~~dNfW~~G 164 (879)
T COG0013 85 RHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYEDDDEAYNEWEKIIGIPPERIIRIGASDNFWEMG 164 (879)
T ss_pred cchhHHHhhhcCchhHHHHHHHHHHHHHHHHhhcCCCHHHEEEEEecCchHHHHHHHhhcCCCHHHeeecCcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEecCCCCCCCCCC--CCCCCceEEEeeeeccccccc-CCCccccCccCcccccchHHHHHHHHhCCCC
Q 004366 206 ATGPCGPCSEIYYDFHPDRGCSDVD--LGDDTRFIEFYNLVFMQYNKK-DDGSLEPLKQKNIDTGLGLERIARILQKVPN 282 (759)
Q Consensus 206 ~~GpcGPcsEI~~d~g~~~~~~~~~--~~~~~r~lEiwNlVFmq~~~~-~~g~~~~Lp~k~IDTGmGlERl~~vlqg~~s 282 (759)
+ ||||||||||||||+.+++..+. ..|++|||||||||||||||+ ++|+|.|||+||||||||||||+|||||+||
T Consensus 165 ~-GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~IDTGmGLERi~~vlQ~~~t 243 (879)
T COG0013 165 D-GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNIDTGMGLERIAAVLQGVPT 243 (879)
T ss_pred C-cCCCCceEEEEcCCcccCCCCCCCcCCCCCceEEEeeeeehhhccCCCCCCcccCCCCCcccCccHHHHHHHHcCCCc
Confidence 9 99999999999999999987774 488999999999999999999 6999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHhCCCccCCccccccceEEeehhhhhHHhhhhCCCccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 004366 283 NYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKG 362 (759)
Q Consensus 283 ~ydtd~F~~li~~i~~~~~~~y~~~~~~~~~~~rviaDH~R~~~~~i~DG~~Psn~grGYvlRrilRRa~r~~~~lg~~~ 362 (759)
|||||+|.|||+.+++++|+.|..+.+..++++||||||+||++|||+|||+|||+|||||||||||||+||+++||++.
T Consensus 244 nyd~dlf~~ii~~~e~~~g~~~~~~~~~~~~s~rVIADH~Rs~~f~iaDGv~PSNegrGYvlRriiRRa~R~~~~LG~~~ 323 (879)
T COG0013 244 NYDTDLFRPIIKAIEKLTGKKYGEDEEDPDVSFRVIADHIRSLAFMIADGVLPSNEGRGYVLRRIIRRALRHGKLLGIKE 323 (879)
T ss_pred chhhhhhHHHHHHHHHHhCCcCCccccccceeEEEehhHHHHHHHHHhCCCCcCCCCccHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999997655334889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCh
Q 004366 363 DGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSG 442 (759)
Q Consensus 363 ~~~~~~~~~~l~~lv~~v~~~m~~~yPeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~i~~~~~~~~~~g~~~~l~g 442 (759)
| ||++|||.+++.|+++||||.++++.|+++|+.||++|.+||++|+++|+++++ ++++ + ++|||
T Consensus 324 ~--------fl~~LV~~~~~~m~~~ypel~~~~~~I~~vl~~EEe~F~~TL~~G~~l~~~~~~----~~~~-~--~~l~g 388 (879)
T COG0013 324 P--------FLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKLEEERFAKTLERGLKLLEKELA----KLKK-S--KTLDG 388 (879)
T ss_pred h--------HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcc-C--CccCh
Confidence 9 999999999999999999999999999999999999999999999999999998 6655 3 58999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHcCCeeChhhHHHHHHHHHHHHHHhhcccccccCCh--hHHhhhCCCCcccccccccc
Q 004366 443 QDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDS--ADLAEKIPDTEFLGYDTLSA 520 (759)
Q Consensus 443 ~~af~LydTyGfP~dlt~~ia~e~g~~vd~~~F~~~~~~~r~~sr~~~~~~~~~~~~~--~~l~~~~~~T~f~gY~~~~~ 520 (759)
++||+||||||||+|||++||+|+|++||+++|+.+|++||++||+++ .+....... ..+.+..++|+|+||+++++
T Consensus 389 e~afkLYDTyGfP~eLt~eia~e~g~~VD~~~f~~~m~~qr~~ar~~~-~~~~~~~~~~~~~~~~~~~~tef~gY~~~~~ 467 (879)
T COG0013 389 EDAFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERARASA-GSGEGAKESEDLELIDKLPETEFLGYDDLEM 467 (879)
T ss_pred HHheeehhcCCCCHHHHHHHHHHcCCeeccccHHHHHHHHHHHhhhcc-ccccccchhhhhhhhccCCCceeeecccccc
Confidence 999999999999999999999999999999999999999999999765 222111111 12223367899999999999
Q ss_pred ceEEEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEeCC-CcccccceEEEEEEEEeCCCEEEEEEEee
Q 004366 521 KAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQ-GTNQQTAVVEVKDVKKSLGSVFVHKGTIR 599 (759)
Q Consensus 521 ~akVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~-~~~~~~~~~~V~dV~k~~~g~ivH~~~~~ 599 (759)
+++|++++.+++.|+++.+|++++||||+||||||||||++|+|+|..++ . .+.|.||||.++|+++|.+...
T Consensus 468 ~~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~~~~~------~~~V~dvqK~~~~~~vH~~~~~ 541 (879)
T COG0013 468 EFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFGDGGG------RFEVTDVQKVGNGVIVHKGKVE 541 (879)
T ss_pred eEEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCceEEEEecCCc------EEEEEEEEEcCCceEEEEEeec
Confidence 99999999888769999999999999999999999999999999999874 5 8999999999669999999998
Q ss_pred ccccCCCCEEEEEEccccchHHHHhccHHHHHHHHHHhHhCCcceeeeeeccCCcEEEEEecCCCCCHHHHHHHHHHHHH
Q 004366 600 EGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLING 679 (759)
Q Consensus 600 ~g~l~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~lt~eel~~IE~~vNe 679 (759)
.|.|++|+.|.++|||+||+++|+|||||||||+|||++||.|++|+||+++++++||||+|++++|+|||++||+.||+
T Consensus 542 ~G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~Eel~~IE~~vNe 621 (879)
T COG0013 542 SGELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEELKEIERLVNE 621 (879)
T ss_pred cCccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEEcCHHHHHHhchhhhcCCCCCCcEEEEEECCccccccccCCccc----ccCcEEEEeeecCCCCce
Q 004366 680 WIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVKISSKMYVLWRFLVCLWNFV----VEPMLTILLKSEPSKSFL 752 (759)
Q Consensus 680 iI~~~~pV~~~~~~~eEA~~~~~~~lf~eky~~~VRVV~Ig~~~~d~~~CgGTHV----eIG~IkIl~~~~~gk~~~ 752 (759)
+|++|+||.+.+|++++|++.|++++|||+|++.||||+||+ ++.++|||||| +||.|||++.+..++|-+
T Consensus 622 ~I~~n~~V~~~~m~~~eAk~~Ga~alfGekY~~~VRVV~ig~--~SvElCGGTHv~~Tg~IG~fkI~~e~~i~aGVr 696 (879)
T COG0013 622 IIRENLPVKTEEMDLDEAKAKGAMALFGEKYGDEVRVVEIGD--FSVELCGGTHVSNTGDIGLFKIISEEGIAAGVR 696 (879)
T ss_pred HHHcCCceeEEEccHHHHHHhChHhhcCCcCCCeEEEEEECC--ceeeccCCcccCCccceeeEEEEEecccccCeE
Confidence 999999999999999999999999999999999999999999 89999999999 899999999999999865
|
|
| >PLN02900 alanyl-tRNA synthetase | Back alignment and domain information |
|---|
| >TIGR00344 alaS alanine--tRNA ligase | Back alignment and domain information |
|---|
| >PRK00252 alaS alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK13902 alaS alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK01584 alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02961 alanine-tRNA ligase | Back alignment and domain information |
|---|
| >KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer | Back alignment and domain information |
|---|
| >smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
| >PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
| >TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit | Back alignment and domain information |
|---|
| >PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain | Back alignment and domain information |
|---|
| >PRK14908 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
| >PRK09350 poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
| >PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00462 genX lysyl-tRNA synthetase-like protein GenX | Back alignment and domain information |
|---|
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 759 | ||||
| 3hxu_A | 441 | Crystal Structure Of Catalytic Fragment Of E. Coli | 1e-115 | ||
| 3hxz_A | 441 | Crystal Structure Of Catalytic Fragment Of E. Coli | 1e-114 | ||
| 1yfr_A | 465 | Crystal Structure Of Alanyl-Trna Synthetase In Comp | 1e-112 | ||
| 3htz_A | 464 | Crystal Structure Of The Catalytic Fragment Of Alan | 1e-112 | ||
| 1riq_A | 465 | The Crystal Structure Of The Catalytic Fragment Of | 1e-104 | ||
| 2zzf_A | 752 | Crystal Structure Of Alanyl-Trna Synthetase Without | 4e-45 | ||
| 2zze_A | 752 | Crystal Structure Of Alanyl-Trna Synthetase Without | 5e-36 | ||
| 2ztg_A | 739 | Crystal Structure Of Archaeoglobus Fulgidus Alanyl- | 1e-34 |
| >pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Alasa Length = 441 | Back alignment and structure |
|
| >pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa Length = 441 | Back alignment and structure |
| >pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium Length = 465 | Back alignment and structure |
| >pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine: Re-Refined Length = 464 | Back alignment and structure |
| >pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The Alanyl-Trna Synthetase Length = 465 | Back alignment and structure |
| >pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain Length = 752 | Back alignment and structure |
| >pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain In Lysine-Methylated Form Length = 752 | Back alignment and structure |
| >pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking The C-Terminal Dimerization Domain In Complex With Ala-Sa Length = 739 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 | Back alignment and structure |
|---|
Score = 708 bits (1830), Expect = 0.0
Identities = 209/480 (43%), Positives = 298/480 (62%), Gaps = 27/480 (5%)
Query: 49 SGDSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPRQVPRAA 107
S IR+ FL F+ +GH + SA LVPE DPT+L AGM+ FK +FLG R RA
Sbjct: 4 SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 63
Query: 108 TSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPA 163
+ Q+C+R ND+E VG TSRHHTFFEMLGNFSFGDYFKKEAI++AWEF T LP
Sbjct: 64 SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 123
Query: 164 NRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPD 223
+L++SVY+DD+EA+ IWN+ +G+P E I R+G +DNFW G GPCGP SEIY D +
Sbjct: 124 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE 183
Query: 224 RGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNN 283
+ R++E +NLVFMQYN+ ++G L PL NIDTG+GLERIA +LQ +N
Sbjct: 184 YEGDE-------RYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSN 236
Query: 284 YETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYV 343
+E D+IFP+I+ E++ Y + T++ L++I DHLRAI + +SDGV PSN GRGYV
Sbjct: 237 FEIDIIFPLIQFGEEVSGKKYGE-KFETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295
Query: 344 VRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELK 403
+RR++RRA+R G LGI+ FL + +++ +++ + + +K
Sbjct: 296 IRRILRRAMRFGYKLGIE--------NPFLYKGVDLVVDIMKEPYPELELSREFVKGIVK 347
Query: 404 REELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVA 463
EE RF++TL+ G + + +++ AL R+ LSG++ F YDT+GFPV++ E+A
Sbjct: 348 GEEKRFIKTLKAGMEYIQEVIQKALEEGRK-----TLSGKEVFTAYDTYGFPVDLIDEIA 402
Query: 464 EEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVD-DSADLAEKIPDTEFLGYDTLSAKA 522
E G+ +D++GF E+E QR +++ V + L E + F+G L
Sbjct: 403 REKGLGIDLEGFQCELEEQRERARKHFKVEAKKVKPVYSHLKELGKTSAFVGAAALEHHH 462
|
| >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 | Back alignment and structure |
|---|
| >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 | Back alignment and structure |
|---|
| >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 | Back alignment and structure |
|---|
| >2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216 | Back alignment and structure |
|---|
| >3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Length = 241 | Back alignment and structure |
|---|
| >1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Length = 157 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 759 | |||
| 2zze_A | 752 | Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML | 100.0 | |
| 2ztg_A | 739 | Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy | 100.0 | |
| 1yfs_A | 465 | Alanyl-tRNA synthetase; alpha-beta fold, helix-loo | 100.0 | |
| 3hy0_A | 441 | Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 3kew_A | 241 | DHHA1 domain protein; structural genomics, PSI-2, | 100.0 | |
| 2e1b_A | 216 | PH0108, 216AA long hypothetical alanyl-tRNA synthe | 100.0 | |
| 1v4p_A | 157 | Alanyl-tRNA synthetase; alanine-tRNA ligase, riken | 99.89 | |
| 1tke_A | 224 | Threonyl-tRNA synthetase; ligase; 1.46A {Escherich | 99.88 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 99.78 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 99.77 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 92.83 | |
| 3rf1_A | 311 | Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA | 92.72 | |
| 1j5w_A | 298 | Glycyl-tRNA synthetase alpha chain; structural gen | 92.36 |
| >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-201 Score=1739.56 Aligned_cols=649 Identities=27% Similarity=0.434 Sum_probs=595.3
Q ss_pred CCcccccceeeeccCCCccccCcCCCc----CCCchhhcccCCCCCCChHHHHHHHHHHHhhCC---CeeecCccCcC-C
Q 004366 6 PSILPCGHFLFKGATGVPSARSTSASV----QPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRG---HKVLPSASLVP-E 77 (759)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~g---H~~v~s~slvp-~ 77 (759)
+.|-.||.+||+.+..|+.|.+..-+. +.|+ ..++||++|||++||+||++|| |++|||||||| +
T Consensus 18 ~~c~~c~~~fwt~~~~r~~cgd~~c~~y~fi~~~~-------~~~~~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~ 90 (752)
T 2zze_A 18 XXCXVCGXPFWTLDPDRETCGDPPCDEYQFIGKPG-------IPRXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRW 90 (752)
T ss_dssp EECTTTCCEEEESCTTCCSCSSTTTSCCCCTTSCS-------SSSCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTT
T ss_pred eeecccCcceeecCCCcCCCCCCCCCCccccCCCc-------ccccCCHHHHHHHHHHHHhccCCCcceEEeccCcccCC
Confidence 469999999999999999999876543 3332 2247999999999999999999 99999999999 8
Q ss_pred CCccceecccccccccccc-ccCCCCCCCcccccCcccCCCccccCCCCCcccccccccCCccC-----cccHHHHHHHH
Q 004366 78 DPTVLLTIAGMLQFKPIFL-GKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFG-----DYFKKEAIQWA 151 (759)
Q Consensus 78 d~tllf~nAGm~~fk~~f~-g~~~p~~~r~~~~QkCiR~nDldnVG~t~rH~TfFEMlGn~Sfg-----dYfK~eai~~a 151 (759)
|||||||||||+||||||+ |.++||++|+||||||||+|||||||+|+||||||||||||||| ||||+|||+||
T Consensus 91 dptllftnAGm~~fk~~f~~G~~~pp~~r~~~~QkCiR~~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~a 170 (752)
T 2zze_A 91 RDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIRFTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELA 170 (752)
T ss_dssp CSSCSSCCSGGGGGTTHHHHTSSCCSSSSEEEEEEEECCTTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHH
T ss_pred CCCeeeeecchhhhhHhhcCCCcCCCCCCccccccceecCcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHH
Confidence 9999999999999999997 99999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCCCCCCCCCceEEEEecCCCCCCCCCCC
Q 004366 152 WEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDL 231 (759)
Q Consensus 152 wefLt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNfW~~G~~GpcGPcsEI~~d~g~~~~~~~~~~ 231 (759)
|||||++||||++||+. +||||+|| ||||||||||||
T Consensus 171 we~lT~~~gl~~~ri~~-----------------------------~dNfW~~G--GpcGPcsEI~~d------------ 207 (752)
T 2zze_A 171 FEFFTKELXMXPEDITF-----------------------------KENPWAGG--GNAGPAFEVLYR------------ 207 (752)
T ss_dssp HHHHHHTSCCCGGGEEE-----------------------------EECCEEET--TEEECEEEEEET------------
T ss_pred HHHHhhhhhcchhheee-----------------------------ccCcccCC--CCCCCceeEEEC------------
Confidence 99999999999998741 69999999 999999999996
Q ss_pred CCCCceEEEeeeecccc-------------cccCCCccccCccCcccccchHHHHHHHHhCCCCcccccccHHHHHHHHH
Q 004366 232 GDDTRFIEFYNLVFMQY-------------NKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASE 298 (759)
Q Consensus 232 ~~~~r~lEiwNlVFmq~-------------~~~~~g~~~~Lp~k~IDTGmGlERl~~vlqg~~s~ydtd~F~~li~~i~~ 298 (759)
+||||||||||| || ++|+|.|||+||||||||||||||||||++||||| +|.|||++|++
T Consensus 208 -----glEiwNlVFmq~~~~~~~~~~~~~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~ 280 (752)
T 2zze_A 208 -----GLEVATLVFMQYXXAPENAPQDQVVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXX 280 (752)
T ss_dssp -----TEEEEEEEEEEEEECCTTCCSCCEEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHH
T ss_pred -----CEeeeeeeeeeeccccccccccchhcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHH
Confidence 299999999999 88 69999999999999999999999999999999999 99999999999
Q ss_pred HhCCCccC--------------Cccc-c--------------------------ccceEEeehhhhhHHhhhhCCCccCC
Q 004366 299 LANVSYAQ--------------SNDR-T--------------------------NLNLKIIGDHLRAIVYLLSDGVFPSN 337 (759)
Q Consensus 299 ~~~~~y~~--------------~~~~-~--------------------------~~~~rviaDH~R~~~~~i~DG~~Psn 337 (759)
++|++|+. +.+. . ++++||||||+||++|||+||++|||
T Consensus 281 ~~g~~y~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN 360 (752)
T 2zze_A 281 MAGIEKIDEKILMENSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSN 360 (752)
T ss_dssp HHTCCCCCHHHHHHHHHHHHTCCSSSSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred hcCCCccchhhhhhhhhccccCCccchhhHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCc
Confidence 99999854 2111 1 46999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004366 338 IGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGE 417 (759)
Q Consensus 338 ~grGYvlRrilRRa~r~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~m~~~yPeL~~~~~~I~~ii~~EE~~F~~tL~~G~ 417 (759)
+|||||||||||||+|++++||++.| |++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+
T Consensus 361 ~GrGYvlRrilRRa~r~~~~lg~~~~---------l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~ 431 (752)
T 2zze_A 361 VXAGYLARLLIRKSIRHLRELGLEVP---------LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGS 431 (752)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTCCCC---------HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhCCCcc---------hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCChHHHHHHhhcCCCChhhHHHHHHHcCCeeChh-hHHHHHHHHHHHHHHhhcccccc
Q 004366 418 KLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMK-GFDIEMENQRRQSQAAHNAVKLS 496 (759)
Q Consensus 418 ~~l~~~i~~~~~~~~~~g~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vd~~-~F~~~~~~~r~~sr~~~~~~~~~ 496 (759)
++|+++++ +++++|. +.|||++||+||||||||+|||++||+|+|++||++ +|+++|++||+++|++... .
T Consensus 432 ~~l~~~~~----~~~~~~~-~~l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~~---~ 503 (752)
T 2zze_A 432 DLVRREIA----KLKKKGI-KEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKGE---E 503 (752)
T ss_dssp HHHHHHHH----HHHHHSC-SCCCHHHHHHHHHHHCCCHHHHHHHHTTSSCCCCCCTTHHHHHHGGGGCC----------
T ss_pred HHHHHHHH----HhhhcCC-CccCHHHHHHHHhccCCCHHHHHHHHHHcCCccCCcccHHHHHHHHHHHHhhcccc---c
Confidence 99999998 6554453 579999999999999999999999999999999998 8999999999998865311 1
Q ss_pred cCChhHHhhhCCCCccccccc---cccceEEEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEeCCCcc
Q 004366 497 VDDSADLAEKIPDTEFLGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTN 573 (759)
Q Consensus 497 ~~~~~~l~~~~~~T~f~gY~~---~~~~akVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~ 573 (759)
..+...+. ..++|+|+||++ .+++|+|+++.. .+||||+|||||||||||+|+|+|..++.
T Consensus 504 ~~~~~~~~-~~~~T~~l~Y~~~yl~~~~a~Vl~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~-- 567 (752)
T 2zze_A 504 LVDFELLK-DLPDTRRLYYEDPFMXEFDAXVLRVIX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGR-- 567 (752)
T ss_dssp CCCSSSSS-SSCCCEEHHHHCTTCCEEEEEEEEEET-------------TEEEESEECSCCSBTTBCCCCEEEEETTE--
T ss_pred chhhHHhc-cCCCceeecccCCccceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCE--
Confidence 10001122 357899999999 688999999974 26999999999999999999999987665
Q ss_pred cccceEEEEEEEEeCCCEEEEEEEeeccccCCCCEEEEEEccccchHHHHhccHHHHHHHHHHhHhCCcceeeeeeccCC
Q 004366 574 QQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFD 653 (759)
Q Consensus 574 ~~~~~~~V~dV~k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~mr~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d 653 (759)
.+.|.+|++. +|.++|.+.. .+.|++|++|.++|||+||+.+|++|||+|||++||+++||.+++|+|+++.++
T Consensus 568 ----~~~V~dv~k~-~g~ivH~~~~-~~~l~vGd~V~~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d 641 (752)
T 2zze_A 568 ----EVXVTNVQXV-GXVIIHXVED-PGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTD 641 (752)
T ss_dssp ----EEEEEEEEEE-TTEEEEEESC-GGGCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSS
T ss_pred ----EEEEEeeeec-CcEEEEeccc-cCccCcCCeEEEEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCC
Confidence 7999999998 8999999985 477999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHHhchhhhc--CCCCCCcEEEEEECCccccccccCC
Q 004366 654 RLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVKISSKMYVLWRFLVCLW 731 (759)
Q Consensus 654 ~~R~DF~~~~~lt~eel~~IE~~vNeiI~~~~pV~~~~~~~eEA~~~~~~~lf--~eky~~~VRVV~Ig~~~~d~~~CgG 731 (759)
++||||++++++|++++++||+.||++|++|+||++.+++++||++.+++++| +++|++.||||+||+ +|.++|||
T Consensus 642 ~~rfDFs~~~~lt~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~~~lf~~ge~ygd~VRVV~IGd--~svelCGG 719 (752)
T 2zze_A 642 WARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPGREIRVVXIED--WDVQACGG 719 (752)
T ss_dssp CEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEEEEHHHHHHHHCGGGCSSCCCCSSEEEEEEETT--TEEEECCS
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCccceeecCHHHHhhcchhhhhcCCCCCCCeEEEEEECC--ceeCCCCC
Confidence 99999999999999999999999999999999999999999999999888888 899999999999998 89999999
Q ss_pred ccc----ccCcEEEEeeecCCCCce
Q 004366 732 NFV----VEPMLTILLKSEPSKSFL 752 (759)
Q Consensus 732 THV----eIG~IkIl~~~~~gk~~~ 752 (759)
||| +||.|||++.+.+++|.+
T Consensus 720 THV~nTgeIG~fKIls~s~i~~Gvr 744 (752)
T 2zze_A 720 THLPSTGLVGPIXILRTERIQDGVE 744 (752)
T ss_dssp CCCSBGGGGCCEEEEEEEEEETTEE
T ss_pred CccCCHhHccEEEEEEEEEEcCCEE
Confidence 999 899999999998899864
|
| >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A | Back alignment and structure |
|---|
| >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* | Back alignment and structure |
|---|
| >3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} | Back alignment and structure |
|---|
| >2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 | Back alignment and structure |
|---|
| >1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A | Back alignment and structure |
|---|
| >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
| >3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A* | Back alignment and structure |
|---|
| >1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 759 | ||||
| d1riqa2 | 236 | d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) | 7e-96 | |
| d1riqa1 | 221 | a.203.1.1 (A:237-457) Putative anticodon-binding d | 1e-48 | |
| d2e1ba1 | 87 | b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-t | 8e-13 | |
| d1v4pa_ | 151 | d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeo | 1e-11 | |
| d2e1ba2 | 129 | d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C | 1e-10 | |
| d1nyra3 | 179 | d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrR | 7e-09 | |
| d1tkea2 | 162 | d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrR | 3e-05 |
| >d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Alanyl-tRNA synthetase (AlaRS) species: Aquifex aeolicus [TaxId: 63363]
Score = 295 bits (756), Expect = 7e-96
Identities = 129/241 (53%), Positives = 165/241 (68%), Gaps = 12/241 (4%)
Query: 49 SGDSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPRQVPRAA 107
S IR+ FL F+ +GH + SA LVPE DPT+L AGM+ FK +FLG R RA
Sbjct: 3 SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 62
Query: 108 TSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPA 163
+ Q+C+R ND+E VG TSRHHTFFEMLGNFSFGDYFKKEAI++AWEF T LP
Sbjct: 63 SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 122
Query: 164 NRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPD 223
+L++SVY+DD+EA+ IWN+ +G+P E I R+G +DNFW G GPCGP SEIY D +
Sbjct: 123 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE 182
Query: 224 RGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNN 283
+ R++E +NLVFMQYN+ ++G L PL NIDTG+GLERIA +LQ +N
Sbjct: 183 YEGDE-------RYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSN 235
Query: 284 Y 284
+
Sbjct: 236 F 236
|
| >d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 221 | Back information, alignment and structure |
|---|
| >d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 87 | Back information, alignment and structure |
|---|
| >d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 151 | Back information, alignment and structure |
|---|
| >d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 129 | Back information, alignment and structure |
|---|
| >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 179 | Back information, alignment and structure |
|---|
| >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 759 | |||
| d1riqa2 | 236 | Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [ | 100.0 | |
| d1riqa1 | 221 | Putative anticodon-binding domain of alanyl-tRNA s | 100.0 | |
| d2e1ba2 | 129 | AlaX-M trans-editing enzyme, C-terminal domain {Py | 99.95 | |
| d1v4pa_ | 151 | Hypothetical protein PH0574 {Archaeon Pyrococcus h | 99.94 | |
| d1nyra3 | 179 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 99.88 | |
| d2e1ba1 | 87 | AlaX-M trans-editing enzyme, N-terminal domain {Py | 99.72 | |
| d1tkea2 | 162 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 99.63 | |
| d1j5wa_ | 281 | Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermo | 96.0 | |
| d1jjca_ | 266 | Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS | 80.02 |
| >d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Alanyl-tRNA synthetase (AlaRS) species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=1.3e-108 Score=835.56 Aligned_cols=231 Identities=56% Similarity=1.032 Sum_probs=225.6
Q ss_pred CCChHHHHHHHHHHHhhCCCeeecCccCcC-CCCccceeccccccccccccccCCCCCCCcccccCcccC----CCcccc
Q 004366 47 PSSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRT----NDVENV 121 (759)
Q Consensus 47 ~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp-~d~tllf~nAGm~~fk~~f~g~~~p~~~r~~~~QkCiR~----nDldnV 121 (759)
.||++|||++||+||++|||+++||||||| +|||||||||||+||||||+|.++||++|++++|||||+ ||||||
T Consensus 1 ~mt~~eiR~~Fl~FF~~~gH~~v~s~slvp~~DptlLFtnAGM~~Fkp~flG~~~p~~~r~~~~QkCiR~~gk~nDld~V 80 (236)
T d1riqa2 1 SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQV 80 (236)
T ss_dssp CCCHHHHHHHHHHHHHHTTCEECCCCCSSCTTCTTCSSCCSTTGGGHHHHTTSSCCSCSEEEEEEEEECEETTEECTTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCEEcCCCCcccCCCCCeeeecccchhhhhhhcCccccCCCccccccccccccCccchhhhc
Confidence 389999999999999999999999999999 799999999999999999999999999999999999999 899999
Q ss_pred CCCCCcccccccccCCccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCc
Q 004366 122 GRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNF 201 (759)
Q Consensus 122 G~t~rH~TfFEMlGn~SfgdYfK~eai~~awefLt~~l~l~~~rl~vTv~~~D~e~~~iW~~~~g~~~~~I~~~~~~dNf 201 (759)
|+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||++|+||+++|.+.+|||++||++++.+|||
T Consensus 81 G~t~rH~TfFEMLGn~SFgdYfK~eai~~awe~lt~~l~l~~~rl~vtv~~~D~e~~~~w~~~~gi~~~rI~~~~~~dNf 160 (236)
T d1riqa2 81 GYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNF 160 (236)
T ss_dssp TTSSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETTCHHHHHHHHTTTCCCGGGEEEECHHHHE
T ss_pred CCcccchhhhhhccccccCchhHHHHHHHHHHHHHHHhccCccceEEEeecCcHHHHHHHHhhcCcccccceecCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCceEEEEecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCC
Q 004366 202 WNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVP 281 (759)
Q Consensus 202 W~~G~~GpcGPcsEI~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGlERl~~vlqg~~ 281 (759)
|+||++||||||||||||+|+.+ .+++|||||||+|||||+|+++|++.|||+|+||||||||||||||||++
T Consensus 161 W~~g~~GpcGPcsEi~yd~g~~~-------~~~~r~lEIwNlVFmqy~~~~~G~~~~L~~k~IDTGmGLERi~~vlqg~~ 233 (236)
T d1riqa2 161 WQMGDVGPCGPSSEIYVDRGEEY-------EGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKN 233 (236)
T ss_dssp EESSSSEEEEEEEEEEEECCTTS-------CHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCS
T ss_pred cccCCCCCCCcceeEEEcccccc-------CCCCceeeeeeeeheeeeecCCCccccCCCCcccCCccHHHHHHHHcCCC
Confidence 99999999999999999998764 34689999999999999999999999999999999999999999999999
Q ss_pred Ccc
Q 004366 282 NNY 284 (759)
Q Consensus 282 s~y 284 (759)
|||
T Consensus 234 s~y 236 (236)
T d1riqa2 234 SNF 236 (236)
T ss_dssp SGG
T ss_pred CCC
Confidence 998
|
| >d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|